BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus
Liberibacter asiaticus str. psy62]
         (471 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|291618007|ref|YP_003520749.1| SbcB [Pantoea ananatis LMG 20103]
 gi|291153037|gb|ADD77621.1| SbcB [Pantoea ananatis LMG 20103]
          Length = 473

 Score =  418 bits (1074), Expect = e-115,   Method: Composition-based stats.
 Identities = 246/467 (52%), Positives = 325/467 (69%), Gaps = 1/467 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+ +DYETFG   + DRPAQFAG+R D  +  +   EVF+C+P DDYLP PEAV ITGI
Sbjct: 7   TFLFHDYETFGTSPSRDRPAQFAGLRTDSNFNPVGEPEVFYCRPPDDYLPQPEAVMITGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A   GV EAEF+ RIH  F+   TC++GYNN+RFDD  +RNIFYRNFYD Y WSW 
Sbjct: 67  TPQIAASRGVSEAEFAARIHALFTAEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWSWQ 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLDVMRA YA  P+GI WP  +DG  SF+L+ L  ANG+ H NAHDA +DVYA
Sbjct: 127 NGNSRWDLLDVMRACYALRPEGINWPENEDGFPSFRLEHLTKANGVAHENAHDAMSDVYA 186

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           TLA+  L++EK+PKLFE+L+ +RNKN+L  LIDI  M PLVHVSGMFGA+R NT+ + P+
Sbjct: 187 TLAMAKLVKEKQPKLFEFLFTHRNKNKLMTLIDIPQMKPLVHVSGMFGAARGNTSWVVPL 246

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           AWHP  ++++I  +L+GDM     LD+  L +RL+T   EL     +P+K VH+NKCP+L
Sbjct: 247 AWHPDNRNALIVVDLAGDMTPLLTLDADSLRERLYTRKSELGDQSAIPVKLVHINKCPVL 306

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362
            P +  + E   R GID K CL+NL  LRQ   +R++  AI+      + S DVD+QLYD
Sbjct: 307 APANTLRPEDAGRLGIDRKSCLDNLATLRQHPEIREKLVAIFADAEPFTPSDDVDTQLYD 366

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
           GFF+D DR  M+ I +TAP  L  L+L F   R+ +L FRYRARNFP TL + E+Q WL+
Sbjct: 367 GFFSDADRAGMNIIRQTAPANLPALDLTFDSPRVAKLLFRYRARNFPGTLDDAEQQRWLQ 426

Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           HR+++L   +++ +  +L+SL+  ++ D+ K   + ALY Y Q ++ 
Sbjct: 427 HRREVLNPDKVQSFLMELESLASLHESDQEKLAQLKALYLYAQELVS 473


>gi|294635527|ref|ZP_06714007.1| exodeoxyribonuclease I [Edwardsiella tarda ATCC 23685]
 gi|291091096|gb|EFE23657.1| exodeoxyribonuclease I [Edwardsiella tarda ATCC 23685]
          Length = 473

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 259/472 (54%), Positives = 332/472 (70%), Gaps = 4/472 (0%)

Query: 1   MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M+     F+ +DYETFG+  ALDRPAQFAGVR D  +  IE  +VF+C+PADDYLP PEA
Sbjct: 1   MSKAAPSFLFHDYETFGQHPALDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQPEA 60

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V ITGITPQ AL  G+ EAEF+ RIHQ FSVP TC++GYNNIRFDD  SRN+FYRNF+D 
Sbjct: 61  VMITGITPQTALAQGICEAEFAERIHQLFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDP 120

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           Y +SW NGNSRWDLLDV+R  YA  P GI WP  + G  SFKL+ L+ ANGIEH NAHDA
Sbjct: 121 YAYSWQNGNSRWDLLDVLRTCYALRPQGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDA 180

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
            ADVYAT+ +    ++ +P+LF+YL+  RNKN++ +LIDI  MTPLVHVSGMFGA R NT
Sbjct: 181 MADVYATIEMAKRAKQAQPRLFDYLFQLRNKNRVAQLIDIAEMTPLVHVSGMFGALRGNT 240

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297
           +L+AP+AWHP  K++VI C+L+GD+     LDS  L +RL+T   EL    PVPIK VH+
Sbjct: 241 SLVAPLAWHPDNKNAVIVCDLAGDITPLLTLDSETLRERLYTPRSELGDAAPVPIKLVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDV 356
           NKCP+L P      E+ ER G+D +RCL+NL  LR    +RD+  +++   P    + DV
Sbjct: 301 NKCPVLAPEKTLLAENAERLGLDRQRCLDNLAQLRHHHAVRDKVVSLFADAPPFPRASDV 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           DSQLYDGFF+D DRQ M  I  T P+ L  L+L F+D R+  L FRYRARN+P TL E E
Sbjct: 361 DSQLYDGFFSDADRQAMQIIRATQPQNLPALDLRFNDERITPLLFRYRARNYPATLDEAE 420

Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           +Q W +HR++MLT  R++EY   L+ L   Y+    +  L+ AL++Y + ++
Sbjct: 421 RQRWQQHRREMLTAERVQEYLQTLEMLYNRYEDQPQRLTLLRALFDYARELV 472


>gi|269138522|ref|YP_003295222.1| exonuclease I [Edwardsiella tarda EIB202]
 gi|267984182|gb|ACY84011.1| exonuclease I [Edwardsiella tarda EIB202]
          Length = 477

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 255/468 (54%), Positives = 328/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N F+ +DYETFG+  A DRPAQFAGVR D  +  IE  +VF+C+ ADDYLP P+AV IT
Sbjct: 9   QNTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQPDAVMIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  G  EAEF+ RIHQ FSVP TC++GYNNIRFDD  SRN+FYRNF+D Y +S
Sbjct: 69  GITPQTALAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDV+R  YA   +GI WP  + G  SFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 129 WQNGNSRWDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+AL   +++ +P+LF+YL+  RNKN++ +LIDI  MTPLVHVSGMFGA R NT+LIA
Sbjct: 189 YATIALAKRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLIA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  K++VI C+L  D+     LD+  L +RL+T   EL    PVPIK VH+NKCP
Sbjct: 249 PLAWHPENKNAVIVCDLDSDITPLLTLDATALRERLYTPRSELGDAAPVPIKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L P      ++  R G+D +RC +NL LL+Q + +RD+  +++   P    S DVDSQL
Sbjct: 309 VLAPEKTLLVDNAARLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDVDSQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DRQ M  I  T P+ L  L+L FSD R+  L FRYRARN+P TL E E++ W
Sbjct: 369 YDGFFSDADRQAMQIIRATQPQNLPALDLRFSDPRITPLLFRYRARNYPATLDENERRRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            +HR+ MLT  R+++Y   L+ L   Y+    K  L+ AL++Y + ++
Sbjct: 429 QQHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQKLTLLRALFDYARELV 476


>gi|157371451|ref|YP_001479440.1| exonuclease I [Serratia proteamaculans 568]
 gi|157323215|gb|ABV42312.1| Exodeoxyribonuclease I [Serratia proteamaculans 568]
          Length = 475

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 258/467 (55%), Positives = 340/467 (72%), Gaps = 2/467 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F I+DYETFG   ++DRPAQFAGVR D  +  IE   V +C PADDYLPDPEAV ITGI
Sbjct: 8   TFYIHDYETFGISPSMDRPAQFAGVRTDMDFNIIEEPLVIYCTPADDYLPDPEAVMITGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ AL  GV EAEF+R+IHQ FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +SW 
Sbjct: 68  TPQLALAKGVNEAEFTRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLDVMRA YA  PDGI WP  +DG  SF+L+ L  ANG+EH +AHDA +DVYA
Sbjct: 128 NGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDVYA 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  L+++ +P+LF++L  +RNK++L  LIDI  MTPLVHVSGMFGA+R NT+ ++P+
Sbjct: 188 TIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVSPL 247

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHP  K++VI C+L+GDM     L + +L +RL+T  ++L  G  PVPIK VH+NKCP+
Sbjct: 248 AWHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAPGQSPVPIKLVHINKCPV 307

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
           L P      E+ ER GID + CL+NL LLRQ   +R++  A++        S DVD++LY
Sbjct: 308 LAPAKTLLPENAERLGIDRQACLQNLQLLRQHPQVREKVVALFADAEPFKGSDDVDARLY 367

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGFF+D D+  M  I +T P+ L  L+L F+D RL EL FR+RARN+P+TL + E++ WL
Sbjct: 368 DGFFSDADKATMKIIQQTKPQNLPALDLTFNDGRLKELLFRFRARNYPNTLDDTEQRRWL 427

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           +HR++ L+  R++ Y  +L+SL   ++GD+ K  L+ AL+EY + ++
Sbjct: 428 QHRQEALSAERVQSYVLQLESLYNLHEGDQEKTALLKALFEYGKELV 474


>gi|238755403|ref|ZP_04616744.1| Exodeoxyribonuclease I [Yersinia ruckeri ATCC 29473]
 gi|238706340|gb|EEP98716.1| Exodeoxyribonuclease I [Yersinia ruckeri ATCC 29473]
          Length = 476

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 257/470 (54%), Positives = 338/470 (71%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  F ++DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   SPTFYVHDYETFGQHPALDRPAQFAGVRTDLDFNIIEEPLVVYCSPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  G+ EAEFS++IHQ FSV  TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQTALAKGINEAEFSQQIHQAFSVAGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA YA  P+GI WP  DDG  SFKL+ L  ANG+EH+ AHDA +DV
Sbjct: 127 WQNGNSRWDLLDVMRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           +AT+AL  L+++ +P+LF+YLY +R+K+++  LIDI  MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 HATIALAKLVKQAQPRLFDYLYQHRSKHKISALIDIAEMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GD+    +LD+  L +RL+T  D+L      VPIK VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDISPLLELDAETLRERLYTRRDKLSADQAAVPIKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ ER  ID +RCL+NL +LRQ   +R++   ++ + P  ++S DVD+Q
Sbjct: 307 PVLAPAKTLLAENAERLAIDRQRCLQNLQVLRQNPQIREKVVTLFAESPPFAASSDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF D DR  M  I +TAP+ L  L+L F D RL EL FR+RARN+P+TL + E++ 
Sbjct: 367 LYDGFFGDADRATMKIIQQTAPQNLPALDLSFQDPRLTELLFRFRARNYPNTLDDSEQRR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W  HR++ML+  R++EY  +L+     Y+ D+ K  L+  LY+Y + ++ 
Sbjct: 427 WQNHRREMLSPERVQEYVQQLEQFYNLYESDKEKLALLKDLYDYARELVS 476


>gi|304558543|gb|ADM41207.1| Exodeoxyribonuclease I [Edwardsiella tarda FL6-60]
          Length = 475

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 255/468 (54%), Positives = 328/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N F+ +DYETFG+  A DRPAQFAGVR D  +  IE  +VF+C+ ADDYLP P+AV IT
Sbjct: 7   QNTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQPDAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  G  EAEF+ RIHQ FSVP TC++GYNNIRFDD  SRN+FYRNF+D Y +S
Sbjct: 67  GITPQTALAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDV+R  YA   +GI WP  + G  SFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 127 WQNGNSRWDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+AL   +++ +P+LF+YL+  RNKN++ +LIDI  MTPLVHVSGMFGA R NT+LIA
Sbjct: 187 YATIALAKRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLIA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  K++VI C+L  D+     LD+  L +RL+T   EL    PVPIK VH+NKCP
Sbjct: 247 PLAWHPENKNAVIVCDLDSDITPLLTLDATALRERLYTPRSELGDAAPVPIKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L P      ++  R G+D +RC +NL LL+Q + +RD+  +++   P    S DVDSQL
Sbjct: 307 VLAPEKTLLVDNAARLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDVDSQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DRQ M  I  T P+ L  L+L FSD R+  L FRYRARN+P TL E E++ W
Sbjct: 367 YDGFFSDADRQAMQIIRATQPQNLPALDLRFSDPRITPLLFRYRARNYPATLDENERRRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            +HR+ MLT  R+++Y   L+ L   Y+    K  L+ AL++Y + ++
Sbjct: 427 QQHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQKLTLLRALFDYARELV 474


>gi|270262717|ref|ZP_06190988.1| exonuclease I [Serratia odorifera 4Rx13]
 gi|270043401|gb|EFA16494.1| exonuclease I [Serratia odorifera 4Rx13]
          Length = 475

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 253/467 (54%), Positives = 340/467 (72%), Gaps = 2/467 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F I+DYETFG+  ++DRPAQFAGVR D  +  IE   V +CKPADDYLPDPEAV ITGI
Sbjct: 8   TFYIHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCKPADDYLPDPEAVMITGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ AL  G+ EA+F+R IHQ FSVP TCI+GYNNIRFDD  SRNIFYR+FYD Y +SW 
Sbjct: 68  TPQLALAKGINEADFAREIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRSFYDPYAYSWQ 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLDVMRA YA  P+GI WP  +DG  SF+L+ L  ANG+EH +AHDA +DVYA
Sbjct: 128 NGNSRWDLLDVMRACYALRPEGIVWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDVYA 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  L+++ +P+LF++L  +RNK++L  LIDI  MTPLVHVSGMFGA+R NT+ ++P+
Sbjct: 188 TIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVSPL 247

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHP  K++VI C+L+GDM     L + +L +RL+T  ++L     PVPIK VH+NKCP+
Sbjct: 248 AWHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAADQSPVPIKLVHINKCPV 307

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
           L P      E+ ER GID + CL+NL LLRQ   +R++  A++       +  DVD++LY
Sbjct: 308 LAPAKTLLPENAERLGIDRQACLQNLQLLRQNPQVREKVVALFADAEPFKAVDDVDARLY 367

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGFF+D D+  M  I +T P+ L  L+L FSD R+ EL FR+RARN+P+TL + E++ WL
Sbjct: 368 DGFFSDADKAAMRIIQQTKPQNLPALDLTFSDGRMKELLFRFRARNYPNTLDDAEQRRWL 427

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           +HR++ L+  R++ Y  +L+SL   ++GD+ K  L+ AL+EY + ++
Sbjct: 428 QHRQEALSAERVQSYVLQLESLYNLHEGDKEKTALLKALFEYGKELV 474


>gi|308187438|ref|YP_003931569.1| exodeoxyribonuclease I [Pantoea vagans C9-1]
 gi|308057948|gb|ADO10120.1| exodeoxyribonuclease I [Pantoea vagans C9-1]
          Length = 475

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 246/469 (52%), Positives = 331/469 (70%), Gaps = 1/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   + DRPAQFAG+R D ++  +   EVF+C+P DDYLP PEAV IT
Sbjct: 7   QPTFLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPEVFYCRPPDDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A+  GV+EAEF+ RIH+ F+   TC++GYNN+RFDD  +RNIFYRNFYD Y W+
Sbjct: 67  GITPQIAMSRGVIEAEFAERIHKLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWA 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA YA  PDGI WP  ++G  SF+L+ L  ANG+ H NAHDA +DV
Sbjct: 127 WQNGNSRWDLLDVMRACYALRPDGINWPENEEGFPSFRLEHLTKANGVAHENAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YATLA+  L++EK+PKLF++L+ +RNKN+L  LIDI  M PLVHVSGMFGA+R NT+ I 
Sbjct: 187 YATLAMAKLVKEKQPKLFDFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWIV 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  ++++I  +L+GDM     LD+  L +RL+T  ++L  L  VP+K VH+NKCP
Sbjct: 247 PLAWHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L P    + E   R GID + CL NL LLRQQ ++R++   ++ +    + S DVD+QL
Sbjct: 307 VLAPASTLRPEDAARLGIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSDDVDTQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M+ I +TAP  L  L+L F   R+ +L FRYRARNFP TL + E+Q W
Sbjct: 367 YDGFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L+HR+++L   R++ +  +L+ L+  ++ D  K G + ALY Y Q ++ 
Sbjct: 427 LQHRREVLNSDRVQAFMQELEGLANLHEADAEKVGQLKALYLYAQELVS 475


>gi|238919203|ref|YP_002932718.1| exonuclease I [Edwardsiella ictaluri 93-146]
 gi|238868772|gb|ACR68483.1| exodeoxyribonuclease I [Edwardsiella ictaluri 93-146]
          Length = 473

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 255/472 (54%), Positives = 332/472 (70%), Gaps = 4/472 (0%)

Query: 1   MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M+     F+ +DYETFG+  A DRPAQFAGVR D  +  IE  +VF+C+PADDYLP P+A
Sbjct: 1   MSKAAPTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQPDA 60

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V ITGITPQ AL  GV EAEF+ RIH+ FSVP TC++GYNNIRFDD  SRN+FYRNF+D 
Sbjct: 61  VMITGITPQTALAQGVCEAEFAGRIHRLFSVPGTCVLGYNNIRFDDEVSRNLFYRNFFDP 120

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           Y +SW NGNSRWDLLDV+R  YA  P+GI WP  + G  SFKL+ L+ ANGIEH NAHDA
Sbjct: 121 YAYSWQNGNSRWDLLDVVRTCYALRPEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDA 180

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
            ADVYAT+AL   +++ +P+LF+YL+  RNKN++ +LIDI  MTPLVHVSGMFGA R NT
Sbjct: 181 MADVYATIALAQRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNT 240

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297
           +LIAP+AWHP  K++VI C+L  D+     LD+  L +RL+T  +EL    PVPIK VH+
Sbjct: 241 SLIAPLAWHPENKNAVIVCDLDSDITPLLTLDADALRERLYTPRNELGDAAPVPIKLVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDV 356
           NKCP+L P      ++  R G+D +RC +NL LL+Q + +RD+  +++   P    S DV
Sbjct: 301 NKCPVLAPEKTLLADNAVRLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDV 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           DSQLYDGFF+D DRQ M  I  T P+ L  L+L F+DRR+  L FRYRARN+P TL E E
Sbjct: 361 DSQLYDGFFSDADRQAMQIIRATLPQNLPALDLRFNDRRITPLLFRYRARNYPATLDESE 420

Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            + W +HR+ MLT   +++Y   L+ L   Y+    +  L+ AL++Y + ++
Sbjct: 421 MRRWQQHRQSMLTPQHVQDYLQTLEMLYNRYEDQPQRLTLLQALFDYARELV 472


>gi|117619062|ref|YP_856430.1| exodeoxyribonuclease I [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560469|gb|ABK37417.1| exodeoxyribonuclease I [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 564

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 212/466 (45%), Positives = 309/466 (66%), Gaps = 2/466 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F  +DYETFG   A DRPAQFAG+R D  +  I    V +CKP  DYLP+PEA  ITG
Sbjct: 100 PTFYFHDYETFGISPAKDRPAQFAGIRTDGDFNLIGEPLVIYCKPPADYLPEPEACLITG 159

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQKA++DG+ EA+F R+IH+ F+ P TC++GYN+IRFDD  +R   YRNFYD Y ++W
Sbjct: 160 ITPQKAMKDGLCEADFIRQIHEQFATPGTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAW 219

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWD+LD++RA YA  P+GI+W   ++G  SFKL+ L +ANG+ H NAHDA +DV 
Sbjct: 220 QNGNSRWDILDMLRACYALRPEGIEWAFDEEGKPSFKLEKLTVANGVAHANAHDALSDVL 279

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  L+++ +PKLF YL+D RNKN+++ LID+  M PLVHVSGMF   +   + ++P
Sbjct: 280 ATIEMAKLVKKAQPKLFGYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCASWVSP 339

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +AWHP  +++VI  +L+ D     +L S ++ +RL+T  +EL  L  +P+K VH+NKCP+
Sbjct: 340 LAWHPSNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHINKCPV 399

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
           L P      E  ++ GID ++C ++L LLR    +R++   ++N+ +  ++  D D+QLY
Sbjct: 400 LAPAATLTAERADQLGIDREQCRKSLDLLRAHPEVREKLVEVFNQEFAGNNDGDPDTQLY 459

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
            GFF   D+  MD +  T  + L      F+D RLPE+ FRYRARN+PHTLSE E++ W 
Sbjct: 460 AGFFGHGDKSTMDLVRATPADLLGEREFAFTDSRLPEMLFRYRARNWPHTLSEAEQKRWR 519

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            H        R+ +Y  +L+ L+ + +G+E    ++ +LY YL+ +
Sbjct: 520 LHCSDYF-SRRLPDYVPRLEELAEQNQGNERNFAILKSLYHYLENL 564


>gi|260598502|ref|YP_003211073.1| exonuclease I [Cronobacter turicensis z3032]
 gi|260217679|emb|CBA32024.1| Exodeoxyribonuclease I [Cronobacter turicensis z3032]
          Length = 480

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 246/468 (52%), Positives = 330/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG+  +LDRPAQFA +R D  +  I   +VF+CKPADDYLP PEAV IT
Sbjct: 12  QPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLIT 71

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G  EA+F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 72  GITPQVARARGENEADFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 131

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N NSRWDLLDVMRA YA  P+GI WP   DG  SF+L+ L +ANGIEH NAHDA ADV
Sbjct: 132 WQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADV 191

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P++F+YLY YR+K +L  L+DI  M PLVHVSGMFGA R NT+ IA
Sbjct: 192 YATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLVDIVQMKPLVHVSGMFGAWRGNTSWIA 251

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +L++  L +RL+T    L    PVP+K VHLNKCP
Sbjct: 252 PIAWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALNDASPVPVKLVHLNKCP 311

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  ER GID +RCL+NL +LR    +R++  A++ + P    + +VD+QL
Sbjct: 312 VLAQANTLRPEDAERLGIDRQRCLDNLKVLRDSPQVREKLVALFAEAPPFPPTDNVDAQL 371

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P+ L  L++ F D+R+ +L F YRARNFP TLSE+E++ W
Sbjct: 372 YDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIGKLLFNYRARNFPGTLSEQEQERW 431

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           L HR+ + T   ++ Y  +L+ L  +Y+ D+ K  L+ ALY+Y Q ++
Sbjct: 432 LAHRRDVFTPEFLQTYAQELEMLYNQYESDKEKTALLKALYQYAQEIV 479


>gi|188533503|ref|YP_001907300.1| exonuclease I [Erwinia tasmaniensis Et1/99]
 gi|188028545|emb|CAO96407.1| Exodeoxyribonuclease I [Erwinia tasmaniensis Et1/99]
          Length = 475

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 249/469 (53%), Positives = 341/469 (72%), Gaps = 1/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   +LDRPAQFA +R D  +  I   EVF+C+PADDYLP PEAV +T
Sbjct: 7   QPTFLFHDYETFGTSPSLDRPAQFAALRTDMDFNPIGEPEVFYCRPADDYLPQPEAVMVT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ EAEF++RIHQ FS PNTC++GYNN+RFDD  SRN+FYRNFYD Y WS
Sbjct: 67  GITPQIARARGLNEAEFTQRIHQLFSAPNTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDVMRA YA  PDGI WP  DDG  SF+L+ L  ANG+ H NAHDA +DV
Sbjct: 127 WQHGNSRWDLLDVMRACYALRPDGIVWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+   ++EK+P+L+++LY +RNK ++  LIDI  M PLVH+SGMFGA+R NT+ IA
Sbjct: 187 YATIAMAKRVKEKQPRLYDFLYAHRNKQKIGALIDIPQMKPLVHISGMFGAARGNTSWIA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  ++++I C+L GDM    +LD+  L +RL+T  +EL G  PVP+K VH+NKCP
Sbjct: 247 PLAWHPDNRNALITCDLGGDMAPLLELDADALRERLYTRREELNGASPVPLKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           ++ P +  + E  ER GID +RCL+NLTLLRQ   +R++   ++ +      S+DVD+QL
Sbjct: 307 VVAPANTLRPEDAERIGIDRQRCLDNLTLLRQHPEVREKVVTLFAEAQPFIPSEDVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M+ + +TA E L  L+L F+D R+ +L FR+RARNFP TL + E+Q W
Sbjct: 367 YNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDAEQQSW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L+HR+++L   R++ Y  +L+ L  +Y+GD+ ++  + AL+ Y+Q ++ 
Sbjct: 427 LQHRREVLNPERVQGYVQELEMLFNQYEGDKTRQEQLKALFAYMQELVS 475


>gi|156933393|ref|YP_001437309.1| exonuclease I [Cronobacter sakazakii ATCC BAA-894]
 gi|156531647|gb|ABU76473.1| hypothetical protein ESA_01206 [Cronobacter sakazakii ATCC BAA-894]
          Length = 491

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 246/468 (52%), Positives = 324/468 (69%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG+  +LDRPAQFA +R D  +  I   +VF+CKPADDYLP PEAV IT
Sbjct: 23  QPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLIT 82

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G  EAEF+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 83  GITPQVARARGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 142

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N NSRWDLLDVMRA YA  P+GI WP   DG  SF+L+ L +ANGIEH NAHDA ADV
Sbjct: 143 WQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADV 202

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P++F+YLY YR+K +L  LID   M PLVHVSGMFGA R NT+ IA
Sbjct: 203 YATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWIA 262

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           PVAWHP  +++VI  +L+GD+    +L++  L +RL+T    L     VP+K VHLNKCP
Sbjct: 263 PVAWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGDASAVPVKLVHLNKCP 322

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  ER GID + CL NL +LR    +R++  A++   P    + +VD+QL
Sbjct: 323 VLAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTDNVDAQL 382

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P+ L  L++ F D+R+ +L F YRARNFP TLSE+E+  W
Sbjct: 383 YDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQEQARW 442

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           L HR+ + T   ++ Y  +L+ L  +Y+ D+ K  L+ ALY+Y Q ++
Sbjct: 443 LAHRRDVFTPEFLQAYAQELEMLYNQYESDKEKTALLKALYQYAQEIV 490


>gi|295098241|emb|CBK87331.1| Exodeoxyribonuclease I subunit C [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 478

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 244/467 (52%), Positives = 332/467 (71%), Gaps = 1/467 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV +TG
Sbjct: 12  PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVMVTG 71

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ+A   GV EAEF+RRIH  F+VPNTC++GYNNIRFDD  +RNIFYRNFYD Y WSW
Sbjct: 72  ITPQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSW 131

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N NSRWDLLD+MRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADVY
Sbjct: 132 QNRNSRWDLLDIMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVY 191

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+A+  L++  +P+LFEYL  +R+K +L  LID+  M PLVH+SGMFGA R NT+ +AP
Sbjct: 192 ATIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAP 251

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +AWHP  +++VI  +L+GD+    +LDS  L +RL+T  + L  L  VP+K VH+NKCP+
Sbjct: 252 LAWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKEALGDLPAVPVKLVHINKCPV 311

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
           L   +  + E  +R GI+ + CL+NL +LR    +R++  AI+ +      S++VD+QLY
Sbjct: 312 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVREKVVAIFAEAEPFVPSENVDAQLY 371

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           +GFF+D DR  M+ +L+T P  L  L++ F+D+R+ +L F YRARN+P TL E E++ WL
Sbjct: 372 NGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQERWL 431

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           +HR+ + T   +  Y  +L+ L G+Y+G+  K+ L+ AL++Y Q ++
Sbjct: 432 QHRRNVFTPEFLNSYAQELEMLYGQYEGNAEKQALLKALFQYAQEIV 478


>gi|284919774|emb|CAX65551.1| putative exonuclease I [Enterobacter hormaechei]
          Length = 502

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 242/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV +TG
Sbjct: 36  PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVMVTG 95

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ+A   GV EAEF+RRIH  F+VPNTC++GYNNIRFDD  +RNIFYRNFYD Y WSW
Sbjct: 96  ITPQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSW 155

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N NSRWDLLD+MR  YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADVY
Sbjct: 156 QNRNSRWDLLDIMRVCYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVY 215

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+A+  L++  +P+LFEYL  +R+K +L  LID+  M PLVH+SGMFGA R NT+ +AP
Sbjct: 216 ATIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAP 275

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +AWHP  +++VI  +L+GD+    +L+S  L +RL+T  + L  L  VP+K VH+NKCP+
Sbjct: 276 LAWHPDNRNAVIMVDLAGDISPLLELNSDTLRERLYTPKEALGDLPAVPVKLVHINKCPV 335

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
           L   +  + E  +R GI+ + CL+NL +LR    +R++  AI+ +      S++VD+QLY
Sbjct: 336 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVREKVVAIFAEAEPFVPSENVDAQLY 395

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           +GFF+D DR  M+ +L+T P  L  L++ F+D+R+ +L F YRARN+P TL E E++ WL
Sbjct: 396 NGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQERWL 455

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           +HR+ + T   +  Y  +L+ L G+Y+G+  K+ L+ AL++Y Q ++
Sbjct: 456 QHRRNVFTPEFLNSYAQELEMLYGQYEGNAEKQALLKALFQYAQEIV 502


>gi|304397387|ref|ZP_07379265.1| Exodeoxyribonuclease I [Pantoea sp. aB]
 gi|304355005|gb|EFM19374.1| Exodeoxyribonuclease I [Pantoea sp. aB]
          Length = 475

 Score =  413 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 246/469 (52%), Positives = 331/469 (70%), Gaps = 1/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   + DRPAQFAG+R D ++  +   +VF+C+P DDYLP PEAV IT
Sbjct: 7   QPTFLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPDVFYCRPPDDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A+  G++EAEF+ RIH  F+   TC++GYNN+RFDD  +RNIFYRNFYD Y W+
Sbjct: 67  GITPQIAMSRGMIEAEFAERIHTLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWA 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA YA  PDGI WP  ++G  SF+L+ L  ANG+ H NAHDA +DV
Sbjct: 127 WQNGNSRWDLLDVMRACYALRPDGIIWPENEEGFPSFRLEHLTKANGVAHENAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YATLA+  L++EK+PKLFE+L+ +RNKN+L  LIDI  M PLVHVSGMFGA+R NT+ I 
Sbjct: 187 YATLAMAKLVKEKQPKLFEFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWIV 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  ++++I  +L+GDM     LD+  L +RL+T  ++L  L PVP+K VH+NKCP
Sbjct: 247 PLAWHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPPVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L P    + E   R GID + CL NL LLRQQ ++R++   ++ +    + S DVD+QL
Sbjct: 307 VLAPASTLRPEDAARLGIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSDDVDTQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M+ I +TAP  L  L+L F   R+ +L FRYRARNFP TL + E+Q W
Sbjct: 367 YDGFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L+HR+++L   R++ +  +L+ L+  ++ D  K G + ALY Y Q ++ 
Sbjct: 427 LQHRREVLNAERVQAFMQELEGLANLHEADAEKVGQLKALYLYAQELVS 475


>gi|227111961|ref|ZP_03825617.1| exonuclease I [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 475

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 256/469 (54%), Positives = 331/469 (70%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  A DRPAQFAGVR D  +  I    V +C+PADDYLP+PEAV IT
Sbjct: 6   QPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPADDYLPEPEAVMIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  GV EAEF+R+IH  FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 66  GITPQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLD +RA YA  P+GI WP  DDG  SF+L+ L  ANGI H  AHDA +DV
Sbjct: 126 WQNGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGISHEQAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L ++ +PKLFEYL+  RNKN++  LIDI  M PLVHVSGMFGA+RSNT+ + 
Sbjct: 186 YATIAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
           P+AWHP  +++VI C+L+GDM    +LDS  L +RL+T  D L+     VP+K VH+NKC
Sbjct: 246 PLAWHPDNRNAVIMCDLAGDMTPLLELDSAALRERLYTRRDALEADQSAVPLKLVHINKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQ 359
           P+L P +  + E  ER GID +RCL+NL LLR   ++R++   ++ +    ++S DVD +
Sbjct: 306 PVLAPANTLRPEDAERLGIDRQRCLDNLALLRSNASVREKVVELFAEAPAFTASDDVDLR 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF   DR  M  I  TAP+ L  L+L F+D RL  L FRYRARNFP TL ++E+Q 
Sbjct: 366 LYDGFFGYADRMAMKIIQETAPQNLPALDLTFADNRLEPLLFRYRARNFPGTLDDREQQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           WL+HR+ + T  R+++Y ++L +L  +++ D+ K   + ALY Y Q ++
Sbjct: 426 WLQHRRAVFTPERLQDYLSELSNLYQQHEDDKEKMAQLKALYAYAQELV 474


>gi|322832303|ref|YP_004212330.1| Exodeoxyribonuclease I [Rahnella sp. Y9602]
 gi|321167504|gb|ADW73203.1| Exodeoxyribonuclease I [Rahnella sp. Y9602]
          Length = 475

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 253/469 (53%), Positives = 340/469 (72%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYETFG++ ALDRPAQFAGVR D  +  IE   V +C+P+DDYLP+PEAV IT
Sbjct: 6   QKTFYFHDYETFGKNPALDRPAQFAGVRTDEDFNIIEEPLVIYCRPSDDYLPEPEAVMIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  G++EAEF+ +IH+ FSVP TCI+GYNNIRFDD  SRNI YRNF+D Y +S
Sbjct: 66  GITPQVALERGLIEAEFTAQIHKAFSVPGTCIVGYNNIRFDDEVSRNILYRNFHDPYAYS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRACYALRPEGINWPENDDGFPSFRLEHLTKANGIEHENAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L+++ +P+LF +L ++R+K++L  LIDI  M PLVHVSGMFGA+R NTA +A
Sbjct: 186 YATIAMAKLVKQAQPRLFSFLLEHRSKHKLNTLIDIPAMAPLVHVSGMFGAARGNTAWVA 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    DL+  ++ +RL++  + L+ G  P+P+K VH+NKC
Sbjct: 246 PLAWHPENKNAVIMCDLAGDMSTLLDLNPDEMRERLYSRREALQAGQSPLPVKLVHINKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ ER GID +RCLENL LLRQ   +R++   ++ +    + S DVD++
Sbjct: 306 PVLAPAKTLLPENAERLGIDRQRCLENLQLLRQNPQVREKVVTMFAEAEPFTPSDDVDAR 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+D DR  M  I+ T PE L  L+L F+D R+  L FR+RARN+P TL++ E++ 
Sbjct: 366 LYDGFFSDADRAAMRIIVETRPENLPALDLTFNDSRIEPLLFRFRARNYPATLTDAEQKR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W+ HR++ LT  R++ Y  +L+SL   ++GD  K  L+ AL+EY + ++
Sbjct: 426 WMLHRQEKLTDERVQAYILELESLYNLHEGDVEKMALLKALFEYGKKLV 474


>gi|310768007|gb|ADP12957.1| exonuclease I [Erwinia sp. Ejp617]
          Length = 475

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 249/469 (53%), Positives = 339/469 (72%), Gaps = 1/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG+  +LDRPAQFA +R D  +  I   EVF+C+PADDYLP PEAV IT
Sbjct: 7   QSTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ EAEF+ RIHQ FSVPNTC++GYNN+RFDD  SR++FYRNFYD Y WS
Sbjct: 67  GITPQIARARGLSEAEFTCRIHQLFSVPNTCVVGYNNVRFDDEVSRHLFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDVMRA YA  PDGI WP  DDG  SF+L+ L  ANG+ H NAHDA +DV
Sbjct: 127 WQHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+   ++EK+P+L+++L+ +RNK ++  LIDI  M PLVH+SGMFGA+R NT+ IA
Sbjct: 187 YATIAMAKRVKEKQPRLYDFLFSHRNKQKISTLIDIPQMKPLVHISGMFGAARGNTSWIA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  ++++I C+L GDM    +LD+  L  RL+T  +EL G  PVP+K VH+NKCP
Sbjct: 247 PLAWHPDNRNALITCDLDGDMAPLLELDADALRARLYTRREELDGASPVPLKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           ++ P +  + E  ER GID +RCL+NL LLRQ   +R++   ++      + S DVD+QL
Sbjct: 307 VVAPANTLRAEDAERIGIDRQRCLDNLALLRQHPEVREKVVTLFADAQPFTPSDDVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M+ + +TA E L  L+L F+D R+ +L FR+RARNFP TL + E+Q W
Sbjct: 367 YNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDMEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L+HR++ML   R++ Y  +L+ L  +Y+GD  ++  + AL+ Y+Q ++ 
Sbjct: 427 LQHRRQMLNPERVQGYVQELEILFNQYEGDRARQEQLKALFAYMQELVS 475


>gi|292488688|ref|YP_003531575.1| exodeoxyribonuclease I [Erwinia amylovora CFBP1430]
 gi|292899843|ref|YP_003539212.1| exodeoxyribonuclease I [Erwinia amylovora ATCC 49946]
 gi|291199691|emb|CBJ46811.1| exodeoxyribonuclease I [Erwinia amylovora ATCC 49946]
 gi|291554122|emb|CBA21287.1| exodeoxyribonuclease I [Erwinia amylovora CFBP1430]
          Length = 475

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 247/469 (52%), Positives = 338/469 (72%), Gaps = 1/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG+  +LDRPAQFA +R D  +  I   EVF+C+PADDYLP PEAV IT
Sbjct: 7   QPTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A + G+ EAEF+ RIH  FS  NTC++GYNN+RFDD  SRN+FYRNFYD Y WS
Sbjct: 67  GITPQIARQRGLSEAEFTARIHLLFSAANTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDVMRA YA  PDGI WP  DDG  SF+L+ L  ANG+ H NAHDA +DV
Sbjct: 127 WQHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++EK+P+L+++L+ +RNK ++  LIDI  M PLVH+SGMFGA+R N + IA
Sbjct: 187 YATIAMAKLVKEKQPRLYDFLFSHRNKQKITTLIDIPQMKPLVHISGMFGAARGNASWIA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  ++++I C+L  DM    +LD+  L  RL+T  DEL G  PVP+K VH+NKCP
Sbjct: 247 PLAWHPDNRNALITCDLDADMAPLLELDADALRARLYTRRDELNGASPVPLKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           ++ P +  + E  ER GID +RC +NL LLRQ   +R++   ++ + P  + S DVDSQ+
Sbjct: 307 VVAPANTLRPEDAERIGIDRQRCRDNLALLRQHPEVREKVVTLFAEAPPFTPSDDVDSQI 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M+ + +TA E L  L+L F+D R+ +L FR+RARNFP TL +KE+Q W
Sbjct: 367 YNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDKEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L+HR++M +  R++ Y  +L+ L  +Y+GD+ ++  + AL+ Y+Q ++ 
Sbjct: 427 LQHRRQMFSPERVQGYVQELEMLFNQYEGDQARQEQLKALFAYMQELVS 475


>gi|312172834|emb|CBX81090.1| exodeoxyribonuclease I [Erwinia amylovora ATCC BAA-2158]
          Length = 475

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 248/469 (52%), Positives = 339/469 (72%), Gaps = 1/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG+  +LDRPAQFA +R D  +  I   EVF+C+PADDYLP PEAV IT
Sbjct: 7   QPTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A + G+ EAEF+ RIH  FS  NTC++GYNN+RFDD  SRN+FYRNFYD Y WS
Sbjct: 67  GITPQIARQRGLSEAEFTARIHLLFSAANTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDVMRA YA  PDGI WP  DDG  SF+L+ L  ANG+ H NAHDA +DV
Sbjct: 127 WQHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++EK+P+L+++L+ +RNK ++  LIDI  M PLVH+SGMFGA+R N + IA
Sbjct: 187 YATIAMAKLVKEKQPRLYDFLFSHRNKQKITTLIDIPQMKPLVHISGMFGAARGNASWIA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  ++++I C+L  DM    +LD+  L  RL+T  DEL G  PVP+K VH+NKCP
Sbjct: 247 PLAWHPDNRNALITCDLDADMAPLLELDADALRARLYTRRDELNGASPVPLKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           ++ P +  + E  ER GID +RCL+NL LLRQ   +R++   ++ + P  + S DVDSQ+
Sbjct: 307 VVAPANTLRPEDAERIGIDRQRCLDNLALLRQHPEVREKVVTLFAEAPPFTPSDDVDSQI 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M+ + +TA E L  L+L F+D R+ +L FR+RARNFP TL +KE+Q W
Sbjct: 367 YNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDKEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L+HR++M +  R++ Y  +L+ L  +Y+GD+ ++  + AL+ Y+Q ++ 
Sbjct: 427 LQHRRQMFSPERVQGYVQELEMLFNQYEGDQARQEQLKALFAYMQELVS 475


>gi|259908083|ref|YP_002648439.1| exonuclease I [Erwinia pyrifoliae Ep1/96]
 gi|224963705|emb|CAX55202.1| Exodeoxyribonuclease I [Erwinia pyrifoliae Ep1/96]
 gi|283477982|emb|CAY73898.1| exodeoxyribonuclease I [Erwinia pyrifoliae DSM 12163]
          Length = 475

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 251/469 (53%), Positives = 338/469 (72%), Gaps = 1/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG+  +LDRPAQFA +R D  +  I   EVF+C+PADDYLP PEAV IT
Sbjct: 7   QPTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ EAEF+ RIHQ FSVPNTC++GYNN+RFDD  SRN+FYRNFYD Y WS
Sbjct: 67  GITPQIARARGLSEAEFTCRIHQLFSVPNTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDVMRA YA  PDGI WP  DDG  SF+L+ L  ANG+ H NAHDA +DV
Sbjct: 127 WQHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+   ++EK+P+L+++L+ +RNK ++  LIDI  M PLVH+SGMFGA+R NT+ IA
Sbjct: 187 YATIAMAKRVKEKQPRLYDFLFSHRNKQKISTLIDIPQMKPLVHISGMFGAARGNTSWIA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  ++++I C+L GDM    +LD+  L  RL+T  +EL G  PVP+K VH+NKCP
Sbjct: 247 PLAWHPDNRNALITCDLDGDMAPLLELDADALRARLYTRREELDGASPVPLKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           ++ P +  + E  ER GID +RCL+NL LLRQ   +RD+   ++      + S DVD+QL
Sbjct: 307 VVAPANTLRAEDAERIGIDRQRCLDNLALLRQHPEVRDKVVTLFADAQPFTPSDDVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M+ + +TA E L  L+L F+D R+ +L FR+RARNFP TL + E+Q W
Sbjct: 367 YNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDMEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L+HR++ML   R++ Y  +L+ L  +Y+GD  ++  + AL+ Y+Q ++ 
Sbjct: 427 LQHRRQMLNPERVQGYVQELEMLFNQYEGDRARQEQLKALFAYMQELVS 475


>gi|146312271|ref|YP_001177345.1| exonuclease I [Enterobacter sp. 638]
 gi|145319147|gb|ABP61294.1| Exodeoxyribonuclease I subunit C [Enterobacter sp. 638]
          Length = 476

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 243/468 (51%), Positives = 326/468 (69%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   +LDRP+QFA +R D  +  I   EVF+CKPADDYLP P AV +T
Sbjct: 9   QPSFLFHDYETFGTSPSLDRPSQFAAIRTDADFTIIGEPEVFYCKPADDYLPQPGAVIVT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   GV EAEF+RRIH  F+VPNTC++GYNNIRFDD  +RN+ YRNFYD Y WS
Sbjct: 69  GITPQEAREKGVNEAEFARRIHALFTVPNTCVVGYNNIRFDDEVTRNVLYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N NSRWDLLDVMRA YA  P+GI WP  +DG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQNRNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ +   ++  +PKLFEYL  +RNK +L  LID+  M PLVH+SGMFGA R NT+ +A
Sbjct: 189 YATIEMAKRVKTAQPKLFEYLLSHRNKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L  RL+T   EL     VP+K VH+NKCP
Sbjct: 249 PLAWHPDNRNAVIMVDLAGDITPLLELDSDALRARLYTPKSELGEDAAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  ER GI+ ++CL+NL +LR    +RD+  AI+ +      S +VD+QL
Sbjct: 309 VLAQANTLRPEDAERLGINRQQCLDNLKVLRDNPQVRDKVVAIFAEAEPFVPSDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M+ +L+T P  L  L++ F+D+R+ +L F YRARN+P TL E E++ W
Sbjct: 369 YNGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDESEQERW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           L+HR+ + T   ++ Y  +L+ L  +Y+GD  K+ L+ ALY+Y Q ++
Sbjct: 429 LQHRRNVFTPEYLQCYAQELEMLFTQYEGDAEKQNLLKALYQYAQEIV 476


>gi|238761111|ref|ZP_04622088.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
 gi|238761364|ref|ZP_04622340.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
 gi|238700338|gb|EEP93079.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
 gi|238700591|gb|EEP93331.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
          Length = 476

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 258/470 (54%), Positives = 343/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  F I+DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   SPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+AL  GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQQALAKGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  +DG  SFKL+ L  ANG+EH++AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           +AT+A+  L+++ +P+LF+YLY +R+K+++  LIDI +MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 HATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDISDMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L      +P+K VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLNAQDAAIPLKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ ER GID +RCL NL LLRQ   +R++  A++ +    + S DVD+Q
Sbjct: 307 PVLAPAKTLLAENAERLGIDRQRCLRNLQLLRQNPQIREKVVALFAEAEPFAVSDDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M  IL+T P+ L  L+L F D RL  L FR+RARN+P+TL++ E+Q 
Sbjct: 367 LYNGFFSDADRATMKIILQTDPQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WL HR++ L   R++EY  +L+    +Y+GD+ K  L+ AL++Y + ++ 
Sbjct: 427 WLAHRREALNPERVQEYVLQLEQFYNQYEGDKEKLALLKALFDYARDLVS 476


>gi|262275634|ref|ZP_06053443.1| exodeoxyribonuclease I [Grimontia hollisae CIP 101886]
 gi|262219442|gb|EEY70758.1| exodeoxyribonuclease I [Grimontia hollisae CIP 101886]
          Length = 474

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 232/470 (49%), Positives = 313/470 (66%), Gaps = 3/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYETFG   ALDRP QFAGVR D+ +  I    V +C+P +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETFGTSPALDRPCQFAGVRTDKDFNIIGEPLVIYCQPPNDYLPQPEACLIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A++ G+ E EF  +IH+  S+P TC +GYNNIRFDD  +R   YRNF+D Y W 
Sbjct: 66  GITPQTAVKRGLPEPEFIAKIHEQLSMPGTCAVGYNNIRFDDEVTRYTLYRNFFDPYGWI 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA YA  PDGI+WP  D+G  SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRAAYALRPDGIEWPVNDEGNISFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           +AT+ +   ++  +P+LF+YLY +RNKN+L  LID+ +M PLVHVSGMFG  R NT+ I 
Sbjct: 186 HATIEMAKKLKAAQPRLFDYLYTHRNKNKLTALIDVVSMKPLVHVSGMFGVERGNTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVAWHP  K++VI  +L  D     DLD+  L +RL+T H +L    +PVP+K +H+NKC
Sbjct: 246 PVAWHPDNKNAVIAIDLGRDPSPLFDLDADALRERLYTKHADLAPDELPVPVKLIHINKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           P+L      + E   R GID ++CLENL  L+    +R++   +Y  KP  +SS +VD+ 
Sbjct: 306 PVLADAKTLRPEDAARLGIDRQQCLENLKKLQAHPEIREKLVTLYAEKPEYASSGNVDAA 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+  DR  MD I +T PE L+ L++  SD R+  L FRYRARNFP TL++ E++ 
Sbjct: 366 LYDGFFSPADRSTMDIIRQTKPENLAALDIQVSDPRIKPLLFRYRARNFPWTLTDSEQKQ 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W  HR+     + +  Y   L++L+   + DE K  ++ ++Y Y++ ++ 
Sbjct: 426 WHMHRRDYF-EAELPAYMANLEALAEANQNDEKKFAILKSVYHYIESLVS 474


>gi|238749982|ref|ZP_04611486.1| Exodeoxyribonuclease I [Yersinia rohdei ATCC 43380]
 gi|238711911|gb|EEQ04125.1| Exodeoxyribonuclease I [Yersinia rohdei ATCC 43380]
          Length = 476

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 260/470 (55%), Positives = 341/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F ++DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCTPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P GI WP  +DG  SFKL+ L  ANG+EH+ AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPAGIVWPENEDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           +AT+A+  L+++ +P+LF+YLY +R+K+++  LIDI NMTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 HATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIANMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L      VP+K VH+NKC
Sbjct: 247 PLAWHPDNKNAVIMCDLAGDMSPLLELDSDALRERLYTRRDKLNAQEAAVPLKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ ER GID +RCLENL LLRQ   +R++  A++ +    + S DVD+Q
Sbjct: 307 PVLAPAKTLLAENAERLGIDRQRCLENLQLLRQNPQIREKVVALFAEAEPFAVSDDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M  IL+T P+ L  L+L F D RL  L FR+RARN+P+TL++ E+Q 
Sbjct: 367 LYNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLEPLLFRFRARNYPNTLTDSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WLEHR++ L   R+++Y  +L+    +Y+ D+ K  L+ AL+EY + ++ 
Sbjct: 427 WLEHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARGLVS 476


>gi|238757180|ref|ZP_04618367.1| Exodeoxyribonuclease I [Yersinia aldovae ATCC 35236]
 gi|238704558|gb|EEP97088.1| Exodeoxyribonuclease I [Yersinia aldovae ATCC 35236]
          Length = 476

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 256/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  F I+DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   SPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  ++G  SFKL+ L  ANG+EH++AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+   +++ +P+LF+YLY +R+K+++  LIDI +MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 YATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L      VP+K VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSNTLRERLYTRRDKLGAQDAAVPLKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ ER GID +RCL+NL LLRQ   +R++  A++ +    + S DVD+Q
Sbjct: 307 PVLAPAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M  IL+T P+ L  L+L F D RL  L FR+RARN+P+TL++ E+Q 
Sbjct: 367 LYNGFFSDADRATMKIILQTEPKNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WLEHR++ L   +++ Y  +L+    +Y+ D+ K  L+ AL++Y + ++ 
Sbjct: 427 WLEHRREALNAEKVQAYMLQLEQFYNQYEDDKEKLALLKALFDYARDLVS 476


>gi|238789860|ref|ZP_04633641.1| Exodeoxyribonuclease I [Yersinia frederiksenii ATCC 33641]
 gi|238722056|gb|EEQ13715.1| Exodeoxyribonuclease I [Yersinia frederiksenii ATCC 33641]
          Length = 476

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 264/470 (56%), Positives = 345/470 (73%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  IE   V +CKPADDYLP PEAV IT
Sbjct: 7   QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCKPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  +DG  SFKL+ L  ANG+EH++AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           +AT+A+  L+++ +P+LF+YLY +R+K+++  LIDI NMTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 HATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIVNMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM     LDS  L +RL+T  D+L  G   VP+K VH+NKC
Sbjct: 247 PLAWHPDNKNAVIMCDLAGDMSPLLSLDSDTLRERLYTRRDKLNAGDAAVPLKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQ 359
           P+L P      E+ ER GID +RCLENL LLRQ   +R++  A++ +    + S DVD+Q
Sbjct: 307 PVLAPAKTLLAENAERLGIDRQRCLENLQLLRQNPQIREKVVALFAQAEAFAVSDDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M  IL+T P+ L  L+L F D RL  LFFR+RARN+P+TL++ E+Q 
Sbjct: 367 LYNGFFSDADRATMKIILQTEPQNLPALDLTFQDSRLEPLFFRFRARNYPNTLTDSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WLEHR+  L+  R+++Y  +L+    +Y+ D+ K  L+ AL+EY + ++ 
Sbjct: 427 WLEHRRAALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARSLVS 476


>gi|307130832|ref|YP_003882848.1| exonuclease I [Dickeya dadantii 3937]
 gi|306528361|gb|ADM98291.1| exonuclease I [Dickeya dadantii 3937]
          Length = 476

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 260/468 (55%), Positives = 329/468 (70%), Gaps = 2/468 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F I+DYETFG+  A DRPAQFAGVR D  +  I    V +C+P DDYLPDPEAV ITG
Sbjct: 8   PTFFIHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPTDDYLPDPEAVMITG 67

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A   G  EAEF+R IH+ FS P TCI+GYNNIRFDD  SRN+FYRNFYD Y +SW
Sbjct: 68  ITPQVAQSRGTREAEFARHIHEAFSAPGTCIMGYNNIRFDDEVSRNLFYRNFYDPYAYSW 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWDLLD++RA YA  PDGI WP  DDG  SF+L+ L  ANG+EH  AHDA +DVY
Sbjct: 128 QNGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAHDAMSDVY 187

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+A+  L+++ +PKLF+YLY  RNKN++  LIDI  M PLVHVSGMFGA+R NT+ I P
Sbjct: 188 ATIAMARLLKQSQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVP 247

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           +AWHP  +++VI C+L+GD++   +LD+ +L  RL+T    L +   PVPIK VH+NKCP
Sbjct: 248 LAWHPDNRNAVIVCDLAGDIQPLLELDADELRTRLYTRRALLAEDESPVPIKLVHINKCP 307

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS-SQDVDSQL 360
           +L P    + E  ER GID +RCL NL LLRQ  ++R++  A++        S DVD QL
Sbjct: 308 VLAPASTLRPEDAERLGIDRQRCLNNLQLLRQHGSVREKVVALFADAPPFEVSTDVDLQL 367

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  MD I +T  + L  LNL F+DRR+ EL FRYRARNFP TL E+E+Q W
Sbjct: 368 YDGFFSDADRAAMDIIRKTDSQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQRW 427

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           L HR+ + T  R+++Y + L  L  ++ GDE K  L+ AL+ Y Q ++
Sbjct: 428 LAHRRAVFTTDRVQDYFDALNQLYQQHDGDEKKTALLKALFAYAQQLL 475


>gi|253688149|ref|YP_003017339.1| Exodeoxyribonuclease I [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754727|gb|ACT12803.1| Exodeoxyribonuclease I [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 475

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 255/469 (54%), Positives = 331/469 (70%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  A DRPAQFAGVR D  +  I    V +C+P+DDYLP+PEAV IT
Sbjct: 6   QPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPSDDYLPEPEAVMIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  GV EAEF+R+IH  FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 66  GITPQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLD +RA YA  P+GI WP  +DG  SF+L+ L  ANGI H  AHDA +DV
Sbjct: 126 WQNGNSRWDLLDALRACYALRPEGIIWPENNDGLPSFRLEHLTKANGISHEQAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L ++ +PKLFEYL+  RNKN++  LIDI  M PLVHVSGMFGA+RSNT+ + 
Sbjct: 186 YATIAMAKLFKQAQPKLFEYLFTLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
           P+AWHP  +++VI C+L+GDM    +LDS  L +RL+T  D L+     VP+K VH+NKC
Sbjct: 246 PLAWHPDNRNAVIMCDLAGDMTPLLELDSETLRERLYTRRDALEPDQSAVPLKLVHINKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQ 359
           P+L P +  + E  ER  ID +RCL+NL LLR  T++R++   ++ +    ++S DVD +
Sbjct: 306 PVLAPANTLRPEDAERLSIDRQRCLDNLALLRNNTSVREKVVELFAEAPAFAASDDVDLR 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF D DR  M  I  TAP+ L  L+L F+D RL  L FRYRARNFP TL ++E+Q 
Sbjct: 366 LYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLLFRYRARNFPGTLDDREQQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           WL+HR+ + T  R+++Y ++L +L   ++ D+ K   + ALY Y Q ++
Sbjct: 426 WLQHRRAVFTPERLQDYLSELSNLYQLHEDDKEKMAQLKALYAYAQELV 474


>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040338|gb|ACT57134.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 471

 Score =  408 bits (1048), Expect = e-112,   Method: Composition-based stats.
 Identities = 471/471 (100%), Positives = 471/471 (100%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI
Sbjct: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW
Sbjct: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD
Sbjct: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI
Sbjct: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC
Sbjct: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL
Sbjct: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW
Sbjct: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
           LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE
Sbjct: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471


>gi|332161149|ref|YP_004297726.1| exonuclease I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665379|gb|ADZ42023.1| exonuclease I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 476

 Score =  408 bits (1048), Expect = e-112,   Method: Composition-based stats.
 Identities = 255/470 (54%), Positives = 343/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  ++G  SFKL+ L  ANG+EH++AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+   +++ +P+LF+YLY +R+K+++  LIDI +MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 YATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L      VP+K VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ +R GID +RCL+NL LLRQ   +R++  A++ +    + S DVD+Q
Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M  IL+T  + L  L+L F D RL  L FR+RARN+P+TL++ E+Q 
Sbjct: 367 LYNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WLEHR++ L   ++++Y  +L++L  +Y+ D+ K  L+ AL++Y + ++ 
Sbjct: 427 WLEHRREALNPEKVQDYVLQLEALYNQYEDDKEKLALLKALFDYARDLVS 476


>gi|288549827|ref|ZP_05968320.2| exodeoxyribonuclease I [Enterobacter cancerogenus ATCC 35316]
 gi|288317556|gb|EFC56494.1| exodeoxyribonuclease I [Enterobacter cancerogenus ATCC 35316]
          Length = 478

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV +TG
Sbjct: 12  PTFLFHDYETFGTHPALDRPAQFAAIRTDEDFNIIGEPEVFYCKPADDYLPQPGAVMVTG 71

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ+A   GV EAEF+RRIH  F+VPNTC++GYNNIRFDD  +RNIFYRNFYD Y WSW
Sbjct: 72  ITPQEARDKGVNEAEFARRIHALFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSW 131

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N NSRWDLLD+MRA +A  P+GI WP  ++G TSF+L+ L  ANGIEH NAHDA ADVY
Sbjct: 132 QNRNSRWDLLDIMRACHALRPEGITWPENEEGLTSFRLEHLTRANGIEHSNAHDAMADVY 191

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+A+  L++  +P+LF+YL  +R+K +L  LID+  M PLVH+SGMFGA R NT+ +AP
Sbjct: 192 ATIAMAKLVKTAQPRLFDYLLSHRSKQKLITLIDVPQMKPLVHISGMFGAWRGNTSWVAP 251

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +AWHP  +++VI  +L+GD+    +LDS  L +RL+T  D L  +  VP+K VH+NKCP+
Sbjct: 252 LAWHPDNRNAVIMVDLAGDISPLLELDSDALRERLYTPKDALGDVPAVPVKLVHINKCPV 311

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
           L   +  + E  +R GI+ + CL+NL +LR    +R++  AI+ +      S++VD+QLY
Sbjct: 312 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVREKVVAIFAEAEPFVPSENVDAQLY 371

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           +GFF+D DR  M+ +L+T P  L  L++ F+D+R+ +L F YRARN+P TL E E++ WL
Sbjct: 372 NGFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQERWL 431

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           +HR+ + T   ++ Y  +L+ L   Y GD  K+  + ALY+Y+Q ++
Sbjct: 432 QHRRNIFTPEFLQRYAEELEMLYSHYNGDAEKQAQLKALYQYVQEIV 478


>gi|291326156|ref|ZP_06123420.2| exodeoxyribonuclease I [Providencia rettgeri DSM 1131]
 gi|291315456|gb|EFE55909.1| exodeoxyribonuclease I [Providencia rettgeri DSM 1131]
          Length = 479

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 249/469 (53%), Positives = 325/469 (69%), Gaps = 1/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  IE  EVF+C PADDYLP PEAV IT
Sbjct: 11  QPTFFIHDYETFGKRPALDRPAQFAGVRTDLDFNIIEEPEVFYCAPADDYLPQPEAVMIT 70

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  GV EAEF++RIH  FSVPNTCI+GYNNIRFDD  +RNIFYRNFYD Y +S
Sbjct: 71  GITPQVALSQGVNEAEFAKRIHAAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYS 130

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLD +RA +A  P+G+QWP  +DG  S +L+ L  ANG+ H NAHDA +DV
Sbjct: 131 WQQGNSRWDLLDTLRACFALRPEGLQWPENEDGLPSMRLEHLTKANGVAHENAHDAMSDV 190

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +  L++  +P++F+Y Y  RNKN++ +LIDI  +TPLVHVSGMFGA RS  +L+A
Sbjct: 191 LATINMAKLLKAAQPRMFDYFYQLRNKNKISQLIDIVEITPLVHVSGMFGALRSYVSLVA 250

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  K++VI C+LS D+    +LD  QL  RL+T   EL G  PVP+K VH+NKCP
Sbjct: 251 PLAWHPDNKNAVIMCDLSADISPLVELDVQQLRTRLYTPKAELAGASPVPVKLVHINKCP 310

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
           IL P    + E  ER G+D   C+ NL  LR+   +R++   ++++P   + S DVD+Q+
Sbjct: 311 ILAPEKTLRPEDAERTGVDRDLCMRNLETLRKNPEIRNKLIELFSEPQVFTESDDVDTQI 370

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+  DR  MD I  T+P+ L  L L F D+R+ ELFFRY+ARN+P TLS  E+Q W
Sbjct: 371 YNGFFSPSDRSTMDIIRETSPQNLPALELSFEDKRMKELFFRYKARNYPATLSYDEQQRW 430

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L+HR+   +  R+ EY  ++Q L  E++ DE +   + AL  Y + +  
Sbjct: 431 LQHRRDYFSEERLTEYMQQIQLLLVEHQHDEKRCQQLKALISYARDLAS 479


>gi|123442974|ref|YP_001006949.1| exonuclease I [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122089935|emb|CAL12792.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 476

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 254/470 (54%), Positives = 341/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  ++G  SFKL+ L  ANG+EH +AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHSHAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+   +++ +P+LF+YLY +R+K+++  LIDI +MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 YATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L      VP+K VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ +R GID +RCL+NL LLRQ   +R++  A++ +    + S DVD+Q
Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M  IL+T  + L  L+L F D RL  L FR+RARN+P+TL++ E+Q 
Sbjct: 367 LYNGFFSDADRATMKIILQTKAQNLPALDLTFQDPRLEVLLFRFRARNYPNTLTDSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WL HR++ L   ++++Y  +L++L  +Y+ D+ K  L+ AL++Y + ++ 
Sbjct: 427 WLAHRREALNPEKVQDYVLQLEALYNQYEDDKEKLALLKALFDYARDLVS 476


>gi|318605038|emb|CBY26536.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 476

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 255/470 (54%), Positives = 343/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  ++G  SFKL+ L  ANG+EH++AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+   +++ +P+LF+YLY +R+K+++  LIDI +MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 YATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDITDMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L      VP+K VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ +R GID +RCL+NL LLRQ   +R++  A++ +    + S DVD+Q
Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M  IL+T  + L  L+L F D RL  L FR+RARN+P+TL++ E+Q 
Sbjct: 367 LYNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WLEHR++ L   ++++Y  +L++L  +Y+ D+ K  L+ AL++Y + ++ 
Sbjct: 427 WLEHRREALNPEKVQDYVLQLEALYNQYEDDKEKLALLKALFDYARDLVS 476


>gi|51595906|ref|YP_070097.1| exonuclease I [Yersinia pseudotuberculosis IP 32953]
 gi|170024741|ref|YP_001721246.1| exonuclease I [Yersinia pseudotuberculosis YPIII]
 gi|186894995|ref|YP_001872107.1| exonuclease I [Yersinia pseudotuberculosis PB1/+]
 gi|51589188|emb|CAH20808.1| exodeoxyribonuclease I [Yersinia pseudotuberculosis IP 32953]
 gi|169751275|gb|ACA68793.1| Exodeoxyribonuclease I [Yersinia pseudotuberculosis YPIII]
 gi|186698021|gb|ACC88650.1| Exonuclease domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 476

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 258/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F ++DYETFG+  ALDRPAQFAGVR D  +  +E   V +CKPADDYLP PEAV IT
Sbjct: 7   QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  DDG  SFKL+ L  ANG+EH+ AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L+++ +P+LF+YLY +R+K+++  LIDI  MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L+     +PIK VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ +R GID +RCL+NL LLRQ   +R++  A++ +    + + DVD+Q
Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M  I +T P+ L  L+L F D RL  L FR+RARN+P+TL+  E+Q 
Sbjct: 367 LYNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLNNSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WL+HR++ L+  R+++Y  +L+    +Y+ D+ K  L+ AL+EY + ++ 
Sbjct: 427 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 476


>gi|153949389|ref|YP_001401389.1| exonuclease I [Yersinia pseudotuberculosis IP 31758]
 gi|152960884|gb|ABS48345.1| exodeoxyribonuclease I [Yersinia pseudotuberculosis IP 31758]
          Length = 476

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 259/470 (55%), Positives = 343/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  +E   V +CKPADDYLP PEAV IT
Sbjct: 7   QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  DDG  SFKL+ L  ANG+EH+ AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L+++ +P+LF+YLY +R+K+++  LIDI  MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L+     +PIK VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ +R GID +RCL+NL LLRQ   +R++  A++ +    + + DVD+Q
Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVADDVDTQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M  I +T P+ L  L+L F D RL  L FR+RARN+P+TL++ E+Q 
Sbjct: 367 LYNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WL+HR++ L+  R+++Y  +L+    +Y+ D+ K  L+ AL+EY + ++ 
Sbjct: 427 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 476


>gi|290475866|ref|YP_003468758.1| exonuclease I [Xenorhabdus bovienii SS-2004]
 gi|289175191|emb|CBJ81994.1| exonuclease I, 3'--> 5'-specific; deoxyribophosphodiesterase
           [Xenorhabdus bovienii SS-2004]
          Length = 475

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 245/469 (52%), Positives = 329/469 (70%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  F ++DYETFG+  ALDRPAQFAG+R D  +  IE   V +C PADDYLPDPEAV IT
Sbjct: 6   TPTFYVHDYETFGKHPALDRPAQFAGIRTDSDFNIIEDPLVVYCLPADDYLPDPEAVMIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL+ GV EAEF+R+IH+ FS PNTCIIGYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 66  GITPQLALKKGVNEAEFARQIHEAFSKPNTCIIGYNNIRFDDEVSRNIFYRNFYDPYAYS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDV+RA YA  P+GI WP  +DG  SFKL++L  ANG+EH  AHDA +DV
Sbjct: 126 WQKGNSRWDLLDVLRACYALRPEGIIWPENEDGLPSFKLENLTKANGVEHTQAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+   +++ +P+LF+Y +  RNK ++   IDI  M PLVHVSGMFG  RSN +LIA
Sbjct: 186 YATIAMAKRVKKAQPRLFDYFFQLRNKQKVSNQIDIPQMKPLVHVSGMFGTLRSNISLIA 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
           P+AWHP  +++VI C+L+GD+    +L + +L +RL+T  +EL+ G  PVPIK +H+NKC
Sbjct: 246 PLAWHPTNRNAVIMCDLAGDISPLLELSADELRERLYTRRNELQPGQAPVPIKLMHINKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           PI+ P +  + E  ER G++  +C +NL +LR    +R++   ++++      S +VD++
Sbjct: 306 PIIAPENTLRTEDAERVGLNRDQCAKNLAILRSNPQIREKVVELFSQPEEFPESDNVDTK 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+D D+  M+ I  TAP+ L  L+L F D R+  L FRYRARN+P TL+  E+Q 
Sbjct: 366 LYSGFFSDADKTAMEIIRETAPKNLPALDLTFQDPRIKTLLFRYRARNYPATLNYDEQQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           WL HR+++LT+  I +Y   ++ L  EY+ DE K   + AL +Y   + 
Sbjct: 426 WLYHRREILTQENISQYLAAIEQLFVEYQSDEEKCRQLKALVDYAVQLA 474


>gi|238795750|ref|ZP_04639264.1| Exodeoxyribonuclease I [Yersinia mollaretii ATCC 43969]
 gi|238720476|gb|EEQ12278.1| Exodeoxyribonuclease I [Yersinia mollaretii ATCC 43969]
          Length = 476

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 254/470 (54%), Positives = 341/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F ++DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEF+R+I+Q F+VP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFARQINQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  +DG  SFKL+ L  ANG+EH++AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIIWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           +AT+A+  L+++ +P+LF+YLY +R+K+++  LIDI  MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 HATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L      +P+K VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAIPLKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ ER GID +RCL+NL LLRQ   +R++  A++ +    + S DVD+Q
Sbjct: 307 PVLAPAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M  IL+T  + L  L+L F D RL  L FR+RARN+P+TL++ E++ 
Sbjct: 367 LYNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEPLLFRFRARNYPNTLTDSEQKR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WLEHR++ L   R+++Y  +L+    +Y+ D+ K  L+ AL+EY + ++ 
Sbjct: 427 WLEHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 476


>gi|300903879|ref|ZP_07121780.1| exonuclease [Escherichia coli MS 84-1]
 gi|301307139|ref|ZP_07213168.1| exonuclease [Escherichia coli MS 124-1]
 gi|300404137|gb|EFJ87675.1| exonuclease [Escherichia coli MS 84-1]
 gi|300837654|gb|EFK65414.1| exonuclease [Escherichia coli MS 124-1]
 gi|315253362|gb|EFU33330.1| exonuclease [Escherichia coli MS 85-1]
          Length = 499

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 328/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 25  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 85  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 144

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 204

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 205 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 264

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 265 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 324

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R+   AI+ +    + S
Sbjct: 325 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPS 384

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 385 DNVDAQLYSGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 444

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 445 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 499


>gi|242239639|ref|YP_002987820.1| exonuclease I [Dickeya dadantii Ech703]
 gi|242131696|gb|ACS85998.1| Exodeoxyribonuclease I [Dickeya dadantii Ech703]
          Length = 476

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 250/467 (53%), Positives = 323/467 (69%), Gaps = 2/467 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F I+DYETFG+  A DRPAQFAG+R D+ +  I    V +C+PADDYLPDPEAV ITGI
Sbjct: 9   TFFIHDYETFGKHPAKDRPAQFAGIRTDQDFNVIGEPVVIYCQPADDYLPDPEAVMITGI 68

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A   G+ E +F+R+IH  FS P TCI+GYNNIRFDD  SRN+FYRNF D Y +SW 
Sbjct: 69  TPQLASSKGIGEVDFARQIHDAFSTPGTCIMGYNNIRFDDEVSRNLFYRNFIDPYAYSWQ 128

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD +RA YA  P+GI WP  ++G  SF+L+ L  ANGIEH +AHDA +DVYA
Sbjct: 129 NGNSRWDLLDALRACYALRPEGIVWPENEEGFPSFRLEHLTRANGIEHEHAHDAMSDVYA 188

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  L ++ +P+LF+YLY  RNKN++  LIDI  M PLVHVSGMFGA+R NT+ I P+
Sbjct: 189 TIAMARLFKQTQPRLFDYLYQLRNKNKVNALIDIAEMKPLVHVSGMFGAARGNTSWIVPL 248

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHP  +++VI C+L+GD+    +L +  L  RL+T  D L +   PVPIK VH+NKCP+
Sbjct: 249 AWHPENRNAVIVCDLAGDIDPLLNLSADALRTRLYTRRDLLGENESPVPIKLVHINKCPV 308

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQLY 361
           L P    + E   R G+D +RCL+NL LLRQ   +R++  A++        + DVD QLY
Sbjct: 309 LAPAATLRPEDAARLGVDRQRCLDNLKLLRQHPLVREKVVALFADAPAFEPAADVDLQLY 368

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGFF D DR  M  I  TAP+ L  L L F+DRR+ EL FRYRARNFP TL ++E+Q WL
Sbjct: 369 DGFFGDADRAAMTIIRETAPQHLPALKLQFADRRMEELLFRYRARNFPGTLDDQEQQRWL 428

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            HR+++ T  R++ Y   L+SL   +  DE K  L+ AL+ Y Q ++
Sbjct: 429 RHRREIFTPERLQSYSETLESLYQIHADDEKKIALLKALFTYAQQLV 475


>gi|317048759|ref|YP_004116407.1| exodeoxyribonuclease I [Pantoea sp. At-9b]
 gi|316950376|gb|ADU69851.1| Exodeoxyribonuclease I [Pantoea sp. At-9b]
          Length = 473

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 248/467 (53%), Positives = 327/467 (70%), Gaps = 1/467 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+ +DYETFG+  +LDRPAQFAG+R D+ +  I   +VF+C+PADDYLP PEAV ITGI
Sbjct: 7   TFLFHDYETFGKSPSLDRPAQFAGLRTDKDFNAIGEPQVFYCQPADDYLPQPEAVMITGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A   GV EA F+ RIH  FS P TC++GYNN+RFDD  +RNIFYRNF+D Y WSW 
Sbjct: 67  TPQTAQARGVTEAAFAERIHGLFSEPQTCVVGYNNVRFDDEVTRNIFYRNFFDPYGWSWQ 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLDVMRA YA  P+GI WP  DDG  SFKL+ L  ANG+ H  AHDA +DVYA
Sbjct: 127 NGNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTKANGVAHEQAHDAMSDVYA 186

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           TLA+  L++EK+PKLFE+L+ +RNK +L  LIDI  M PLVHVSGMFGA+R NT+ + P+
Sbjct: 187 TLAMAKLVKEKQPKLFEFLFSHRNKQKLMTLIDIPQMKPLVHVSGMFGAARGNTSWVVPL 246

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           AWHP  ++++I  +L+GDM     L   +L +RL+T H EL     VPIK VH+NKCP+L
Sbjct: 247 AWHPDNRNALIVADLAGDMSPLLTLSPDELRERLYTRHSELGDQAAVPIKLVHINKCPVL 306

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362
            P +  + E  ER  ID + CL NL LLRQ   +R+    ++ +    + S DVD+QLY+
Sbjct: 307 APANTLRPEDAERLNIDRQHCLANLALLRQHAEVRENVVTLFAEAEPFTPSDDVDAQLYN 366

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
           GFF+D DR  M+ + +T  + L  L+L F D+R+  L FRYRARNFP TL + E+Q WL+
Sbjct: 367 GFFSDADRAAMNIVRQTPAQNLPALDLTFDDKRIARLLFRYRARNFPGTLDDAEQQRWLQ 426

Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           HR++ L   R++ +  +L+SL+  ++G+  K GL+ ALY Y Q ++ 
Sbjct: 427 HRREALNAERVQAFLLELESLASLHEGNAEKLGLLKALYLYAQELVS 473


>gi|300947322|ref|ZP_07161523.1| exonuclease [Escherichia coli MS 116-1]
 gi|300453074|gb|EFK16694.1| exonuclease [Escherichia coli MS 116-1]
          Length = 475

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 328/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E   R GI+ + CL+NL +LR+   +R+   AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDANRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|188495966|ref|ZP_03003236.1| exodeoxyribonuclease I [Escherichia coli 53638]
 gi|188491165|gb|EDU66268.1| exodeoxyribonuclease I [Escherichia coli 53638]
          Length = 475

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|157161503|ref|YP_001458821.1| exonuclease I [Escherichia coli HS]
 gi|157067183|gb|ABV06438.1| exodeoxyribonuclease I [Escherichia coli HS]
          Length = 475

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|194431379|ref|ZP_03063671.1| exodeoxyribonuclease I [Shigella dysenteriae 1012]
 gi|194420204|gb|EDX36281.1| exodeoxyribonuclease I [Shigella dysenteriae 1012]
 gi|332091578|gb|EGI96659.1| exodeoxyribonuclease I [Shigella dysenteriae 155-74]
          Length = 475

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 245/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  ER GID + CL+NL +LR+   +RD+  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLE+R+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEYRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|170682338|ref|YP_001743128.1| exonuclease I [Escherichia coli SMS-3-5]
 gi|301019172|ref|ZP_07183372.1| exonuclease [Escherichia coli MS 69-1]
 gi|170520056|gb|ACB18234.1| exodeoxyribonuclease I [Escherichia coli SMS-3-5]
 gi|300399365|gb|EFJ82903.1| exonuclease [Escherichia coli MS 69-1]
          Length = 475

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 329/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  ER GI  + CL+NL +LR+   +RD+  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDAERLGIARQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           + E+Q WLEHR+++ T   ++ Y  ++Q L+  Y  D+ K  L+ AL++Y + ++
Sbjct: 421 DNEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQLYADDKEKVALLKALWQYAEEIV 475


>gi|170019660|ref|YP_001724614.1| exonuclease I [Escherichia coli ATCC 8739]
 gi|194436340|ref|ZP_03068442.1| exodeoxyribonuclease I [Escherichia coli 101-1]
 gi|169754588|gb|ACA77287.1| Exodeoxyribonuclease I [Escherichia coli ATCC 8739]
 gi|194425068|gb|EDX41053.1| exodeoxyribonuclease I [Escherichia coli 101-1]
          Length = 475

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|307138678|ref|ZP_07498034.1| exonuclease I [Escherichia coli H736]
          Length = 475

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|290508687|ref|ZP_06548058.1| exodeoxyribonuclease I [Klebsiella sp. 1_1_55]
 gi|289778081|gb|EFD86078.1| exodeoxyribonuclease I [Klebsiella sp. 1_1_55]
          Length = 474

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 250/465 (53%), Positives = 330/465 (70%), Gaps = 1/465 (0%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+ +DYETFG   +LDRPAQFA +R D +   I   EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10  FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ+AL  G  EA F+RRIH  F+VP TCI+GYNN+RFDD  +RNIFYRNFYD Y WSW +
Sbjct: 70  PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            NSRWDLLDVMRA YA  P+GI WP  D+G  SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           +A+  L++ ++P+LF+YLY +RNK +L  LID+  M PLVHVSGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
           WHP  +++VI  +L+GDM    +LD+  L +RL+TS  EL  L   PIK VHLNKCP+L 
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTSRAELGDLPAAPIKLVHLNKCPVLA 309

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
             +  + +  +R GI  +RCLEN  LLR    +R++  A+Y +      S++VD+QLY+G
Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
           FF+D DR  M  +L T P  L  L++ F+D+R+  L F YRARNFP TL E E+Q WLEH
Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWLEH 429

Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           R+++ T   ++ Y ++LQ L  +Y  D+ K   + AL++Y Q ++
Sbjct: 430 RRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474


>gi|227357738|ref|ZP_03842087.1| exodeoxyribonuclease I [Proteus mirabilis ATCC 29906]
 gi|227162067|gb|EEI47081.1| exodeoxyribonuclease I [Proteus mirabilis ATCC 29906]
          Length = 476

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 248/470 (52%), Positives = 325/470 (69%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  F IYDYETFG   A+DRPAQFAGVR D  +  IE   V +CKP DDYLP PEAV IT
Sbjct: 7   TPTFYIYDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL++GV EAEF+R+IHQ FS PN+CI+GYNN+RFDD  +RNI YRNFYD Y +S
Sbjct: 67  GITPQIALKNGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDV+RA YA  P+GI WP  DDG  SF+L+ L  ANGI H NAHDA +DV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGISHENAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+   +++ +P++F+Y ++ R+K +++ LIDI  MTPLVHVSGMFGA+RSN +L+A
Sbjct: 187 YATIAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPLVHVSGMFGAARSNLSLVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
           P+AWHP  +++VI C+L+ D+     L S QL +RL+T   EL     PVPIK +H+NKC
Sbjct: 247 PLAWHPDNRNAVIVCDLAADISPLLTLTSEQLRERLYTPRSELSADEPPVPIKLLHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PI+ P +  + +  +R G+D   CL N  +L     +R++   I+  +   + + DVD+Q
Sbjct: 307 PIVAPKNTLRSQDADRIGLDIDNCLNNQAILLSNPEIRNKVVEIFAQQTPFTPADDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M+ I  T P+ L  LNL F D R+  LFFRYRARNFP TL+  E+Q 
Sbjct: 367 LYNGFFSDNDRSAMEIIRSTQPQNLPALNLTFEDPRMEPLFFRYRARNFPATLTYDEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WL HRK+ LT  ++ EY N +Q L+ E+  +E K   +  LY Y Q +  
Sbjct: 427 WLAHRKEQLTPEKLTEYINTIQLLAEEHSDNEEKLKQLQELYLYAQEIAS 476


>gi|15832067|ref|NP_310840.1| exonuclease I [Escherichia coli O157:H7 str. Sakai]
 gi|168764097|ref|ZP_02789104.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4501]
 gi|217329517|ref|ZP_03445596.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. TW14588]
 gi|291283248|ref|YP_003500066.1| Exonuclease I [Escherichia coli O55:H7 str. CB9615]
 gi|13362281|dbj|BAB36236.1| exonuclease I [Escherichia coli O157:H7 str. Sakai]
 gi|189365832|gb|EDU84248.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4501]
 gi|217317285|gb|EEC25714.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. TW14588]
 gi|226237418|dbj|BAH46940.1| exonuclease I [Escherichia coli O55:H7]
 gi|290763121|gb|ADD57082.1| Exonuclease I [Escherichia coli O55:H7 str. CB9615]
 gi|320646788|gb|EFX15665.1| exonuclease I [Escherichia coli O157:H- str. 493-89]
 gi|320652067|gb|EFX20410.1| exonuclease I [Escherichia coli O157:H- str. H 2687]
 gi|320657429|gb|EFX25227.1| exonuclease I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663245|gb|EFX30550.1| exonuclease I [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668145|gb|EFX35014.1| exonuclease I [Escherichia coli O157:H7 str. LSU-61]
 gi|326338368|gb|EGD62196.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1044]
 gi|326347111|gb|EGD70844.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1125]
          Length = 475

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|300920252|ref|ZP_07136698.1| exonuclease [Escherichia coli MS 115-1]
 gi|301018905|ref|ZP_07183135.1| exonuclease [Escherichia coli MS 196-1]
 gi|299882459|gb|EFI90670.1| exonuclease [Escherichia coli MS 196-1]
 gi|300412754|gb|EFJ96064.1| exonuclease [Escherichia coli MS 115-1]
          Length = 499

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 25  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 85  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 144

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 204

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 205 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 264

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 265 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 324

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 325 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 384

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 385 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 444

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 445 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499


>gi|317491333|ref|ZP_07949769.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920880|gb|EFV42203.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 474

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 257/474 (54%), Positives = 339/474 (71%), Gaps = 5/474 (1%)

Query: 1   MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M+     F+I+DYETFG+  ALDRPAQFAGVR D  +  IE   V +C+P+DDYLP PEA
Sbjct: 1   MSKAAPTFLIHDYETFGQHPALDRPAQFAGVRTDADFNIIEEPLVIYCRPSDDYLPQPEA 60

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V ITGITPQ AL  GV EAEFSR+I+Q FSVP TCI+GYNNIRFDD  SRNIFYRNFYD 
Sbjct: 61  VMITGITPQVALTRGVSEAEFSRQINQIFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDP 120

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           Y +SW NGNSRWDLLDV+R  YA  P+GI WP  ++G  SFKL+ L+ ANGIEH NAHDA
Sbjct: 121 YAYSWQNGNSRWDLLDVLRTCYALRPEGINWPENEEGLPSFKLEHLSKANGIEHENAHDA 180

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
            ADVYAT+AL  L+++ +PKLF+YL+  RNK+++  L+DI NM PLVH+SGMFGA R NT
Sbjct: 181 MADVYATIALAKLVKQAQPKLFDYLFQLRNKHKVSALLDIANMKPLVHISGMFGALRGNT 240

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV-PIKEVH 296
           +L+AP+AWHP  K++VI C+L+GDM    +LD+  L +RL+T   EL+   P  P+K VH
Sbjct: 241 SLVAPLAWHPDNKNAVIMCDLAGDMSPLLELDTDALRERLYTRRSELRSDQPPAPLKLVH 300

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQD 355
           +NKCP+L P    + E+ ER G+D +RC++NL LLR    LRD+  A++ +     +S D
Sbjct: 301 INKCPVLAPDQTLRPENAERLGLDRQRCMDNLQLLRNHPELRDKVVAVFAEAEPFKASDD 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           VD+QLYDGFF+D DR  M  I  T P+ L  L+L F+D+R+  L FRYRARNFP TL++ 
Sbjct: 361 VDAQLYDGFFSDADRSAMQIIRETLPQNLPALDLTFNDKRVLPLLFRYRARNFPTTLTDD 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           E++ W  HR+ +LT  R++ Y ++L+ L   ++ +  K   +  L+EY + ++ 
Sbjct: 421 EQRRWQLHRQAVLTPERLQAYIHQLEELYNRHEDEPEKLAQLKELFEYARQLVN 474


>gi|238784349|ref|ZP_04628360.1| Exodeoxyribonuclease I [Yersinia bercovieri ATCC 43970]
 gi|238714777|gb|EEQ06778.1| Exodeoxyribonuclease I [Yersinia bercovieri ATCC 43970]
          Length = 476

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 255/470 (54%), Positives = 337/470 (71%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  +DG  SFKL+ L  ANG+EH++AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIIWPENEDGLPSFKLEHLTRANGVEHLHAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           +AT+A+  L+++ +P+LF+YLY +R+K+++  LIDI  MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 HATIAMAKLVKQVQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D L      VP+K VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDRLSAQDAAVPLKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ ER GID + CL NL LLRQ   +R++  A++ +    + S DVD+Q
Sbjct: 307 PVLAPAKTLLPENAERLGIDRQHCLRNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M  IL+T P+ L  L+L F D RL  L FR+RARN+P+TL+  E++ 
Sbjct: 367 LYNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLEPLLFRFRARNYPNTLTYSEQKR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WLEHR++ L    +++Y  +L+    +Y+ D+ K  L+ AL++Y + ++ 
Sbjct: 427 WLEHRREALNPELVQDYVLQLEQFYNQYEDDKEKLALLKALFDYAKGLVS 476


>gi|238793487|ref|ZP_04637112.1| Exodeoxyribonuclease I [Yersinia intermedia ATCC 29909]
 gi|238727260|gb|EEQ18789.1| Exodeoxyribonuclease I [Yersinia intermedia ATCC 29909]
          Length = 476

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 260/470 (55%), Positives = 341/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEFSR+IHQ F+VP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFSRQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  +DG  SFKL+ L  ANG+EH++AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           +AT+A+  L+++ +P+LF+YLY +R+K+++  LIDI  MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 HATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM     LDS  L +RL+T  D+L      VP+K VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLALDSDTLRERLYTRRDKLNTQDAAVPLKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ ER GID +RCL+NL LLRQ   +R++  A++ +    + S DVD+Q
Sbjct: 307 PVLAPAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M  IL+T P+ L  L+L F D RL  LFFR+RARN+P+TL++ E+Q 
Sbjct: 367 LYNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLETLFFRFRARNYPNTLTDSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WL HR++ L   R+++Y  +L+    +Y+ D+ K  L+ AL+EY + ++ 
Sbjct: 427 WLAHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARGLVS 476


>gi|300824755|ref|ZP_07104860.1| exonuclease [Escherichia coli MS 119-7]
 gi|300522742|gb|EFK43811.1| exonuclease [Escherichia coli MS 119-7]
          Length = 499

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 25  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 85  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 144

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 204

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 205 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 264

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 265 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 324

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 325 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 384

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 385 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 444

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 445 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499


>gi|212712795|ref|ZP_03320923.1| hypothetical protein PROVALCAL_03892 [Providencia alcalifaciens DSM
           30120]
 gi|212684487|gb|EEB44015.1| hypothetical protein PROVALCAL_03892 [Providencia alcalifaciens DSM
           30120]
          Length = 479

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 251/469 (53%), Positives = 327/469 (69%), Gaps = 1/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  I   EVF+CKP DDYLP PEAV IT
Sbjct: 11  QPTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIGEPEVFYCKPTDDYLPQPEAVMIT 70

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A+ +GV EAEF++RIHQ FSVPNTCI+GYNNIRFDD  +RNIFYRNFYD Y +S
Sbjct: 71  GITPQIAMANGVNEAEFAKRIHQAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYS 130

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLD +RA +A  P+GI WP  DDG  S +L+ L  ANG+ H NAHDA +DV
Sbjct: 131 WQQGNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVSHENAHDAMSDV 190

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +  L+++ +P++F+Y Y  RNKN++ +LIDI +MTPLVHVSGMFGA RS  +L+ 
Sbjct: 191 LATINMAKLLKQAQPRMFDYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYVSLVT 250

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  K++VI C+LSGDM     L + +L +RL+T   EL   +PVPIK VH+NKCP
Sbjct: 251 PLAWHPENKNAVIMCDLSGDMSPLLTLSADELRERLYTPKAELGDDLPVPIKLVHINKCP 310

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL PI+  +    ER G+D   C+ NL LLR+  ++R++   +++       S DVDSQ+
Sbjct: 311 ILAPINTLRTVDAERTGLDRDLCMRNLELLRKNPDVRNKLIELFSVGQQFEESNDVDSQI 370

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+  DR  MD I  TAP+ L  L+L F D+R+ ELFFRY+ARN+P TLS  E+Q W
Sbjct: 371 YNGFFSPSDRSTMDIIRETAPQNLPALDLSFEDKRMKELFFRYKARNYPSTLSYDEQQRW 430

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L+HR+   T +R+ +Y  ++Q L G +  DE +   + AL  Y   +  
Sbjct: 431 LQHRRDYFTEARLTDYLQQIQLLMGVHHEDEKRCQQLKALVNYAYELAS 479


>gi|300717468|ref|YP_003742271.1| exodeoxyribonuclease I [Erwinia billingiae Eb661]
 gi|299063304|emb|CAX60424.1| Exodeoxyribonuclease I [Erwinia billingiae Eb661]
          Length = 475

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 248/467 (53%), Positives = 338/467 (72%), Gaps = 1/467 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG+  +LDRPAQFAG+R D  +  I   EVF+C+PADDYLP PEAV IT
Sbjct: 7   QPTFLFHDYETFGKSPSLDRPAQFAGIRTDMDFNIIGEPEVFYCQPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ EA F++RIH  FS PNTCI+GYNN+RFDD  +RN+ YRNFYD Y W+
Sbjct: 67  GITPQLAKAKGISEAAFTKRIHALFSEPNTCIVGYNNVRFDDEVTRNLLYRNFYDPYGWA 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANG+ H NAHDA +DV
Sbjct: 127 WQHGNSRWDLLDVMRACYALRPEGIAWPENDDGLPSFRLEHLTKANGVSHENAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++EK+P+L+++L+ +RNKN++  LIDI  M PLVH+SGMFGA R NT+ IA
Sbjct: 187 YATIAMAKLVKEKQPRLYDFLFTHRNKNKITALIDIPQMKPLVHISGMFGAFRGNTSWIA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  K+++I C+L+GD+    +LD+  L +RL+T  +EL    PVP+K +H+NKCP
Sbjct: 247 PLAWHPVNKNALITCDLAGDITPLLELDADTLRERLYTRREELGDNAPVPVKLMHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           ++ P +  + E  ER GID KRCL+NL +LRQ   +R++  A++ +    + S DVD+QL
Sbjct: 307 VVAPANTLRPEDAERLGIDRKRCLDNLAILRQHPEVREKVVALFAEAEPFAGSSDVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M+ I +T PE L  L+L F+D R+ +L FR+RARN+P TL E E+  W
Sbjct: 367 YDGFFSDADRNTMNIIQQTLPENLPALDLTFNDARIEKLLFRFRARNYPGTLDEAEQTRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           L+HR++ L   R++ Y  +L+ L  +Y+GD GKE  +  L++Y+Q +
Sbjct: 427 LQHRREALNPERVQSYVQELEMLFNQYEGDIGKEKDLKMLFQYVQNL 473


>gi|260855993|ref|YP_003229884.1| exonuclease I [Escherichia coli O26:H11 str. 11368]
 gi|257754642|dbj|BAI26144.1| exonuclease I [Escherichia coli O26:H11 str. 11368]
 gi|323152400|gb|EFZ38688.1| exodeoxyribonuclease I [Escherichia coli EPECa14]
          Length = 475

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 241/475 (50%), Positives = 329/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+    G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDTAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|254228381|ref|ZP_04921808.1| exonuclease family [Vibrio sp. Ex25]
 gi|262394467|ref|YP_003286321.1| exodeoxyribonuclease I [Vibrio sp. Ex25]
 gi|151939187|gb|EDN58018.1| exonuclease family [Vibrio sp. Ex25]
 gi|262338061|gb|ACY51856.1| exodeoxyribonuclease I [Vibrio sp. Ex25]
          Length = 473

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 226/469 (48%), Positives = 313/469 (66%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNVIGEPLVMYCQPPADYLPSPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQK +++G+ E EF  +IH   + PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDV+RA +A  P+G++WP  +DG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y +  R K +L +L+DI NMTPL+HVSGM G     T+ I 
Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           PVAWHP   ++VI  +L+ D +   +L + +L +RL+T  ++L  L+PVP+K VHLNKCP
Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P      E+ E  GID ++CL NL LLRQ   +R++  ++++ +     S DVD+QL
Sbjct: 306 ILAPAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  DR  MD I  T P  L+ L++ F D+R+  L FRYRARNFP TL E+E++ W
Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
             H ++ +  S+IEEY   L++L  E++ DE K  ++ ++Y Y++ +  
Sbjct: 426 ALHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473


>gi|320641419|gb|EFX10863.1| exonuclease I [Escherichia coli O157:H7 str. G5101]
          Length = 475

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|300956271|ref|ZP_07168577.1| exonuclease [Escherichia coli MS 175-1]
 gi|300316894|gb|EFJ66678.1| exonuclease [Escherichia coli MS 175-1]
          Length = 491

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPS 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 491


>gi|331642634|ref|ZP_08343769.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli H736]
 gi|331039432|gb|EGI11652.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli H736]
          Length = 491

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 491


>gi|218558892|ref|YP_002391805.1| exonuclease I [Escherichia coli S88]
 gi|218365661|emb|CAR03398.1| exonuclease I [Escherichia coli S88]
          Length = 475

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGIHWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|288934485|ref|YP_003438544.1| exodeoxyribonuclease I [Klebsiella variicola At-22]
 gi|288889194|gb|ADC57512.1| Exodeoxyribonuclease I [Klebsiella variicola At-22]
          Length = 474

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 249/465 (53%), Positives = 329/465 (70%), Gaps = 1/465 (0%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+ +DYETFG   +LDRPAQFA +R D +   I   EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10  FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ+AL  G  EA F+RRIH  F+VP TCI+GYNN+RFDD  +RNIFYRNFYD Y WSW +
Sbjct: 70  PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            NSRWDLLDVMRA YA  P+GI WP  D+G  SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           +A+  L++ ++P+LF+YLY +RNK +L  LID+  M PLVH+SGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHISGMFGAARGNTSLVAPLA 249

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
           WHP  +++VI  +L+GDM    +LD+  L +RL+T   EL  L   PIK VHLNKCP+L 
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
             +  + +  ER GI  +RCLEN  LLR    +R++  A+Y +      S++VD+QLY+G
Sbjct: 310 QANTLRPQDAERLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
           FF+D DR  M  +L T P  L  L++ F+D+R+  L F YRARNFP TL E E+Q WLEH
Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWLEH 429

Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           R+++ T   ++ Y ++LQ L  +Y  D+ K   + AL++Y Q ++
Sbjct: 430 RRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474


>gi|193071491|ref|ZP_03052403.1| exodeoxyribonuclease I [Escherichia coli E110019]
 gi|192955213|gb|EDV85704.1| exodeoxyribonuclease I [Escherichia coli E110019]
          Length = 475

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|85059110|ref|YP_454812.1| exonuclease I [Sodalis glossinidius str. 'morsitans']
 gi|84779630|dbj|BAE74407.1| exonuclease I [Sodalis glossinidius str. 'morsitans']
          Length = 473

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 281/466 (60%), Positives = 345/466 (74%), Gaps = 1/466 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+++DYETFG+  ALDRPAQFAG+R D Q+E +   EVFFC+PADDYLPDPEAV ITG
Sbjct: 8   PTFLVHDYETFGKYPALDRPAQFAGIRADSQFETLGEPEVFFCRPADDYLPDPEAVMITG 67

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ+ALRDGV EAEF+RRIHQ FSVP+TCI+GYNN+RFDD  SRN+FYRNFYD Y WSW
Sbjct: 68  ITPQQALRDGVTEAEFARRIHQLFSVPDTCILGYNNVRFDDEVSRNLFYRNFYDPYGWSW 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             GNS WDLLDV+RA YA  P+GI+WP  DDG  SF+L+ L  ANGIEH NAHDA ADVY
Sbjct: 128 QQGNSCWDLLDVVRACYALRPNGIEWPLNDDGLPSFRLEHLTRANGIEHANAHDAMADVY 187

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           ATLA+  L+R+ +PKLF+YLY +R K QL+ L+DI  M PLVHVSGMFGA+R NTA IAP
Sbjct: 188 ATLAMAKLMRQAQPKLFDYLYRHRGKRQLKSLVDIATMKPLVHVSGMFGAARGNTAWIAP 247

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +AWHP   +++I C+LSGDM+V  DLDS  L  RL+T  D L     VP+K V+LNKCP+
Sbjct: 248 LAWHPDNPNALIVCDLSGDMQVLADLDSDALRTRLYTRRDALGDNTAVPLKLVYLNKCPV 307

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361
           L P +  +    ER GI  +RCL+NLT LR +  LR++  A++ +     SS DVD+QLY
Sbjct: 308 LAPANTLQPMDAERLGIQRQRCLDNLTWLRARPELREKVVALFAESAPFKSSDDVDAQLY 367

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGFF+D DR  M+ IL TAPE L  L++ F D RL  L FRYRARNFPHTL   E+  WL
Sbjct: 368 DGFFSDADRAAMEIILATAPENLPALDISFVDARLKPLLFRYRARNFPHTLDHNEQLRWL 427

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           EHRK   T+ R+E Y  +L++L   ++GDE K  L+ AL+EYLQ +
Sbjct: 428 EHRKTRFTQPRLEAYVQQLETLYLAHEGDEHKTRLLRALFEYLQTL 473


>gi|251789913|ref|YP_003004634.1| exonuclease I [Dickeya zeae Ech1591]
 gi|247538534|gb|ACT07155.1| Exodeoxyribonuclease I [Dickeya zeae Ech1591]
          Length = 476

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 258/468 (55%), Positives = 331/468 (70%), Gaps = 2/468 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F ++DYETFG+  A DRPAQFAGVR D  +  I    V +C+PADDYLPDP+AV ITG
Sbjct: 8   PTFFVHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPADDYLPDPQAVMITG 67

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A   G+ E EF+R IH+ FSVP TCI+GYNNIRFDD  SRN+FYRNF D Y +SW
Sbjct: 68  ITPQIAQSRGIRETEFARHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFIDPYAYSW 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWDLLD++RA YA  PDGI WP  DDG  SF+L+ L  ANG+EH  AHDA +DVY
Sbjct: 128 QNGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAHDAMSDVY 187

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+A+  L+++ +PKLF+YLY  RNKN++  LIDI  M PLVHVSGMFGA+R NT+ I P
Sbjct: 188 ATIAMARLLKQAQPKLFDYLYGLRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVP 247

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           +AWHP  +++VI C+L+GD++    LD+ +L  RL+T  D L +   PVPIK VH+NKCP
Sbjct: 248 LAWHPDNRNAVIVCDLAGDIQPLLSLDADELRTRLYTRRDLLAEDESPVPIKLVHINKCP 307

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L P    + E  ER GID + CL NL LLRQ +++R++  A++   P   +++DVD QL
Sbjct: 308 VLAPASTLRPEDAERLGIDRQHCLNNLQLLRQNSSVREKVVALFADAPPFEAAKDVDLQL 367

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  I +T  + L  LNL F+DRR+ EL FRYRARNFP TL E+E+Q W
Sbjct: 368 YDGFFSDADRAAMAIIRKTDAQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQRW 427

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           L HR+ M T  R+++Y + L  L   + GDE K  L+ AL+ Y Q ++
Sbjct: 428 LAHRRAMFTTERVQDYFDTLNQLYQLHDGDEKKAALLKALFAYAQQLL 475


>gi|320175604|gb|EFW50697.1| Exodeoxyribonuclease I [Shigella dysenteriae CDC 74-1112]
          Length = 475

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|293410372|ref|ZP_06653948.1| sbcB [Escherichia coli B354]
 gi|291470840|gb|EFF13324.1| sbcB [Escherichia coli B354]
          Length = 475

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+++  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|256017814|ref|ZP_05431679.1| exonuclease I [Shigella sp. D9]
          Length = 475

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LFEYL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ + P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVVPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|262040031|ref|ZP_06013293.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042608|gb|EEW43617.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 474

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 248/465 (53%), Positives = 330/465 (70%), Gaps = 1/465 (0%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+ +DYETFG   +LDRPAQFA +R D +   +   EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10  FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ+AL  G  EA F+RRIH  F+VP TCI+GYNN+RFDD  +RNIFYRNFYD Y WSW +
Sbjct: 70  PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            NSRWDLLDVMRA YA  P+GI WP  D+G  SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           +A+  L++ ++P+LF+YLY +RNK +L  LID+  M PLVHVSGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
           WHP  +++VI  +L+GDM    +LD+  L +RL+T   EL  L   PIK VHLNKCP+L 
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
             +  + +  +R GI  +RCLEN  LLR    +R++  A+Y +      S++VD+QLY+G
Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
           FF+D DR  M  +L T P  L  L++ F+D+R+  L F YRARNFP TL E E+Q WLEH
Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWLEH 429

Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           R+++ T + ++ Y ++LQ L  +Y  D+ K   + AL++Y Q ++
Sbjct: 430 RRQVFTPAFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474


>gi|110642225|ref|YP_669955.1| exonuclease I [Escherichia coli 536]
 gi|161486193|ref|NP_754426.2| exonuclease I [Escherichia coli CFT073]
 gi|191170056|ref|ZP_03031610.1| exodeoxyribonuclease I [Escherichia coli F11]
 gi|227887062|ref|ZP_04004867.1| exodeoxyribonuclease I [Escherichia coli 83972]
 gi|110343817|gb|ABG70054.1| exodeoxyribonuclease I [Escherichia coli 536]
 gi|190909572|gb|EDV69157.1| exodeoxyribonuclease I [Escherichia coli F11]
 gi|227835412|gb|EEJ45878.1| exodeoxyribonuclease I [Escherichia coli 83972]
 gi|294493683|gb|ADE92439.1| exodeoxyribonuclease I [Escherichia coli IHE3034]
 gi|307554081|gb|ADN46856.1| C-terminal part of exodeoxyribonuclease I [Escherichia coli ABU
           83972]
          Length = 475

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 332/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
           ++VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|309702335|emb|CBJ01657.1| exodeoxyribonuclease I [Escherichia coli ETEC H10407]
          Length = 475

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 329/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++  +P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTHQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L  RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRGRLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEDIV 475


>gi|191167705|ref|ZP_03029513.1| exodeoxyribonuclease I [Escherichia coli B7A]
 gi|209919475|ref|YP_002293559.1| exonuclease I [Escherichia coli SE11]
 gi|190902218|gb|EDV61959.1| exodeoxyribonuclease I [Escherichia coli B7A]
 gi|209912734|dbj|BAG77808.1| exonuclease I [Escherichia coli SE11]
 gi|320198703|gb|EFW73303.1| Exodeoxyribonuclease I [Escherichia coli EC4100B]
          Length = 475

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|323183799|gb|EFZ69190.1| exodeoxyribonuclease I [Escherichia coli 1357]
 gi|332092391|gb|EGI97464.1| exodeoxyribonuclease I [Shigella boydii 5216-82]
          Length = 475

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LFEYL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     +P+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|323972839|gb|EGB68038.1| exonuclease [Escherichia coli TA007]
          Length = 474

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 240/468 (51%), Positives = 329/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|324016993|gb|EGB86212.1| exonuclease [Escherichia coli MS 117-3]
          Length = 499

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 25  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 84

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 85  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 144

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 204

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 205 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 264

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 265 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 324

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 325 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 384

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 385 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 444

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 445 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499


>gi|300926502|ref|ZP_07142295.1| exonuclease [Escherichia coli MS 182-1]
 gi|300417463|gb|EFK00774.1| exonuclease [Escherichia coli MS 182-1]
          Length = 499

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 25  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 85  PGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNF 144

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 204

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LFEYL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 205 HDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 264

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 265 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 324

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL NL +LR+   +R++  AI+ +    + S
Sbjct: 325 VHINKCPVLAQANTLRPEDADRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPS 384

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 385 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 444

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 445 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499


>gi|197284734|ref|YP_002150606.1| exonuclease I [Proteus mirabilis HI4320]
 gi|194682221|emb|CAR41929.1| exodeoxyribonuclease I [Proteus mirabilis HI4320]
          Length = 476

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 247/470 (52%), Positives = 324/470 (68%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  F I+DYETFG   A+DRPAQFAGVR D  +  IE   V +CKP DDYLP PEAV IT
Sbjct: 7   TPTFYIHDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL+ GV EAEF+R+IHQ FS PN+CI+GYNN+RFDD  +RNI YRNFYD Y +S
Sbjct: 67  GITPQIALKHGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDV+RA YA  P+GI WP  DDG  SF+L+ L  ANGI H NAHDA +DV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGISHENAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+   +++ +P++F+Y ++ R+K +++ LIDI  MTPLVHVSGMFGA+RSN +L+A
Sbjct: 187 YATIAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPLVHVSGMFGAARSNLSLVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
           P+AWHP  +++VI C+L+ D+     L S QL +RL+T   EL     PVPIK +H+NKC
Sbjct: 247 PLAWHPDNRNAVIVCDLAADISPLLTLTSEQLRERLYTPRSELSADEPPVPIKLLHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PI+ P +  + +  +R G+D   CL N  +L     +R++   I+  +   + + DVD+Q
Sbjct: 307 PIVAPKNTLRSQDADRIGLDIDNCLNNQAILLSNPEIRNKVVEIFAQQTPFTPADDVDAQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  M+ I  T P+ L  LNL F D R+  LFFRYRARNFP TL+  E+Q 
Sbjct: 367 LYNGFFSDNDRSAMEIIRSTQPQNLPALNLTFEDPRMEPLFFRYRARNFPATLTYDEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WL HRK+ LT  ++ EY N +Q L+ E+  +E K   +  LY Y Q +  
Sbjct: 427 WLAHRKEQLTPEKLTEYINTIQLLAEEHSDNEEKLKQLQELYLYAQEIAS 476


>gi|330000618|ref|ZP_08303759.1| exodeoxyribonuclease I [Klebsiella sp. MS 92-3]
 gi|328537942|gb|EGF64123.1| exodeoxyribonuclease I [Klebsiella sp. MS 92-3]
          Length = 474

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 247/465 (53%), Positives = 328/465 (70%), Gaps = 1/465 (0%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+ +DYETFG   +LDRPAQFA +R D +   +   EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10  FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ+AL  G  EA F+RRIH  F+VP TCI+GYNN+RFDD  +RNIFYRNFYD Y WSW +
Sbjct: 70  PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            NSRWDLLDVMRA YA  P+GI WP  D+G  SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           +A+  L++ ++P+LF+YLY +RNK +L  LID+  M PLVHVSGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
           WHP  +++VI  +L+GDM    +LD+  L +RL+T   EL      PIK VHLNKCP+L 
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDQPAAPIKLVHLNKCPVLA 309

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
             +  + +  +R GI  +RCLEN  LLR    +R++  A+Y +      S++VD+QLY+G
Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
           FF+D DR  M  +L T P  L  L++ F+D+R+  L F YRARNFP TL E E+Q WLEH
Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQRWLEH 429

Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           R+++ T   ++ Y ++LQ L  +Y  D+ K   + AL++Y Q ++
Sbjct: 430 RRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474


>gi|218699399|ref|YP_002407028.1| exonuclease I [Escherichia coli IAI39]
 gi|306814865|ref|ZP_07449027.1| exonuclease I [Escherichia coli NC101]
 gi|218369385|emb|CAR17142.1| exonuclease I [Escherichia coli IAI39]
 gi|305852259|gb|EFM52711.1| exonuclease I [Escherichia coli NC101]
 gi|323187688|gb|EFZ72989.1| exodeoxyribonuclease I [Escherichia coli RN587/1]
 gi|324008954|gb|EGB78173.1| exonuclease [Escherichia coli MS 57-2]
          Length = 475

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|206578810|ref|YP_002237569.1| exodeoxyribonuclease I [Klebsiella pneumoniae 342]
 gi|206567868|gb|ACI09644.1| exodeoxyribonuclease I [Klebsiella pneumoniae 342]
          Length = 474

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 248/465 (53%), Positives = 328/465 (70%), Gaps = 1/465 (0%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+ +DYETFG   +LDRPAQFA +R D +   +   EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10  FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ+AL  G  EA F+RRIH  F+VP TCI+GYNN+RFDD  +RNIFYRNFYD Y WSW +
Sbjct: 70  PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            NSRWDLLDVMRA YA  P+GI WP  D+G  SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           +A+  L++ ++P+LF+YLY +RNK +L  LID+  M PLVHVSGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
           WHP  +++VI  +L+GDM    +LD+  L +RL+T   EL  L   PIK VHLNKCP+L 
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
             +  +    +R GI  +RCLEN  LLR    +R++  A+Y +      S++VD+QLY+G
Sbjct: 310 QANTLRPLDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
           FF+D DR  M  +L T P  L  L++ F+D+R+  L F YRARNFP TL E E+Q WLEH
Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWLEH 429

Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           R+++ T   ++ Y ++LQ L  +Y  D+ K   + AL++Y Q ++
Sbjct: 430 RRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474


>gi|300816639|ref|ZP_07096860.1| exonuclease [Escherichia coli MS 107-1]
 gi|300530869|gb|EFK51931.1| exonuclease [Escherichia coli MS 107-1]
          Length = 475

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 241/475 (50%), Positives = 329/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+    G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|320177928|gb|EFW52912.1| Exodeoxyribonuclease I [Shigella boydii ATCC 9905]
          Length = 475

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L + L+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLREHLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  ER GID + CL+NL +LR+   +RD+  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLE+R+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEYRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|253773058|ref|YP_003035889.1| exonuclease I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162000|ref|YP_003045108.1| exonuclease I [Escherichia coli B str. REL606]
 gi|300930717|ref|ZP_07146095.1| exonuclease [Escherichia coli MS 187-1]
 gi|242377657|emb|CAQ32417.1| exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase
           [Escherichia coli BL21(DE3)]
 gi|253324102|gb|ACT28704.1| Exodeoxyribonuclease I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973901|gb|ACT39572.1| exonuclease I [Escherichia coli B str. REL606]
 gi|253978095|gb|ACT43765.1| exonuclease I [Escherichia coli BL21(DE3)]
 gi|300461438|gb|EFK24931.1| exonuclease [Escherichia coli MS 187-1]
          Length = 475

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y Q ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 475


>gi|21959485|gb|AAM86164.1|AE013862_9 exonuclease I [Yersinia pestis KIM 10]
          Length = 497

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 256/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F ++DYETFG+  ALDRPAQFAGVR D  +  +E   V +CKPADDYLP PEAV IT
Sbjct: 28  QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 87

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 88  GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 147

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  DDG  SFKL+ L  ANG+EH+ AHDA +DV
Sbjct: 148 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 207

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L+++ +P+LF+YLY +R+K+++  LIDI  MTPLVHVSGMFGA+R NT+ +A
Sbjct: 208 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 267

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L+     +PIK VH+NKC
Sbjct: 268 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 327

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ +R GID +RCL+NL LLRQ   +R++  A++ +    + + DVD+Q
Sbjct: 328 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQ 387

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  +  I +T  + L  L+L F D RL  L FR+RARN+P+TL++ E+Q 
Sbjct: 388 LYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQR 447

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WL+HR++ L+  R+++Y  +L+    +Y+ D+ K  L+ AL+EY + ++ 
Sbjct: 448 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 497


>gi|327253143|gb|EGE64797.1| exodeoxyribonuclease I [Escherichia coli STEC_7v]
          Length = 475

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|45441270|ref|NP_992809.1| exonuclease I [Yersinia pestis biovar Microtus str. 91001]
 gi|108806850|ref|YP_650766.1| exonuclease I [Yersinia pestis Antiqua]
 gi|149366477|ref|ZP_01888511.1| exodeoxyribonuclease I [Yersinia pestis CA88-4125]
 gi|161484780|ref|NP_669913.2| exonuclease I [Yersinia pestis KIM 10]
 gi|165924676|ref|ZP_02220508.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939554|ref|ZP_02228099.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|167400240|ref|ZP_02305753.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421764|ref|ZP_02313517.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167470369|ref|ZP_02335073.1| exodeoxyribonuclease I [Yersinia pestis FV-1]
 gi|218928697|ref|YP_002346572.1| exonuclease I [Yersinia pestis CO92]
 gi|229841541|ref|ZP_04461700.1| exonuclease I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843652|ref|ZP_04463795.1| exonuclease I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229894245|ref|ZP_04509428.1| exonuclease I [Yersinia pestis Pestoides A]
 gi|45436130|gb|AAS61686.1| exodeoxyribonuclease I [Yersinia pestis biovar Microtus str. 91001]
 gi|108778763|gb|ABG12821.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Antiqua]
 gi|115347308|emb|CAL20203.1| exodeoxyribonuclease I [Yersinia pestis CO92]
 gi|149290851|gb|EDM40926.1| exodeoxyribonuclease I [Yersinia pestis CA88-4125]
 gi|165912470|gb|EDR31102.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923736|gb|EDR40868.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|166960249|gb|EDR56270.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050189|gb|EDR61597.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|229689260|gb|EEO81323.1| exonuclease I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229697907|gb|EEO87954.1| exonuclease I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229703643|gb|EEO90659.1| exonuclease I [Yersinia pestis Pestoides A]
 gi|320015573|gb|ADV99144.1| exonuclease I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 476

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 256/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F ++DYETFG+  ALDRPAQFAGVR D  +  +E   V +CKPADDYLP PEAV IT
Sbjct: 7   QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  DDG  SFKL+ L  ANG+EH+ AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L+++ +P+LF+YLY +R+K+++  LIDI  MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L+     +PIK VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ +R GID +RCL+NL LLRQ   +R++  A++ +    + + DVD+Q
Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  +  I +T  + L  L+L F D RL  L FR+RARN+P+TL++ E+Q 
Sbjct: 367 LYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WL+HR++ L+  R+++Y  +L+    +Y+ D+ K  L+ AL+EY + ++ 
Sbjct: 427 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 476


>gi|215487234|ref|YP_002329665.1| exonuclease I [Escherichia coli O127:H6 str. E2348/69]
 gi|312967244|ref|ZP_07781460.1| exodeoxyribonuclease I [Escherichia coli 2362-75]
 gi|215265306|emb|CAS09701.1| exonuclease I [Escherichia coli O127:H6 str. E2348/69]
 gi|312288052|gb|EFR15956.1| exodeoxyribonuclease I [Escherichia coli 2362-75]
          Length = 475

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 332/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
           ++VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|325497751|gb|EGC95610.1| exonuclease I [Escherichia fergusonii ECD227]
          Length = 475

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 246/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQATFLFHDYETFGTHPALDRPAQFAAIRTDSNFNIIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  ++G  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YLY +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  ER GID + CL+NL +LR+   +RD+  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           + E+Q WLEHR+++ T + ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y Q ++
Sbjct: 421 DNEQQRWLEHRRQVFTPAFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAQEIV 475


>gi|323940907|gb|EGB37095.1| exonuclease [Escherichia coli E482]
          Length = 474

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +LSGD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|332278835|ref|ZP_08391248.1| exonuclease I [Shigella sp. D9]
 gi|332101187|gb|EGJ04533.1| exonuclease I [Shigella sp. D9]
          Length = 491

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LFEYL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ + P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 257 GNTSWVVPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491


>gi|237704470|ref|ZP_04534951.1| exodeoxyribonuclease I [Escherichia sp. 3_2_53FAA]
 gi|300974061|ref|ZP_07172435.1| exonuclease [Escherichia coli MS 200-1]
 gi|300986935|ref|ZP_07177911.1| exonuclease [Escherichia coli MS 45-1]
 gi|26108790|gb|AAN80993.1|AE016762_246 Exodeoxyribonuclease I [Escherichia coli CFT073]
 gi|226900836|gb|EEH87095.1| exodeoxyribonuclease I [Escherichia sp. 3_2_53FAA]
 gi|300308958|gb|EFJ63478.1| exonuclease [Escherichia coli MS 200-1]
 gi|300407821|gb|EFJ91359.1| exonuclease [Escherichia coli MS 45-1]
 gi|315285605|gb|EFU45047.1| exonuclease [Escherichia coli MS 110-3]
 gi|315295233|gb|EFU54568.1| exonuclease [Escherichia coli MS 153-1]
 gi|324015752|gb|EGB84971.1| exonuclease [Escherichia coli MS 60-1]
          Length = 491

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 332/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
           ++VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491


>gi|330911851|gb|EGH40361.1| exodeoxyribonuclease 1 [Escherichia coli AA86]
          Length = 475

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|168751661|ref|ZP_02776683.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4113]
 gi|168757555|ref|ZP_02782562.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4401]
 gi|168769762|ref|ZP_02794769.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4486]
 gi|168775542|ref|ZP_02800549.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4196]
 gi|168782293|ref|ZP_02807300.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4076]
 gi|168788678|ref|ZP_02813685.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC869]
 gi|168799108|ref|ZP_02824115.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC508]
 gi|195939352|ref|ZP_03084734.1| exonuclease I [Escherichia coli O157:H7 str. EC4024]
 gi|208807658|ref|ZP_03249995.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4206]
 gi|208817101|ref|ZP_03258193.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4045]
 gi|208818353|ref|ZP_03258673.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4042]
 gi|209398513|ref|YP_002271254.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4115]
 gi|254793793|ref|YP_003078630.1| exonuclease I [Escherichia coli O157:H7 str. TW14359]
 gi|261225144|ref|ZP_05939425.1| exonuclease I [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257512|ref|ZP_05950045.1| exonuclease I [Escherichia coli O157:H7 str. FRIK966]
 gi|187768997|gb|EDU32841.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4196]
 gi|188014326|gb|EDU52448.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4113]
 gi|189000162|gb|EDU69148.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4076]
 gi|189355495|gb|EDU73914.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4401]
 gi|189361232|gb|EDU79651.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4486]
 gi|189371612|gb|EDU90028.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC869]
 gi|189378492|gb|EDU96908.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC508]
 gi|208727459|gb|EDZ77060.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4206]
 gi|208730720|gb|EDZ79410.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4045]
 gi|208738476|gb|EDZ86158.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4042]
 gi|209159913|gb|ACI37346.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4115]
 gi|254593193|gb|ACT72554.1| exonuclease I [Escherichia coli O157:H7 str. TW14359]
 gi|320191824|gb|EFW66472.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC1212]
          Length = 474

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 240/468 (51%), Positives = 328/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|256022296|ref|ZP_05436161.1| exonuclease I [Escherichia sp. 4_1_40B]
 gi|301329562|ref|ZP_07222343.1| exonuclease [Escherichia coli MS 78-1]
 gi|300844319|gb|EFK72079.1| exonuclease [Escherichia coli MS 78-1]
          Length = 474

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/468 (51%), Positives = 329/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y Q ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 474


>gi|315296392|gb|EFU55692.1| exonuclease [Escherichia coli MS 16-3]
          Length = 474

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 240/468 (51%), Positives = 328/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQIFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|218695636|ref|YP_002403303.1| exonuclease I [Escherichia coli 55989]
 gi|218352368|emb|CAU98142.1| exonuclease I [Escherichia coli 55989]
          Length = 475

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|331653435|ref|ZP_08354436.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli M718]
 gi|331048284|gb|EGI20360.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli M718]
          Length = 491

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 491


>gi|156974404|ref|YP_001445311.1| exonuclease I [Vibrio harveyi ATCC BAA-1116]
 gi|156525998|gb|ABU71084.1| hypothetical protein VIBHAR_02119 [Vibrio harveyi ATCC BAA-1116]
          Length = 473

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 228/469 (48%), Positives = 314/469 (66%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G   A DRP+QFAGVR D  +  I    V +C+P  DYLP P+A  IT
Sbjct: 6   QPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPDAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA+++G+ E EF  +IH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA +A  P+G++WP  D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y +  RNK +L +L+DI NMTPL+HVSGM G     T+ I 
Sbjct: 186 VATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           PVAWHP   ++VI  +L+ D +   +L + +L +RL+T  DEL  L+PVP+K VHLNKCP
Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P      E+ E  GID ++CL NL LLRQ   +R++  ++++ +     S DVD+QL
Sbjct: 306 ILAPAKTLTAENAEVIGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  DR  MD I  T P  L+ L++ F D+R+  L FRYRAR++  TL E+E++ W
Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQEQRRW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
            +H ++ +  S+IEEY   L++L  E++ DE K  ++ ++Y Y++ +  
Sbjct: 426 AQHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473


>gi|323961779|gb|EGB57380.1| exonuclease [Escherichia coli H489]
          Length = 474

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 241/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|323168854|gb|EFZ54534.1| exodeoxyribonuclease I [Shigella sonnei 53G]
          Length = 475

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  ++ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475


>gi|300898614|ref|ZP_07116941.1| exonuclease [Escherichia coli MS 198-1]
 gi|300357710|gb|EFJ73580.1| exonuclease [Escherichia coli MS 198-1]
          Length = 499

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 25  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 84

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 85  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 144

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 145 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 204

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 205 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 264

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 265 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 324

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 325 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 384

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 385 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 444

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 445 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 499


>gi|162419714|ref|YP_001607449.1| exonuclease I [Yersinia pestis Angola]
 gi|166009382|ref|ZP_02230280.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211647|ref|ZP_02237682.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167424322|ref|ZP_02316075.1| exodeoxyribonuclease I [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|270486761|ref|ZP_06203835.1| exonuclease C-terminal domain protein [Yersinia pestis KIM D27]
 gi|294503532|ref|YP_003567594.1| exodeoxyribonuclease I [Yersinia pestis Z176003]
 gi|162352529|gb|ABX86477.1| exodeoxyribonuclease I [Yersinia pestis Angola]
 gi|165991937|gb|EDR44238.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207418|gb|EDR51898.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167057171|gb|EDR66934.1| exodeoxyribonuclease I [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|262361575|gb|ACY58296.1| exodeoxyribonuclease I [Yersinia pestis D106004]
 gi|262365685|gb|ACY62242.1| exodeoxyribonuclease I [Yersinia pestis D182038]
 gi|270335265|gb|EFA46042.1| exonuclease C-terminal domain protein [Yersinia pestis KIM D27]
 gi|294353991|gb|ADE64332.1| exodeoxyribonuclease I [Yersinia pestis Z176003]
          Length = 487

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 256/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F ++DYETFG+  ALDRPAQFAGVR D  +  +E   V +CKPADDYLP PEAV IT
Sbjct: 18  QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 77

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 78  GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 137

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  DDG  SFKL+ L  ANG+EH+ AHDA +DV
Sbjct: 138 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 197

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L+++ +P+LF+YLY +R+K+++  LIDI  MTPLVHVSGMFGA+R NT+ +A
Sbjct: 198 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 257

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L+     +PIK VH+NKC
Sbjct: 258 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 317

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ +R GID +RCL+NL LLRQ   +R++  A++ +    + + DVD+Q
Sbjct: 318 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQ 377

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  +  I +T  + L  L+L F D RL  L FR+RARN+P+TL++ E+Q 
Sbjct: 378 LYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQR 437

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WL+HR++ L+  R+++Y  +L+    +Y+ D+ K  L+ AL+EY + ++ 
Sbjct: 438 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 487


>gi|222033783|emb|CAP76524.1| exodeoxyribonuclease I [Escherichia coli LF82]
 gi|281179112|dbj|BAI55442.1| exonuclease I [Escherichia coli SE15]
 gi|312946641|gb|ADR27468.1| exonuclease I [Escherichia coli O83:H1 str. NRG 857C]
 gi|320193300|gb|EFW67938.1| Exodeoxyribonuclease I [Escherichia coli WV_060327]
          Length = 475

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 332/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
           ++VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|331647660|ref|ZP_08348752.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli M605]
 gi|331043384|gb|EGI15522.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli M605]
          Length = 491

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491


>gi|296103672|ref|YP_003613818.1| exonuclease I [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058131|gb|ADF62869.1| exonuclease I [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 474

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 244/467 (52%), Positives = 334/467 (71%), Gaps = 1/467 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV +TG
Sbjct: 8   PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNIIGEPEVFYCKPADDYLPQPGAVMVTG 67

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ+A   GV EAEF+RRIH  F+VP+TC++GYNNIRFDD  +RNIFYRNFYD Y WSW
Sbjct: 68  ITPQEAREKGVNEAEFARRIHDLFTVPHTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSW 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N NSRWDLLD+MRA YA  P+GI WP  +DG  SF+L+ L  ANGIEH NAHDA ADVY
Sbjct: 128 QNRNSRWDLLDIMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADVY 187

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+A+  L++  +P+LFEYL  +R+K +L  LID+  M PLVH+SGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAP 247

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +AWHP  +++VI  +L+GD+    +LDS  L +RL+T  D L  L  VP+K VH+NKCP+
Sbjct: 248 LAWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKDALGDLPAVPVKLVHINKCPV 307

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
           L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +      S++VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFVPSENVDAQLY 367

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           +GFF+D DR  M+ +L+T P  L  L++ F+D+R+ +L F YRARN+P TL E E++ WL
Sbjct: 368 NGFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQECWL 427

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           +HR+ + T   +  Y  +L+ L G+Y+G+E K+ L+ AL+ Y+Q ++
Sbjct: 428 QHRRNVFTPEYLHGYAQELEMLYGQYEGNEEKQALLKALFRYVQEIV 474


>gi|168236215|ref|ZP_02661273.1| exodeoxyribonuclease I (Exonuclease I) [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194733944|ref|YP_002115153.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194709446|gb|ACF88667.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290623|gb|EDY29978.1| exodeoxyribonuclease I (Exonuclease I) [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 476

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 249/468 (53%), Positives = 335/468 (71%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QNTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L   V VP+K VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QL
Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++LT   +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476


>gi|323956180|gb|EGB51931.1| exonuclease [Escherichia coli H263]
          Length = 474

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 241/468 (51%), Positives = 331/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S++VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|324119041|gb|EGC12930.1| exonuclease [Escherichia coli E1167]
          Length = 474

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 241/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|193062859|ref|ZP_03043952.1| exodeoxyribonuclease I [Escherichia coli E22]
 gi|194428755|ref|ZP_03061291.1| exodeoxyribonuclease I [Escherichia coli B171]
 gi|260844621|ref|YP_003222399.1| exonuclease I [Escherichia coli O103:H2 str. 12009]
 gi|192931502|gb|EDV84103.1| exodeoxyribonuclease I [Escherichia coli E22]
 gi|194413202|gb|EDX29488.1| exodeoxyribonuclease I [Escherichia coli B171]
 gi|257759768|dbj|BAI31265.1| exonuclease I [Escherichia coli O103:H2 str. 12009]
 gi|323161928|gb|EFZ47802.1| exodeoxyribonuclease I [Escherichia coli E128010]
          Length = 475

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  ++ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475


>gi|330829787|ref|YP_004392739.1| exodeoxyribonuclease I [Aeromonas veronii B565]
 gi|328804923|gb|AEB50122.1| Exodeoxyribonuclease I [Aeromonas veronii B565]
          Length = 471

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 212/466 (45%), Positives = 308/466 (66%), Gaps = 2/466 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F  +DYETFG   A DRP+QFAG+R D  +  I    V +CKP  DYLPDPEA  ITG
Sbjct: 7   PTFYFHDYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLITG 66

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQKA++DG+ EA+F R+IH+ F+ PNTC++GYN+IRFDD  +R   YRNFYD Y +SW
Sbjct: 67  ITPQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYSW 126

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWD+LD++RA YA  P+GI+W   D+G  SF+L+ L + NG+ H NAHDA +DV 
Sbjct: 127 QNGNSRWDILDMLRACYALRPEGIEWAFDDEGKPSFRLEKLTVGNGVAHANAHDALSDVL 186

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  L+++ +PKLF YL+D RNKN+++ LID+  M PLVHVSGMF   +   + ++P
Sbjct: 187 ATIEMAKLVKKAQPKLFGYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCASWVSP 246

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +AWHP  +++VI  +L+ D     +L S ++ +RL+T  +EL  L  +P+K VH+NKCP+
Sbjct: 247 LAWHPTNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHINKCPV 306

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
           L P      E  +  GI+ ++C ++L LLR    +R++   ++N+ +  S+  D D+QLY
Sbjct: 307 LAPAATLTAERADELGINREQCRKSLDLLRAHPEVREKLVEVFNQEFAGSNESDPDTQLY 366

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
            GFF   D+  MD +  T  + L      F+D RLPE+ FRYRARN+PHTLSE E++ W 
Sbjct: 367 AGFFGHGDKSTMDLVRATPADLLGEREFAFTDSRLPEMLFRYRARNWPHTLSEAEQKRWR 426

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            H        R+ +Y  +L++L+ + + +E    ++ +LY YL+ +
Sbjct: 427 LHCSDYF-SRRLPDYVPRLEALAEQNQSNERNFAILKSLYHYLEDL 471


>gi|323948385|gb|EGB44370.1| exonuclease [Escherichia coli H120]
          Length = 474

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 241/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDALRERLYTAKADLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|238895590|ref|YP_002920325.1| exonuclease I [Klebsiella pneumoniae NTUH-K2044]
 gi|238547907|dbj|BAH64258.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 474

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 248/465 (53%), Positives = 330/465 (70%), Gaps = 1/465 (0%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+ +DYETFG   +LDRPAQFA +R D +   +   EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10  FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ+AL  G  EA F+RRIH  F+VP TCI+GYNN+RFDD  +RNIFYRNFYD Y WSW +
Sbjct: 70  PQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            NSRWDLLDVMRA YA  P+GI WP  D+G  SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           +A+  L++ ++P+LF+YLY +RNK +L  LID+  M PLVHVSGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
           WHP  +++VI  +L+GDM    +LD+  L +RL+T   EL  L   PIK VHLNKCP+L 
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
             +  + +  +R GI  +RCLEN  LLR    +R++  A+Y +      S++VD+QLY+G
Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
           FF+D DR  M  +L T P  L  L++ F+D+R+  L F YRARNFP TL E E+Q WLEH
Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQRWLEH 429

Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           R+++ T + ++ Y ++LQ L  +Y  D+ K   + AL++Y Q ++
Sbjct: 430 RRQVFTPAFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474


>gi|300936684|ref|ZP_07151588.1| exonuclease [Escherichia coli MS 21-1]
 gi|300458265|gb|EFK21758.1| exonuclease [Escherichia coli MS 21-1]
          Length = 474

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/468 (51%), Positives = 329/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTARADLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y Q ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 474


>gi|261821314|ref|YP_003259420.1| exonuclease I [Pectobacterium wasabiae WPP163]
 gi|261605327|gb|ACX87813.1| Exodeoxyribonuclease I [Pectobacterium wasabiae WPP163]
          Length = 475

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 258/469 (55%), Positives = 330/469 (70%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  A DRPAQFAGVR D  +  I    V +C+P DDYLP+PEAV IT
Sbjct: 6   QPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPEAVMIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  GV EAEF+R+IH+ FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 66  GITPQIALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLD +RA YA  P+GI WP  DDG  SF+L+ L  ANGI H  AHDA +DV
Sbjct: 126 WQHGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L ++ +PKLFEYL+  RNKN+L  LIDI  M PLVHVSGMFGA+RSNT+ I 
Sbjct: 186 YATIAMAKLFKQAQPKLFEYLFPLRNKNKLSALIDIPQMKPLVHVSGMFGAARSNTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI C+L+GDM    +LDS  L +RL+T  D L      VP+K VH+NKC
Sbjct: 246 PLAWHPDNRNAVIMCDLAGDMTPLLELDSQALRERLYTRRDALTADQSAVPLKLVHINKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQ 359
           P+L P +  + E  ER GID +RCL+NL LLR  +++R++   ++ +    ++S DVD +
Sbjct: 306 PVLAPANTLRPEDAERLGIDRQRCLDNLALLRSNSDVREKVVELFAEAPAFAASDDVDLR 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF D DR  M  I  TAP+ L  L+L F+D RL  LFFRYRARNFP TL ++E+Q 
Sbjct: 366 LYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           WL+HR+ + T  R++ Y ++L  L   ++ D+ K   + ALY Y Q ++
Sbjct: 426 WLQHRRAVFTPERLQNYLSELSELYQRHEDDKEKMTQLKALYAYAQELV 474


>gi|187733588|ref|YP_001879865.1| exonuclease I [Shigella boydii CDC 3083-94]
 gi|187430580|gb|ACD09854.1| exodeoxyribonuclease I [Shigella boydii CDC 3083-94]
 gi|332343794|gb|AEE57128.1| exodeoxyribonuclease [Escherichia coli UMNK88]
          Length = 475

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475


>gi|323936909|gb|EGB33192.1| exonuclease [Escherichia coli E1520]
          Length = 474

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFAHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|322613666|gb|EFY10606.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620237|gb|EFY17106.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623283|gb|EFY20124.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630488|gb|EFY27257.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632835|gb|EFY29580.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638832|gb|EFY35526.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640283|gb|EFY36945.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647148|gb|EFY43647.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648974|gb|EFY45417.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322653880|gb|EFY50204.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660987|gb|EFY57216.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663072|gb|EFY59279.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668517|gb|EFY64672.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673348|gb|EFY69451.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322679134|gb|EFY75188.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683229|gb|EFY79244.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685901|gb|EFY81891.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195188|gb|EFZ80369.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198756|gb|EFZ83856.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202400|gb|EFZ87443.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209215|gb|EFZ94151.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213844|gb|EFZ98621.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216128|gb|EGA00858.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223218|gb|EGA07560.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323223733|gb|EGA08040.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231339|gb|EGA15453.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323232569|gb|EGA16666.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240988|gb|EGA25028.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245593|gb|EGA29588.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247623|gb|EGA31572.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251066|gb|EGA34940.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257464|gb|EGA41155.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263357|gb|EGA46891.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266324|gb|EGA49813.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271468|gb|EGA54890.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 476

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 248/468 (52%), Positives = 335/468 (71%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L  L  VP+K VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDLAAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QL
Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++LT   +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476


>gi|323968146|gb|EGB63555.1| exonuclease [Escherichia coli M863]
          Length = 474

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 241/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|74312553|ref|YP_310972.1| exonuclease I [Shigella sonnei Ss046]
 gi|73856030|gb|AAZ88737.1| deoxyribophosphodiesterase [Shigella sonnei Ss046]
          Length = 475

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  ++ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475


>gi|152971008|ref|YP_001336117.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150955857|gb|ABR77887.1| 3' --> 5' specific exonuclease I [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 474

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 248/465 (53%), Positives = 330/465 (70%), Gaps = 1/465 (0%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+ +DYETFG   +LDRPAQFA +R D +   +   EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10  FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ+AL  G  EA F+RRIH  F+VP TCI+GYNN+RFDD  +RNIFYRNFYD Y WSW +
Sbjct: 70  PQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            NSRWDLLDVMRA YA  P+GI WP  D+G  SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           +A+  L++ ++P+LF+YLY +RNK +L  LID+  M PLVHVSGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
           WHP  +++VI  +L+GDM    +LD+  L +RL+T   EL  L   PIK VHLNKCP+L 
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
             +  + +  +R GI  +RCLEN  LLR    +R++  A+Y +      S++VD+QLY+G
Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNG 369

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
           FF+D DR  M  +L T P  L  L++ F+D+R+  L F YRARNFP TL E E+Q WLEH
Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQRWLEH 429

Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           R+++ T + ++ Y ++LQ L  +Y  D+ K   + AL++Y Q ++
Sbjct: 430 RRQVFTPAFLQAYADELQILYQQYADDKEKLAQLKALWQYAQDIV 474


>gi|108812583|ref|YP_648350.1| exonuclease I [Yersinia pestis Nepal516]
 gi|229902976|ref|ZP_04518092.1| exonuclease I [Yersinia pestis Nepal516]
 gi|108776231|gb|ABG18750.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Nepal516]
 gi|229679886|gb|EEO75986.1| exonuclease I [Yersinia pestis Nepal516]
          Length = 476

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 256/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F ++DYETFG+  ALDRPAQFAGVR D  +  +E   V +CKPADDYLP PEAV IT
Sbjct: 7   QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  DDG  SFKL+ L  ANG+EH+ AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L+++ +P+LF+YLY +R+K+++  LIDI  MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L+     +PIK VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ +R GID +RCL+NL LLRQ   +R++  A++ +    + + DVD+Q
Sbjct: 307 PVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  +  I +T  + L  L+L F D RL  L FR+RARN+P+TL++ E+Q 
Sbjct: 367 LYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WL+HR++ L+  R+++Y  +L+    +Y+ D+ K  L+ AL+EY + ++ 
Sbjct: 427 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLTLLKALFEYAKGLVS 476


>gi|162138417|ref|YP_541284.2| exonuclease I [Escherichia coli UTI89]
 gi|307626441|gb|ADN70745.1| exonuclease I [Escherichia coli UM146]
          Length = 475

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVS MFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
           ++VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|16129952|ref|NP_416515.1| exonuclease I [Escherichia coli str. K-12 substr. MG1655]
 gi|89108831|ref|AP_002611.1| exonuclease I [Escherichia coli str. K-12 substr. W3110]
 gi|170081641|ref|YP_001730961.1| exonuclease I [Escherichia coli str. K-12 substr. DH10B]
 gi|238901201|ref|YP_002926997.1| exonuclease I [Escherichia coli BW2952]
 gi|462029|sp|P04995|EX1_ECOLI RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
           Full=DNA deoxyribophosphodiesterase; Short=dRPase
 gi|405954|gb|AAA16417.1| exonuclease I [Escherichia coli]
 gi|1736685|dbj|BAA15839.1| exonuclease I [Escherichia coli str. K12 substr. W3110]
 gi|1788321|gb|AAC75072.1| exonuclease I [Escherichia coli str. K-12 substr. MG1655]
 gi|89330228|emb|CAJ84171.1| exodeoxyribonuclease I [Escherichia coli str. K-12 substr. MG1655]
 gi|169889476|gb|ACB03183.1| exonuclease I [Escherichia coli str. K-12 substr. DH10B]
 gi|238861050|gb|ACR63048.1| exonuclease I [Escherichia coli BW2952]
 gi|260448888|gb|ACX39310.1| Exodeoxyribonuclease I [Escherichia coli DH1]
 gi|315136644|dbj|BAJ43803.1| exonuclease I [Escherichia coli DH1]
 gi|315618014|gb|EFU98606.1| exodeoxyribonuclease I [Escherichia coli 3431]
          Length = 475

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475


>gi|260868731|ref|YP_003235133.1| exonuclease I [Escherichia coli O111:H- str. 11128]
 gi|257765087|dbj|BAI36582.1| exonuclease I [Escherichia coli O111:H- str. 11128]
 gi|323177088|gb|EFZ62678.1| exodeoxyribonuclease I [Escherichia coli 1180]
          Length = 474

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 240/468 (51%), Positives = 328/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|157155858|ref|YP_001463362.1| exonuclease I [Escherichia coli E24377A]
 gi|157077888|gb|ABV17596.1| exodeoxyribonuclease I [Escherichia coli E24377A]
          Length = 475

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  ++ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475


>gi|309797270|ref|ZP_07691665.1| exonuclease [Escherichia coli MS 145-7]
 gi|308119145|gb|EFO56407.1| exonuclease [Escherichia coli MS 145-7]
          Length = 475

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     +P+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|145598704|ref|YP_001162780.1| exonuclease I [Yersinia pestis Pestoides F]
 gi|145210400|gb|ABP39807.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Pestoides F]
          Length = 476

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 256/470 (54%), Positives = 342/470 (72%), Gaps = 2/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F ++DYETFG+  ALDRPAQFAGVR D  +  +E   V +CKPADDYLP PEAV IT
Sbjct: 7   QPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA YA  P+GI WP  DDG  SFKL+ L  ANG+EH+ AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L+++ +P+LF+YLY +R+K+++  LIDI  MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 YATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300
           P+AWHP  K++VI C+L+GDM    +LDS  L +RL+T  D+L+     +PIK VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           P+L P      E+ +R GID +RCL+NL LLRQ   +R++  A++ +    + + DVD+Q
Sbjct: 307 PVLAPAKTLLPENSDRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQ 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+D DR  +  I +T  + L  L+L F D RL  L FR+RARN+P+TL++ E+Q 
Sbjct: 367 LYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           WL+HR++ L+  R+++Y  +L+    +Y+ D+ K  L+ AL+EY + ++ 
Sbjct: 427 WLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS 476


>gi|271500784|ref|YP_003333809.1| exodeoxyribonuclease I [Dickeya dadantii Ech586]
 gi|270344339|gb|ACZ77104.1| Exodeoxyribonuclease I [Dickeya dadantii Ech586]
          Length = 476

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 258/468 (55%), Positives = 332/468 (70%), Gaps = 2/468 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F I+DYETFG+  A DRPAQFAGVR D  +  I    V +C+PADDYLPDPEAV ITG
Sbjct: 8   PTFFIHDYETFGKHPAKDRPAQFAGVRTDLNFTVIGEPVVIYCQPADDYLPDPEAVMITG 67

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A + GV EAEF+  IH+ FSVP TCI+GYNNIRFDD  SRN+FYRNF+D Y +SW
Sbjct: 68  ITPQVAQKRGVREAEFANHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFFDPYAYSW 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             GNSRWDLLD++RA YA  PDGI WP  DDG  SFKL+ L  ANG+EH  AHDA +DVY
Sbjct: 128 QQGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFKLEHLTRANGVEHTQAHDAMSDVY 187

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+A+  L+++ +PKLF+YLY  RNKN++  LIDI  M PLVHVSGMFGA+R NT+ I P
Sbjct: 188 ATIAMARLLKQAQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVP 247

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           +AWHP  +++VI C+L+GD++    LD+ +L  RL+T  + L +   PVPIK VH+NKCP
Sbjct: 248 LAWHPDNRNAVIVCDLAGDIQPLLALDADELRTRLYTRRELLAEDESPVPIKLVHINKCP 307

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L P    + E  ER GID + CL NL LLRQ +++R++  A++   P   +++DVD QL
Sbjct: 308 VLAPASTLRPEDAERLGIDRQHCLNNLQLLRQNSSVREKVVALFADAPPFEAAKDVDLQL 367

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  I +T  + L  LNL F+DRR+ EL FRYRARNFP TL E+E+Q W
Sbjct: 368 YDGFFSDADRAAMAIIRKTDAQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQRW 427

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           L HR+++ T  R++ Y + L  L  ++ GDE K   + AL+ Y Q ++
Sbjct: 428 LAHRREVFTAERLQNYFDTLDQLYQQHDGDEKKTTQLKALFAYAQQLL 475


>gi|331673547|ref|ZP_08374310.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA280]
 gi|331068820|gb|EGI40212.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA280]
          Length = 491

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491


>gi|28898075|ref|NP_797680.1| exonuclease I [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836551|ref|ZP_01989218.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ3810]
 gi|260366376|ref|ZP_05778815.1| exodeoxyribonuclease I [Vibrio parahaemolyticus K5030]
 gi|260878424|ref|ZP_05890779.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AN-5034]
 gi|260897003|ref|ZP_05905499.1| exodeoxyribonuclease I [Vibrio parahaemolyticus Peru-466]
 gi|28806289|dbj|BAC59564.1| exodeoxyribonuclease I [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750149|gb|EDM60894.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ3810]
 gi|308087707|gb|EFO37402.1| exodeoxyribonuclease I [Vibrio parahaemolyticus Peru-466]
 gi|308091094|gb|EFO40789.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AN-5034]
 gi|308113162|gb|EFO50702.1| exodeoxyribonuclease I [Vibrio parahaemolyticus K5030]
          Length = 473

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 225/469 (47%), Positives = 312/469 (66%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+   DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA+++G+ E EF  +IH   S P T  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDV+RA +A  P+G++WP  +DG TSFKL+ L++ NGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y +  R+K +L +L+DI NMTPL+HVSGM G     T+ I 
Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           PVAWHP   ++VI  +L+ D +   +L + +L +RL+T  ++L  L+PVP+K VHLNKCP
Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P      E+ E  GID ++CL+NL LLRQ   +R++   +++ +     S DVD+QL
Sbjct: 306 ILAPAKTLTAENAENIGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  DR  MD I  T P  L+ L++ F D+R+  L FRYRARNFP TL E+E++ W
Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
             H ++ +  S+IEEY   L++L  E++ DE K  ++ ++Y Y++ +  
Sbjct: 426 ALHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473


>gi|153833726|ref|ZP_01986393.1| exodeoxyribonuclease I [Vibrio harveyi HY01]
 gi|148870005|gb|EDL68965.1| exodeoxyribonuclease I [Vibrio harveyi HY01]
          Length = 473

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 229/469 (48%), Positives = 314/469 (66%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G   A DRP+QFAGVR D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA+++G+ E EF  +IH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA +A  P+G++WP  D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y +  RNK +L +L+DI NMTPL+HVSGM G     T+ I 
Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           PVAWHP   ++VI  +L+ D +   +L + +L +RL+T  DEL  L+PVP+K VHLNKCP
Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGELLPVPVKLVHLNKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P      E+ E  GID ++CL NL LLRQ   +R++  ++++ +     S DVD+QL
Sbjct: 306 ILAPAKTLTAENAEVIGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  DR  MD I  T P  L+ L++ F D+R+  L FRYRAR++  TL E+E++ W
Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQEQRRW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
            +H ++ +  S+IEEY   L++L  E++ DE K  ++ ++Y Y++ +  
Sbjct: 426 AQHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473


>gi|89330230|emb|CAJ84172.1| exodeoxyribonuclease I [Escherichia coli K-12]
          Length = 475

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 329/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HD  ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDVMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475


>gi|301648514|ref|ZP_07248238.1| exonuclease [Escherichia coli MS 146-1]
 gi|301073417|gb|EFK88223.1| exonuclease [Escherichia coli MS 146-1]
          Length = 491

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+AL  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 197 HDAMADVYATIALAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T   +L     VP+K 
Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTVKADLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491


>gi|301050038|ref|ZP_07196952.1| exonuclease [Escherichia coli MS 185-1]
 gi|300298222|gb|EFJ54607.1| exonuclease [Escherichia coli MS 185-1]
          Length = 491

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 332/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
           ++VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491


>gi|218705553|ref|YP_002413072.1| exonuclease I [Escherichia coli UMN026]
 gi|293405493|ref|ZP_06649485.1| sbcB [Escherichia coli FVEC1412]
 gi|298381181|ref|ZP_06990780.1| exodeoxyribonuclease I [Escherichia coli FVEC1302]
 gi|218432650|emb|CAR13545.1| exonuclease I [Escherichia coli UMN026]
 gi|291427701|gb|EFF00728.1| sbcB [Escherichia coli FVEC1412]
 gi|298278623|gb|EFI20137.1| exodeoxyribonuclease I [Escherichia coli FVEC1302]
          Length = 475

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+++  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV 475


>gi|324114057|gb|EGC08030.1| exonuclease [Escherichia fergusonii B253]
          Length = 474

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 244/468 (52%), Positives = 329/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDSNFNIIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  ++G  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  ER GID + CL+NL +LR+   +RD+  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDNEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T + ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y Q ++
Sbjct: 427 LEHRRQVFTPAFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAQEIV 474


>gi|307312423|ref|ZP_07592057.1| Exodeoxyribonuclease I [Escherichia coli W]
 gi|306907594|gb|EFN38097.1| Exodeoxyribonuclease I [Escherichia coli W]
 gi|315061286|gb|ADT75613.1| exonuclease I [Escherichia coli W]
 gi|323378134|gb|ADX50402.1| Exodeoxyribonuclease I [Escherichia coli KO11]
          Length = 475

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 332/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+ +  +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|117624215|ref|YP_853128.1| exonuclease I [Escherichia coli APEC O1]
 gi|115513339|gb|ABJ01414.1| exonuclease I [Escherichia coli APEC O1]
          Length = 491

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAKEIV 491


>gi|331683697|ref|ZP_08384293.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli H299]
 gi|331078649|gb|EGI49851.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli H299]
          Length = 474

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/468 (51%), Positives = 329/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LFEYL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|323172599|gb|EFZ58233.1| exodeoxyribonuclease I [Escherichia coli LT-68]
          Length = 475

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 329/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +      S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFMPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475


>gi|331658092|ref|ZP_08359054.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA206]
 gi|331056340|gb|EGI28349.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA206]
          Length = 474

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 241/468 (51%), Positives = 331/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S++VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|323977819|gb|EGB72905.1| exonuclease [Escherichia coli TW10509]
          Length = 474

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/468 (51%), Positives = 331/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP PEAV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPEAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|218549424|ref|YP_002383215.1| exonuclease I [Escherichia fergusonii ATCC 35469]
 gi|218356965|emb|CAQ89597.1| exonuclease I [Escherichia fergusonii ATCC 35469]
          Length = 474

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 244/468 (52%), Positives = 329/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDSDFNIIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  ++G  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  ER GID + CL+NL +LR+   +RD+  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDNEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T + ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y Q ++
Sbjct: 427 LEHRRQVFTPAFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAQEIV 474


>gi|312973748|ref|ZP_07787920.1| exodeoxyribonuclease I [Escherichia coli 1827-70]
 gi|310332343|gb|EFP99578.1| exodeoxyribonuclease I [Escherichia coli 1827-70]
          Length = 475

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 329/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGM GA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|91072872|gb|ABE07753.1| exodeoxyribonuclease I [Escherichia coli UTI89]
          Length = 491

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVS MFGA R
Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
           ++VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491


>gi|283785833|ref|YP_003365698.1| exodeoxyribonuclease I [Citrobacter rodentium ICC168]
 gi|282949287|emb|CBG88898.1| exodeoxyribonuclease I [Citrobacter rodentium ICC168]
          Length = 474

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 240/468 (51%), Positives = 327/468 (69%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D  +  +   EVF+CKPADDYLP P AV +T
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAALRTDGDFNVVGEPEVFYCKPADDYLPQPGAVLVT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNI YRNFYD Y WS
Sbjct: 67  GITPQEAREKGENEAAFAARIHALFTVPKTCIVGYNNVRFDDEVTRNILYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAQLVKSRQPRLFDYLYTHRNKDKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     +P+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISSLLELDSDTLRERLYTAKADLGDNAAIPLKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR    +RD+  AI+ +      S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVRDKAVAIFAEAEPFIPSDNVDTQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P+ L  L++ F D+R+ +L F YRARNFP TL E E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPQNLPALDITFVDKRIEKLLFNYRARNFPGTLDEAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L  EY  ++ K+ L+ +L++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQSYADELQRLYQEYGDNKEKQALLKSLWQYAEEIV 474


>gi|323951765|gb|EGB47639.1| exonuclease [Escherichia coli H252]
          Length = 474

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 241/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAKEIV 474


>gi|157267360|ref|NP_288516.2| exonuclease I [Escherichia coli O157:H7 str. EDL933]
 gi|169822936|gb|AAG57070.2|AE005426_12 exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase
           [Escherichia coli O157:H7 str. EDL933]
          Length = 475

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYAXDKEKVALLKALWQYAEXJV 475


>gi|91223947|ref|ZP_01259211.1| exodeoxyribonuclease I [Vibrio alginolyticus 12G01]
 gi|91191439|gb|EAS77704.1| exodeoxyribonuclease I [Vibrio alginolyticus 12G01]
          Length = 473

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 225/469 (47%), Positives = 311/469 (66%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAG R D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTNPAKDRPSQFAGARTDENFNIIGEPLVMYCQPPADYLPSPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQK +++G+ E EF  +IH   + PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKTVQEGLSEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDV+RA +A  P+G++WP  +DG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y +  R K +L  L+DI NMTPL+HVSGM G     T+ I 
Sbjct: 186 VATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           PVAWHP   ++VI  +L+ D +   +L + +L +RL+T  ++L  L+PVP+K VHLNKCP
Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P      E+ E  GID ++CL NL LLRQ   +R++  ++++ +     S DVD+QL
Sbjct: 306 ILAPAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  DR  MD I  T P  L+ L++ F D+R+  L FRYRARNFP TL E+E++ W
Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
             H ++ +  S+IEEY   L++L  E++ DE K  ++ ++Y Y++ +  
Sbjct: 426 ALHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473


>gi|323130390|gb|ADX17820.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 476

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 248/468 (52%), Positives = 334/468 (71%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VPIK VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPIKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QL
Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++LT   +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476


>gi|218690073|ref|YP_002398285.1| exonuclease I [Escherichia coli ED1a]
 gi|218427637|emb|CAR08548.2| exonuclease I [Escherichia coli ED1a]
          Length = 475

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 241/475 (50%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  ++++I  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  ++ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475


>gi|62180647|ref|YP_217064.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|167551009|ref|ZP_02344764.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168259635|ref|ZP_02681608.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168818244|ref|ZP_02830244.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194443671|ref|YP_002041334.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|197247769|ref|YP_002147025.1| exonuclease I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|198243454|ref|YP_002216153.1| exonuclease I [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|224583437|ref|YP_002637235.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238913451|ref|ZP_04657288.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|62128280|gb|AAX65983.1| exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194402334|gb|ACF62556.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197211472|gb|ACH48869.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197937970|gb|ACH75303.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205323967|gb|EDZ11806.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205344805|gb|EDZ31569.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205351000|gb|EDZ37631.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|224467964|gb|ACN45794.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322715118|gb|EFZ06689.1| Exonuclease, RNase T and DNA polymerase III [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|326623899|gb|EGE30244.1| LPS-assembly lipoprotein RlpB [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 476

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 248/468 (52%), Positives = 335/468 (71%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L   V VP+K VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QL
Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++LT   +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476


>gi|260901800|ref|ZP_05910195.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ4037]
 gi|308108118|gb|EFO45658.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ4037]
          Length = 473

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 225/469 (47%), Positives = 312/469 (66%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+   DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA+++G+ E EF  +IH   S P T  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDV+RA +A  P+G++WP  +DG TSFKL+ L++ NGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y +  R+K +L +L+DI NMTPL+HVSGM G     T+ I 
Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           PVAWHP   ++VI  +L+ D +   +L + +L +RL+T  ++L  L+PVP+K VHLNKCP
Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P      E+ E  GID ++CL+NL LLRQ   +R++   +++ +     S DVD+QL
Sbjct: 306 ILAPAKTLTAENAENIGIDRQKCLDNLALLRQYPEIREKLIGLFSIERQFEKSDDVDTQL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  DR  MD I  T P  L+ L++ F D+R+  L FRYRARNFP TL E+E++ W
Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
             H ++ +  S+IEEY   L++L  E++ DE K  ++ ++Y Y++ +  
Sbjct: 426 ALHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473


>gi|168229383|ref|ZP_02654441.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168466281|ref|ZP_02700151.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194472204|ref|ZP_03078188.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205353209|ref|YP_002227010.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857502|ref|YP_002244153.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|194458568|gb|EDX47407.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195631242|gb|EDX49802.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|205272990|emb|CAR37938.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205335677|gb|EDZ22441.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|206709305|emb|CAR33645.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326628296|gb|EGE34639.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 476

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 247/468 (52%), Positives = 334/468 (71%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QL
Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++LT   +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476


>gi|204929131|ref|ZP_03220274.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321675|gb|EDZ06874.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 476

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 248/468 (52%), Positives = 335/468 (71%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L   V VP+K VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QL
Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAETEPFAASDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++LT   +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476


>gi|149912138|ref|ZP_01900724.1| putative exonuclease I [Moritella sp. PE36]
 gi|149804786|gb|EDM64828.1| putative exonuclease I [Moritella sp. PE36]
          Length = 480

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 237/468 (50%), Positives = 311/468 (66%), Gaps = 2/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYETFG   +LDRP+QFAG+R D  +  I   ++F+C+ +DDYLP PEA  IT
Sbjct: 12  QPTFYWHDYETFGLSPSLDRPSQFAGIRTDMDFNVIGEPDMFYCRQSDDYLPSPEATLIT 71

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQK   +GV EAEFS+RI   FS  NTCIIGYNNIRFDD  +RNIFYRNFYD Y  +
Sbjct: 72  GITPQKTQAEGVNEAEFSKRIEAQFSHKNTCIIGYNNIRFDDEVTRNIFYRNFYDPYAHT 131

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWD++D+MRA YA  P+GI WP  DDG  S +L+ L  ANGIEH NAHDA +DV
Sbjct: 132 WKDGNSRWDIIDLMRACYALRPEGIVWPENDDGLPSMRLELLTKANGIEHANAHDATSDV 191

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++EK+PKLF++L++ R+K ++  LIDI NMTPLVHVSGMFGA R  T+ + 
Sbjct: 192 YATIAMAKLVKEKQPKLFDFLFNLRSKRKVESLIDIINMTPLVHVSGMFGADRGFTSWVV 251

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP   ++VI  +L+ D+    +L + +L +RL+T   +L  L P+P+K +H+NKCP
Sbjct: 252 PLAWHPTNNNAVIVADLAQDITPLLELSADELRERLYTPKKDLGDLAPIPLKLIHINKCP 311

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           +L P      E+ ER GID   CL NL  L++   LR+    +Y        S +VD+ +
Sbjct: 312 VLAPAKTLLPENAERLGIDRNACLANLKRLKESATLRENVVGVYQVDREYPKSNNVDAMI 371

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  D+   + +  TAPEQL  L L  SD R  ELFFRYRARNFPH LS  E+Q W
Sbjct: 372 YDGFFSAGDKANFEILRETAPEQLVGLQLKISDERFNELFFRYRARNFPHLLSMPEQQKW 431

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           L H + +L       Y ++L +L+ E   DE K  L+  LY Y Q +I
Sbjct: 432 LNHCRSVL-EDSAPAYFDRLDALAIENSHDERKMKLLQQLYLYGQTII 478


>gi|218554573|ref|YP_002387486.1| exonuclease I [Escherichia coli IAI1]
 gi|218361341|emb|CAQ98929.1| exonuclease I [Escherichia coli IAI1]
          Length = 475

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 240/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKP DDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPVDDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  ++++I  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  ++ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475


>gi|16765397|ref|NP_461012.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167990978|ref|ZP_02572077.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168242135|ref|ZP_02667067.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194450582|ref|YP_002046116.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|16420598|gb|AAL20971.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194408886|gb|ACF69105.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205330564|gb|EDZ17328.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205338443|gb|EDZ25207.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|261247282|emb|CBG25107.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994119|gb|ACY89004.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158628|emb|CBW18140.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913058|dbj|BAJ37032.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224713|gb|EFX49776.1| Exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|332989002|gb|AEF07985.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 476

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 247/468 (52%), Positives = 334/468 (71%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QL
Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++LT   +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476


>gi|282600282|ref|ZP_05973706.2| exodeoxyribonuclease I [Providencia rustigianii DSM 4541]
 gi|282565948|gb|EFB71483.1| exodeoxyribonuclease I [Providencia rustigianii DSM 4541]
          Length = 479

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 250/469 (53%), Positives = 321/469 (68%), Gaps = 1/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  I+  EVF+CKP DDYLP PEAV IT
Sbjct: 11  QPTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCKPTDDYLPQPEAVMIT 70

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A  +GV EAEF++RIHQ FS PNTCI+GYNNIRFDD  +RNIFYRNFYD Y +S
Sbjct: 71  GITPQIAQANGVNEAEFAKRIHQSFSTPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYS 130

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLD +RA +A  P+GI WP  DDG  S +L+ L  ANG+ H NAHDA +DV
Sbjct: 131 WQQGNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVAHENAHDAMSDV 190

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +  L+++ +P++F+Y Y  RNKN++ +LIDI  MTPLVHVSGMFGA RS  +L+A
Sbjct: 191 LATINMAKLLKQAQPRMFDYFYQLRNKNKVSQLIDIVEMTPLVHVSGMFGALRSYVSLVA 250

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  K++VI C+LS DM     L++ +L +RL+T   EL   +PVPIK VH+NKCP
Sbjct: 251 PLAWHPDNKNAVIMCDLSADMSPLLTLNADELRERLYTPKAELGDALPVPIKLVHINKCP 310

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P    +    ER GID   CL NL +LR+  ++R++   I++       S DVD Q+
Sbjct: 311 ILAPEKTLRTVDAERTGIDRDLCLRNLEILRKNPDVRNKLIEIFSVDQQFEESNDVDRQI 370

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y GFF+  DR  MD I  TAP+ L  L+L F D+R+ ELFFRY+ARN+P TLS  E+Q W
Sbjct: 371 YSGFFSPSDRSTMDIIRETAPQNLPGLDLSFEDKRMKELFFRYKARNYPATLSYDEQQRW 430

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L+HR+   T +R+ EY  ++Q L   +  DE +   + AL  Y   +  
Sbjct: 431 LQHRRDYFTEARLTEYMQQIQLLMDIHHEDEKRCQQLKALVSYAADLAS 479


>gi|331668711|ref|ZP_08369559.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA271]
 gi|331063905|gb|EGI35816.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA271]
          Length = 474

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 241/468 (51%), Positives = 331/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+ +  +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474


>gi|16760997|ref|NP_456614.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29141307|ref|NP_804649.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56413034|ref|YP_150109.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361958|ref|YP_002141595.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|213053400|ref|ZP_03346278.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213421859|ref|ZP_03354925.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213425574|ref|ZP_03358324.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213648908|ref|ZP_03378961.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|289829232|ref|ZP_06546844.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25289114|pir||AF0763 exodeoxyribonuclease I (EC 3.1.11.1) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503295|emb|CAD02428.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136934|gb|AAO68498.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56127291|gb|AAV76797.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093435|emb|CAR58890.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 476

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 247/468 (52%), Positives = 334/468 (71%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QL
Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++LT   +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476


>gi|311278993|ref|YP_003941224.1| Exodeoxyribonuclease I [Enterobacter cloacae SCF1]
 gi|308748188|gb|ADO47940.1| Exodeoxyribonuclease I [Enterobacter cloacae SCF1]
          Length = 474

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 252/474 (53%), Positives = 330/474 (69%), Gaps = 6/474 (1%)

Query: 1   MTNH-----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           M        F+ +DYETFG   +LDRPAQFA +R D  +  I   EVF+CKPADDYLP P
Sbjct: 1   MQETQSPPGFLFHDYETFGTSPSLDRPAQFAALRTDGDFNVIGEPEVFYCKPADDYLPQP 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           +AV ITGITPQ+AL  G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFY
Sbjct: 61  QAVLITGITPQEALAKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFY 120

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
           D Y WSW N NSRWDLLDVMRA YA  P+GI WP  +DG  SF+L+ L  ANGIEH NAH
Sbjct: 121 DPYAWSWQNHNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAH 180

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
           DA ADVYAT+A+  L++ ++P+LF+YLY YRNKN+L  LID+  M PLVHVSGMFGA R 
Sbjct: 181 DAMADVYATIAMAQLVKSRQPRLFDYLYTYRNKNKLATLIDVPQMKPLVHVSGMFGAWRG 240

Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           NT+ IAP+AWHP  +++VI  +L+GDM    +L + +L  RL+T+   L  L  VP+K V
Sbjct: 241 NTSWIAPLAWHPDNRNAVIVVDLAGDMSPLLELTADELRDRLYTAKASLGDLAAVPVKLV 300

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQ 354
           HLNKCP+L   +  + E  +R GI+ ++CL+NL LLR    +RD+  AI+        SQ
Sbjct: 301 HLNKCPVLAQANTLRPEDADRLGINRQQCLDNLKLLRDNPQVRDKVVAIFADAAPFVPSQ 360

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
           +VD+QLY+GFF+D DR  M  +L T P  L  L+L F+D R+ +L F YRARNFP TL +
Sbjct: 361 NVDAQLYNGFFSDADRAAMKILLETEPRNLPALDLTFADTRIEKLLFNYRARNFPGTLDD 420

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            E+Q WL+HR+++ T   ++ Y ++LQ LS +Y  D+ K  L+  L++Y Q ++
Sbjct: 421 AEQQRWLQHRREVFTPEFLQAYADELQLLSQQYAEDKAKLALLKTLWQYAQDIV 474


>gi|329298840|ref|ZP_08256176.1| exonuclease I [Plautia stali symbiont]
          Length = 473

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 251/467 (53%), Positives = 329/467 (70%), Gaps = 1/467 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+ +DYETFG+  +LDRPAQFAG+R D+ +  +   +VF+C+ ADDYLP PEAV ITGI
Sbjct: 7   TFLFHDYETFGKSPSLDRPAQFAGLRTDKAFNAVGEPQVFYCQLADDYLPQPEAVMITGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A   GV E EF++RIH  FS P TC+IGYNN+RFDD  +RNIFYRNF D Y WSW 
Sbjct: 67  TPQVANARGVQEVEFAQRIHALFSEPQTCVIGYNNVRFDDEVTRNIFYRNFIDPYGWSWQ 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLDVMRA YA  P+GI WP  DDG  SFKL+ L  ANG+ H  AHDA +DVYA
Sbjct: 127 NGNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTQANGVAHEQAHDAMSDVYA 186

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           TLA+  L++EK+PKLFE+L+ +RNK +L  LIDI  M PLVHVSGMFGA+R NT+ I P+
Sbjct: 187 TLAMAKLVQEKQPKLFEFLFTHRNKQKLMTLIDIPQMKPLVHVSGMFGAARGNTSWIVPL 246

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           AWHP  K+++I  +L+GDM     L   +L +RL+T H +L  L  VPIK VH+NKCP+L
Sbjct: 247 AWHPDNKNALIVADLAGDMTPLLTLSPDELRERLYTRHSDLGDLPAVPIKLVHINKCPVL 306

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362
            P +  + E  ER GID + CL NL LLRQ   +R+    ++ +    + S+DVD+QLYD
Sbjct: 307 APANTLRPEDAERLGIDRQHCLANLALLRQHAEVRENVVTLFAEAEPFTPSEDVDAQLYD 366

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
           GFF+D DR  M+ + +T P+ L  L+L F D+R+ +L FRYRARNFP TL +KE+Q WL+
Sbjct: 367 GFFSDADRAGMNILRQTPPQNLPALDLTFEDKRIAKLLFRYRARNFPGTLDDKEQQRWLQ 426

Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           H ++ L   R++ +  +L+SL+  ++GD  K   + ALY Y Q ++ 
Sbjct: 427 HCREQLNAERVKAFLLELESLASLHEGDAEKMAQLKALYLYAQELVS 473


>gi|183599505|ref|ZP_02960998.1| hypothetical protein PROSTU_02983 [Providencia stuartii ATCC 25827]
 gi|188021751|gb|EDU59791.1| hypothetical protein PROSTU_02983 [Providencia stuartii ATCC 25827]
          Length = 475

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 246/469 (52%), Positives = 316/469 (67%), Gaps = 1/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  I+  EVF+C P DDYLP PEAV IT
Sbjct: 7   QPTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCAPTDDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  GV EAEF++RIHQ FS PNTCI+GYNNIRFDD  +RNIFYRNFYD Y +S
Sbjct: 67  GITPQLALAQGVNEAEFAKRIHQQFSQPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLD +RA +A  P+GI WP  D+G  S +L+ L  ANGI H NAHDA +DV
Sbjct: 127 WQQGNSRWDLLDTVRACFALRPEGIIWPENDEGLPSMRLEHLTKANGIAHENAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +  L++  +P++F Y Y  RNKN++ +LIDI +MTPLVHVSGMFGA RS  +L+A
Sbjct: 187 LATINMAKLLKAAQPRMFNYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYISLVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI C+L+ D+    +L    L +RL+T   EL G +PVPIK VH+NKCP
Sbjct: 247 PLAWHPDNRNAVIMCDLAADISPLVNLPVETLRERLYTPKTELDGELPVPIKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           IL P    + E  ER G+D   CL NL +LR+  ++R +   I+ +        DVD+Q+
Sbjct: 307 ILAPEKTLRIEDAERTGVDRDLCLRNLEILRKHPDIRHKVIEIFAQAQPFEEPNDVDAQI 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y GFF+  DR  MD I  T  + L  L+L F D R+ ELFFRY+ARN+P TLS  E+Q W
Sbjct: 367 YSGFFSSSDRSTMDIIRETPEKNLPALDLTFEDPRMKELFFRYKARNYPSTLSYDEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L+HR+   T SR+ EY   ++SL  E++ D  +   + AL  Y   +  
Sbjct: 427 LQHRRDYFTESRLMEYMQSIESLMIEHQNDVERCKQLKALVNYAAELAS 475


>gi|328472968|gb|EGF43816.1| exonuclease I [Vibrio parahaemolyticus 10329]
          Length = 473

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 225/469 (47%), Positives = 311/469 (66%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+   DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA+++G+ E EF  +I    S P T  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKAMQEGLSEPEFIAKIQAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDV+RA +A  P+GI+WP  +DG TSFKL+ L++ NGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVLRACHALRPEGIEWPENEDGFTSFKLEHLSVKNGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y +  R+K +L +L+DI NMTPL+HVSGM G     T+ I 
Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           PVAWHP   ++VI  +L+ D +   +L + +L +RL+T  ++L  L+PVP+K VHLNKCP
Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P      E+ E  GID ++CL+NL LLRQ   +R++   +++ +     S DVD+QL
Sbjct: 306 ILAPAKTLTAENAENIGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  DR  MD I  T P  L+ L++ F D+R+  L FRYRARNFP TL E+E++ W
Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
             H ++ +  S+IEEY   L++L  E++ DE K  ++ ++Y Y++ +  
Sbjct: 426 ALHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473


>gi|283832563|ref|ZP_06352304.1| exodeoxyribonuclease I [Citrobacter youngae ATCC 29220]
 gi|291072232|gb|EFE10341.1| exodeoxyribonuclease I [Citrobacter youngae ATCC 29220]
          Length = 474

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 247/465 (53%), Positives = 329/465 (70%), Gaps = 1/465 (0%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP PEAV ITGIT
Sbjct: 10  FLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNI YRNFYD Y WSW N
Sbjct: 70  PQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQN 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAHDAMADVYAT 189

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           +A+  L++ ++P+LF+YLY +RNK++L  LID+  M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
           WHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP+L 
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDALRERLYTAKADLGDNPAVPVKLVHINKCPVLA 309

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
             +  + E  +R GI+ + CL+NL LLR+   +RD+  AI+      + S +VD+QLY+G
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLNLLRENPQVRDKVVAIFADAEPFAPSDNVDTQLYNG 369

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
           FF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL E E+Q WL+H
Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAEQQRWLDH 429

Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           R+++ T   ++ Y N+LQ+LS +Y  ++ K  L+ +L++Y Q ++
Sbjct: 430 RRQVFTPEFLQNYANELQTLSQQYADNKEKLMLLKSLWQYAQEIV 474


>gi|293446370|ref|ZP_06662792.1| exodeoxyribonuclease I [Escherichia coli B088]
 gi|291323200|gb|EFE62628.1| exodeoxyribonuclease I [Escherichia coli B088]
          Length = 475

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 331/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQCWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|269966310|ref|ZP_06180397.1| exodeoxyribonuclease I [Vibrio alginolyticus 40B]
 gi|269829049|gb|EEZ83296.1| exodeoxyribonuclease I [Vibrio alginolyticus 40B]
          Length = 473

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 225/469 (47%), Positives = 311/469 (66%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DR +QFAGVR D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTNPAKDRSSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQK +++G+ E EF  +IH   + PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDV+RA +A  P+G++WP  +DG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y +  R K +L  L+DI NMTPL+HVSGM G     T+ I 
Sbjct: 186 VATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           PVAWHP   ++VI  +L+ D +   +L + +L +RL+T  ++L  L+PVP+K VHLNKCP
Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P      E+ E  GID ++CL NL LLRQ   +R++  ++++ +     S DVD+QL
Sbjct: 306 ILAPAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  DR  MD I  T P  L+ L++ F D+R+  L FRYRARNFP TL E+E++ W
Sbjct: 366 YDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
             H ++ +  S+IEEY   L++L  E++ DE K  ++ ++Y Y++ +  
Sbjct: 426 ALHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS 473


>gi|157145042|ref|YP_001452361.1| exonuclease I [Citrobacter koseri ATCC BAA-895]
 gi|157082247|gb|ABV11925.1| hypothetical protein CKO_00773 [Citrobacter koseri ATCC BAA-895]
          Length = 474

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/467 (52%), Positives = 328/467 (70%), Gaps = 1/467 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV ITG
Sbjct: 8   PTFLFHDYETFGTHPALDRPAQFASIRTDSDFNIIGEPEVFYCKPADDYLPQPGAVLITG 67

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ+A   G  EA+F+RRIH  F+VP TC++GYNN+RFDD  +RNI YRNFYD Y WSW
Sbjct: 68  ITPQEARDKGENEADFARRIHSLFTVPKTCVVGYNNVRFDDEVTRNILYRNFYDPYAWSW 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAHDAMADVY 187

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+A+  L++ ++P+LF+YLY +RNK++L  LID+  M PLVH+SGMFGA R NT+ +AP
Sbjct: 188 ATIAMAQLVKSRQPRLFDYLYTHRNKHKLAALIDVPQMKPLVHISGMFGAWRGNTSWVAP 247

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +AWHP  +++VI  +L+GDM    +LDS  L +RL+T+  +L     VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDMSPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
           L   +  + E  +R GI+ + CL+NL +LR    +RD+  AI+ +    + S++VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVRDKVVAIFAEAEPFTPSENVDAQLY 367

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           +GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL E E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDETEQQRWL 427

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           EHR+++ T   ++ Y  +LQ L  +Y  D+ K  L+ +L++Y + ++
Sbjct: 428 EHRRQVFTPEFLQRYAEELQMLYQQYADDKEKLALLKSLWQYAEEIV 474


>gi|200388584|ref|ZP_03215196.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199605682|gb|EDZ04227.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 476

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 248/468 (52%), Positives = 335/468 (71%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L   V VP+K VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QL
Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDTEQQRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++LT   +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476


>gi|50121489|ref|YP_050656.1| exonuclease I [Pectobacterium atrosepticum SCRI1043]
 gi|49612015|emb|CAG75464.1| exodeoxyribonuclease I [Pectobacterium atrosepticum SCRI1043]
          Length = 475

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 257/469 (54%), Positives = 327/469 (69%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  A DRPAQFAGVR D  +  I    V +C+P DDYLP+PEAV IT
Sbjct: 6   QPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPEAVMIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  GV EAEF+R+IH  FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 66  GITPQIALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N NSRWDLLD +RA YA  P+GI WP  DDG  SF+L+ L  ANGI H  AHDA +DV
Sbjct: 126 WQNSNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L ++ +PKLFEYL+  RNKN++  LIDI  M PLVHVSGMFGA+RSNT+ I 
Sbjct: 186 YATIAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI C+L+GDM    +LDS  L +RL+T  D L      VP+K VH+NKC
Sbjct: 246 PLAWHPDNRNAVIMCDLAGDMTPLLELDSDALRERLYTRRDALTADQSAVPLKLVHINKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQ 359
           P+L P +  + E   R GID +RCL+NL LLR   ++R++  A++ +    ++S DVD +
Sbjct: 306 PVLAPANTLRPEDAARLGIDRQRCLDNLALLRNNADIREKVVALFAEVPAFAASDDVDLR 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF D DR  M  I  TAP+ L  L+L F+D RL  LFFRYRARNFP TL ++E+Q 
Sbjct: 366 LYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           WL+HR+ + T  R++ Y ++L  L   ++ D+ K   + ALY Y Q ++
Sbjct: 426 WLQHRRAVFTPERLQSYLSELSDLYQLHEDDKEKMTQLKALYAYAQDLV 474


>gi|331663511|ref|ZP_08364421.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA143]
 gi|331059310|gb|EGI31287.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli TA143]
          Length = 474

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 239/468 (51%), Positives = 328/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+++  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L      P+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAFPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV 474


>gi|161613258|ref|YP_001587223.1| exonuclease I [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161362622|gb|ABX66390.1| hypothetical protein SPAB_00968 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 476

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 247/468 (52%), Positives = 335/468 (71%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L   V VP+K VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QL
Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++LT   +++Y N+LQ LS +Y  ++ K GL+ +L++Y   ++
Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAENKTKLGLLKSLWQYATEIV 476


>gi|309787899|ref|ZP_07682509.1| exodeoxyribonuclease I [Shigella dysenteriae 1617]
 gi|308924298|gb|EFP69795.1| exodeoxyribonuclease I [Shigella dysenteriae 1617]
          Length = 475

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA Y   P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYTLRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPETLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|284922012|emb|CBG35090.1| exodeoxyribonuclease I [Escherichia coli 042]
          Length = 491

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGKPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+++  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 197 HDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV 491


>gi|12084680|pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity
           Is Achieved
 gi|166007143|pdb|2QXF|A Chain A, Product Bound Structure Of Exonuclease I At 1.5 Angstrom
           Resolution
 gi|193885301|pdb|3C94|A Chain A, ExoiSSB-Ct Complex
 gi|193885304|pdb|3C95|A Chain A, Exonuclease I (Apo)
 gi|284055587|pdb|3HL8|A Chain A, Crystal Structure Of Exonuclease I In Complex With
           Inhibitor Bcbp
 gi|284055600|pdb|3HP9|A Chain A, Crystal Structure Of SsbEXONUCLEASE I IN COMPLEX WITH
           Inhibitor Cfam
          Length = 482

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 244/475 (51%), Positives = 329/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y   ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYADEIV 475


>gi|86146813|ref|ZP_01065133.1| exonuclease I [Vibrio sp. MED222]
 gi|218709702|ref|YP_002417323.1| exonuclease I [Vibrio splendidus LGP32]
 gi|85835463|gb|EAQ53601.1| exonuclease I [Vibrio sp. MED222]
 gi|218322721|emb|CAV18897.1| Exodeoxyribonuclease I [Vibrio splendidus LGP32]
          Length = 474

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 226/470 (48%), Positives = 307/470 (65%), Gaps = 3/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +  +DYET+G   A DRP+QFAGVR D+ +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITPQKA   G+ E EF  +IH   + PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  RITPQKAASQGLPEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA++A  P+GI WP  ++G  SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYPSFKLEHLSVANGIEHENAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PK+F+YLY+ R+K +L  L+DI NMTPL+HVSGMFG   + T+ I 
Sbjct: 186 IATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L+ D     +LD+ +L  RL+T   EL +  +PVPIK V LNKC
Sbjct: 246 PMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELSEDELPVPIKLVQLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ E  GID ++CL+NL LLR+   +R++   +Y  +     S DVD+ 
Sbjct: 306 PILAPAKTLTAENAETIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTH 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+  D+  M+ I  T P  L+ L++ FSD R+  L FRYRARNFP TL E E+  
Sbjct: 366 LYDGFFSPADKTAMNIIRETDPNNLAALDITFSDERIKPLLFRYRARNFPWTLDEAEQLK 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W  H ++     R+EEY   L++L+ E++ DE K  ++ A+Y+Y++ +  
Sbjct: 426 WANHCRE-FYECRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS 474


>gi|293415305|ref|ZP_06657948.1| exodeoxyribonuclease I [Escherichia coli B185]
 gi|291432953|gb|EFF05932.1| exodeoxyribonuclease I [Escherichia coli B185]
          Length = 475

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 329/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDR AQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRSAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y  ++Q L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|237732065|ref|ZP_04562546.1| exonuclease I [Citrobacter sp. 30_2]
 gi|226907604|gb|EEH93522.1| exonuclease I [Citrobacter sp. 30_2]
          Length = 474

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 246/465 (52%), Positives = 329/465 (70%), Gaps = 1/465 (0%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP PEAV ITGIT
Sbjct: 10  FLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNI YRNFYD Y WSW N
Sbjct: 70  PQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQN 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHTNAHDAMADVYAT 189

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           +A+  L++ ++P+LF+YLY +RNK++L  LID+  M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
           WHP  +++VI  +L+GD+    +LDS  L +RL+TS  +L     VP+K VH+NKCP+L 
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDALRERLYTSKADLGDNPAVPVKLVHINKCPVLA 309

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
             +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+      + S +VD+QLY+G
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKVLRENPQIRDKVVAIFADAEPFTPSDNVDAQLYNG 369

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
           FF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL E E+Q WL+H
Sbjct: 370 FFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAEQQRWLDH 429

Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           R+++ T   +++Y N+LQ LS +Y  ++ K  L+ +L++Y + ++
Sbjct: 430 RRQVFTPEFLQDYANELQLLSQQYADNKEKLMLLKSLWQYAEEIV 474


>gi|37679656|ref|NP_934265.1| exonuclease I [Vibrio vulnificus YJ016]
 gi|37198401|dbj|BAC94236.1| exonuclease I [Vibrio vulnificus YJ016]
          Length = 473

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 230/469 (49%), Positives = 311/469 (66%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G   A DRP+QFAGVR D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA ++G+ E EF  +IH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA +A  P+G++WP  ++G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y +  R+K +L +LIDI NMTPL+HVSGM G     T+ I 
Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP   ++VI  +L+ D +   DLD+  L +RL+T HDEL  L+PVP+K VHLNKCP
Sbjct: 246 PLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P      E+    GID ++CL NL L+RQ   +R++   +++ +     S DVD+ L
Sbjct: 306 ILAPAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  D+  MD I +T P  L+ L++ F+D+R+  L FRYRARN+P TL E E++ W
Sbjct: 366 YDGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDENEQRRW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
             H ++    SRIEEY   L++L  E++ DE K  ++ ++Y Y + +I 
Sbjct: 426 ANHCREYF-ESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS 473


>gi|323497417|ref|ZP_08102435.1| exonuclease I [Vibrio sinaloensis DSM 21326]
 gi|323317500|gb|EGA70493.1| exonuclease I [Vibrio sinaloensis DSM 21326]
          Length = 474

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 230/470 (48%), Positives = 307/470 (65%), Gaps = 3/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G   A DRP QFAGVR D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGDPLVIYCQPPSDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ E EF  +IH+  ++PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQTAQAQGLSEPEFIAKIHEQLAMPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA YA  P+G++WP  D+G  SFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRACYALRPEGVEWPENDEGFISFKLEHLSKANGIEHENAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   I+  +PKLF+Y    R+K +L  L+DI NMTPL+HVSGM G   + T+ + 
Sbjct: 186 IATIEMAKKIKAAQPKLFDYFLSMRHKRKLNDLVDIVNMTPLMHVSGMLGKECNYTSWMV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L+ D +   DLD  QL +RL+T H EL +  +PVP+K VHLNKC
Sbjct: 246 PLAWHPTNQNAVIMVDLAKDPQPLLDLDVEQLNQRLYTKHSELAEDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
           PIL P      E+ E  GID  +CL+NL LLRQ   +R++   +Y+ +   +   DVD+ 
Sbjct: 306 PILAPAKTLTAENAETIGIDRDQCLKNLALLRQHPEVREKLIGLYSIEREYAKDNDVDAM 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+  D+  MD I  T P  L+ L++ F+D R+  L FRYRARNFP +L E E+Q 
Sbjct: 366 LYDGFFSPADKASMDIIRETDPNNLAALDISFNDDRIAPLLFRYRARNFPWSLDESEQQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W  H ++    SRIEEY   L++L  E++ DE K  ++ ++Y+Y+Q ++ 
Sbjct: 426 WANHCREYF-ESRIEEYMLNLENLVHEHESDEKKLAILKSVYQYVQKLVS 474


>gi|227329384|ref|ZP_03833408.1| exonuclease I [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 475

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 254/469 (54%), Positives = 329/469 (70%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  A DRPAQFAGVR D  +  I    V +C+P+DDYLP+PEAV IT
Sbjct: 6   QPTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPSDDYLPEPEAVMIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  GV EAEF+R+IH+ FSVP TCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 66  GITPQVALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLD +RA YA  P+GI WP  DDG  SF+L+ L  ANGI H  AHDA +DV
Sbjct: 126 WQNGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L ++ +PKLF+YL+  RNKN++  LIDI  M PLVHVSGMFGA+RSNT+ + 
Sbjct: 186 YATIAMAKLFKQAQPKLFDYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
           P+AWHP  +++VI C+L+GDM    +LDS  L +RL+T  D L+     VP+K VH+NKC
Sbjct: 246 PLAWHPDNRNAVIMCDLAGDMTPLLELDSEALRERLYTRRDALEANQSAVPLKLVHINKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA-IYNKPYTSSSQDVDSQ 359
           P+L P +  + E  ER GID +RCL+NL +LR   ++R++      +    ++S DVD +
Sbjct: 306 PVLAPANTLRPEDAERLGIDRQRCLDNLAVLRNNASVREKVVELFADASAFAASDDVDLR 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF D DR  M  I  TAP+ L  L+L F+D RL  LFFRYRARNFP TL ++E+Q 
Sbjct: 366 LYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           WL+HR+ + T   ++ Y ++L +L   ++ D+ K   + ALY Y Q ++
Sbjct: 426 WLQHRRAVFTPEHLQSYLSELNNLYQLHEDDKEKMAQLKALYAYAQELV 474


>gi|323491335|ref|ZP_08096520.1| exonuclease I [Vibrio brasiliensis LMG 20546]
 gi|323314461|gb|EGA67540.1| exonuclease I [Vibrio brasiliensis LMG 20546]
          Length = 474

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 231/467 (49%), Positives = 308/467 (65%), Gaps = 3/467 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G   A DRP QFAGVR D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ E EF  +IH+  ++PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQTAESKGLSEPEFIAKIHEQLAMPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA YA  P+GI+WP  ++G  SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRACYALRPEGIEWPENEEGFISFKLESLSVANGIEHENAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y    R+K +L +L+DI NMTPL+HVSGM G   + T+ I 
Sbjct: 186 IATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGKECNYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVAWHP  +++VI  +L+ D +   DLD+ QL +RL+T H +L    +PVP+K V LNKC
Sbjct: 246 PVAWHPTNQNAVICVDLAKDPQALLDLDTEQLNQRLYTKHSDLGPDELPVPVKLVQLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
           PIL P      E+ E+ GID ++CLENL LLR+   +R++   +Y  +     SQDVDS 
Sbjct: 306 PILAPAKTLTAENAEKIGIDREKCLENLALLRKHPEIREKLIGVYAIEREYEKSQDVDSM 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+  D+  MD I  T P  L+ L++ F+D R+  L FRYRARNFP TL E E+Q 
Sbjct: 366 LYDGFFSPADKAAMDIIRETDPNNLAALDISFNDDRIAPLLFRYRARNFPWTLDESEQQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
           W  H +     SRIE+Y   L++L+ E++ D+ K  ++ ++Y+Y+Q 
Sbjct: 426 WALHCRDYF-ESRIEDYMLNLENLAHEHESDQKKMAILKSIYQYVQK 471


>gi|82543387|ref|YP_407334.1| exonuclease I [Shigella boydii Sb227]
 gi|81244798|gb|ABB65506.1| deoxyribophosphodiesterase [Shigella boydii Sb227]
 gi|320185776|gb|EFW60530.1| Exodeoxyribonuclease I [Shigella flexneri CDC 796-83]
 gi|332097090|gb|EGJ02073.1| exodeoxyribonuclease I [Shigella boydii 3594-74]
          Length = 474

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 240/468 (51%), Positives = 328/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMPPLVHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + + +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474


>gi|170769782|ref|ZP_02904235.1| exodeoxyribonuclease I [Escherichia albertii TW07627]
 gi|170121396|gb|EDS90327.1| exodeoxyribonuclease I [Escherichia albertii TW07627]
          Length = 475

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 334/475 (70%), Gaps = 7/475 (1%)

Query: 1   MTNH------FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N+      F+ +DYETFG   ALDRPAQFA +R D ++  I   E+F+CKPADDYLP 
Sbjct: 1   MMNNGKHQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEIFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VPNTCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFATRIHSLFTVPNTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  ++G  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENEEGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YLY +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAIAKLVKTRQPRLFDYLYTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
           ++VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 ENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQSYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|148975895|ref|ZP_01812684.1| exonuclease I [Vibrionales bacterium SWAT-3]
 gi|145964640|gb|EDK29893.1| exonuclease I [Vibrionales bacterium SWAT-3]
          Length = 474

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 227/470 (48%), Positives = 312/470 (66%), Gaps = 3/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +  +DYET+G   A DRP+QFAGVR D+ +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITPQKA+  G+ E EF  +IH   + PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  RITPQKAVSQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA++A  PDGI WP  ++G  SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFPSFKLEHLSVANGIEHENAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PK+F+YLY+ R+K +L +L+DI NMTPL+HVSGMFG   + T+ I 
Sbjct: 186 IATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L+ D     +LD+ +L +RL+T   +L +  +PVPIK V LNKC
Sbjct: 246 PMAWHPTNQNAVIVVDLAKDPSPLLELDADELRERLYTKRSDLNEDELPVPIKLVQLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ E  GID ++CL+NL +LR+   +R++   +Y  +     S DVD+Q
Sbjct: 306 PILAPAKTLTAENAETIGIDRQQCLKNLAILREHPEIREKLIGLYSQEREYEKSDDVDTQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+  D+  M+ I  T P  L+ L++ FSD R+  L FRYRARNFP TL E E+  
Sbjct: 366 LYDGFFSPADKTAMNIIRETDPNNLAVLDITFSDERIKPLLFRYRARNFPWTLDESEQLK 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W  H ++    SR+EEY   L++L+ E++ DE K  ++ A+Y+Y++ +  
Sbjct: 426 WANHCRE-FYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS 474


>gi|82777457|ref|YP_403806.1| exonuclease I [Shigella dysenteriae Sd197]
 gi|81241605|gb|ABB62315.1| exonuclease I [Shigella dysenteriae Sd197]
          Length = 475

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 243/475 (51%), Positives = 330/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA Y   P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYTLRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y + ++
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475


>gi|320156592|ref|YP_004188971.1| exodeoxyribonuclease I [Vibrio vulnificus MO6-24/O]
 gi|319931904|gb|ADV86768.1| exodeoxyribonuclease I [Vibrio vulnificus MO6-24/O]
          Length = 473

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 230/469 (49%), Positives = 311/469 (66%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G   A DRP+QFAGVR D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPSFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA ++G+ E EF  +IH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA +A  P+G++WP  ++G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y +  R+K +L +LIDI NMTPL+HVSGM G     T+ I 
Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP   ++VI  +L+ D +   DLD+  L +RL+T HDEL  L+PVP+K VHLNKCP
Sbjct: 246 PLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P      E+    GID ++CL NL L+RQ   +R++   +++ +     S DVD+ L
Sbjct: 306 ILAPAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  D+  MD I +T P  L+ L++ F+D+R+  L FRYRARN+P TL E E++ W
Sbjct: 366 YDGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDENEQRRW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
             H ++    SRIEEY   L++L  E++ DE K  ++ ++Y Y + +I 
Sbjct: 426 ANHCREYF-ESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS 473


>gi|27366077|ref|NP_761605.1| exonuclease I [Vibrio vulnificus CMCP6]
 gi|27362277|gb|AAO11132.1| Exodeoxyribonuclease I [Vibrio vulnificus CMCP6]
          Length = 473

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 229/469 (48%), Positives = 310/469 (66%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G   A DRP+QFA VR D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTSPAKDRPSQFASVRTDENFNIIGEPLVIYCRPPADYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA ++G+ E EF  +IH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA +A  P+G++WP  ++G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y +  R+K +L +LIDI NMTPL+HVSGM G     T+ I 
Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP   ++VI  +L+ D +   DLD+  L +RL+T HDEL  L+PVP+K VHLNKCP
Sbjct: 246 PLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P      E+    GID ++CL NL L+RQ   +R++   +++ +     S DVD+ L
Sbjct: 306 ILAPAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTML 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  D+  MD I +T P  L+ L++ F+D+R+  L FRYRARN+P TL E E++ W
Sbjct: 366 YDGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDENEQRRW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
             H ++    SRIEEY   L++L  E++ DE K  ++ ++Y Y + +I 
Sbjct: 426 ANHCREYF-ESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS 473


>gi|331677916|ref|ZP_08378591.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli H591]
 gi|331074376|gb|EGI45696.1| exodeoxyribonuclease I (Exonuclease I)
           (DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
           coli H591]
          Length = 491

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 241/475 (50%), Positives = 329/475 (69%), Gaps = 7/475 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 17  MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 77  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 136

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 137 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 196

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVH+SGMFGA R
Sbjct: 197 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWR 256

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+   L     VP+K 
Sbjct: 257 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTNLGDNAAVPVKL 316

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + +
Sbjct: 317 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPT 376

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 377 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 436

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 437 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 491


>gi|59712089|ref|YP_204865.1| exonuclease I [Vibrio fischeri ES114]
 gi|59480190|gb|AAW85977.1| exonuclease I [Vibrio fischeri ES114]
          Length = 474

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 222/469 (47%), Positives = 302/469 (64%), Gaps = 3/469 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F  +DYET+G   +LDRP QFAGVR D  +  I    V +C+P  DYLP PEA  ITG
Sbjct: 7   PSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPEACLITG 66

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A+  G+ E EF  +IH   S PNTC +GYNNIRFDD  SR   YRNF++ Y WSW
Sbjct: 67  ITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWSW 126

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWDLLDVMRA+YA  P+GI WP  ++G  SFKL++L++ANGIEH NAHDA ADV 
Sbjct: 127 QNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIEHANAHDAMADVI 186

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ L   +++ +PK+F YL   RNK +   LIDI  MTPL+HVSGMFG  R N + I P
Sbjct: 187 ATIELAKKVKQAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGNISWIVP 246

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           VAWHP   ++VI  +L+ D  VF +L+  +L +R++T   EL    +PVP+K VHLNKCP
Sbjct: 247 VAWHPTNNNAVITIDLALDPSVFLELNVEELHQRMYTKRSELGPDELPVPVKLVHLNKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           +L P      E+     +D + CL NL ++R+   +R +   +Y+ +P    S +VD+ L
Sbjct: 307 VLAPAKTLTAENAANLNVDREACLRNLKVIRENPEIRQKLIELYSIEPNYEKSTNVDTLL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  D+  +D I ++ PEQL       +D R+  L FRYRARNFPHTL+E E+  W
Sbjct: 367 YDGFFSHADKATIDIIRQSTPEQLIDFEPNVTDPRIKPLLFRYRARNFPHTLNEAEQLRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
             H +    ++ + +Y+   ++L  E +G++ K  ++ A+Y Y+Q +I 
Sbjct: 427 HAHLQDYF-QTHLPDYEASFENLYLESEGNDKKVAILKAVYNYVQQLIS 474


>gi|163801030|ref|ZP_02194930.1| exodeoxyribonuclease I [Vibrio sp. AND4]
 gi|159175379|gb|EDP60176.1| exodeoxyribonuclease I [Vibrio sp. AND4]
          Length = 473

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 224/469 (47%), Positives = 312/469 (66%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA+++G+ E EF  +IH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKAMQEGLSEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA +A  P+G++WP  D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y +  RNK +L +L+DI NMTPL+HVSGM G     T+ I 
Sbjct: 186 IATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           PVAWHP   ++VI  +L+ D +   +L + +L +RL+T  +EL  L+P+P+K +HLNKCP
Sbjct: 246 PVAWHPTNNNAVITIDLAKDPQPLLELSAEKLQERLYTKREELGDLLPIPVKLIHLNKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P      E+ E  GID ++CL NL LLRQ   +R++   +++ +     S DVD+QL
Sbjct: 306 ILAPAKTLTAENAEIIGIDRQKCLNNLALLRQHPEIREKLIGLFSIEREFQKSDDVDTQL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+  DR  MD I  T    L+ L++ F D+R+  L FRYRAR++  TL E+E++ W
Sbjct: 366 YEGFFSPADRAAMDIIRETDAHNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQEQRRW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
            +H ++ +   +IEEY   L++L  E++ DE K  L+ ++Y Y++ +  
Sbjct: 426 EQHCRE-VFEGQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS 473


>gi|197335521|ref|YP_002156294.1| exodeoxyribonuclease I [Vibrio fischeri MJ11]
 gi|197317011|gb|ACH66458.1| exodeoxyribonuclease I [Vibrio fischeri MJ11]
          Length = 474

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 222/469 (47%), Positives = 301/469 (64%), Gaps = 3/469 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F  +DYET+G   +LDRP QFAGVR D  +  I    V +C+P  DYLP PEA  ITG
Sbjct: 7   PSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPEACLITG 66

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A+  G+ E EF  +IH   S PNTC +GYNNIRFDD  SR   YRNF++ Y WSW
Sbjct: 67  ITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWSW 126

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWDLLDVMRA+YA  P+GI WP  ++G  SFKL++L++ANGIEH NAHDA ADV 
Sbjct: 127 QNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIEHANAHDAMADVI 186

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ L   ++E +PK+F YL   RNK +   LIDI  MTPL+HVSGMFG  R N + I P
Sbjct: 187 ATIELAKKVKEAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGNISWIVP 246

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           VAWHP   ++VI  +L+ D  VF  L+  +L +R++T   +L    +PVP+K VHLNKCP
Sbjct: 247 VAWHPTNNNAVITIDLALDPSVFLKLNVEELHQRMYTKRSDLGPDELPVPVKLVHLNKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           +L P      E+     +D + CL NL ++R+   +R +   +Y+ +P    S +VD+ L
Sbjct: 307 VLAPAKTLTAENAANLNVDREACLRNLKVIRENPEIRQKLIELYSIEPNYEKSTNVDTLL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  D+  +D I ++ PEQL       +D R+  L FRYRARNFPHTL+E E+  W
Sbjct: 367 YDGFFSHADKATIDIIRQSTPEQLIDFEPNVTDPRIKPLLFRYRARNFPHTLNEAEQLRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
             H +    ++ + +Y+   ++L  E +G++ K  ++ A+Y Y+Q +I 
Sbjct: 427 HAHLQDYF-QTHLPDYEASFENLYLESEGNDKKVAILKAVYNYVQQLIS 474


>gi|260778470|ref|ZP_05887362.1| exodeoxyribonuclease I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604634|gb|EEX30929.1| exodeoxyribonuclease I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 474

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 232/470 (49%), Positives = 309/470 (65%), Gaps = 3/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G   A DRP+QFAGVR D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  +IH+  S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKAASKGLPEPEFITKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA +A  P+GI WP  ++G  SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGINWPENEEGFISFKLEHLSVANGIEHENAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y    R+K +L +L+DI NMTPL+HVSGM G   + T+ + 
Sbjct: 186 IATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGRECNYTSWVV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVAWHP  +++VI  +L+ D +   DLD  QL +RL+T H EL    +PVPIK VHLNKC
Sbjct: 246 PVAWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
           PIL P      E+    GID ++CL+NL  LRQ   +R++  ++Y+ +     S DVD+ 
Sbjct: 306 PILAPAKTLTAENAANIGIDREKCLQNLERLRQHPEIREKLNSLYSIEREYEKSDDVDTM 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+   +Q MD I  T P+ LS L++ FSD R+  L FRYRAR+FP TL E E+Q 
Sbjct: 366 LYDGFFSPAAKQSMDIIRETEPKNLSALDISFSDDRIAPLLFRYRARHFPWTLDESEQQK 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W  H ++    SRIE+Y   L++L  E++ DE K  ++ ++Y+Y+Q ++ 
Sbjct: 426 WAAHSREYF-ESRIEDYMLNLENLVHEHESDEKKIAILKSVYQYVQKLVS 474


>gi|333002524|gb|EGK22085.1| exodeoxyribonuclease I [Shigella flexneri VA-6]
          Length = 474

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 238/468 (50%), Positives = 324/468 (69%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PL HVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LD   L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            EHR ++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 QEHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474


>gi|261252841|ref|ZP_05945414.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891]
 gi|260936232|gb|EEX92221.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891]
          Length = 474

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 229/467 (49%), Positives = 304/467 (65%), Gaps = 3/467 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G   A DRP QFAGVR D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPHPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ E EF  +IH+  + PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQTAETQGLSEPEFIAKIHEQLATPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA YA  P+GI+WP  D+G  SFKL+ L+  NGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRACYALRPEGIEWPVNDEGFISFKLEHLSKENGIEHENAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   ++  +PKLF+Y    R+K +L +L+DI NMTPL+HVSGM G   + T+ + 
Sbjct: 186 IATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGKECNYTSWVV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVAWHP  +++VI  +L+ D +   DLD  QL +RL+T H EL    +PVP+K +HLNKC
Sbjct: 246 PVAWHPTNQNAVICVDLAKDPQALLDLDVEQLNERLYTKHSELGPDELPVPVKLIHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
           PIL P      E+ E+ GID ++CL NL LLRQ   +R++   +Y+ +     S DVD+ 
Sbjct: 306 PILAPAKTLTAENAEKIGIDREQCLNNLALLRQHPEVREKLIGLYSAEREYEKSSDVDTM 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+  D+  MD I  T P  L+ L++ F+D+R+  L FRYRARNFP TL E E+Q 
Sbjct: 366 LYDGFFSPADKTAMDIIRETDPNNLTALDITFNDQRIDPLLFRYRARNFPWTLDESEQQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
           W  H +     SRIE+Y   L++L  E++ D+ K  ++ ++Y+Y+Q 
Sbjct: 426 WANHCRDYF-ESRIEDYMLNLENLVHEHESDQKKIAILKSIYQYVQK 471


>gi|254449147|ref|ZP_05062598.1| exodeoxyribonuclease I [gamma proteobacterium HTCC5015]
 gi|198261261|gb|EDY85555.1| exodeoxyribonuclease I [gamma proteobacterium HTCC5015]
          Length = 474

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 203/474 (42%), Positives = 297/474 (62%), Gaps = 6/474 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  F  YD ETFG D    R AQFAG R D     I    V +C+P+ D+LPDPEA  I
Sbjct: 1   MSQTFYWYDLETFGTDPKTTRIAQFAGQRTDADLNPIGDPLVIYCQPSPDFLPDPEACLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ A R+G+ E+EF +RIH+ FS PNTC++GYN++RFDD + R  FYRNF D Y  
Sbjct: 61  TGITPQVAAREGLPESEFIQRIHREFSQPNTCVLGYNSLRFDDEFMRYGFYRNFIDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NG SRWDL+DV+R   A  P+GI+WP  +DG  S KL+DL  ANG+ H  AHDA +D
Sbjct: 121 EWQNGCSRWDLIDVVRLTRALRPEGIEWPFHEDGTPSNKLEDLTQANGLVHSKAHDAYSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           + AT+A+   I+EK+PKL+++    R+K +L   + +    P+VH+SGM+G  R++TA++
Sbjct: 181 IEATIAVAKRIKEKQPKLWQFCLHNRDKRKLAGQLKVAAKEPVVHISGMYGNERASTAIV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
            PVA HP  K+ +I  +L+ D      LDS  +A+R+FT  ++L     +P+K VHLNKC
Sbjct: 241 VPVARHPSNKNGIIVYDLAHDPAELIALDSAAIAERVFTRREDLGDKERLPLKTVHLNKC 300

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P++ P+    +E  +R GID +  +  +  L+   +L  R +A + +       D D  L
Sbjct: 301 PVIAPLSTLSEEAAQRLGIDIEEQVARIETLKPIDDLEQRVQAAFGQQQFDPITDPDQSL 360

Query: 361 YDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y G F  D D+ +M +I   +PEQLS L+LPF D+RLPEL FR+RARN+P +L   E+Q 
Sbjct: 361 YGGGFIGDSDKALMRQIHSASPEQLSNLDLPFQDKRLPELLFRFRARNYPMSLDSDEQQR 420

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W E  ++ +         +++++NKL +L+ EY+ D+ K  ++  L +Y++ + 
Sbjct: 421 WAELCREHIHDGKSGYLNLDQFQNKLMALAQEYEHDDSKLHVLKQLADYVEHIA 474


>gi|24113393|ref|NP_707903.1| exonuclease I [Shigella flexneri 2a str. 301]
 gi|30063460|ref|NP_837631.1| exonuclease I [Shigella flexneri 2a str. 2457T]
 gi|24052413|gb|AAN43610.1| exonuclease I, 3 --> 5 specific; deoxyribophosphodiesterase
           [Shigella flexneri 2a str. 301]
 gi|30041713|gb|AAP17440.1| exonuclease I, 3 --> 5 specific; deoxyribophosphodiesterase
           [Shigella flexneri 2a str. 2457T]
 gi|281601461|gb|ADA74445.1| deoxyribophosphodiesterase [Shigella flexneri 2002017]
 gi|313649951|gb|EFS14371.1| exodeoxyribonuclease I [Shigella flexneri 2a str. 2457T]
 gi|332756645|gb|EGJ86994.1| exodeoxyribonuclease I [Shigella flexneri K-671]
 gi|332756922|gb|EGJ87267.1| exodeoxyribonuclease I [Shigella flexneri 2747-71]
 gi|332766358|gb|EGJ96567.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
           [Shigella flexneri 2930-71]
 gi|333002384|gb|EGK21946.1| exodeoxyribonuclease I [Shigella flexneri K-218]
 gi|333017067|gb|EGK36388.1| exodeoxyribonuclease I [Shigella flexneri K-304]
          Length = 474

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 239/468 (51%), Positives = 325/468 (69%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PL HVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LD   L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR ++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474


>gi|145299357|ref|YP_001142198.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852129|gb|ABO90450.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 475

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 213/466 (45%), Positives = 308/466 (66%), Gaps = 2/466 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F  +DYETFG   A DRP+QFAG+R D  +  I    V +CKP  DYLPDPEA  ITG
Sbjct: 11  PTFYFHDYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLITG 70

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQKA++DG+ EA+F R+IH+ F+ PNTC++GYN+IRFDD  +R   YRNFYD Y ++W
Sbjct: 71  ITPQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAW 130

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWD+LD++RA YA  P+GI+W   ++G  SF+L+ L +ANG+ H NAHDA +DV 
Sbjct: 131 QNGNSRWDILDMLRACYALRPEGIEWAFDEEGKPSFRLEKLTVANGVSHANAHDALSDVL 190

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  L+++ +PKLFEYL+  RNKN+++ LID+  M PLVHVSGMF   +   + I+P
Sbjct: 191 ATIEMAKLVKKAQPKLFEYLFTLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCVSWISP 250

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +AWHP  +++VI  +L+ D     +L S ++ +RL+T  DEL  L  +P+K VH+NKC +
Sbjct: 251 LAWHPTNQNAVIMVDLTRDPTPLIELSSEEIRERLYTRKDELGDLAAIPVKLVHINKCRV 310

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
           L P      E  +   ID ++C ++L LLR    +R++   ++N+ +  S+  D D+QLY
Sbjct: 311 LAPAATLTPERADELTIDREQCRKSLNLLRAHPEVREKLVEVFNQEFEGSNDPDPDTQLY 370

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
            GFF   D+  MD +  T  + L      F+D RLPE+ FRYRARN+PHTLSE E++ W 
Sbjct: 371 AGFFGHGDKSTMDLVRATPADLLGEREFAFTDARLPEMLFRYRARNWPHTLSEAEQKRWR 430

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            H        R+ +Y  +L++L+ + +G+E    ++ +LY YL+ +
Sbjct: 431 LHCSDYF-SRRLPDYAPRLEALAEQNQGNERNFAILKSLYRYLEDL 475


>gi|149190027|ref|ZP_01868305.1| exonuclease I [Vibrio shilonii AK1]
 gi|148836193|gb|EDL53152.1| exonuclease I [Vibrio shilonii AK1]
          Length = 473

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 224/470 (47%), Positives = 301/470 (64%), Gaps = 3/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +  +DYET+G   A DR  QFAGVR D  +  I    V +C+P  DYLP PEA  IT
Sbjct: 5   QPTYFFFDYETWGVSPAKDRACQFAGVRTDENFNIIGEPLVIYCQPPSDYLPSPEAALIT 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ     G+ E EF  +IH   + PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 65  GITPQLCQEKGLSEPEFIAKIHHELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 124

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA +A  P+GI+WP  D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 125 WQNGNSRWDLLDVMRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHENAHDAMADV 184

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y Y  R K +L +L+DI NMTPL+HVSGM G     T+ + 
Sbjct: 185 IATIELAKKVKAAQPKLFDYFYSMRQKRKLNELVDIVNMTPLMHVSGMLGKECQYTSWVV 244

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L+ D +   DLD   L +RL+T HDEL     PVP+K +HLNKC
Sbjct: 245 PIAWHPTNQNAVIVADLAKDPQPLLDLDVDALHQRLYTRHDELAPDEKPVPLKLIHLNKC 304

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
           PIL P      E+ E  GID ++CL+NL L++Q   +R++   +Y+ +    +  DVD+Q
Sbjct: 305 PILAPAKTLTAENAESIGIDREQCLKNLALIKQHPEIREKLIGLYSIEREFENDGDVDTQ 364

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  D+  MD I  T P  LS L++ FSD R+  L FRYRARNFP +L E E+  
Sbjct: 365 LYSGFFSPADKSAMDIIRETDPNNLSALDISFSDPRIEPLLFRYRARNFPWSLDETEQAR 424

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W  H ++    SRIE Y   +++L  E++ DE K  ++ ++Y Y++ ++ 
Sbjct: 425 WANHCRE-FFESRIESYMLNMENLVHEHESDEKKLAILKSVYRYVERLVS 473


>gi|312884477|ref|ZP_07744181.1| exonuclease I [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367789|gb|EFP95337.1| exonuclease I [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 474

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 229/470 (48%), Positives = 302/470 (64%), Gaps = 3/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP QFAGVR DR +  I    V +C+P +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGTNPATDRPCQFAGVRTDRDFNIIGEPVVLYCQPPNDYLPSPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA  +G++E EF  +IH+  + PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKAQAEGLIEPEFIAKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA +A  P+GI WP  D+G  SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRACHALRPEGINWPQNDEGFPSFKLEHLSVANGIEHENAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   I   +PKLF+Y  D R+K +L  LIDI NMTPL+HVSGM G     T+ I 
Sbjct: 186 IATIEMAKKISVAQPKLFQYFLDMRHKRKLNDLIDIVNMTPLMHVSGMLGKECQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300
           PVAWHP  +++VI  +L+ D     DL++ QL +RL+T   EL       PIK VHLNK 
Sbjct: 246 PVAWHPTNQNAVICIDLARDPSAIFDLNAQQLHERLYTKRSELNDKEVSAPIKLVHLNKS 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
           PIL P      E  +R GID + CLENL +LR    +R++   +Y+ +     S DVD+ 
Sbjct: 306 PILAPAKTLTAEDAQRIGIDREACLENLAMLRNHPEIREKLIGVYSIEREFKKSSDVDAM 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF   D+  M  I  T PE LSTL++ F D R+ +L FRYRARNFP TLSE E+Q 
Sbjct: 366 LYDGFFNPADKTAMKIIRETDPECLSTLDISFDDERISKLLFRYRARNFPWTLSEPEQQK 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W  H ++     RIE+Y   L++L  E++    +  ++ ++Y++++ ++ 
Sbjct: 426 WANHCREYF-EQRIEDYMLNLENLVHEHEQCPKQMAILKSIYQHVETLVS 474


>gi|161502767|ref|YP_001569879.1| exonuclease I [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864114|gb|ABX20737.1| hypothetical protein SARI_00818 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 476

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 242/468 (51%), Positives = 330/468 (70%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  +   +VF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAAIRTDNDFNIVGEPDVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEACEKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWD+LDVMRA YA  P+GI WP  DDG  SF+L+ L  AN IEH NAHDA ADV
Sbjct: 129 WQHENSRWDILDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANDIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVH+SGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHISGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L  RL+T+  +L     VP+K VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRDRLYTAKADLGNNAAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    SS  +VD+QL
Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFSSPDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 369 YDGFFSDSDRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           L HR+++LT   +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 429 LAHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476


>gi|209695175|ref|YP_002263104.1| exonuclease I [Aliivibrio salmonicida LFI1238]
 gi|208009127|emb|CAQ79365.1| exodeoxyribonuclease I [Aliivibrio salmonicida LFI1238]
          Length = 474

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 225/469 (47%), Positives = 301/469 (64%), Gaps = 3/469 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F  +DYET+G   +LDRP QFAGVR D  +  I    V +C+P  DYLP PEA  ITG
Sbjct: 7   PSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPIDYLPSPEACLITG 66

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A+  G+ E EF  +IH   S PNTC +GYNNIRFDD  SR   YRNF++ Y WSW
Sbjct: 67  ITPQMAVSKGLSEPEFIAQIHNELSKPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWSW 126

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWDLLDVMRA+YA  P+GI+WP  ++G  SF+L+ L+ ANGIEH NAHDA ADV 
Sbjct: 127 QNGNSRWDLLDVMRAVYALRPEGIEWPKDEEGKPSFRLEKLSQANGIEHENAHDAMADVI 186

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ L  ++++ +PK+F YL   R+K +   LIDI  MTPL+HVSGMFG  R N + I P
Sbjct: 187 ATIELAKVVKKAQPKMFNYLLSMRHKKKAATLIDIIEMTPLMHVSGMFGVDRGNISWIVP 246

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           VAWHP   ++VI  +L+ D  VF +LD+ QL +R++T   EL    +PVP+K VHLNKCP
Sbjct: 247 VAWHPTNNNAVITIDLALDPAVFLELDAEQLHQRMYTKRSELGPDELPVPVKLVHLNKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
           IL P      E+     +D + CL NL ++R+   +R +   +YN       S +VD+ L
Sbjct: 307 ILAPAKTLTAENAIALNVDREACLRNLKVIRENPEIRQKLIDLYNIEPGYEKSSNVDTLL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  D+  +D I ++ PEQL       SD R+  L FRYRARNFPHTL+E E+  W
Sbjct: 367 YDGFFSHADKTAIDMIRQSTPEQLIDFEPNVSDPRIKPLLFRYRARNFPHTLNESEQLRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
             H +     + + +Y+ + +SL  E +G+E K  ++ A+Y Y+Q ++ 
Sbjct: 427 QAHLQDYF-ETHMSDYETRFESLYLESEGNEKKTAILRAVYNYVQQLVS 474


>gi|119775108|ref|YP_927848.1| exonuclease I [Shewanella amazonensis SB2B]
 gi|119767608|gb|ABM00179.1| Exodeoxyribonuclease I subunit C [Shewanella amazonensis SB2B]
          Length = 470

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 220/468 (47%), Positives = 287/468 (61%), Gaps = 5/468 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 +DYETFG   A DRPAQFAGVR D     I+    F+C+ + DYLP PEA+ IT
Sbjct: 6   QPTIFWHDYETFGASPAKDRPAQFAGVRTDLDLNIIDEPVTFYCRLSPDYLPAPEAILIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A R G+ E EF  RI   FS PNTC+ GYN++RFDD  SR  FYRNF D Y   
Sbjct: 66  GITPQLANRQGLPETEFMGRIQAIFSRPNTCVAGYNSLRFDDEVSRYGFYRNFIDPYARE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWD++D++RA YA  P+GI WP ++DG+ SFKL+ L  ANG+ H  AHDA +DV
Sbjct: 126 WQQGNSRWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTAANGLGHDKAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+AL  LI+EK+PKLF+Y +  R K  + + ID+  M PLVH+S    A++    LIA
Sbjct: 186 YATIALARLIKEKQPKLFDYYFRLRRKQAVAEQIDVLAMQPLVHISSKIPATQGCATLIA 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVA H R K++VI  NL+ D++   DLD   L  RL+T  ++L    +PVP+K++HLNKC
Sbjct: 246 PVAHHMRNKNAVICVNLAMDIQPLIDLDVDALRTRLYTKREDLANDELPVPVKQIHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P +         + ER GID     E   LL+Q   +R++  A++ +     S D D  L
Sbjct: 306 PFVANAKTLDDANAERLGIDKAFAREQYRLLKQHPEIREKLTALFEEEPQGMSNDPDYSL 365

Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+  DR  MD I  T+PE L+ L L F D RLPE+ FRYRARN+P TLS  E   
Sbjct: 366 YSGGFFSPADRAKMDIIRNTSPEHLAALELQFDDTRLPEMLFRYRARNYPLTLSYDESLR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W E  +  L      +Y  +L++L  E   DE K+ L+ AL +YLQ +
Sbjct: 426 WREFCQARLND---PDYVIRLENLLEETTKDEKKQKLLGALCQYLQSL 470


>gi|284007268|emb|CBA72582.1| exodeoxyribonuclease I [Arsenophonus nasoniae]
          Length = 474

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 241/469 (51%), Positives = 327/469 (69%), Gaps = 1/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG+  ALDRPAQFAG+R D  +  IE  ++F+C PADDYLP P+AV IT
Sbjct: 6   KSSFLFHDYETFGQHPALDRPAQFAGIRTDSNFNIIEDPQIFYCAPADDYLPQPQAVMIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A+  G+ EAEF++RIH  FS+ N+CI+GYNNIRFDD  +R+IFYRNFYD Y +S
Sbjct: 66  GITPQYAIAHGINEAEFAKRIHGIFSIANSCILGYNNIRFDDEVTRHIFYRNFYDPYAYS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDV+RA YA  PDGI WPS D+G  SFKL+ L + NGIEH NAHDA ADV
Sbjct: 126 WQQGNSRWDLLDVLRACYALRPDGINWPSNDEGLPSFKLEHLTVVNGIEHANAHDATADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +  LI++ +PK+F+Y +  RNKN++++LIDI  MTPLVHVSGMFGA R+NT+LIA
Sbjct: 186 LATIEMAKLIKQAQPKMFDYFFRLRNKNEVKQLIDIIAMTPLVHVSGMFGAIRANTSLIA 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  ++++I C+L+ D+     LDS  L +RL+T  DEL G + +PIK +H+NKCP
Sbjct: 246 PLAWHPENRNAIIACDLAADISPLLTLDSDTLRQRLYTPKDELAGELAIPIKLIHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQL 360
           IL P +  +    +R  +D   C  NL +LRQ + +RD+   ++       ++ DVD+ L
Sbjct: 306 ILAPANTLRTADAQRIALDLDVCQNNLAILRQHSEVRDKVIRLFTEAQPFPAATDVDAML 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y GFF D DR  M  I +T P+ L  L+L F D R+ +LFFRYRARN+P TL+E+E+  W
Sbjct: 366 YSGFFGDNDRSTMAIIRQTLPQNLPALDLKFDDPRMRQLFFRYRARNYPATLTEQEQLAW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L HR+  LT  +I +Y   ++ L  E++ ++ K   + AL +Y   +  
Sbjct: 426 LHHRRDRLTCEKISQYLQTIEQLFAEHQENKEKCQQLKALVDYANQIAS 474


>gi|288942185|ref|YP_003444425.1| Exodeoxyribonuclease I [Allochromatium vinosum DSM 180]
 gi|288897557|gb|ADC63393.1| Exodeoxyribonuclease I [Allochromatium vinosum DSM 180]
          Length = 477

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 199/476 (41%), Positives = 289/476 (60%), Gaps = 10/476 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M++ F  +DYET+G D   DRP QFAGVR D    ++    V FC+P+DD LP P+A  +
Sbjct: 1   MSDTFYWHDYETWGADPRRDRPCQFAGVRTDADLNEVGDPLVLFCRPSDDLLPHPDACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TG+TPQ+  R+GVVEAEF+R IH   S P TC +GYN++RFDD  +R++FYRNF+D Y  
Sbjct: 61  TGLTPQRVAREGVVEAEFARAIHAELSRPGTCGVGYNSLRFDDEVTRHLFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W +GNSRWDL+DV+R  +A  P+GI+WP  D+G TSF+L+ L +ANGI+H  AHDA AD
Sbjct: 121 EWRSGNSRWDLIDVLRLAHALRPEGIEWPLNDEGTTSFRLEQLTVANGIDHGQAHDALAD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL   +R+ +P+LF Y    R+K ++R L+D     PL+HVS  F A+    A I
Sbjct: 181 VRATIALARRLRDIQPRLFSYALTLRDKRRVRALLD--ERRPLLHVSARFPAALGCIAPI 238

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            PVA HP   + VI  +L  D     +L   ++ +RLFT  ++L  G+  VP+K VH+N 
Sbjct: 239 CPVAAHPTNSNGVICFDLRADPSQLLELSVEEIRRRLFTPSEDLPAGVERVPLKTVHVNH 298

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
            P+L P+     E  ERW ID  R + +   +   +   +      ++       D +  
Sbjct: 299 VPMLAPLATLTPERAERWSIDPARVVRHAQWIAASSIAIESRVRAVHERPLPVETDPELM 358

Query: 360 LYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           LY G F +D DR+  D+++R+ P +L+T    FSD RL  L FRYRARN+P TL+ +E++
Sbjct: 359 LYSGGFLSDADRRACDQVVRSNPAELATAPPRFSDPRLGTLLFRYRARNWPETLTPEERE 418

Query: 419 DWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           DW  +R   LT         IE Y+ +L  L+G +  D  +  +++AL ++ + V+
Sbjct: 419 DWDAYRFMRLTDPDGGASLQIEGYEARLAELAGVHDDDPARLAILDALGDWAEQVL 474


>gi|333003504|gb|EGK23045.1| exodeoxyribonuclease I [Shigella flexneri K-272]
 gi|333017330|gb|EGK36648.1| exodeoxyribonuclease I [Shigella flexneri K-227]
          Length = 474

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 239/468 (51%), Positives = 325/468 (69%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPRAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PL HVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LD   L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 247 PLAWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR ++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474


>gi|110805983|ref|YP_689503.1| exonuclease I [Shigella flexneri 5 str. 8401]
 gi|110615531|gb|ABF04198.1| Exodeoxyribonuclease I [Shigella flexneri 5 str. 8401]
          Length = 474

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 237/468 (50%), Positives = 324/468 (69%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PL HVSGMFGA R NT+ +A
Sbjct: 187 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LD   L + L+T+  +L     VP+K VH++KCP
Sbjct: 247 PLAWHPENRNAVIMADLAGDISPLLELDIDTLRELLYTAKADLGDNAAVPVKLVHIDKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S +VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL   E+Q W
Sbjct: 367 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR ++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + ++
Sbjct: 427 LEHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474


>gi|300723649|ref|YP_003712954.1| exonuclease I [Xenorhabdus nematophila ATCC 19061]
 gi|297630171|emb|CBJ90808.1| exonuclease I, 3'-> 5'-specific; deoxyribophosphodiesterase
           [Xenorhabdus nematophila ATCC 19061]
          Length = 476

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 248/469 (52%), Positives = 320/469 (68%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLPDPEAV IT
Sbjct: 7   QQSFYFHDYETFGKHPALDRPAQFAGVRTDSDFNIIEEPLVVYCAPADDYLPDPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+AL  GV E EF+R+IH+  S PNTCI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQQALTKGVNEVEFARQIHEVLSKPNTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDV+RA YA  P+GI WP  DDG  SFKL+ L  ANGIEH +AHDA +DV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGIEHTHAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L+++ +P+LF+Y +  RNK ++   IDI  M PLVHVSGMFGA RSN +LIA
Sbjct: 187 YATIAMAKLVKKAQPRLFDYFFQLRNKQKIINQIDIPQMKPLVHVSGMFGALRSNISLIA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
           P+AWHP  +++VI C+L+GD+    + +  +L KRL+T  DEL+    PVPIK VH+NKC
Sbjct: 247 PLAWHPTNRNAVIMCDLAGDISPLLEPNVDELRKRLYTRRDELQPNQSPVPIKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PI+ P +  + E  ER  +D  +C  NL +LR    +R+R   ++ +      S +VD++
Sbjct: 307 PIIAPENTLRPEDAERVELDRNQCEYNLAILRNHPQIRERVVELFSSPEEFPESDNVDAK 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF D D+  M+ I +TAP+ L  L+L F D R+  L FRYRARN+P TL   E+Q 
Sbjct: 367 LYSGFFGDADKTAMEIIRKTAPQNLPALDLTFQDERIKALLFRYRARNYPATLDYDEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           WL HR+ +LT+  I +Y   +++L  EY+ DE K   +  L EY   + 
Sbjct: 427 WLRHRQDILTQESISQYLATIEALFVEYQSDEEKCRQLKTLVEYAVQLA 475


>gi|119476956|ref|ZP_01617237.1| Exonuclease I [marine gamma proteobacterium HTCC2143]
 gi|119449763|gb|EAW31000.1| Exonuclease I [marine gamma proteobacterium HTCC2143]
          Length = 478

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 199/477 (41%), Positives = 287/477 (60%), Gaps = 9/477 (1%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT+  F  +DYETFG D A DRP+QFAGVR D  +  I    V FCKPA D LP PEA  
Sbjct: 1   MTDFSFYWHDYETFGADPARDRPSQFAGVRTDSDFNIIGEPLVIFCKPAADILPQPEACL 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           ITGITPQ+AL  GV EAEF R+IH  FS P TC +GYN++RFDD  SR   YRNFYD Y 
Sbjct: 61  ITGITPQQALEQGVCEAEFIRQIHAEFSQPGTCAVGYNSVRFDDEVSRYTLYRNFYDPYA 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             W NGNSRWD++D++R   A  P+GI WP+ D+G  SFKL+ L  ANGI H +AHDA +
Sbjct: 121 REWQNGNSRWDIIDMVRVCCALRPEGINWPTHDNGMPSFKLEQLTAANGISHESAHDALS 180

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DV+AT+A+  LI++K+PKLF+YL   R+K+++  ++++    P++H S M+ A R  T L
Sbjct: 181 DVHATIAMAKLIKQKQPKLFDYLLKLRSKHEVSAMLNVAEKLPVLHTSAMYPAHRFCTTL 240

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
           I PVA HP  K+ VI  +LS D      L++ Q+ +RL+T   EL +G   +P+K +H+N
Sbjct: 241 IMPVAVHPTNKNGVICYDLSVDPAPLLSLNAGQITERLYTPASELPEGAARIPLKTIHIN 300

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           +CP+++      +   ER  +D  +  ++   L +   L ++   ++ +       D D 
Sbjct: 301 RCPVVVTSKLMDEAVAERIQLDLPKARKHYQALVKTQGLAEKLSEVFAERSFPERTDPDV 360

Query: 359 QLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
            LY  GFF+  D+ +M ++  ++P++L   +  F D RL ++ FRYRARNFP +LS +E 
Sbjct: 361 MLYSGGFFSQNDKAVMAQVRCSSPDELREHSFVFEDARLDDMLFRYRARNFPESLSAEEL 420

Query: 418 QDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           Q W E R   LT         +EE+    Q+L  +    +    ++  L +Y   ++
Sbjct: 421 QQWHEFRYYRLTDPEADVSISMEEFLETTQALLNDEACSDRDRAILEELQDYSDSLL 477


>gi|260772965|ref|ZP_05881881.1| exodeoxyribonuclease I [Vibrio metschnikovii CIP 69.14]
 gi|260612104|gb|EEX37307.1| exodeoxyribonuclease I [Vibrio metschnikovii CIP 69.14]
          Length = 480

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 224/470 (47%), Positives = 305/470 (64%), Gaps = 3/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   DYET+G   A DRP+QFAGVR D  +  I    V +C+   DYLP PEA  IT
Sbjct: 12  QQTFFFLDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPSDYLPSPEAALIT 71

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA+ +G+ E EF  RIH   + PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 72  GITPQKAMAEGLPEPEFIARIHAELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 131

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDVMRA +A  P+GI+WP   +G TSFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 132 WQQGNSRWDLLDVMRACHALRPEGIEWPENQEGFTSFKLEHLSKANGIEHSNAHDAMADV 191

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   I+  +PKLF+Y    R+K +L  L+DI NMTPL+HVSGM G  RS T+ + 
Sbjct: 192 IATIELAKKIKAAQPKLFDYFLSMRHKRKLIDLVDIVNMTPLMHVSGMLGRERSYTSWVV 251

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L+ +     +L S QL +RL+T HD+L +G +P P+K +HLNKC
Sbjct: 252 PIAWHPTNQNAVIVVDLAKNPEPLFELTSEQLLQRLYTKHDDLAEGELPAPVKLIHLNKC 311

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
           PIL P      E+    GI+ ++CL +L+ +RQQ  LR++   +++ +   S+S DVDSQ
Sbjct: 312 PILAPAKTLTAENAATIGINREQCLAHLSQIRQQPTLREKLVDVFSAERDFSASSDVDSQ 371

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+  DR  MD I   APE L+ L++ FSD+R+  L FRYRAR++P TL+E E++ 
Sbjct: 372 LYDGFFSPSDRAAMDIIRSAAPESLADLDIQFSDQRIAPLLFRYRARHYPWTLNETEQRR 431

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W  H +       +  Y   L++L  +++ D  K  ++ A+Y Y++ +  
Sbjct: 432 WASHCQDYFATQ-LPSYMLNLENLVEQHQHDAKKIAILKAVYHYVEALAS 480


>gi|89330232|emb|CAJ84173.1| exodeoxyribonuclease I [Escherichia coli K-12]
          Length = 467

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 243/467 (52%), Positives = 324/467 (69%), Gaps = 7/467 (1%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RNK++L  LID+  M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +R++  AI+ +    + S
Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
             E+Q WLEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL
Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467


>gi|307546461|ref|YP_003898940.1| exonuclease I [Halomonas elongata DSM 2581]
 gi|307218485|emb|CBV43755.1| exonuclease I [Halomonas elongata DSM 2581]
          Length = 506

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 200/485 (41%), Positives = 283/485 (58%), Gaps = 18/485 (3%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+ +DYETFG D   DRP+QFA +R D  + +I      FCKPADDYLP P+A  ITGI
Sbjct: 20  TFLWHDYETFGADPRRDRPSQFAAIRTDADFNEIGEPIELFCKPADDYLPHPQACLITGI 79

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+A R G+ EAEF+ R+    S P TC +GYNN+RFDD   R++FYRN  D Y   W 
Sbjct: 80  TPQQAKRRGLPEAEFAGRVQAAMSEPGTCALGYNNLRFDDEVGRHLFYRNLIDPYAREWQ 139

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDL+DV+RA +A  PDGI WP+RDDG  SFKL+DL  ANGIEH  AHDA ADV A
Sbjct: 140 NGNSRWDLIDVVRAFHALRPDGITWPTRDDGTPSFKLEDLTAANGIEHAGAHDALADVRA 199

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+ L  L+R     LF+YL   R K  + + ID+ +  P++H+S  + ASR  +AL+ P+
Sbjct: 200 TIELARLLRRSNANLFDYLLGMRGKRAVGRAIDVASRKPVLHISRRYPASRGCSALVMPL 259

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           A HP   + VI  +L+ D      LD+ Q+  R+F S+D+L +G   +P+K +H+NKCP+
Sbjct: 260 AEHPTNPNGVIVYDLAVDPEPLLSLDAQQIRDRVFVSNDDLAEGESRIPLKVIHINKCPV 319

Query: 303 LMPIDYCKK----------EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS 352
           +MP +  K           E  ER G+D   C  +   L    ++  R   ++  P   S
Sbjct: 320 IMPANALKDASGPHRGEYGEIVERLGVDVASCRRHWKALAASPDVSARVAEVFAGPPPES 379

Query: 353 SQDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
             D D  LY  GFF+  DRQ M R+  + P  L      F D RL E+ FRYRAR++P T
Sbjct: 380 PHDPDLMLYSGGFFSPSDRQQMQRVRDSDPWDLVGARFAFQDPRLEEMLFRYRARSYPDT 439

Query: 412 LSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
           L+ +E+  W   R + +         + E+  +++ L+     D  ++ ++  L  +++ 
Sbjct: 440 LTGEEQARWEAFRWERMNDPAVAGFTLTEFAREIERLNQVSLADRERQ-ILEELVMHVEA 498

Query: 467 VIPKE 471
           ++P +
Sbjct: 499 IMPAQ 503


>gi|315180353|gb|ADT87267.1| exonuclease I [Vibrio furnissii NCTC 11218]
          Length = 473

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 224/470 (47%), Positives = 305/470 (64%), Gaps = 3/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +  +DYET+G   A DRP+QFAGVR D ++  I    V +C+   DYLP PEA  IT
Sbjct: 5   QPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPTPEAALIT 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI PQKA+  G+ E EF  +IH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 65  GIIPQKAMAQGLPEPEFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWS 124

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA +A  P+G+ WP  D+G TSFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 125 WQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTSFKLEHLSKANGIEHENAHDAMADV 184

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLFEY +  R+K +L +LIDI NMTPL+HVSGM G     T+ I 
Sbjct: 185 IATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIV 244

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L+ D +   DLD   L  RL+T HD+L    +PVP+K VHLNKC
Sbjct: 245 PIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKC 304

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
           PIL P      E+    GID + CL NL  +RQ  ++R++  A+++ +    +S DVD+Q
Sbjct: 305 PILAPAKTLTAENAATIGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQ 364

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+  D+  M+ I  T PE L  L++ FSD+R+  L FRYRARNFP TL ++E++ 
Sbjct: 365 LYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKRIEPLLFRYRARNFPWTLDDEEQRR 424

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W  H +     + + +Y   L++L  E++ DE K  ++ ++Y+Y++ +  
Sbjct: 425 WANHCRDY-YETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS 473


>gi|330446032|ref|ZP_08309684.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490223|dbj|GAA04181.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 473

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 227/467 (48%), Positives = 307/467 (65%), Gaps = 3/467 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
                DYETFG   A DRP QFAGVR D     I    V +CKP  DYLP PEA  ITGI
Sbjct: 8   TLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+A+  G+ E EF   IH   S PNTC+IGYNN+RFDD  +R   YRNF+D Y W+W 
Sbjct: 68  TPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAWQ 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD+MR  YA  PDG+ WP  D+   SFKL+ L++ANGIEH NAHDA ADVYA
Sbjct: 128 NGNSRWDLLDIMRTCYALRPDGLNWPLDDEDRPSFKLEKLSVANGIEHANAHDAMADVYA 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+ L  +++  +PKLF+YL+D R+K +L+ L+DI N+TPLVH+SGMFG    NT+ I P+
Sbjct: 188 TIELAKIVKTNQPKLFDYLFDLRHKRKLQDLVDIVNLTPLVHISGMFGTDCGNTSWIVPL 247

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHP  K++VI  NL+ D     +LD+ QL +RL+T   +L    +PVPIKEVHLNKCP+
Sbjct: 248 AWHPDNKNAVITVNLALDPTPLIELDADQLRERLYTKRIDLAPDELPVPIKEVHLNKCPV 307

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
           L P    K E   R GID ++CL++L L++Q   +R++   +++ K    ++ +VD+ LY
Sbjct: 308 LAPAKTLKAEDAARLGIDREQCLKHLALIKQHPEIREKVLEMFSVKREYDANDNVDAMLY 367

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGFF+  DR  MD I  T  +QL +L +   D+R+  L FRYRARNFP TLS +E+  W 
Sbjct: 368 DGFFSTADRSTMDIIRETPADQLGSLEINVDDKRIKPLLFRYRARNFPMTLSYEEQVRWK 427

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            H +     + + +Y    ++++ EY+ DE K  ++ +LY+Y+  ++
Sbjct: 428 HHCQD-FFEANMPKYMENFEAVAYEYESDENKMKILKSLYDYVSKLV 473


>gi|260768651|ref|ZP_05877585.1| exodeoxyribonuclease I [Vibrio furnissii CIP 102972]
 gi|260616681|gb|EEX41866.1| exodeoxyribonuclease I [Vibrio furnissii CIP 102972]
          Length = 473

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 224/470 (47%), Positives = 305/470 (64%), Gaps = 3/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +  +DYET+G   A DRP+QFAGVR D ++  I    V +C+   DYLP PEA  IT
Sbjct: 5   QPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALIT 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI PQKA+  G+ E EF  +IH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 65  GIIPQKAMAQGLPEPEFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWS 124

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA +A  P+G+ WP  D+G TSFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 125 WQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTSFKLEHLSKANGIEHENAHDAMADV 184

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLFEY +  R+K +L +LIDI NMTPL+HVSGM G     T+ I 
Sbjct: 185 IATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIV 244

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L+ D +   DLD   L  RL+T HD+L    +PVP+K VHLNKC
Sbjct: 245 PIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKC 304

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
           PIL P      E+    GID + CL NL  +RQ  ++R++  A+++ +    +S DVD+Q
Sbjct: 305 PILAPAKTLTAENAATIGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQ 364

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+  D+  M+ I  T PE L  L++ FSD+R+  L FRYRARNFP TL ++E++ 
Sbjct: 365 LYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKRIDPLLFRYRARNFPWTLDDEEQRR 424

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W  H +     + + +Y   L++L  E++ DE K  ++ ++Y+Y++ +  
Sbjct: 425 WANHCRDY-YETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS 473


>gi|157962308|ref|YP_001502342.1| exonuclease I [Shewanella pealeana ATCC 700345]
 gi|157847308|gb|ABV87807.1| Exodeoxyribonuclease I [Shewanella pealeana ATCC 700345]
          Length = 470

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 202/468 (43%), Positives = 285/468 (60%), Gaps = 5/468 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 +DYETFG + A DRP+QFAGVR D     I   E F+CK A+DYLP PEA+ IT
Sbjct: 6   QPTLFWHDYETFGANPAKDRPSQFAGVRTDMDLNIIGEPETFYCKLANDYLPSPEAILIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ EAEF  +I+  FS P TC++GYN++RFDD  SR  FYRNF D Y   
Sbjct: 66  GITPQLANLKGMPEAEFMDKINSLFSQPKTCVVGYNSLRFDDEVSRYGFYRNFIDPYARE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD++D++RA YAF P+GI WP ++DG+ SFKL+ L +ANG+ H  AHDA +DV
Sbjct: 126 WQNGNSRWDIIDLVRACYAFRPEGINWPEKEDGSPSFKLEQLTVANGLSHEKAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ +  LI+  +PKLF+Y +  R K Q+ KLID+  M PLVHVS    A    T +IA
Sbjct: 186 YATIDMAKLIKSVQPKLFDYYFSLRLKQQVSKLIDVLEMKPLVHVSSKISALNGCTTIIA 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVA+H   K++VI  NL+ D+    +L   ++ +R++T   +L    +P+ +K++H+NK 
Sbjct: 246 PVAYHSTNKNAVICVNLAMDVTPLIELSVEEIRERMYTRRSDLAPDELPIGLKQIHINKS 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P +   +    E+  R   D          L+Q   LR++  A+++  +   + D D  L
Sbjct: 306 PFIAAANTLTDENAARLDFDKAFARAQYKKLKQHPELREKLVAVFDVEHEGKTVDPDQAL 365

Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+  D+  ++ I  T P  L+ L L F D+RL E+ FRYRARN+P TL + E+  
Sbjct: 366 YSGGFFSSADKAKIEIIRHTQPRNLAALELDFDDQRLSEMLFRYRARNYPETLDDSEQYR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W E  +  L      +Y  +L++L  E + DE K+ L+ AL  YL+ +
Sbjct: 426 WREFCQTRLND---PDYIIRLENLLEETEQDESKQKLLQALCHYLRNL 470


>gi|253989171|ref|YP_003040527.1| exonuclease I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780621|emb|CAQ83783.1| exodeoxyribonuclease i (exonuclease i) (dn
           deoxyribophosphodiesterase) [Photorhabdus asymbiotica]
          Length = 476

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 246/469 (52%), Positives = 325/469 (69%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   QPTFYIHDYETFGKHPALDRPAQFAGVRTDMDFNIIEDPLVIYCSPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  G+ EAEF+R+IH  FSVPN CI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQVALEKGINEAEFARKIHNVFSVPNCCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDV+RA YA  P+GI WP  DDG  SFKL+ L  ANG+EH +AHDA +DV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHSHAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L+++ +P++F+Y +  RNK ++  LIDI  M PLVHVSGMFGA+RSNT+L+A
Sbjct: 187 YATIAMAKLLKKAQPRMFDYFFQLRNKQKISNLIDIPQMKPLVHVSGMFGAARSNTSLVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI C+L+GD+    +LD+  L +RL+T HDE L    P P+K VH+NKC
Sbjct: 247 PLAWHPINRNAVIMCDLAGDISPLLELDADALRERLYTRHDELLPDQPPAPVKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           PI+ P +  + E  ER G+D   C +NL +LR    +R++   ++ +      S +VD++
Sbjct: 307 PIIAPDNTLRAEDAERLGLDRDHCEKNLAILRNNPQIREKVVELFAQAEPFPESDNVDAK 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+D D+  M+ I  T P+ L  L+L F D R+  L FRYRARN+P TL+  E+Q 
Sbjct: 367 LYDGFFSDADKTAMNIIRETLPQNLPALDLTFQDPRIKTLLFRYRARNYPSTLTYDEQQR 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           WL HR+ +LT+ ++ EY   ++ L  E++ +E K   +  L EY   + 
Sbjct: 427 WLRHRQDVLTQDKLSEYIFIIEQLFIEHQSNEEKCRQLKTLMEYAVKLA 475


>gi|83647678|ref|YP_436113.1| exonuclease I [Hahella chejuensis KCTC 2396]
 gi|83635721|gb|ABC31688.1| Exonuclease I [Hahella chejuensis KCTC 2396]
          Length = 483

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 211/480 (43%), Positives = 288/480 (60%), Gaps = 11/480 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F  YD+ET+G D   DRP+QFAGVR D     IE   V +C PA+D LP PEA  I
Sbjct: 1   MADTFYWYDFETWGADPRRDRPSQFAGVRTDLDLNPIEKPLVMYCMPAEDVLPQPEACLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQKAL +GV EAEF R IH+ FS P TC++GYN+IRFDD  +RN  YRNFYD Y  
Sbjct: 61  TGITPQKALSEGVSEAEFIRLIHEQFSRPGTCVVGYNSIRFDDEVTRNTLYRNFYDPYSR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWD++D++R  YA  PDGI WP   +G  SF+L++L  ANG+ H  AHDA +D
Sbjct: 121 EWRNGNSRWDVIDMVRLTYAMRPDGINWPMNAEGVPSFRLEELTKANGVTHEAAHDAMSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+A+  LI+  +PKL++Y+  +RNK  L  L+DI+ M PL HVS  F A+    A++
Sbjct: 181 VYATIAVARLIKTAQPKLYDYVLGHRNKKVLEGLVDIERMKPLFHVSSKFPAALGCCAMV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
           AP+A HP   + VI  +L  D   +  L   ++ +R+FTS+++L +G   +P+K VHLNK
Sbjct: 241 APIARHPTNPNGVIVYDLRADPSTWTHLPVEKIRERIFTSNEDLPEGAERIPLKVVHLNK 300

Query: 300 CPILMPIDYCKKEHFER---WGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
           CPIL+     K    ER   + +D  +   +L  LRQ  N++ R   ++N+P   S  D 
Sbjct: 301 CPILVESKILKTMDPERLRGFQLDGDKLRSHLQALRQAENIQQRVAEVFNEPMDDSETDP 360

Query: 357 DSQLYDGFFADVDRQIMDRI-LRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           D  LY G F   + + +       +PE L  L LPF D RL E+ FRYRARNFP TL+E+
Sbjct: 361 DLMLYSGGFFSNNDRELMTFIHEQSPEVLGELELPFEDPRLQEMLFRYRARNFPGTLNEE 420

Query: 416 EKQDWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           E + W  +R   L           + Y  KL+ L+        +  ++  L+ Y + +IP
Sbjct: 421 EMEKWERYRYHRLAGESSGASISFQAYFKKLEQLAANPDITPFQLSILQDLHLYGESIIP 480


>gi|90415078|ref|ZP_01223036.1| putative exonuclease I [Photobacterium profundum 3TCK]
 gi|90323813|gb|EAS40426.1| putative exonuclease I [Photobacterium profundum 3TCK]
          Length = 474

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 227/467 (48%), Positives = 305/467 (65%), Gaps = 3/467 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T      DYETFG   A DR  QFAGVR D  +  I    V +CKP  DYLP PEA  IT
Sbjct: 6   TPTLYWIDYETFGATPATDRACQFAGVRTDMDFNIIGEPLVIYCKPPVDYLPSPEACLIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G+ E EF  +IH   S PNTC+IGYNN+RFDD  +R   YRNFYD Y W 
Sbjct: 66  GITPQEAQEKGLSEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYDPYAWG 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLD+MR  YA  P+G+ WP+ D+G  SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDIMRTCYALRPEGVNWPNNDEGLPSFKLEHLSVANGIEHANAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ L  +++  +PKLF YL+D R+K +L++L+DI N+TPLVHVSGMFG    NT+ I 
Sbjct: 186 YATIELAKILKTNQPKLFNYLFDLRHKRKLQELVDIVNLTPLVHVSGMFGVGCGNTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
           P+AWHP  K++VI  NL+ D     +LD+ Q+ +R++T   ELK   +P+P+K VHLNKC
Sbjct: 246 PMAWHPDNKNAVITVNLAQDPTPLIELDADQIRERMYTKRSELKPDELPIPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
           P+L P    K E   R GID  +CL+NL +L++   +R++  AI+  +     + DVDS 
Sbjct: 306 PVLAPAKTLKAEDANRIGIDRAQCLKNLQILKEHPEIREKLVAIFAVQREYKENTDVDSM 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF++ DR  +D I  + PE L+ + L   D+R+  L FRYRARNFP TL+ +E+Q 
Sbjct: 366 LYDGFFSNSDRSSIDIIRESTPEALAEIQLNVEDKRIKPLLFRYRARNFPLTLNYEEQQK 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
           W  H +    +  +  Y    ++++ E + +E K  ++ ALY+Y+  
Sbjct: 426 WKHHCQD-FFQDNLPAYMENFEAVATENQSNEHKMKILKALYDYINN 471


>gi|90578663|ref|ZP_01234473.1| putative exonuclease I [Vibrio angustum S14]
 gi|90439496|gb|EAS64677.1| putative exonuclease I [Vibrio angustum S14]
          Length = 473

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 230/467 (49%), Positives = 311/467 (66%), Gaps = 3/467 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
                DYETFG   A DRP QFAGVR D     I    V +CKP  DYLP PEA  ITGI
Sbjct: 8   TLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+A+  G+ E EF   IH   S PNTC+IGYNN+RFDD  +R   YRNF+D Y W+W 
Sbjct: 68  TPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAWQ 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD+MR  YA  P+G+ WP  D+   SFKL+ L++ANGIEH NAHDA ADVYA
Sbjct: 128 NGNSRWDLLDIMRTCYALRPEGVNWPLDDEDRPSFKLEKLSIANGIEHANAHDAMADVYA 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+ L  +I+  +PKLF+YL+D R+K +L++LIDI N+TPLVH+SGMFG    NT+ I PV
Sbjct: 188 TIELAKIIKTNQPKLFDYLFDLRHKRKLQELIDIVNLTPLVHISGMFGTDCGNTSWIVPV 247

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHP  K++VI  NL+ D     +LD+ QL +RL+T   +L    +PVP+KEVHLNKCP+
Sbjct: 248 AWHPDNKNAVITVNLALDPTPLIELDTDQLRERLYTKRVDLAPDELPVPVKEVHLNKCPV 307

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
           L P    K E   R GID ++CL+NL L++Q   +R++   +++ K   +++ +VD+ LY
Sbjct: 308 LAPAKTLKAEDAARLGIDREQCLKNLALIKQHPEIREKLIEMFSVKREYAANDNVDAMLY 367

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGFF+  DR  MD I  TAP+QL++L +   D+R+  L FRYRARNFP TLS +E+  W 
Sbjct: 368 DGFFSTADRSTMDIIRETAPDQLASLEINVDDKRIKPLLFRYRARNFPMTLSYEEQVRWK 427

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            H +       + +Y    ++++ E++ DE K  ++ +LY+Y+  ++
Sbjct: 428 HHCQD-FFEMNMPKYMENFEAVAYEHESDENKMKVLQSLYDYVSKLV 473


>gi|327483926|gb|AEA78333.1| Exodeoxyribonuclease I [Vibrio cholerae LMA3894-4]
          Length = 474

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473


>gi|89095382|ref|ZP_01168297.1| exodeoxyribonuclease I [Oceanospirillum sp. MED92]
 gi|89080350|gb|EAR59607.1| exodeoxyribonuclease I [Oceanospirillum sp. MED92]
          Length = 488

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 288/473 (60%), Gaps = 7/473 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F  +DYETFG D   D P QFAG+R D     IE   + +CKP+DD LP PEA  ITGI
Sbjct: 7   TFYWHDYETFGADPKRDWPVQFAGIRTDEHLNVIEEPLMVYCKPSDDQLPYPEACLITGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQKA+ +G+ EA+F  +IH+  + P TC +GYN+IRFDD  +R   YRNF+D Y   W 
Sbjct: 67  TPQKAMDEGLCEADFFAKIHEQLARPGTCGVGYNSIRFDDEVTRYGLYRNFFDPYAREWQ 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NG SRWD++D++R      P+GI WP  +DG  S +L+DL +ANGI+H +AHDA +DVYA
Sbjct: 127 NGCSRWDIIDMLRLTRTLRPEGIVWPKYEDGTPSLRLEDLTVANGIDHGHAHDALSDVYA 186

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+ +  L+REK+PKLF Y+ + R+K  ++ L+D Q+  P++H+S  +     NTA++AP+
Sbjct: 187 TIEMAKLVREKQPKLFNYVLNNRSKQSIQSLLDTQSFKPVLHISSRYAIEYGNTAVVAPI 246

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP-IKEVHLNKCPI 302
           A HP  K+ VI  +L  +      L + +L + L+T   EL    P   +K+VH+NKCPI
Sbjct: 247 ATHPVNKNGVIVWDLRFNPEPLMQLSAEELRQLLYTPRAELDDSDPRIALKQVHINKCPI 306

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P      E   R  I+  +C  +L +LR  T  R++   IY++    +  D D  LY 
Sbjct: 307 IAPAGMISSEEAARLQINGDQCRAHLQMLRSYTGFREKLADIYSESPFDTDSDPDQMLYS 366

Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
            GFF   DRQ+MD++  + P+QL+ L+LPF D RL E+  RY+ARN PH L+ +++  W 
Sbjct: 367 GGFFTPSDRQLMDQVRESGPDQLAELDLPFQDPRLEEMLLRYKARNCPHVLNHEDQMQWE 426

Query: 422 EHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
            +R++ L +       +E++  +L  L  E + DE ++ ++  L  Y + + P
Sbjct: 427 TYRQRKLLKGEGGHLTMEKFYQRLNELYAEAETDEKRKHILEELAVYAEAIYP 479


>gi|229515610|ref|ZP_04405069.1| exodeoxyribonuclease I [Vibrio cholerae TMA 21]
 gi|229347379|gb|EEO12339.1| exodeoxyribonuclease I [Vibrio cholerae TMA 21]
          Length = 478

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 10  QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 70  GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 189

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 249

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 310 PILAPAKTLTSENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 369

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 370 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 429

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 430 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 477


>gi|153826959|ref|ZP_01979626.1| exodeoxyribonuclease I [Vibrio cholerae MZO-2]
 gi|149739207|gb|EDM53479.1| exodeoxyribonuclease I [Vibrio cholerae MZO-2]
          Length = 474

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQTRLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473


>gi|153829736|ref|ZP_01982403.1| exodeoxyribonuclease I [Vibrio cholerae 623-39]
 gi|262191424|ref|ZP_06049612.1| exodeoxyribonuclease I [Vibrio cholerae CT 5369-93]
 gi|148874770|gb|EDL72905.1| exodeoxyribonuclease I [Vibrio cholerae 623-39]
 gi|262032713|gb|EEY51263.1| exodeoxyribonuclease I [Vibrio cholerae CT 5369-93]
          Length = 474

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473


>gi|167623714|ref|YP_001674008.1| exonuclease I [Shewanella halifaxensis HAW-EB4]
 gi|167353736|gb|ABZ76349.1| Exodeoxyribonuclease I [Shewanella halifaxensis HAW-EB4]
          Length = 493

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 205/471 (43%), Positives = 288/471 (61%), Gaps = 7/471 (1%)

Query: 1   MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+       +DYETFG + A DRP+QFAGVR D     I   E F+CK A+DYLP PEA+
Sbjct: 26  MSEHPTIFWHDYETFGANPAKDRPSQFAGVRTDLDLNIIGEPETFYCKLANDYLPSPEAI 85

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            ITGITPQ A   G+ EAEF  +I+  FS P TC++GYN++RFDD  SR  FYRNF D Y
Sbjct: 86  LITGITPQLANLKGMPEAEFMDKINGLFSQPKTCVVGYNSLRFDDEVSRYGFYRNFIDPY 145

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              W NGN+RWD++D++RA YAF P+GI WP ++DG+ SFKL+ L +ANG+ H  AHDA 
Sbjct: 146 AREWQNGNTRWDIIDLVRACYAFRPEGINWPEKEDGSPSFKLEQLTVANGLSHEKAHDAM 205

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           +DVYAT+ +  LI+  +PKLF+Y +  R K Q+ KLID+  M PLVHVS    A    T 
Sbjct: 206 SDVYATIDMAKLIKTVQPKLFDYYFSLRQKQQVSKLIDVLEMKPLVHVSSKISALNGCTT 265

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
           +IAPVA+H   K++VI  NL+ D+    +L   ++ +R++T   +L    +P+ +K+VH+
Sbjct: 266 IIAPVAYHSTNKNAVICVNLAMDVTPLIELSVEEIRERMYTRRSDLAPDELPIGLKQVHI 325

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           NK P +   +    E+  R   D     E    L+Q   LR++  A+++  + S + D D
Sbjct: 326 NKSPFIAAANTLTDENAARLDFDKAFAREQFRKLKQHPELREKLVAVFDVEHDSKAVDPD 385

Query: 358 SQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
             LY  GFF+  D+  ++ I  T P  L+ L L F D RL E+ FRYRARN+P TL + E
Sbjct: 386 QALYSGGFFSSADKAKIEIIRNTKPSNLAALELDFDDSRLAEMLFRYRARNYPETLDDSE 445

Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           +  W E  +  L      +Y  +L++L  E + DE K+ L+ AL  YL+ +
Sbjct: 446 QYRWREFCQTRLND---PDYIIRLENLLEETEQDESKQKLLQALCHYLRNL 493


>gi|254226438|ref|ZP_04920025.1| exodeoxyribonuclease I [Vibrio cholerae V51]
 gi|125621060|gb|EAZ49407.1| exodeoxyribonuclease I [Vibrio cholerae V51]
          Length = 474

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYTGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473


>gi|153801904|ref|ZP_01956490.1| exodeoxyribonuclease I [Vibrio cholerae MZO-3]
 gi|124122549|gb|EAY41292.1| exodeoxyribonuclease I [Vibrio cholerae MZO-3]
          Length = 474

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQRGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++++    +   DVDSQ
Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQERGFNQESDVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473


>gi|297578829|ref|ZP_06940757.1| exodeoxyribonuclease I [Vibrio cholerae RC385]
 gi|297536423|gb|EFH75256.1| exodeoxyribonuclease I [Vibrio cholerae RC385]
          Length = 474

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 304/469 (64%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L  LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTGLIDIVNQTPLMHVSGMLGRERHYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473


>gi|229525835|ref|ZP_04415240.1| exodeoxyribonuclease I [Vibrio cholerae bv. albensis VL426]
 gi|229339416|gb|EEO04433.1| exodeoxyribonuclease I [Vibrio cholerae bv. albensis VL426]
          Length = 478

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 220/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 10  QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 70  GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 189

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIV 249

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   DLD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLMDLDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 310 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 369

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 370 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 429

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 430 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 477


>gi|54308882|ref|YP_129902.1| exonuclease I [Photobacterium profundum SS9]
 gi|46913312|emb|CAG20100.1| putative exonuclease I [Photobacterium profundum SS9]
          Length = 474

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 227/466 (48%), Positives = 304/466 (65%), Gaps = 3/466 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
                 DYETFG   A DR  QFAGVR D  +  I    V +CKP  DYLP PEA  ITG
Sbjct: 7   PTLYWIDYETFGATPATDRACQFAGVRTDMDFNIIGKPLVIYCKPPVDYLPSPEACLITG 66

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ+A   G+ E EF  +IH   S PNTC+IGYNN+RFDD  +R   YRNFYD Y W W
Sbjct: 67  ITPQEAQEKGLPEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYDPYAWGW 126

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWDLLD+MR  YA  P+G+ WP+ D+G  SFKL+ L++ANGIEH NAHDA ADVY
Sbjct: 127 QNGNSRWDLLDIMRTCYALRPEGVNWPNNDEGLPSFKLEHLSVANGIEHANAHDAMADVY 186

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ L  +++  +PKLF YL+D R+K +L++LIDI N+TPLVHVSGMFG    NT+ I P
Sbjct: 187 ATIELAKILKTNQPKLFNYLFDLRHKRKLQELIDIVNLTPLVHVSGMFGVGCGNTSWIVP 246

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCP 301
           +AWHP  K++VI  NL+ D     +LD+ Q+ +R++T   ELK   +P+P+K VHLNKCP
Sbjct: 247 MAWHPDNKNAVITVNLAQDPTPLIELDADQIRERMYTKRSELKPDELPIPVKLVHLNKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           +L P    K E  +R GID  +CL+NL +L++   +R++  AI+  +     + DVDS L
Sbjct: 307 VLAPAKTLKAEDADRIGIDRAQCLKNLQILKEHPEVREKLVAIFAVQREYKENTDVDSML 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  DR  +D I  + PE L+ + L   D+R+  L FRYRARNFP TL+ +E+Q W
Sbjct: 367 YDGFFSTSDRSSIDIIRESTPEALAEIKLNVEDKRIKPLLFRYRARNFPMTLNYEEQQKW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
             H +    +  +  Y    ++++ E + +E K  ++ ALY+Y+  
Sbjct: 427 KHHCQD-FFQDNLPAYMENFEAVATENQSNEHKMKILKALYDYINN 471


>gi|37526737|ref|NP_930081.1| exonuclease I [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36786169|emb|CAE15221.1| exodeoxyribonuclease I (exonuclease I) (DNA
           deoxyribophosphodiesterase) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 476

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 247/469 (52%), Positives = 326/469 (69%), Gaps = 2/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   QPTFYIHDYETFGQHPALDRPAQFAGVRTDMDFNIIEEPLVIYCSPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  GV EAEF+R+IH  FSVPN+CI+GYNNIRFDD  SRNIFYRNFYD Y +S
Sbjct: 67  GITPQIALEKGVNEAEFARQIHNAFSVPNSCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDV+RA YA  P+GI WP  ++G  SFKL+ L  ANG+EH +AHDA +DV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGIIWPENEEGLPSFKLEHLTKANGVEHSHAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++E +P++F Y +  RNK ++  LIDI  M PLVHVSGMFGA+RSN +L+A
Sbjct: 187 YATIAMAKLLKEVQPRMFNYFFQLRNKQKINALIDIPQMKPLVHVSGMFGAARSNLSLVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
           P+AWHP  +++VI C+L+GD+    +LD+  L +RL+T HDEL+    PVPIK VH+NKC
Sbjct: 247 PLAWHPANQNAVIVCDLAGDISPLLELDADALRERLYTRHDELQPDQPPVPIKLVHINKC 306

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
           PI+ P +  + E  ER G+D   C  NL +L+    +R++   ++ +      S +VD++
Sbjct: 307 PIVAPDNTLRTEDAERIGLDRDYCGRNLAILQNNPQIREKVVELFAEAEPFPESNNVDTK 366

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+  D+  M+ I  T P+ L  L+L F D R+  L FRYRARN+P TL+  E+Q 
Sbjct: 367 LYDGFFSSADKAAMNIIRETLPQNLPALDLTFQDSRIKTLLFRYRARNYPTTLTYDEQQH 426

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           WL HR+++ T+ ++ EY   ++ L  EY+G+E K   + AL EY   + 
Sbjct: 427 WLRHRQEIFTQDKLSEYFFIIEQLFTEYQGNEEKCRQLKALMEYAVQLA 475


>gi|229521349|ref|ZP_04410768.1| exodeoxyribonuclease I [Vibrio cholerae TM 11079-80]
 gi|229341447|gb|EEO06450.1| exodeoxyribonuclease I [Vibrio cholerae TM 11079-80]
          Length = 478

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 10  QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 70  GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 189

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 249

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 310 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 369

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 370 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 429

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 430 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 477


>gi|153212250|ref|ZP_01948038.1| exodeoxyribonuclease I [Vibrio cholerae 1587]
 gi|124116628|gb|EAY35448.1| exodeoxyribonuclease I [Vibrio cholerae 1587]
          Length = 474

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 218/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +L++  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELNAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473


>gi|212635816|ref|YP_002312341.1| exonuclease I [Shewanella piezotolerans WP3]
 gi|212557300|gb|ACJ29754.1| Exodeoxyribonuclease I [Shewanella piezotolerans WP3]
          Length = 470

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 207/468 (44%), Positives = 291/468 (62%), Gaps = 5/468 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N    +DYETFG + A DRP+QFAGVR D +   I+    F+CK A+DYLP PEA+ IT
Sbjct: 6   QNTLFWHDYETFGANPAKDRPSQFAGVRTDMELNIIDEPVTFYCKLANDYLPSPEAILIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A + G  EAEF  ++HQ FS  NTC++GYN+IRFDD  SR  FYRNF+D Y   
Sbjct: 66  GITPQLANQKGTPEAEFMAKVHQQFSQENTCVVGYNSIRFDDEVSRYGFYRNFFDPYARE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD++D++RA YAF PDGI WP ++DG+ SFKL+ L +ANG+ H  AHDA +DV
Sbjct: 126 WQNGNSRWDIIDLVRACYAFRPDGINWPQKEDGSPSFKLEQLTVANGLSHEKAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ +  LI+  +PKLF+Y +  R K ++ KLID+  M PLVHVS    A    T LIA
Sbjct: 186 YATIGMAKLIKSVQPKLFDYYFSLRKKQEVSKLIDVLAMKPLVHVSSKISALNGCTTLIA 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+A+H   K++VI  NL+ D+    +L + Q+ +R++T  ++L +  +P+ +K++H+NK 
Sbjct: 246 PLAYHSTNKNAVICVNLAMDVTPLIELTAEQIRERMYTRREDLAEDELPIGLKQIHINKS 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P L        ++  R  ID     E    LR    +R++  A+++        D D QL
Sbjct: 306 PFLAGAKTLTDDNAARLDIDKAFAREQYKKLRLHPEIREKLVAVFDLQSDREIADPDLQL 365

Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+  D+  M+ I  T P  L+ L L F D RLPE+ FRYRARN+P TL++ E   
Sbjct: 366 YSGGFFSQADKAKMEMIRNTKPMNLAALELTFDDERLPEMLFRYRARNYPETLNDSELLR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W E  +  L      +Y  +L+++  E + +E K+ L+ AL  YL+ +
Sbjct: 426 WREFCQPRLND---PDYMIRLENIIEETEQNESKQKLLQALCHYLRSI 470


>gi|269102608|ref|ZP_06155305.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162506|gb|EEZ41002.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 473

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 226/467 (48%), Positives = 305/467 (65%), Gaps = 3/467 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
                 DYETFG   A DRP QFAG+R D     I    V +CKP  DYLP PEA  ITG
Sbjct: 7   PSLYWIDYETFGASPATDRPCQFAGIRTDMDLNIIGEPLVIYCKPPHDYLPSPEACLITG 66

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ+A   G+ E EF  RIH+  S PNTC++GYNN+RFDD  +R   YRNFYD Y WSW
Sbjct: 67  ITPQEANEKGLSEPEFIARIHEELSKPNTCVVGYNNVRFDDEVTRYTLYRNFYDPYGWSW 126

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             GNSRWDLLD+MR  YA  PDGI WP+ D+G  SFKL+ L++ANGIEH NAHDA ADVY
Sbjct: 127 QQGNSRWDLLDIMRTCYALRPDGINWPTDDEGLPSFKLEKLSVANGIEHSNAHDAMADVY 186

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  L+++ +PKLF+YL++ R+KN+L++LID+ N+TPLVHV+GMFG    NT+ I P
Sbjct: 187 ATIEMAKLVKQNQPKLFDYLFNNRHKNKLQQLIDVVNLTPLVHVTGMFGTVCGNTSWIVP 246

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           +AWHP  K++VI  NL+ D     +LDS  +  RL+T   +L    +P+P+KEVHLNKCP
Sbjct: 247 IAWHPDNKNAVITINLAQDPTPLIELDSETIRTRLYTKRADLAADELPIPLKEVHLNKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
           IL P         +R  ID ++CL+NL L++Q   +R++   +++ K    +  +VD+ L
Sbjct: 307 ILAPAKTLTANDADRLDIDREQCLKNLALIKQHPEIREKVLEVFSVKREFDNHDNVDAML 366

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  DR  MD I  TAPE+L+ L L  +D+R+  L FRYRARNFP TLS +E+  W
Sbjct: 367 YDGFFSHADRVAMDIIRETAPEELANLQLEVADKRIKPLLFRYRARNFPMTLSYEEQTRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
             H +     + I  Y    + ++ + + DE K  +++ L +Y+  +
Sbjct: 427 KHHCQDYF-EANIPRYMENFEQVALDNQSDENKMAILHKLGQYISTL 472


>gi|254291686|ref|ZP_04962473.1| exodeoxyribonuclease I [Vibrio cholerae AM-19226]
 gi|150422370|gb|EDN14330.1| exodeoxyribonuclease I [Vibrio cholerae AM-19226]
          Length = 474

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRDRHYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLEGYLLNLENLVHEHQADPKKIAILKSVYHYVEKLA 473


>gi|229505177|ref|ZP_04394687.1| exodeoxyribonuclease I [Vibrio cholerae BX 330286]
 gi|229511152|ref|ZP_04400631.1| exodeoxyribonuclease I [Vibrio cholerae B33]
 gi|229518270|ref|ZP_04407714.1| exodeoxyribonuclease I [Vibrio cholerae RC9]
 gi|229608197|ref|YP_002878845.1| exonuclease I [Vibrio cholerae MJ-1236]
 gi|229344985|gb|EEO09959.1| exodeoxyribonuclease I [Vibrio cholerae RC9]
 gi|229351117|gb|EEO16058.1| exodeoxyribonuclease I [Vibrio cholerae B33]
 gi|229357400|gb|EEO22317.1| exodeoxyribonuclease I [Vibrio cholerae BX 330286]
 gi|229370852|gb|ACQ61275.1| exodeoxyribonuclease I [Vibrio cholerae MJ-1236]
          Length = 478

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 10  QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 70  GITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 189

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 249

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 310 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 369

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 370 LYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDTEQRR 429

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 430 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 477


>gi|147788|gb|AAA19938.1| exonuclease I [Escherichia coli]
          Length = 466

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 240/475 (50%), Positives = 322/475 (67%), Gaps = 16/475 (3%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RNIFYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           HDA ADVYAT+A+  L++ ++P+LF+YL+          LID+ +M PLVHVSGMFGA R
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLF---------ALIDVPHMKPLVHVSGMFGAWR 231

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K 
Sbjct: 232 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 291

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSS 353
           VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+    R++  AI+ +    + S
Sbjct: 292 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQEREKVVAIFAEAEPFTPS 351

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +VD+QLY+GFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL 
Sbjct: 352 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 411

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+Q WLEHR+++ T   ++ Y ++LQ L  +Y  D+ K  L+ AL++Y + + 
Sbjct: 412 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIA 466


>gi|229529683|ref|ZP_04419073.1| exodeoxyribonuclease I [Vibrio cholerae 12129(1)]
 gi|229333457|gb|EEN98943.1| exodeoxyribonuclease I [Vibrio cholerae 12129(1)]
          Length = 478

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 218/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 10  QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 70  GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ +++ANGIEH NAHDA ADV
Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHISVANGIEHSNAHDAMADV 189

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 249

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 310 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQDSDVDSQ 369

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 370 LYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 429

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 430 WAAHCRDYF-ERNLEGYMVNLENLVHEHQADPKKMAILKSVYHYVEKLA 477


>gi|15641247|ref|NP_230879.1| exonuclease I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591211|ref|ZP_01678513.1| exodeoxyribonuclease I [Vibrio cholerae 2740-80]
 gi|121728822|ref|ZP_01681834.1| exodeoxyribonuclease I [Vibrio cholerae V52]
 gi|147674379|ref|YP_001216801.1| exonuclease I [Vibrio cholerae O395]
 gi|153819174|ref|ZP_01971841.1| exodeoxyribonuclease I [Vibrio cholerae NCTC 8457]
 gi|153823017|ref|ZP_01975684.1| exodeoxyribonuclease I [Vibrio cholerae B33]
 gi|227081406|ref|YP_002809957.1| exodeoxyribonuclease I [Vibrio cholerae M66-2]
 gi|254848359|ref|ZP_05237709.1| exonuclease I [Vibrio cholerae MO10]
 gi|255745633|ref|ZP_05419581.1| exodeoxyribonuclease I [Vibrio cholera CIRS 101]
 gi|262159091|ref|ZP_06030203.1| exodeoxyribonuclease I [Vibrio cholerae INDRE 91/1]
 gi|262169449|ref|ZP_06037141.1| exodeoxyribonuclease I [Vibrio cholerae RC27]
 gi|298498672|ref|ZP_07008479.1| exonuclease I [Vibrio cholerae MAK 757]
 gi|9655715|gb|AAF94393.1| exodeoxyribonuclease I [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121546936|gb|EAX57085.1| exodeoxyribonuclease I [Vibrio cholerae 2740-80]
 gi|121628910|gb|EAX61366.1| exodeoxyribonuclease I [Vibrio cholerae V52]
 gi|126510260|gb|EAZ72854.1| exodeoxyribonuclease I [Vibrio cholerae NCTC 8457]
 gi|126519445|gb|EAZ76668.1| exodeoxyribonuclease I [Vibrio cholerae B33]
 gi|146316262|gb|ABQ20801.1| exodeoxyribonuclease I [Vibrio cholerae O395]
 gi|227009294|gb|ACP05506.1| exodeoxyribonuclease I [Vibrio cholerae M66-2]
 gi|227013151|gb|ACP09361.1| exodeoxyribonuclease I [Vibrio cholerae O395]
 gi|254844064|gb|EET22478.1| exonuclease I [Vibrio cholerae MO10]
 gi|255736708|gb|EET92105.1| exodeoxyribonuclease I [Vibrio cholera CIRS 101]
 gi|262022262|gb|EEY40971.1| exodeoxyribonuclease I [Vibrio cholerae RC27]
 gi|262029276|gb|EEY47928.1| exodeoxyribonuclease I [Vibrio cholerae INDRE 91/1]
 gi|297543005|gb|EFH79055.1| exonuclease I [Vibrio cholerae MAK 757]
          Length = 474

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 305/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PKLF+Y +  R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++   ++  +   +   DVDSQ
Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF+  DR  M+ I  TAPE L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDTEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473


>gi|293395284|ref|ZP_06639569.1| exodeoxyribonuclease I [Serratia odorifera DSM 4582]
 gi|291422241|gb|EFE95485.1| exodeoxyribonuclease I [Serratia odorifera DSM 4582]
          Length = 453

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 243/451 (53%), Positives = 326/451 (72%), Gaps = 2/451 (0%)

Query: 20  DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
           DRPAQFAGVR D  +  IE   V +C PADDYLPDPEAV ITGITPQ+AL  GV EAEF+
Sbjct: 2   DRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPDPEAVMITGITPQEALAKGVCEAEFA 61

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           R+IHQ FSVP TCI+GYNNIRFDD  SRNIFYR+FYD Y +SW NGNSRWDLLDVMRA Y
Sbjct: 62  RQIHQAFSVPGTCIVGYNNIRFDDEVSRNIFYRSFYDPYAYSWQNGNSRWDLLDVMRACY 121

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
           A  P+GI WP  DDG  SF+L+ L  ANG+ H  AHDA +DV+AT+A+  L+R+ +P+LF
Sbjct: 122 ALRPEGIVWPENDDGFPSFRLEHLTRANGVAHEQAHDAMSDVHATIAMAKLVRQAQPRLF 181

Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLS 259
           +YL  +RNK++L  L+DI  MTPLVHVSGMFGA+RSNT+ +AP+AWHP  K+++I C+L+
Sbjct: 182 DYLLQHRNKHKLNALVDIAEMTPLVHVSGMFGAARSNTSWVAPLAWHPDNKNALIVCDLA 241

Query: 260 GDMRVFQDLDSVQLAKRLFTSHDELKGLVPV-PIKEVHLNKCPILMPIDYCKKEHFERWG 318
           GDM    +LD+ QL +RL+T  D L    P  PIK VH+NKCP+L P      E+ +R G
Sbjct: 242 GDMTPLLELDADQLRERLYTRRDRLSADRPPVPIKLVHINKCPVLAPAKTLLPENADRLG 301

Query: 319 IDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQIMDRIL 377
           ID + CL NL +LRQ   +R++  A+Y      ++S DVD++LYDGFF+D D+  M  I 
Sbjct: 302 IDRQACLNNLQILRQHPQVREKVVALYADAEPFAASDDVDARLYDGFFSDADKAAMKIIQ 361

Query: 378 RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYK 437
           +T P+ L  L+L F+D R+ EL FR+RARN+P+TL + E++ WL+HR+  L+  +++ Y 
Sbjct: 362 QTKPQNLPALDLTFNDDRMQELLFRFRARNYPNTLDDGEQRRWLQHRQTALSAEKVQSYV 421

Query: 438 NKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            +L++L   ++ D  K  L+ +L++Y + ++
Sbjct: 422 LQLEALYNLHEADSAKLALLKSLFDYGKQLV 452


>gi|217973824|ref|YP_002358575.1| exonuclease I [Shewanella baltica OS223]
 gi|217498959|gb|ACK47152.1| Exodeoxyribonuclease I [Shewanella baltica OS223]
          Length = 470

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 210/468 (44%), Positives = 288/468 (61%), Gaps = 5/468 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 +DYETFG + A DRP+QFAG+R D     I   E F+CK   DYLP PEA+ IT
Sbjct: 6   QPSIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQTPDYLPSPEAILIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ E EF  RI   FS PNTC+ GYN++RFDD  +R  FYRNF D Y   
Sbjct: 66  GITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L  ANG+ H  AHDA +DV
Sbjct: 126 WQNGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  LIREK+PKL++Y +D R K  +   ID+ NM PLVHVS    A    T LI+
Sbjct: 186 YATIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLIS 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVA HP  K++VI  NL+ D+    +LD  Q+  R++T   +L +  +P+ +K++HLNKC
Sbjct: 246 PVAHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P +        EH  R GID +   E    L+    LR++   ++    + ++ D D  L
Sbjct: 306 PFITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLML 365

Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+  D+  M+ I  T P+ L+ L+L F D R+PE+ FRYRARN+P  L  +E Q 
Sbjct: 366 YSGGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W E  +  L     ++Y  KL++L  + + DE K+ L+ AL  YL+ +
Sbjct: 426 WREFCQSRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLREL 470


>gi|117921013|ref|YP_870205.1| exonuclease I [Shewanella sp. ANA-3]
 gi|117613345|gb|ABK48799.1| Exodeoxyribonuclease I subunit C [Shewanella sp. ANA-3]
          Length = 470

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 210/468 (44%), Positives = 289/468 (61%), Gaps = 5/468 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 +DYETFG + A DRPAQFAG+R D     I   E F+CK + DYLP PEA+ IT
Sbjct: 6   QPSIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ E EF  RIH  FS PNTC+ GYN++RFDD  +R  FYRNF D Y   
Sbjct: 66  GITPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGN+RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L  ANG+ H  AHDA +DV
Sbjct: 126 WQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  LI+EK+PKL++Y ++ R K  +   ID+ NM PL HVS    A +  T LIA
Sbjct: 186 YATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIA 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVA HP  K+++I  NL+ D+    +LD  Q+  R++T   EL    +P+P+K+VHLNKC
Sbjct: 246 PVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAADELPIPVKQVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P +           ER  ID     E    L+    LR++   ++      ++ D D  L
Sbjct: 306 PFITSAKILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLML 365

Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+  D+  M+ I  T P+ L+ L+L F D R+PE+ FRYRARN+P  L+++E Q 
Sbjct: 366 YSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEAQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W    ++ L+    ++Y  KL++L  + +GDE K+ L+ AL  YL+ +
Sbjct: 426 WRTFCQQRLSD---QDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL 470


>gi|126173926|ref|YP_001050075.1| exonuclease I [Shewanella baltica OS155]
 gi|125997131|gb|ABN61206.1| Exodeoxyribonuclease I subunit C [Shewanella baltica OS155]
          Length = 472

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 211/466 (45%), Positives = 289/466 (62%), Gaps = 5/466 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               +DYETFG + A DRP+QFAG+R D     I   E F+CK A DYLP PEA+ ITGI
Sbjct: 10  SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A   G+ E EF  RI   FS PNTC+ GYN++RFDD  +R  FYRNF D Y   W 
Sbjct: 70  TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L  ANG+ H  AHDA +DVYA
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LIREK+PKL++Y +D R K  +   ID+ NM PLVHVS    A    T LI+PV
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           A HP  K++VI  NL+ D+    +LD  Q+  R++T   +L +  +P+ +K++HLNKCP 
Sbjct: 250 AHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +        EH  R GID +   E    L+    LR++   ++    + ++ D D  LY 
Sbjct: 310 ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLYS 369

Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
            GFF+  D+  M+ I  T P+ L+ L+L F D R+PE+ FRYRARN+P  L  +E Q W 
Sbjct: 370 GGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWR 429

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           E  +  L     ++Y  KL++L  + + DE K+ L+ AL  YL+ +
Sbjct: 430 EFCQSRLAD---QDYVLKLENLLQDTQVDETKQKLLAALCHYLREL 472


>gi|89074290|ref|ZP_01160780.1| putative exonuclease I [Photobacterium sp. SKA34]
 gi|89049994|gb|EAR55528.1| putative exonuclease I [Photobacterium sp. SKA34]
          Length = 473

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 228/467 (48%), Positives = 308/467 (65%), Gaps = 3/467 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
                DYETFG   A DRP QFAGVR D     I    V +CKP  DYLP PEA  ITGI
Sbjct: 8   TLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+A+  G+ E EF   IH   S PNTC+IGYNN+RFDD  +R   YRNF+D Y W+W 
Sbjct: 68  TPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAWQ 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD+MR  YA  P+GI WP  D+   SFKL+ L++ANGIEH NAHDA ADVYA
Sbjct: 128 NGNSRWDLLDIMRTCYALRPEGINWPLDDEDRPSFKLEKLSVANGIEHANAHDAMADVYA 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+ L  +I+  +PKLF+YL+D R+K +L++LIDI N+TPLVH+SGMFG    NT+ I P+
Sbjct: 188 TIELAKIIKTNQPKLFDYLFDLRHKRKLQELIDIVNLTPLVHISGMFGTDCGNTSWIVPM 247

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHP  K++VI  NL+ D     +L++ QL  RL+T   +L    +PVP+KEVHLNKCP+
Sbjct: 248 AWHPDNKNTVITVNLALDPTPLIELNADQLRNRLYTKRVDLAPDELPVPVKEVHLNKCPV 307

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
           L P    K E   R GID ++CL+NL L++Q   +R++   + + K   +++ +VD+ LY
Sbjct: 308 LAPAKTLKAEDAARLGIDREQCLKNLALIKQHPEIREKLIEMVSVKREYAANDNVDAMLY 367

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGFF+  DR  MD I  T P+QL++L +   D+R+  L FRYRARNFP TLS +E+  W 
Sbjct: 368 DGFFSTADRSTMDIIRETTPDQLASLEINVDDKRIKPLLFRYRARNFPMTLSYEEQVRWK 427

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            H +       + +Y    ++++ E++ DE K  ++ +LY+Y+  ++
Sbjct: 428 HHCQD-FFEMNMTKYMENFEAVAYEHESDESKMKVLQSLYDYVSKLV 473


>gi|262402419|ref|ZP_06078980.1| exodeoxyribonuclease I [Vibrio sp. RC586]
 gi|262351201|gb|EEZ00334.1| exodeoxyribonuclease I [Vibrio sp. RC586]
          Length = 474

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 220/469 (46%), Positives = 308/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA YA  P+GI+WP  D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVIRACYALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   I+  +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   DLD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIMVDLGKDPQPLLDLDADALQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ E+ GID ++CL +L ++RQ   +R++   ++  +   +   +VDSQ
Sbjct: 306 PILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+  DR  M+ I  T+P+ L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYEGFFSPADRAAMEIIRTTSPDNLGSLEIKVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ DE K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473


>gi|153000207|ref|YP_001365888.1| exonuclease I [Shewanella baltica OS185]
 gi|151364825|gb|ABS07825.1| Exodeoxyribonuclease I [Shewanella baltica OS185]
          Length = 472

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 211/466 (45%), Positives = 288/466 (61%), Gaps = 5/466 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               +DYETFG + A DRP+QFAG+R D     I   E F+CK A DYLP PEA+ ITGI
Sbjct: 10  SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A   G+ E EF  RI   FS PNTC+ GYN++RFDD  +R  FYRNF D Y   W 
Sbjct: 70  TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYVREWQ 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L  ANG+ H  AHDA +DVYA
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LIREK+PKL++Y +D R K  +   ID+ NM PLVHVS    A    T LI+PV
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           A HP  K++VI  NL+ D+    +LD  Q+  R++T   +L +  +P+ +K++HLNKCP 
Sbjct: 250 AHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +        EH  R GID     E    L+    LR++   ++    + ++ D D  LY 
Sbjct: 310 ITSAKILSDEHAARLGIDKAFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLYS 369

Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
            GFF+  D+  M+ I  T P+ L+ L+L F D R+PE+ FRYRARN+P  L  +E Q W 
Sbjct: 370 GGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWR 429

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           E  +  L     ++Y  KL++L  + + DE K+ L+ AL  YL+ +
Sbjct: 430 EFCQSRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLREL 472


>gi|307825107|ref|ZP_07655328.1| Exodeoxyribonuclease I [Methylobacter tundripaludum SV96]
 gi|307733855|gb|EFO04711.1| Exodeoxyribonuclease I [Methylobacter tundripaludum SV96]
          Length = 501

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 190/472 (40%), Positives = 278/472 (58%), Gaps = 12/472 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  F  +DYETFG D   D+P QFAG+R D  +  ++   V +CKPA+D LP PEA  IT
Sbjct: 4   TQTFYWHDYETFGTDPQRDKPVQFAGIRTDFDFNVVDDPLVVYCKPAEDCLPHPEACLIT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A + GV EAEF R IH+  + PNTC +GYN++RFDD  +RN  YRNFYD Y   
Sbjct: 64  GITPQLAEQKGVCEAEFIRLIHEQLAQPNTCTLGYNSLRFDDEVTRNCLYRNFYDPYARE 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDL+DV+RA  A  PDGI WP  ++G  SF+L  L   N I H  AHDA +DV
Sbjct: 124 WQNGNSRWDLIDVVRATRALRPDGIVWPVNEEGGPSFRLDQLTRVNNIAHEAAHDALSDV 183

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YATLA+  L+++ +PKL+++L  +R K +   L+ + +  P+VHVSG + A ++  A++ 
Sbjct: 184 YATLAITKLVKQAQPKLYQFLLRHRVKGEALNLLQLGSFKPVVHVSGKYPAVKNCLAVVL 243

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+  HP   + +I  +LS D      L   ++ +R+FT+  +L +G+  +P+K VH+NKC
Sbjct: 244 PICKHPTNANGIIVYDLSVDPEPMLGLAVEEIQQRIFTATADLPEGVARIPLKTVHINKC 303

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT--SSSQDVDS 358
           P+L P+   + E  +R  ID   C  N+  ++    L +   A+++        S     
Sbjct: 304 PVLAPVSVIRPEDAQRLEIDLALCHANIDKIKAAVGLSENLAAVFSGQAYVVQDSDPDLE 363

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
               GFF++ D++ M +I    PEQL+     F+D RL E+ FRYRARN+P TL+  E +
Sbjct: 364 IYSGGFFSENDKKQMIKIRSMQPEQLTKSVFKFTDSRLSEMLFRYRARNYPETLNTDELR 423

Query: 419 DWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
            W E     LT  +      +++Y ++L  LS +   +     +I+AL +Y 
Sbjct: 424 RWNEFCVNRLTGRQAGGGIVLDDYFSRLAELSRDENKNT---KIIDALEDYA 472


>gi|304409797|ref|ZP_07391417.1| Exodeoxyribonuclease I [Shewanella baltica OS183]
 gi|307304154|ref|ZP_07583907.1| Exodeoxyribonuclease I [Shewanella baltica BA175]
 gi|304352315|gb|EFM16713.1| Exodeoxyribonuclease I [Shewanella baltica OS183]
 gi|306913052|gb|EFN43475.1| Exodeoxyribonuclease I [Shewanella baltica BA175]
          Length = 472

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 211/466 (45%), Positives = 289/466 (62%), Gaps = 5/466 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               +DYETFG + A DRP+QFAG+R D     I   E F+CK A DYLP PEA+ ITGI
Sbjct: 10  SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A   G+ E EF  RI   FS PNTC+ GYN++RFDD  +R  FYRNF D Y   W 
Sbjct: 70  TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L  ANG+ H  AHDA +DVYA
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTHANGLSHEKAHDAMSDVYA 189

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LIREK+PKL++Y +D R K  +   ID+ NM PLVHVS    A    T LI+PV
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           A HP  K++VI  NL+ D+    +LD  Q+  R++T   +L +  +P+ +K++HLNKCP 
Sbjct: 250 AHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +        EH  R GID +   E    L+    LR++   ++    + ++ D D  LY 
Sbjct: 310 ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRTTIDPDLMLYS 369

Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
            GFF+  D+  M+ I  T P+ L+ L+L F D R+PE+ FRYRARN+P  L  +E Q W 
Sbjct: 370 GGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWR 429

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           E  +  L     ++Y  KL++L  + + DE K+ L+ AL  YL+ +
Sbjct: 430 EFCQNRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLREL 472


>gi|160874834|ref|YP_001554150.1| exonuclease I [Shewanella baltica OS195]
 gi|160860356|gb|ABX48890.1| Exodeoxyribonuclease I [Shewanella baltica OS195]
 gi|315267073|gb|ADT93926.1| Exodeoxyribonuclease I [Shewanella baltica OS678]
          Length = 472

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 211/466 (45%), Positives = 288/466 (61%), Gaps = 5/466 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               +DYETFG + A DRP+QFAG+R D     I   E F+CK A DYLP PEA+ ITGI
Sbjct: 10  SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A   GV E EF  RI   FS PNTC+ GYN++RFDD  +R  FYRNF D Y   W 
Sbjct: 70  TPQLANLKGVPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L  ANG+ H  AHDA +DVYA
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LIREK+PKL++Y +D R K  +   ID+ NM PLVHVS    A    T LI+ V
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISTV 249

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           A HP  K++VI  NL+ D+    +LD  Q+  R++T   +L +  +P+ +K++HLNKCP 
Sbjct: 250 AHHPNNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +        EH  R GID +   E    L+    LR++   ++    + ++ D D  LY 
Sbjct: 310 ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLYS 369

Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
            GFF+  D+  M+ I  T P+ L+ L+L F D R+PE+ FRYRARN+P  L  +E Q W 
Sbjct: 370 GGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWR 429

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           E  +  L     ++Y  KL++L  + + DE K+ L+ AL  YL+ +
Sbjct: 430 EFCQNRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLREL 472


>gi|330720654|gb|EGG98904.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC2047]
          Length = 478

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 203/472 (43%), Positives = 292/472 (61%), Gaps = 8/472 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F  YD+ETFG D   DRP QFAG+R D Q+  I   +VFFCKPADD LP PEA  ITGI
Sbjct: 2   SFYWYDFETFGADPFRDRPCQFAGIRTDEQFNIIGDPDVFFCKPADDVLPHPEACLITGI 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+AL++GV EAEF  RIH+ F+ P TC+ GYN+IRFDD  +RN  YRNFYD Y   W 
Sbjct: 62  TPQQALKEGVSEAEFIARIHEQFAEPGTCVAGYNSIRFDDEVTRNALYRNFYDPYAREWQ 121

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +GNSRWD++D++R   A  P+GI WP  +DG+ SFKL+ L  ANGI H  AHDA +DV+A
Sbjct: 122 HGNSRWDIIDMVRLTRALRPEGINWPEHEDGSPSFKLEQLTAANGISHEAAHDALSDVWA 181

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+ L  LI+ K+PKL++Y+Y +R+K  + + +++    P++H+S MF A R   A++ P+
Sbjct: 182 TIELAKLIKTKQPKLYDYVYKHRDKRLVDQQLNVVAQKPVLHISSMFPADRGCAAIVVPL 241

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           A     K++V   +LS D      L + Q+A+R+FT  +++ +G+  VPIK VH+NKCPI
Sbjct: 242 ARDVVNKNAVYVYDLSVDPEPLLRLSAEQIAERIFTRREDMPEGVERVPIKAVHINKCPI 301

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P++    E  ER GID   C  NL  ++    + ++ +A+++     +  D D  LY 
Sbjct: 302 VAPVNVVSAEAAERLGIDLTACRANLEHIKAAAGIAEKVQAVFSSREFETPDDPDQALYS 361

Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
            GFF+  DRQ+M+ + +  PEQLS   LPF D RLP++ FRYRARN+P TLS+ E+  W 
Sbjct: 362 GGFFSSHDRQLMEELRQMTPEQLSAAKLPFRDARLPDMLFRYRARNYPATLSDDERAQWQ 421

Query: 422 EHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
             R+             ++ Y  ++  L    +    ++ ++  L  Y   +
Sbjct: 422 VFRRSCFDDEKIGSRLTLDSYYQRIDELMNAPQTTLEQKQILIQLQAYGVSL 473


>gi|258620230|ref|ZP_05715269.1| exodeoxyribonuclease I [Vibrio mimicus VM573]
 gi|258587588|gb|EEW12298.1| exodeoxyribonuclease I [Vibrio mimicus VM573]
          Length = 474

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 309/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSLGLSEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   I+  +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   DLD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ E+ GID ++CL +L ++RQ   +R++   ++  +   +   +VDSQ
Sbjct: 306 PILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+  DR  M+ I  T+P+ L +L++  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ DE K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473


>gi|258624410|ref|ZP_05719357.1| exodeoxyribonuclease I [Vibrio mimicus VM603]
 gi|258583257|gb|EEW08059.1| exodeoxyribonuclease I [Vibrio mimicus VM603]
          Length = 474

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 218/469 (46%), Positives = 309/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  D+G TSFKL+ L++ANGIEH NAH+A ADV
Sbjct: 126 WQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHNAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   I+  +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   DLD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ E+ GID ++CL +L ++RQ   +R++   ++  +   +   +VDSQ
Sbjct: 306 PILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+  DR  M+ I  T+P+ L +L++  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ DE K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473


>gi|262165491|ref|ZP_06033228.1| exodeoxyribonuclease I [Vibrio mimicus VM223]
 gi|262025207|gb|EEY43875.1| exodeoxyribonuclease I [Vibrio mimicus VM223]
          Length = 474

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 306/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   I+  +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   DLD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR-FKAIYNKPYTSSSQDVDSQ 359
           PIL P      E+ E+ GID ++CL +L ++RQ   +R++       +   +   +VDSQ
Sbjct: 306 PILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVSVFSQEREFAKENNVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+  DR  M+ I  T+P+ L +L +  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYEGFFSPADRAAMEIIRTTSPDNLGSLEIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ DE K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473


>gi|124266553|ref|YP_001020557.1| exonuclease I [Methylibium petroleiphilum PM1]
 gi|124259328|gb|ABM94322.1| Exodeoxyribonuclease I subunit C [Methylibium petroleiphilum PM1]
          Length = 479

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 186/478 (38%), Positives = 271/478 (56%), Gaps = 11/478 (2%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   F  +DYETFGR    DRPAQFAGVR D +  +I    + +C+PA D+LPDPE+  
Sbjct: 1   MSEHSFYWHDYETFGRWPRRDRPAQFAGVRTDAELNEIGPPLMHYCQPAPDFLPDPESCL 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI PQ  L  G+ E  F+  I +  + P T  +GYN IRFDD  +R++F+RN  D Y 
Sbjct: 61  LTGILPQTCLEQGLPEHAFAAAIERELAAPGTVGVGYNTIRFDDEVTRHLFWRNLMDPYA 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             W NG  RWDLLDV+R  YA  P+GI+WP  +DG  SFKL+ L  ANG+ H  AHDA +
Sbjct: 121 REWQNGCGRWDLLDVVRCTYALRPEGIEWPRHEDGRASFKLEHLTAANGLAHEAAHDALS 180

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DV AT+ L  LIR  +P+L+++ +    K+ +   I      P +H+SGM+ A R   A 
Sbjct: 181 DVRATIGLARLIRRHQPRLWDFCFRLHRKDAVMAEIGAGARRPFLHISGMYPAERGCLAA 240

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
           + P+  HP  K+ +I  +L+ D      LD+  + +RLFT  ++L +G   +PIK +H+N
Sbjct: 241 VWPLGAHPTNKNELIVWDLAADPSELYGLDAAAIRQRLFTKAEDLPEGTTRLPIKSIHIN 300

Query: 299 KCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDV 356
           K PI++  +        ERWG D  R   +  +      L R  +  ++ +P    + DV
Sbjct: 301 KSPIVIGNLKTLSPAMAERWGYDAARVQRHADIALAHDALPRALWADVFARPAPEQAPDV 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D  LY GF ++ DR+ ++R+    PE L+     F D RL EL FRYRARNFP TL  +E
Sbjct: 361 DEDLYGGFVSNADRRTLERLRGLPPEGLAGQRPSFEDGRLEELLFRYRARNFPDTLDAEE 420

Query: 417 KQDWLEHRKKMLT-----RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           +  W +HR + L       S +  +  ++ +LS     DE  + ++ ALY+Y + + P
Sbjct: 421 RAQWEQHRAERLHLGVGGGSSLAAFFERIDALSE--SADERGQDILGALYDYAEQIAP 476


>gi|197263773|ref|ZP_03163847.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242028|gb|EDY24648.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 476

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 247/468 (52%), Positives = 333/468 (71%), Gaps = 1/468 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QL
Sbjct: 309 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQL 368

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 369 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++LT   +++Y N+LQ LS +Y  D+ K GL+  L++Y   ++
Sbjct: 429 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKLLWQYATEIV 476


>gi|254362095|ref|ZP_04978217.1| exodeoxyribonuclease I [Mannheimia haemolytica PHL213]
 gi|153093654|gb|EDN74613.1| exodeoxyribonuclease I [Mannheimia haemolytica PHL213]
          Length = 515

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 221/476 (46%), Positives = 300/476 (63%), Gaps = 6/476 (1%)

Query: 1   MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M++ F    YDYE+FG   ALDRPAQFAG+R D  +  I    +FFCK   DYLP PEAV
Sbjct: 1   MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+   +GV E EF+ RIH  FS  NTC IGYNNIR+DD  +R  F+RNFYD Y
Sbjct: 61  MVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  PDGI+WP+ + G  SFKL++L  ANGI H NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           +DVYAT+A+  LI++K+PKLF++ ++ R+K ++ KLID   MTPLVHVSGM G  R NTA
Sbjct: 181 SDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
            + P+AWH   +++VI C+LSGDM      ++  L +RL+T  DEL +  +PVP+K VH+
Sbjct: 241 WVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELPVPLKLVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355
           NKCPIL P      E+ ER GID   CLENL  L+ Q         +    +     S +
Sbjct: 301 NKCPILAPAKTLLPENAERLGIDRALCLENLKTLKAQKSLIREKVIEIFNEERTFEPSTN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V++ LYDGFF+  D+  M  +    PE L+   L F D R+  L F YRAR++P TLS  
Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
           E+  W +H  + +  ++  ++   +  L  ++  +  K  L+  L  Y + +  ++
Sbjct: 421 EQIKWQKHCNQQI-EAKAAQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQISQQQ 475


>gi|261211043|ref|ZP_05925333.1| exodeoxyribonuclease I [Vibrio sp. RC341]
 gi|260840018|gb|EEX66618.1| exodeoxyribonuclease I [Vibrio sp. RC341]
          Length = 474

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 216/469 (46%), Positives = 303/469 (64%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP PEA  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDIDFNIIGEPLVIYCQLPNDYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S P T  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSLGLPEPEFIARIHAELSTPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+G++WP  +DG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVIRACHALRPEGMKWPENEDGFTSFKLERLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   I+  +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   +LD+  L  RL+T +++L    +P+P+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLLELDAEALQARLYTHYEDLAPDELPIPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR-FKAIYNKPYTSSSQDVDSQ 359
           PIL P      E+ ++ GID ++CL +L ++RQ   +R++       +   +   +VDSQ
Sbjct: 306 PILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPQIREKLVSVFSQEREFAKENNVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF+  DR  MD I  T PE L  L++  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYDGFFSPADRAAMDIIRTTEPENLGNLDIKVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ D  K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLESYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473


>gi|88859960|ref|ZP_01134599.1| exodeoxyribonuclease I [Pseudoalteromonas tunicata D2]
 gi|88817954|gb|EAR27770.1| exodeoxyribonuclease I [Pseudoalteromonas tunicata D2]
          Length = 483

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 214/472 (45%), Positives = 299/472 (63%), Gaps = 8/472 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               +D+ETFG +   DRP+QFAGVR D     I    + +C+PA DYLP P+A  ITGI
Sbjct: 12  TIYWHDFETFGANPQKDRPSQFAGVRTDFDLNIIGEPLIIYCQPAPDYLPHPQACLITGI 71

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ AL+ G++EAEF  +IHQ F+ PNTC+ GYN+IRFDD  SR  FYRNFYD Y   W 
Sbjct: 72  TPQHALKHGMIEAEFIAKIHQEFAKPNTCVAGYNSIRFDDEVSRYAFYRNFYDPYAREWQ 131

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWD++D++RA YA  P+GIQWP ++DG  SF+L+DL  ANGIEH  AHDA +DV A
Sbjct: 132 NGNSRWDIIDLVRACYALRPEGIQWPLKEDGTPSFRLEDLTKANGIEHAAAHDALSDVTA 191

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  LI++K+PKL+++ +  R K  + +L DI NM PLVH S    AS+  T  IAP+
Sbjct: 192 TIALAKLIKDKQPKLYDFFFKLRFKKAVAELFDIYNMVPLVHTSSKIPASQGCTTWIAPM 251

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           A+HP  K++VI  NL+ D R    L + ++  RL+T   EL +   P+ +K VHLNKCPI
Sbjct: 252 AFHPVNKNAVICFNLTHDPRPLLALSADEIRARLYTKRAELAENEQPIGLKLVHLNKCPI 311

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
           + P      E+  + GID ++CL NL +L+    LR++   ++  +   + S++ D QLY
Sbjct: 312 VAPAKTLLPENAAKIGIDREQCLANLAILKAHPELREKVAEVFQSENEFAGSENCDYQLY 371

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
            GF ++ D+   D I    P+QL+TL L F D++   L FRYRARN+PHTL+  E + W 
Sbjct: 372 AGFTSNADKHKFDIIRAAEPDQLATLGLDFEDKKFDTLLFRYRARNWPHTLTTAELEKWR 431

Query: 422 EHRKKMLT----RSRIE--EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ +  L        I+  E+   L++L  E +G+E    ++ ALY Y Q +
Sbjct: 432 KYCQNKLMYGEDSPAIDAQEFMMTLENLVHENEGNERNMTILKALYHYAQNL 483


>gi|262171739|ref|ZP_06039417.1| exodeoxyribonuclease I [Vibrio mimicus MB-451]
 gi|261892815|gb|EEY38801.1| exodeoxyribonuclease I [Vibrio mimicus MB-451]
          Length = 474

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 218/469 (46%), Positives = 309/469 (65%), Gaps = 3/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A DRP+QFAGVR D  +  I    V +C+  +DYLP P+A  IT
Sbjct: 6   QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPDAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA   G+ E EF  RIH   S PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  GITPQKANSLGLSEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWDLLDV+RA +A  P+GI+WP  D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   I+  +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G  R  T+ I 
Sbjct: 186 IATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L  D +   DLD+  L  RL+T +++L    +PVP+K VHLNKC
Sbjct: 246 PIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
           PIL P      E+ E+ GID ++CL +L ++RQ   +R++   ++  +   +   +VDSQ
Sbjct: 306 PILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GFF+  DR  M+ I  T+P+ L +L++  +D+R+  L FRYRAR++PHTL++ E++ 
Sbjct: 366 LYEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W  H +       +E Y   L++L  E++ DE K  ++ ++Y Y++ + 
Sbjct: 426 WAAHCRDYF-ERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473


>gi|226945876|ref|YP_002800949.1| exonuclease I [Azotobacter vinelandii DJ]
 gi|226720803|gb|ACO79974.1| Exodeoxyribonuclease I [Azotobacter vinelandii DJ]
          Length = 476

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 197/476 (41%), Positives = 281/476 (59%), Gaps = 13/476 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DRP Q AG+R D    +I +    +C+PADD LP P A  +
Sbjct: 1   MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP+     G+ EAEF  R+H   ++P TC  GYN++RFDD  SR+  YRNF+D Y  
Sbjct: 61  TGITPRLLAERGLCEAEFVTRLHAELALPGTCTAGYNSLRFDDEISRHALYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+D++R  YA  P+GI WP   +G  S +L+ L  ANGIEH  AHDA AD
Sbjct: 121 EWQAGNSRWDLIDLLRTAYALRPEGIHWPQE-EGRVSLRLERLTAANGIEHGQAHDALAD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  L+RE++PKL+ YLY  R+K ++   I +  + PLVHVSG F A R   A++
Sbjct: 180 VRATIALARLLRERQPKLYGYLYQLRSKQRVLDQIRL--LRPLVHVSGRFAAERGYLAVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D     DLD+  L +RL+   +EL     PVP+K VH+N+
Sbjct: 238 LPLAWHPSNRNALIVCDLQADPSPLLDLDAEILRRRLYMRREELADNESPVPLKLVHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT-NLRDRFKAIYNKPYTSSSQDVDS 358
           CP+L P+   ++E   R  +D   C   + LL       +++   IY      +S+D + 
Sbjct: 298 CPVLAPLSVLREEDIGRLRVDMAECQRRVELLCAAQGQWQEKLARIYMGDEFPASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLY GFF + DR++ +++ R  PE L   N  F D RLPEL FRYRARNFP TL+  E +
Sbjct: 358 QLYGGFFGERDRRLCEQVRRAEPESLGRQNWGFDDERLPELLFRYRARNFPETLTAAEGE 417

Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            W E  ++ L+ +       + ++  +L+ L  +   DE    ++ A  EY + ++
Sbjct: 418 CWQEFCRRRLSDAAWGAPCTLGDFNVQLEQLLAQA--DEEHRPILVAWREYARQLL 471


>gi|127512540|ref|YP_001093737.1| exonuclease I [Shewanella loihica PV-4]
 gi|126637835|gb|ABO23478.1| Exodeoxyribonuclease I subunit C [Shewanella loihica PV-4]
          Length = 482

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 205/467 (43%), Positives = 290/467 (62%), Gaps = 5/467 (1%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
                +DYETFG + A DRP+QFAG+R D     I     F+CK A DYLP PEA+ ITG
Sbjct: 19  PSIFWHDYETFGANPAKDRPSQFAGIRTDMDLNIISEPVTFYCKQASDYLPSPEAILITG 78

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A   G+ EAEF  RI+  FS PNTC+ GYN++RFDD  +R  FYRNF+D Y   W
Sbjct: 79  ITPQLANLKGMPEAEFMARINSEFSQPNTCVAGYNSLRFDDEVTRYGFYRNFFDPYAREW 138

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWD++D++RA YA  P+GI WP ++DG+ SFKL+ L  AN + H  AHDA +DVY
Sbjct: 139 QNGNSRWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTQANNLSHDKAHDAMSDVY 198

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+A+  LI+E++PKLF+Y ++ R KN++ K ID+ NM PL+HVS    A    T LIAP
Sbjct: 199 ATIAMAKLIKERQPKLFDYYFNLRKKNEVSKQIDVLNMQPLIHVSSKISALHGCTTLIAP 258

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           VA H   K+++I  NL+ D+    +L + ++ +R++T   +L    +P+ +K++H+NKCP
Sbjct: 259 VAHHSTNKNAIICVNLAMDVTPLIELSADEIRERMYTPRVDLASDELPIGLKQLHINKCP 318

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +         + +R  ID +        LRQ   +R++  A+++  + +   D D QLY
Sbjct: 319 FIATAKTLTDGNAQRLEIDKEFARAQYKRLRQHPEIREKLVAVFDTEHGNEISDPDLQLY 378

Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
             GFF+  D+  M+ I  TAP+ L+ L L F D RLPE+ FRYRARN+P TL + E+Q W
Sbjct: 379 SGGFFSHADKSKMEIIRHTAPQHLAALELDFDDERLPEMLFRYRARNYPETLDDTEQQRW 438

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
               +  L      +Y  KL++L  + + DE K+ L+ AL  YL  +
Sbjct: 439 RTFCQSRLND---PDYMIKLETLVNDTEADEEKQKLLTALCHYLSNL 482


>gi|239815634|ref|YP_002944544.1| exonuclease I [Variovorax paradoxus S110]
 gi|239802211|gb|ACS19278.1| Exodeoxyribonuclease I [Variovorax paradoxus S110]
          Length = 479

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 194/481 (40%), Positives = 280/481 (58%), Gaps = 14/481 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ +DYETFG     DRP+QFA +R D +  +I    + +CKPA DYLP PEA  I
Sbjct: 1   MNHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ  L  G+ E  F+ +I + FS P T  +GYN IRFDD  +R +F+RN  D Y  
Sbjct: 61  TGITPQLCLERGIPEHAFAAQIEKAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W N   RWDLLDV+R  YA  PDGI+WP ++DG  SFKL+DLA ANG+ H +AHDA +D
Sbjct: 121 EWQNDCGRWDLLDVVRLTYALRPDGIEWPKKEDGKPSFKLEDLARANGLLHESAHDALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSN 236
           V AT+AL  LIRE++PKLFE+ +    K+++   +      +   P +HVSGMF   R  
Sbjct: 181 VRATIALARLIRERQPKLFEFAFGLHKKDRVASELGLPAMRETARPFLHVSGMFPVERGC 240

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
             ++ P+A HP  K+ +I  +L+ D    +DLD   L  RLFT   +L +G+V +P+K +
Sbjct: 241 LGVMWPLASHPTNKNELIAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVVRLPVKGI 300

Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
           HLNK P+++  +        ERW +D    L +  + R   ++   +  +Y +P  +   
Sbjct: 301 HLNKSPMVVGNLRTLAPAMAERWNVDLDAALRHAAIARDLPDMSAIWSQVYARPKEAVPD 360

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
            VD  LY GF  + DR+ ++++   +PE+L+     F D RL E+ FRYRARN+P  LS 
Sbjct: 361 -VDEDLYGGFVGNGDRRRLNQLRALSPEELAKDRTGFDDGRLEEILFRYRARNWPELLSS 419

Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           +E + W   R   L +       IE   +++ +LS     DE  E ++ ALYEY + + P
Sbjct: 420 EEAERWEALRAARLFKGEGGARTIEMLFSEVDALSE--TADERGEEILGALYEYAEAIAP 477

Query: 470 K 470
           +
Sbjct: 478 E 478


>gi|325983472|ref|YP_004295874.1| exodeoxyribonuclease I [Nitrosomonas sp. AL212]
 gi|325532991|gb|ADZ27712.1| Exodeoxyribonuclease I [Nitrosomonas sp. AL212]
          Length = 478

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 190/475 (40%), Positives = 270/475 (56%), Gaps = 7/475 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT  F  +DYETFG D   DRPAQFAGVR D    +I    + +CKP  D+LP PEA  +
Sbjct: 1   MTMTFYWHDYETFGADPRRDRPAQFAGVRTDEALNEIGEPLMIYCKPTRDFLPHPEACLL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ A   G+ E EF  RIH   + P TC +GYN++RFDD  +R   YRNFYD Y  
Sbjct: 61  TGITPQLADAQGLPEPEFIARIHAELAQPGTCGVGYNSLRFDDEVTRFTLYRNFYDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWD++D++R  YA  P GI WP  +DG  SFKL+DL  ANGI H +AHDA +D
Sbjct: 121 EWQQGNSRWDIIDLVRMTYALRPAGITWPQHEDGQPSFKLEDLVAANGIWHESAHDALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V  T+AL  L+R ++P+LF++L   R+K +    +D+    P++H + M+ A    T+LI
Sbjct: 181 VRVTIALARLLRMQQPRLFDWLLQLRDKRKAAAQLDLITHNPVLHTTRMYPAKTGCTSLI 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+   P   +S++  +L  D  +F  L++  LA  LFT +D+L +G+  +P+K + +NK
Sbjct: 241 MPLIVEPGNNNSILVYDLRHDPEMFLPLNADDLAPLLFTRNDDLPEGMQRLPVKSIKINK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           CP L P +    E  ER  +D   C  +   L    +   R    Y      SS DVD  
Sbjct: 301 CPALAPRNTLDNETAERIALDLDVCYRHWQTLCAMPDFFQRVATAYTSRTFESSSDVDVA 360

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF  + D  ++++I   +P+QL  +   F D+RL EL FRYRARN+P TL   E + 
Sbjct: 361 LYDGFLDNADAALLEQIRAASPQQLGEMQFNFHDKRLSELLFRYRARNWPETLKPAEAER 420

Query: 420 WLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W   R + LT          +E+  ++  L    K D   E +++A+ ++   ++
Sbjct: 421 WELLRLQRLTQADGGGSITFDEFSTQIALLREARKTDGQAEQILDAVEDWGNDLL 475


>gi|261492018|ref|ZP_05988593.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261312301|gb|EEY13429.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 515

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 221/476 (46%), Positives = 300/476 (63%), Gaps = 6/476 (1%)

Query: 1   MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M++ F    YDYE+FG   ALDRPAQFAG+R D  +  I    +FFCK   DYLP PEAV
Sbjct: 1   MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+   +GV E EF+ RIH  FS  NTC IGYNNIR+DD  +R  F+RNFYD Y
Sbjct: 61  MVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  PDGI+WP+ + G  SFKL++L  ANGI H NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           +DVYAT+A+  LI++K+PKLF++ ++ R+K ++ KLID   MTPLVHVSGM G  R NTA
Sbjct: 181 SDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
            + P+AWH   +++VI C+LSGDM      ++  L +RL+T  DEL +  + VP+K VH+
Sbjct: 241 WVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELSVPLKLVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355
           NKCPIL P      E+ ER GID   CLENL  L+ Q         +    +     S +
Sbjct: 301 NKCPILAPAKTLLPENAERLGIDRALCLENLKTLKAQKSLIREKVIEIFNEERTFEPSTN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V++ LYDGFF+  D+  M  +    PE L+   L F D R+  L F YRAR++P TLS  
Sbjct: 361 VENTLYDGFFSPADKNNMAILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
           E+  W +H  + +  ++ E++   +  L  ++  +  K  L+  L  Y + +  ++
Sbjct: 421 EQIKWQKHCNQQI-EAKAEQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQISQQQ 475


>gi|332531005|ref|ZP_08406927.1| exonuclease I [Hylemonella gracilis ATCC 19624]
 gi|332039566|gb|EGI75970.1| exonuclease I [Hylemonella gracilis ATCC 19624]
          Length = 488

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 195/487 (40%), Positives = 275/487 (56%), Gaps = 17/487 (3%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F  +DYETFG +   DRP+QFAG+R D    +I    + +C+PADDYLPDP A  +
Sbjct: 1   MALTFFWHDYETFGVNPRRDRPSQFAGIRTDADLNEIGEPVMLYCRPADDYLPDPGACLL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ  L  GV E EF+ RI    + P T  +GYN IRFDD  +R +F+RN  D Y  
Sbjct: 61  TGITPQTCLEHGVPEHEFAARIEHELAQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR----DDGATSFKLQDLALANGIEHVNAHD 176
            W N  SRWDLLDV+R   A  P+GI+WP        G  SFKL+ L  ANG+ H  AHD
Sbjct: 121 EWQNECSRWDLLDVVRLCRALRPEGIEWPMHREGEMKGKPSFKLEHLTAANGLSHEAAHD 180

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL----IDIQNMTPLVHVSGMFGA 232
           A +DV AT+AL  LIR+K+P+LF++    R K+ +              P +HVSGMF A
Sbjct: 181 ALSDVRATIALARLIRDKQPRLFDFALALRKKDAVAAELGLPTSQAQARPFLHVSGMFPA 240

Query: 233 SRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVP 291
            R   +L+ P+A HP  K+ +I  +LS D      L    +  RL+T  D+L +G+  +P
Sbjct: 241 ERGCLSLMWPLATHPTNKNELIAWDLSADPAELAHLTVDDIRLRLYTRTDDLPEGVSRLP 300

Query: 292 IKEVHLNKCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT 350
           IK VHLNK P+++  +   + E  +RWG+D    L N  + R+  ++   +  ++ +P  
Sbjct: 301 IKSVHLNKSPMVVSNLKTLRPELAQRWGLDLDAALRNAAVARELPDMSALWPQVFQRPAQ 360

Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
           + + DVD  LY GF  + DR+ + R+    P++L+T    F D RL ++ FRYRARNFP 
Sbjct: 361 AGTPDVDEDLYGGFVGNEDRRRLARLRALPPQELATSRAGFDDARLGDILFRYRARNFPD 420

Query: 411 TLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEY 463
           TL+E E+  WL HR   L         ++    +L  L  +   +GDE  E ++ ALY Y
Sbjct: 421 TLNEDEQARWLAHRVARLVEGADGARNLDALFAELDRLGQDATEQGDERGEAILEALYAY 480

Query: 464 LQWVIPK 470
            + + P+
Sbjct: 481 AEQIAPE 487


>gi|311695266|gb|ADP98139.1| exonuclease I [marine bacterium HP15]
          Length = 481

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 209/479 (43%), Positives = 291/479 (60%), Gaps = 10/479 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F  +DYETFG D   DRP+QFAGVR D     IE   V +CKPADDYLP PEA  I
Sbjct: 1   MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQKAL DG  EAEF  +I++ FS P TC++GYN++RFDD  +R+  YRN  D Y  
Sbjct: 61  TGITPQKALEDGFPEAEFIAQINEAFSQPGTCVVGYNSLRFDDEVTRHTLYRNLRDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWD++D++R  YA  P+GI WP ++DG+ SFKL++L +ANGI H  AHDA +D
Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGINWPRKEDGSPSFKLEELTVANGIAHEAAHDAMSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+A+  LI+EK+PKLF+++   ++K+  R ++D   M P+ H+S  + ASR   AL+
Sbjct: 181 VEATIAMAKLIKEKQPKLFDFVLQNKDKHSARAMLDTAAMKPVFHISAKYPASRGCCALV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
           APVA HP  K+ VI  +L  D     +  + Q+ +R+FTS  EL +G+   P+K V LNK
Sbjct: 241 APVAEHPSNKNLVIVYDLREDPTELINASAEQIRERVFTSQAELGEGVSRFPLKGVQLNK 300

Query: 300 CPILMPIDY---CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
           CP+L P +       E  E   +D      NL +LR+  +L  R    +++P+ S   D 
Sbjct: 301 CPVLAPANMLSTLSPERLEELALDGDTLRANLAMLRKAPDLPSRIAEAFDQPHESDLTDP 360

Query: 357 DSQLYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           D QLY G F +  DR+ ++ +L    E L  L + F D RL EL FRYRARN+P +L  +
Sbjct: 361 DEQLYAGGFISKADREKLNWVLEQPVETLGELEVTFEDDRLQELLFRYRARNYPGSLVGE 420

Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           E + W E R + L         +E +  +LQ L+ + +    K  ++  L+ Y + +IP
Sbjct: 421 EMERWEEFRSQRLMHPKKGWRSLEAFAQELQRLAADPELTPQKRHILEDLHLYGESLIP 479


>gi|261494569|ref|ZP_05991051.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309760|gb|EEY10981.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 515

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 221/476 (46%), Positives = 300/476 (63%), Gaps = 6/476 (1%)

Query: 1   MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M++ F    YDYE+FG   ALDRPAQFAG+R D  +  I    +FFCK   DYLP PEAV
Sbjct: 1   MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+   +GV E EF+ RIH  FS  NTC IGYNNIR+DD  +R  F+RNFYD Y
Sbjct: 61  MVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  PDGI+WP+ + G  SFKL++L  ANGI H NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           +DVYAT+A+  LI++K+PKLF++ ++ R+K ++ KLID   MTPLVHVSGM G  R NTA
Sbjct: 181 SDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
            + P+AWH   +++VI C+LSGDM      ++  L +RL+T  DEL +  + VP+K VH+
Sbjct: 241 WVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELSVPLKLVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355
           NKCPIL P      E+ ER GID   CLENL  L+ Q         +    +     S +
Sbjct: 301 NKCPILAPAKTLLPENAERLGIDRALCLENLKTLKAQKSLIREKVIEIFNEERTFEPSTN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V++ LYDGFF+  D+  M  +    PE L+   L F D R+  L F YRAR++P TLS  
Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
           E+  W +H  + +  ++ E++   +  L  ++  +  K  L+  L  Y + +  ++
Sbjct: 421 EQIKWQKHCNQQI-EAKAEQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQISQQQ 475


>gi|24374325|ref|NP_718368.1| exonuclease I [Shewanella oneidensis MR-1]
 gi|24348874|gb|AAN55812.1|AE015718_4 exodeoxyribonuclease I [Shewanella oneidensis MR-1]
          Length = 470

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 207/468 (44%), Positives = 284/468 (60%), Gaps = 5/468 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 +DYETFG + A DRPAQFAG+R D     I   E F+CK + DYLP PEA+ IT
Sbjct: 6   QPSIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ E EF  RIH  FS  NTC+ GYN++RFDD  +R  FYRNF D Y   
Sbjct: 66  GITPQLANLKGLPETEFMGRIHTLFSQANTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGN+RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L  ANG+ H  AHDA +DV
Sbjct: 126 WQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  LI+EK+PKL++Y ++ R K  +   ID+ NM PL HVS    A    T LIA
Sbjct: 186 YATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISAMHGCTTLIA 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVA HP  K+++I  NL+ D+    +LD  Q+  R++T   EL    +P+P+K+VHLNKC
Sbjct: 246 PVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELADDELPIPVKQVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P +           ER  ID          L+    LR++   ++     +++ D D  L
Sbjct: 306 PFITSAKILDDAQAERLSIDKAFARGQYKRLKAHPELREKLAQLFEHDGEATTTDPDLML 365

Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+  D+  M+ I  T P+ L+ L+L F D R+PE+ FRYRARN+P  L ++E   
Sbjct: 366 YSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLDDQESHR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W    ++ L     ++Y  KL++L  + +GDE K+ L+ AL  YL+ +
Sbjct: 426 WRTFCQQRLAD---QDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL 470


>gi|190149982|ref|YP_001968507.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263310|ref|ZP_07544928.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189915113|gb|ACE61365.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871372|gb|EFN03098.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 514

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 218/473 (46%), Positives = 304/473 (64%), Gaps = 6/473 (1%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M  +  F  YDYE+FG   ALDRPAQFAG+R D  +  I    +F+CK   DYLP PEAV
Sbjct: 1   MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+   +GV E EF+ RIH  FS PNTCI+GYNNIR+DD  +R  F+RNF+D Y
Sbjct: 61  MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  PDGI+W   ++G  +FKL++L  ANGI H NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+V LI++K+PKLF++ ++ R K ++ K+ID   MTPLVHVSGMFG +R+NTA
Sbjct: 181 ADVYATIAMVKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
            IAP+AWHP  ++ V+ C+LSGD+       + +L  RL+T  +EL +G+ PVP+K VH+
Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355
           N+CPI+ P      E+  R GID +RCLENL LL+           +    +     S +
Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V++ LYDGFF+  D+  M  +    P++L+   L F+D R+  L F YRAR++P TLS  
Sbjct: 361 VETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           E+  W ++  + +  ++  ++   + SL   +  +  K  L+  L  Y   + 
Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472


>gi|91788799|ref|YP_549751.1| exonuclease I [Polaromonas sp. JS666]
 gi|91698024|gb|ABE44853.1| Exodeoxyribonuclease I subunit C [Polaromonas sp. JS666]
          Length = 480

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 184/480 (38%), Positives = 278/480 (57%), Gaps = 14/480 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG +   DRP+QFAG+R D +  ++    + +C+PA+DYLPDP +  IT
Sbjct: 3   PHTFLWHDYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCLIT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ  L  G+ E  F+ +I Q  + P T  +GYN IRFDD  +R +F+RN  D Y   
Sbjct: 63  GITPQLCLERGIPEHAFAAKIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYARE 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  YA  P+GI WP+++DG  SFKL+DLA ANG+ H  AHDA +DV
Sbjct: 123 WQNDCGRWDLLDVVRMAYALRPEGIVWPTKEDGKPSFKLEDLARANGLLHEAAHDALSDV 182

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSNT 237
            AT+AL  LIR+ +PKLF++      K+++   +      Q+ TP +HVSGMF   R   
Sbjct: 183 RATIALARLIRKAQPKLFDFCLGLHKKDRVAAELGLPASRQSATPFLHVSGMFPPERGCL 242

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296
           A++ P+A HP  K+ ++  +L+ D      LD   L +RLFT   +L +G++ +P+K VH
Sbjct: 243 AVMWPLATHPTNKNELLAWDLAHDPSELPLLDVATLRQRLFTRSADLPEGVLRLPLKSVH 302

Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           LNK P+++  +     E   +WG+D    L N        ++   +  ++ +P  ++   
Sbjct: 303 LNKSPMVVRKLQTLTPEMAVKWGVDMDAALRNAEKAAGLPDMSAIWPEVFQRPKEAAPD- 361

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           VD  LY GF  + DR+ ++++   +P +L+     F D RL EL FRYRARNF  TL+ +
Sbjct: 362 VDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDDRLQELLFRYRARNFAETLTPE 421

Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
           E + W  HR   L         ++    ++ +LS     DE  + ++ ALY+Y + + P+
Sbjct: 422 EAERWEAHRAARLLEGEGGARNVDALFAEIDTLSE--TTDERGQAILGALYDYAEAIAPE 479


>gi|119469387|ref|ZP_01612326.1| exonuclease I [Alteromonadales bacterium TW-7]
 gi|119447251|gb|EAW28520.1| exonuclease I [Alteromonadales bacterium TW-7]
          Length = 481

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 212/472 (44%), Positives = 301/472 (63%), Gaps = 8/472 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               +DYET+G     D+P+QFAG+R D     I    + +CKP  DYLP PEA  ITGI
Sbjct: 10  TIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A++ G+VEAEF  +IH  FS PNTC+ GYN+IRFDD  SR  FYRNFYD Y   + 
Sbjct: 70  TPQVAMKKGLVEAEFIAKIHAEFSAPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYK 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N NSRWD++D++RA YA  P+GI+WP ++DG+ SFKL+ L +ANGIEH  AHDA +DV A
Sbjct: 130 NNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTA 189

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  LI+EK+PKL+ + +  RNK  L  L+D+ NMTPLVH S    A++  T  +AP+
Sbjct: 190 TIALAKLIKEKQPKLYNFFFGLRNKKALGDLVDVFNMTPLVHTSSRIPATQGCTTWVAPM 249

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           ++HP  K++VI  +L+   +V  DL+  +L KRL+T   +L +G +PV +K VHLNKCPI
Sbjct: 250 SFHPVNKNAVICFDLTQSPQVLLDLNVEELRKRLYTKRVDLAEGDLPVGLKLVHLNKCPI 309

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361
           L P      E+  R GID ++CL NL +L+  T+LRD+   ++N+    S++ +VD  LY
Sbjct: 310 LAPAKTLLPENAARLGIDREQCLANLAILKANTDLRDKVTEVFNEQGDYSATTNVDYLLY 369

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF +  D+     I    P++L+ LNL F D++   L FRYRARN+P TL+++E   W 
Sbjct: 370 DGFTSHADKAKFAIIRDAKPDELAGLNLDFEDKKFNTLLFRYRARNWPETLNQQELDQWR 429

Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ +  L           +++   L++L+ E+   E    ++ ALY Y Q +
Sbjct: 430 QYCQNKLMHGEDQPSISAQDFMITLENLAHEHDDSEKNLTILKALYNYAQSM 481


>gi|53729178|ref|ZP_00134021.2| COG2925: Exonuclease I [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208153|ref|YP_001053378.1| exonuclease I [Actinobacillus pleuropneumoniae L20]
 gi|126096945|gb|ABN73773.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 514

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 215/473 (45%), Positives = 301/473 (63%), Gaps = 6/473 (1%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M  +  F  YDYE+FG   ALDRPAQFA +R D  +  I    +F+CK   DYLP PEAV
Sbjct: 1   MNKNLTFFFYDYESFGVSPALDRPAQFACIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+   +GV E EF+ RIH  FS PNTCI+GYNNIR+DD  +R  F+RNF+D Y
Sbjct: 61  MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  PDGI+W   ++G  +FKL++L  ANGI H NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+  LI++K+PKLF++ ++ R K ++ K+ID   MTPLVHVSGMFG +R+NTA
Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
            IAP+AWHP  ++ V+ C+LSGD+       + +L  RL+T  +EL + + PVP+K VH+
Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEAVAPVPLKGVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355
           N+CPI+ P      E+  R GID +RCLENL LL+           +    +     S +
Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V++ LYDGFF+  D+  M  +    P++L+   L F+D R+  L F YRAR++P TLS  
Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           E+  W ++  + +  ++  ++   + SL   +  +  K  L+  L  Y   + 
Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472


>gi|303250424|ref|ZP_07336622.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307252223|ref|ZP_07534120.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302650750|gb|EFL80908.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306860145|gb|EFM92161.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 514

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 217/473 (45%), Positives = 303/473 (64%), Gaps = 6/473 (1%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M  +  F  YDYE+FG   ALDRPAQFAG+R D  +  I    +F+CK   DYLP PEAV
Sbjct: 1   MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+   +GV E EF+ RIH  FS PNTCI+GYNNIR+DD  +R  F+RNF+D Y
Sbjct: 61  MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  PDGI+W   ++G  +FKL++L  ANGI H NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+  LI++K+PKLF++ ++ R K ++ K+ID   MTPLVHVSGMFG +R+NTA
Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
            IAP+AWHP  ++ V+ C+LSGD+       + +L  RL+T  +EL +G+ PVP+K VH+
Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355
           N+CPI+ P      E+  R GID +RCLENL LL+           +    +     S +
Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V++ LYDGFF+  D+  M  +    P++L+   L F+D R+  L F YRAR++P TLS  
Sbjct: 361 VETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           E+  W ++  + +  ++  ++   + SL   +  +  K  L+  L  Y   + 
Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472


>gi|146292669|ref|YP_001183093.1| exonuclease I [Shewanella putrefaciens CN-32]
 gi|145564359|gb|ABP75294.1| Exodeoxyribonuclease I subunit C [Shewanella putrefaciens CN-32]
          Length = 470

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 212/468 (45%), Positives = 281/468 (60%), Gaps = 5/468 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 +DYETFG + A DRPAQFAG+R D     I   E F+CK A DYLP PEA+ IT
Sbjct: 6   QPSIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ E EF  RI   FS PNTC+ GYN++RFDD  +R  FYRNF D Y   
Sbjct: 66  GITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD++D++RA YAF PDGI WP +DDG+ SFKL+ L  ANG+ H  AHDA +DV
Sbjct: 126 WQNGNSRWDIIDLVRACYAFRPDGINWPLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  LIREK+PKL+ Y ++ R K  +   ID+ NM PL HVS    A    T LI+
Sbjct: 186 YATIAMAKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLIS 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVA HP  K++VI  NL+ D+    DL+  Q+  R++T+  EL +  +P+P+K++HLNKC
Sbjct: 246 PVAHHPTNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P +            R  ID     E    LR    LR++   ++     S++ D D  L
Sbjct: 306 PFITSAKILDDAQASRLNIDKAFAREQYKRLRNHPELREKLAQLFEHDGESTTVDPDLML 365

Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+  D+  M+ I  T P+ L+ L L F D R+PE+ FRYRARN+P  L ++E   
Sbjct: 366 YSGGFFSSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQESHR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W E  +  L     ++Y  KL++L      DE K+ L+ AL  YL+ +
Sbjct: 426 WREFCQNRLAD---QDYLLKLENLLQNTVDDENKQKLLAALCHYLREL 470


>gi|237807889|ref|YP_002892329.1| Exodeoxyribonuclease I [Tolumonas auensis DSM 9187]
 gi|237500150|gb|ACQ92743.1| Exodeoxyribonuclease I [Tolumonas auensis DSM 9187]
          Length = 506

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 219/464 (47%), Positives = 301/464 (64%), Gaps = 2/464 (0%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N F+ +DYETFG D A DRPAQFAG+R D  +       V +C+ + DYLP PEA  ITG
Sbjct: 42  NTFLFHDYETFGIDPARDRPAQFAGIRTDADFNICGEPVVIYCQMSPDYLPAPEACLITG 101

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A ++G+ EA+F R IHQ FS P TC++GYNNIRFDD ++R  FYRNF D Y +SW
Sbjct: 102 ITPQIANQNGICEADFFRTIHQQFSQPATCVLGYNNIRFDDEFTRYGFYRNFLDPYAYSW 161

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             GNSRWDLLDV RA YA  P+GI W    +G  SF+L+ L++ANGI+H NAHDA +DVY
Sbjct: 162 QQGNSRWDLLDVARAFYALRPEGINWVYDAEGKPSFRLEKLSVANGIQHENAHDAMSDVY 221

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ L   +++ +P+LFEYL  +R KN+L+ LIDI N+ PLVHVSGMF A +   + IAP
Sbjct: 222 ATIGLAKSLKQAQPRLFEYLSTHRGKNKLKNLIDIINIKPLVHVSGMFSAVQGCVSWIAP 281

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +AWHP   ++VI  +L  D+    +L+  +L +RL+T  D++    PVP+K +H+NKCP+
Sbjct: 282 MAWHPTNNNAVIVIDLHKDLSPLLELNITELRERLYTRKDDITDGSPVPVKLIHINKCPV 341

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQLY 361
           L P     +E  +  GI+   C++NL +LRQ   +R++   +++  Y   ++QD +  LY
Sbjct: 342 LAPASSLSEERAQELGINRDLCMQNLAVLRQNPQIREKLAGLFSDEYIPPANQDPEHMLY 401

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
            GFF++ DR  +D I + + EQL+     F D RLP L FRYRARN+PHTLS +E+Q W 
Sbjct: 402 QGFFSEADRAAIDLIQQASAEQLAAGQYQFHDPRLPTLLFRYRARNYPHTLSPREQQQWQ 461

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
           +     L   R E Y  +L++L         +  +I AL  YLQ
Sbjct: 462 QFCVDALNS-RAEPYLLRLEALLEGKVPGTREWNIIKALALYLQ 504


>gi|91793639|ref|YP_563290.1| exonuclease I [Shewanella denitrificans OS217]
 gi|91715641|gb|ABE55567.1| Exodeoxyribonuclease I subunit C [Shewanella denitrificans OS217]
          Length = 470

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 203/469 (43%), Positives = 282/469 (60%), Gaps = 5/469 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +      +DYETFG + A DRP+QFAG+R D     I   E F+CK A DYLP PEA+ I
Sbjct: 5   LQPTLFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKLATDYLPSPEAILI 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ A   G+ E EF  RI+  FS  NTC++GYN++RFDD  SR  FYRNF D Y  
Sbjct: 65  TGITPQLANMKGIPETEFMGRINALFSQENTCVVGYNSLRFDDEVSRYGFYRNFIDPYAR 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWD++D++RA YAF PDGI WP ++DG  SFKL+ L  ANG+ H  AHDA +D
Sbjct: 125 EWQNGNSRWDIIDLVRACYAFRPDGINWPRKEDGTVSFKLELLTQANGLSHEKAHDAMSD 184

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+A+  LI++ +PKL++Y +  R K  +   ID+  M PLVHVS    A  + T LI
Sbjct: 185 VYATIAMAKLIKQVQPKLYDYYFSLRRKQAVAAQIDVLKMQPLVHVSSKISALNACTTLI 244

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
           AP+A+HP  K++V+  NL+ D+    +L + ++A R++TS  +L    +P+P+K++HLNK
Sbjct: 245 APMAYHPTNKNAVLCVNLAMDISPLLELSAEEIAARMYTSRADLAPDELPIPLKQIHLNK 304

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           CP +        +   R   D     E    L+Q   LR++   ++ +    +  D D  
Sbjct: 305 CPFIASPKLLDDDLTSRLNFDKAFAREQYKRLKQHPELREKLVGVFEQTKEFNHSDPDLM 364

Query: 360 LY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           LY  GFF+  D+  MD I +T P+ L+ L+L F D R+ E+ FRYR RN+P  L   E  
Sbjct: 365 LYGGGFFSHADKAKMDIIRQTQPQNLAALDLKFDDNRIAEMLFRYRGRNYPELLDHDESV 424

Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W E  +  L  +   +Y  KL++L      DE K+ L+ AL +YLQ +
Sbjct: 425 RWREFCQSRLADA---DYVIKLENLLEASAQDEHKQKLLRALCQYLQAL 470


>gi|114562814|ref|YP_750327.1| exonuclease I [Shewanella frigidimarina NCIMB 400]
 gi|114334107|gb|ABI71489.1| Exodeoxyribonuclease I subunit C [Shewanella frigidimarina NCIMB
           400]
          Length = 473

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/469 (43%), Positives = 287/469 (61%), Gaps = 6/469 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T     +DYETFG + + DRP+QFAG+R D +   I   E F+CK A DYLP PEA+ IT
Sbjct: 8   TPSLYWHDYETFGANPSKDRPSQFAGIRTDLELNIIGEPETFYCKLAPDYLPSPEAILIT 67

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   GV EAEF +RI+  FS PNTC++GYN++RFDD  SR  FYRNF D Y   
Sbjct: 68  GITPQLANLKGVPEAEFMKRINTLFSQPNTCVVGYNSLRFDDEVSRYGFYRNFIDPYGRE 127

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD++D++RA YAF PDGI WP ++DG+ SFKL+ L  ANG+ H  AHDA +DV
Sbjct: 128 WQNGNSRWDIIDLVRACYAFRPDGINWPKKEDGSPSFKLELLTQANGLSHEKAHDAMSDV 187

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  LI++  PKL+EY ++ R K  +   ID+  M PLVHVS    A +  T LIA
Sbjct: 188 YATIAMAKLIKQTHPKLYEYYFNLRRKQAVADHIDVLKMQPLVHVSSKISALQGCTTLIA 247

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVA+HP  K++VI  NL+ D+    +L + ++  R++TS   L +  + +P+K++HLNKC
Sbjct: 248 PVAYHPTNKNAVICINLAMDISPLLELSAQEINDRMYTSRQNLAENELAIPLKQIHLNKC 307

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD--S 358
           P +        E  E+   D     E    L+    LR++   ++       +       
Sbjct: 308 PFIGSPKLLDDEVAEKLQFDKAFAREQYKRLKNHPELREKLNQVFELESDRKAITDPDLM 367

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
               GFF+  D+  +D I  TAP  L+ L L F D R+ E+ FR+RARN+P TLS+ E +
Sbjct: 368 LYSGGFFSHADKTKIDIICHTAPHNLAALALQFDDPRINEMLFRFRARNYPETLSDSEAR 427

Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W +  ++ L+ +   +Y  KL++L  E   +E K+ L+ ALY+YLQ +
Sbjct: 428 KWRDFCQQRLSDA---DYVIKLENLVEETSENEHKQKLLKALYQYLQSL 473


>gi|68346412|gb|AAY94018.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf-5]
          Length = 497

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 182/472 (38%), Positives = 278/472 (58%), Gaps = 13/472 (2%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               YDYET G +   DRP Q AG+R D    +I+     +C+P+DD LP P A  ITGI
Sbjct: 25  SLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGI 84

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TP +    G+ EA+F  R+H+  + P TC +GYN +RFDD  +R   YRNF+D Y   W 
Sbjct: 85  TPGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREWQ 144

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            GNSRWDL+DV+R  YA  P GI WP       S KL+ L  ANGI+H  AHDA +DV A
Sbjct: 145 GGNSRWDLIDVVRTAYALRPQGIVWPEEQGQ-VSLKLERLTAANGIDHGQAHDALSDVRA 203

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  L+R+K+P+L+++L+  R+K ++   + +  + P+VH+SG F A+R    ++ P+
Sbjct: 204 TIALARLVRDKQPRLYDWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAARHYIGVVLPL 261

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKCPI 302
           AWHPR ++++I C+L  D +   +LD+  L +RL+T  ++ L+G +PVP+K +H+N+CP+
Sbjct: 262 AWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRCPV 321

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P+   + E  +R  +D +        L + Q   RD+   IY     ++S D + QLY
Sbjct: 322 VAPLSVLRSEDQQRLHLDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQQLY 381

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF  D DR++ +++    P  L+    PF D RLPEL FRYRARNFP TL++ E++ WL
Sbjct: 382 DGFIGDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQERWL 441

Query: 422 EHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
              ++ L          +E ++  L+        D  +  +++   +Y+Q +
Sbjct: 442 VFCQQRLLDPQLGAPNTLESFRQGLEQ--SLLSADPMQRQVLDQWQDYVQAL 491


>gi|120555513|ref|YP_959864.1| exonuclease I [Marinobacter aquaeolei VT8]
 gi|120325362|gb|ABM19677.1| Exodeoxyribonuclease I subunit C [Marinobacter aquaeolei VT8]
          Length = 482

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 200/480 (41%), Positives = 282/480 (58%), Gaps = 11/480 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F  +DYETFG D   DRP+QFAGVR D     IE   V +CKPADDYLP PEA  I
Sbjct: 1   MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQKAL DG  EAEF  +I+  FS P TC +GYN++RFDD  +R+  YRN  D Y  
Sbjct: 61  TGITPQKALEDGFPEAEFIAQINAAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWD++D++R  YA  P+GI WP ++DG+ SF+L++L +ANGI H  AHDA +D
Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGINWPRKEDGSPSFRLEELTVANGIAHEAAHDAMSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+A+  LI+EK+PKLF+++ + ++K+  R+++D  +M P+ H+S  + A+R   AL+
Sbjct: 181 VLATIAVAKLIKEKQPKLFDFVLNNKDKHSARQMLDTASMKPVFHISAKYPAARGCCALV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
           AP+A     K+ VI  +L  D     +    ++ +R+FTS  EL +G+   P+K V LNK
Sbjct: 241 APLAESLSNKNQVIVYDLREDPEALINASVEEIRERVFTSQAELGEGVSRFPLKGVQLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDH---KRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-QD 355
           CP+L P         ER             NL  LR+  +L  R    + + +  S   D
Sbjct: 301 CPVLAPATMLSTLSQERLAELELDGDVLRANLAKLRKAPDLPARVAQAFEQDFQGSDLTD 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
            D QLY G F     +     L T P + L+   + F D RLPE+ FRYRARN+P TL  
Sbjct: 361 PDEQLYAGGFISKTDREKLNWLLTQPVDTLAEQEMSFEDPRLPEMLFRYRARNYPDTLIG 420

Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           +E + W + R + L +       +E Y  +LQ L+ + +    K+ ++  L+ Y + +IP
Sbjct: 421 EEMERWEQFRTERLMQPKKGWRSLEAYGQELQRLAADTELTPRKQQILEDLHLYGESLIP 480


>gi|114047972|ref|YP_738522.1| exonuclease I [Shewanella sp. MR-7]
 gi|113889414|gb|ABI43465.1| Exodeoxyribonuclease I subunit C [Shewanella sp. MR-7]
          Length = 470

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 209/468 (44%), Positives = 288/468 (61%), Gaps = 5/468 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 +DYETFG   A DRPAQFAG+R D     I   E F+CK + DYLP PEA+ IT
Sbjct: 6   QPSIFWHDYETFGATPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ E EF  RIH  FS PNTC+ GYN++RFDD  +R  FYRNF D Y   
Sbjct: 66  GITPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGN+RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L  ANG+ H  AHDA +DV
Sbjct: 126 WQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  LI+EK+PKL++Y ++ R K  +   ID+ NM PL HVS    A +  T LIA
Sbjct: 186 YATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIA 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVA HP  K+++I  NL+ D+    +LD  Q+  R++T   EL +  +P+P+K+VHLNKC
Sbjct: 246 PVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAEDELPIPVKQVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P +           ER  ID     E    L+    LR++   ++      ++ D D  L
Sbjct: 306 PFITSAKILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLML 365

Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+  D+  M+ I  T P+ L+ L+L F D R+PE+ FRYRARN+P  L+++E Q 
Sbjct: 366 YSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEAQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W    ++ L+    ++Y  KL++L  + + DE K+ L+ AL  YL+ +
Sbjct: 426 WRIFCQQRLSD---QDYLLKLENLLQDTEADEYKQKLLAALCHYLRGL 470


>gi|299065319|emb|CBJ36488.1| exodeoxyribonuclease I [Ralstonia solanacearum CMR15]
          Length = 477

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/479 (39%), Positives = 288/479 (60%), Gaps = 11/479 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+ F+ +DYETFG     DRPAQFAG+R D +  +I      FC+P++D+LPDP +  I
Sbjct: 1   MTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCRPSNDWLPDPVSCLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+ L+ G+ E  F++ I +  + P T  +GYN+IRFDD  +R++F+RN  D Y  
Sbjct: 61  TGITPQQCLKTGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W N   RWDLLDV+R  +A  PDG++WP  DDG  SFKL+ L+ ANG++H  AHDA +D
Sbjct: 121 EWQNTCGRWDLLDVVRTTWALRPDGVEWPKNDDGKPSFKLEHLSQANGLQHEAAHDALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL   +R  +P+LF++ +  R K ++   I      PL+H+SGM+G  R   A++
Sbjct: 181 VRATIALARRVRTAQPRLFDFCFALRKKERVLAEIG-DAPRPLIHISGMYGVDRGCMAVV 239

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+ WHP  K+ +I  +LS D      +D   + +RLFT   +L +G   +PIK +H+NK
Sbjct: 240 WPLGWHPTNKNELIAWDLSFDPSELFHMDVAAIRERLFTRSADLTEGTTRLPIKSIHINK 299

Query: 300 CPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
            PI++  +   +    ERWG+D      +  + +   +LR+ ++ +Y +        VD 
Sbjct: 300 SPIVIGNLKTLQPAQAERWGVDFAAIERHAGIAQGAPDLRETWRQVYARELEPIED-VDQ 358

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
            LY GF  + DR+ ++ +   + EQL+ L+  F+D RLPEL  RYRARNFP TL+E E +
Sbjct: 359 NLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLLRYRARNFPDTLTEDEHE 418

Query: 419 DWLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIPK 470
            W + R + L         ++ Y  +++ L+ E   KGD   EG+++ALY+Y + V P+
Sbjct: 419 QWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALYDYAEMVAPE 477


>gi|319787286|ref|YP_004146761.1| exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1]
 gi|317465798|gb|ADV27530.1| Exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1]
          Length = 480

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 195/476 (40%), Positives = 278/476 (58%), Gaps = 9/476 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+ F+ YD ETFG D    R AQFA VR DR+ + ++     F +PADD LP P A  I
Sbjct: 1   MTDSFLFYDLETFGADPRRSRIAQFAAVRTDRELQVVDEPISLFVRPADDLLPSPVATLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI PQ ALR+G+ EAE + RI +  S P TC +GYN++RFDD Y R+  +RNF+D Y  
Sbjct: 61  TGIAPQHALREGLSEAEATARIVEEMSRPGTCTLGYNSLRFDDEYVRHTLFRNFFDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDVMR  +A  P+GI+WP R+DGATSFKL+ LALAN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVMRLAHALRPEGIEWPKREDGATSFKLEHLALANNVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ L  L+R+ +P+L++Y    R K     L+D   M P++HVS  + A+R   A +
Sbjct: 181 VYATIGLARLLRQAQPRLWDYALRMREKRHAASLLDTFAMNPVLHVSQRYPAARMCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+A HP   + VI  +L GD+    +    ++A RL+T   +L  G+  VP+KEVHLN+
Sbjct: 241 LPLAVHPDISNRVIVFDLDGDVDALLEQAPEEIADRLYTPVADLPPGVSRVPLKEVHLNR 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRF--KAIYNKPYTSSSQDVD 357
            P+L+P  + +   F+R GID +  L  +  LR           +           +DVD
Sbjct: 301 SPMLVPWGHLRAPDFQRLGIDPELALARVERLRAHGPELAEKARQVYARGARERGEEDVD 360

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
             LY GF  D DR++  ++  TAP  L +    F D RLPEL FRYRARN+P TL+  E+
Sbjct: 361 GALYSGFCGDGDRRLCVQVRATAPADLGSRAFEFRDPRLPELLFRYRARNWPETLTPDER 420

Query: 418 QDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
             W ++R++ L           E +  ++ +L   + GD  +  L++ L  + + +
Sbjct: 421 GRWDDYRRRRLLADSGLSEYTFETFFAEIATLRATHAGDGQRLVLLDQLEAWGREL 476


>gi|313106840|ref|ZP_07793049.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016]
 gi|310879551|gb|EFQ38145.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016]
          Length = 478

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/475 (41%), Positives = 285/475 (60%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M      YDYET G D   DRP Q AG+R D    +I      +C+P+DD LP P A  I
Sbjct: 1   MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+    G+ EA+F  R+H   + P TC+ GYN++RFDD  +R   YRNF+D Y  
Sbjct: 61  TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+D++R  YA  P+GIQWP   DG  S KL+ L  ANG+EH  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIR+++P+L++YLY  R+K+++   + +  + PLVHVSG F A R   +++
Sbjct: 180 VRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHPR ++++I C+L  D     +L +  L +RL+T  DEL +G +PVP+K++ +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R GI+ + C     LLRQ      D+  A+Y +   S+S D + 
Sbjct: 298 CPVVAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++    PEQL+    PF D RL ELFFRYRARNFP TL+  E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQ 417

Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W    +  L+       + +  ++  L++   E  G      ++ A  +Y   +
Sbjct: 418 QWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 470


>gi|303252408|ref|ZP_07338574.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307247643|ref|ZP_07529685.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302648867|gb|EFL79057.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306855855|gb|EFM88016.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 514

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 217/473 (45%), Positives = 302/473 (63%), Gaps = 6/473 (1%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M  +  F  YDYE+FG   ALDRPAQFAG+R D  +  I    +F+CK   DYLP PEAV
Sbjct: 1   MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+   +GV E EF+ RIH  FS PNTCI+GYNNIR+DD  +R  F+RNF+D Y
Sbjct: 61  MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  PDGI+W   ++G  +FKL++L  ANGI H NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+  LI++K+PKLF++ ++ R K ++ K+ID   MTPLVHVSGMFG +R+NTA
Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
            IAP+AWHP  ++ V+ C+LSGD+       + +L  RL+T  +EL +G+ PVP+K VH+
Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355
           N+CPI+ P      E+  R GID +RCLENL LL+           +    +     S +
Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V++ LYDGFF+  D+  M  +    P +L+   L F+D R+  L F YRAR++P TLS  
Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPRELAHHGLQFADERVEALLFHYRARHYPETLSRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           E+  W ++  + +  ++  ++   + SL   +  +  K  L+  L  Y   + 
Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472


>gi|307245526|ref|ZP_07527613.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307254482|ref|ZP_07536318.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258940|ref|ZP_07540671.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306853585|gb|EFM85803.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306862532|gb|EFM94490.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866964|gb|EFM98821.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 514

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 217/473 (45%), Positives = 303/473 (64%), Gaps = 6/473 (1%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M  +  F  YDYE+FG   ALDRPAQFAG+R D  +  I    +F+CK   DYLP PEAV
Sbjct: 1   MNKNLTFFFYDYESFGVGPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+   +GV E EF+ RIH  FS PNTCI+GYNNIR+DD  +R  F+RNF+D Y
Sbjct: 61  MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  PDGI+W   ++G  +FKL++L  ANGI H NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+  LI++K+PKLF++ ++ R K ++ K+ID   MTPLVHVSGMFG +R+NTA
Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
            IAP+AWHP  ++ V+ C+LSGD+       + +L  RL+T  +EL +G+ PVP+K VH+
Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355
           N+CPI+ P      E+  R GID +RCLENL LL+           +    +     S +
Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V++ LYDGFF+  D+  M  +    P++L+   L F+D R+  L F YRAR++P TLS  
Sbjct: 361 VETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           E+  W ++  + +  ++  ++   + SL   +  +  K  L+  L  Y   + 
Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472


>gi|152980617|ref|YP_001352252.1| exonuclease I [Janthinobacterium sp. Marseille]
 gi|151280694|gb|ABR89104.1| exodeoxyribonuclease I [Janthinobacterium sp. Marseille]
          Length = 476

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 191/477 (40%), Positives = 275/477 (57%), Gaps = 10/477 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T+ F+ +DYETFG     DRPAQFA +R D +  +I    + +CKPA+D+LPDP++  IT
Sbjct: 3   THTFLWHDYETFGIQPRRDRPAQFAAIRTDAELNEIGEPIMLYCKPANDFLPDPQSCLIT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ  L  GV E EF+  I +  S   T  +GYN IRFDD  +R +F+RN  D Y   
Sbjct: 63  GITPQTCLERGVPEHEFAAEIEKALSQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWD+LDV+R  YA  P+GI WP   DG  SF+L+ L   NGI H  AHDA +DV
Sbjct: 123 WQNSCGRWDILDVVRTAYALRPEGINWPKHPDGRPSFRLEQLTAENGIAHEAAHDALSDV 182

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  LIRE++PKLF++      K+++   I +    P +H++GM  A R   A++ 
Sbjct: 183 RATIALARLIRERQPKLFDFCLGLHKKDKVAAEIGLPLRRPFLHITGMIPAERGCIAVVW 242

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+A HP  K+ VI  +LS D      LD+  +  R+F+  D L +G+  +PIK +HLNK 
Sbjct: 243 PLAVHPTNKNEVIVWDLSVDPSELATLDAETIRMRMFSKADALPEGVSRLPIKTIHLNKS 302

Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           PI++  +     E  E+WGID    L +  +     ++   ++ ++ +P  +++  VD  
Sbjct: 303 PIVINNLKTLSAEMTEQWGIDIPTALRHAEVAAAAPDMTAIWQDVFYRPQEAAAD-VDED 361

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GF  + DR+ +  +   +PE L+     FSD RL E+ +RYRARNFPHTL+E+E+Q 
Sbjct: 362 LYGGFVGNNDRRTLQELRALSPEALAQAKPGFSDPRLEEIVWRYRARNFPHTLNEEEQQR 421

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
           W +HR   L         IE    ++  LS     DE  E ++ ALY+Y + + P  
Sbjct: 422 WEDHRVARLFDGEGGARTIETLFAEIDQLSE--TADERGEEILGALYDYAEAIAPSR 476


>gi|113970745|ref|YP_734538.1| exonuclease I [Shewanella sp. MR-4]
 gi|113885429|gb|ABI39481.1| Exodeoxyribonuclease I subunit C [Shewanella sp. MR-4]
          Length = 470

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 208/468 (44%), Positives = 287/468 (61%), Gaps = 5/468 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 +DYETFG   A DRPAQFAG+R D     I   E F+CK + DYLP PEA+ IT
Sbjct: 6   QPSIFWHDYETFGATPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ E EF  RIH  FS PNTC+ GYN++RFDD  +R  FYRNF D Y   
Sbjct: 66  GITPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGN+RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L  ANG+ H  AHDA +DV
Sbjct: 126 WQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  LI+EK+PKL++Y ++ R K  +   ID+ NM PL HVS    A +  T LIA
Sbjct: 186 YATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIA 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PV  HP  K+++I  NL+ D+    +LD  Q+  R++T   EL +  +P+P+K+VHLNKC
Sbjct: 246 PVTHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAEDELPIPVKQVHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P +           ER  ID     E    L+    LR++   ++      ++ D D  L
Sbjct: 306 PFITSAKILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLML 365

Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+  D+  M+ I  T P+ L+ L+L F D R+PE+ FRYRARN+P  L+++E Q 
Sbjct: 366 YSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEAQR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W    ++ L+    ++Y  KL++L  + + DE K+ L+ AL  YL+ +
Sbjct: 426 WRIFCQQRLSD---QDYLLKLENLLQDTEADEYKQKLLAALCHYLRGL 470


>gi|319425973|gb|ADV54047.1| Exodeoxyribonuclease I [Shewanella putrefaciens 200]
          Length = 470

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 211/468 (45%), Positives = 280/468 (59%), Gaps = 5/468 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 +DYETFG + A DRPAQFAG+R D     I   E F+CK A DYLP PEA+ IT
Sbjct: 6   QPSIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ E EF  RI   FS PNTC+ GYN++RFDD  +R  FYRNF D Y   
Sbjct: 66  GITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYARE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD++D++RA YAF PDGI W  +DDG+ SFKL+ L  ANG+ H  AHDA +DV
Sbjct: 126 WQNGNSRWDIIDLVRACYAFRPDGINWSLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  LIREK+PKL+ Y ++ R K  +   ID+ NM PL HVS    A    T LI+
Sbjct: 186 YATIAMAKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLIS 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVA HP  K++VI  NL+ D+    DL+  Q+  R++T+  EL +  +P+P+K++HLNKC
Sbjct: 246 PVAHHPTNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P +            R  ID     E    LR    LR++   ++     S++ D D  L
Sbjct: 306 PFITSAKILDDAQASRLNIDKAFAREQYKRLRNHPELREKLAQLFEHDGESTTVDPDLML 365

Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+  D+  M+ I  T P+ L+ L L F D R+PE+ FRYRARN+P  L ++E   
Sbjct: 366 YSGGFFSSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQESHR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W E  +  L     ++Y  KL++L      DE K+ L+ AL  YL+ +
Sbjct: 426 WREFCQNRLAD---QDYLLKLENLLQNTVDDENKQKLLAALCHYLREL 470


>gi|161501966|ref|YP_261869.2| exonuclease I [Pseudomonas fluorescens Pf-5]
          Length = 475

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 182/474 (38%), Positives = 278/474 (58%), Gaps = 13/474 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 YDYET G +   DRP Q AG+R D    +I+     +C+P+DD LP P A  IT
Sbjct: 1   MTSLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMIT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP +    G+ EA+F  R+H+  + P TC +GYN +RFDD  +R   YRNF+D Y   
Sbjct: 61  GITPGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYARE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDL+DV+R  YA  P GI WP       S KL+ L  ANGI+H  AHDA +DV
Sbjct: 121 WQGGNSRWDLIDVVRTAYALRPQGIVWPEEQGQ-VSLKLERLTAANGIDHGQAHDALSDV 179

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  L+R+K+P+L+++L+  R+K ++   + +  + P+VH+SG F A+R    ++ 
Sbjct: 180 RATIALARLVRDKQPRLYDWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAARHYIGVVL 237

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKC 300
           P+AWHPR ++++I C+L  D +   +LD+  L +RL+T  ++ L+G +PVP+K +H+N+C
Sbjct: 238 PLAWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRC 297

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           P++ P+   + E  +R  +D +        L + Q   RD+   IY     ++S D + Q
Sbjct: 298 PVVAPLSVLRSEDQQRLHLDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQQ 357

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF  D DR++ +++    P  L+    PF D RLPEL FRYRARNFP TL++ E++ 
Sbjct: 358 LYDGFIGDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQER 417

Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           WL   ++ L          +E ++  L+        D  +  +++   +Y+Q +
Sbjct: 418 WLVFCQQRLLDPQLGAPNTLESFRQGLEQ--SLLSADPMQRQVLDQWQDYVQAL 469


>gi|120599334|ref|YP_963908.1| exonuclease I [Shewanella sp. W3-18-1]
 gi|120559427|gb|ABM25354.1| Exodeoxyribonuclease I subunit C [Shewanella sp. W3-18-1]
          Length = 472

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 212/467 (45%), Positives = 281/467 (60%), Gaps = 5/467 (1%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
                +DYETFG + A DRPAQFAG+R D     I   E F+CK A DYLP PEA+ ITG
Sbjct: 9   ESIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILITG 68

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A   G+ E EF  RI   FS PNTC+ GYN++RFDD  +R  FYRNF D Y   W
Sbjct: 69  ITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREW 128

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWD++D++RA YAF PDGI WP +DDG+ SFKL+ L  ANG+ H  AHDA +DVY
Sbjct: 129 QNGNSRWDIIDLVRACYAFRPDGINWPLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDVY 188

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+A+  LIREK+PKL+ Y ++ R K  +   ID+ NM PL HVS    A    T LI+P
Sbjct: 189 ATIAMAKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLISP 248

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           VA HP  K++VI  NL+ D+    DL+  Q+  R++T+  EL +  +P+P+K++HLNKCP
Sbjct: 249 VAHHPTNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +            R  ID     E    LR    LR++   ++     S++ D D  LY
Sbjct: 309 FITSAKILDDAQASRLNIDKAFAREQYKRLRNHPELREKLAQLFEHDGESTTVDPDLMLY 368

Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
             GFF+  D+  M+ I  T P+ L+ L L F D R+PE+ FRYRARN+P  L ++E   W
Sbjct: 369 SGGFFSSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQESHRW 428

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            E  +  L     ++Y  KL++L      DE K+ L+ AL  YL+ +
Sbjct: 429 REFCQNRLAD---QDYLLKLENLLQNTVDDENKQKLLAALCHYLREL 472


>gi|165976088|ref|YP_001651681.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|307256692|ref|ZP_07538471.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|165876189|gb|ABY69237.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|306864740|gb|EFM96644.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 514

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 216/473 (45%), Positives = 301/473 (63%), Gaps = 6/473 (1%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M  +  F  YDYE+FG   ALDRPAQFAG+R D  +  I    +F+CK   DYLP PEAV
Sbjct: 1   MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+   +GV E EF+ RIH  FS PNTCI+GYNNIR+DD  +R  F+RNF+D Y
Sbjct: 61  MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  PDGI+W   ++G  +FKL++L  ANGI H NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+  LI++K+PKLF++ ++ R K ++ K+ID   MTPLVHVSGMFG +R+NTA
Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
            IAP+AWHP  ++ V+ C+LSGD+       + +L  RL+T  +EL +G+ PVP+K VH+
Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355
           N+CPI+ P      E+  R GID +RCLENL LL+           +    +     S +
Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V++ LYDGFF+  D+  M  +    P++L+   L F+D R+  L F YRAR++P TLS  
Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           E+  W ++  + +    + ++   +  L   +  +  K  L+  L  Y   + 
Sbjct: 421 EQIKWQKYCHQQIDAKSV-QFAEAIDILFQIHHDNPEKVKLLENLTAYAAQIA 472


>gi|152988725|ref|YP_001350220.1| exonuclease I [Pseudomonas aeruginosa PA7]
 gi|150963883|gb|ABR85908.1| exodeoxyribonuclease I [Pseudomonas aeruginosa PA7]
          Length = 478

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/475 (41%), Positives = 287/475 (60%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M      YDYET G D   DRP Q AG+R D    +I      +C+P+DD LP P A  I
Sbjct: 1   MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+    G+ EA+F  R+H   + P TC+ GYN++RFDD  +R   YRNF+D Y  
Sbjct: 61  TGITPQRLAERGLSEADFMTRVHAQLAHPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+D++R  YA  P+GIQWP   DG  S KL+ L  ANG+EH  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDMVRTAYALRPEGIQWP-EADGRVSLKLELLTAANGLEHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIR+++P+L++YLY  R+K+++   I +  + PLVHVSG F A R   +++
Sbjct: 180 VRATIALARLIRQRQPRLYDYLYQLRSKHRVLDQIHL--LQPLVHVSGRFSAERHFLSVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHPR ++++I C+L  D     +L + +L +RL+T  DEL +G +PVP+K++ +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLRADPAPLLELSAEELRRRLYTRRDELAEGELPVPLKQIQVNR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT-NLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E   R GID + C     LLRQ+     ++    Y++   ++S+D + 
Sbjct: 298 CPVVAPLSVLRAEDRLRTGIDVEACQRRAELLRQRQAAWTEKLALAYSEESFAASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ R  PEQL+    PF D RL ELFFRYRARNFP TLS  E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQLRRAEPEQLAREQWPFDDIRLQELFFRYRARNFPETLSPSERQ 417

Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W    +  L+       + +  ++  +++   E  G      ++ A  +Y   +
Sbjct: 418 QWEAFCRNRLSHEEFGAPNTLPAFEAAMEACRQEQGGTLP--AVLAAWRDYAGEL 470


>gi|307249878|ref|ZP_07531852.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858067|gb|EFM90149.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 514

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 216/473 (45%), Positives = 302/473 (63%), Gaps = 6/473 (1%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M  +  F  YDYE+FG   ALDRPAQFAG+R D  +  I    +F+CK   DYLP PEAV
Sbjct: 1   MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+   +GV E EF+ RIH  FS PNTCI+GYNNIR+DD  +R  F+RNF+D Y
Sbjct: 61  MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  PDGI+W + ++G  +FKL++L  ANGI H NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+  LI++K+PKLF++ ++ R K ++ K+ID   MTPLVHVSGMFG +R+NTA
Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
            IAP+AWHP  ++ V+ C+LSGD+       + +L  RL+T  +EL +G+ PVP+K VH+
Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355
           N+CPI+ P      E+  R GID +RCLENL LL+           +    +     S +
Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V++ LYDGFF+  D+  M  +    P++L+   L F+  R+  L F YRAR++P TLS  
Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFAGERVEALLFHYRARHYPETLSRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           E+  W ++  + +    + ++   + SL   +  +  K  L+  L  Y   + 
Sbjct: 421 EQIKWQKYCHQQIDAKSV-QFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472


>gi|296391019|ref|ZP_06880494.1| exonuclease I [Pseudomonas aeruginosa PAb1]
          Length = 480

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/472 (41%), Positives = 284/472 (60%), Gaps = 13/472 (2%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               YDYET G D   DRP Q AG+R D    +I      +C+P+DD LP P A  ITGI
Sbjct: 6   SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ EA+F  R+H   + P TC+ GYN++RFDD  +R   YRNF+D Y   W 
Sbjct: 66  TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            GNSRWDL+D++R  YA  P+GIQWP   DG  S KL+ L  ANG+EH  AHDA +DV A
Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  LIR+++P+L++YLY  R+K+++   + +  + PLVHVSG F A R   +++ P+
Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVVLPL 242

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHPR ++++I C+L  D     +L +  L +RL+T  DEL +G +PVP+K++ +N+CP+
Sbjct: 243 AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P+   + E  +R GI+ + C     LLRQ      D+  A+Y +   S+S D + QLY
Sbjct: 303 VAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF  D DR++ +++    PEQL+    PF D RL ELFFRYRARNFP TL+  E+Q W 
Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVDERQQWE 422

Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
              +  L+       + +  ++  L++   E  G      ++ A  +Y   +
Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472


>gi|315126831|ref|YP_004068834.1| exonuclease I [Pseudoalteromonas sp. SM9913]
 gi|315015345|gb|ADT68683.1| exonuclease I [Pseudoalteromonas sp. SM9913]
          Length = 481

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 215/472 (45%), Positives = 301/472 (63%), Gaps = 8/472 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               +DYET+G     D+P+QFAGVR D     I    + +CKP  DYLP PEA  ITGI
Sbjct: 10  TIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A++ G+VEAEF  +IH  FSVPNTC+ GYN+IRFDD  SR  FYRNFYD Y   + 
Sbjct: 70  TPQVAMQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYK 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N NSRWD++D++RA YA  P+GI+WP ++DG+ SFKL+ L +ANGIEH  AHDA +DV A
Sbjct: 130 NNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTA 189

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  LI+EK+PKL+ + +  RNK  L +L+D+ NMTPLVH S    A++  T  +AP+
Sbjct: 190 TIALAKLIKEKQPKLYHFFFSLRNKKALAELVDVFNMTPLVHTSSRIPATQGCTTWVAPM 249

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           ++HP  K++VI  +L+ + +V  DL+  QL KRL+T   +L +G +PV +K VHLNKCPI
Sbjct: 250 SFHPVNKNAVICFDLTQNPQVLLDLNVEQLRKRLYTKRIDLAEGDLPVGLKLVHLNKCPI 309

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361
           L P      E+  R GID ++CL NL +L+  T LRD+   ++N+    S++ +VD  LY
Sbjct: 310 LAPAKTLLPENAARLGIDREQCLANLAILKANTELRDKVTEVFNEQGDYSATTNVDYLLY 369

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF +  D+     I    PE L++L L F D +   L FRYRARN+P TL+++E   W 
Sbjct: 370 DGFTSHADKAKFAIIRDAKPEDLASLKLEFEDPKFNTLLFRYRARNWPQTLNQQELDQWR 429

Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ +  L           +++   L++L+ E+   E    ++ ALY Y Q +
Sbjct: 430 QYCQSKLMHGEDQPSISAQDFMITLENLAHEHDDSEKNLTILKALYNYAQSM 481


>gi|71280482|ref|YP_268744.1| exonuclease I [Colwellia psychrerythraea 34H]
 gi|71146222|gb|AAZ26695.1| exodeoxyribonuclease I [Colwellia psychrerythraea 34H]
          Length = 487

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 201/475 (42%), Positives = 297/475 (62%), Gaps = 11/475 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               + +DYET+G +   D+P+QFAG+R D     I   E+F+C P  DYLP PEA  +T
Sbjct: 12  QPSILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEACLVT 71

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKA R+G+ EAEF+ RIH  F+ PNTC+ GYN+IRFDD  +R + YRNFYD Y   
Sbjct: 72  GITPQKAQREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYDPYARE 131

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWP---SRDDGATSFKLQDLALANGIEHVNAHDAK 178
           W NGNSRWD++D++RA YA  P+GI WP      +   SF+L+ L  AN I H  AHDA 
Sbjct: 132 WQNGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEAAHDAM 191

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           +DVYAT+A+  LI+EK+PKL++++++ +NKNQ++ LI+   MTP+VH S    ++   T+
Sbjct: 192 SDVYATIAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVHTSSKVSSAHGCTS 251

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
             APV++HP  K++VI  +L+ D+     L S ++  RL+T +D+L    +P+P+K +H+
Sbjct: 252 WFAPVSYHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLAPDELPIPVKLIHV 311

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           NKCP++ P      E+ ER  I    CL+NL LLR+   LRD+   ++      +     
Sbjct: 312 NKCPVIAPAKTLLPENAERLAIPRDVCLDNLALLRKHAELRDKLSDVFATSDFDNDDVDA 371

Query: 358 SQ--LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
            Q      FF+  D+  MD +   +PEQL+     F D RL  L FRYRARN+P+TLS +
Sbjct: 372 EQALYGGSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVLLFRYRARNYPYTLSTE 431

Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
           E+Q W ++ +  L         ++E+  K+++L+ E++ D+ K  ++ ALYE+LQ
Sbjct: 432 EQQKWQQYCQNKLQYGGKGILSLDEFMMKIENLAHEHETDKAKMSVLKALYEFLQ 486


>gi|170726402|ref|YP_001760428.1| exonuclease I [Shewanella woodyi ATCC 51908]
 gi|169811749|gb|ACA86333.1| Exodeoxyribonuclease I [Shewanella woodyi ATCC 51908]
          Length = 470

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 210/468 (44%), Positives = 288/468 (61%), Gaps = 5/468 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T+    +DYETFG + A DRP+QFAG+R D     I   E F+CK A+DYLP PEA+ IT
Sbjct: 6   TSTIFWHDYETFGANPAKDRPSQFAGIRTDFDLNIIGEPETFYCKVANDYLPSPEAILIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   GV EAEF  ++H  FS PNTC+ GYN+IRFDD  SR  FYRNFYD Y   
Sbjct: 66  GITPQLANLKGVPEAEFMGKVHALFSQPNTCVAGYNSIRFDDEVSRYGFYRNFYDPYARE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWD++D++RA YAF P+GI+WP ++DG+ SFKL+ L  ANG+ H  AHDA +DV
Sbjct: 126 WQQGNSRWDIIDLVRACYAFRPEGIEWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ +  LI+EK+PKLF+Y ++ R K ++ KLID+ NM PL+HVS    +     ++IA
Sbjct: 186 YATIDMAKLIKEKQPKLFDYFFNLRKKQEVSKLIDVLNMQPLIHVSSKISSLHGCASIIA 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVA H   K+++I  NL+ D+    +LD  Q+ +R++T   +L    +P+ +K+VH+NKC
Sbjct: 246 PVAHHSSNKNAIICVNLAMDISPLIELDVEQIRERMYTRRADLAPDELPISVKQVHINKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P +        E+  R  ID     E    L+Q   LR++  ++++  Y S S D D QL
Sbjct: 306 PFIASTKILTDENAARLDIDKAFAREQYKRLKQHPELREKLVSVFDVEYESDSNDPDLQL 365

Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+  D+  M+ I  T P+ L+ L L F D RL E+ FRYR RN+P    + E   
Sbjct: 366 YSGGFFSSADKAKMEMIRHTLPQNLAALELHFDDSRLKEMLFRYRGRNYPEFFDDSESMK 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W E  +  L      +Y  KL++L  E    E K+ L+ AL  YL  +
Sbjct: 426 WREFCQSRLND---PDYMFKLENLVNETSQSEDKQKLLTALCHYLSNL 470


>gi|116052350|ref|YP_792661.1| exonuclease I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587571|gb|ABJ13586.1| exodeoxyribonuclease I [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 480

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/472 (41%), Positives = 284/472 (60%), Gaps = 13/472 (2%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               YDYET G D   DRP Q AG+R D    +I      +C+P+DD LP P A  ITGI
Sbjct: 6   SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ EA+F  R+H   + P TC+ GYN++RFDD  +R   YRNF+D Y   W 
Sbjct: 66  TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            GNSRWDL+D++R  YA  P+GIQWP   DG  S KL+ L  ANG+EH  AHDA +DV A
Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  LIR+++P+L++YLY  R+K+++   + +  + PLVHVSG F A R   +++ P+
Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVVLPL 242

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHPR ++++I C+L  D     +L +  L +RL+T  DEL +G +PVP+K++ +N+CP+
Sbjct: 243 AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P+   + E  +R GI+ + C     LLRQ      D+  A+Y +   S+S D + QLY
Sbjct: 303 VAPLSVLRGEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF  D DR++ +++    PEQL+    PF D RL ELFFRYRARNFP TL+  E+Q W 
Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWE 422

Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
              +  L+       + +  ++  L++   E  G      ++ A  +Y   +
Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472


>gi|107100101|ref|ZP_01364019.1| hypothetical protein PaerPA_01001122 [Pseudomonas aeruginosa PACS2]
          Length = 480

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/472 (41%), Positives = 284/472 (60%), Gaps = 13/472 (2%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               YDYET G D   DRP Q AG+R D    +I      +C+P+DD LP P A  ITGI
Sbjct: 6   SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ EA+F  R+H   + P TC+ GYN++RFDD  +R   YRNF+D Y   W 
Sbjct: 66  TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            GNSRWDL+D++R  YA  P+GIQWP   DG  S KL+ L  ANG+EH  AHDA +DV A
Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  LIR+++P+L++YLY  R+K+++   + +  + PLVHVSG F A R   +++ P+
Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVVLPL 242

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHPR ++++I C+L  D     +L +  L +RL+T  DEL +G +PVP+K++ +N+CP+
Sbjct: 243 AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P+   + E  +R GI+   C +   LLRQ      D+  A+Y +   S+S D + QLY
Sbjct: 303 VAPLSVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF  D DR++ +++    PEQL+    PF D RL ELFFRYRARNFP TL+  E+Q W 
Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNAAERQQWE 422

Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
              +  L+       + +  ++  L++   E  G      ++ A  +Y   +
Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472


>gi|332535945|ref|ZP_08411647.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034679|gb|EGI71232.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis ANT/505]
          Length = 481

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 210/472 (44%), Positives = 303/472 (64%), Gaps = 8/472 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               +DYET+G     D+P+QFAG+R D     I    + +CKP  DYLP PEA  ITGI
Sbjct: 10  TIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A++ G+VEAEF  +IH  FSVPNTC+ GYN+IRFDD  SR  FYRNFYD Y   + 
Sbjct: 70  TPQVAMKKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYK 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N NSRWD++D++RA YA  P+GI+WP ++DG+ SFKL+ L +ANGIEH  AHDA +DV A
Sbjct: 130 NNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTA 189

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  LI+EK+PKL+ + +  RNK  L +L+D+ NMTPLVH +    A++  T+ +AP+
Sbjct: 190 TIALAKLIKEKQPKLYNFFFGLRNKKALAELVDVFNMTPLVHTTSRIPATQGCTSWVAPM 249

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           ++HP  K++VI  +L+ + +V  DL+  +L KRL+T   +L +  +PV +K VHLNKCPI
Sbjct: 250 SFHPVNKNAVICFDLTQNPQVLIDLNVEELRKRLYTKRVDLAEDDLPVGLKLVHLNKCPI 309

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361
           L P      E+  R GID ++CL NL +L+  T+LRD+   ++N+    S++ +VD  LY
Sbjct: 310 LAPAKTLLPENAARLGIDREQCLANLAILKANTDLRDKVTEVFNEQGDYSATTNVDYLLY 369

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF +  D+     I    P++L+ L L F D++   L FRYRARN+P TL+++E   W 
Sbjct: 370 DGFTSHADKAKFAIIRDAKPDELAGLKLDFEDKKFNTLLFRYRARNWPETLNQQELDQWR 429

Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ +  L           +++   L++L+ E+   E    ++ ALY Y Q +
Sbjct: 430 QYCQNKLMHGEDQPSINAQDFMITLENLAHEHDDSEKNLTILKALYNYAQSM 481


>gi|254239017|ref|ZP_04932340.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719]
 gi|126170948|gb|EAZ56459.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719]
          Length = 480

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/472 (41%), Positives = 284/472 (60%), Gaps = 13/472 (2%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               YDYET G D   DRP Q AG+R D    +I      +C+P+DD LP P A  ITGI
Sbjct: 6   SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ EA+F  R+H   + P TC+ GYN++RFDD  +R   YRNF+D Y   W 
Sbjct: 66  TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            GNSRWDL+D++R  YA  P+GIQWP   DG  S KL+ L  ANG+EH  AHDA +DV A
Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  LIR+++P+L++YLY  R+K+++   + +  + PLVHVSG F A R   +++ P+
Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVVLPL 242

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHPR ++++I C+L  D     +L +  L +RL+T  DEL +G +PVP+K++ +N+CP+
Sbjct: 243 AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P+   + E  +R GI+ + C     LLRQ      D+  A+Y +   S+S D + QLY
Sbjct: 303 VAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF  D DR++ +++    PEQL+    PF D RL ELFFRYRARNFP TL+  E+Q W 
Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWE 422

Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
              +  L+       + +  ++  L++   E  G      ++ A  +Y   +
Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472


>gi|83746387|ref|ZP_00943439.1| Exodeoxyribonuclease I [Ralstonia solanacearum UW551]
 gi|207744660|ref|YP_002261052.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum IPO1609]
 gi|83726928|gb|EAP74054.1| Exodeoxyribonuclease I [Ralstonia solanacearum UW551]
 gi|206596067|emb|CAQ62994.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum IPO1609]
          Length = 489

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 187/477 (39%), Positives = 280/477 (58%), Gaps = 11/477 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T+ F+ +DYETFG     DRPAQFAG+R D +  +I      FC+P+ D+LPDP +  IT
Sbjct: 14  THTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPASCLIT 73

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+  R G+ E  F++ I +  + P T  +GYN+IRFDD  +R++F+RN  D Y   
Sbjct: 74  GITPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYARE 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  +A  PDG++WP   DG  SFKL+ L+ ANG+ H  AHDA +DV
Sbjct: 134 WQNECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLLHEAAHDALSDV 193

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL   +R+ +P+LF++ +  R K ++   I  +   PL+HVSGM+G  R   A++ 
Sbjct: 194 RATIALARRVRDAQPRLFDFCFALRKKERVLAEIG-ETPRPLLHVSGMYGVERGCMAVVW 252

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+ WHP  K+ ++  +L+ D     DL    + +RLFT   EL +G   +P+K +H+NK 
Sbjct: 253 PLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINKA 312

Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           PI++  +   +    ERWG+D      +    +   ++R+ ++ +Y +        VD  
Sbjct: 313 PIVIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVYVRELDPIED-VDQN 371

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GF A+ DR+ ++ +   + EQL+ L+  F+D RLPEL FRYRARNFP TL+E E + 
Sbjct: 372 LYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEDEYEQ 431

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIP 469
           W + R + L          E +  +LQ L  E    GD   + ++  LY+Y Q ++P
Sbjct: 432 WEQLRAERLFEGSGGYLTFEAFGERLQQLGAEAAESGDARAQNILQDLYDYAQQIVP 488


>gi|308049114|ref|YP_003912680.1| exodeoxyribonuclease I subunit C [Ferrimonas balearica DSM 9799]
 gi|307631304|gb|ADN75606.1| Exodeoxyribonuclease I subunit C [Ferrimonas balearica DSM 9799]
          Length = 470

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 210/469 (44%), Positives = 288/469 (61%), Gaps = 7/469 (1%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              + +DYET+G DVA DRPAQFAG+R D     IE    ++C+   DYLP PEA+ +TG
Sbjct: 5   ETLLWHDYETWGADVARDRPAQFAGIRTDLDLNIIEEPVEYYCRLPADYLPKPEAMLVTG 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQKA R G VEA+F  R+H+  + PNTC +GYN+IRFDD  +R   YRNF+D Y   W
Sbjct: 65  ITPQKANRLGEVEAQFIARVHEQMARPNTCTVGYNSIRFDDEITRYALYRNFFDPYAREW 124

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWD++D++RA YA  P+GI WP R+DGA SFKL+ L  ANGI H +AHDA +DV 
Sbjct: 125 QNGNSRWDIIDLVRACYALRPEGIVWPEREDGAPSFKLEHLTAANGIGHDSAHDAVSDVK 184

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+AL  LI+  +PKL+E+ +  RNK      IDI  + PL+HVS  F AS+   +L+ P
Sbjct: 185 ATIALAKLIKTTQPKLYEWAFRLRNKRFAASQIDILALKPLLHVSSRFPASQGCASLVLP 244

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           +AWHP  K++V   +L+ D     + D   L  +L+    +  +G   VP+K VH+NK P
Sbjct: 245 MAWHPENKNAVACVDLAMDPTPLLEWDIETLKAKLYQKAVDRTEGEPRVPVKLVHMNKSP 304

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY---NKPYTSSSQDVDS 358
            + P    +  + ER G+D   C E+  LLRQ               + P      + D 
Sbjct: 305 FIAPASSLEDANAERLGLDKAACREHYKLLRQHHAEVREKLHGLFSDDAPPQREPDNPDV 364

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLY GFF++ DR  M+ +  TAPE L+ L   F D RLP+LFFRYRARN+P+TLSE E++
Sbjct: 365 QLYGGFFSEADRAQMELVRSTAPEHLAALEPQFVDPRLPKLFFRYRARNYPNTLSEAEQR 424

Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W++H ++ L  +   +Y + L+ L  ++  DE K  L+ AL  YLQ +
Sbjct: 425 RWVQHCQQSLADA---DYVHNLEQLFEQHSSDEEKMKLLTALGHYLQSL 470


>gi|302608296|emb|CBW44754.1| Exodeoxyribonuclease I, Exonuclease I, DNA
           deoxyribophosphodiesterase, dRPase [Marinobacter
           hydrocarbonoclasticus]
          Length = 482

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 201/480 (41%), Positives = 282/480 (58%), Gaps = 11/480 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F  +DYETFG D   DRP+QFAGVR D     IE   V +CKPADDYLP PEA  I
Sbjct: 1   MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQKAL DG  EAEF  +I++ FS P TC +GYN++RFDD  +R+  YRN  D Y  
Sbjct: 61  TGITPQKALEDGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWD++D++R  YA  P+GI WP ++DG+ SF+L++L +ANGI H  AHDA +D
Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGIHWPRKEDGSPSFRLEELTVANGIAHEAAHDAMSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+A+  LI+EK+PKLF+++ + ++K+  R+++D   M P+ H+S  + A+R   AL+
Sbjct: 181 VLATIAVAKLIKEKQPKLFDFVLNNKDKHSARQMLDTAAMKPVFHISAKYPATRGCCALV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
           AP+A     K+ VI  +L  D     +    ++ +R+FTS  EL +G+   P+K V LNK
Sbjct: 241 APLAESLSNKNQVIVYDLREDPEALINASVEEIRERVFTSQAELGEGVSRFPLKGVQLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDH---KRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-QD 355
           CP+L P         ER             NL  LR+  +L  R    + + +  S   D
Sbjct: 301 CPVLAPATMLSTLSQERLAELELDGDVLRANLAKLRKAPDLPARIAQAFEQDFQGSDLTD 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
            D QLY G F     +     L T P E L+   + F D RLPE+ FRYRARN+P TL  
Sbjct: 361 PDEQLYAGGFISKTDREKLNWLLTQPVETLAEQEVRFEDARLPEMLFRYRARNYPDTLIG 420

Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           +E + W + R + L +       +E Y  +LQ L+ + +    K+ ++  L+ Y + +IP
Sbjct: 421 EEMERWEQFRTERLMQPKKGWRSLEAYGRELQRLASDPELTPKKQQVLEDLHLYGESLIP 480


>gi|89900857|ref|YP_523328.1| exonuclease I [Rhodoferax ferrireducens T118]
 gi|89345594|gb|ABD69797.1| Exodeoxyribonuclease I subunit C [Rhodoferax ferrireducens T118]
          Length = 485

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 184/480 (38%), Positives = 276/480 (57%), Gaps = 14/480 (2%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + F+ +DYETFG +   DRPAQFA +R D +   I +  + +C+PA D+LPDP+A  ITG
Sbjct: 8   HTFLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDPQACLITG 67

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ  L  G+ E +F+ +I Q FS+P T  +GYN IRFDD  +R +F+RN  D Y   W
Sbjct: 68  ITPQLCLEKGIPEYQFAAQIEQAFSLPGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREW 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N   RWDLLDV+R  YA  PDG++WP   +G  SFKL DL+ ANG+ H  AHDA +DV 
Sbjct: 128 QNDCGRWDLLDVVRTAYALRPDGMEWPLNAEGKPSFKLTDLSAANGLLHEAAHDALSDVR 187

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKL----IDIQNMTPLVHVSGMFGASRSNTA 238
           AT+AL  LI+  +PKLF++ +    K+++         +    P +H+SGMF   R   A
Sbjct: 188 ATIALARLIKTAQPKLFDFCFGLHKKDRVMAELGLPTTLTQARPFLHISGMFAPERGCLA 247

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
           L+ P+A HP  K+ ++  +L+ D R    +++ Q+  RLFT   +L +G+  +P+K +HL
Sbjct: 248 LMWPLAMHPANKNELLAWDLAFDPRELAQMNAEQIRLRLFTKTADLPEGVQRLPVKSIHL 307

Query: 298 NKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
           NK P ++           +RWG++    L N    +   ++   + A++ K   +++ DV
Sbjct: 308 NKSPTVIGNYKTLSSAMAQRWGLNLDAQLANAAHAQALPDMSGIWPAVF-KRPAAATPDV 366

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D  LY GF  + DR+ ++ + +   ++L++    F D RL EL +RYRARNFP +LS  E
Sbjct: 367 DEDLYGGFVGNADRRRLNDLRQLKAQELASARPAFDDARLTELLWRYRARNFPQSLSADE 426

Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
              W  HR   L         IE+   +L SL+     DE  E ++ ALY+Y + + P+ 
Sbjct: 427 LARWEAHRSARLFDGEGGALTIEQLFEELDSLAE--SADERGEAILGALYDYAELIAPQR 484


>gi|15599512|ref|NP_253006.1| exonuclease I [Pseudomonas aeruginosa PAO1]
 gi|9950540|gb|AAG07704.1|AE004848_3 exodeoxyribonuclease I [Pseudomonas aeruginosa PAO1]
          Length = 480

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 196/472 (41%), Positives = 284/472 (60%), Gaps = 13/472 (2%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               YDYET G D   DRP Q AG+R D    +I      +C+P+DD LP P A  ITGI
Sbjct: 6   SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ EA+F  R+H   + P TC+ GYN++RFDD  +R   YRNF+D Y   W 
Sbjct: 66  TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            GNSRWDL+D++R  YA  P+GIQWP   DG  S KL+ L  ANG+EH  AHDA +DV A
Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  LIR+++P+L++YLY  R+K+++   + +  + PLVHVSG F A R   +++ P+
Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVVLPL 242

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHPR ++++I C+L  D     +L +  L +RL+T  DEL +G +PVP+K++ +N+CP+
Sbjct: 243 AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P+   + E  +R GI+   C +   LLRQ      D+  A+Y +   S+S D + QLY
Sbjct: 303 VAPLSVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF  D DR++ +++    PEQL+    PF D RL ELFFRYRARNFP TL+  E+Q W 
Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWE 422

Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
              +  L+       + +  ++  L++   E  G      ++ A  +Y   +
Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472


>gi|157375752|ref|YP_001474352.1| exonuclease I [Shewanella sediminis HAW-EB3]
 gi|157318126|gb|ABV37224.1| Exodeoxyribonuclease I [Shewanella sediminis HAW-EB3]
          Length = 470

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 211/467 (45%), Positives = 289/467 (61%), Gaps = 5/467 (1%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
                +DYETFG + A DRP+QFAG+R D     I     F+CK A+DYLP PEA+ ITG
Sbjct: 7   PSIFWHDYETFGANPAKDRPSQFAGIRTDMDLNIIGDPVTFYCKVANDYLPSPEAILITG 66

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A   G+ EAEF  ++H  FS PNTC+ GYN+IRFDD  SR  FYRNFYD Y   W
Sbjct: 67  ITPQLANLKGIPEAEFMAKVHDLFSQPNTCVAGYNSIRFDDEVSRYGFYRNFYDPYAREW 126

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             GNSRWD++D++RA YAF PDGI+WP ++DG+ SFKL+ L  AN + H  AHDA +DVY
Sbjct: 127 QQGNSRWDIIDLVRACYAFRPDGIEWPVKEDGSPSFKLEHLTQANDLSHEKAHDAMSDVY 186

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  LI++K+PKLF+Y +  R K ++ KLID+ NM PLVHVS    +    T +IAP
Sbjct: 187 ATIDMAKLIKQKQPKLFDYYFTLRRKQEVSKLIDVLNMQPLVHVSSKISSLHGCTTIIAP 246

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           VA H   K+++I  NL+ D+    +L   Q+ +R++T   +L +  +P+ +K++H+NKCP
Sbjct: 247 VAHHSTNKNAIICVNLAMDISPLIELSVDQIRERMYTRRADLAEDELPISVKQIHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +        E+ ER  ID     E   LL+Q   LR++  A+++  Y S S D D QLY
Sbjct: 307 FIASAKTLSDENAERLNIDKAFAREQFKLLKQHPELREKLVAVFDVEYESGSTDPDLQLY 366

Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
             GFF+  D++ M+ I  T+P+ L+ L L F D RL E+ FRYR RN+P T  E E   W
Sbjct: 367 SGGFFSSADKEKMEIIRHTSPQNLAALELEFDDSRLKEMLFRYRGRNYPETFDEMESMRW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            E  +  L      +Y  KL++L  E   +E K+ L+ AL  YL  +
Sbjct: 427 REFCQARLND---PDYMLKLENLMNETAQNEDKQKLLTALCHYLSNL 470


>gi|167855672|ref|ZP_02478429.1| exodeoxyribonuclease I [Haemophilus parasuis 29755]
 gi|167853190|gb|EDS24447.1| exodeoxyribonuclease I [Haemophilus parasuis 29755]
          Length = 516

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 218/472 (46%), Positives = 299/472 (63%), Gaps = 5/472 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG D A DRPAQFAG+R D  +  I    +F+C+  +DYLP PEAV +TGI
Sbjct: 5   TFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGI 64

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ   + G+ E EF+ RIH  FS PNTC++GYNNIR+DD  +R  F+RNF+D Y +SW 
Sbjct: 65  TPQLCNQQGLPEPEFAARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 124

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLDV+RA YA  P+GI+W   D+G  SFKL++L  ANGI H NAHDA ADVYA
Sbjct: 125 NGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFKLENLTKANGIAHDNAHDAMADVYA 184

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI++K+PKLF++    R K  L ++ID+  MTPLVHVSGM G  R NTA + P+
Sbjct: 185 TIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAWVVPL 244

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           AWHP  +++VI C+LSG++    +  S  L +RL+T   EL+  GL  VP+K VH+NKCP
Sbjct: 245 AWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCP 304

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQDVDSQ 359
           IL P      E+  R GID + CLENL LL+ Q           +  +    +S ++++ 
Sbjct: 305 ILAPAKTLLSENATRLGIDRQACLENLKLLKSQKSLVREKVIDILSEERNYPASNNIETT 364

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGFF   D+  M  +    PE+L+   L FSD R+  L F YRAR++  TL+  E+  
Sbjct: 365 LYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPRIEPLLFHYRARHYSETLTRAEQVR 424

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
           W ++  + L  ++ E ++  +  LS +Y  +  K  L+  L  Y   ++  +
Sbjct: 425 WQKYCYQQL-ETKAEAFEQAVDLLSAQYHDNSEKIKLLTDLTAYAAQLMQPK 475


>gi|53803521|ref|YP_114798.1| exonuclease I [Methylococcus capsulatus str. Bath]
 gi|53757282|gb|AAU91573.1| exodeoxyribonuclease I [Methylococcus capsulatus str. Bath]
          Length = 478

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/473 (38%), Positives = 263/473 (55%), Gaps = 9/473 (1%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F  YD ETFG D A DR AQFAG+R D ++  I   +V +C+P+DD +P P+A  +TG
Sbjct: 5   PSFYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVTG 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A   GV E+ F   IH+ F  P TC++GYN +RFDD   R+ FYRN YD Y   W
Sbjct: 65  ITPQYAAELGVPESAFIATIHRIFMRPGTCVLGYNTLRFDDEMLRHAFYRNLYDPYAREW 124

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             GNSRWD++D+ R   A  PDGI+WP    G+  FKL+ LA ANGI H +AHDA +DV 
Sbjct: 125 KGGNSRWDVIDLARLTQALRPDGIEWPRDSLGSPVFKLERLAAANGIRHESAHDALSDVR 184

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+A   LI E++P+LF++  + R K  + +L+ +    P++HVS  F ASR   A + P
Sbjct: 185 ATVAFARLIAERQPRLFQFALESRAKGAVERLLALGAWQPVLHVSEKFSASRHCIACVLP 244

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKCP 301
           +  HPR    VI  +L+ D     DL   ++ +RLFT   EL      +P+K VH N+CP
Sbjct: 245 LCRHPRIATRVIVFDLASDPAQLSDLSVDEIRRRLFTPSAELPAATGRLPLKGVHTNRCP 304

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK---AIYNKPYTSSSQDVDS 358
           +++P+   +    ER GID   C      L+                +  + ++S     
Sbjct: 305 VVVPMSALRPADGERLGIDAVLCRRRARWLQDHAEDIIPKISAAFEVDASFEAASDPELM 364

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
               GF  D DR+ +D++ R  P+QL+     F D R  EL FR+RARNFP TL+ +E++
Sbjct: 365 LYRGGFIPDADRRALDQVHRLTPDQLAHYRPRFVDGRFDELLFRFRARNFPETLNAEERE 424

Query: 419 DWLEHRKKMLTRS----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W   R+  L        + E+ +++  L  + + D GK  +++AL  Y + +
Sbjct: 425 RWTAFRRARLAGIGGGLSLAEFFSRIDRLRSQ-ESDAGKRAILDALEVYGRNL 476


>gi|92115139|ref|YP_575067.1| exonuclease I [Chromohalobacter salexigens DSM 3043]
 gi|91798229|gb|ABE60368.1| Exodeoxyribonuclease I subunit C [Chromohalobacter salexigens DSM
           3043]
          Length = 495

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/486 (39%), Positives = 284/486 (58%), Gaps = 18/486 (3%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+ +DYETFG D   DRPAQFA +R D  +  +     F+CKPADD+LP P+A  ITG
Sbjct: 8   PTFLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHPQACLITG 67

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A R G+ E EF+ RIH   SVP TC +GYN +RFDD  SR++FYRNF D Y   W
Sbjct: 68  ITPQAARRRGLAEIEFAARIHAEMSVPGTCSLGYNTLRFDDEVSRHLFYRNFIDPYSREW 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWDL+DV+R  +A  PDGI+WP+R+DGA SF+L+DL  ANGIEH  AHDA ADV 
Sbjct: 128 QNGNSRWDLIDVVRTYHALRPDGIEWPTREDGAPSFRLEDLTAANGIEHAGAHDALADVR 187

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ L  L++ +  +LFEYL   R+K  + +++DIQ   P++HVS  + ASR  +AL+ P
Sbjct: 188 ATIELARLLKARNAQLFEYLLKLRDKRTVARMLDIQARKPMLHVSRRYPASRGCSALVVP 247

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           +A HP   + VI  +LS D      +++ Q+ +R+F S DEL +G   +P+K +H+NK P
Sbjct: 248 LAEHPSNPNGVIVYDLSVDPSPLLSMEAAQIRERVFASADELAEGEARIPLKVIHINKSP 307

Query: 302 ILMPIDYCKKEHFE----------RWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS 351
           ++MP    K               R G+D   C  +   L+   ++  +   ++ +   +
Sbjct: 308 VIMPAASLKDVDGPQRGEYGALVARLGLDMAACRRHWKQLQAAPDVAAKAAEVFAEGPGA 367

Query: 352 SSQDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
              D D  LY  GFF+  DR+ M R        L+  +  F D RL E+ FR RARN+P 
Sbjct: 368 PPSDPDLMLYSGGFFSPADRREMQRAREMPAWDLAEASFAFQDPRLEEMLFRLRARNYPD 427

Query: 411 TLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
           TLS +E+  W  +R   +  +      +  +  +++ L  +   D+ +  ++  L  +++
Sbjct: 428 TLSSEEQAQWEAYRWARMNDAEVASLTLTGFAREIERL-NQVPLDDAQRQVLEELVMHVE 486

Query: 466 WVIPKE 471
            ++P +
Sbjct: 487 AMMPPQ 492


>gi|121604837|ref|YP_982166.1| exonuclease I [Polaromonas naphthalenivorans CJ2]
 gi|120593806|gb|ABM37245.1| Exodeoxyribonuclease I subunit C [Polaromonas naphthalenivorans
           CJ2]
          Length = 482

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 184/480 (38%), Positives = 277/480 (57%), Gaps = 14/480 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ F+ +DYETFG +   DRPAQFAG+R D +  +I    + +C+PA+DYLPDPE+  +T
Sbjct: 3   SHTFLWHDYETFGLNTRRDRPAQFAGIRTDAELNEIGEPLMIYCQPANDYLPDPESCVLT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ  L+ GV E  F+ RI Q  + P T  +GYN IRFDD  +R++F+RN  D Y   
Sbjct: 63  GITPQHCLQHGVPEHAFAARIEQVLAQPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYGRE 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  YA  PDGI WP ++DG  SFKL+DLA ANG+ H  AHDA +DV
Sbjct: 123 WQNECGRWDLLDVVRMAYALRPDGIVWPLKEDGKPSFKLEDLARANGLLHETAHDALSDV 182

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSNT 237
            AT+AL  L+R  +P+LF++      K ++   +      +   P +HVSGMF A R   
Sbjct: 183 RATIALARLVRTAQPRLFDFCLGLHKKARVSAELGLPATARMARPFLHVSGMFPAERGCL 242

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296
           A++ P+A HP  K+ V+  +L+ D      LD   L  RLF+   +L +G+  +PIK VH
Sbjct: 243 AVMFPLATHPANKNEVLAWDLAHDPSELPLLDVATLRLRLFSKSADLPEGVQRLPIKSVH 302

Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           LNK P+++  +         RWG+D ++ L +  +     ++   +  ++ +   +    
Sbjct: 303 LNKSPMVVRNLQTLTPAMAARWGVDTEQALRHAEIAAGLPDMSAVWPEVFRRAAEAEPD- 361

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           VD  LY GF  + DR+ ++++   +  +L+   + F D RL EL FRYRARNFP TL+ +
Sbjct: 362 VDENLYGGFIGNDDRRRLNQLREMSGAELAHSRMGFDDGRLKELVFRYRARNFPETLNPE 421

Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
           + + W  HR   L         ++     + +L+     DE  E ++ ALY+Y + ++P+
Sbjct: 422 DTERWEAHRAARLLDGEGGARNVDALFAGIDALAQ--TADERGEAILGALYDYAEAIVPE 479


>gi|254244874|ref|ZP_04938196.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192]
 gi|126198252|gb|EAZ62315.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192]
          Length = 480

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/472 (41%), Positives = 283/472 (59%), Gaps = 13/472 (2%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               YDYET G D   DRP Q AG+R D    +I      +C+P+DD LP P A  ITGI
Sbjct: 6   SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ EA+F  R+H   + P TC+ GYN++RFDD  +R   YRNF+D Y   W 
Sbjct: 66  TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            GNSRWDL+D++R  YA  P+GIQWP   DG  S KL+ L  ANG+EH  AHDA +DV A
Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  LIR+++P+L++YLY  R+K+++   + +  + PLVHVSG F A R   +++ P+
Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVVLPL 242

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
            WHPR ++++I C+L  D     +L +  L +RL+T  DEL +G +PVP+K++ +N+CP+
Sbjct: 243 VWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P+   + E  +R GI+ + C     LLRQ      D+  A+Y +   S+S D + QLY
Sbjct: 303 VAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF  D DR++ +++    PEQL+    PF D RL ELFFRYRARNFP TL+  E+Q W 
Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWE 422

Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
              +  L+       + +  ++  L++   E  G      ++ A  +Y   +
Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472


>gi|257464641|ref|ZP_05629012.1| exonuclease I [Actinobacillus minor 202]
 gi|257450301|gb|EEV24344.1| exonuclease I [Actinobacillus minor 202]
          Length = 514

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 220/471 (46%), Positives = 306/471 (64%), Gaps = 4/471 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F  YDYE+FG + A+DRPAQFAG+R D Q+  I    +F+CK   DYLP PEAV +TGI
Sbjct: 6   TFFFYDYESFGVNPAIDRPAQFAGIRTDEQFNIIGEPVMFYCKQTSDYLPSPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            PQ+   +G+ E EF+ RIH  FS PNTC+IGYNNIR+DD  +R  F+RNF+D Y +SW 
Sbjct: 66  LPQQCNAEGLSEPEFAARIHAEFSQPNTCVIGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLDV+RA YA  P+GI+W + ++G  +FKL++L  ANGI H NAHDA +DVYA
Sbjct: 126 NGNSRWDLLDVVRACYALRPEGIEWVTDEEGIPNFKLENLTKANGISHENAHDAMSDVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF++ +++R K ++ KLID   MTPLVHVSGM G  R NTA + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNTAWVVPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHP  +++VI C+LSGD++   +  S  L  RL+T   EL +   PVP+K VH+NKCPI
Sbjct: 246 AWHPTNQNAVIVCDLSGDIQGLLNESSEVLKNRLYTKRTELSEQEKPVPLKLVHINKCPI 305

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQDVDSQL 360
           L P      E+  R GID ++CLENL  L+ Q         +        + S +V++ L
Sbjct: 306 LAPAKVLLPENAARLGIDREQCLENLKALKAQKSLVREKVIEIFTEDRTFAPSDNVETSL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  D+  M  +   APE+L+   L F+D R+ +L F YRAR++P TL+  E+  W
Sbjct: 366 YDGFFSQADKNNMSILRSLAPEELAHHGLQFADPRVEKLLFHYRARHYPETLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
            ++  + L  SR E++   +++L   +  DE K  L+  L  Y+  +   +
Sbjct: 426 QKYCHQQL-DSRAEQFAQSIETLFQIHHDDEEKVKLLEELTAYVAQISQDQ 475


>gi|293389967|ref|ZP_06634301.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950501|gb|EFE00620.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 475

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 215/474 (45%), Positives = 306/474 (64%), Gaps = 7/474 (1%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M  +   F IYDYE+FG + A DRPAQF G+R D  +  I    V +CK  +DYLP PEA
Sbjct: 2   MAKNDFSFFIYDYESFGVNPAKDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPEA 61

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V +TGITPQ+    G+ E EF+ +I Q FS PNTC++G+NNIR+DD  +R  FYRNF D 
Sbjct: 62  VLVTGITPQECNEKGLSEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDP 121

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           Y +SW NGNSRWDLLD++RA YA  PDGI+WP  D+G  SF+L+ L  ANGI H NAHDA
Sbjct: 122 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDNAHDA 181

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
            +DVYAT+ +  LI++K+PKLF+Y ++ R K ++ KLID   MTPLVHVSGM G  R NT
Sbjct: 182 MSDVYATIEMAKLIKQKQPKLFQYFFENRGKKEVEKLIDTAEMTPLVHVSGMLGNYRGNT 241

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEV 295
            LIA +AWHP  K++VI C+L+ ++         +L + L+T  + L   G +PVP+K +
Sbjct: 242 TLIASLAWHPTNKNAVIVCDLTANIDDLLTKSVEELRENLYTKKETLLAAGALPVPLKLI 301

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA-IYNKPYTSSSQ 354
           H+NKCPI+ P      ++ ER GID + C +N   L++  ++R +     + +    +S 
Sbjct: 302 HINKCPIVAPAKTLLPQNAERLGIDQELCAKNRQRLQEARDIRQKVMDIFHQEREFDASD 361

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
           +V+++LY+GFF+D D+  M  +    PE+L+  NL F D R+PEL F YRAR+F  TL+ 
Sbjct: 362 NVETKLYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNR 421

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            E+  W ++ +K L    + +++ +LQ L+ +Y  +E    L+  +YEY   +I
Sbjct: 422 AEQIKWQKYCRKKLDAEAL-QFEQRLQELAEQYSNNEENLMLLQKVYEYGAQII 474


>gi|241664639|ref|YP_002982999.1| exonuclease I [Ralstonia pickettii 12D]
 gi|240866666|gb|ACS64327.1| Exodeoxyribonuclease I [Ralstonia pickettii 12D]
          Length = 479

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 186/477 (38%), Positives = 281/477 (58%), Gaps = 11/477 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  F+ +DYETFG     DRPAQFAG+R D +  +I      FC+P++D+LPDP +  IT
Sbjct: 4   TPSFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLIT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+  R G+ E  F++ I +    P T  +GYN IRFDD  +R++F+RN  D Y   
Sbjct: 64  GITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYARE 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  +A  P+GIQWP+ +DG  SFKL+ L+ ANG+ H  AHDA +DV
Sbjct: 124 WQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSDV 183

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  LIR  +P+LF++    R K+++   I      PL+H+SGM+G  R   A++ 
Sbjct: 184 RATIALARLIRNAQPRLFDFCLALRKKDRVAAEIG-DAPRPLLHISGMYGVERGCMAVVW 242

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+  HP  K+ +I  +L+ D     D+D   + +R+FT   +L +G   +PIK +H+NK 
Sbjct: 243 PLGGHPTNKNELIVWDLAFDPSELFDMDVATIRERMFTRAADLAEGTTRLPIKSIHINKS 302

Query: 301 PILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           PI++  +   +    ERWGID      +  + +   ++R+ ++ +Y +        VD  
Sbjct: 303 PIVISNMKTLQPGQAERWGIDFATIERHAAIAQGAPDMRETWRQVYARELEPIED-VDQN 361

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GF  + DR++++ +   + EQL+ L+  F+D RLPEL FRYRARNFP TL+E+E + 
Sbjct: 362 LYGGFVGNEDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEYEL 421

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGK--EGLINALYEYLQWVIP 469
           W + R + L          E +  +LQ L  E + +     + ++  LY+Y Q ++P
Sbjct: 422 WEQLRAERLFEGRDGYMTFETFGERLQQLGAEAEENGDTRAQTILQDLYDYAQQIVP 478


>gi|149376775|ref|ZP_01894532.1| Exonuclease I [Marinobacter algicola DG893]
 gi|149358896|gb|EDM47363.1| Exonuclease I [Marinobacter algicola DG893]
          Length = 481

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 202/479 (42%), Positives = 284/479 (59%), Gaps = 10/479 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F  +DYETFG D   DRP+QFAGVR D     IE   + +C PADDY+P PEA  I
Sbjct: 1   MIRSFYWHDYETFGVDPIHDRPSQFAGVRTDADLNIIEDPLIIYCAPADDYVPSPEACLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQKAL +G  EAEF  +I++ FS P TC +GYN++RFDD  SR+  YRN  D Y  
Sbjct: 61  TGITPQKALEEGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVSRHTLYRNLRDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWD++D++R  YA  P+GIQWP ++DG+ SF+L++L +ANGI H  AHDA +D
Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGIQWPKKEDGSPSFRLEELTVANGIAHEAAHDAMSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+A+  LI+EK+PKLFE++   ++K+  R ++D  +M P+ H+S  + A+R   A++
Sbjct: 181 VEATIAVAKLIKEKQPKLFEFVLQNKDKHSARAMLDTASMKPVFHISAKYPATRGCCAMV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
           AP+A HP  K+ VI  +L  D          Q+ +R+FTS  EL +G    P+K V LNK
Sbjct: 241 APLADHPTNKNLVIVYDLREDPSELIHATPEQIRERVFTSQAELGEGTSRFPLKGVQLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDH---KRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
           CP+L P    K    ER         R  E+LT+LR+  +L  R    +++P+     D 
Sbjct: 301 CPVLAPATMLKSLSGERLAELELDGDRLREHLTMLRKAPDLPARIAEAFDQPHEGDLTDP 360

Query: 357 DSQLYDGFFADVDRQIM-DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           D QLY G F     +   + +L+   E L    + F D RL E+ FRYRARN+P TL  +
Sbjct: 361 DEQLYAGGFIGKTDREKLNWLLQQPVETLGEQEVQFEDGRLQEMLFRYRARNYPSTLIGE 420

Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           E + W E R + L         +E +  +LQ L+ + +    K  ++  L+ Y + +IP
Sbjct: 421 EMERWEEFRSQRLMSPKKGWRSLEAFGRELQRLAADPELTPEKRHVLEELHLYGESLIP 479


>gi|307261134|ref|ZP_07542811.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869164|gb|EFN00964.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 514

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 216/473 (45%), Positives = 302/473 (63%), Gaps = 6/473 (1%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M  +  F  YDYE+FG   ALDRPAQFAG+R D  +  I    +F+CK   DYLP PEAV
Sbjct: 1   MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +T ITPQ+   +GV E EF+ RIH  FS PNTCI+GYNNIR+DD  +R  F+RNF+D Y
Sbjct: 61  MVTDITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  PDGI+W + ++G  +FKL++L  ANGI H NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+  LI++K+PKLF++ ++ R K ++ K+ID   MTPLVHVSGMFG +R+NTA
Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
            IAP+AWHP  ++ V+ C+LSGD+       + +L  RL+T  +EL +G+ PVP+K VH+
Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355
           N+CPI+ P      E+  R GID +RCLENL LL+           +    +     S +
Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERRFEPSAN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V++ LYDGFF+  D+  M  +    P +L+   L F+D R+  L F YRAR++P TLS  
Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPRELAHHGLQFADERVEALLFHYRARHYPETLSRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           E+  W ++  + +  ++  ++   + SL   +  +  K  L+  L  Y   + 
Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472


>gi|319793918|ref|YP_004155558.1| exodeoxyribonuclease i [Variovorax paradoxus EPS]
 gi|315596381|gb|ADU37447.1| Exodeoxyribonuclease I [Variovorax paradoxus EPS]
          Length = 479

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 190/481 (39%), Positives = 283/481 (58%), Gaps = 14/481 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ +DYETFG     DRP+QFA +R D +  +I    + +CKPA DYLP PEA  I
Sbjct: 1   MNHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ  L  G+ E +F+ +I + FS P T  +GYN IRFDD  +R +F+RN  D Y  
Sbjct: 61  TGITPQVCLERGIPEHDFAAQIERAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W N   RWDLLDV+R  YA  P+GIQWP ++DG  SFKL+DLA ANG+ H +AHDA +D
Sbjct: 121 EWQNDCGRWDLLDVVRLTYALRPEGIQWPKKEDGKPSFKLEDLARANGLLHESAHDALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSN 236
           V AT+AL  LIR+K+PKLF++ +    K+++   +      +   P +HVSGMF   R  
Sbjct: 181 VRATIALARLIRDKQPKLFDFAFGLHKKDRVASELGLPAMRETAKPFLHVSGMFSVERGC 240

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
            A++ P+A HP  K+ ++  +L+ D    +DLD   L  RLFT   +L +G++ +P+K +
Sbjct: 241 IAVMWPLASHPTNKNELLAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVLRLPVKGI 300

Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
           HLNK P+++  +        ERWGID    + +  + R   ++   +  +Y +P  ++  
Sbjct: 301 HLNKSPMVVGNLRTLAPPMAERWGIDLDTAMRHAAIARDLPDMSAIWSQVYARPKEATPD 360

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
            VD  LY GF  + DR+ ++++   +  +L+     F D RL E+ FRYRARN+P +L+ 
Sbjct: 361 -VDEDLYGGFVGNADRRRLNQLRGLSAGELAKDRTGFDDGRLEEIVFRYRARNWPESLAP 419

Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           +E + W   R   L         IE+  +++ +LS     DE  E ++ ALYEY + + P
Sbjct: 420 EETERWEALRVARLFHGEGGARTIEQLFSEVDALSE--TADERGEEILGALYEYAEAIAP 477

Query: 470 K 470
           +
Sbjct: 478 E 478


>gi|134093838|ref|YP_001098913.1| exonuclease I [Herminiimonas arsenicoxydans]
 gi|133737741|emb|CAL60786.1| Exodeoxyribonuclease I (Exonuclease I) (DNA
           deoxyribophosphodiesterase) (dRPase) [Herminiimonas
           arsenicoxydans]
          Length = 477

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 277/475 (58%), Gaps = 10/475 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T+ F+ +DYETFG +   DRPAQFA +R D +  +I +  + +C+PA+D+LPDP++  IT
Sbjct: 3   THTFLWHDYETFGINTRRDRPAQFAAIRTDAELNEIGAPIMLYCQPANDFLPDPQSCLIT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ  L  G+ E +F+ +I    +   T  +GYN IRFDD  +R +F+RN  D Y   
Sbjct: 63  GITPQVCLERGIPEYQFAAKIESELAQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWD+LDV+R  YA  P+GI WP   DG +SF+L+ L  ANGI H  AHDA +DV
Sbjct: 123 WQNACGRWDILDVVRTAYALRPEGINWPQHPDGRSSFRLEQLTAANGIAHEAAHDALSDV 182

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  LIR+++P+LF++ +    K+++   I +    P +H++GMF A R    ++ 
Sbjct: 183 RATIALARLIRDRQPRLFDFCFALHKKDRVATEIGLPLRRPFLHITGMFPAERGCIGIVW 242

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+A HP  K+ VI  +L+ D      LD+  +  R+F+  D L +G+  +PIK +HLNK 
Sbjct: 243 PLAVHPTNKNEVIVWDLAADPSELATLDAETIRTRMFSKADALPEGVSRLPIKSIHLNKS 302

Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           P+++  +     E   +WG+D    L +  +     ++   ++ ++++P   +   VD  
Sbjct: 303 PVVINNLKTLSAEMTAQWGLDVATALRHAEIAATTPDMTAIWQDVFHRPQEGTPD-VDED 361

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GF  + DR+++  +   +PE L+     FSD RL ELF+RYRARNFP TLS +E + 
Sbjct: 362 LYGGFVGNNDRRLLQELRALSPEALAKATPGFSDARLEELFWRYRARNFPQTLSAEEAER 421

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W EHR   L         IE    ++  LS     DE  E ++ ALY+Y + + P
Sbjct: 422 WEEHRAARLFNGDGGARTIEGMFAEIDQLSE--TADERGEEILAALYDYAEAIAP 474


>gi|300702669|ref|YP_003744269.1| exodeoxyribonuclease i [Ralstonia solanacearum CFBP2957]
 gi|299070330|emb|CBJ41622.1| exodeoxyribonuclease I [Ralstonia solanacearum CFBP2957]
          Length = 489

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 186/477 (38%), Positives = 280/477 (58%), Gaps = 11/477 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T+ F+ +DYETFG     DRPAQFAG+R D +  +I      FC+P+ D+LPDP +  IT
Sbjct: 14  THTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLIT 73

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+  R G+ E  F++ I +  + P T  +GYN+IRFDD  +R++F+RN  D Y   
Sbjct: 74  GITPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYARE 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  +A  PDG++WP   DG  SFKL+ L+ ANG+ H  AHDA +DV
Sbjct: 134 WQNECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLLHEAAHDALSDV 193

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL   +R+ +P+LF++ +  R K ++   I  +   PL+HVSGM+G  R   A++ 
Sbjct: 194 RATIALARRVRDAQPRLFDFCFALRKKERVLAEIG-ETPRPLLHVSGMYGVERGCMAVVW 252

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+ WHP  K+ ++  +L+ D     DL    + +RLFT   EL +G   +P+K +H+NK 
Sbjct: 253 PLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINKA 312

Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           PI++  +   +    ERWG+D      +    +   ++R+ ++ +Y +        VD  
Sbjct: 313 PIVIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVYARELDPIED-VDQN 371

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GF A+ DR+ ++ +   + EQL+ L+  F+D RLPEL FRYRARNFP TL+E E + 
Sbjct: 372 LYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLAEDEYEQ 431

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIP 469
           W + R + L          E +  +LQ L  E    GD   + ++  L++Y Q ++P
Sbjct: 432 WEQLRAERLFEGGGGYLTFEAFGERLQQLGAEAAESGDARAQNILQDLFDYAQQIVP 488


>gi|163752570|ref|ZP_02159753.1| exodeoxyribonuclease I [Shewanella benthica KT99]
 gi|161327543|gb|EDP98744.1| exodeoxyribonuclease I [Shewanella benthica KT99]
          Length = 470

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 205/467 (43%), Positives = 289/467 (61%), Gaps = 5/467 (1%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +    +DYETFG + + DRP+QFAG+R D     +     F+CK A DYLP PEA+ ITG
Sbjct: 7   HTIFWHDYETFGANPSKDRPSQFAGIRTDMDLNIVSEPVTFYCKLATDYLPSPEAILITG 66

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ     G+ E EF  ++++ FS PNTC+ GYN+IRFDD  +R  FYRNF D Y   W
Sbjct: 67  ITPQLVNLKGMPETEFMAKVNEQFSQPNTCVAGYNSIRFDDEVTRYGFYRNFIDPYAREW 126

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             GNSRWD++D++RA YAF P+GI+WP ++DG  SFKL+ L  ANG+ H  AHDA +DVY
Sbjct: 127 QKGNSRWDIIDLVRACYAFRPEGIEWPLKEDGTPSFKLEHLTKANGLSHEKAHDAMSDVY 186

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  LI++K+PKLF+Y +  R K ++ K +D+ NM PLVHVS    A    T LIAP
Sbjct: 187 ATIDMAKLIKQKQPKLFDYYFQLRRKQEVSKQLDVLNMLPLVHVSSKISAEHGCTTLIAP 246

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           VA H   K+++I  NL+ D+    +LD+ Q+ +R++T  D+L    +P+ +K++H+NKCP
Sbjct: 247 VAHHSSNKNAIICVNLAMDISPLIELDAEQIRERMYTRRDDLADDELPISVKQIHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +        E  +R  ID     E   LL+Q   LR++  A+++  + + SQD D QLY
Sbjct: 307 FITSPKILTDELAQRLNIDKAFAREQYKLLKQHPELREKLVAVFDVEHDNGSQDPDLQLY 366

Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
             GFF   D++ M+ I  T P+ L+ L L F D+RL E+ FRYRARN+P TL E E   W
Sbjct: 367 SGGFFGSADKEKMEIIRHTLPQNLAALELNFDDQRLKEMLFRYRARNYPATLDESESMKW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            +  +  L      EY  +L++L  +   DE K+ L+ AL  YL  +
Sbjct: 427 RDFCQSRLND---PEYMMQLENLVNDTANDEDKQKLLTALCHYLSNL 470


>gi|94500901|ref|ZP_01307427.1| exodeoxyribonuclease I [Oceanobacter sp. RED65]
 gi|94427020|gb|EAT12002.1| exodeoxyribonuclease I [Oceanobacter sp. RED65]
          Length = 478

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 195/474 (41%), Positives = 286/474 (60%), Gaps = 6/474 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T     YD+ETFG     DRPAQFAGVR D     I   ++F+C+ ADDYLP P A  IT
Sbjct: 4   TESIYWYDFETFGASPIWDRPAQFAGVRTDLDLNIIAEPDMFYCRQADDYLPHPIACMIT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+PQ     G+ EAEF +RIH  F  P TC+ GYN+IRFDD  +RN  YRNF+D Y+  
Sbjct: 64  GISPQTCQDKGLPEAEFIKRIHDLFMQPQTCVAGYNSIRFDDEVTRNTLYRNFFDPYQRE 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD+LD+MR  Y+  PDGI+WP  +DG  SFKL++L+ ANGI H NAHDA +DV
Sbjct: 124 WQNGNSRWDILDMMRCAYSLRPDGIEWPKGEDGKVSFKLENLSAANGIIHENAHDALSDV 183

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ L  L++EK+PKL++YL++ R K  +  L+D+ N  P++H+SGMF   +   A++ 
Sbjct: 184 YATIGLAKLVKEKQPKLYQYLFELRRKEAVAPLLDVVNKRPVLHISGMFPVEKGCAAVMV 243

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNK 299
           P+A  P+ K+++I  +L  D     +L + Q+  RL+T   EL+  G+  +P+K +H+NK
Sbjct: 244 PLAMEPKNKNAIICFDLMSDPTPLFELTAEQIQARLYTPKAELEAQGIERLPLKSIHINK 303

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           CP+++P    + E  ++WG+   +   NL  ++   +L ++ + + ++ + + S      
Sbjct: 304 CPVVLPAKMVQPEIAKKWGLSGDQIRSNLAKIKNGPDLTEKLQNVMSRDFEAHSDPDAMI 363

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
              GFF   D+Q M+ I ++ PE L  LN+ F DRRL E+ FRYRARN+P TL+  E + 
Sbjct: 364 YSGGFFGPTDKQAMETIRQSHPEALDDLNISFQDRRLEEMLFRYRARNYPETLTGDEFEQ 423

Query: 420 WLEHRKKMLTRSRIEEYKNK---LQSLSGEYKGDEGKEG-LINALYEYLQWVIP 469
           W   RK+ L       Y N     ++L    +     +  L+  L  Y + + P
Sbjct: 424 WETFRKQRLLGPTNGSYLNYELFAKALQEAAQTAPESQYPLLQDLQMYAESIYP 477


>gi|218893406|ref|YP_002442275.1| exonuclease I [Pseudomonas aeruginosa LESB58]
 gi|218773634|emb|CAW29448.1| exodeoxyribonuclease I [Pseudomonas aeruginosa LESB58]
          Length = 480

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/472 (41%), Positives = 283/472 (59%), Gaps = 13/472 (2%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               YDYET G D   DRP Q AG+R D    +I      +C+P+DD LP P A  ITGI
Sbjct: 6   SIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ EA+F  R+H   + P TC+ GYN++RFDD  +R   YRNF+D Y   W 
Sbjct: 66  TPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQ 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            GNSRWDL+D++R  YA  P+GIQWP   DG  S KL+ L  ANG+EH  AHDA +DV A
Sbjct: 126 GGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRA 184

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  LIR+++P+L++YLY  R+K+++   + +  + PLVHVSG F A R   ++  P+
Sbjct: 185 TIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVALPL 242

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHPR ++++I C+L  D     +L +  L +RL+T  DEL +G +PVP+K++ +N+CP+
Sbjct: 243 AWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPV 302

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P+   + E  +R GI+   C +   LLRQ      D+  A+Y +   S+S D + QLY
Sbjct: 303 VAPLSVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLY 362

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF  D DR++ +++    PEQL+    PF D RL ELFFRYRARNFP TL+  E+Q W 
Sbjct: 363 DGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQWE 422

Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
              +  L+       + +  ++  L++   E  G      ++ A  +Y   +
Sbjct: 423 SFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472


>gi|309780540|ref|ZP_07675287.1| exodeoxyribonuclease I [Ralstonia sp. 5_7_47FAA]
 gi|308920695|gb|EFP66345.1| exodeoxyribonuclease I [Ralstonia sp. 5_7_47FAA]
          Length = 479

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 186/477 (38%), Positives = 282/477 (59%), Gaps = 11/477 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  F+ +DYETFG     DRPAQFAG+R D +  +I      FC+P++D+LPDP +  IT
Sbjct: 4   TPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLIT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+  R G+ E  F++ I +    P T  +GYN IRFDD  +R++F+RN  D Y   
Sbjct: 64  GITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYARE 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  +A  P+GIQWP+ +DG  SFKL+ L+ ANG+ H  AHDA +DV
Sbjct: 124 WQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSDV 183

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  LIR  +P+LF++    R K+++   I      PL+H+SGM+G  R   A++ 
Sbjct: 184 RATIALARLIRNAQPRLFDFCLALRKKDRVVAEIG-DAPRPLLHISGMYGVERGCMAVVW 242

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+  HP  K+ +I  +L+ D     D+D   + +R+FT   +L +G   +PIK +H+NK 
Sbjct: 243 PLGGHPTNKNELIVWDLAFDPSELFDMDVATIRERMFTRTADLAEGTTRLPIKSIHINKS 302

Query: 301 PILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           PI++  +   +    ERWGID      +  + +   ++R+ ++ +Y +   +    VD  
Sbjct: 303 PIVISNMKTLQPAQAERWGIDFATIERHAAIAQGAPDMRETWRQVYARELEAIED-VDQN 361

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GF  + DR++++ +   + EQL+ L+  F+D RLPEL FRYRARNFP TL+E+E + 
Sbjct: 362 LYGGFVGNEDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEYEL 421

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGK--EGLINALYEYLQWVIP 469
           W + R + L          E +  +LQ L  E + +     + ++  LY+Y Q ++P
Sbjct: 422 WEQLRAERLFEGRDGYMTFETFGERLQQLGAEAEENGDTRAQTILQDLYDYAQQIVP 478


>gi|207721998|ref|YP_002252436.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum MolK2]
 gi|206587171|emb|CAQ17755.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum MolK2]
          Length = 489

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 185/477 (38%), Positives = 279/477 (58%), Gaps = 11/477 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T+ F+ +DYETFG     DRPAQFAG+R D +  +I      FC+P+ D+LPDP +  IT
Sbjct: 14  THTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPASCLIT 73

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+  R G+ E  F++ I +  + P T  +GYN+IRFDD  +R++F+RN  D Y   
Sbjct: 74  GITPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYARE 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  +A  PDG++WP   DG  SFKL+ L+ ANG+ H  AHDA +DV
Sbjct: 134 WQNECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLLHEAAHDALSDV 193

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL   +R+ +P+LF++ +  R K ++   I  +   PL+HVSGM+G  R   A++ 
Sbjct: 194 RATIALARRVRDAQPRLFDFCFALRKKERVLAEIG-EAPRPLLHVSGMYGVERGCMAVVW 252

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+ WHP  K+ ++  +L+ D     DL    + +RLFT   EL +G   +P+K +H+NK 
Sbjct: 253 PLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINKA 312

Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           PI++  +   +    ERWG+D      +    +   ++R+ ++ +Y +        VD  
Sbjct: 313 PIVIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVYARELDPIED-VDQN 371

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GF A+ DR+ ++ +   + EQL+ L+  F+D RL EL FRYRARNFP TL+E E + 
Sbjct: 372 LYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLSELLFRYRARNFPDTLTEDEYEQ 431

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIP 469
           W + R + L          E +  +LQ L  E    GD   + ++  L++Y Q ++P
Sbjct: 432 WEQLRAERLFEGSGGYLTFEAFGERLQQLGAEAAESGDTRAQNILQDLFDYAQQIVP 488


>gi|322514439|ref|ZP_08067481.1| exodeoxyribonuclease I [Actinobacillus ureae ATCC 25976]
 gi|322119646|gb|EFX91708.1| exodeoxyribonuclease I [Actinobacillus ureae ATCC 25976]
          Length = 515

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 212/473 (44%), Positives = 299/473 (63%), Gaps = 6/473 (1%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M  +  F  YDYE+FG   ALDRPAQFAG+R D  +  I    +F+CK   DYLP PEAV
Sbjct: 1   MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGDPVMFYCKQTPDYLPSPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+   +GV E EF+ R H  FS PNTCI+GYNNIR+DD  +R  F+RNF D Y
Sbjct: 61  MVTGITPQQCNAEGVSEPEFAARTHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFVDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  PDGI+W + ++G  +FKL++L  ANGI H NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+  LI++K+PKLF++ ++ R K +++K+ID   MTPLVHVSGMFG +R NTA
Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIKKMIDTGEMTPLVHVSGMFGNARGNTA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
            IAP+AWHP  ++ V+ C+LSG +       + +L   L+T  +EL + + PVP+K VH+
Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGYVSALLTDSAEELRTHLYTKKEELPENVAPVPLKGVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQD 355
           N+CPI+ P      E+  R GID +RCLENL LL+           +    +    +S +
Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEASAN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V++ LYDGFF+  D+  M  +    P++L    L F+D R+  L F YRAR++P TLS  
Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLQPQELEHHGLQFADERVEALLFHYRARHYPETLSRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           E+  W ++  + +  ++  ++   + +L   +  +  K  L+  L  Y   + 
Sbjct: 421 EQIKWQKYCHQQI-DAKSAQFAESIDNLFQIHHDNPEKVKLLEDLTAYAAQIA 472


>gi|146308334|ref|YP_001188799.1| exonuclease I [Pseudomonas mendocina ymp]
 gi|145576535|gb|ABP86067.1| Exodeoxyribonuclease I subunit C [Pseudomonas mendocina ymp]
          Length = 481

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 184/453 (40%), Positives = 272/453 (60%), Gaps = 11/453 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DRP Q AG+R D    +I      +C+P+DD LP P A  +
Sbjct: 1   MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI PQ+  + G+ E EF  R+H   S P TC  GYN++RFDD  +R   YRNF+D Y  
Sbjct: 61  TGIDPQRLQQLGLDEGEFVTRVHAELSAPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+D++R  YA  P+GI+WP   +G  S KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIEWPQE-EGRVSLKLERLTQANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+ L  L+RE++P+L+++LY  R+K ++   I +  + PL+HVSG F A+R   A +
Sbjct: 180 VRATIGLARLLRERQPRLYDFLYQLRSKQRVMDQIRL--LQPLLHVSGRFSAARHYLAPV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHPR ++++I C+L  D     +LD+  L  RL+T  ++L +   PVP+K +H+N+
Sbjct: 238 LPLAWHPRNRNALIVCDLQADPAPLLELDADTLRARLYTRREDLAEHEAPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   +    +R  +D   C  N   L+      +D+   IY +   ++S D + 
Sbjct: 298 CPVVAPLSVLRDADRQRLQLDWSVCERNAERLKAAQALWQDKLPTIYREEAFAASTDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++    P+ L++ N PF D RLPEL FRYRARNFP +LS  E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRNAQPQALASQNWPFDDARLPELLFRYRARNFPDSLSPTEQQ 417

Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSG 445
            W+E  +  L        + + +++  L  L+ 
Sbjct: 418 RWMEFCRLRLNDAQYGAPNTLAQFRAALDELAA 450


>gi|315122155|ref|YP_004062644.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495557|gb|ADR52156.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 472

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 323/469 (68%), Positives = 386/469 (82%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +HFVIYDYETFG DVA DRPAQFAG+R+D Q E I+S EVFFCKP+DDYL DPE+V IT
Sbjct: 1   MDHFVIYDYETFGLDVARDRPAQFAGIRIDHQLETIQSKEVFFCKPSDDYLVDPESVLIT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKALRDGVVE EF++R++QFF  PNTCI GYNNIRFDD YS+NIFYRNFYD Y WS
Sbjct: 61  GITPQKALRDGVVEHEFAQRVYQFFCKPNTCIFGYNNIRFDDKYSQNIFYRNFYDPYGWS 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + NGNSRWDL++VMRAIYAFSPDGIQWP RDDG  SFKLQDLALANGIE+VNAHDA+ DV
Sbjct: 121 YKNGNSRWDLINVMRAIYAFSPDGIQWPHRDDGFPSFKLQDLALANGIEYVNAHDAEQDV 180

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            ATLAL  L+R +KPKLF YLY+ RNK  L+ LIDI+N+TPLVHVS  FGA+++NTALIA
Sbjct: 181 DATLALARLVRREKPKLFNYLYNSRNKMHLKSLIDIRNLTPLVHVSSKFGAAQANTALIA 240

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHPR  + +I CNLSGDM+V QDLDS++L KRLFT HD+L GL PVP+K VH+N+CP
Sbjct: 241 PIAWHPRNANEIIACNLSGDMQVLQDLDSIELGKRLFTRHDQLNGLSPVPLKSVHINRCP 300

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           +L PI     + FER GID KRC++NL LLRQQ +L+++  AIY+KP+ S S+DVDS+LY
Sbjct: 301 VLFPIGSFHSKKFERLGIDDKRCVDNLKLLRQQVDLQEKVIAIYDKPFVSLSEDVDSRLY 360

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF +D D ++ D I  T PE+LSTLN  F+D+RLPEL FRYRARNFPHTL  KEKQ WL
Sbjct: 361 DGFLSDEDCKMRDCIPLTEPEKLSTLNFQFTDQRLPELLFRYRARNFPHTLDSKEKQAWL 420

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
           EHRK + TRSRIEEY+NKL +L   YK +E +E L+  L++YLQ ++PK
Sbjct: 421 EHRKAIFTRSRIEEYENKLHTLLNAYKSNEREERLVQLLFDYLQLIVPK 469


>gi|161621731|ref|NP_521246.2| exonuclease I [Ralstonia solanacearum GMI1000]
          Length = 477

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 184/478 (38%), Positives = 281/478 (58%), Gaps = 11/478 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+ F  +DYETFG     DRPAQFAG+R D +  +I      FC+P++D+LPDP +  I
Sbjct: 1   MTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+  R G+ E  F++ I +  + P T  +GYN+IRFDD  +R++F+RN  D Y  
Sbjct: 61  TGITPQQCRRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W N   RWDLLDV+R  +A  PDG++WP   DG  SFKL+ L+ ANG++H  AHDA +D
Sbjct: 121 EWQNTCGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLQHEAAHDALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL   +R  +P+LF++ +  R K ++   I   +  PL+HVSGM+G  R   A++
Sbjct: 181 VRATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDAS-RPLLHVSGMYGVERGCLAVV 239

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+ WHP  K+ ++  +L+ D     DL    + +RLFT   +L +G   +PIK +H+NK
Sbjct: 240 WPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINK 299

Query: 300 CPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
            PI++  +   +    ERWGID      +  + +   +LR+ ++ +Y +        VD 
Sbjct: 300 SPIVIGNLKTLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYARELEPIED-VDQ 358

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
            LY GF  + DR+ ++ +   + EQL+ L+  F+D RLPEL FRYRARNFP TL+E+E +
Sbjct: 359 NLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLFRYRARNFPDTLTEEEYE 418

Query: 419 DWLEHRKKMLTRS-----RIEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469
            W + R + L          + +  +++ L      + D   + ++  LY+Y Q ++P
Sbjct: 419 QWEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLYDYAQQILP 476


>gi|187930471|ref|YP_001900958.1| exonuclease I [Ralstonia pickettii 12J]
 gi|187727361|gb|ACD28526.1| Exodeoxyribonuclease I [Ralstonia pickettii 12J]
          Length = 479

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/477 (39%), Positives = 280/477 (58%), Gaps = 11/477 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  F+ +DYETFG     DRPAQFAG+R D +  +I      FC+P++D+LPDP +  IT
Sbjct: 4   TPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLIT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+  R G+ E  F++ I +    P T  +GYN IRFDD  +R++F+RN  D Y   
Sbjct: 64  GITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYARE 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  +A  P+GIQWP+ +DG  SFKL+ L+ ANG+ H  AHDA +DV
Sbjct: 124 WQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSDV 183

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  LIR  +P+LF++    R K+++   I      PL+H+SGM+G  R   A++ 
Sbjct: 184 RATIALARLIRNAQPRLFDFCLALRKKDRVVAEIG-DAPRPLLHISGMYGVERGCMAVVW 242

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+  HP  K+ +I  +L+ D      +D   + +R+FT   +L +G   +PIK +H+NK 
Sbjct: 243 PLGGHPANKNELIVWDLAFDPSELFHMDVATIRERMFTRTADLAEGTTRLPIKSIHINKS 302

Query: 301 PILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           PI++  +   +    ERWGID      +  + +   ++R+ ++ +Y +        VD  
Sbjct: 303 PIVISNMKTLQPAQAERWGIDFAMIERHAAIAQGAPDMRETWRQVYARELEPIED-VDQN 361

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GF  + DR++++ +   + EQL+ L+  F+D RLPEL FRYRARNFP TL+E+E + 
Sbjct: 362 LYGGFVGNDDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEYER 421

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIP 469
           W + R + L          E +  +LQ L  E    GD   + ++  LY+Y Q ++P
Sbjct: 422 WEQLRAERLFEGRDGYMTFETFGERLQQLGAEAAENGDTRAQTILQDLYDYAQQIVP 478


>gi|166711560|ref|ZP_02242767.1| exonuclease I [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 481

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 198/473 (41%), Positives = 282/473 (59%), Gaps = 10/473 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    FF +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ ALR+GV EAE   RI +  S P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TGITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA ANG+   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANGVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL++Y    R+K     L+D+  M P++H+S  + ASR   A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIVMQPVLHISQRYPASRLCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD  V   L   ++A RL++   +L +G   +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYSRAADLPEGERRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + +   FER G+D    L     L +    L ++ + +Y   +   +++ D 
Sbjct: 301 SPALVAWQHLRAADFERLGVDRDAVLAKAARLHEMGPELAEKVRQVYGSERAPAAATNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D++++ ++  +AP +L  L   F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
           ++ W  +R++ L          +E+Y  ++  L   +  D  K+ L++ L  +
Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAW 473


>gi|294141308|ref|YP_003557286.1| exodeoxyribonuclease I [Shewanella violacea DSS12]
 gi|293327777|dbj|BAJ02508.1| exodeoxyribonuclease I [Shewanella violacea DSS12]
          Length = 470

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 204/467 (43%), Positives = 292/467 (62%), Gaps = 5/467 (1%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +    +DYETFG + + DRP+QFAG+R D     +     F+CK A+DYLP PEA+ ITG
Sbjct: 7   HTIFWHDYETFGANPSKDRPSQFAGIRTDMDLNIVSEPVTFYCKVANDYLPSPEAILITG 66

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ A   G+ E EF  ++++ FS PNTC+ GYN+IRFDD  +R  FYRNF D Y   W
Sbjct: 67  ITPQLANLKGMPETEFMAKVNEQFSQPNTCVAGYNSIRFDDEVTRFGFYRNFIDPYAREW 126

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             GNSRWD++D++RA YAF P+GI+WP ++DG  SFKL+ L  ANG+ H  AHDA +DVY
Sbjct: 127 QKGNSRWDIIDLVRACYAFRPEGIEWPLKEDGTPSFKLEHLTKANGLSHEKAHDAMSDVY 186

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  LI++K+PKLF+Y +  R K ++ K +D+ NM PLVHVS    A    T LIAP
Sbjct: 187 ATIDMAKLIKQKQPKLFDYYFQLRRKQEVSKQLDVLNMQPLVHVSSKISAEHGCTTLIAP 246

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           VA H   K+++I  NL+ D+    +LD+ Q+  R++T  D+L    +P+ +K++H+NKCP
Sbjct: 247 VAHHSTNKNAIICVNLAMDISPLIELDAEQIRDRMYTRRDDLAADELPISVKQIHINKCP 306

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +        E  +R  ID     E   LL+Q   LR++  A+++  + ++SQD D QLY
Sbjct: 307 FVTSPKILTDELAQRLNIDKAFAREQYKLLKQHPELREKLVAVFDVEHDNASQDPDFQLY 366

Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
             GFF+  D++ M+ I  T P+ L+ L   F D+RL E+ FRYRARN+P TL E E   W
Sbjct: 367 SGGFFSSADKEKMEIIRHTLPQNLAALEFNFDDQRLKEMLFRYRARNYPATLDESESMKW 426

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            +  +  L      EY  +L++L  +   +E K+ L+ AL  YL+ +
Sbjct: 427 RDFCQTRLDD---PEYMIRLENLVNDTTDNEDKQKLLTALCHYLRDL 470


>gi|241763393|ref|ZP_04761448.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN]
 gi|241367435|gb|EER61746.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN]
          Length = 481

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/483 (37%), Positives = 280/483 (57%), Gaps = 14/483 (2%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   F+ +DYETFG +   DRPAQFA +R D +  ++    + +C+PA+DYLPDP++  
Sbjct: 1   MSPHTFLWHDYETFGANTRRDRPAQFAAIRTDAELREVGEPLMLYCQPANDYLPDPQSCL 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           ITGITPQ  L  GV E EF+ RI   F+ P T  +GYN IRFDD  +R +F+RN  D Y 
Sbjct: 61  ITGITPQLCLEKGVPEHEFANRIEAEFAQPGTIGVGYNTIRFDDEITRFMFWRNLIDPYA 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             W N   RWDLLDV+R  YA  PDGI WP ++DG+ SFKL+ L+ ANG+ H  AHDA +
Sbjct: 121 REWQNQCGRWDLLDVVRMTYALRPDGIHWPRKEDGSPSFKLEHLSKANGLAHEAAHDALS 180

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ----NMTPLVHVSGMFGASRS 235
           DV AT+AL  LIR+  P+LF++      K+++   + +        P +HVSGMF A R 
Sbjct: 181 DVRATIALARLIRQHNPRLFDFALSLHKKDRVAAELRLPATALTARPFLHVSGMFPAERG 240

Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKE 294
             A++ P+A HP  K+ VI  +L+ D R    L + ++  R+F+   +L +G+  +P+K 
Sbjct: 241 CLAVMWPLASHPTNKNEVIAWDLAHDPRELATLGTDEIRLRMFSRAADLPEGMTRLPVKT 300

Query: 295 VHLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS 353
           +HLNK P+++  ++       +RWGID  +  ++  + R   ++   + A++ +P   ++
Sbjct: 301 IHLNKSPMVVGNVNTLTPALAQRWGIDLVQAAQHAEVARSLPDMSGIWPAVFARPAEPAA 360

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
             VD  LY GF  + DR+ ++ +     ++L+     F D RL EL +RYRARNFP TLS
Sbjct: 361 D-VDQDLYGGFVGNSDRRRLNDLRAMDGQKLAAARTGFDDPRLEELVWRYRARNFPTTLS 419

Query: 414 EKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            +E + W  HR   L         ++    ++  +  E   DE  + ++ ALY+Y + + 
Sbjct: 420 PEEGERWEAHRAACLFDGQGGARTVDRLFTEIDQI-SETADDERTQEILGALYDYAEHIA 478

Query: 469 PKE 471
           P+ 
Sbjct: 479 PER 481


>gi|77360198|ref|YP_339773.1| exonuclease I [Pseudoalteromonas haloplanktis TAC125]
 gi|76875109|emb|CAI86330.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis TAC125]
          Length = 481

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 210/472 (44%), Positives = 299/472 (63%), Gaps = 8/472 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               +DYET+G     D+P+QFAGVR D     I    + +CKP  DYLP PEA  ITGI
Sbjct: 10  TIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A++ G+VEAEF  +IH  FSVPNTC+ GYN+IRFDD  SR  FYRNFYD Y   + 
Sbjct: 70  TPQVAMKKGLVEAEFIAKIHAQFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYK 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N NSRWD++D++RA YA  P+GI+WP ++DG+ SFKL+ L +ANGIEH  AHDA +DV A
Sbjct: 130 NNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTA 189

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  LI++K+PKL+ + +  R K  L +L+D+ NMTPLVH S    A++  T+ +AP+
Sbjct: 190 TIALAKLIKDKQPKLYNFFFSLRGKKALAELVDVFNMTPLVHTSSRIPATQGCTSWVAPM 249

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           ++HP  K++VI  +L+   +V  DL   QL KRL+T   +L +  +PV +K VHLNKCPI
Sbjct: 250 SFHPVNKNAVICFDLTQSPQVLIDLSVEQLRKRLYTKRIDLAEDELPVGLKLVHLNKCPI 309

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361
           L P      E+  R GID ++CL+NL +L+  + LRD+   ++N+    S++ +VD  LY
Sbjct: 310 LAPAKTLLPENAARLGIDREQCLKNLAVLKANSELRDKVTEVFNEQGDYSATTNVDYLLY 369

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGF +  D+     I    PE L+ L L F +++   L FRYRARN+P TL+++E   W 
Sbjct: 370 DGFTSHADKAKFAIIRDAKPEDLADLKLDFENKKFNTLLFRYRARNWPQTLNQQELDQWR 429

Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ +  L           +++   L++L+ E+   E    ++ ALY Y Q +
Sbjct: 430 QYCQNKLMHGEDQPSINAQDFMITLENLAHEHDDSEKNLTILKALYNYAQSM 481


>gi|325921108|ref|ZP_08182979.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865]
 gi|325548380|gb|EGD19363.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865]
          Length = 481

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 196/477 (41%), Positives = 282/477 (59%), Gaps = 10/477 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    F+ +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFYVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ ALR+GV EAE   RI +  S P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TGITPQHALREGVSEAEAFARISEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL+EY    R+K     L+D+  M P++H+S  + A+R   A +
Sbjct: 181 VYATIGMARRFQQHQPKLWEYALRLRDKRFAATLLDVIAMQPVLHISQRYPAARMCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD  V   L   ++A RL+    +L +G   +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSS--QDV 356
            P L+   + ++  F+R GIDH   L     LR+    L ++ + +Y     ++    D 
Sbjct: 301 SPALVAWQHLREADFQRLGIDHDAVLAKAARLRELGPELAEKVRQVYGNERAAAPAVNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D++++ ++  +AP +L  L   F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ W  +R++ L          ++++  ++  L   +  D  K+ L++ L  +   +
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLDQFHAQIADLRLAHPDDATKQALLDQLAAWGSDL 477


>gi|325578381|ref|ZP_08148516.1| exodeoxyribonuclease I [Haemophilus parainfluenzae ATCC 33392]
 gi|325160117|gb|EGC72246.1| exodeoxyribonuclease I [Haemophilus parainfluenzae ATCC 33392]
          Length = 473

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 222/469 (47%), Positives = 309/469 (65%), Gaps = 4/469 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    + +CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGINPASDRPAQFAGIRTDANFNIIGEPVMLYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+ +I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF++ +++R K ++ KL+D   MTPLVHVSGM G  R N A +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLLDTAEMTPLVHVSGMLGNYRGNCAWVAPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           AWHP  +++VI C+LSGD+       +V L + L+T   EL+  G+  VP+K VH+NKCP
Sbjct: 246 AWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQL 360
           IL P      E+  R GID + CL+NL  LRQ  ++R++   I+  +     S +V+++L
Sbjct: 306 ILAPAKTLLPENAARLGIDRQHCLDNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF+  D+  M  +     E+L+   L F D+R+PEL F YRAR+F  TL+  E+  W
Sbjct: 366 YNGFFSSADKNNMAILRDLPAEKLAGHGLAFEDKRIPELLFHYRARHFYKTLNRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
            ++R++ L +S + +++  LQ L+ EY  +  K  L+  +YEY   ++ 
Sbjct: 426 QKYRQRKLEQSAV-KFEESLQQLAEEYSDNPTKLNLLQQVYEYGAKLLS 473


>gi|299529972|ref|ZP_07043399.1| exonuclease I [Comamonas testosteroni S44]
 gi|298721952|gb|EFI62882.1| exonuclease I [Comamonas testosteroni S44]
          Length = 479

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/481 (39%), Positives = 285/481 (59%), Gaps = 14/481 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F  +DYETFG     DRPAQFAG+R D Q  +I    +++C+PA+DYLPDP++  I
Sbjct: 1   MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+AL +GV E EF+  I    +   T  +GYN IRFDD  +R +F+RN  D Y  
Sbjct: 61  TGITPQRALEEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NG  RWDLLDV+R +YA  P+GIQWP+++DG  SF+L+DLA ANG+ H  AHDA +D
Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPEGIQWPTKEDGTPSFRLEDLARANGLLHEQAHDALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSN 236
           V AT+AL  LIREK+P+LF++ +    K+   + +      ++  P +HV+GM   +R  
Sbjct: 181 VRATIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGC 240

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
             ++ P+A HP  K+ VI  +L+ D      +   +L  RLFT   EL +G+  +PIK +
Sbjct: 241 LGVMWPLATHPTNKNEVICWDLAADPAELSGISIEELRLRLFTRQAELPEGVSRLPIKSI 300

Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
           H+NK P+++  +        E+WG+D +  +++  + R   ++  ++K+++         
Sbjct: 301 HVNKSPMVVGSLKTLSPAMAEKWGVDMELAMQHAAIARDLPDMSAQWKSVF-TREAGEPL 359

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
           D D  LY GF  + DR+ ++RI R +P++L+     F D RL EL +RYRARNFP TL  
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELVWRYRARNFPQTLDA 419

Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
            E+Q W +HR   L          E+  + + +LS     DE  E ++  LY+Y   ++P
Sbjct: 420 DEQQRWEQHRAACLIEGQGGARTAEQMFSMIDALSE--SVDERGEEILGDLYDYGSNLVP 477

Query: 470 K 470
           +
Sbjct: 478 E 478


>gi|330504554|ref|YP_004381423.1| exonuclease I [Pseudomonas mendocina NK-01]
 gi|328918840|gb|AEB59671.1| exonuclease I [Pseudomonas mendocina NK-01]
          Length = 481

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/475 (39%), Positives = 283/475 (59%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DRP Q AG+R D    +I      +C+P+DD LP P A  +
Sbjct: 1   MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI PQ+  + G+ E EF  R+H   S P TC  GYN++RFDD  +R   YRNF+D Y  
Sbjct: 61  TGIDPQRLQQLGLDEGEFMTRVHAALSTPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+D++R  YA  P+GI+WP  +DG  S KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIEWP-EEDGRVSLKLERLTQANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+ L  L+RE++P+L+++LY  R+K ++   I +  + P++H+SG F A+R   A +
Sbjct: 180 VRATIGLARLLRERQPRLYDFLYQLRSKQRVMDQIRL--LQPMLHISGRFSAARHYLAPV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHPR ++++I C+L  D     DLD+  L  RL+T  ++L +G VPVP+K +H+N+
Sbjct: 238 LPLAWHPRNRNALIVCDLQADPTPLLDLDAEVLRSRLYTRREDLAEGEVPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   +    +R  +D   C  N+ +LR  Q   +D+   IY +   ++S D + 
Sbjct: 298 CPVVAPLSVLRDTDRQRLQLDWSHCERNVEMLRDAQPLWQDKLTDIYREESFAASSDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++    P+ L+    PF D RLPEL FRYRARNFP +LS  E Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRSAQPQSLANDKWPFDDARLPELLFRYRARNFPDSLSPDEGQ 417

Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W++  ++ L+         + ++   L+ L  +   +  +  L+     Y + +
Sbjct: 418 RWVDFCRQRLSDPQFGAPNTLAQFHAALEQLRADC--NPQQLQLLQQWRAYAEQL 470


>gi|17430149|emb|CAD16834.1| putative exodeoxyribonucleaseIprotein [Ralstonia solanacearum
           GMI1000]
          Length = 489

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/477 (38%), Positives = 280/477 (58%), Gaps = 11/477 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T+ F  +DYETFG     DRPAQFAG+R D +  +I      FC+P++D+LPDP +  IT
Sbjct: 14  THTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLIT 73

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+  R G+ E  F++ I +  + P T  +GYN+IRFDD  +R++F+RN  D Y   
Sbjct: 74  GITPQQCRRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYARE 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  +A  PDG++WP   DG  SFKL+ L+ ANG++H  AHDA +DV
Sbjct: 134 WQNTCGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLQHEAAHDALSDV 193

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL   +R  +P+LF++ +  R K ++   I   +  PL+HVSGM+G  R   A++ 
Sbjct: 194 RATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDAS-RPLLHVSGMYGVERGCLAVVW 252

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+ WHP  K+ ++  +L+ D     DL    + +RLFT   +L +G   +PIK +H+NK 
Sbjct: 253 PLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINKS 312

Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           PI++  +   +    ERWGID      +  + +   +LR+ ++ +Y +        VD  
Sbjct: 313 PIVIGNLKTLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYARELEPIED-VDQN 371

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GF  + DR+ ++ +   + EQL+ L+  F+D RLPEL FRYRARNFP TL+E+E + 
Sbjct: 372 LYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLFRYRARNFPDTLTEEEYEQ 431

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469
           W + R + L          + +  +++ L      + D   + ++  LY+Y Q ++P
Sbjct: 432 WEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLYDYAQQILP 488


>gi|188992104|ref|YP_001904114.1| exonuclease I [Xanthomonas campestris pv. campestris str. B100]
 gi|167733864|emb|CAP52070.1| Exodeoxyribonuclease I [Xanthomonas campestris pv. campestris]
          Length = 481

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 192/477 (40%), Positives = 276/477 (57%), Gaps = 10/477 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    FF +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ ALR+GV EAE   RI +    P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TGITPQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL++Y    R+K     L+D+  M P++H+S  + A+R   A +
Sbjct: 181 VYATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD      L   ++A RL+    +L +G   +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + + +  +R G+D          LR+    L ++ + +Y   +   ++  D 
Sbjct: 301 APALVAWQHLRSDDLQRLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D++++ ++  +AP +L  L   F D RL EL FRYRARN+P TLS  E
Sbjct: 361 DASLYDGFLAEGDKRLLTQVRSSAPAELGALEARFRDPRLIELLFRYRARNWPQTLSPDE 420

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            Q W  +R++ L          +E++  ++  L   +  D  K+ L++ L  +   +
Sbjct: 421 HQRWNAYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHPDDATKQSLLDQLAAWGSDL 477


>gi|304413420|ref|ZP_07394893.1| exonuclease I [Candidatus Regiella insecticola LSR1]
 gi|304284263|gb|EFL92656.1| exonuclease I [Candidatus Regiella insecticola LSR1]
          Length = 475

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 234/465 (50%), Positives = 320/465 (68%), Gaps = 3/465 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F ++DYETFG++ ALDRP QFAGVR D  +  I+   V +C PA+DYLP PEAV IT
Sbjct: 7   KSTFYVHDYETFGQNPALDRPVQFAGVRTDDDFNIIDDPLVIYCAPANDYLPQPEAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL+ GV EAEF ++IHQ FSV  TC +GYNNIRFDD  SRNIFYRNFYD Y ++
Sbjct: 67  GITPQYALKHGVNEAEFCQKIHQQFSVAGTCTLGYNNIRFDDEVSRNIFYRNFYDPYAYN 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDV+RA YA  P+GI WP   DG  SFKL+ LA ANGI+H+ AHDA +DV
Sbjct: 127 WQNGNSRWDLLDVVRACYALRPEGINWPKNADGLPSFKLEHLAKANGIQHLKAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ L  L+++ +P+LF+Y Y +R+K++++ LIDI+NMTPLVHVSGMFG  RSN +L+A
Sbjct: 187 YATIELAKLVKQAQPRLFKYFYHHRSKHKIKALIDIENMTPLVHVSGMFGVRRSNISLVA 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKC 300
           P+AWHP  K++VI C+L+ D+     LD   L + L+T  D L      +P+K VH+NKC
Sbjct: 247 PLAWHPENKNAVIVCDLAADISP-LSLDVNTLREHLYTPKDPLNPQQITIPLKLVHINKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRF-KAIYNKPYTSSSQDVDSQ 359
           PIL P++  +++  +R  ID + CL  L  LRQ   ++++               +VD+Q
Sbjct: 306 PILAPVNTWREKETKRLKIDLQYCLNQLESLRQNPQIKEKVNALFKQMTARPKVNNVDAQ 365

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF D D   + +I +T+P+ L  LN  F D RL  L FR+RARN+ +TL + E++ 
Sbjct: 366 LYCGFFNDTDHNTIKKIQQTSPQNLPALNFCFQDPRLETLLFRFRARNYHNTLDDTEQRR 425

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
            LE+RK++L+  +I+EY  +L  L  +Y+ +E K  L+ +L +Y+
Sbjct: 426 LLEYRKEVLSPEKIKEYILQLNQLCYQYQNNEEKSSLLKSLLDYV 470


>gi|261868004|ref|YP_003255926.1| exonuclease I [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413336|gb|ACX82707.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 475

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 214/474 (45%), Positives = 304/474 (64%), Gaps = 7/474 (1%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M  +   F IYDYE+FG + A DRPAQF G+R D  +  I    V +CK  +DYLP PEA
Sbjct: 2   MAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEA 61

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V +TGITPQ+    G+ E EF+ +I Q FS PNTC++G+NNIR+DD  +R  FYRNF D 
Sbjct: 62  VLVTGITPQECNEKGLWEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDP 121

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           Y +SW NGNSRWDLLD++RA YA  PDGI+WP  D+G  SF+L+ L  ANGI H +AHDA
Sbjct: 122 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDSAHDA 181

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
            +DVYAT+ +  LI+ K+PKLF+Y ++ R K ++ KLID   M PLVHVSGM G  R NT
Sbjct: 182 MSDVYATIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGNT 241

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEV 295
            LIAP+ WHP  K++VI C+L+ D+         +L + L+T  + L   G +PVP+K +
Sbjct: 242 TLIAPLTWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLI 301

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA-IYNKPYTSSSQ 354
           H+NKCPI+ P      ++ ER GID + C +N   L++  ++R +     + +    +S 
Sbjct: 302 HINKCPIVAPAKTLLPQNAERLGIDQELCAQNRQRLQEAKDIRQKVMDIFHQEREFDASD 361

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
           +V+++LY+GFF+D D+  M  +    PE+L+  NL F D R+PEL F YRAR+F  TL+ 
Sbjct: 362 NVETELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNR 421

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            E+  W ++ +K L    + +++ +LQ L+ +Y  +E    L+  +YEY   +I
Sbjct: 422 AEQIKWQKYCRKKLDAEAL-QFEQRLQELAEQYSNNEENLMLLQKVYEYGTKII 474


>gi|289663122|ref|ZP_06484703.1| exonuclease I [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 481

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 197/477 (41%), Positives = 283/477 (59%), Gaps = 10/477 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    FF +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ ALR+G+ EAE   RI +  S P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TGITPQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLANANDVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL++Y    R+K     L+D+  M P++H+S  + ASR   A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD  V   L   ++A RL+    +L +G   +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLSRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + +   F+R G+DH+  L     LR+    L ++ + +Y   +   +++ D 
Sbjct: 301 SPALVAWQHLRAADFQRLGVDHEAVLAKAARLRELGPALAEKVRQVYGSERAPAAATNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D+ ++ ++  +AP +L  L   F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKHLLTQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ W  +R++ L          +E+Y  ++  L   +  D  K+ L++ L  +   +
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRLAHPDDANKQALLDQLAAWGSDL 477


>gi|301156280|emb|CBW15751.1| exonuclease I [Haemophilus parainfluenzae T3T1]
          Length = 473

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 224/474 (47%), Positives = 314/474 (66%), Gaps = 6/474 (1%)

Query: 1   MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M N+F   IYDYE+FG + A DRPAQFAG+R D  +  I    + +CK  +DYLP PEAV
Sbjct: 1   MANNFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+    G+ E EF+ +I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y
Sbjct: 61  MVTGITPQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+  LI+EK+PKLF++ +++R K ++ KLID   MTPLVHVSGM G  R N A
Sbjct: 181 ADVYATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCA 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296
            +AP+AWHP  +++VI C+LSGD+       +V L + L+T   EL+  G+  +P+K VH
Sbjct: 241 WVAPLAWHPTNQNAVIVCDLSGDINNLLSKSAVDLRQDLYTKKSELEERGVSSIPLKLVH 300

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQD 355
           +NKCPIL P      E+  R GID + CL+NL  LRQ  ++R++   I++ +     S +
Sbjct: 301 INKCPILAPAKTLLPENAARLGIDRQHCLDNLAKLRQSLDIREKVIEIFSGEREFEPSNN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V+++LY+GFF++ D+  M  +     E+L+   L F D+R+PEL F YRAR+F  TL+  
Sbjct: 361 VETELYNGFFSNADKNNMAILRDLPAEKLAEHGLAFEDKRIPELLFHYRARHFYKTLNRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           E+  W ++R++ L +S + +++  LQ L+ EY  +  K  L+  +YEY   ++ 
Sbjct: 421 EQIKWQKYRQRKLEQSAV-KFEESLQRLAEEYSDNPTKLNLLQQVYEYGAKLLS 473


>gi|171059394|ref|YP_001791743.1| exonuclease I [Leptothrix cholodnii SP-6]
 gi|170776839|gb|ACB34978.1| Exodeoxyribonuclease I [Leptothrix cholodnii SP-6]
          Length = 484

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 189/479 (39%), Positives = 271/479 (56%), Gaps = 11/479 (2%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + F  +DYETFGR    DRPAQFAG+R D    +I++  +  C+PA DYLPDPE+  +TG
Sbjct: 4   HTFFWHDYETFGRSPRSDRPAQFAGIRTDLDLNEIDAPLMQHCQPAPDYLPDPESCLLTG 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I PQ  L  GV E  F+  I    + P T  +GYN+IRFDD  +R++F+RN  D Y   W
Sbjct: 64  IVPQTCLELGVPEHTFADAIEDQLARPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREW 123

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N   RWDLLDV+R  YA  PDGIQWP  DDG  SFKL+ L  ANGI H  AHDA +DV 
Sbjct: 124 QNECGRWDLLDVVRCCYALRPDGIQWPRHDDGRPSFKLEHLTAANGISHEGAHDALSDVR 183

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID--IQNMTPLVHVSGMFGASRSNTALI 240
           AT+AL  LI+  +PKLF++    R K+ +   I+   +   P +H+SGM+G  R   A++
Sbjct: 184 ATIALARLIKNARPKLFDFCLRLRKKDAVLAEIEGAQRQGRPFLHISGMYGPERGCLAIV 243

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+A HP  K+ +I  +L+ D      LD+  +  RLF    EL +G+  +PIK +H+NK
Sbjct: 244 WPLAPHPTNKNEIIVWDLAEDPGELFTLDAEAIRARLFVKASELPEGVGRLPIKSIHINK 303

Query: 300 CP-ILMPIDYCKKEHFERWGIDHKRCLENLTL-LRQQTNLRDRFKAIYNKPYTSSSQDVD 357
            P ++  +     E  +RWGID  + L +  L  R+   +   +  ++ +P  +   DVD
Sbjct: 304 SPVVIAQLKTLGAEMAQRWGIDKDQALHHAELAARKGATMAGIWPEVFARPAAAEPPDVD 363

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
             LY GF    DR+ + R+   APE+L+     F+D RL EL  R+RARNFP TL ++E+
Sbjct: 364 EDLYGGFIGQDDRRTLQRVRALAPEKLADKLPTFNDPRLDELLLRWRARNFPQTLRDEER 423

Query: 418 QDWLEHRKKMLTRS-----RIEEYKNKLQSLSGE-YKGDEGKEGLINALYEYLQWVIPK 470
             W  H  + L         +  +  ++ +L     + DE    ++ ALY+Y + + P 
Sbjct: 424 ARWERHCARRLHDGAGGAMTLAAFFERIDTLGEALPEDDERGPEILGALYDYAEQIAPP 482


>gi|167035442|ref|YP_001670673.1| exonuclease I [Pseudomonas putida GB-1]
 gi|166861930|gb|ABZ00338.1| Exodeoxyribonuclease I [Pseudomonas putida GB-1]
          Length = 477

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 188/473 (39%), Positives = 282/473 (59%), Gaps = 9/473 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M++    +DYET G +   DRP Q AGVR D    +I+     +C+P+DD LP P A  +
Sbjct: 1   MSSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ     G+ EAEF  +++   + P TC  GYN +RFDD  +R   YRNF+D Y  
Sbjct: 61  TGITPQLLAEQGLCEAEFMTQVYAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+D++R  YA  PDGIQWP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPDGIQWP-QQDGRTSLRLELLSKANGIDHGHAHEALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIR+K+PKL+++L+  R+K+++ + I +  + PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHPR ++++I C+L  +        +  L +RL+T HDEL +G +PVP+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLHHETLPLLRESAEILRQRLYTRHDELAEGELPVPLKLVQINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           CP+L P+   +    +R G+D          L  QQ   +D+ + IY K   + S+D + 
Sbjct: 298 CPVLAPLSVLRPADQQRLGLDLTLLQSRGEQLANQQAQWQDKLEHIYGKDEFAPSEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLY+GF  D DR++ +++    P QLS  +  F D RLPEL FRYRARNFP TL+ +E Q
Sbjct: 358 QLYEGFIGDRDRRLCEQVRALEPAQLSRGHWMFDDPRLPELLFRYRARNFPETLTSEELQ 417

Query: 419 DWLEHRKKMLTRSRI--EEYKNKLQSLSGEY--KGDEGKEGLINALYEYLQWV 467
            W    ++ L+  +          +    +     DE    ++ A   + + +
Sbjct: 418 RWYGFCQQRLSDPQWGAPNTLGDFEQARQQAWQGADEAGRRVLEAWQVHARQL 470


>gi|289628502|ref|ZP_06461456.1| exonuclease I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289648244|ref|ZP_06479587.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 2250]
 gi|320325491|gb|EFW81553.1| exonuclease I [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327221|gb|EFW83235.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330868768|gb|EGH03477.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330880763|gb|EGH14912.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330987779|gb|EGH85882.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 476

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 192/473 (40%), Positives = 277/473 (58%), Gaps = 9/473 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D +  +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+PKL++YL+  R+K ++++ + +  M PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D        T L +     +D+   +Y K   ++S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417

Query: 419 DWLEHRKKMLTRSR--IEEYKNKLQSLSGEYKGD--EGKEGLINALYEYLQWV 467
            W +  ++ L+              +   E        +  ++    +Y Q +
Sbjct: 418 RWQDFCQQRLSDPERGAPNTLKDFATALAECSLSAAPEQLEVLRQWQDYAQAL 470


>gi|240949271|ref|ZP_04753615.1| exonuclease I [Actinobacillus minor NM305]
 gi|240296387|gb|EER47031.1| exonuclease I [Actinobacillus minor NM305]
          Length = 514

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 218/471 (46%), Positives = 303/471 (64%), Gaps = 4/471 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F  YDYE+FG + A+DRPAQFAG+R D Q+  I    +F+CK   DYLP PEAV +TGI
Sbjct: 6   TFFFYDYESFGVNPAVDRPAQFAGIRTDDQFNIIGEPVMFYCKQTSDYLPSPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            PQ+   +G+ E EF+ RIH  FS PNTC+IGYNNIR+DD  +R  F+RNF+D Y +SW 
Sbjct: 66  LPQQCNAEGLSEPEFAARIHAEFSQPNTCVIGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLDV+RA YA  P+GI W   ++G  +FKL++L  ANGI H NAHDA +DVYA
Sbjct: 126 NGNSRWDLLDVVRACYALRPEGIDWVKDEEGIPNFKLENLTKANGIAHENAHDAMSDVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+++  LI+EK+PKLF++ +++R K ++ KLID   MTPLVHVSGM G  R NTA + P+
Sbjct: 186 TISMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNTAWVVPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHP  +++VI C+LSGD++   +  S  L  RL+T   EL +   PVP+K VH+NKCPI
Sbjct: 246 AWHPTNQNAVIVCDLSGDIQGLLNESSEVLKNRLYTKRTELSEQEKPVPLKLVHINKCPI 305

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQDVDSQL 360
           L P      E+  R GID ++CLENL  L+ Q         +        + S +V++ L
Sbjct: 306 LAPAKVLLPENAARLGIDREQCLENLKALKAQKSLVREKVIEIFTEDRTFAPSDNVETSL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+  D+  M  +   APE+L+   L F+D R+ +L F YRAR++P TL+  E+  W
Sbjct: 366 YDGFFSQADKNNMSILRSLAPEELAHHGLQFADLRVEKLLFHYRARHYPETLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
            ++  + L   R E++   +++L   +  DE K  L+  L  Y+  +   +
Sbjct: 426 QKYCHQQL-DLRAEQFAQSIETLFQIHHDDEEKVKLLEELTAYVAQISQDQ 475


>gi|21242349|ref|NP_641931.1| exonuclease I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107784|gb|AAM36467.1| exodeoxyribonuclease I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 481

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 199/477 (41%), Positives = 282/477 (59%), Gaps = 10/477 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    FF +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ ALR+GV EAE   RI +    P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL++Y    R+K     L+D+  M P++HVS  + ASR   A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAAALLDVIAMQPVLHVSQRYPASRLCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD  V   L    +A RL+    +L +G   +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + +   FER G+DH   +     LR     L ++ + +Y   +   ++  D 
Sbjct: 301 SPALVAWQHLRAADFERLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAAAAVNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D++++ ++  +AP++L  L   F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ W  +R++ L +        +E+Y  ++  L G +  D  K+ L++ L  +   +
Sbjct: 421 QERWNVYRRQRLLQDRGLGEVTLEQYHAQIADLRGAHPDDATKQALLDQLAAWGSDL 477


>gi|71737440|ref|YP_276156.1| exonuclease I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557993|gb|AAZ37204.1| exodeoxyribonuclease I [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 476

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 192/473 (40%), Positives = 277/473 (58%), Gaps = 9/473 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D +  +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLSEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+PKL++YL+  R+K ++++ + +  M PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D        T L +     +D+   +Y K   ++S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417

Query: 419 DWLEHRKKMLTRSR--IEEYKNKLQSLSGEYKGD--EGKEGLINALYEYLQWV 467
            W +  ++ L+              +   E        +  ++    +Y Q +
Sbjct: 418 RWQDFCQQRLSDPERGAPNTLKDFATALAECSLSAAPEQLEVLRQWQDYAQAL 470


>gi|126667153|ref|ZP_01738127.1| exonuclease I [Marinobacter sp. ELB17]
 gi|126628309|gb|EAZ98932.1| exonuclease I [Marinobacter sp. ELB17]
          Length = 507

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 206/480 (42%), Positives = 291/480 (60%), Gaps = 11/480 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T  F  +DYETFG D   DRP QFAGVR D +   IE   V FC+PADDYLP PEA  I
Sbjct: 26  LTPTFYWHDYETFGVDPLHDRPCQFAGVRTDSELNIIEEPLVIFCRPADDYLPAPEACLI 85

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+A ++G  EAEF   I+  FS P TC++GYN++RFDD  +RN  YRN  D Y  
Sbjct: 86  TGITPQQATQEGYPEAEFITMINSAFSQPGTCVVGYNSLRFDDEVTRNTLYRNLRDPYGR 145

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWDL+DV+R  Y   P+GI+WP + DG+ SF+L+DLA ANG+EH  AHDA +D
Sbjct: 146 EWQNGNSRWDLIDVVRLAYTLRPEGIEWPLKPDGSPSFRLEDLARANGLEHGQAHDAMSD 205

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V ATLAL  LI+E++P+LFE+    ++K   RK++D     P+ HVSG + AS+ + AL+
Sbjct: 206 VTATLALARLIKERQPRLFEFARANKSKQAARKMLDTSTRKPVFHVSGKYPASQGSCALV 265

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
           APVA H   K+ VI  +L  +     +    Q+ +R+FT+   L +G+   P+K + LNK
Sbjct: 266 APVAEHASNKNQVIVYDLRENPDELINASVDQIRERVFTAQSALPEGVRRFPLKAIQLNK 325

Query: 300 CPILMPIDYCKKEHFER---WGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQD 355
           CP+L P         ER     +D ++   +L +LRQ   +   R  A + + Y +   D
Sbjct: 326 CPVLAPATMLAALSPERLQQLNLDGEQMRRHLAILRQAGPDFGQRVAAAFERDYDTKLTD 385

Query: 356 VDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
            D Q+Y  GFF+  DR  +DR L   P+QL+     F+D+RL E+ FRYRARN+P TLS 
Sbjct: 386 PDEQIYAGGFFSPSDRTQLDRALAITPQQLAESEFQFTDQRLAEMLFRYRARNYPDTLSG 445

Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           ++ + W + R++ LT+       + EY  +LQ L  +    + +  ++  L+ Y + + P
Sbjct: 446 EDMERWEQFREQRLTQPAKGWLSLAEYGAELQRLMAKPDVTQQQRHILEELHLYGEAISP 505


>gi|58426647|gb|AAW75684.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 502

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 196/473 (41%), Positives = 279/473 (58%), Gaps = 10/473 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    FF +PADD LP P A  +
Sbjct: 22  MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 81

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T ITPQ ALR+GV EAE   RI +  S P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 82  TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 141

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 142 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 201

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL++Y    R+K     L+D+  M P++H+S  + ASR   A +
Sbjct: 202 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 261

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD  V   L   ++A RL+    +L +G   +P+KEVHLNK
Sbjct: 262 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 321

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + +   FER G+D    L     +R+    L ++ + +Y   +   +++ D 
Sbjct: 322 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 381

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D++++ ++  +AP +L  L   F D RL EL FRYRARN+P TLS  E
Sbjct: 382 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 441

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
           ++ W  +R++ L          +E+Y  ++  L   +  D  K+ L++ L  +
Sbjct: 442 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAW 494


>gi|160898944|ref|YP_001564526.1| exonuclease I [Delftia acidovorans SPH-1]
 gi|160364528|gb|ABX36141.1| Exodeoxyribonuclease I [Delftia acidovorans SPH-1]
          Length = 479

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 183/481 (38%), Positives = 280/481 (58%), Gaps = 14/481 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F  +DYETFG     DRPAQFAG+R D +  +I    +++C+PA DYLPDP++  I
Sbjct: 1   MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDAELNEIGEPVMWYCQPAGDYLPDPQSCLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+ L  G+ EA+F+ RI    +   T  +GYN IRFDD  +R +F+RN  D Y  
Sbjct: 61  TGITPQQCLEQGMPEAQFAARIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NG  RWDLLDV+R +YA  P+GI WP ++DG+ SFKL+DLA ANG+ H  AHDA +D
Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPEGIVWPKKEDGSPSFKLEDLARANGLLHEKAHDALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSN 236
           V AT+ L  LIR+ +P+LF++ +    K+++ + +    +  +  P +HVSGM    R  
Sbjct: 181 VRATIGLARLIRKVQPRLFDFAFSLHKKDRVLQEMGLPAEPAHARPFLHVSGMIRPERGC 240

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
            A++ P+A HP  K+ +I  +L+ D      +D   L  RLF+   +L +G+  +PIK +
Sbjct: 241 IAVMWPLATHPTNKNEIICWDLAQDPSELASIDVDTLRLRLFSRAADLPEGMQRLPIKSI 300

Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
           H+NK P+++  +         +WGID ++C+ +  + R   ++   ++A++         
Sbjct: 301 HVNKSPMVVGSLKTLSAAMAAQWGIDVEQCMGHAAIARDLPDMSALWRAVHQ-RPAQEGL 359

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
           D D  LY GF  + DR+ ++ +   + ++L+     F D RL EL FRYRARNFP +L+ 
Sbjct: 360 DADQDLYGGFVGNEDRRRLNHLRSLSAQELALDRTGFDDARLTELLFRYRARNFPASLNP 419

Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
            E+Q WL+H    L          E+    +  LS     DE  E ++ ALY+Y + ++P
Sbjct: 420 AERQRWLQHCAACLIEGKGGARTAEQMFAMVDQLSE--TADERGEEILGALYDYAEAIMP 477

Query: 470 K 470
           +
Sbjct: 478 E 478


>gi|289669559|ref|ZP_06490634.1| exonuclease I [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 481

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 198/477 (41%), Positives = 284/477 (59%), Gaps = 10/477 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    FF +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ ALR+G+ EAE   RI +  S P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TGITPQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLANANDVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL++Y    R+K     L+D+  M P++H+S  + ASR   A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD  V   L   ++A RL+    +L +G   +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLSRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + +   F+R G+DH+  L     LR+    L ++ + +Y   +   +++ D 
Sbjct: 301 SPALVAWQHLRAADFQRLGVDHEAVLAKAARLRELGPALAEKVRQVYGSERAPAAATNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D+ ++ ++  +AP +L  L   F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKHLLTQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420

Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ W  +R++ L   R      +E+Y  ++  L   +  D  K+ L++ L  +   +
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVILEQYHAQIADLRLAHPDDANKQALLDQLAAWGSDL 477


>gi|300690052|ref|YP_003751047.1| exodeoxyribonuclease I [Ralstonia solanacearum PSI07]
 gi|299077112|emb|CBJ49735.1| exodeoxyribonuclease I [Ralstonia solanacearum PSI07]
          Length = 489

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 185/477 (38%), Positives = 282/477 (59%), Gaps = 11/477 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T+ F+ +DYETFG     DRPAQFAG+R D +  +I      FC+P+ D+LPDP +  IT
Sbjct: 14  THTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLIT 73

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+  R G+ E  F++ I +  ++P T  +GYN+IRFDD  +R++F+RN  D Y   
Sbjct: 74  GITPQQCRRQGIPENRFAQAIERELAMPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYARE 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  +A  PDGI+WP   DG  SFKL+ L+ ANG+ H  AHDA +DV
Sbjct: 134 WQNECGRWDLLDVVRTTWALRPDGIEWPKNGDGKPSFKLEHLSQANGLLHEAAHDALSDV 193

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  LIR  +P+LF++ +  R K ++   I      PL+HVSGM+G  R   A++ 
Sbjct: 194 RATIALARLIRNAQPRLFDFCFALRKKERVLAEIG-DAPRPLLHVSGMYGVERGCLAVVW 252

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+ WHP  K+ ++  +L+ D     DL +  + +RLFT   EL +G   +P+K +H+NK 
Sbjct: 253 PLGWHPTNKNELLVWDLACDPAELFDLGAEAIRERLFTRSAELAEGTARLPVKSIHINKA 312

Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           PI++  +   +    ERWG+D      +  + +   ++R+ ++ +Y         DVD  
Sbjct: 313 PIVIGNLKTLQPAQAERWGVDFATIERHAAVAQGAPDMRETWRQVYA-RELEPIADVDQN 371

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GF ++ DR+ ++ +   + EQL+ L+  F+D RLPEL FRYRARNFP TL+E+E + 
Sbjct: 372 LYGGFVSNDDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEEEYEQ 431

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469
           W + R + L          + +  +++ L      + D   + ++  LY+Y Q ++P
Sbjct: 432 WEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLYDYAQQILP 488


>gi|188576332|ref|YP_001913261.1| exonuclease I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520784|gb|ACD58729.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 481

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 197/473 (41%), Positives = 280/473 (59%), Gaps = 10/473 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    FF +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ ALR+GV EAE   RI +  S P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TGITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL++Y    R+K     L+D+  M P++H+S  + ASR   A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD  V   L   ++A RL+    +L +G   +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + +   FER G+D    L     +R+    L ++ + +Y   +   +++ D 
Sbjct: 301 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D++++ ++  +AP +L  L   F D RL EL FRYRARN+P TLS  E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 420

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
           ++ W  +R++ L          +E+Y  ++  L   +  D  K+ L++ L  +
Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAW 473


>gi|114331862|ref|YP_748084.1| exonuclease I [Nitrosomonas eutropha C91]
 gi|114308876|gb|ABI60119.1| Exodeoxyribonuclease I subunit C [Nitrosomonas eutropha C91]
          Length = 486

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/476 (38%), Positives = 269/476 (56%), Gaps = 8/476 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T+    +DYET G +   DRP QFAG+R D    +I    V +CKPA D LP PEA  +T
Sbjct: 5   TSTLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLT 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A   G+ E EF   IH   + P TC +GYN +RFDD  +R   YRNFYD Y   
Sbjct: 65  GITPQMAATRGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFALYRNFYDPYARE 124

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWD++D+ R  +A  P+GI WP   +G  SF+L+D+  ANG+ H +AHDA +DV
Sbjct: 125 WQSGNSRWDVIDLARMTFALRPEGINWPVNGEGKPSFRLEDITAANGLMHDSAHDALSDV 184

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  L+R+++P+L+++L+  R+K +   L+D+   TP++H S M+ + +  T L+ 
Sbjct: 185 RATIALARLLRDRQPRLYDWLFRLRDKREASHLLDLTAHTPVLHTSRMYPSEQGCTTLVM 244

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+       +S++  +L  D   F  L+   L +RLFT   EL +G   +P+K + LNKC
Sbjct: 245 PLLPETGNTNSILVYDLRHDPAEFMQLNVDALVERLFTPKLELAEGQQRLPVKTIRLNKC 304

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P L P      E  +R G++ ++C ++  LL Q  +   R +  Y+        D D  L
Sbjct: 305 PALAPQKVLNDEIAKRIGLNDEQCQQHWQLLLQHPDFMQRIRQAYSNGKIFPENDADLAL 364

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGF  D DR +   +  + PE+L  L+  F D R  EL FRYRARNFP TLS +EK  W
Sbjct: 365 YDGFANDHDRNLFPLVRDSEPERLIDLSEEFQDGRYAELLFRYRARNFPDTLSAQEKHRW 424

Query: 421 LEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
             H ++ L          + +Y+ KL  L  +    + ++ ++N L  + + +  +
Sbjct: 425 QVHCRRQLGEDAINGSLTLNKYRQKLIQLRTDCPQ-QAQQEILNELEAWGRALAQE 479


>gi|152996402|ref|YP_001341237.1| exodeoxyribonuclease I [Marinomonas sp. MWYL1]
 gi|150837326|gb|ABR71302.1| Exodeoxyribonuclease I [Marinomonas sp. MWYL1]
          Length = 484

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 187/474 (39%), Positives = 273/474 (57%), Gaps = 8/474 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F  +D+ET G D A DRP QFAG+R D  +  I    +F+C+ A+D LP PEA  +TGI
Sbjct: 8   SFFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLTGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +PQ A R+G+ EAEF + +    S P TC +GYN IRFDD   R  FYRNF D Y   W 
Sbjct: 68  SPQDANREGLCEAEFMQAVEAELSQPGTCALGYNTIRFDDEVVRYGFYRNFIDPYTREWQ 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N  SRWD++D++R  YA  P+GI WP  +DG  S KL+ L  ANGI H  AHDA +DVY 
Sbjct: 128 NNCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKANGIAHEQAHDALSDVYG 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+ +  LIR K+PKLF Y +  R K++L++ ID+  + P +H+SGMFG +++  A + P+
Sbjct: 188 TIEIAKLIRSKQPKLFAYYFKMRQKHELQQFIDVVRLKPFLHISGMFGQAKNYAAFVVPI 247

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A HP  K+ VI  +L  D +   DL   ++  R+FT  +EL  L  +P+K +H NK P +
Sbjct: 248 APHPTNKNGVIIFDLMADAQPLIDLSVEEIRHRVFTRQEELGDLERLPLKVIHYNKSPAV 307

Query: 304 MPIDYCKK-EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P  + K  +  +R  +D   C  NL +++    L  +   ++ +      +D D  LY 
Sbjct: 308 APATFLKDVDVVKRLALDGSVCRHNLAIIKGHAGLAAKLSDVFMQEDRPIHKDPDVMLYS 367

Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
            GFF+  DR  M++I  T   QLS L + F DRRLPE+  RY  RN+P  LSE+++ +W 
Sbjct: 368 GGFFSREDRVRMEKIRSTPANQLSELAMSFDDRRLPEMLMRYIGRNYPDQLSEQQQFEWE 427

Query: 422 EHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           E+R+  L          +E+Y  +L  ++        ++ ++  L +Y Q + P
Sbjct: 428 EYRQVRLLEKDGGGSINMEQYFERLNLIAQTPDLSPAEQVMLQDLADYAQSIYP 481


>gi|325918073|ref|ZP_08180231.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535696|gb|EGD07534.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC
           35937]
          Length = 481

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 195/477 (40%), Positives = 282/477 (59%), Gaps = 10/477 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   I+    FF +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIDEPISFFVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ ALR+GV EAE   RI +  S P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TGITPQHALREGVSEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  P+GI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPEGITWPQREDGATSFKLEHLADANAVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL++Y    R+K     L+D+  M P++H+S  + ASR   A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMEPVLHISQRYPASRLCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD  V   L   ++A RL+    +L +G   +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + ++  F+R G+D    L     LR+    L ++ + +Y   +   ++  D 
Sbjct: 301 SPALVAWHHLREPDFQRLGLDRDAVLAKAARLRELGPALAEKVRQVYGNERAAAAAVNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D++++ ++  +APE+L  L     D RL EL FRYRARN+P TLS  E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPEELGALETRLRDPRLVELLFRYRARNWPQTLSFDE 420

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ W ++R+K L          +++Y  ++  L   +  D  K+ L++ L  +   +
Sbjct: 421 QERWNQYRRKRLLEDHGLGEVTLDQYHAQIADLRLAHPDDATKQALLDQLAAWGSDL 477


>gi|21231005|ref|NP_636922.1| exonuclease I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768990|ref|YP_243752.1| exonuclease I [Xanthomonas campestris pv. campestris str. 8004]
 gi|21112628|gb|AAM40846.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574322|gb|AAY49732.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 481

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 192/477 (40%), Positives = 279/477 (58%), Gaps = 10/477 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    FF +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ ALR+GV EAE   RI +    P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TGITPQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL++Y    R+K     L+D+  M P++H+S  + A+R   A +
Sbjct: 181 VYATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P++ HPR    VI  +L GD      L   ++A RL+    +L +G   +P+KEVHLNK
Sbjct: 241 LPLSRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + + + F+R G+D          LR+    L ++ + +Y   +   ++  D 
Sbjct: 301 APALVAWQHLRSDDFQRLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D++++ ++  +AP +L  +   F D RL EL FRYRARN+P TLS  E
Sbjct: 361 DASLYDGFLAEGDKRLLTQVRSSAPGELGAMEARFRDPRLIELLFRYRARNWPQTLSPHE 420

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            Q W ++R++ L          +E++  ++  L   +  D  K+ L++ L  +   +
Sbjct: 421 HQRWNDYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHPDDATKQSLLDQLAAWGSDL 477


>gi|190575052|ref|YP_001972897.1| exonuclease I [Stenotrophomonas maltophilia K279a]
 gi|190012974|emb|CAQ46606.1| putative exodeoxyribonuclease I [Stenotrophomonas maltophilia
           K279a]
          Length = 479

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/475 (40%), Positives = 292/475 (61%), Gaps = 8/475 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R +QFA +R D    +I++   FF +PADD LP P A  +
Sbjct: 1   MADSFLFYDLETFGQDPRRTRISQFAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+AL +G+ EAE   RI++  S P TC +GYN +RFDD + R   +RNF+D Y  
Sbjct: 61  TGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWDLLD++R + A  PDGIQWP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANHVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+ +  L ++ +P+L++Y    R+K  +  L+D+  M P++H+S  + ASR   A +
Sbjct: 181 VRATIGMARLFKQSQPRLWDYALKLRDKRFVGGLLDVAAMKPVLHISMRYPASRLCAAPV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+A HP   + VI  +L G++    +L +  +A+RL+    EL +G+  VP+KEVHLNK
Sbjct: 241 LPLAVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
            P L+  ++ + +   R G+D       +  LR     L ++ + +YN+P  ++  DVD+
Sbjct: 301 VPALIAWNHLRADDHARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDA 360

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
            LYDGF  + D+ ++     TAPEQL+ L   F D RLPEL FRYRARN P +L+  E+Q
Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPPERQ 420

Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W ++R++       L    + +Y+ +L +L+ E   D  ++ L+ +L ++ Q +
Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDTRRQALLQSLRDWGQHL 475


>gi|221066347|ref|ZP_03542452.1| Exodeoxyribonuclease I [Comamonas testosteroni KF-1]
 gi|220711370|gb|EED66738.1| Exodeoxyribonuclease I [Comamonas testosteroni KF-1]
          Length = 479

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 195/481 (40%), Positives = 284/481 (59%), Gaps = 14/481 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F  +DYETFG     DRPAQFAG+R D Q  +I    +++C+PA+DYLPDP++  I
Sbjct: 1   MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+AL++GV E EF+  I    +   T  +GYN IRFDD  +R +F+RN  D Y  
Sbjct: 61  TGITPQRALQEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLTDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NG  RWDLLDV+R +YA  PDGIQWP+++DG  SFKL+DLA ANG+ H  AHDA +D
Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPDGIQWPTKEDGTPSFKLEDLARANGLLHEQAHDALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSN 236
           V AT+AL  LIREK+P+LF++ +    K+   + +      ++  P +HV+GM   +R  
Sbjct: 181 VRATIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGC 240

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
            A++ P+A HP  K+ VI  +L+ D      +    L  RLFT   EL +G+  +PIK +
Sbjct: 241 LAVMWPLATHPTNKNEVICWDLAADPTELSGISIEDLRLRLFTRQAELPEGVSRLPIKSI 300

Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
           H+NK P+++  +        E+WG+D +  + +  + R   ++  ++KA++         
Sbjct: 301 HVNKSPMVVGSLKTLSPAMAEKWGVDMELAMRHAAMARDLPDMSAQWKAVF-TREAGEPL 359

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
           D D  LY GF  + DR+ ++RI R +P++L+     F D RL EL +RYRARNFP TL  
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELVWRYRARNFPQTLDA 419

Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
            E+Q W +HR   L          E+    + SLS     DE  E ++  LY+Y   ++P
Sbjct: 420 GEQQRWEQHRAACLIEGQGGARTAEQMFAMIDSLSE--AADERAEEILGELYDYADAMVP 477

Query: 470 K 470
           +
Sbjct: 478 E 478


>gi|34496784|ref|NP_900999.1| exonuclease I [Chromobacterium violaceum ATCC 12472]
 gi|34102639|gb|AAQ59004.1| exodeoxyribonuclease I [Chromobacterium violaceum ATCC 12472]
          Length = 472

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/470 (38%), Positives = 274/470 (58%), Gaps = 6/470 (1%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+N  F  +DYETFG     DRP+QFAG+R D +  +I    + +C+PA DYLP  +A  
Sbjct: 1   MSNHTFFWHDYETFGAVPRQDRPSQFAGIRTDAELNEIGEPVMLYCRPAPDYLPTLQACL 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGITPQ   + GV E EF+  I +  + P T  +GYN++RFDD  +R +F+RN  D Y 
Sbjct: 61  LTGITPQLCRQQGVAEHEFAGVIERELATPATIGVGYNSLRFDDEVTRFLFWRNLIDPYA 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             W N   RWDLLD++RA YA  PDGI WP  +DG TSFKL+ L+ ANG+ H +AHDA +
Sbjct: 121 REWQNHCGRWDLLDLVRATYALRPDGIVWPKHEDGRTSFKLEHLSAANGLAHASAHDALS 180

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DV AT+AL  LIR+++PKLF+Y    R K+ ++  + + +  P++HVSGM+G  R N A+
Sbjct: 181 DVRATIALARLIRQRQPKLFDYYLTLRKKDAVKVQLSLHDPKPVLHVSGMYGVERGNLAV 240

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
           + P+A HP   + VI  +L+ D    + L +  + +R+FT  DEL +G+  +P+K +H+N
Sbjct: 241 VWPLAAHPTNANEVIVWDLAHDPAELRGLSADDIRQRMFTRADELPEGVARLPVKTIHIN 300

Query: 299 KCP-ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           K P ++  +     ++  RWG+D      +    R   +L   ++ +Y +        VD
Sbjct: 301 KSPFVVANLKALGDDNAARWGMDLAAIHRHAEAARALPDLSALWRRVYQREAGEPQD-VD 359

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
             LY GF ++ DR+ + ++ R +  QL+     F D +L EL FRYRARNFP TLS  E+
Sbjct: 360 QNLYGGFVSNNDRKALQKMRRLSAAQLAGEMALFEDPQLAELLFRYRARNFPDTLSGDEQ 419

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           + W    +  L +     ++ +L  L    +  +G+  L+  + +Y   +
Sbjct: 420 KRWKAWCQARLAQ-SWPAFQQELAELRA-GELTDGQRNLLQQVADYAASL 467


>gi|77460659|ref|YP_350166.1| exonuclease I [Pseudomonas fluorescens Pf0-1]
 gi|77384662|gb|ABA76175.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf0-1]
          Length = 476

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 189/475 (39%), Positives = 285/475 (60%), Gaps = 14/475 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 YDYET G +   DRP Q AG+R D +  +I++    +C+P++D LP P A  IT
Sbjct: 1   MTSIFWYDYETTGINPRCDRPLQVAGIRTDHELNEIDAPVNLYCQPSEDILPHPAACAIT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP +    G+ EA+F  R+H   + P TC  GYN +RFDD  +R   YRNF+D Y   
Sbjct: 61  GITPSRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDL+DV+RA YA  PDG+ WP+ D+G  + KL+ L  AN I+H NAH+A +DV
Sbjct: 121 WQGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGKVTLKLERLTAANNIDHGNAHEALSDV 180

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  LIREK+PKL+++L+  R+K ++   I +  + P+VH+SG F A+RS   ++ 
Sbjct: 181 RATIALARLIREKQPKLYDWLFQLRSKQKVMDQIRL--LQPMVHISGRFSAARSYVGVVL 238

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHPR K+++I C+L  D +   DLD+  L +RL+T  D+L +G +PVP+K +H+NKC
Sbjct: 239 PLAWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDDLAEGELPVPLKLIHINKC 298

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQ 359
           P++ P+   + +  +R G+D          L       +D+  AIY     +S++D + Q
Sbjct: 299 PVVAPLSVLRADDQQRLGLDMALYQARALRLSDAQQVWKDKVSAIYASEDFTSNEDPEQQ 358

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF  D DR++ +++  T P QL+    PF D RLPEL FRYRARNFP TL+ +E++ 
Sbjct: 359 LYDGFIGDRDRRLCEQVRATDPGQLAREQWPFDDERLPELLFRYRARNFPDTLNFEEQER 418

Query: 420 WLEHRKKMLT------RSRIEEYKNKLQ-SLSGEYKGDEGKEGLINALYEYLQWV 467
           W    ++ L+       + ++ +   ++  L         +  ++     Y+Q +
Sbjct: 419 WRIFCRQRLSAPEWGAPNTLQSFAEAMEQWLLSAA---PMQAEVLVEWQNYVQAL 470


>gi|264679055|ref|YP_003278962.1| exonuclease-like protein [Comamonas testosteroni CNB-2]
 gi|262209568|gb|ACY33666.1| Exonuclease-like protein [Comamonas testosteroni CNB-2]
          Length = 479

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 190/481 (39%), Positives = 282/481 (58%), Gaps = 14/481 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F  +DYETFG     DRPAQFAG+R D Q  +I    +++C+PA+DYLPDP++  I
Sbjct: 1   MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+AL +GV E EF+  I    +   T  +GYN IRFDD  +R +F+RN  D Y  
Sbjct: 61  TGITPQRALEEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NG  RWDLLDV+R +YA  P+GIQWP+++DG  SF+L+DLA ANG+ H  AHDA +D
Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPEGIQWPTKEDGTPSFRLEDLARANGLLHEQAHDALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSN 236
           V AT+AL  LIREK+P+LF++ +    K+   + +      ++  P +HV+GM   +R  
Sbjct: 181 VRATIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGC 240

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
             ++ P+A HP  K+ VI  +L+ D      +   +L  RLFT   EL +G+  +PIK +
Sbjct: 241 LGVMWPLATHPTNKNEVICWDLAADPAELSGISIEELRLRLFTRQAELPEGVTRLPIKSI 300

Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
           H+NK P+++  +        E+WG+D +  +++  + R   ++  ++KA++         
Sbjct: 301 HVNKSPMVVGSLKTLSPAMAEKWGVDMELAMQHAAIARDLPDMSAQWKAVF-TREAGEPL 359

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
           D D  LY GF  + DR+ ++RI R +P++L+     F D RL EL +RYRARNFP TL  
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELAWRYRARNFPQTLDA 419

Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
            E   W +HR   L          E+    + +LS     DE  E ++  LY+Y   ++P
Sbjct: 420 GELLRWEQHRAACLIEGQGGARTAEQMFTMIDALSE--SVDERGEEILGDLYDYGSNLVP 477

Query: 470 K 470
           +
Sbjct: 478 E 478


>gi|330957883|gb|EGH58143.1| exonuclease I [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 476

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 197/475 (41%), Positives = 282/475 (59%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D    +I      +C+P+DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDADLNEIAPPVNLYCQPSDDILPHPAACLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R   YRNF+D Y  
Sbjct: 61  TGITPTLLAEKGLSEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+P+L++YL+  R+K +++  I +  M PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFALRSKQKVQDQIRL--MQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D     D D+  L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLDQDASTLKQRLYTRHEALSEGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  ER  +D          L +     +D+  A+Y K   ++S+D + 
Sbjct: 298 CPVIAPMGVLRSEDQERLQLDMAGYESRAAALNESREVWQDKVLALYGKEDFTASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF AD DR++ +++    PE+L+    PF D RLPEL FRYRARNFPHTLS +E+Q
Sbjct: 358 QLYDGFIADRDRRLCEQVRLADPERLAGDAWPFDDTRLPELLFRYRARNFPHTLSREEQQ 417

Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W    ++ L        + ++++   L  LS        +  ++    +Y Q +
Sbjct: 418 RWQHFCQERLRNPEWGAPNTLQDFTKALIELSL--NATPDQLDVLRQWQDYAQLL 470


>gi|78047196|ref|YP_363371.1| exonuclease I [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035626|emb|CAJ23314.1| exodeoxyribonuclease I [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 481

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 196/477 (41%), Positives = 280/477 (58%), Gaps = 10/477 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    FF +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ ALR+GV EAE   RI +    P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL++Y    R+K     L+D+  M P++H+S  + ASR   A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD  V   L    +A RL+    +L +G   +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + +   F+R G+DH   +     LR     L ++ + +Y   +   ++  D 
Sbjct: 301 SPALVAWQHLRAADFQRLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAVAAVNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D++++ ++  +AP++L  L   F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ W  +R++ L          +E+Y  ++  L   +  D  K+ L++ L  +   +
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRRTHSDDATKQALLDQLAAWGSDL 477


>gi|313500409|gb|ADR61775.1| SbcB [Pseudomonas putida BIRD-1]
          Length = 477

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 188/473 (39%), Positives = 283/473 (59%), Gaps = 9/473 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    +DYET G +   DRP Q AG+R D    +I+     +C+P+DD LP P A  +
Sbjct: 1   MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ     G+ EAEF  R+H   + P TC  GYN +RFDD  +R   YRNF+D Y  
Sbjct: 61  TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+D++R  YA  P+GIQWP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPEGIQWP-QQDGRTSLRLELLSKANGIDHGHAHEALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIR+K+PKL+++L+  R+K+++ + I +  + PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHPR ++++I C+L  +        +  L +RL+T HDEL +G +PVP+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   +    +R G+D          L  QQ   +++ + IY K   S S+D + 
Sbjct: 298 CPVVAPLSVLRPVDQQRLGLDLTLLQSRGEQLANQQAQWQEKLEHIYGKDEFSPSEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLY+GF  D DR++ +++    P QLS  +  F D RLPEL FRYRARNFP TL+ +E+Q
Sbjct: 358 QLYEGFIGDRDRRLCEQVRALEPAQLSHGHWMFDDPRLPELLFRYRARNFPETLTGEERQ 417

Query: 419 DWLEHRKKMLTRSRI--EEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWV 467
            W    ++ L+  +          +    +     DE    ++ A   + + +
Sbjct: 418 RWYGFCQQRLSDPQWGAPNTLGDFEKARQQAWEGADEAGRRVLEAWQLHARQL 470


>gi|170720191|ref|YP_001747879.1| exonuclease I [Pseudomonas putida W619]
 gi|169758194|gb|ACA71510.1| Exodeoxyribonuclease I [Pseudomonas putida W619]
          Length = 478

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 184/474 (38%), Positives = 277/474 (58%), Gaps = 9/474 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    +DYET G +   DRP Q AGVR D +  +I+     +C+P+DD LP P A  +
Sbjct: 1   MTSSIFWHDYETTGINPRCDRPLQVAGVRTDFELNEIDEPISLYCRPSDDILPHPAACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+    G+ EAEF  R+H   ++P TC  GYN +RFDD  +R   YRNF+D Y  
Sbjct: 61  TGITPQQLASQGLGEAEFMTRVHAQLALPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+R  YA  P+GI WP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDVVRTAYALRPEGIVWP-QQDGRTSLRLELLSKANGIDHGHAHEALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIR K+PKL+E+L+  R+K+++ + I +  + PLVH+SG F A+RS   ++
Sbjct: 180 VRATIALARLIRHKQPKLYEWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARSYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNK 299
            P+AWHPR ++++I C+L  +        +  + +RL+T  +EL     P+P+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLQQETLPLLRESAEVIRERLYTRREELSDGQLPIPLKLVQINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   +    +R GID          L  QQ   + + + IY K     S+D + 
Sbjct: 298 CPVVAPLSVLRAADQQRLGIDLALVQSRAEELANQQNAWQHKLEHIYGKEDFVPSEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLY+GF  D DR++ +++    P QL   +  F D R+PEL FRYRARNFP TL+ +E+Q
Sbjct: 358 QLYEGFLGDRDRRLCEQVRTLDPAQLGQGHWMFDDPRMPELLFRYRARNFPETLNSEERQ 417

Query: 419 DWLEHRKKMLTRSRI--EEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVI 468
            W    ++ L+  +          +          DE    +++A   + + + 
Sbjct: 418 RWYGFCQQRLSDPQWGAPNTLGDFEQARQSAWANADEAGRQVLDAWQAHARQLA 471


>gi|229592327|ref|YP_002874446.1| exonuclease I [Pseudomonas fluorescens SBW25]
 gi|229364193|emb|CAY51862.1| exodeoxyribonuclease I [Pseudomonas fluorescens SBW25]
          Length = 475

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 191/473 (40%), Positives = 275/473 (58%), Gaps = 9/473 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 YDYET G +   DRP Q AG+R D +  +I +    +C+P+DD LP P A  IT
Sbjct: 1   MTSIFWYDYETTGINPRSDRPLQVAGIRTDLELNEIGAPVNLYCQPSDDILPHPVACAIT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP      G+ EA+F  R+H   + P TC  GYN +RFDD  +R   YRNF+D Y   
Sbjct: 61  GITPAILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDL+DV+R  YA  P+GI+WP + DG  + KL+ L  ANGI+H  AHDA +DV
Sbjct: 121 WQGGNSRWDLIDVVRTAYALRPEGIEWP-QQDGRVTLKLERLTEANGIDHGQAHDALSDV 179

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL   IREK+PKL+E+L+  R+K ++   + +  + P+VH+SG F A R    ++ 
Sbjct: 180 RATIALARRIREKQPKLYEWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAERHYLGVVL 237

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHPR ++++I C+L  D +   DLD+  L +RL+T  + L +G +PVP+K VH+N+C
Sbjct: 238 PLAWHPRNRNALIVCDLGLDPQGLLDLDADTLRQRLYTRREALAEGELPVPLKLVHINRC 297

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           P++ P++  + E  ER  +D     E    L   Q   RD+  AIY +   ++S D + Q
Sbjct: 298 PVVAPLNVLRAEDRERLHLDMNIYQERALRLTDAQEVWRDKLAAIYAEEDFAASADPEQQ 357

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF  D DR++ +++    P QL+    PF D RLPEL FRYRARNFP TL+ +E+Q 
Sbjct: 358 LYDGFIGDRDRRLCEQVRTAEPAQLARQQWPFDDHRLPELLFRYRARNFPDTLNSEEQQR 417

Query: 420 WLEHRKKMLTRSRI--EEYKNKLQSLSGEYKGDEG--KEGLINALYEYLQWVI 468
           W    ++ L+          +       E+       + G++    EY   + 
Sbjct: 418 WKLFCQQRLSSPEWGAPNTLDAFNQARQEFAVSATSFQHGVLEQWQEYADTLA 470


>gi|56460478|ref|YP_155759.1| exonuclease I [Idiomarina loihiensis L2TR]
 gi|56179488|gb|AAV82210.1| Exonuclease I [Idiomarina loihiensis L2TR]
          Length = 479

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 202/474 (42%), Positives = 281/474 (59%), Gaps = 8/474 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G +  +DRPAQFAG+R D  +  I      + +P  D+LP+PEA  IT
Sbjct: 6   QETFYWHDYETWGANPLVDRPAQFAGLRTDTDFNVIGRPLTLYAQPTPDFLPNPEATLIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A + GV EAEFS+ I   F  PNT IIGYNNIRFDD  +R +FYRNFYD Y +S
Sbjct: 66  GITPQLAAKQGVGEAEFSKAIANEFQKPNTTIIGYNNIRFDDEVTRLLFYRNFYDPYEYS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDL+DV+RA +A  PDGI WP   DG  S KL+ L++AN IEH  AHDA +DV
Sbjct: 126 WQNGNSRWDLIDVVRACFALRPDGINWPENSDGQPSLKLEHLSVANNIEHGQAHDAMSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ L  LI EK+PKL+++ Y  R K +L  L + Q   PL HVSG +G +    + I 
Sbjct: 186 YATIGLAKLISEKQPKLWQWAYSIRRKQKLLNLFNWQAPEPLAHVSGFYGTANRYLSAIL 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNK 299
           P+ +HP+   +V+  +L      F D    +L +  +TS  EL+  GL    I+ +HL +
Sbjct: 246 PLGFHPKQNSNVVAWDLRVPPMDFADKSVEELTELTYTSRRELEEQGLQKSGIQNIHLGR 305

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDS 358
           CP L PI     E  +   +D      N   L++ ++ RD+   ++ +    +   DVD 
Sbjct: 306 CPFLAPIKTISAEAADSAALDTAALETNAKWLQENSDFRDKLMQVFEQTKEFAPRTDVDH 365

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           Q+YDGFF+  D++ M+ I  + P QL+ L L F D+R+P L FRYRARN+P TLS+KE  
Sbjct: 366 QIYDGFFSPQDKKHMEIIRSSEPHQLAGLELDFQDKRMPALLFRYRARNYPSTLSDKELN 425

Query: 419 DWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W    ++ L          E +  KL+ L+ +++ D  K  L+ +LY+Y   +
Sbjct: 426 KWRLFCQQRLIEPPEGLLSAEGFALKLEDLANQHQEDAHKLRLLKSLYDYAASL 479


>gi|120611894|ref|YP_971572.1| exonuclease I [Acidovorax citrulli AAC00-1]
 gi|120590358|gb|ABM33798.1| Exodeoxyribonuclease I subunit C [Acidovorax citrulli AAC00-1]
          Length = 478

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 188/479 (39%), Positives = 273/479 (56%), Gaps = 14/479 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F  +DYETFG D   DRPAQFAG+R D    +I    + +C+PA DYLPDPE+  +T
Sbjct: 1   MHTFFWHDYETFGADPRRDRPAQFAGIRTDADLNEIGEPVMIYCRPAPDYLPDPESCLLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ  L  G+ E EF+ RI    + P T  +GYN IRFDD  +R +F+RN  D Y   
Sbjct: 61  GITPQLCLERGLPEHEFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYARE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  YA  PDGI+WP ++DG+ S KL+ L+ ANG+ H  AHDA +DV
Sbjct: 121 WQNECGRWDLLDVVRLTYALRPDGIEWPRKEDGSPSLKLEHLSRANGLVHEAAHDALSDV 180

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSNT 237
            AT+AL  LIRE++P+LFE+    R K+++   +          P +HVSGMF A R   
Sbjct: 181 RATIALARLIRERQPRLFEFALGLRRKDRVAAELRLPATADTARPFLHVSGMFPADRGCL 240

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296
            ++ P+A HP  ++ +I  +L+ D      LD+ ++ +RLFT   +L +G+  +P+K VH
Sbjct: 241 GILWPLASHPTNRNELIAWDLAHDPSELAGLDAARIRERLFTRTADLPEGVARLPVKSVH 300

Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           LNK P+++  ++       +RWGID +R   +  L R   ++   +  ++      +  D
Sbjct: 301 LNKSPMVVGNVNTLTPAMAQRWGIDVERAAAHAELARALPDMSAIWAEVFA-RPREAPAD 359

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           VD  LY GF  + DR+ + R+    P++L+     F D RL EL +R+RARNFP TL E 
Sbjct: 360 VDQDLYGGFVGNEDRRRLQRLRTLPPQELALARPGFDDERLEELAWRFRARNFPETLDEA 419

Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           +++ W   R   L          +    +L +L      DE  E ++ ALYEY + + P
Sbjct: 420 DRERWEALRVARLMEGEGGGLTFDALFARLDTLGE--TADERGEAILGALYEYAESIAP 476


>gi|148549564|ref|YP_001269666.1| exonuclease I [Pseudomonas putida F1]
 gi|148513622|gb|ABQ80482.1| Exodeoxyribonuclease I subunit C [Pseudomonas putida F1]
          Length = 477

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 186/473 (39%), Positives = 283/473 (59%), Gaps = 9/473 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    +DYET G +   DRP Q AG+R D    +I+     +C+P+DD LP P A  +
Sbjct: 1   MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ     G+ EAEF  R+H   + P TC  GYN +RFDD  +R   YRNF+D Y  
Sbjct: 61  TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+D++R  YA  P+GI+WP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPEGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIR+K+PKL+++L+  R+K+++ + I +  + PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHPR ++++I C+L  +        +  L +RL+T HDEL +G +PVP+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   +    +R G+D          L  QQ   +++ + IY K   + S+D + 
Sbjct: 298 CPVVAPLSVLRPVDQQRLGLDLTLLQSRGEQLANQQAQWQEKLEHIYGKDEFAPSEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLY+GF  D DR++ +++    P QLS     F D RLPEL FRYRARNFP TL+ +E+Q
Sbjct: 358 QLYEGFIGDRDRRLCEQVRALEPAQLSHGQWMFDDPRLPELLFRYRARNFPETLTPEERQ 417

Query: 419 DWLEHRKKMLTRSRI--EEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWV 467
            W +  ++ L+  +          +    +     DE    ++ A   + + +
Sbjct: 418 RWYDFCQQRLSEPQWGAPNTLGDFEQARQQAWEGADEAGRRVLEAWQLHARQL 470


>gi|325928185|ref|ZP_08189394.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118]
 gi|325541481|gb|EGD13014.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118]
          Length = 481

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 196/477 (41%), Positives = 280/477 (58%), Gaps = 10/477 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    FF +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ ALR+GV EAE   RI +    P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL++Y    R+K     L+D+  M P++H+S  + ASR   A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD  V   L    +A RL+    +L +G   +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + +   F+R G+DH   +     LR     L ++ + +Y   +   ++  D 
Sbjct: 301 SPALVAWQHLRAADFQRLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAVAAVNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D++++ ++  +AP++L  L   F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ W  +R++ L          +E+Y  ++  L   +  D  K+ L++ L  +   +
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRRTHPDDATKQALLDQLAAWGSDL 477


>gi|26988099|ref|NP_743524.1| exonuclease I [Pseudomonas putida KT2440]
 gi|24982826|gb|AAN66988.1|AE016327_3 exodeoxyribonuclease I [Pseudomonas putida KT2440]
          Length = 477

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 186/473 (39%), Positives = 282/473 (59%), Gaps = 9/473 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    +DYET G +   DRP Q AG+R D    +I+     +C+P+DD LP P A  +
Sbjct: 1   MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ     G+ EAEF  R+H   + P TC  GYN +RFDD  +R   YRNF+D Y  
Sbjct: 61  TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+D++R  YA  P+GI+WP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPEGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIR+K+PKL+++L+  R+K+++ + I +  + PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHPR ++++I C+L  +        +  L +RL+T HDEL +G +PVP+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   +    +R G+D          L  QQ   +++ + IY K   + S+D + 
Sbjct: 298 CPVVAPLSVLRPVDQQRLGLDLTLLQSRGEQLANQQAQWQEKLEHIYGKDEFAPSEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLY+GF  D DR++ +++    P QLS     F D RLPEL FRYRARNFP TL+ +E+Q
Sbjct: 358 QLYEGFIGDRDRRLCEQVRALEPAQLSHGQWMFDDPRLPELLFRYRARNFPETLTGEERQ 417

Query: 419 DWLEHRKKMLTRSRI--EEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWV 467
            W    ++ L+  +          +    +     DE    ++ A   + + +
Sbjct: 418 RWYGFCQQRLSEPQWGAPNTLGDFEKARQQAWEGADEAGRRVLEAWQLHARQL 470


>gi|285018531|ref|YP_003376242.1| exodeoxyribonucleaseIprotein [Xanthomonas albilineans GPE PC73]
 gi|283473749|emb|CBA16252.1| putative exodeoxyribonucleaseIprotein [Xanthomonas albilineans]
          Length = 492

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 200/475 (42%), Positives = 283/475 (59%), Gaps = 8/475 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG D    R AQFA VR D    +IE    FF +PADD LP P A  I
Sbjct: 14  MPDSFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPVATLI 73

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+ALR+G+ EA+   RI +  + P TC +GYN++RFDD + R+  +RNF+D Y  
Sbjct: 74  TGITPQQALREGINEADAFARIAEQMAQPQTCTLGYNSLRFDDEFIRHGLFRNFHDPYER 133

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLD++R ++A  PDGI WP R+DGATSFKL+ LALANG+   +AH+A +D
Sbjct: 134 EWRGGNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVRDGDAHEALSD 193

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    R  +P+L+EY    R+K     L+D+  M P++HVS  + ASR   A +
Sbjct: 194 VYATIGMARHFRRCQPRLWEYALKLRDKRFCASLLDVTAMQPVLHVSMRYPASRLCAAPV 253

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    V+  +L GD+         ++A RL+T   +L +G   + +KEVHLNK
Sbjct: 254 LPLTRHPRIDSRVVVFDLEGDINTLLRCTPEEIADRLYTPQADLPEGEQRIALKEVHLNK 313

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
            P L+   + ++  FER GID  + L     +R+    L ++ + ++     +   DVD+
Sbjct: 314 APALVAWAHLREAEFERLGIDPAQALAKAARMREAGPTLAEKVRRVFASERATMPADVDA 373

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
            LYDGF AD D++ M ++  TAP QL+ L   F D RLPEL FRYRARN+P TLS  E+ 
Sbjct: 374 SLYDGFLADTDKRAMAQVRATAPMQLAPLEHGFRDPRLPELLFRYRARNWPQTLSIAEQT 433

Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W ++R++       L+    E Y  +L  L   +  D  K+ L++ L  + Q +
Sbjct: 434 RWDDYRRRRLEVDNGLSELTFETYAAQLADLRLAHPEDATKQALLDQLAAWGQDL 488


>gi|104780361|ref|YP_606859.1| exonuclease I [Pseudomonas entomophila L48]
 gi|95109348|emb|CAK14048.1| exonuclease I [Pseudomonas entomophila L48]
          Length = 476

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 185/475 (38%), Positives = 281/475 (59%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M++    +DYET G +   DRP Q AGVR D    +IE+    +C+P+DD LP P A  +
Sbjct: 1   MSSSIFWHDYETTGINPRCDRPLQMAGVRTDLDLNEIEAPINLYCRPSDDILPHPAACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+    G+ EAEF  R+H   + P TC  GYN +RFDD  +R   YRNF+D Y  
Sbjct: 61  TGITPQQLASQGLCEAEFMTRVHTELARPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+R  YA  P+GI WP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDVVRTAYALRPEGIVWP-QQDGRTSLRLELLSKANGIDHGHAHEALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+ L  LIR+++PKL+++L+  R+K+++ + + +  + PLVHVSG F A R+   ++
Sbjct: 180 VRATIGLARLIRDRQPKLYDWLFQLRSKHKVMEQVRL--LQPLVHVSGRFSAERNYIGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHPR ++++I C+L  D        +  L +RL+T  +++ +G +PVP+K VH+N+
Sbjct: 238 LPLAWHPRNRNALIVCDLGQDSAPLLKESAQVLRQRLYTRREDMAEGELPVPLKLVHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + +  +R GID      +   L  QQ   RD+   I+ +   + ++D + 
Sbjct: 298 CPVVAPLSVIRAQDQQRLGIDMSTLQSHADHLANQQATWRDKLDIIFEEEAFAPTEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++    P QL   +  F D RLPEL FRYRARNF  TL E+E  
Sbjct: 358 QLYDGFIGDRDRRLCEQVRGVDPAQLGQGHWMFDDPRLPELLFRYRARNFADTLDEQELA 417

Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W    ++ L+         + +++   QS       DE    ++ A   +   +
Sbjct: 418 RWHGFCRERLSDPKWGAPNTLGDFEVACQSSLA--NADEAGRRVLEAWQAHAGQL 470


>gi|312962787|ref|ZP_07777274.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6]
 gi|311282814|gb|EFQ61408.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6]
          Length = 475

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 187/475 (39%), Positives = 273/475 (57%), Gaps = 13/475 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 YDYET G +   DRP Q AG+R D +  +I      +C+P DD LP P A  IT
Sbjct: 1   MTSIFWYDYETTGINPRNDRPLQVAGIRTDLELNEIGPPVNLYCRPGDDILPHPAACAIT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP      G+ EA+F  R+H   + P TC  GYN +RFDD  +R   YRNF+D Y   
Sbjct: 61  GITPGVLDEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDL+DV+R  YA  P+GI+WP + DG  + KL+ L  AN I+H  AHDA +DV
Sbjct: 121 WQGGNSRWDLIDVVRTAYALRPEGIEWP-QQDGRVTLKLERLTAANAIDHGQAHDALSDV 179

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  L+REK+P+L+++L+  R+K ++   + +  + P+VH+SG F A R    ++ 
Sbjct: 180 RATIALARLVREKQPRLYDWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAERHYLGVVL 237

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHPR ++++I C+L  D +   D D+  L +RL+T  D+L +G +PVP+K VH+N+C
Sbjct: 238 PLAWHPRNRNALIVCDLGLDPQGLLDTDAETLRQRLYTRRDDLAEGELPVPLKLVHVNRC 297

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           P++ P+   + E  ER  +D          L   Q   RD+  AIY +   +++ D + Q
Sbjct: 298 PVVAPLSVLRAEDRERLQLDMAVYQARALRLTDAQELWRDKLAAIYAQEEFAANADPEQQ 357

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF  D DR++ +++    P QL+    PF D RLPEL FRYRARNFP TL  +E+Q 
Sbjct: 358 LYDGFIGDRDRRLCEQVRMAEPSQLARAQWPFDDHRLPELLFRYRARNFPDTLDSEEQQR 417

Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W    ++ L+         +E +K     L+        ++ ++    EY   + 
Sbjct: 418 WKLFCQQRLSNPEWGAPNTLEAFKQARLELAVSAT--PFQQQVLGQWQEYADSLA 470


>gi|319762823|ref|YP_004126760.1| exodeoxyribonuclease i [Alicycliphilus denitrificans BC]
 gi|330824902|ref|YP_004388205.1| exodeoxyribonuclease I [Alicycliphilus denitrificans K601]
 gi|317117384|gb|ADU99872.1| Exodeoxyribonuclease I [Alicycliphilus denitrificans BC]
 gi|329310274|gb|AEB84689.1| Exodeoxyribonuclease I [Alicycliphilus denitrificans K601]
          Length = 478

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 189/479 (39%), Positives = 279/479 (58%), Gaps = 14/479 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG D   DRPAQFA +R D Q  +I    + +C+PA+DYLPDP++  IT
Sbjct: 1   MHTFLWHDYETFGTDTRRDRPAQFAAIRTDAQLNEIGEPLMLYCRPANDYLPDPQSCLIT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ  L  GV E +F+ RI    ++P T  +GYN IRFDD  +R +F+RN  D Y   
Sbjct: 61  GITPQLCLEKGVPEHQFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYARE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  YA  PDGI+WP   DG TSF+L++L  ANG+ H  AHDA +DV
Sbjct: 121 WQNQCGRWDLLDVVRLAYALRPDGIEWPV-ADGKTSFRLENLTKANGLAHEAAHDALSDV 179

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSNT 237
            AT+AL  L+R + P+LF++    R K+++   +      Q   P +HVSGMFGA R   
Sbjct: 180 RATIALARLVRARNPRLFDFALGLRKKDRVAAELRLPATAQTARPFLHVSGMFGAERGCL 239

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296
           A++ P+A HP  K+ ++  +L+ D      L + ++ +RLFT   +L +G+  +P+K VH
Sbjct: 240 AVMWPLASHPTNKNELLAWDLAHDPAELATLSADEIRQRLFTRAADLPEGVTRLPLKSVH 299

Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           LNK P+++  ++       +RWG+D  +   +    R+  ++   +  ++ +P      D
Sbjct: 300 LNKSPMVVGNVNTLTPAVAQRWGLDMAQAARHAEAARRLPDMSAIWAQVFQRPQEG-PVD 358

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           VD  LY GF  + DR+ ++R+   +PE+L+     F D RL EL +RYRARNFP TLS +
Sbjct: 359 VDQDLYGGFLGNEDRRRLNRLRALSPEELARERPGFDDERLAELVWRYRARNFPQTLSPE 418

Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           E + W  HR  ML          +    +L  L  +   DE  E ++ A+Y+Y + + P
Sbjct: 419 EHERWEAHRVAMLVEGEGGGLTFDALFERLDELGEQ-ADDERTEAILGAIYDYAEGIAP 476


>gi|28871453|ref|NP_794072.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28854704|gb|AAO57767.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 476

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 189/475 (39%), Positives = 278/475 (58%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D +  +I      +C+P+DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   + P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  P+GI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+P+L++YL+  R K ++++ I +  M PLVH+SG F A+RS   ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHL--MKPLVHISGRFSAARSYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L +RL+T  D LK G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D          L +     +D+ + +Y K    +S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSESLEVWQDKLQVLYGKDDFVASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLP+L FRYRARNFP TLS  E+ 
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSADEQH 417

Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W +  ++ L+         ++++ + L   S        +  ++    ++   +
Sbjct: 418 RWQDFCRQRLSSPEWGAPTTLQDFTSALNECSLSAT--PEQLEVLRQWQDHALQL 470


>gi|237798642|ref|ZP_04587103.1| exonuclease I [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021495|gb|EGI01552.1| exonuclease I [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 476

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 192/475 (40%), Positives = 278/475 (58%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D +  +I      +C+P DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPGDDILPHPAACVI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+PKL++YL+  R K +++  + +  + PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRTKQKVQDQVRL--LQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L + L+T HD L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLQYDAETLKQHLYTRHDALEEGQLPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D          L   +   +D+ + +Y K    +S+D + 
Sbjct: 298 CPVVAPLGVLRSEDQQRLQLDLTAYQARAAQLNDSREVWQDKLQVLYGKDDFVASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDGWPFDDARLPELLFRYRARNFPDTLSTEEQQ 417

Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            WL   ++ L          ++++   L  +         +  ++    +Y+Q +
Sbjct: 418 RWLAFCQQRLRSPESGAPNTLQDFTKAL--IDVSLNATPAQLEVLRQWQDYVQQL 470


>gi|330877835|gb|EGH11984.1| exonuclease I [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 476

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 189/475 (39%), Positives = 279/475 (58%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D +  +I      +C+P+DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   + P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  P+GI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+P+L++YL+  R K ++++ I +  M PLVH+SG F A+RS   ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHL--MKPLVHISGRFSAARSYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L +RL+T  D LK G +PVP+K +H+N+
Sbjct: 238 VPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D          L +     +D+ + +Y K    +S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSENREVWQDKLQVLYGKDDFVASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLP+L FRYRARNFP TLS +E+ 
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSAEEQH 417

Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W +  ++ L+         ++++ + L   S        +  ++    ++   +
Sbjct: 418 RWQDFCRQRLSSPEWGAPTTLQDFTSALTECSLSAT--PEQLEVLRQWQDHALQL 470


>gi|213970280|ref|ZP_03398410.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato T1]
 gi|301382938|ref|ZP_07231356.1| exonuclease I [Pseudomonas syringae pv. tomato Max13]
 gi|302063791|ref|ZP_07255332.1| exonuclease I [Pseudomonas syringae pv. tomato K40]
 gi|302133521|ref|ZP_07259511.1| exonuclease I [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924952|gb|EEB58517.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato T1]
 gi|331018014|gb|EGH98070.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 476

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 190/475 (40%), Positives = 278/475 (58%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D +  +I      +C+P+DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   + P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  P+GI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+P+L++YL+  R K ++++ I +  M PLVH+SG F A+RS   ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHL--MKPLVHISGRFSAARSYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L +RL+T  D LK G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D          L +     +D+ + +Y K    +S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSESLEVWQDKLQVLYGKDDFVASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLP+L FRYRARNFP TLS  E+ 
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSADEQH 417

Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W +  +K L+         ++++ + L   S        +  ++    ++   +
Sbjct: 418 RWQDFCRKRLSSPEWGAPTTLQDFTSALNECSLSAT--PEQLEVLRQWQDHALQL 470


>gi|326316823|ref|YP_004234495.1| exodeoxyribonuclease I [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373659|gb|ADX45928.1| Exodeoxyribonuclease I [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 478

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 186/479 (38%), Positives = 272/479 (56%), Gaps = 14/479 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F  +DYETFG D   DRPAQFAG+R D    +I    + +C+PA DYLPDPE+  +T
Sbjct: 1   MHTFFWHDYETFGADPRRDRPAQFAGIRTDADLNEIGEPVMMYCRPAPDYLPDPESCLLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ  L  G+ E EF+ RI    + P T  +GYN IRFDD  +R +F+RN  D Y   
Sbjct: 61  GITPQLCLERGLPEHEFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYARE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  YA  PDGI+WP ++DG+ S KL+ L+ ANG+ H  AHDA +DV
Sbjct: 121 WQNECGRWDLLDVVRLTYALRPDGIEWPRKEDGSPSLKLEHLSRANGLVHEAAHDALSDV 180

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI----DIQNMTPLVHVSGMFGASRSNT 237
            AT+AL  LIR+++PKLFE+    R K+++   +          P +H SGMF A R   
Sbjct: 181 RATIALARLIRQRQPKLFEFALGLRRKDRVAAELRLPATADTARPFLHASGMFPADRGCL 240

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296
            ++ P+A HP  ++ +I  +L+ D      LD+ ++ +RLFT   +L +G+  +P+K VH
Sbjct: 241 GILWPLASHPTNRNELIAWDLAHDPSELAGLDAARIRERLFTRTADLPEGVARLPVKSVH 300

Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           LNK P+++  ++       +RWGID +R   +  + R   ++   +  ++      +  D
Sbjct: 301 LNKSPMVVGNVNTLTPAMAQRWGIDMERAAAHAEIARALPDMSAIWAEVFA-RPKDAPAD 359

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           VD  LY GF  + DR+ + R+    P++L+     F D RL EL +R+RARNFP TL E 
Sbjct: 360 VDQDLYGGFVGNEDRRRLQRLRTLPPQELALARPGFDDERLEELAWRFRARNFPETLDEA 419

Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           +++ W   R   L          +    +L +L      DE  E ++ ALYEY + + P
Sbjct: 420 DRERWEALRVARLMEGEGGGLTFDALFARLDTLGE--TADERGEAILGALYEYAESIAP 476


>gi|294626343|ref|ZP_06704945.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665158|ref|ZP_06730459.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292599344|gb|EFF43479.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605071|gb|EFF48421.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 481

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 197/477 (41%), Positives = 281/477 (58%), Gaps = 10/477 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    FF +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRMIEEPISFFVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ ALR+GV EAE   RI +    P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TGITPQHALREGVTEAEAFSRIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +P+L++Y    R+K     L+D+  M P++H+S  + ASR   A +
Sbjct: 181 VYATIGMARKFQQHQPRLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPASRLCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD  V   L    +A RL+    +L +G   +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + +   FER G+DH   +     LR     L ++ + +Y   +   ++  D 
Sbjct: 301 SPALVAWQHLRAADFERLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAAAAVNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D++++ ++  +AP++L  L   F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ W  +R++ L          +E+Y  ++  L G +  D  K+ L++ L  +   +
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRGAHPEDATKQALLDQLAAWGSDL 477


>gi|145631376|ref|ZP_01787147.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
 gi|144983035|gb|EDJ90539.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
          Length = 473

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/473 (46%), Positives = 310/473 (65%), Gaps = 6/473 (1%)

Query: 1   MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M  +F   IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV
Sbjct: 1   MAKNFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y
Sbjct: 61  MVTGITPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+  LI+EK+PKLF+Y ++ R K ++ KL+D   MTPLVHVSGM G  R N  
Sbjct: 181 ADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCT 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296
            +AP+AWHP  ++++I C+L+GD+       + +L   L+T   EL+  G+  VP+K VH
Sbjct: 241 WVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVH 300

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQD 355
           +NKCPIL P      E  +R GID + CL+NL  LR   ++R++   I+N+    +S+ +
Sbjct: 301 INKCPILAPAKTLLPETADRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V+++LY+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+  
Sbjct: 361 VETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           E+  W ++R+  L +S +E +++ LQ L+ E+  +  K  L+  +YEY   ++
Sbjct: 421 EQIKWKKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472


>gi|260914022|ref|ZP_05920495.1| exodeoxyribonuclease I [Pasteurella dagmatis ATCC 43325]
 gi|260631655|gb|EEX49833.1| exodeoxyribonuclease I [Pasteurella dagmatis ATCC 43325]
          Length = 476

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 301/469 (64%), Gaps = 5/469 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    + +CK  +DYLP PEAV +TGI
Sbjct: 8   SFFIYDYESFGVNPASDRPAQFAGIRTDIDFNIIGEPVMLYCKQTNDYLPSPEAVLVTGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+ RI Q FS PNTC++G+NNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 68  TPQECNEKGISEPEFAERILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   ++G  SF+L+ L   NGIEH NAHDA ADVYA
Sbjct: 128 NGNSRWDLLDLVRACYALRPEGINWAHDENGMPSFRLEKLTQVNGIEHSNAHDAMADVYA 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF++ ++ R K ++  LID+ NMTPLVHVSGM G  R NTA + P+
Sbjct: 188 TIAMAKLIKEKQPKLFQFFFENRGKKEIENLIDVANMTPLVHVSGMLGNYRGNTAWVVPL 247

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCP 301
           AWHP  +++VI C+LS ++       + +L + L+T   EL  KG++PVP+K VH+NKCP
Sbjct: 248 AWHPINQNAVIVCDLSANLDDLLTKSAAELRQNLYTPKAELLEKGILPVPLKLVHINKCP 307

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQ 359
           IL P      E+  R GID + CL+NL  L+   N+RD    I+         S +V+++
Sbjct: 308 ILAPAKVLLPENALRLGIDREFCLQNLQRLKNSANIRDIVTDIFTNEDKVFEPSLNVETE 367

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GFF   D+  M  +     ++L+   L F D+R+PEL F YRAR+   TL+  E+  
Sbjct: 368 LYSGFFDFSDKNNMAILRNLPVDKLAEHGLAFKDKRIPELLFHYRARHHFSTLTRAEQIK 427

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           W ++R K L +S +E ++  LQ L  E   +  K  L+  +YEY   ++
Sbjct: 428 WQKYRHKKLEQSAVE-FEQNLQRLIEENHNNPEKLELLKKVYEYGAKLL 475


>gi|30248680|ref|NP_840750.1| exonuclease I [Nitrosomonas europaea ATCC 19718]
 gi|30180275|emb|CAD84582.1| exodeoxyribonuclease I [Nitrosomonas europaea ATCC 19718]
          Length = 496

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 184/474 (38%), Positives = 264/474 (55%), Gaps = 8/474 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               +DYET G     DRP QFAG+R D    +I    V +C+PA D LP PEA  +TGI
Sbjct: 7   TLYWHDYETSGATPRWDRPFQFAGLRTDEALNEIGDPLVIYCQPARDRLPHPEACLLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ A   G+ E EF   IH   + P TC +GYN +RFDD  +R   YRNFYD Y   W 
Sbjct: 67  TPQMAEARGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFTLYRNFYDPYAREWQ 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +GNSRWD++D+ R  +A  P+GI WP   +G  SF+L+D+  ANG+ H +AHDA +DV A
Sbjct: 127 SGNSRWDVIDLARMTFALRPEGINWPINGEGKPSFRLEDITTANGLVHDSAHDALSDVRA 186

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  L+R ++P+L+++L+  R+K     L+D++   P++H S M+ +    T L+ P+
Sbjct: 187 TIALARLLRAQQPRLYDWLFRLRDKRAAGNLLDMKTHAPVLHTSRMYSSEYGCTTLVMPL 246

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
                  +SV+  +L  D   F  LD   LA+RLFT  +EL +GL  +P+K V LNKCP 
Sbjct: 247 LPETGNANSVLVYDLRHDPAEFVLLDIDALAERLFTPKEELAEGLQRLPVKAVRLNKCPA 306

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L P      E   R G++ ++C ++  LL Q  +   R K  Y+     +  D D  LYD
Sbjct: 307 LAPQKVLNDEVANRIGLNVEQCQQHWQLLLQHPDFMQRIKQAYSGNKVFAENDADLALYD 366

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
           GF +D DR +   +    P +L+ L   F D R  EL FRYRARNFP TLS +E+  W  
Sbjct: 367 GFASDHDRNLFPLVRDAEPGKLADLAGKFQDERYIELLFRYRARNFPDTLSVQEEHHWQM 426

Query: 423 HRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
           H ++ L  +       + EY  KL  L  +    + +  ++N L  + + +  +
Sbjct: 427 HCRRQLGENAINGSLTLNEYHQKLLQLRTDCPQ-QAQLDILNELEAWGRVLAQE 479


>gi|145639026|ref|ZP_01794634.1| exodeoxyribonuclease I [Haemophilus influenzae PittII]
 gi|145271998|gb|EDK11907.1| exodeoxyribonuclease I [Haemophilus influenzae PittII]
 gi|309750985|gb|ADO80969.1| Exodeoxyribonuclease I [Haemophilus influenzae R2866]
          Length = 473

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 4/468 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF+Y ++ R K ++ KL+D  +MTPLVHVSGM G  R N   +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGSMTPLVHVSGMLGNYRGNCTWVAPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           AWHP  ++++I C+L+GD+       + +L   L+T   EL+  G+  VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLTKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
           IL P      E   R GID + CL+NL  LR   ++R++   I+N+    +S+ +V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+  E+  W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            ++R+  L +S +E +++ LQ L+ E+  +  K  L+  +YEY   ++
Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472


>gi|315634266|ref|ZP_07889553.1| exodeoxyribonuclease I [Aggregatibacter segnis ATCC 33393]
 gi|315476856|gb|EFU67601.1| exodeoxyribonuclease I [Aggregatibacter segnis ATCC 33393]
          Length = 475

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 217/474 (45%), Positives = 306/474 (64%), Gaps = 7/474 (1%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M  +   F IYDYE+FG + A DRPAQF G+R D  +  I    V +CK  +DYLP PEA
Sbjct: 2   MAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDADFNIIGEPVVLYCKQTNDYLPAPEA 61

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V +TGITPQ+    G+ E +F+ RI Q FS PNTC++G+NNIR+DD  +R  FYRNF D 
Sbjct: 62  VLVTGITPQECNEKGLPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDP 121

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           Y +SW NGNSRWDLLD++RA YA  P+GI+WP  DDG  SF L+ L  ANGIEH NAHDA
Sbjct: 122 YEYSWKNGNSRWDLLDLVRACYALRPNGIEWPLDDDGMPSFHLEKLTKANGIEHTNAHDA 181

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
            +DVYAT+ +  LI++K+PKLF+Y ++ R K ++ KLI+   MTPLVHVSGM G  R NT
Sbjct: 182 MSDVYATIEMAKLIKQKQPKLFQYFFENRGKKEIEKLINTAEMTPLVHVSGMLGNYRGNT 241

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEV 295
            LIAP+AWHP  K++VI C+L+ ++       + +L + L+T  + L   G++PVP+K +
Sbjct: 242 TLIAPLAWHPTNKNAVIVCDLTANIDDLLTKSAEELRENLYTKKETLLEAGVLPVPLKLI 301

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQ 354
           H+NKC IL P      ++ ER GI+   C +N   L    ++R +   I+ +     +S 
Sbjct: 302 HINKCSILAPEKTLLPQNAERLGINRALCEKNQQRLLASKDVRQKVMDIFQQDREFEASD 361

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
           +V+++LY+GFF+D D+  M  +    PE+L+  NL F D R+P+L F YRAR+F  TL+ 
Sbjct: 362 NVETELYNGFFSDADKNNMAILRTLEPEKLAEHNLSFQDPRIPQLLFHYRARHFYRTLNR 421

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            E+  W ++R+K L    +  ++  LQ L+ + + DE K  L+  +YEY   +I
Sbjct: 422 AEQIKWQKYRRKKLEAEVL-RFEQSLQELATQNENDEEKLTLLQKVYEYGNKII 474


>gi|84623964|ref|YP_451336.1| exonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|161898991|ref|YP_201069.2| exonuclease I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367904|dbj|BAE69062.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 481

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 196/473 (41%), Positives = 279/473 (58%), Gaps = 10/473 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R AQFA VR D Q   IE    FF +PADD LP P A  +
Sbjct: 1   MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T ITPQ ALR+GV EAE   RI +  S P TC +GYN+IRFDD + R   +RNFYD Y  
Sbjct: 61  TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+R ++A  PDGI WP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ +    ++ +PKL++Y    R+K     L+D+  M P++H+S  + ASR   A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HPR    VI  +L GD  V   L   ++A RL+    +L +G   +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDV 356
            P L+   + +   FER G+D    L     +R+    L ++ + +Y   +   +++ D 
Sbjct: 301 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D+ LYDGF A+ D++++ ++  +AP +L  L   F D RL EL FRYRARN+P TLS  E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 420

Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
           ++ W  +R++ L          +E+Y  ++  L   +  D  K+ L++ L  +
Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAW 473


>gi|260582707|ref|ZP_05850495.1| exodeoxyribonuclease I [Haemophilus influenzae NT127]
 gi|260094273|gb|EEW78173.1| exodeoxyribonuclease I [Haemophilus influenzae NT127]
          Length = 473

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 223/468 (47%), Positives = 309/468 (66%), Gaps = 4/468 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF+Y ++ R K ++ KLID   MTPLVHVSGM G  R N   +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLIDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           AWHP  ++++I C+L+GD+       + +L   L+T   EL+  G+  VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKLELEERGVSSVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
           IL P      E   R GID + CL+NL  LR   ++R++   I+N+    +S+ +V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF++ D+  M  +     E+LS  +L F DRR+PEL F YRAR+F  TL+  E+  W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHSLAFEDRRIPELLFHYRARHFYKTLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            ++R+  L +S +E +++ LQ L+ E+  +  K  L+  +YEY   ++
Sbjct: 426 QKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472


>gi|254491492|ref|ZP_05104671.1| Exonuclease C-terminal domain family [Methylophaga thiooxidans
           DMS010]
 gi|224462970|gb|EEF79240.1| Exonuclease C-terminal domain family [Methylophaga thiooxydans
           DMS010]
          Length = 479

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 189/474 (39%), Positives = 284/474 (59%), Gaps = 9/474 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 +DYET G D   DRP QFAGVR D     I    + +CKP+ DYLP P+A  +T
Sbjct: 1   MTTLYWHDYETSGIDPRFDRPMQFAGVRTDEDLNIIGEPLMIYCKPSGDYLPHPQAALVT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+TPQ A ++G+ EAEF ++IH   + P TC +GYN++RFDD ++R   +RNFYD+Y   
Sbjct: 61  GLTPQLAEKEGLNEAEFIKQIHDELAAPGTCGVGYNSLRFDDEFTRFTLFRNFYDAYARE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +GNSRWD++D++R   A  P+GI WP+R+DG  SF+L+DL  ANGIEH  AHDA ADV
Sbjct: 121 WQSGNSRWDIIDMVRLTRALRPEGIHWPNREDGKPSFRLEDLTAANGIEHSGAHDALADV 180

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ +  LI+  +PKL++Y+++ R K  L  L+++    P+VHVS M+      TAL+ 
Sbjct: 181 YATIEMARLIKNAQPKLYDYVFERRRKQTLAPLLNLNERKPVVHVSRMYPGEYCGTALVV 240

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+A  P   + +I  +L  D +   +LD+  L +RLFT   +L +G     +K +H+NKC
Sbjct: 241 PLAKDPNNNNGIIVYDLRHDPKDLIELDAETLRERLFTPTADLPEGATRPALKTLHINKC 300

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P+++P +       ER  ID     ++L +L     L ++  AI+  P      D D+ L
Sbjct: 301 PVVVPENTLDDAAAERLQIDRTAHYQHLDMLNTAQGLTEKLNAIFTAPTYDEIDDPDASL 360

Query: 361 Y-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+D D++ MD I    P  L TL++PF D RLPEL FRYRARN+P +L+++E++ 
Sbjct: 361 YGGGFFSDNDKRKMDVIRNADPAMLPTLSVPFEDPRLPELLFRYRARNWPESLNQEEQEQ 420

Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W+ +R+  L          +E ++  L     +   +E ++ ++  L +Y Q +
Sbjct: 421 WVLYRQHRLGNQAADKVLNVERFETALAESRQQ-DLNEEQKAVLEQLEQYAQRL 473


>gi|224826521|ref|ZP_03699622.1| Exodeoxyribonuclease I [Lutiella nitroferrum 2002]
 gi|224601122|gb|EEG07304.1| Exodeoxyribonuclease I [Lutiella nitroferrum 2002]
          Length = 475

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 186/477 (38%), Positives = 271/477 (56%), Gaps = 11/477 (2%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   F  +DYETFG     DRPAQFAG+R D +  +I    + +C+P+ DYLP PEA  
Sbjct: 1   MSQHTFFWHDYETFGTVPRQDRPAQFAGIRTDAELNEIGEPVMLYCRPSPDYLPSPEACL 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGITPQ   + GV E EF+  I +  + P T  +GYN++RFDD  +R +F+RN  D Y 
Sbjct: 61  LTGITPQLCQQHGVAEHEFAGVIERELATPGTIGVGYNSLRFDDEVTRFLFWRNLIDPYA 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             W N   RWDLLD++RA YA  P+GI+WP  D G  SFKL+ L+ ANG+ H  AHDA +
Sbjct: 121 REWQNQCGRWDLLDLVRATYALRPEGIEWPKHDTGLPSFKLEHLSAANGLAHEAAHDALS 180

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DV AT+AL  LIR+++PKLFE+    R K+ +R  + +    PL+HVSGM+GA R N A+
Sbjct: 181 DVRATIALARLIRQRQPKLFEFYLGLRKKDAVRHQLSLHAPRPLLHVSGMYGAERGNLAV 240

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
           + P+A HP  K+ VI  +L+ D    + L    + +RLF+  DEL  G+  +PIK +H+N
Sbjct: 241 VWPLAEHPSNKNEVIVWDLAYDPAELRGLGPDTIRQRLFSRSDELPDGVSRLPIKTIHIN 300

Query: 299 KCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           K P ++  +     E  + WGID      +    +   NL   ++ +Y    T +  DVD
Sbjct: 301 KSPFVVSNLRVLSDERADHWGIDLDAVTRHAETAQALPNLTSVWRKVYQ-RETGAPADVD 359

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
             LY GF ++ DR+ + R+   +  QL+     F D +L E  FRYRARNFP +LS  E+
Sbjct: 360 ENLYGGFVSNNDRRELTRLRTLSAVQLAGERPAFDDAQLSEQLFRYRARNFPASLSAAEQ 419

Query: 418 QDWLEHRKKMLTRSRIE-----EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           + W    +  L    I      +   ++ +L  E   D   + L+ A+ +++    P
Sbjct: 420 ERWQSWCRSKLIDGAIPGRHRAQCLEEIATL--EATADARGQTLLAAIRQFVDETAP 474


>gi|329120482|ref|ZP_08249147.1| exodeoxyribonuclease I [Neisseria bacilliformis ATCC BAA-1200]
 gi|327461940|gb|EGF08270.1| exodeoxyribonuclease I [Neisseria bacilliformis ATCC BAA-1200]
          Length = 521

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 220/470 (46%), Positives = 315/470 (67%), Gaps = 4/470 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F IYDYETFG   A DRPAQFAG+R D  +  +      +CK  +DYLP PE+V IT
Sbjct: 52  QPTFFIYDYETFGIHPARDRPAQFAGIRTDPDFNPVADPITLYCKQTNDYLPSPESVLIT 111

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITPQ+  + GV E EF+ RI   FS PNTCI+GYNNIR+DD  +R+ FYRNF D Y +S
Sbjct: 112 SITPQECNQKGVPEPEFAARICAEFSQPNTCIMGYNNIRYDDEITRHTFYRNFLDPYEYS 171

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + NGNSRWDLLDV+RA +A  P+GI+WP  ++G   F+L+ L  ANGIEH +AHDA +DV
Sbjct: 172 YQNGNSRWDLLDVVRACHALRPEGIEWPRDENGLPVFRLEQLTAANGIEHAHAHDALSDV 231

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+AL  LI++K+P+LF + ++ R K  L  +IDI+  TPLVH+SGMFG +R NTALIA
Sbjct: 232 YATIALAKLIKQKQPRLFRFFFENRGKAPLAAMIDIRRHTPLVHISGMFGNARRNTALIA 291

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNK 299
           P++WHP  K++VI C+LS D+R   +L++  L +RL+T  + L  +G +PVP+K VH+NK
Sbjct: 292 PLSWHPSNKNAVIACDLSADLRDLLNLNADTLRERLYTPKETLLAQGALPVPLKLVHINK 351

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDS 358
           CPIL P +  + E  ER GID+  C  NL  L+    +R + + I+ +    + S +V++
Sbjct: 352 CPILTPRNVLRDEDAERLGIDNTICQNNLAALQNAPEIRQKVQQIFRETRQFAPSDNVET 411

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           +LY+GFF+  D+Q +  +    PEQL+   LPF D R+P+L F YRAR+F  TL+  E+ 
Sbjct: 412 ELYNGFFSPADKQNLATLRTLPPEQLANHGLPFQDPRIPQLLFHYRARHFYPTLTRAEQI 471

Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            W ++R+K L  + + ++   LQ+L+ +   +  K  L+ A+Y+Y + ++
Sbjct: 472 QWQKYRRKKL-EAALPDFSQSLQNLAEQNADNPDKLLLLQAVYQYAERLL 520


>gi|145632876|ref|ZP_01788609.1| exodeoxyribonuclease I [Haemophilus influenzae 3655]
 gi|145634313|ref|ZP_01790023.1| exodeoxyribonuclease I [Haemophilus influenzae PittAA]
 gi|229844163|ref|ZP_04464304.1| exonuclease I [Haemophilus influenzae 6P18H1]
 gi|319776340|ref|YP_004138828.1| exonuclease I [Haemophilus influenzae F3047]
 gi|329123492|ref|ZP_08252056.1| exodeoxyribonuclease I [Haemophilus aegyptius ATCC 11116]
 gi|144986532|gb|EDJ93098.1| exodeoxyribonuclease I [Haemophilus influenzae 3655]
 gi|145268293|gb|EDK08287.1| exodeoxyribonuclease I [Haemophilus influenzae PittAA]
 gi|229813157|gb|EEP48845.1| exonuclease I [Haemophilus influenzae 6P18H1]
 gi|317450931|emb|CBY87157.1| exonuclease I [Haemophilus influenzae F3047]
 gi|327471074|gb|EGF16529.1| exodeoxyribonuclease I [Haemophilus aegyptius ATCC 11116]
          Length = 473

 Score =  368 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 219/468 (46%), Positives = 307/468 (65%), Gaps = 4/468 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF+Y ++ R K ++ KL+D   MTPLVHVSGM G  R N   +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           AWHP  ++++I C+L+GD+       + +L   L+T   +L+  G+  VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSKLEERGVSSVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
           IL P      E   R GID + CL+NL  LR   ++R++   I+N+    +S+ +V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+  E+  W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            ++R+  L +S +E +++ LQ L+ E+  +  K  L+  +YEY   ++
Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472


>gi|301170130|emb|CBW29734.1| exonuclease I [Haemophilus influenzae 10810]
          Length = 473

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 219/468 (46%), Positives = 306/468 (65%), Gaps = 4/468 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA  DVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMEDVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF+Y ++ R K ++ KL+D   MTPLVHVSGM G  R N   +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           AWHP  ++++I C+L+GD+       + +L   L+T   EL+  G+  VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLTKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
           IL P      E   R GID + CL+NL  LR   ++R++   I+N+    +S+ +V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+  E+  W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            ++R+  L +S +E +++ LQ L+ E+  +  K  L+  +YEY   ++
Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472


>gi|229846770|ref|ZP_04466877.1| exonuclease I [Haemophilus influenzae 7P49H1]
 gi|229810259|gb|EEP45978.1| exonuclease I [Haemophilus influenzae 7P49H1]
          Length = 473

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 219/468 (46%), Positives = 307/468 (65%), Gaps = 4/468 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF+Y ++ R K ++ KL+D   MTPLVHVSGM G  R N   +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           AWHP  ++++I C+L+GD+       + +L   L+T   +L+  G+  VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSKLEERGVSSVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
           IL P      E   R GID + CL+NL  LR   ++R++   I+N+    +S+ +V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+  E+  W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            ++R+  L +S +E +++ LQ L+ E+  +  K  L+  +YEY   ++
Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472


>gi|319897029|ref|YP_004135224.1| exonuclease i [Haemophilus influenzae F3031]
 gi|317432533|emb|CBY80893.1| exonuclease I [Haemophilus influenzae F3031]
          Length = 473

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 220/473 (46%), Positives = 309/473 (65%), Gaps = 6/473 (1%)

Query: 1   MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M  +F   IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV
Sbjct: 1   MAKNFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAV 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y
Sbjct: 61  MVTGITPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPY 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLD++RA YA  P+GI W   D G  SF+L+ L  ANGIEH NAHDA 
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDAGMPSFRLEKLTKANGIEHENAHDAM 180

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+  LI+EK+PKLF+Y ++ R K ++ KL+D   MTPLVHVSGM G  R N  
Sbjct: 181 ADVYATIAMGKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCT 240

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296
            +AP+AWHP  ++++I C+L+GD+       + +L   L+T   EL+  G+  VP+K VH
Sbjct: 241 WVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVH 300

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQD 355
           +NKCPIL P      E  +R GID + CL+NL  LR   ++R++   I+N+    +S+ +
Sbjct: 301 INKCPILAPAKTLLPETADRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDN 360

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           V+++LY+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+  
Sbjct: 361 VETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRA 420

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           E+  W ++R+  L +S +E +++ LQ L+ E+  +  K  L+  +YEY   ++
Sbjct: 421 EQIKWKKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472


>gi|330950132|gb|EGH50392.1| exonuclease I [Pseudomonas syringae Cit 7]
          Length = 476

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 191/475 (40%), Positives = 275/475 (57%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D    +I +     C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRSDRALQMAGIRTDTDLNEIAAPVNLHCQLSDDILPHPAACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+PKL++Y +  R+K ++++ + +  M PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIREKQPKLYDYFFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L +RL+T HD L  G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D        T L +      D+  A+Y K   ++S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSEHREVWHDKLAAVYGKDDFAASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLPEL FRYRARNFP TLS +E+ 
Sbjct: 358 QLYDGFMGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417

Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W +  ++ L          + ++   L  +         +  ++    +Y   +
Sbjct: 418 RWRDFCQQRLRSPEWGAPNTLHDFTAAL--IKCSLSAAPEQLEVLRQWQDYANEL 470


>gi|170717586|ref|YP_001784670.1| exonuclease I [Haemophilus somnus 2336]
 gi|168825715|gb|ACA31086.1| Exodeoxyribonuclease I [Haemophilus somnus 2336]
          Length = 476

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 221/470 (47%), Positives = 312/470 (66%), Gaps = 4/470 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D+ +  I    +F+CK  DDYLP PE+V +TGI
Sbjct: 6   SFFIYDYESFGINPATDRPAQFAGIRTDQDFNIIGEPVMFYCKQTDDYLPSPESVLVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ     G+ E EF+ +I   FS PNTCI+GYNN+R+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQICNEKGIPEPEFAEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDL+DV+RA YA  PDGI W   DDG  SF+L+ L   NGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSFRLEKLTQVNGIEHGNAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI++K+PKLF++ ++ R K ++ KLIDI NM PLVHVSGM G  R NT+ + P+
Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTSWVVPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           AWHP  +++VI C+L+ D+       +V+L + L+T   EL+   ++PVP+K VH+NKCP
Sbjct: 246 AWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA-IYNKPYTSSSQDVDSQL 360
           IL P      E+  + GID + CL+NL  LRQ  ++RD+     +++     S +V+++L
Sbjct: 306 ILAPAKTLLPENATKLGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+ FF++ D+  M  + + +PE+L+  NL FSD+R+P+L F YRAR+F  TL   E+  W
Sbjct: 366 YNQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKRIPDLLFHYRARHFYKTLDRSEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
            ++R++ L      +++  LQ L  EY+ +  K  L+  +YEY   ++ K
Sbjct: 426 QKYRQRKL-EKSAVQFEESLQRLVEEYQNNPEKLLLLQQVYEYGATLLRK 474


>gi|68250106|ref|YP_249218.1| exonuclease I [Haemophilus influenzae 86-028NP]
 gi|148825915|ref|YP_001290668.1| exonuclease I [Haemophilus influenzae PittEE]
 gi|68058305|gb|AAX88558.1| exodeoxyribonuclease I [Haemophilus influenzae 86-028NP]
 gi|148716075|gb|ABQ98285.1| exodeoxyribonuclease I [Haemophilus influenzae PittEE]
          Length = 473

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 219/468 (46%), Positives = 307/468 (65%), Gaps = 4/468 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF+Y ++ R K ++ KL+D   MTPLVHVSGM G  R N   +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           +WHP  ++++I C+L+GD+       + +L   L+T   EL+  G+  VP+K VH+NKCP
Sbjct: 246 SWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
           IL P      E   R GID + CL+NL  LR   ++R++   I+N+    +S+ +V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+  E+  W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            ++R+  L +S +E +++ LQ L+ E+  +  K  L+  +YEY   ++
Sbjct: 426 QKYRQNKLEKSAVE-FQSGLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472


>gi|309973062|gb|ADO96263.1| Exodeoxyribonuclease I [Haemophilus influenzae R2846]
          Length = 473

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 4/468 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF+Y ++ R K ++ KL+DI  MTPLVHVSGM G  R N   +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDIGAMTPLVHVSGMLGNYRGNCTWVAPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           +WHP  ++++I C+L+GD+       + +L   L+T   EL+  G+  VP+K VH+NKCP
Sbjct: 246 SWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
           IL P      E   R GID + CL+NL  LR   ++R++   I+N+    +S+ +V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+  E+  W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            ++R+  L +S +E +++ LQ L+ E+  +  K  L+  +YEY   ++
Sbjct: 426 QKYRQNKLEKSAVE-FQSGLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472


>gi|192360953|ref|YP_001983097.1| exonuclease I [Cellvibrio japonicus Ueda107]
 gi|190687118|gb|ACE84796.1| exodeoxyribonuclease I [Cellvibrio japonicus Ueda107]
          Length = 497

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 187/482 (38%), Positives = 270/482 (56%), Gaps = 18/482 (3%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               +DYET+G   A+DRP QFAGVR D     +      + +PA D LP PEA  ITGI
Sbjct: 8   TLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEACLITGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+A   GV EA+F   IH+  + P TC +GYN+IRFDD  +R   YRNFYD Y   W 
Sbjct: 68  TPQEAEAKGVSEADFIAAIHRELARPGTCGVGYNSIRFDDEVTRYTLYRNFYDPYEREWR 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDL+DV+R   A  P+GI WP  +DG   FKL+ L   N I H  AHDA +DV+A
Sbjct: 128 NGNSRWDLIDVLRMTRALRPEGIHWPDYEDGTPCFKLERLTEVNRISHEAAHDALSDVHA 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  L++ ++PKL++Y +  R+K     LIDI    PL+H+S  F   + N AL+ P+
Sbjct: 188 TIAMARLLKSRQPKLYDYAFRLRDKRFAASLIDIDGQKPLLHISSRFPGQQGNAALVLPL 247

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           A+HP  K+SVI  NL+ D     +L   +L  RLFT+  +L +G+  +P+KE+HLNK P+
Sbjct: 248 AYHPANKNSVIAFNLAFDPSPLLNLPVDELRIRLFTASADLPEGVERLPLKEIHLNKTPM 307

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-----RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           L+      +    R  +D   C ++L         ++  L ++   +Y+    +   D +
Sbjct: 308 LVTTAMVDETLARRLQLDMAICEQHLRAWTQLTRTEREALAEKLDELYSAQDFTGRTDPE 367

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
            QLY GFF+D D+++M R+   +P+ L+     F D RLPEL FRYRARNFP +L   E+
Sbjct: 368 QQLYAGFFSDADKRLMSRVRTLSPDALAKTEWTFEDSRLPELLFRYRARNFPESLDPAEQ 427

Query: 418 QDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDE------GKEGLINALYEYLQ 465
           Q W +     LTR        + +++ ++ +L               K  ++  L +Y  
Sbjct: 428 QRWFDFCCGRLTRPDQGASLVLSDFRQRIHALLAGLDVQPPQPDPIKKRQILKQLQDYAD 487

Query: 466 WV 467
            +
Sbjct: 488 SL 489


>gi|329895211|ref|ZP_08270875.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC3088]
 gi|328922449|gb|EGG29791.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC3088]
          Length = 480

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 195/478 (40%), Positives = 268/478 (56%), Gaps = 11/478 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M++ F  +DYETFG   A DRP QFAG+R D     I    V + +P  DYLP+P AV +
Sbjct: 1   MSDTFYWHDYETFGASPAKDRPCQFAGLRTDANLNVIGDPLVVYSRPTPDYLPNPMAVLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+AL+ G+ E EF  RIH   S P TC +GYN++RFDD  +R   YRNF+D Y  
Sbjct: 61  TGITPQEALQKGLSEREFITRIHAELSQPLTCGVGYNSLRFDDEVTRYTLYRNFFDPYGR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            + +GNSRWDL+D++RA YA  P+GI+WP  DDG  S KL+ L  ANGIEH  AHDA  D
Sbjct: 121 EYQDGNSRWDLIDLVRASYALRPEGIEWPMSDDGFMSAKLERLTAANGIEHAGAHDALVD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+ L  LI+ K+PKLFEY    R K   +  + +    P++HVSGMFGA  +N  L+
Sbjct: 181 VKATIELAKLIKTKQPKLFEYYLGLRFKRAAQDQLALGQWRPILHVSGMFGARHANIGLV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
            P   HP  K+ +I  +LS       D  + +L +RL+T  D+L G  P  +K +H+N+ 
Sbjct: 241 VPAIQHPTNKNEIITIDLSQSPEKLLDYSADELRQRLYTPADQLDGERP-ALKSIHINRA 299

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLR-----DRFKAIYNKPYTSSSQD 355
           P + P      E   R  +D     EN+  L+     R        + +Y     +   D
Sbjct: 300 PFVAPAKMMTDEVAARANLDLVALRENMKALQALMKERGNELLALLRDVYAHKRVAEPTD 359

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
            +  LY GF +D DR++ D+I   +P+ L+  + PF DRRL EL FRYRARNFP TLS  
Sbjct: 360 PEWDLYGGFLSDGDRRLCDQIKSASPQILARSSFPFEDRRLGELLFRYRARNFPDTLSLD 419

Query: 416 EKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           EK  W E+  + +TR       +E    ++  +      D     L++AL  Y   ++
Sbjct: 420 EKMQWQEYCFERITREDQGLMHMERLFEEIAVIRQVSDDDPRAMQLMDALESYSDTLL 477


>gi|148826847|ref|YP_001291600.1| exonuclease I [Haemophilus influenzae PittGG]
 gi|148718089|gb|ABQ99216.1| exodeoxyribonuclease I [Haemophilus influenzae PittGG]
          Length = 473

 Score =  366 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 220/468 (47%), Positives = 307/468 (65%), Gaps = 4/468 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EFS  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQECNEKGLSEPEFSANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF+Y ++ R K ++ KL+D   MTPLVHVSGM G  R N   +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGTMTPLVHVSGMLGNYRGNCTWVAPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           +WHP  ++++I C+L+GD+       + +L   L+T   EL+  G+  VP+K VH+NKCP
Sbjct: 246 SWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
           IL P      E   R GID + CL+NL  LR   ++R++   I+N+    +S+ +V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+  E+  W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            ++R+  L +S +E +++ LQ L+ E+  +  K  L+  +YEY   ++
Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 472


>gi|332288227|ref|YP_004419079.1| exonuclease I [Gallibacterium anatis UMN179]
 gi|330431123|gb|AEC16182.1| exonuclease I [Gallibacterium anatis UMN179]
          Length = 471

 Score =  366 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 218/466 (46%), Positives = 299/466 (64%), Gaps = 4/466 (0%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M +  F IYDYE+FG D A DRPAQFAG+R D+ +  I    V +CK  +DYLP P AV 
Sbjct: 1   MNDFSFFIYDYESFGVDPARDRPAQFAGIRTDKDFNIIGEPIVLYCKQTNDYLPHPAAVA 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGITPQ   + G+ E EF+ +I + FS PNTCI+GYNNIRFDD  +R  FYRNF D Y 
Sbjct: 61  LTGITPQLCNQQGISEPEFAAKILEEFSQPNTCIMGYNNIRFDDEMTRYTFYRNFIDPYA 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
           +S+  GNSRWDLLDV+RA YA  P+GI W   D+G  SF+L+ L  AN IEH +AHDA +
Sbjct: 121 YSYSQGNSRWDLLDVIRATYALRPEGINWVYDDEGMPSFRLELLTKANNIEHSHAHDAMS 180

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DVYAT+ +  LI++++PKLF+Y + +R+K ++ +LID  NMTPLVHVSGM G  RSN + 
Sbjct: 181 DVYATIEMAKLIKQQQPKLFDYFFTHRSKKEIEELIDYVNMTPLVHVSGMLGNYRSNISW 240

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHL 297
           + P+A HP  K++VI C+L+ D+     L   +L + L+T   EL+  G   VP+K VH 
Sbjct: 241 MVPLAPHPTNKNAVIFCDLAADIDDLLTLSVEELKQNLYTKKAELELQGKKSVPLKLVHC 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           NKCPIL P    + +  ER GID ++CL NL  L+    +R++   I+ + Y +   DV+
Sbjct: 301 NKCPILAPAKTLRPQDAERVGIDRQQCLTNLAKLQAMPEIREKVHQIFLEEYDNDYDDVE 360

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
           + LY  FF+  D+  +  +   +PEQL+   L F D+R+PEL FRYRAR+F  TLS  E+
Sbjct: 361 TALYKVFFSYSDKNNLAILRTLSPEQLANHGLTFQDKRIPELLFRYRARHFYKTLSRAEQ 420

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
             W ++    L  +   E+  + + LS +Y  DE K  L+  LYEY
Sbjct: 421 IKWQKYCHAKL-DASSAEFIAEFEMLSAQYANDENKLLLLQNLYEY 465


>gi|113461015|ref|YP_719082.1| exonuclease I [Haemophilus somnus 129PT]
 gi|112823058|gb|ABI25147.1| Exodeoxyribonuclease I subunit C [Haemophilus somnus 129PT]
          Length = 486

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 219/470 (46%), Positives = 311/470 (66%), Gaps = 4/470 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D+ +  I    +F+CK  DDYLP PE+V +TGI
Sbjct: 16  SFFIYDYESFGINPATDRPAQFAGIRTDQNFNIIGEPVMFYCKQTDDYLPSPESVLVTGI 75

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ     G+ E EF+ +I   FS PNTCI+GYNN+R+DD  +R  FYRNF D Y +SW 
Sbjct: 76  TPQICNEKGIPEPEFAEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWK 135

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDL+DV+RA YA  PDGI W   DDG  SF+L+ L   NGIEH NAHDA ADVYA
Sbjct: 136 NGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSFRLEKLTQVNGIEHGNAHDAMADVYA 195

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI++K+PKLF++ ++ R K ++ KLIDI NM PLVHVSGM G  R NT+ + P+
Sbjct: 196 TIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTSWVVPL 255

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           AWHP  +++VI C+L+ D+       +V+L + L+T   EL+   ++PVP+K VH+NKCP
Sbjct: 256 AWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCP 315

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA-IYNKPYTSSSQDVDSQL 360
           IL P      E+  + GID + CL+NL  LRQ  ++RD+     +++     S +V+++L
Sbjct: 316 ILAPAKTLLPENATKLGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETEL 375

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y  FF++ D+  M  + + +PE+L+  NL FSD+R+ +L F YRAR+F  TL   E+  W
Sbjct: 376 YKQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKRISDLLFHYRARHFYKTLDRSEQIKW 435

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
            ++R++ L    + +++  LQ L  EY+ +  +  L+  +YEY   ++ K
Sbjct: 436 QKYRQRKL-EKSVVQFEESLQRLVEEYQNNPEELLLLQQVYEYGATLLSK 484


>gi|194366373|ref|YP_002028983.1| exonuclease I [Stenotrophomonas maltophilia R551-3]
 gi|194349177|gb|ACF52300.1| Exodeoxyribonuclease I [Stenotrophomonas maltophilia R551-3]
          Length = 479

 Score =  365 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 190/475 (40%), Positives = 288/475 (60%), Gaps = 8/475 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R +Q+A +R D    +I++   FF +PADD LP P A  +
Sbjct: 1   MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+AL +G+ EAE   RI++  S P TC +GYN +RFDD + R   +RNF+D Y  
Sbjct: 61  TGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWDLLD++R + A  P+GIQWP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+ +  L ++ +P+L++Y    R+K  +  L+D+  M P++H+S  + ASR   A +
Sbjct: 181 VRATIGMARLFKQSQPRLWDYALKLRDKRFVGSLLDVAAMKPVLHISMRYPASRLCAAPV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P++ HP   + VI  +L GD+    +L +  +A+RL+    EL +G   VP+KEV LNK
Sbjct: 241 LPLSMHPTVNNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGATRVPLKEVQLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
            P L+  ++ + +   R G+D          LR     L ++ + +YN+P  ++  DVD+
Sbjct: 301 VPALIAWNHLRADDHARLGLDVAAIEAKAERLRAFAPQLAEKARQVYNQPRVANVADVDA 360

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
            LYDGF    D+ ++     TAPEQL+ L   F D RLPEL FRYRARN P +L+  E+Q
Sbjct: 361 SLYDGFLGAGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPDERQ 420

Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W ++R++       L    + +Y+ +L +L+ E   D  ++ L+ +L ++ Q +
Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDARRQDLLQSLRDWGQHL 475


>gi|254786919|ref|YP_003074348.1| exonuclease I [Teredinibacter turnerae T7901]
 gi|237686146|gb|ACR13410.1| exodeoxyribonuclease I [Teredinibacter turnerae T7901]
          Length = 478

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 191/469 (40%), Positives = 285/469 (60%), Gaps = 8/469 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G + A+DRP+QFAGVR D     I    V +C+P +D  P P+AV +T
Sbjct: 1   MRTFYWHDYETWGANPAVDRPSQFAGVRTDENLNIISDPLVIYCQPPEDIWPQPQAVMVT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+PQ A   G+ E EF  RIH+  + P TC +GYN++RFDD  +R   +RN++D Y   
Sbjct: 61  GISPQIARDKGLPEHEFIARIHREMAEPQTCTVGYNSLRFDDEVTRYALFRNYFDPYERE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD++D++R  YA  P+GI+WP   +G  SFKL++L  ANGI H  AHDA +DV
Sbjct: 121 WRNGNSRWDIIDMVRLTYALRPEGIEWP-LVEGRPSFKLENLTQANGIAHQAAHDAFSDV 179

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  LI+EK+P+L++Y+ DY  K +L +LID+Q+  PL+HVS  F A    +AL+A
Sbjct: 180 EATIALAKLIKEKQPQLYQYVRDYSGKRKLAELIDVQSRKPLLHVSSRFSAEHGCSALVA 239

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+A HP  K++VI  +LS D +   D  + ++ +RL+ + D+L +G+  +P+K VHLNKC
Sbjct: 240 PLAMHPVNKNAVIVFDLSVDPQPLIDASAEEVLQRLYVAADDLPEGVERIPLKLVHLNKC 299

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           PIL       +    R  ID     ++   L Q  +L+ +  A++++      QD + QL
Sbjct: 300 PILATPKLLDETAATRLKIDKSLSEQHWQKL-QCADLKSKLTAVFSQNDFPPRQDPEQQL 358

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GF  D D++   ++      Q+   N  F D RL  +  RY+ARNFP TLS++E  +W
Sbjct: 359 YNGFIGDADKRTSVQLRTATAAQIQQHNFVFEDARLSAMVLRYKARNFPETLSDEEAAEW 418

Query: 421 LEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
            EH +  L           E+++ + +L  E++G  GK  L++AL +Y 
Sbjct: 419 SEHVRLRLMDGGDGCLSYAEFQSTVANLRCEHEGSPGKLALLDALEDYA 467


>gi|260580789|ref|ZP_05848615.1| exonuclease I [Haemophilus influenzae RdAW]
 gi|260092606|gb|EEW76543.1| exonuclease I [Haemophilus influenzae RdAW]
          Length = 473

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 219/468 (46%), Positives = 304/468 (64%), Gaps = 4/468 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  AN IEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANSIEHENAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF+Y ++ R K ++ KL+D   MTPLVHVSGM G  R N   +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           AWHP  ++++I C+L+GD+       + +L   L+T   EL+  G+  VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
           IL P      E   R GID + CL+NL  LR   ++R++   I+N+    +S+ +V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+  E+  W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            ++R+  L +S +E ++  LQ L  E+  +  K  L+  +YEY   ++
Sbjct: 426 KKYRQNKLEKSAVE-FEASLQRLVEEHSDNSEKLSLLQQVYEYGIKLL 472


>gi|332306455|ref|YP_004434306.1| Exodeoxyribonuclease I [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173784|gb|AEE23038.1| Exodeoxyribonuclease I [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 476

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 203/474 (42%), Positives = 286/474 (60%), Gaps = 8/474 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T     +DYET+G +   D   QFAG+R D     I    + F +  +DYLP P+A  IT
Sbjct: 3   TPSIYWHDYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPHPQACLIT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ +LRDG++E EF  +IH  FS   TC+ GYNNIRFDD  +R   YRNFYD Y   
Sbjct: 63  GITPQHSLRDGMIEPEFIEKIHHEFSQAETCVAGYNNIRFDDEVTRYTLYRNFYDPYERE 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD++DV+RA YA  PDGI+WP ++DG+ SFKL+DL+ AN IEH  AHDA +DV
Sbjct: 123 WRNGNSRWDIIDVVRACYALRPDGIEWPLKEDGSPSFKLEDLSKANNIEHSAAHDAMSDV 182

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ +  L++  +PKL++YL++ R K  +  LID Q  TPLVH+S    A       +A
Sbjct: 183 YATIGVAKLVKTAQPKLYDYLFNLRLKKNVIALIDTQAHTPLVHISSKLPAINGCCTWVA 242

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+A HP  K++ I  NLS D++    L   ++ ++L+T+ + L +G   +PIK VH+NK 
Sbjct: 243 PIAQHPTNKNAFIMLNLSLDIQPLLALSVEEIIQKLYTASNMLEEGEQRLPIKLVHVNKS 302

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR-FKAIYNKPYTSSSQDVDSQ 359
           P+L P     +E+  R GID + CL+NL LL+Q   L ++  K  ++       +   S 
Sbjct: 303 PVLAPAKTLNEENAARLGIDRQACLQNLQLLKQHPELVEKLIKVHHSNTEHVPQEADHSL 362

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
              GFF+  DR +MD++ ++ PEQL+ L LPF D RL  L F Y+ARNFP +L+++E Q 
Sbjct: 363 YSGGFFSPKDRALMDQVRQSTPEQLADLALPFEDSRLDNLLFYYKARNFPTSLNDQEMQR 422

Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W  HRK  L          + +Y   L+ L  +Y  +  K  ++ ALY Y + +
Sbjct: 423 WQNHRKFRLLDDSSPSSITMSDYVQTLELLCEQYHSNSDKLAILKALYTYAEQL 476


>gi|330811421|ref|YP_004355883.1| exodeoxyribonuclease I [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379529|gb|AEA70879.1| Exodeoxyribonuclease I [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 477

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 182/477 (38%), Positives = 276/477 (57%), Gaps = 19/477 (3%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 YDYET G +   DRP Q AG+R D +  +I+     +C+P+DD LP P A  IT
Sbjct: 1   MTSIFWYDYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCRPSDDILPHPAACAIT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP      G+ EA+F  R+H   + P TC  GYN +RFDD  +R   YRNF+D Y   
Sbjct: 61  GITPTCLAEKGLSEADFMTRVHGQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDL+D++RA YA  P GI WP   DG  + KL+ L  ANGI+H  AHDA +DV
Sbjct: 121 WQGGNSRWDLIDLVRAAYALRPQGIVWPQE-DGRVTLKLERLTAANGIDHGQAHDALSDV 179

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  LIR+++P+L+++L+  R+K ++   I +  + P+VH+SG F A+R+   ++ 
Sbjct: 180 RATIALARLIRQQQPRLYDWLFQLRSKQKVMDQIRL--LQPMVHISGRFSAARNYIGVVL 237

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKC 300
           P+AWHP+ ++++I C+L  D +   D D+  L +RL+T  +E L+G +PVP+K +H+NKC
Sbjct: 238 PLAWHPKNRNALIVCDLHLDPQGLLDHDAESLRQRLYTRREELLEGELPVPLKLIHINKC 297

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           P++ P+   + E  +R  +D +   +    L   Q   +D+ +AIY +   ++S+D + Q
Sbjct: 298 PVIAPLSVLRAEDQQRLELDMEGYQQRALRLTDAQKVWQDKLQAIYGREDFTASEDPEQQ 357

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GF  D DR++ +++    P QL+    PF D RLPEL FRYRARNFP TL+ +E   
Sbjct: 358 LYAGFLGDRDRRLCEQVRMADPLQLTQERWPFDDERLPELLFRYRARNFPDTLNPEEHGR 417

Query: 420 WLEHRKKMLTR---------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W    ++ L+             +    +  +L         ++ ++     Y Q +
Sbjct: 418 WRLFCQQRLSSPEWGAPNTLESFDAAMREWMAL-----STPVQQEVLREWQGYSQQL 469


>gi|152979065|ref|YP_001344694.1| exonuclease I [Actinobacillus succinogenes 130Z]
 gi|150840788|gb|ABR74759.1| Exodeoxyribonuclease I [Actinobacillus succinogenes 130Z]
          Length = 471

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 213/472 (45%), Positives = 305/472 (64%), Gaps = 5/472 (1%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M +  F IYDYE+FG + A DRPAQFAG+R D  +  I    + +CK  +DYLP PEAV 
Sbjct: 1   MNDFSFFIYDYESFGINPATDRPAQFAGIRTDADFNVIGEPVMLYCKQTNDYLPSPEAVL 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGITPQ+    G+ E EF+  +   FS PNTC++GYNNIR+DD  +R  FYRNF D Y 
Sbjct: 61  VTGITPQECNEKGLPEPEFAASVLAEFSRPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYE 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
           +SW NGNSRWDLLD++RA YA  P+GI+W   DDG  SF+L+ L  ANGI H NAHDA +
Sbjct: 121 YSWKNGNSRWDLLDIVRACYALRPEGIEWAYDDDGMPSFRLERLTEANGIAHENAHDAMS 180

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DVYAT+A+  LI+ K+PKLF+Y ++ R K ++  LI++ +MTPLVHVSGM G  R N  L
Sbjct: 181 DVYATIAMAKLIKRKQPKLFQYFFENRGKREIEHLINVADMTPLVHVSGMLGNYRGNCTL 240

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHL 297
           +APV WHP  +++VI C+LS ++         +L   L+T   +L  +G +PVP+K VH+
Sbjct: 241 VAPVGWHPVNQNAVIVCDLSQNIDDLLTKSIEELRTALYTKKTDLAAQGQLPVPLKLVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDV 356
           NKCPIL P +    E+ ER GID + C ENL  LRQ   +R + + I+ + +    S +V
Sbjct: 301 NKCPILAPANTLLPENAERLGIDRQFCSENLQKLRQSFEVRSKIEEIFREEHRFEPSDNV 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           + +LY GFF++ D+  +  + +   E+L+   L F D+R+P+L F YRAR+F  TL+  E
Sbjct: 361 EIELYSGFFSNNDKNNLAILRQLPIEKLAEHGLTFEDKRIPDLIFHYRARHFFKTLTRTE 420

Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           +  W ++R++ L      +++ ++Q+L  EY   E K  L++ +Y Y   ++
Sbjct: 421 QLQWEKYRRRKL-EKEATDFEQRMQNLVMEYGDFEDKLNLLHQVYAYASNLL 471


>gi|90416366|ref|ZP_01224298.1| exodeoxyribonuclease I [marine gamma proteobacterium HTCC2207]
 gi|90332091|gb|EAS47305.1| exodeoxyribonuclease I [marine gamma proteobacterium HTCC2207]
          Length = 478

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 179/469 (38%), Positives = 268/469 (57%), Gaps = 7/469 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M N F  +DYETFG + ++DRP+QFAG+R D     I    V +C+P  D LP P+A  +
Sbjct: 1   MDNTFYWHDYETFGINPSIDRPSQFAGLRTDFDLNPIGEPLVIYCQPQPDLLPAPQACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ AL++G+ E  F   IHQ  S  NTC +GYN+IRFDD  +R   YRNFYD Y+ 
Sbjct: 61  TGITPQHALKEGLAEPAFIEAIHQQMSRANTCSVGYNSIRFDDEVTRYTLYRNFYDPYQR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWD++D++R   A  P+GI+WP  + G  SF+L+DL  ANG+ H  AHDA +D
Sbjct: 121 EWKNGNSRWDIIDMLRLCRALRPEGIEWPDHEPGRPSFRLEDLTAANGLAHEAAHDALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+A+  L+++K+P+LF+Y    R K Q+  ++D++   P  H+SGM    +   AL+
Sbjct: 181 VTATIAMAKLVKDKQPRLFDYALQNRGKKQVAAMLDLKARKPFFHISGMLAKEQLYGALM 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+A HP   + +I  +LS D      L+  Q+  R+FT+  +L +G   +P+K +H+NK
Sbjct: 241 MPLAQHPTNSNGIICFDLSADPEALVSLNEHQIRDRVFTASADLPEGAERIPLKVIHINK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
            P++           +R  ID +RC  N   L     L D+ + ++ +       D + Q
Sbjct: 301 APVVTTHKLVDTATAKRLDIDLERCERNWQRLSSMD-LSDKLQLVFREQKFPPKSDAEQQ 359

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY GF  + D+ ++D + R      S     F+D+R  +L F YRAR FP +LS +E+Q 
Sbjct: 360 LYGGFLPNQDKGLLDDVRRATASDFSQQQFYFADQRYNQLLFSYRARYFPESLSAEEQQT 419

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
           WLE  +  LT        +++ +  L  L  +    + K G++ AL  +
Sbjct: 420 WLESCRWRLTDEQSGYLTLQQNRRTLDQLLADTSLSDHKRGVLQALESW 468


>gi|121594205|ref|YP_986101.1| exonuclease I [Acidovorax sp. JS42]
 gi|120606285|gb|ABM42025.1| Exodeoxyribonuclease I subunit C [Acidovorax sp. JS42]
          Length = 479

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 188/479 (39%), Positives = 274/479 (57%), Gaps = 14/479 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG +   DRPAQFA VR D +  +I    + +C+PA+DYLPDP++  IT
Sbjct: 1   MHTFLWHDYETFGANTRRDRPAQFAAVRTDAELNEIGEPLMIYCRPANDYLPDPQSCLIT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ  L  G+ E EF+ RI    ++P T  +GYN IRFDD  +R +F+RN  D Y   
Sbjct: 61  GITPQLCLEKGLPEREFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYARE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  YA  P+GI+WP   DG  SF+L+ L+ ANG+ H  AHDA +DV
Sbjct: 121 WQNQCGRWDLLDVVRLTYALRPEGIEWP-EVDGKPSFRLEHLSKANGLAHEAAHDALSDV 179

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKL----IDIQNMTPLVHVSGMFGASRSNT 237
            AT+AL  LIR + P+LF++      K+++          Q   P +HVSGMF A R   
Sbjct: 180 RATIALARLIRSRNPRLFDFALSLHKKDRVAAELRLPTTAQEARPFLHVSGMFPAERGCL 239

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296
           A++ P+A HP  K+ ++  +L+ D      L + ++  RLFT   +L +G+  +P+K VH
Sbjct: 240 AVMWPLASHPTNKNELLAWDLAQDPSELARLSADEIRTRLFTRAADLPEGVTRLPLKSVH 299

Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           LNK P+++  ++    +  +RWGID  +   +    R   +L   +  ++         D
Sbjct: 300 LNKSPMVVGNLNTLTPDMAQRWGIDLPQAALHAAAARALPDLTAVWAQVFQ-RPAEGPLD 358

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           VD  LY GF  + DR+ ++R+     E+L+   L F D RL EL +RYRARNFPHTLS +
Sbjct: 359 VDQDLYGGFVGNEDRRRLNRLRALPGEELAHERLGFDDARLAELVWRYRARNFPHTLSPE 418

Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           E++ W  HR  ML          +    +L +L  E   DE  E ++ A+Y+Y + + P
Sbjct: 419 EQERWEAHRVAMLVEGEGGGLTFDALFERLDTLGAE-ADDERTEAILGAVYDYAESIAP 476


>gi|119946086|ref|YP_943766.1| exodeoxyribonuclease I [Psychromonas ingrahamii 37]
 gi|119864690|gb|ABM04167.1| Exodeoxyribonuclease I subunit C [Psychromonas ingrahamii 37]
          Length = 486

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 185/469 (39%), Positives = 277/469 (59%), Gaps = 4/469 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 +DYETFG +   DRPAQFAG+R D     I   + ++C+P +DYLP+PEA  IT
Sbjct: 16  QPTLYWHDYETFGLNPGTDRPAQFAGIRTDLDLNIISEPDEWYCRPPNDYLPNPEACLIT 75

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+AL+ G+VE+EF   I+Q FS  NTC++GYNNIRFDD  +R   YRNF D Y+  
Sbjct: 76  GITPQRALQKGMVESEFIALINQRFSQKNTCVVGYNNIRFDDEITRFTLYRNFRDPYQRE 135

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NG SRWD++D++RA YA  P+GI WP  ++ A SF+L+ L   NG+ H  AHDA +DV
Sbjct: 136 WKNGCSRWDIIDLVRACYALRPEGINWPVDENDAPSFRLELLTKENGLAHQQAHDAMSDV 195

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  LI+E  PKL++Y +  R KN +   + + + TP+VHVSGMF A +   + + 
Sbjct: 196 YATIAMAKLIKETHPKLYDYFFGLRKKNNVMAQLKLGSNTPVVHVSGMFPALQGCASYVM 255

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+  HP  K++VI  +L+ D+     L   Q+   L+T   +L +G+    IK +H+NKC
Sbjct: 256 PITQHPSNKNAVIVVDLNKDLSGLATLSIEQIQTYLYTPSIDLPEGIERPAIKLIHINKC 315

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           PI+ P     +E  ++ GID K+C  +L  L  Q  L ++ + ++ +   S+      ++
Sbjct: 316 PIIAPAKTLTEERADQLGIDRKQCRRSLDFLSNQPELAEKLQKVFIQETPSTENKSVEEM 375

Query: 361 --YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
               GF +  D+ + + +  +    L      F D RL  L + YRARN P +L   E++
Sbjct: 376 LYSGGFLSAADKALSEEVCNSTWPALGNKEFNFEDDRLGILLWHYRARNAPDSLDVAEQE 435

Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W  HR+  L  +  E Y  KL++L+ E + +  K  L+  LY+YL ++
Sbjct: 436 KWARHRQNYLLENS-EAYIEKLEALALENQSNPEKIELLKQLYDYLNYL 483


>gi|331009925|gb|EGH89981.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 434

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 189/433 (43%), Positives = 269/433 (62%), Gaps = 5/433 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D +  +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+PKL++YL+  R+K ++++ + +  M PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D +      T L +     +D+   +Y K   ++S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMEGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417

Query: 419 DWLEHRKKMLTRS 431
            W +  ++ L+  
Sbjct: 418 RWQDFCQQRLSDP 430


>gi|109898489|ref|YP_661744.1| exodeoxyribonuclease I [Pseudoalteromonas atlantica T6c]
 gi|109700770|gb|ABG40690.1| Exodeoxyribonuclease I subunit C [Pseudoalteromonas atlantica T6c]
          Length = 476

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 205/474 (43%), Positives = 291/474 (61%), Gaps = 8/474 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T     +DYET+G +   D   QFAG+R D     I    + F +  +DYLP+P+A  IT
Sbjct: 3   TPSIYWHDYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPNPQACLIT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ +LRDG+VE +F ++IHQ FS P TC+ GYNNIRFDD  +R   YRNFYD Y   
Sbjct: 63  GITPQHSLRDGMVEPDFIQKIHQEFSAPETCVAGYNNIRFDDEVTRYTLYRNFYDPYGRE 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD++DV+RA YA  P+GI+WP +DDG+ SFKL+DL+ AN IEH  AHDA +DV
Sbjct: 123 WRNGNSRWDIIDVVRACYALRPEGIEWPLKDDGSPSFKLEDLSKANNIEHAAAHDAMSDV 182

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           +AT+ +  L++  +PKL++YL++ R K  +  L DI   TPLVH+S    A       IA
Sbjct: 183 HATIGMAKLVKTAQPKLYDYLFNLRFKKNVIALFDINAHTPLVHISSKLPAINGCCTWIA 242

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           PVA HP  K++ I  NL+ D++   DL   ++ ++L+T  + L +G   +PIK +H+NK 
Sbjct: 243 PVAQHPTNKNAFIVVNLALDIQPLIDLSVDEIIEKLYTPSNMLEEGEQRLPIKLIHVNKS 302

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P++ P     + +  R GI+ + CL NL +L+Q   L  +  A+++    +  QD D  L
Sbjct: 303 PVIAPAKTLDESNAARLGINREVCLSNLKVLKQHPELVAKLIAVHSTTRDNKEQDADHAL 362

Query: 361 YDG-FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y G FF+  DR +MD++L ++ EQL+ L LPF D RL  L F Y+ RNFP +L+E+E Q 
Sbjct: 363 YSGAFFSPKDRALMDQVLHSSTEQLADLTLPFEDPRLDNLLFYYKGRNFPTSLNEQELQR 422

Query: 420 WLEHRKKMLTRSRIE------EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W  HRK  L            +Y   L+ LS +Y+ +  K  ++ ALY Y + +
Sbjct: 423 WQNHRKFRLLDDTSPSSITMTDYVQTLELLSEQYQSNNDKLAILKALYTYAEQL 476


>gi|331004853|ref|ZP_08328270.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC1989]
 gi|330421307|gb|EGG95556.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC1989]
          Length = 476

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 186/475 (39%), Positives = 273/475 (57%), Gaps = 13/475 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N    +DYET+G   + D+P+QFAG+R D     +    V +C+P+ D LP PEA  +T
Sbjct: 1   MNTLYWHDYETWGASPSQDKPSQFAGIRTDEDLNIVGEPLVIYCQPSSDCLPQPEACLLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQKAL++G+ E  F  +IHQ  +   TC +GYN+IRFDD  +R   YRNFYD Y   
Sbjct: 61  GITPQKALKEGLSEPIFFEKIHQQLAQEKTCGVGYNSIRFDDEMTRYGLYRNFYDPYERE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD++D++R  YA  P+ + WP+ D G  SFKL+ L+ ANG+ H  AHDA +DV
Sbjct: 121 WQNGNSRWDIIDMVRLCYALRPETLCWPTNDSGVVSFKLELLSKANGLLHDAAHDALSDV 180

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+AL  LI++K+P+L++Y Y  R+KN+++ L+++    P++HVS  F  SR    L+ 
Sbjct: 181 YATIALAKLIKQKQPELYQYAYSLRDKNKVKALMNVAQRKPILHVSSRFPVSRGCAGLML 240

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+A HP  K+SVI  +LS D     +L + ++A+RL+    +L +G   +P+KE+H NK 
Sbjct: 241 PLAEHPTNKNSVIAYDLSEDPTPLLELSAEEIAERLYVKQADLPEGASRIPLKEIHFNKS 300

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P++  +     +  +R GID   C  +   LR         + +++        D + QL
Sbjct: 301 PMVATVKLLDDQSAQRLGIDKSTCEAHWQQLRAADITSK-LQDVFSTQRFPPKHDPEQQL 359

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGF    D+ +M  I    PE LS  +    D RL  L FRYRAR++P TL+E EKQ W
Sbjct: 360 YDGFINSHDKHLMLAIRGAEPETLSHYSSQLKDPRLKALLFRYRARHYPQTLNELEKQQW 419

Query: 421 LEHRKKMLTRSR------IEEYKNKLQSLSGEYKGD-EGKEGLINALYEYLQWVI 468
            E     LT         ++EY  +L      Y  D E  + +++ L  Y   ++
Sbjct: 420 QEWVYSRLTDETAGASIVLDEYFERL----SAYTDDIEANQQIVDDLLAYGDAIL 470


>gi|332141096|ref|YP_004426834.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551118|gb|AEA97836.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 478

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 192/474 (40%), Positives = 277/474 (58%), Gaps = 8/474 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  F+ +D+ETFG     D P QFA VR D     +          A+DYLP PEA  +T
Sbjct: 5   TPTFLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVVGKPINIMSAIANDYLPHPEACLVT 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+ +RDG  EA+F+ +I+   S PNTC +G+N+IRFDD  SR +FYRNFYD Y   
Sbjct: 65  GITPQQTIRDGSNEADFAAKIYHEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSRE 124

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD++DV RA YA  PDGI WP R+DG+ SF+L+ L  AN I H NAHDA  DV
Sbjct: 125 WRNGNSRWDIIDVARACYALRPDGINWPLREDGSPSFRLEALTAANNIGHDNAHDALNDV 184

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT++L  LI+EK+P+LF+Y    RNK+ + + ID+   + L+H+S    AS+     + 
Sbjct: 185 YATISLAKLIKEKQPRLFDYALSLRNKHSVMQQIDLSKPSVLLHISSKLPASQGCCTWVM 244

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP-IKEVHLNKC 300
           P+A HP   ++ I  +LS D+    +  + ++ + L+   D        P +K +H+N+ 
Sbjct: 245 PIAKHPTNSNAFIVIDLSHDIDSVLNDSADEIKQALYAPSDTYDDARERPGLKLIHVNRS 304

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P +       +++ ER G+D +RCL+N   L    +L  +  AIY +   SS  D+D  L
Sbjct: 305 PFITTAKAMTEDNAERLGLDRERCLDNYKKLASTPDLVSKIVAIYEEERHSSELDIDHAL 364

Query: 361 YDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y G F +D DR+  + ++   PE L+T         L +L FRYRARN+P+TLS  E   
Sbjct: 365 YSGGFLSDEDRRWCENVINAKPEDLATFGDKTQHEGLKKLLFRYRARNYPNTLSADEMTK 424

Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W  HR+  LT S       +E Y  +L+SL+ E+  +  K+ ++ ALY+Y + +
Sbjct: 425 WQYHRQARLTDSDFHGSITLETYMMRLESLAHEHSDNPEKQAILRALYQYAENL 478


>gi|222110882|ref|YP_002553146.1| exonuclease i [Acidovorax ebreus TPSY]
 gi|221730326|gb|ACM33146.1| Exodeoxyribonuclease I [Acidovorax ebreus TPSY]
          Length = 479

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 186/479 (38%), Positives = 272/479 (56%), Gaps = 14/479 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG +   DRPAQFA VR D +  +I    + +C+PA+DYLPDP++  IT
Sbjct: 1   MHTFLWHDYETFGANTRRDRPAQFAAVRTDAELNEIGEPLMIYCRPANDYLPDPQSCLIT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ  L  G+ E EF+ RI    ++P T  +GYN IRFDD  +R +F+RN  D Y   
Sbjct: 61  GITPQLCLEKGLPEREFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYARE 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDLLDV+R  YA  P+GI+WP   DG  SF+L+ L+ ANG+ H  AHDA +DV
Sbjct: 121 WQNQCGRWDLLDVVRLTYALRPEGIEWP-EVDGKPSFRLEHLSQANGLAHDAAHDALSDV 179

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKL----IDIQNMTPLVHVSGMFGASRSNT 237
            AT+AL  LIR + P+LF++      K+++          Q   P +HVSGMF   R   
Sbjct: 180 RATIALARLIRSRNPRLFDFALSLHKKDRVAAELRLPTTAQEARPFLHVSGMFPTERGCL 239

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296
           A++ P+A HP  K+ ++  +L+ D      L + ++  RLFT   +L +G+  +P+K VH
Sbjct: 240 AVMWPLASHPTNKNELLAWDLAQDPSELARLSADEIRTRLFTRAADLPEGVTRLPLKSVH 299

Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           LNK P+++  ++       +RWGID  +   +    R   +L   +  ++         D
Sbjct: 300 LNKSPMVVGNLNTLTPAMAQRWGIDLPQAALHAAAARALPDLTAVWAQVFQ-RPAEGPLD 358

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           VD  LY GF  + DR+ ++R+     E+L+   L F D RL EL +RYRARNFPHTLS +
Sbjct: 359 VDQDLYGGFVGNEDRRRLNRLRALPGEELAHERLGFDDARLAELVWRYRARNFPHTLSPE 418

Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           E++ W  HR  +L          +    +L +L  E   DE  E ++ A+Y+Y + + P
Sbjct: 419 EQERWEAHRMAVLVEGEGGGLTFDALFERLDTLGAE-ADDERTEAILGAVYDYAESIAP 476


>gi|327479722|gb|AEA83032.1| exonuclease I [Pseudomonas stutzeri DSM 4166]
          Length = 477

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 188/475 (39%), Positives = 278/475 (58%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT     YD+ET G   + DRP Q AG+R +   E+I      +C+P DD LP P A  +
Sbjct: 1   MTPSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP    + G+ EA+F   +H+  S P TC  GYN++RFDD  +R   YRNFYD Y  
Sbjct: 61  TGITPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+D++R  YA  P+GI WP   DG  + KL+ L+ ANG+EH+NAHDA +D
Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIGWPED-DGRVTLKLERLSAANGLEHLNAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+ L  LIRE++P+L+EYL++ R K+ + + + +  + PLVHVSG F A+R   +++
Sbjct: 180 VRATIGLARLIRERQPRLYEYLFNLRRKHAVLEQVTL--LEPLVHVSGRFSAARHFLSVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHPR ++++I C+L  + R      +  L +RL+T  DEL +G +PVP+K VH+NK
Sbjct: 238 LPLAWHPRNRNALIVCDLQAEARPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINK 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
           CP+L P+   ++   +R  +D   C E    LR+Q +    +   +Y +       D + 
Sbjct: 298 CPVLAPLKVLREADIQRLELDLPACHERADALREQRHVWSPKLDEVYREEGFIGVDDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  + DR++ DRI   AP +L+     F D RL EL FRYRARNFP  LS +E+ 
Sbjct: 358 QLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLFRYRARNFPEALSAEERV 417

Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W    ++ L+       + + +++  +Q           ++ L+    EY + +
Sbjct: 418 RWQRFCQQRLSGEIAGAPNTLAQFEADIQQFML--TATPAQQQLLQQWREYGRAL 470


>gi|326795181|ref|YP_004313001.1| exodeoxyribonuclease I [Marinomonas mediterranea MMB-1]
 gi|326545945|gb|ADZ91165.1| Exodeoxyribonuclease I [Marinomonas mediterranea MMB-1]
          Length = 482

 Score =  362 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 186/476 (39%), Positives = 281/476 (59%), Gaps = 8/476 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + +  +D+ET G D A DRP QFAG+R D ++  I    + +CK A+D LP+P+A  +T
Sbjct: 6   PSSYFWFDFETTGVDPAKDRPMQFAGIRTDLEFNPIGDPIMLYCKLAEDVLPNPDACLLT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A R+G+ EAEF   I +  S P TC +GYN +RFDD   R  FYRNF D Y   
Sbjct: 66  GITPQDANREGLCEAEFMAEIEKELSQPGTCALGYNTLRFDDEVVRYGFYRNFIDPYARE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N  SRWD++D++R  YA  PDGI+WP  D+G  S KL+ L  ANG+ H  AHDA +DV
Sbjct: 126 WQNKCSRWDVIDLVRMTYAMRPDGIKWPKNDEGKVSLKLELLTKANGLAHEQAHDALSDV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           Y T+A+  LIR+ +PKLF+Y    R+K++L++ ID   M P +H+SGMFG  +   A +A
Sbjct: 186 YGTIAIAKLIRDTQPKLFDYYAKMRHKSELQQFIDPYRMKPFLHISGMFGLDKKFAAFVA 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+A HP  K+ +I  +L  D      L   ++ +R+F++ +EL  L  +P+K +HLN+ P
Sbjct: 246 PLAPHPSNKNGIIVYDLMEDATPLVTLTVEEIRQRVFSTTEELGELTRLPLKVIHLNRAP 305

Query: 302 ILMPIDYCK-KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            + P  + K  +  ER  +D   C  NL++L+    L  +   ++ +      +D D+ L
Sbjct: 306 AVAPATFLKAADVVERLALDGDVCRTNLSILKSTQELVAKLSKVFEQEERRIDKDPDTML 365

Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y  GFF+  D+Q M+ I  T  E L  + + F DRRLPE+F RY  RN+P  LSE+++++
Sbjct: 366 YSGGFFSREDKQRMEEIRSTPIEALGEIEMAFDDRRLPEMFMRYLGRNYPDQLSEQQREE 425

Query: 420 WLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W E+R+  L  +       ++ +  +L  L+ + +    K  ++  L +Y Q + P
Sbjct: 426 WEEYRQTRLLNADGGGTIHMDAFFARLNELAQDEELTASKRLMLQDLSDYAQSIYP 481


>gi|16273288|ref|NP_439529.1| exonuclease I [Haemophilus influenzae Rd KW20]
 gi|1169569|sp|P45188|EX1_HAEIN RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
           Full=DNA deoxyribophosphodiesterase; Short=dRPase
 gi|1574211|gb|AAC23023.1| exodeoxyribonuclease I (sbcB) [Haemophilus influenzae Rd KW20]
          Length = 473

 Score =  362 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 217/468 (46%), Positives = 303/468 (64%), Gaps = 4/468 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF + Y +SW 
Sbjct: 66  TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIEPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  AN IEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANSIEHENAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF+Y ++ R K ++ KL+D   MTPLVHVSGM G  R N   +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           AWHP  ++++I C+L+GD+       + +L   L+T   EL+  G+  VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
           IL P      E   R GID + CL+NL  LR   ++R++   I+N+    +S+ +V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+  E+  W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            ++R+  L +S +E ++  LQ L   +  +  K  L+  +YEY   ++
Sbjct: 426 KKYRQNKLEKSAVE-FEASLQRLVEXHSDNSEKLSLLQQVYEYGIKLL 472


>gi|302188463|ref|ZP_07265136.1| exonuclease I [Pseudomonas syringae pv. syringae 642]
          Length = 476

 Score =  362 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 191/475 (40%), Positives = 275/475 (57%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D    +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+PKL++YL+  R+K ++++ + +  M PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L +RL+T HD L  G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D        T L + +    D+   +Y K   ++S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSERREVWHDKLATVYGKDDFAASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLPEL FRYRARNFP TLS +E+ 
Sbjct: 358 QLYDGFMGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417

Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W +  ++ L          + ++   L  +         +  ++    +Y   +
Sbjct: 418 RWRDFCQQRLRSPEWGAPNTLHDFTAAL--IECSLSAAPEQLEVLRQWQDYAHEL 470


>gi|298488609|ref|ZP_07006639.1| Exodeoxyribonuclease I [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298156950|gb|EFH98040.1| Exodeoxyribonuclease I [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 437

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 189/433 (43%), Positives = 268/433 (61%), Gaps = 5/433 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D +  +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+PKL++YL+  R+K ++++ + +  M PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D        T L +     +D+   +Y K   ++S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417

Query: 419 DWLEHRKKMLTRS 431
            W +  ++ L+  
Sbjct: 418 RWQDFCQQRLSDP 430


>gi|52425136|ref|YP_088273.1| exonuclease I [Mannheimia succiniciproducens MBEL55E]
 gi|52307188|gb|AAU37688.1| SbcB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 472

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 216/472 (45%), Positives = 309/472 (65%), Gaps = 5/472 (1%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT+  F IYD+E+FG + A DRPAQFAG+R D+ +  I    +F+CK  +DYLP PEAV 
Sbjct: 1   MTDFSFFIYDFESFGVNPADDRPAQFAGIRTDKDFNIISDPVMFYCKQTNDYLPAPEAVM 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGITPQ+    G+ E EF+ RI   FS PNTCI+G+NNIR+DD  +R  FYRNF D Y 
Sbjct: 61  VTGITPQECNEKGISEPEFAARILAEFSQPNTCIMGFNNIRYDDEMTRYTFYRNFIDPYE 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
           +SW NGNSRWDLLD++RA YA  P+GI WP  ++G  SF+L+ L  ANGIEH NAHDA A
Sbjct: 121 YSWKNGNSRWDLLDLVRACYALRPEGINWPLDEEGMPSFRLEKLTKANGIEHENAHDAMA 180

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DVYAT+A+  LI+EK+PKLF++ ++ R K ++ K ID   MTPLVHVSGM G  R N   
Sbjct: 181 DVYATIAMAKLIKEKQPKLFQFFFENRGKKEIEKWIDTAEMTPLVHVSGMLGNYRGNCTW 240

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHL 297
           IAP+AWHP  +++VI C+L+ ++    +  +V+L + L+T   EL+  G++PVP+K VH+
Sbjct: 241 IAPLAWHPINQNAVIACDLAQNIDDLLNKSAVELRENLYTQKTELENDGVLPVPLKLVHI 300

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDV 356
           NKCPI+ P      E+ +R GID + CL+NL  L++  ++RD+   ++  +     S +V
Sbjct: 301 NKCPIIAPAKTLLPENAQRLGIDRQFCLDNLKKLQKSLDIRDKVIEVFNEERKFDDSDNV 360

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           +++LY GFF+  D+  M  +    PE+L+   L F D+R+P+L F YRAR+F  TL+  E
Sbjct: 361 ETELYSGFFSKADKNNMTILRTLEPEKLADSGLQFEDKRIPDLLFHYRARHFYKTLNRGE 420

Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           +  W ++R++ L      ++   LQ L  E      K  L+  +Y+Y   ++
Sbjct: 421 QIKWQKYRRQKL-EKSAVQFMESLQHLGEENSNHPDKLKLLQQIYDYGIKLL 471


>gi|330973535|gb|EGH73601.1| exonuclease I [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 476

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 191/472 (40%), Positives = 273/472 (57%), Gaps = 13/472 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D    +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+PKL++YL+  R+K ++++ + +  M PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L +RL+T HD L  G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHAPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D        T L +       +  AIY K   ++S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSENREVWHGKLAAIYGKDDFAASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLPEL FRYRARNFP TLS +E+ 
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417

Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
            W +  ++ L        + + ++      +         +  ++    +Y 
Sbjct: 418 RWRDFCQQRLRNPEWGAPNTLHDFTAAW--VECSLSAGPEQLEVLRQWQDYA 467


>gi|332526171|ref|ZP_08402306.1| exonuclease I [Rubrivivax benzoatilyticus JA2]
 gi|332110011|gb|EGJ10639.1| exonuclease I [Rubrivivax benzoatilyticus JA2]
          Length = 492

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 187/480 (38%), Positives = 273/480 (56%), Gaps = 13/480 (2%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    F  +DYETFGR    DRPAQFAG+R D +  +I +  ++FC+P  D LPDPE+  
Sbjct: 14  MAETTFFWHDYETFGRVPRRDRPAQFAGIRTDAELNEIGAPAMWFCQPPTDTLPDPESCL 73

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI PQ+AL +GV E EF+ RI    + P T  +GYN+IRFDD  +R +F+RN  D Y 
Sbjct: 74  LTGILPQQALAEGVAEREFAARIEAALAAPGTIGVGYNSIRFDDEVTRFLFWRNLIDPYA 133

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             W NG  RWDLLDV+R  +A  P+GI+WP  +DG  SFKL+ L  ANG+ H  AHDA +
Sbjct: 134 REWQNGCGRWDLLDVVRCCWALRPEGIEWPKHEDGRPSFKLEHLTAANGLAHEAAHDALS 193

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DV AT+AL  LIR+++P+L+++    R+K+ +R  I +    P +H+SGM+G      A+
Sbjct: 194 DVRATIALARLIRQRQPRLWDFCLKLRHKDAVRTEIGV--GRPFLHLSGMYGVENGCMAV 251

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHL 297
           + P+A HP  ++ +I  +L+ D      LD+  + +R++T  +EL   G   +PIK VHL
Sbjct: 252 VWPLAPHPTNRNELIVWDLAQDPAELASLDAETVRRRMYTKTEELAAAGETRLPIKTVHL 311

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR-FKAIYNKPYTSSSQDV 356
           NK P+++          ERWG+D +R L +           +  +  ++ KP      DV
Sbjct: 312 NKSPVVIGNLKTLGPARERWGLDLERALVHAERAAALGRTLEPLWAQVFVKPAAGGPVDV 371

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D  LY GF  D DR+ + R+       L++    F D RL EL FRYRARNF  TL   E
Sbjct: 372 DEDLYGGFLGDEDRRQLQRLRGLDGAALASRRPAFDDPRLDELLFRYRARNFADTLDADE 431

Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSG--EYKGDEGKEGLINALYEYLQWVIP 469
           ++ W  HR   L         ++ Y  ++  L+     + DE  + ++ ALY++ + V P
Sbjct: 432 RERWAAHRHARLIAGAGGVLTLQAYAERIDELAEAAAERDDERAQSILEALYDWAEQVAP 491


>gi|330981526|gb|EGH79629.1| exonuclease I [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 476

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 188/475 (39%), Positives = 271/475 (57%), Gaps = 13/475 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D    +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  A DA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAPDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+PKL++YL+  R+K ++++ + +  M PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D        +  L +RL+T HD L  G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D          L + +    D+  A+Y K    +S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARAAQLSERREVWHDKLAAVYGKDDFVASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLPEL FRYRARNFP TLS +E+ 
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417

Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W +  ++ L          + ++      +         +  ++    +Y   +
Sbjct: 418 RWRDFCQQRLRSPEWGAPNTLHDFTTAW--VECSLSAAPEQLEVLRQWQDYANKL 470


>gi|66047247|ref|YP_237088.1| exonuclease I [Pseudomonas syringae pv. syringae B728a]
 gi|63257954|gb|AAY39050.1| Exodeoxyribonuclease I [Pseudomonas syringae pv. syringae B728a]
          Length = 476

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 190/472 (40%), Positives = 272/472 (57%), Gaps = 13/472 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D +  +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPAACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+PKL++YL+  R+K ++++ + +  M PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L +RL+T HD L     PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHAPLLHEDAEILKRRLYTRHDALSDGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D        T L +       +  AIY K   ++S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSENREVWHGKLAAIYGKDDFAASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLPEL FRYRARNFP TLS +E+ 
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417

Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
            W +  ++ L        + + ++      +         +  ++    +Y 
Sbjct: 418 RWRDFCQQRLRNPEWGAPNTLHDFTAAW--VECSLSAGPEQLEVLRQWQDYA 467


>gi|330966612|gb|EGH66872.1| exonuclease I [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 431

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 188/433 (43%), Positives = 265/433 (61%), Gaps = 5/433 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D +  +I      +C+P+DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   + P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  P+GI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+P+L++YL+  R K +++K I +  M PLVH+SG F A+RS   ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQKHIHL--MKPLVHISGRFSAARSYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D       D+  L +RL+T  D LK G +PVP+K +H+N+
Sbjct: 238 VPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
           CP++ P+   + E  +R  +D          L +     +D+ + +Y K    +S+D + 
Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSESREVWQDKLQVLYGKDDFVASEDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  D DR++ +++ +  PEQL+    PF D RLP+L FRYRARNFP TLS  E+ 
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSTAEQH 417

Query: 419 DWLEHRKKMLTRS 431
            W +  ++ L+  
Sbjct: 418 RWQDFCRQRLSSP 430


>gi|15602476|ref|NP_245548.1| exonuclease I [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720883|gb|AAK02695.1| SbcB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 475

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 220/468 (47%), Positives = 307/468 (65%), Gaps = 4/468 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG D A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 8   SFFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPEAVLVTGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+ RI Q FS PNTC++G+NNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 68  TPQECNEKGIPEPEFAERILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   ++G  SF+L+ L  ANGIEH NAHDA ADVYA
Sbjct: 128 NGNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANGIEHSNAHDAMADVYA 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF+Y ++ R K ++ KLID  N+TPLVHVSGM G  R NT  I P+
Sbjct: 188 TIAMAKLIKEKQPKLFQYFFENRGKKEVEKLIDTANLTPLVHVSGMLGNHRGNTTWIVPL 247

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCP 301
           AWHP  +++VI C+L+ ++    + D+ +L + L+T   EL  KG++PVP+K VH+NKCP
Sbjct: 248 AWHPTNQNAVICCDLAANITDLLNKDANELRQNLYTPKAELIEKGILPVPLKLVHINKCP 307

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
           IL P      E+  R GID   CLENL  L+    +RD+   I+N+  + + S +V+++L
Sbjct: 308 ILAPAKTLLPENAARLGIDRTFCLENLQRLKLSPPIRDKVTEIFNEERHFAPSINVETEL 367

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF   D+  M  +     E+L+   L F D R+P+L F YRAR++ ++L+  E+  W
Sbjct: 368 YNGFFDYNDKNNMAILRHLPEEKLAEHGLAFKDTRIPKLLFHYRARHYFNSLTRAEQIQW 427

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            ++R K L +  + +++  LQ L  E   +     L+  +YEY   ++
Sbjct: 428 QKYRHKKLDQVAL-QFEQSLQRLIAENSENPTNLALLQKVYEYGAKIL 474


>gi|90022039|ref|YP_527866.1| exonuclease I [Saccharophagus degradans 2-40]
 gi|89951639|gb|ABD81654.1| Exodeoxyribonuclease I subunit C [Saccharophagus degradans 2-40]
          Length = 485

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 185/478 (38%), Positives = 286/478 (59%), Gaps = 16/478 (3%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F  +DYET+G + A+DRP+QFAGVR D     I    V +CKP +D  P+PEA  +
Sbjct: 1   MQKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TG+TPQ+ L  GV E EF ++IH+  + P TC +GYN+IRFDD  +R   YRN++D Y  
Sbjct: 61  TGLTPQETLAKGVTEREFIKQIHRELAKPGTCGVGYNSIRFDDEVTRYTLYRNYFDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWD++D++R  YA  P+GI+WP   DG  SF+L++L   NGI H +AHDA +D
Sbjct: 121 EWRNGNSRWDIIDMVRLCYALRPEGIEWPV-VDGKPSFRLENLTKVNGIVHASAHDAYSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+ L  L+REK+P L+E++ + R K +  KL+D+ +  P++H+S  F +      LI
Sbjct: 180 VEATIKLARLVREKQPALYEHVVNNRGKREATKLLDVASKKPMLHISSKFSSENGCAGLI 239

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
           AP+A+HP  K++VI  NL+ D +   DL + ++  R+FT+  +L +G+  +P+K +HLNK
Sbjct: 240 APLAYHPVNKNAVIVINLNADPKPLFDLSADEIRARIFTATKDLPEGVERLPVKLIHLNK 299

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           CPIL+      ++   R GID  +C ++ + L++     ++ + ++       S D +  
Sbjct: 300 CPILLTPKILDEQAQARLGIDKAQCEKHWSQLQRMDIT-EKLQQVFATNEFEGSLDPERM 358

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF  D D+ +M  + +    +LS  N  FSD+RL ++  RY+ARNFP  L++ E+ +
Sbjct: 359 LYDGFVGDTDKYVMADVRKANGAELSKHNFVFSDKRLNDMLLRYKARNFPDDLTDSERAE 418

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEG--------KEGLINALYEYL 464
           W E   + L         + E  +KL ++  E +  +         K  +I AL +Y+
Sbjct: 419 WREFVSQRLKDGGDGVLSLSELNDKLVNIRAELEQQQDQSPEQIAKKLDIIKALEQYV 476


>gi|239994498|ref|ZP_04715022.1| exodeoxyribonuclease I [Alteromonas macleodii ATCC 27126]
          Length = 476

 Score =  359 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 191/473 (40%), Positives = 275/473 (58%), Gaps = 8/473 (1%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+ +D+ETFG     D P QFA VR D     I          A+DYLP PEA  +TG
Sbjct: 4   PTFLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVIGKPINIMSAIANDYLPHPEACLVTG 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ+ +RDG  EA+F+ RI+Q  S PNTC +G+N+IRFDD  SR +FYRNFYD Y   W
Sbjct: 64  ITPQQTIRDGSNEADFAARIYQEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSREW 123

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWD++D+ RA YA  PDGI WP R+DGA SFKL+ L  AN I H NAHDA +DVY
Sbjct: 124 RNGNSRWDIIDLARACYALRPDGINWPRREDGAPSFKLEALTAANNIGHENAHDALSDVY 183

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+AL  LI+EK+P+LF+Y    R+K  + + ID+   + L+H+S    AS+     + P
Sbjct: 184 ATIALAKLIKEKQPRLFDYALSLRSKQTVMQQIDLTKPSVLLHISSKLPASQGCCTWVMP 243

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP-IKEVHLNKCP 301
           VA HP   ++ I  +LS D+    +    ++ + L+   D     +  P +K +H+N+ P
Sbjct: 244 VAKHPTNNNAFIAIDLSHDIDSLVNDTPEEIRQALYAPSDTFDDALERPGLKLIHVNRSP 303

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +       +++  R G+D +RCL+N  +L     L  +   +Y+    S   D+D  LY
Sbjct: 304 FITTAKAMTEDNAARLGLDRERCLDNYKVLASMPELATKIVDVYDDDIQSGELDIDHALY 363

Query: 362 DGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
            G F  D DR+  +R++   P+ L+TL+       L +  FRYRARN+P+TL+  E   W
Sbjct: 364 SGGFLNDEDRRWCERVIEAQPDDLATLSEKTQHEGLRKQLFRYRARNYPNTLTADEMTRW 423

Query: 421 LEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
             HR+  LT S       +E Y  +L+SL+ E+  +  K+ ++ ALY+Y + +
Sbjct: 424 QHHRQARLTDSAFHGSITLENYMMRLESLAHEHSDNPEKQAILRALYQYAENL 476


>gi|161378162|ref|NP_299304.2| exonuclease I [Xylella fastidiosa 9a5c]
          Length = 478

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 181/474 (38%), Positives = 265/474 (55%), Gaps = 7/474 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M  +F+ YD ETFG+D    R AQFA VR D +   IE    F  KPADD LP P+A  I
Sbjct: 1   MPPNFLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ A R+G+ EA     I    + P+TC +GYN +RFDD + R   +R+FYD Y  
Sbjct: 61  TGITPQHAQREGINEAAAFTHIAMQMTRPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWDLLD++R ++A  P+GI WP+R+DGA SFKL+ LALAN      AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGAAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+++    R  +P+L+ Y    R+K     L+DI ++ P++H+S  + A++   A +
Sbjct: 181 VYATISMARKFRTAQPRLWNYALQLRDKRFCATLLDITSIQPVLHISQRYPATQHCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HP   + +I  +L+GD+     L +  +A RL+T   +L +G   +P+KEVHLNK
Sbjct: 241 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADRLYTPTVDLPEGEQRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
            P L+  +  +   F R G+D          LR                  +++ D D+ 
Sbjct: 301 VPALIAWNNLRASDFTRLGLDADMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADAS 360

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF  + DR+ + ++  + P+ L+T      D RL EL FRYRARNFP TLS  E+  
Sbjct: 361 LYDGFLTEEDRRRLPQLRASPPDTLATFEQHLRDPRLIELLFRYRARNFPETLSCDEQTR 420

Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W  +R+  LT         +++Y  ++  L   +  D  K+ L++ L  +   +
Sbjct: 421 WDTYRRHRLTTDAGLSELTLDQYHAQIAELRMTHSEDVAKQLLLDQLASWGSEL 474


>gi|9107140|gb|AAF84824.1|AE004021_1 exodeoxyribonuclease I [Xylella fastidiosa 9a5c]
          Length = 494

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 181/474 (38%), Positives = 265/474 (55%), Gaps = 7/474 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M  +F+ YD ETFG+D    R AQFA VR D +   IE    F  KPADD LP P+A  I
Sbjct: 17  MPPNFLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLI 76

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ A R+G+ EA     I    + P+TC +GYN +RFDD + R   +R+FYD Y  
Sbjct: 77  TGITPQHAQREGINEAAAFTHIAMQMTRPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 136

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWDLLD++R ++A  P+GI WP+R+DGA SFKL+ LALAN      AH+A +D
Sbjct: 137 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGAAHEALSD 196

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+++    R  +P+L+ Y    R+K     L+DI ++ P++H+S  + A++   A +
Sbjct: 197 VYATISMARKFRTAQPRLWNYALQLRDKRFCATLLDITSIQPVLHISQRYPATQHCAAAV 256

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HP   + +I  +L+GD+     L +  +A RL+T   +L +G   +P+KEVHLNK
Sbjct: 257 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADRLYTPTVDLPEGEQRIPLKEVHLNK 316

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
            P L+  +  +   F R G+D          LR                  +++ D D+ 
Sbjct: 317 VPALIAWNNLRASDFTRLGLDADMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADAS 376

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF  + DR+ + ++  + P+ L+T      D RL EL FRYRARNFP TLS  E+  
Sbjct: 377 LYDGFLTEEDRRRLPQLRASPPDTLATFEQHLRDPRLIELLFRYRARNFPETLSCDEQTR 436

Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W  +R+  LT         +++Y  ++  L   +  D  K+ L++ L  +   +
Sbjct: 437 WDTYRRHRLTTDAGLSELTLDQYHAQIAELRMTHSEDVAKQLLLDQLASWGSEL 490


>gi|329907300|ref|ZP_08274615.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480]
 gi|327547025|gb|EGF31914.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480]
          Length = 477

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 181/475 (38%), Positives = 274/475 (57%), Gaps = 10/475 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ F+ +DYETFG +   DRPAQFA +R D +  +I    + +C+PA+DYLPDP++  IT
Sbjct: 3   SHTFLWHDYETFGVNTRSDRPAQFAAIRTDAELNEIGDEIMLYCQPANDYLPDPQSCLIT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ  L+ G+ E +F+  I   FS   T  +GYN IRFDD  +R +F+RN  D Y   
Sbjct: 63  GITPQVCLQRGLPEYQFAAAIEAAFSASGTVGVGYNTIRFDDEITRFLFWRNLIDPYARE 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N   RWDL+DV+R  YA  P+GI WP  D+G  SF+L+ L  ANGI H  AHDA +DV
Sbjct: 123 WQNQCGRWDLMDVVRMTYALRPEGIHWPMNDEGKPSFRLELLTKANGIAHAAAHDALSDV 182

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  LIR ++PKLF++ +    K+++   I +    P +HVSGMF A R    ++ 
Sbjct: 183 RATIALARLIRTQQPKLFDFCFALHKKDRVSAEIGLPARKPFLHVSGMFPAERGCLGVMW 242

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+A +P  K+ VI  +LS D      LD+  +  R+FT   +L +G+  +PIK +HLNK 
Sbjct: 243 PLATYPTNKNEVIAWDLSHDPSELATLDADTIRLRMFTRSADLPEGVTRLPIKTIHLNKS 302

Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           P+++  +        E+W ID ++   + T+     ++   ++ ++ +P  ++   VD  
Sbjct: 303 PMVVGNLKTLSPAMAEKWQIDLEQAHRHATIAATLVDMDALWQQVFQRPAQATPD-VDED 361

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LY+GF  + DR+ +  +   +P  L+  +  F D RL EL FRYRARNFP TL   E + 
Sbjct: 362 LYNGFVGNGDRRKLTELRALSPTALAKTHPGFDDVRLEELLFRYRARNFPDTLDAAEAER 421

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           W +HR   L         ++    ++  LS +   D   E ++ ALY+Y++ + P
Sbjct: 422 WEQHRSDRLFEGSAGARTVDILFGEIDQLSEQA--DTRGEEILGALYDYVEMIAP 474


>gi|85711607|ref|ZP_01042664.1| Exonuclease I [Idiomarina baltica OS145]
 gi|85694467|gb|EAQ32408.1| Exonuclease I [Idiomarina baltica OS145]
          Length = 486

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 201/476 (42%), Positives = 283/476 (59%), Gaps = 10/476 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  +DYET+G    +DRPAQFAG+R    ++ +      + +P  D+LPDPEAV IT
Sbjct: 11  QPTFYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPDPEAVLIT 70

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  GV EA F++ I Q  S PNT IIGYNNIRFDD  +R++ YRNFYD Y  +
Sbjct: 71  GITPQYALNQGVNEANFAQAIVQEMSQPNTIIIGYNNIRFDDEVTRSLCYRNFYDPYAHT 130

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDL+DV+RA YA  P+GI WP  +DG  + +L+ L  AN I+H  AHDA +DV
Sbjct: 131 WQNGNSRWDLIDVVRACYALRPEGIHWPEDEDGRVTLRLEKLTQANRIDHGQAHDAMSDV 190

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+A+  L+ EK+PKL+++   +R+KN L  LI+ Q + PLVHVSG++GA     + + 
Sbjct: 191 RATIAMAQLLAEKQPKLWQFALQHRHKNDLMNLINWQQIKPLVHVSGLYGADNFFVSAVL 250

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD--ELKGLVPVPIKEVHLNK 299
           P+ +H +  +++I  +L  +   F D  + QL   LF S    E  G       ++ LN+
Sbjct: 251 PIGFHAQRANALIAWDLRINPADFADYSTEQLRDLLFASRQQHETNGTQRPGATQITLNR 310

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN---KPYTSSSQDV 356
           CP L P+     E  +R  ID     E    L + ++ RDR  AI++   +       DV
Sbjct: 311 CPFLAPLATLTAEAQQRTQIDLATLRERTRWLAENSDFRDRIMAIFDSALEHGEQPPLDV 370

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D +LYDGFF   D+Q +  I    PEQL+ + L   D RLPEL FRYRARN+P TL + E
Sbjct: 371 DQRLYDGFFDAQDKQNLQMIRAMRPEQLAGIELNTQDNRLPELLFRYRARNYPATLDQSE 430

Query: 417 KQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            Q W +  ++ LT        I E+  KL+ L+ +Y+ ++ +  L+ +LY+Y Q +
Sbjct: 431 LQRWQQFCRQRLTEPTNGQLSITEFAEKLEGLAQQYQDNKHRMQLLKSLYDYAQGL 486


>gi|238898974|ref|YP_002924656.1| exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466734|gb|ACQ68508.1| exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 490

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 240/465 (51%), Positives = 319/465 (68%), Gaps = 2/465 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYETFG+   LDRPAQFAG+R D ++  +E   V +C PA DYLPDPEAV ITGI
Sbjct: 6   TFYIYDYETFGQHPGLDRPAQFAGIRTDLEFHPVEDPLVLYCSPAQDYLPDPEAVMITGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQKAL +GV EA F+ +IH+  S PNTCI+GYNNIRFDD +SR+IFYRNFYD Y +SW 
Sbjct: 66  TPQKALSEGVNEARFAHQIHRVLSQPNTCILGYNNIRFDDEFSRHIFYRNFYDPYAYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD+ RA YA  P+GI WP  + G  SFKL+ L  AN I+H  AHDA +DVYA
Sbjct: 126 NGNSRWDLLDLTRACYALRPEGIIWPKNEQGLPSFKLEHLTKANSIKHTQAHDALSDVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+AL  L++  +P+LF Y Y +R+K+++  LI I +M PLVHVSGMF   + +T+ I P+
Sbjct: 186 TMALAKLLKSAQPRLFHYFYAHRSKHKINTLIHIGDMAPLVHVSGMFSPEKGHTSWILPI 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPI 302
           AWHP  +++VI C+L+GD+     L +  L +RL+T  D+L      VP+K VH+NKCPI
Sbjct: 246 AWHPDNQNAVIVCDLAGDITPLLSLKADMLRERLYTPRDQLGSECAQVPLKLVHINKCPI 305

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
           L P     +E+ +R GID + CL+NL LLR+  ++R++  AI++ +       +VD+QLY
Sbjct: 306 LAPAKTLSRENAQRLGIDQQHCLKNLELLRRYPDIREKMVAIFDGQKPFPKVNNVDAQLY 365

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           DGFF D DR  +  I +T PE L TL + F D RL  LFFR+RARN+P TLSEK++Q W 
Sbjct: 366 DGFFNDFDRAEISTIQKTLPENLPTLKIVFQDPRLETLFFRFRARNYPETLSEKDQQRWK 425

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
            H   +L+   I+EY  KL+ +  EY+ +  K+ LI+ L +Y   
Sbjct: 426 AHFNTVLSPGIIKEYLLKLKEMLLEYEDNPEKQTLIHLLIQYANQ 470


>gi|251792518|ref|YP_003007244.1| exonuclease I [Aggregatibacter aphrophilus NJ8700]
 gi|247533911|gb|ACS97157.1| exodeoxyribonuclease I [Aggregatibacter aphrophilus NJ8700]
          Length = 464

 Score =  356 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 207/460 (45%), Positives = 299/460 (65%), Gaps = 4/460 (0%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDG 72
           FG + A DRPAQF G+R D  +  I  + V +CK  +DYLP PEAV +TGITPQ+    G
Sbjct: 6   FGVNPATDRPAQFGGIRTDANFNIIGESVVLYCKQTNDYLPAPEAVLVTGITPQECNEKG 65

Query: 73  VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLL 132
           + E +F+ RI Q FS PNTC++G+NNIR+DD  +R  FYRNF D Y +SW NGNSRWDLL
Sbjct: 66  LPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLL 125

Query: 133 DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIR 192
           D++RA YA  PDG++WP  D+G  SF+L+ L  ANGIEH NAHDA +DVYAT+ +  LI+
Sbjct: 126 DLVRACYALRPDGVEWPLDDEGMPSFRLEKLTEANGIEHTNAHDAMSDVYATIEMAKLIK 185

Query: 193 EKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDS 252
           +K+PKLF+Y ++ R K ++ KLI+   MTPLVHVSGM G  R NT LIAP+AWHP  K++
Sbjct: 186 QKQPKLFQYFFENRGKKEIEKLINTAEMTPLVHVSGMLGNYRGNTTLIAPLAWHPTNKNA 245

Query: 253 VIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPILMPIDYCK 310
           VI C+L+ ++       + +L + L+T  + L   G++ VP+K +H+NKCPI+ P     
Sbjct: 246 VIVCDLTANIDDLLTKSAEELRENLYTKKETLLEAGVLLVPLKLIHINKCPIVAPEKTLL 305

Query: 311 KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLYDGFFADVD 369
            ++ ER GID + C +N   L    ++R +   I+ +     +S +V+++LY+GFF+D D
Sbjct: 306 SQNAERLGIDRELCAQNQQRLLASKDIRQKVMDIFQQDREFEASDNVETELYNGFFSDAD 365

Query: 370 RQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLT 429
           +  M  +    PE+L+  NL F D R+P+L F YRAR+F  TL+  E+  W ++ +K L 
Sbjct: 366 KNNMAILRTLEPEKLAEHNLRFQDPRIPQLLFHYRARHFYRTLNRAEQIKWQKYCRKKL- 424

Query: 430 RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
            + I  ++  LQ L+ + + +E    L+  +YEY   +I 
Sbjct: 425 DAEILRFEQSLQELAAQNEHNEENLTLLQKVYEYGNKIIS 464


>gi|161484692|ref|NP_779012.2| exonuclease I [Xylella fastidiosa Temecula1]
 gi|182681388|ref|YP_001829548.1| exonuclease I [Xylella fastidiosa M23]
 gi|182631498|gb|ACB92274.1| Exodeoxyribonuclease I [Xylella fastidiosa M23]
 gi|307579833|gb|ADN63802.1| exonuclease I [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 478

 Score =  356 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 181/474 (38%), Positives = 264/474 (55%), Gaps = 7/474 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F+ YD ETFG+D    R AQFA VR D Q   IE    F  KPADD LP P A  I
Sbjct: 1   MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ A R+G+ EA     I    + P+TC +GYN +RFDD + R   +R+FYD Y  
Sbjct: 61  TGITPQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWDLLD++R ++A  P+GI WP+R+DGA SFKL+ LALAN      AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+++    R  +P+L+ Y    R+K     L+DI ++ P++H+S  + A++   A +
Sbjct: 181 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HP   + +I  +L+GD+     L +  +A  L+T   +L +G   +P+KEVHLNK
Sbjct: 241 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
            P L+  ++ +   F R G+D          LR                  +++ D D+ 
Sbjct: 301 VPALIAWNHLRASDFTRLGMDPSMLETKAAQLRACGPDLAEKVRNVFSHTYNTANDADAS 360

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF  + DR+++ ++  ++P+ L T      D RL EL FRYRARNFP TLS  E+  
Sbjct: 361 LYDGFLTEEDRRLLPQLRASSPDTLVTFEQRLRDPRLIELLFRYRARNFPETLSCDEQTR 420

Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W  +R++ LT          ++Y  ++  L   +  D  K+ L++ L  +   +
Sbjct: 421 WDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSEL 474


>gi|121607268|ref|YP_995075.1| exonuclease I [Verminephrobacter eiseniae EF01-2]
 gi|121551908|gb|ABM56057.1| Exodeoxyribonuclease I subunit C [Verminephrobacter eiseniae
           EF01-2]
          Length = 481

 Score =  356 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 179/481 (37%), Positives = 266/481 (55%), Gaps = 15/481 (3%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + F+ +DYETFG D   DRPAQFA +R D +   I    +  C+PA+DYLPDP +  +TG
Sbjct: 4   HTFLWHDYETFGTDTRCDRPAQFAAIRTDAELHAIGEPLMLHCQPANDYLPDPASCLLTG 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ     G+ E +F+ RI    + P T  +GYN +RFDD  +R +F+RN  D Y   W
Sbjct: 64  ITPQHCCAHGLPEHQFAARIEAELARPGTIGVGYNTLRFDDEITRFMFWRNLIDPYAREW 123

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD-GATSFKLQDLALANGIEHVNAHDAKADV 181
            N   RWDLLDV+R  YA  PDGI WP  +D  A SF+L+DL  ANG+ H  AHDA +DV
Sbjct: 124 KNQCGRWDLLDVVRMTYALRPDGIHWPRHEDGAAPSFRLEDLCRANGLLHEAAHDALSDV 183

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ----NMTPLVHVSGMFGASRSNT 237
            AT+AL  LIR+    LF++      K+++   + +        P +HVSGMF A R   
Sbjct: 184 RATIALARLIRQHNRPLFDFALGLHKKDRVAAELRLSGGAGTARPFLHVSGMFPAERGCL 243

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296
           A++ P+A HP  K+ +I  +L+ D      L   ++  R+FT  D L +G+  +P+K +H
Sbjct: 244 AVMWPLAGHPVNKNELIAWDLAHDPAALATLGVDEMRLRMFTRTDALPEGVTRLPVKTIH 303

Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           LN+ P+++  ++        RWGID  +  ++    R   ++   + A++ +P   +   
Sbjct: 304 LNRSPMVVGNVNTLTPALARRWGIDLAQAAQHAQAARALPDMGRVWAAVFARPSEPAPD- 362

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           VD  LY GF  D DR+++D +  +A        + F D RL ELF+RYRARNFP TL+ +
Sbjct: 363 VDQDLYCGFVGDRDRRLLDDLRASAAGMNGKARVHFDDPRLVELFWRYRARNFPATLAPE 422

Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
           E   W  H    L         + ++  ++  LS     DE  +G++ ALY+Y + + P+
Sbjct: 423 EAGRWQAHCAARLFHGAGGARTVGQFHARIDELSE--TADERGQGILGALYDYAEQIAPE 480

Query: 471 E 471
            
Sbjct: 481 H 481


>gi|28056789|gb|AAO28661.1| exodeoxyribonuclease I [Xylella fastidiosa Temecula1]
          Length = 494

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 181/474 (38%), Positives = 264/474 (55%), Gaps = 7/474 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F+ YD ETFG+D    R AQFA VR D Q   IE    F  KPADD LP P A  I
Sbjct: 17  MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 76

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ A R+G+ EA     I    + P+TC +GYN +RFDD + R   +R+FYD Y  
Sbjct: 77  TGITPQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 136

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWDLLD++R ++A  P+GI WP+R+DGA SFKL+ LALAN      AH+A +D
Sbjct: 137 EWRNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 196

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+++    R  +P+L+ Y    R+K     L+DI ++ P++H+S  + A++   A +
Sbjct: 197 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 256

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HP   + +I  +L+GD+     L +  +A  L+T   +L +G   +P+KEVHLNK
Sbjct: 257 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 316

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
            P L+  ++ +   F R G+D          LR                  +++ D D+ 
Sbjct: 317 VPALIAWNHLRASDFTRLGMDPSMLETKAAQLRACGPDLAEKVRNVFSHTYNTANDADAS 376

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF  + DR+++ ++  ++P+ L T      D RL EL FRYRARNFP TLS  E+  
Sbjct: 377 LYDGFLTEEDRRLLPQLRASSPDTLVTFEQRLRDPRLIELLFRYRARNFPETLSCDEQTR 436

Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W  +R++ LT          ++Y  ++  L   +  D  K+ L++ L  +   +
Sbjct: 437 WDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSEL 490


>gi|33152477|ref|NP_873830.1| exonuclease I [Haemophilus ducreyi 35000HP]
 gi|33148700|gb|AAP96219.1| exonuclease I [Haemophilus ducreyi 35000HP]
          Length = 513

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 210/467 (44%), Positives = 292/467 (62%), Gaps = 4/467 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F  YDYE+FG + A DRPAQFAG+R DR++  I    +F+CK  +DYLP  EAV +TGI
Sbjct: 6   TFFFYDYESFGINPATDRPAQFAGIRTDREFNIIGEPVMFYCKQTNDYLPSAEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            PQ     G+ E EF++RIH  FS PNTCIIGYNNIR+DD  +R  F+RNFYD Y + W 
Sbjct: 66  APQLCNEKGLSEPEFAQRIHHEFSQPNTCIIGYNNIRYDDEMTRYTFFRNFYDPYEYCWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P GI+WP  +    SFKL+ L  AN I H NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPSGIEWPKNEKDEPSFKLEHLTKANAIAHQNAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+ +  LI++K+ KLF++ ++ R+K  L KLID   +TPLVHVSGM G  R NTALI P+
Sbjct: 186 TIEIAKLIKQKQRKLFDFFFENRSKKALEKLIDPAELTPLVHVSGMLGNYRGNTALIVPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
           AWHP  +++V+ C+LS D++   +  +  L +RL+T  D L +   PVP+K VHLNKCPI
Sbjct: 246 AWHPTNQNAVVVCDLSSDIQGLLNDTAEVLKQRLYTKRDALAEHESPVPLKLVHLNKCPI 305

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT--NLRDRFKAIYNKPYTSSSQDVDSQL 360
           L P      E+  R  ID  +CL NL  L+ Q         +   ++   + S +V++ L
Sbjct: 306 LAPAKTLLAENAMRLAIDRSQCLLNLAKLQAQKAVVREKVIEIFNDERIFAPSNNVETTL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YD FF++ D+  +  +    PEQL+   L F+D+R+  L F YRAR+FP+TL+  E+  W
Sbjct: 366 YDSFFSNGDKNNLAILRTLKPEQLAEHGLKFADKRVEPLLFHYRARHFPNTLTRAEQIKW 425

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            ++  + +  ++ E++  ++ +L   Y     K  L+  L  Y   +
Sbjct: 426 QKYCHQQI-DAKTEQFSQEIANLFERYADHADKVKLLEDLTAYATQL 471


>gi|71275767|ref|ZP_00652051.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon]
 gi|71902145|ref|ZP_00684172.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
 gi|170730127|ref|YP_001775560.1| exonuclease I [Xylella fastidiosa M12]
 gi|71163345|gb|EAO13063.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon]
 gi|71728093|gb|EAO30295.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
 gi|167964920|gb|ACA11930.1| Exodeoxyribonuclease I [Xylella fastidiosa M12]
          Length = 488

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 178/474 (37%), Positives = 262/474 (55%), Gaps = 7/474 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F+ YD ETFG+D    R AQFA VR D Q   IE    F  KPADD LP P A  I
Sbjct: 11  MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ A R+G+ E      I    + P+TC +GYN +RFDD + R   +R+FYD Y  
Sbjct: 71  TGITPQHAQREGISEVAAFAHITMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 130

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWDLLD++R ++A  P+GI WP+R+DGA SFKL+ LALAN      AH+A +D
Sbjct: 131 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 190

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+++    R  +P+L+ Y    R+K     L+DI ++ P++H+S  + A++   A +
Sbjct: 191 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 250

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HP   + +I  +L+GD+     L +  +A  L+T   +L +G   +P+KEVHLNK
Sbjct: 251 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 310

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
            P L+  ++ +   F R G++          LR                  +++ D D+ 
Sbjct: 311 VPALIAWNHLRASDFTRLGLNPAMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADAS 370

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF  + DR+++ ++  +  + L+T      D RL EL FRYRARNFP TLS  E+  
Sbjct: 371 LYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIELLFRYRARNFPETLSCDEQTR 430

Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W  +R++ LT          ++Y  ++  L   +  D  K+ L++ L  +   +
Sbjct: 431 WDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSEL 484


>gi|71897974|ref|ZP_00680179.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
 gi|71732218|gb|EAO34273.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
          Length = 488

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 180/474 (37%), Positives = 263/474 (55%), Gaps = 7/474 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F+ YD ETFG+D    R AQFA VR D Q   IE    F  KPADD LP P A  I
Sbjct: 11  MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ A R+G+ EA     I    + P+TC +GYN +RFDD + R   +R+FYD Y  
Sbjct: 71  TGITPQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 130

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWDLLD++R ++A  P+GI WP+R+DGA SFKL+ LALAN      AH+A +D
Sbjct: 131 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 190

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+++    R  +P+L+ Y    R+K     L+DI ++ P++H+S  + A++   A +
Sbjct: 191 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 250

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+  HP   + +I  +L+GD+     L +  +A  L+T   +L +G   +P+KEVHLNK
Sbjct: 251 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 310

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
            P L+  ++ +   F R G+D          LR                  +++ D D+ 
Sbjct: 311 VPALIAWNHLRASDFTRLGLDPSMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADAS 370

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF  + DR+++ ++  +  + L+T      D RL EL FRYRARNFP TLS  E+  
Sbjct: 371 LYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIELLFRYRARNFPETLSCDEQTR 430

Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W  +R++ LT          ++Y  ++  L   +  D  K+ L++ L  +   +
Sbjct: 431 WDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSEL 484


>gi|146281544|ref|YP_001171697.1| exonuclease I [Pseudomonas stutzeri A1501]
 gi|145569749|gb|ABP78855.1| exodeoxyribonuclease I [Pseudomonas stutzeri A1501]
          Length = 477

 Score =  354 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 185/450 (41%), Positives = 271/450 (60%), Gaps = 11/450 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT     YD+ET G   + DRP Q AG+R +   E+I      +C+P DD LP P A  +
Sbjct: 1   MTPSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP    + G+ EA+F   +H+  S P TC  GYN++RFDD  +R   YRNFYD Y  
Sbjct: 61  TGITPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+D++R  YA  P+GI WP   DG  + KL+ L+ ANG+EH+NAHDA +D
Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIGWPED-DGRVTLKLERLSAANGLEHLNAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT++L  LIRE++P+L+EYL++ R K+ + + + +  + PLVHVSG F A+R   +++
Sbjct: 180 VRATISLARLIRERQPRLYEYLFNLRRKHAVLEQVTL--LEPLVHVSGRFSAARHFLSVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHPR ++++I C+L  ++R      +  L +RL+T  DEL +G +PVP+K VH+NK
Sbjct: 238 LPLAWHPRNRNALIVCDLQAEVRPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINK 297

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
           CP+L P+   ++   +R  +D   C E    LR+Q +    +   +Y +       D + 
Sbjct: 298 CPVLAPLKVLREADIQRLELDLPACHERADALREQRHVWSPKLDEVYREEGFIGVDDPEQ 357

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           QLYDGF  + DR++ DRI   AP +L+     F D RL EL FRYRARNFP  LS  E+ 
Sbjct: 358 QLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLFRYRARNFPEALSAVERV 417

Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQS 442
            W    ++ L+       + + +++  +Q 
Sbjct: 418 RWQRFCQQRLSGEIAGAPNTLAQFEADIQQ 447


>gi|254517159|ref|ZP_05129217.1| exodeoxyribonuclease I [gamma proteobacterium NOR5-3]
 gi|219674664|gb|EED31032.1| exodeoxyribonuclease I [gamma proteobacterium NOR5-3]
          Length = 482

 Score =  354 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 186/479 (38%), Positives = 271/479 (56%), Gaps = 13/479 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +     +DYETFG D   DRPAQFAG+R D     I    V + KP  DY+P P+A  IT
Sbjct: 4   SETLYWHDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDACLIT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL  GV EA+F + I   F    TC +GYN++RFDD  +R   YRN  D Y   
Sbjct: 64  GITPQAALAAGVPEADFIKAILHEFMQRGTCAVGYNSLRFDDTVTRATLYRNLRDPYARE 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + +G SRWDL+D++R  YA  P+G+ WP RDDG  SF+L+DL  ANG+    AHDA  DV
Sbjct: 124 YGDGRSRWDLIDIVRTAYALRPEGLIWPERDDGLPSFRLEDLCEANGLAQGRAHDALVDV 183

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  L++E++P+LF++LY  R K  ++ L++  +  P++HVSGMFGA R+N  LI 
Sbjct: 184 QATIALARLLKERQPRLFQWLYQQRFKQAVKPLLEPMS-QPVLHVSGMFGAQRANLGLIL 242

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+A H + ++ V+  +LS D  +  DL + +L + LFT++ +L +G     +K VH+N+C
Sbjct: 243 PLAAHHQNRNEVMCADLSIDADLLTDLPAAELHRLLFTANADLAEGEQRPGLKSVHINRC 302

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-----RDRFKAIYNKPYTSSSQD 355
           P+L+P         +R  +D + C  NL  LR          RD+ +++      +   D
Sbjct: 303 PVLLPAKMADAAVTQRADLDLEACRANLQHLRDYEQHMPGALRDKLRSVSELSTRAPETD 362

Query: 356 VDSQLYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
            D  LY G F    DR+ +DRIL  +PE L+   + F D RL E+ FRYRARN+P TLS 
Sbjct: 363 PDRMLYSGGFIPKEDRRTLDRILDLSPEDLADTTVAFDDLRLQEMLFRYRARNYPQTLSA 422

Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           +E+  W E R   ++        +E     ++      +  E    ++  L  +   ++
Sbjct: 423 EEQLRWEEFRFNRISEGDGRSLTLEGLNELIEERLASPQLCERDRQVLEELQRWGDSLL 481


>gi|88707066|ref|ZP_01104762.1| exodeoxyribonuclease I [Congregibacter litoralis KT71]
 gi|88698716|gb|EAQ95839.1| exodeoxyribonuclease I [Congregibacter litoralis KT71]
          Length = 482

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 195/479 (40%), Positives = 279/479 (58%), Gaps = 13/479 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  F  +DYETFG D A DRP+QFAG+R D     I    V + +P  DY+P P+A  IT
Sbjct: 4   SETFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDACLIT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ AL +GVVEA+F   I   F  P TC +GYN++RFDD  +R   YRN  D Y   
Sbjct: 64  GITPQTALAEGVVEAQFMSTILDEFMKPGTCAVGYNSLRFDDTVTRATLYRNLRDPYARE 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + +G SRWDL+DV+R  YA  P+G+ WP+RDDG  SF+L+DL  ANG+E   AHDA  DV
Sbjct: 124 YGDGRSRWDLIDVVRTAYALRPEGLNWPTRDDGLPSFRLEDLCKANGLEQGQAHDALVDV 183

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL   I++K+P+LF++L+  R K  ++ L+D     P++HVSGMFGA R+N  LI 
Sbjct: 184 KATIALARAIKDKQPRLFDWLFRQRFKQAVKPLLDPM-AQPVLHVSGMFGARRANLGLIL 242

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+A H + ++ VI  +LS D  +  DL + +L +RL+TS+ +L +G V   IK VH+N+C
Sbjct: 243 PLAVHYQNRNEVICADLSVDAALIIDLPAEELHRRLYTSNADLGEGEVRPGIKSVHINRC 302

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-----RDRFKAIYNKPYTSSSQD 355
           P+L+P         ER G+D   C  NL  LR          RD+ +A+          D
Sbjct: 303 PVLLPEKMADAAVAERSGLDLAVCHGNLQRLRAYDERMPGALRDKLRAVSELSGREPETD 362

Query: 356 VDSQLYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
            D  LY G F    DR+ +DR+L   PE L+T  + F D RL E+ FRYRARN+P TL++
Sbjct: 363 PDRMLYSGGFIPKEDRRTLDRVLALTPEDLATTTVAFEDTRLEEMLFRYRARNYPETLND 422

Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           +E+  W E+R   ++        +E+    ++      +  +    ++  L  +   ++
Sbjct: 423 EERARWEEYRFARISEGDGRSLNLEDLNGIIEERLIAAQITDRDRHVLEELQRWGDSLL 481


>gi|119505890|ref|ZP_01627954.1| Exonuclease [marine gamma proteobacterium HTCC2080]
 gi|119458271|gb|EAW39382.1| Exonuclease [marine gamma proteobacterium HTCC2080]
          Length = 483

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 184/475 (38%), Positives = 264/475 (55%), Gaps = 10/475 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  F  +DYET G +V  DRP QFAGVR D+ +  I    V +C+P+ D L  P A+ +T
Sbjct: 4   SESFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAIRVT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+P KAL +G  E  F  +I + F VP TC +GYN++RFDD  +R   YRNF+  Y   
Sbjct: 64  GISPYKALAEGANEGAFMAKIQREFMVPGTCALGYNSVRFDDEITRFALYRNFFPPYARE 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +    SRWDL+DV RAIYA  PDGI WP R+DG  SF+L+DL  ANGI+H NAHDA ADV
Sbjct: 124 FGQNRSRWDLIDVARAIYALRPDGIVWPIREDGLPSFRLEDLTAANGIDHGNAHDALADV 183

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  L+ + +P LF+ LY  R K  +  L++  +  P++HVSG FGA R N A++ 
Sbjct: 184 LATIALAKLLSKAQPTLFDTLYAQRGKQAIAPLLNCLDPKPVIHVSGQFGAQRDNLAIVL 243

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+A HP  K+ VI  +L      F D  S  + + LFT   +   G+   P+K + +N+ 
Sbjct: 244 PLAVHPTNKNGVICADLGEAPA-FLDQSSEDVRQLLFTPKADFPAGVQRPPLKMIQINRA 302

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-----LRDRFKAIYNKPYTSSSQD 355
           P+++P  +   E  +R  +D  +   +L   R              + IY     +   D
Sbjct: 303 PVVLPTTWVSGEPAQRLRLDGDQTRASLAAYRVARQVDPKGFTRFIEEIYADRAFAPRSD 362

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
            D+QLY+GF    D  +++ I +  P+ L++    F DRRLPE+FFRYRARNFP +L   
Sbjct: 363 PDTQLYEGFLGRHDEALLETIRQATPDSLASHTWTFEDRRLPEVFFRYRARNFPESLDPD 422

Query: 416 EKQDWLEHRKKMLT---RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           EK  W EH ++ LT       E +  +L            +   ++ L +Y + +
Sbjct: 423 EKARWREHCRETLTGKAGPDWEGFSKQLNEERAREGLSVMQIAALDDLEQYTREL 477


>gi|297183623|gb|ADI19749.1| hypothetical protein [uncultured gamma proteobacterium EB000_37F04]
          Length = 480

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 195/474 (41%), Positives = 263/474 (55%), Gaps = 9/474 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +     +DYET G D   DRP QFAG+R D +   +      + +P +D LP P AV +T
Sbjct: 4   SESLYWHDYETSGADPTQDRPWQFAGIRTDAELNIVGKPLTLYAQPTEDRLPHPAAVRVT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   GV EA F  RI    + PNTC  GYN+IRFDD  +R   +RN  D Y   
Sbjct: 64  GITPQEAYEKGVTEATFISRILAELAKPNTCTAGYNSIRFDDEVTRFTLWRNLRDPYARE 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDV+RA +A SP+G++WP RDDG TSF+L+DL  ANGIEH  AHDA ADV
Sbjct: 124 WQNGNSRWDLLDVVRAFWALSPNGLEWPQRDDGLTSFRLEDLTAANGIEHGAAHDALADV 183

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +   +++   +LF  LY  R+K  +  LIDI  + P+V+VSG+FGA+R N ALI 
Sbjct: 184 IATIEMAKRLKQSDARLFTTLYANRSKRAVSALIDIPRLKPIVYVSGIFGAARHNLALIV 243

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  K  VI  +L+G    + D    +L + LF       KG V  P+  V LN+ 
Sbjct: 244 PLAWHPDNKSEVICADLAGSTE-YLDQPVAELRESLFAPASARSKGAVRPPLTAVRLNRA 302

Query: 301 PILMPIDYCKKEHFERWGIDHK-----RCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           P+L+P D+   E  ER G+D                  +     RF+ ++         D
Sbjct: 303 PVLLPADWLAGEAAERLGLDGDHHRAHLAALRAARAANEAAFVARFQELWRDRAFPPRTD 362

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
            D  LYDGF  D DR +  +IL+  P  L+T + PFSD RLPEL FRYRARNFP +LS  
Sbjct: 363 PDQMLYDGFINDADRALCQQILQQEPATLATQSWPFSDPRLPELLFRYRARNFPDSLSAG 422

Query: 416 EKQDWLEHRKKMLTRSRIEE--YKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           E + W EH +         +  +   L             +  ++AL ++++ +
Sbjct: 423 EGEQWREHCQLQRKEGTFNQATFAQALVEERARADITPATKRALDALEQWVRDL 476


>gi|319944538|ref|ZP_08018809.1| exodeoxyribonuclease I [Lautropia mirabilis ATCC 51599]
 gi|319742251|gb|EFV94667.1| exodeoxyribonuclease I [Lautropia mirabilis ATCC 51599]
          Length = 489

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 181/491 (36%), Positives = 259/491 (52%), Gaps = 25/491 (5%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   F  +DYETFGRD  LDRPAQFAG+R D    ++    + +CKPA DYLPDPEA  
Sbjct: 1   MSETSFFWHDYETFGRDPRLDRPAQFAGIRTDLDLNEVGEPVMLYCKPAPDYLPDPEACL 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI PQ+ L  G+ E  F+  +        T  +GYN+IRFDD  +R++ +R     Y 
Sbjct: 61  LTGILPQECLARGLPEYRFADAVLAELGASGTIGVGYNSIRFDDEVTRHLLWRTLRPPYD 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             W NG SRWDLLDV+RA  A  P+GI+WP  DDG  SFKL+ L+ ANG+ H  AHDA +
Sbjct: 121 REWRNGCSRWDLLDVVRATAALRPEGIEWPRHDDGRPSFKLEHLSAANGLAHAQAHDALS 180

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DV AT+AL  LIR ++P+L+ +    R K  +   I      P +HVS M+GA R   A+
Sbjct: 181 DVRATIALAALIRNRQPRLWNFCLALRQKQAVLTEIGSD--RPFIHVSAMYGAERGGMAV 238

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
           + P+A HP  ++ +I  +L  D     DLD+ Q+  RLF+  ++L +G+  +PI+ + +N
Sbjct: 239 VWPLAQHPTNRNELIVWDLIHDPAELADLDAEQIRLRLFSKTEDLPEGMTRLPIRSLAIN 298

Query: 299 KCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS--SSQD 355
           K PI++  +        ERW ID +    +    R+ T           +       + D
Sbjct: 299 KSPIVIGNLKVLTPAVIERWHIDMETIARHTETARRLTPQLASRMDEVYQRPRPQGPAPD 358

Query: 356 VDSQLYDGFFADVDRQIMDRILRT------------APEQLSTLNLPFSDRRLPELFFRY 403
           VD  LY GF  + DR+ +D                   +        F D RL E+ FRY
Sbjct: 359 VDGDLYGGFIGNDDRRRLDDWRERLDATASQAAASPDADHSHIQIPSFEDPRLEEMSFRY 418

Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYK-GDEGKEGLI 457
           RAR FP  LS +EKQ W+ H    L +       +  + ++L  L+      DE  + L+
Sbjct: 419 RARQFPDMLSTEEKQRWVAHCHARLHQGAGNAMTLATFAHRLDELNQSLSPDDEHGQRLL 478

Query: 458 NALYEYLQWVI 468
            ALY+Y + + 
Sbjct: 479 EALYDYGEQLA 489


>gi|332993520|gb|AEF03575.1| exodeoxyribonuclease I [Alteromonas sp. SN2]
          Length = 477

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 187/474 (39%), Positives = 272/474 (57%), Gaps = 9/474 (1%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+ YD+ETFG     D P QFA +R D  +  I          A+DYLP PEA  +TG
Sbjct: 4   PSFLWYDFETFGTSGQKDLPCQFAAIRTDLDFNIIGKPINIMSAIANDYLPHPEACLVTG 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITPQ+ LRDG  EA+F++RI+Q  S PNTC +G+N+IRFDD  +R +FYRNFYD Y   W
Sbjct: 64  ITPQQTLRDGSNEADFAKRIYQEMSTPNTCSLGFNSIRFDDEVARFLFYRNFYDPYSREW 123

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGNSRWD++D+ RA YA  PDGI WP+R+DG  SFKL+ L   N I H NAHDA +DV+
Sbjct: 124 RNGNSRWDIIDLARACYALRPDGINWPTREDGTPSFKLEHLTKENDISHENAHDALSDVH 183

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+AL  LI+EK+P+LFEY Y  R+K+ +    D+   + L+H+S    AS+     I P
Sbjct: 184 ATIALAKLIKEKQPRLFEYAYSLRSKHNVANQFDLTKPSVLLHISAKLPASQGCCTWIMP 243

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG--LVPVPIKEVHLNKC 300
           +A HP   +++I  +LS  +    +    ++  +L+  ++       +   +K +H+N+ 
Sbjct: 244 IAKHPTNSNAIIAVDLSKPIDSLLNDSPEEIKAKLYARYEPGSDANSLRPGLKLIHINRS 303

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P +       +++  R G+D   CLEN  +L Q+ +L  +   +Y        QD+D  L
Sbjct: 304 PFVTTAKAMTEDNAHRLGLDRDTCLENYRILAQERDLGMKLSNVYENDTDDKEQDIDHAL 363

Query: 361 YDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           Y G F +  DR   D++L ++PEQL  L        L  L FRYRARNFP TL+  E   
Sbjct: 364 YSGGFLSTEDRHWCDKVLASSPEQLGALAEETQHVGLRALLFRYRARNFPSTLTYDETLK 423

Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           W  HR+  LT         +E Y + L+ L+ E+  +  K+ ++ AL++Y + +
Sbjct: 424 WQRHRQARLTDPTSSASITLEHYMSTLERLAHEHVDNPEKQAILRALFQYAENL 477


>gi|300312923|ref|YP_003777015.1| exodeoxyribonuclease I [Herbaspirillum seropedicae SmR1]
 gi|300075708|gb|ADJ65107.1| exodeoxyribonuclease I (3'-> 5' specific) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 467

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 181/428 (42%), Positives = 251/428 (58%), Gaps = 4/428 (0%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+N  F+ +DYETFG     DRPAQFA VR D +  +I +  + +CKPA DYLPDP +  
Sbjct: 1   MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           ITGITPQ  L  G+ E EF+ RI Q    P T  +GYN IRFDD  +R +F+RN  D Y 
Sbjct: 61  ITGITPQHCLAHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             W NG  RWDLLDV+R  YA  P GIQWP +DDG+ SFKL+ L+ ANG+ H  AHDA +
Sbjct: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DV AT+AL  LIR+  P+LF++      K++    I +    P +H SGMF  +    AL
Sbjct: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL 240

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
           + P+  HP  K+ VI  +L  D      LD+  + +RLF+  D+L +G+  +P+K +HLN
Sbjct: 241 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN 300

Query: 299 KCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           K P+++  +     E      ID +  L +        +L   +  +Y    +    DVD
Sbjct: 301 KSPMVVGSLKTLSAERAAELDIDVEAALRHADKAAALPDLTRLWSEVYQ-RESEGPADVD 359

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
             LY GF  + DR+ ++++   +P+ L+T ++ F D RL E+ FRYRAR+FP TLS +E 
Sbjct: 360 EDLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEA 419

Query: 418 QDWLEHRK 425
           Q W EHR 
Sbjct: 420 QHWEEHRA 427


>gi|145636088|ref|ZP_01791758.1| exonuclease I [Haemophilus influenzae PittHH]
 gi|145270610|gb|EDK10543.1| exonuclease I [Haemophilus influenzae PittHH]
          Length = 440

 Score =  346 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 209/428 (48%), Positives = 284/428 (66%), Gaps = 3/428 (0%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI+EK+PKLF+Y ++ R K ++ KL+D   MTPLVHVSGM G  R N   +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
           AWHP  ++++I C+L+GD+       + +L   L+T   EL+  G+  VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
           IL P      E   R GID + CL+NL  LR   ++R++   I+N+    +S+ +V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+  E+  W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425

Query: 421 LEHRKKML 428
            ++R+  L
Sbjct: 426 KKYRQNKL 433


>gi|254524666|ref|ZP_05136721.1| exodeoxyribonuclease I [Stenotrophomonas sp. SKA14]
 gi|219722257|gb|EED40782.1| exodeoxyribonuclease I [Stenotrophomonas sp. SKA14]
          Length = 479

 Score =  346 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 195/475 (41%), Positives = 295/475 (62%), Gaps = 8/475 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+ YD ETFG+D    R +Q+A +R D    +IE+   FF +PADD LP P A  +
Sbjct: 1   MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIETPVSFFVRPADDLLPSPMATLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQ+A+ +G+ EAE   RI++  S P TC +GYN +RFDD + R   +RNF+D Y  
Sbjct: 61  TGITPQQAMAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFIRYGLFRNFHDPYER 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W NGNSRWDLLD++R + A  PDGIQWP R+DGATSFKL+ LA AN +   +AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+ +  L ++ +P+L+EY    R+K  +  L+DI  + P++HVS  + ASR   A +
Sbjct: 181 VRATIGMARLFKQSQPRLWEYALKLRDKRFVGGLLDIAALKPVLHVSMRYPASRLCAAPV 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+A HP   + VI  +L GD+    +L +  +A+RL+    EL +G+  VP+KEVH+NK
Sbjct: 241 LPLAVHPTINNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHMNK 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
            P L+  ++ + +  ER G+D       +  LR     L ++ + +YN+P T+++ DVD+
Sbjct: 301 VPALIAWNHLRADDHERLGLDVAAIEAKVERLRPFAAQLAEKARQVYNQPRTATAADVDA 360

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
            LYDGF  + D+ ++     TAPEQL+ L   F D RLPEL FRYRARN P +L+  E+Q
Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPGSLAPAERQ 420

Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            W ++R++       L    + +Y+ +L +L+ +   D  ++ L+ +L ++ Q +
Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAADAPDDARRQALLQSLRDWGQHL 475


>gi|269962181|ref|ZP_06176534.1| exodeoxyribonuclease I [Vibrio harveyi 1DA3]
 gi|269833012|gb|EEZ87118.1| exodeoxyribonuclease I [Vibrio harveyi 1DA3]
          Length = 427

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 210/428 (49%), Positives = 291/428 (67%), Gaps = 2/428 (0%)

Query: 43  FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
            +C+P  DYLP PEA  ITGITPQKA+++G+ E EF  +IH   S PNT  +GYN+IRFD
Sbjct: 1   MYCRPPADYLPSPEAALITGITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFD 60

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
           D  +R   YRNF D Y WSW NGNSRWDLLDVMRA +A  P+G++WP  D+G TSFKL+ 
Sbjct: 61  DEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEH 120

Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
           L++ANGIEH NAHDA ADV AT+ +   ++  +PKLF+Y Y  RNK +L +L+DI NMTP
Sbjct: 121 LSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFYSMRNKRKLNELVDIVNMTP 180

Query: 223 LVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD 282
           L+HVSGM G     T+ I PVAWHP   ++VI  +L+ D +   +L + +L +RL+T  +
Sbjct: 181 LMHVSGMMGRECQYTSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRE 240

Query: 283 ELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK 342
           EL  L+PVP+K VHLNKCPIL P      E+ E  GID ++CL NL LLRQ   +R++  
Sbjct: 241 ELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEVIGIDRQKCLSNLALLRQHPEIREKLI 300

Query: 343 AIYN-KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
           ++++ +     S DVD+QLYDGFF+  DR  MD I  T P  L+ L++ F D+R+  L F
Sbjct: 301 SLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLF 360

Query: 402 RYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461
           RYRAR++  TL E+E++ W +H ++ +  S+IEEY   L++L  E++ DE K  ++ ++Y
Sbjct: 361 RYRARHYAGTLDEQEQRRWAQHCRE-VFESQIEEYMLNLENLVHEHESDEKKIAILKSVY 419

Query: 462 EYLQWVIP 469
            Y++ +  
Sbjct: 420 RYVESLAS 427


>gi|254482823|ref|ZP_05096060.1| Exonuclease C-terminal domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036904|gb|EEB77574.1| Exonuclease C-terminal domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 460

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 190/458 (41%), Positives = 272/458 (59%), Gaps = 13/458 (2%)

Query: 24  QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83
           QFAG+R D     I    V + +PA+D+LP P+A  +TGITPQKAL +G+ EAEF R IH
Sbjct: 2   QFAGLRTDADLNPIGEPLVIYSRPANDFLPHPQACLVTGITPQKALAEGLPEAEFIRLIH 61

Query: 84  QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143
              + P TC +GYN++RFDD  SR   YRNFYD Y   W NGNSRWD++D++RA YA  P
Sbjct: 62  AELAAPGTCGVGYNSLRFDDEVSRYTLYRNFYDPYGREWQNGNSRWDIIDMVRACYALRP 121

Query: 144 DGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLY 203
           +GI+WP R+DG  SF+L+ L  ANGI H  AHDA +DV+AT+A+  LI+ K+P+L++Y+ 
Sbjct: 122 EGIEWPLREDGQPSFRLEALTAANGIAHEAAHDALSDVHATIAMARLIKTKQPRLYDYVL 181

Query: 204 DYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMR 263
            +R+K  +  L+D+  M P++HVSGMFGA R N  LI P+A HP  K+ VI  +L  D  
Sbjct: 182 KHRDKRSVSTLLDLDAMKPVLHVSGMFGAVRHNIGLIVPLAMHPTNKNEVICYDLMTDPA 241

Query: 264 VFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHK 322
           +       +    L+T  DEL +G     +K VH+NKCPIL+       E   R GI  +
Sbjct: 242 MLMQQSPEETRTLLYTRADELPEGTERPGLKSVHINKCPILVTAKMADPETAARLGISGE 301

Query: 323 RCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADV-DRQIMDRI 376
           +C  +L  LR+           + +AI++        D D  LY G F    D+++MD++
Sbjct: 302 QCRAHLAALREYRGRDSQGFVQKIQAIFSGRQFDEITDPDRMLYSGGFFGATDKRLMDQV 361

Query: 377 LRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR---- 432
             ++ E+L++   PF D RL E+ FRYRARN+P TLS +E   W E+R + LT       
Sbjct: 362 RESSAEELASATFPFEDGRLTEMLFRYRARNYPQTLSGEELALWEEYRFQRLTEPDAGSS 421

Query: 433 --IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             +EEY+  +Q+L    +    +  L+  L +Y   ++
Sbjct: 422 ICMEEYQELIQTLVTSGELTLPQCELMEQLLDYSDTLL 459


>gi|87121491|ref|ZP_01077380.1| exodeoxyribonuclease I [Marinomonas sp. MED121]
 gi|86163334|gb|EAQ64610.1| exodeoxyribonuclease I [Marinomonas sp. MED121]
          Length = 457

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 175/454 (38%), Positives = 266/454 (58%), Gaps = 8/454 (1%)

Query: 24  QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83
           QFAG+R D ++ +I    + +C+ A+D LP P+A  +TGI+PQ A R+G  E EF   I 
Sbjct: 2   QFAGIRTDLEFNQIGEPIMIYCQLAEDVLPHPDACLLTGISPQDANREGYPETEFMAMIE 61

Query: 84  QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143
           + F+ P TC +GYN+IRFDD   R  FYRNF D Y   W N  SRWD++D++R  YA  P
Sbjct: 62  KEFATPGTCALGYNSIRFDDEVVRFGFYRNFIDPYAREWQNACSRWDIIDLVRMCYAIRP 121

Query: 144 DGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLY 203
           +GI WP  +DG  S KL+DL  AN I H  AHDA +DVY T+ +  LI++K+PKL++Y +
Sbjct: 122 EGINWPKNEDGQVSLKLEDLTKANDIAHEQAHDALSDVYGTIEMAKLIKQKQPKLYDYYF 181

Query: 204 DYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMR 263
             R K +L+K ID   M P +HVSGMFGA ++  A +AP+A HP  K+ VI  +L  D +
Sbjct: 182 KMREKGELQKFIDPYRMKPFLHVSGMFGAIKNYAAFVAPIAPHPTNKNGVILFDLMQDAQ 241

Query: 264 VFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKE-HFERWGIDHK 322
              DL   ++  R+F++ + L     +P+K +H N+ P + P  + K      R  +D +
Sbjct: 242 PLIDLSVDEIRHRVFSTKEALGDTPRLPLKTLHYNRSPAVAPATFLKDTSVVSRLNLDGE 301

Query: 323 RCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFFADVDRQIMDRILRTAP 381
            C +NL +L+    L ++   ++ + +    +D D  LY  GFF+  D+  M+ I +T  
Sbjct: 302 ICRQNLAILKSYPELANKMSQVFMQSHEKIDKDPDVMLYSGGFFSREDKARMEEIRQTPL 361

Query: 382 EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR------IEE 435
             LS L+L F DRRLPE+  RY  RN+P  L+  ++Q+W E+R+  L          ++ 
Sbjct: 362 NALSELSLSFDDRRLPEMLMRYIGRNYPEQLTSTQRQEWEEYRQAKLLDPSAGASICMDA 421

Query: 436 YKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           + N+L  L+ E +  + K+ ++  L +Y Q + P
Sbjct: 422 FFNRLNELAQETELSKSKQIMLQDLADYAQSIYP 455


>gi|327394409|dbj|BAK11831.1| exodeoxyribonuclease I SbcB [Pantoea ananatis AJ13355]
          Length = 412

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 215/412 (52%), Positives = 286/412 (69%), Gaps = 1/412 (0%)

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            ITGITPQ A   GV EAEF+ RIH  F+   TC++GYNN+RFDD  +RNIFYRNFYD Y
Sbjct: 1   MITGITPQIAASRGVSEAEFAARIHALFTAEQTCVVGYNNVRFDDEVTRNIFYRNFYDPY 60

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            WSW NGNSRWDLLDVMRA YA  P+GI WP  +DG  SF+L+ L  ANG+ H NAHDA 
Sbjct: 61  GWSWQNGNSRWDLLDVMRACYALRPEGINWPENEDGFPSFRLEHLTKANGVAHENAHDAM 120

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           +DVYATLA+  L++EK+PKLFE+L+ +RNKN+L  LIDI  M PLVHVSGMFGA+R NT+
Sbjct: 121 SDVYATLAMAKLVKEKQPKLFEFLFTHRNKNKLMTLIDIPQMKPLVHVSGMFGAARGNTS 180

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
            + P+AWHP  ++++I  +L+GDM     LD+  L +RL+T   EL     +P+K VH+N
Sbjct: 181 WVVPLAWHPDNRNALIVVDLAGDMTPLLTLDADSLRERLYTRKSELGDQSAIPVKLVHIN 240

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVD 357
           KCP+L P +  + E   R GID K CL+NL  LRQ   +R++  AI+      + S DVD
Sbjct: 241 KCPVLAPANTLRPEDAGRLGIDRKSCLDNLATLRQHPEIREKLVAIFADAEPFTPSDDVD 300

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
           +QLYDGFF+D DR  M+ I +TAP  L  L+L F   R+ +L FRYRARNFP TL + E+
Sbjct: 301 TQLYDGFFSDADRAGMNIIRQTAPANLPALDLTFDSPRVAKLLFRYRARNFPGTLDDAEQ 360

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           Q WL+HR+++L   +++ +  +L+SL+  ++ D+ K   + ALY Y Q ++ 
Sbjct: 361 QRWLQHRREVLNPDKVQSFLMELESLASLHESDQEKLAQLKALYLYAQELVS 412


>gi|148927622|ref|ZP_01811085.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1]
 gi|147887031|gb|EDK72536.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1]
          Length = 476

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 163/472 (34%), Positives = 255/472 (54%), Gaps = 6/472 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F  YD ET G D   DR  QFAG R     + I        +  DD LP P+AV +
Sbjct: 5   MAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPSPDAVMV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITPQK   +G+ EAEF +  H     P T  +G+NNIRFDD + R   +RNF+D Y W
Sbjct: 65  TGITPQKTHEEGIAEAEFIKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNFHDPYEW 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +W +G SRWDLLDV+R   A  P GI WP       + +L+ L   N +EH  AHDA +D
Sbjct: 125 AWKDGRSRWDLLDVVRMTRALRPGGIVWPVDKSDKPTNRLELLTSENNLEHSQAHDALSD 184

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYA +A+  ++R+K+PKLFEYL+  R+K  + +L++     P+V+ SG + A+   T+++
Sbjct: 185 VYALIAITRMVRDKQPKLFEYLFSIRDKKAVTQLVNPYKPKPIVYTSGRYDANYHKTSVV 244

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG--LVPVPIKEVHLN 298
            P+A   R   +    +L  + + F DL   ++ KRL    +E K    V +P+KEV  N
Sbjct: 245 FPIAEGSR-PGTTFVYDLRHNPQQFTDLSPEEIKKRLLAKWEERKDPNFVAIPVKEVTHN 303

Query: 299 KCPILMPIDYCKK-EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           + P + P+   ++   +E   + ++   ++L +L++  +L  + K  Y       S D +
Sbjct: 304 RAPAVAPLGVLEQGGGWENIQLTNETVRKHLEVLQRSPDLVTKIKTAYESRSFPKSSDAE 363

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
           +QLYD F  D D+  +  +   +  +L+  +  F+D+RLP L  RY+ARNFP +LSE+E+
Sbjct: 364 AQLYDSFLNDKDKTHIQAVRNASERELADFHPEFNDKRLPPLLIRYKARNFPRSLSEEEQ 423

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
            +W  +R   L    +  Y   +  +  +    E  + L+  L  + + ++P
Sbjct: 424 VEWEAYRATRLQAE-LPGYMGAIARI-AKTDPSENTQFLLQELQLWAESIVP 473


>gi|302339540|ref|YP_003804746.1| exodeoxyribonuclease I [Spirochaeta smaragdinae DSM 11293]
 gi|301636725|gb|ADK82152.1| Exodeoxyribonuclease I [Spirochaeta smaragdinae DSM 11293]
          Length = 484

 Score =  326 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 172/472 (36%), Positives = 257/472 (54%), Gaps = 8/472 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M      YD ETFG    LDR AQFAG+R D    ++    V +CK   DY+PDP+A  I
Sbjct: 1   MARSIYWYDLETFGTHPRLDRIAQFAGLRTDEALNELGEPLVLYCKITQDYVPDPKACLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP++ LR G+ E  F  RI++ F  P +C+ G+N+I FDD + R   YRN  D +R 
Sbjct: 61  TGITPEETLRKGLSERRFIERINEEFMQPGSCVAGFNSIAFDDEFIRATLYRNLMDPFRR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDLLDV+RA     P GI WP  ++G  +F+L+ L  AN + H NAHDA +D
Sbjct: 121 EWAGGNSRWDLLDVLRAARDLRPQGITWPEGENGRPTFRLEKLTEANALPHQNAHDALSD 180

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+A+  L+REK+PK+F YLY  R K+  R+LID+    P +H S M       T+++
Sbjct: 181 VRATIAMARLLREKQPKIFSYLYRGRIKDHARQLIDLHKRRPFLHTSAMLSNEYGYTSIL 240

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
           APVA HP  +++++  +L  D     +    +L + +F   +EL      + +  +H+N+
Sbjct: 241 APVAPHPANQNAILCFDLRQDPEPLIERSVDELRRLIFAPSEELSLEESRIRLIPIHINR 300

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
            P+L P+     +  +R G+D   C +    L + + L  +   ++ +      +D + +
Sbjct: 301 SPVLAPLSTLDPDTAKRLGLDVTLCGKRAAKLAEASLLTQKIMEVFRRDEAEIRRDPELE 360

Query: 360 LYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           +Y  GFF+D DRQ M+R    +PE +      F DRRLPEL +R+  RN    L E E++
Sbjct: 361 IYSGGFFSDADRQRMERFRELSPEAMLKRRGDFYDRRLPELAWRFVCRNHSEILDENERK 420

Query: 419 DWLEHRKKMLTRSR---IEE---YKNKLQSLSGEYKGDEGKEGLINALYEYL 464
            W       L       I +   +K K++ LSG+     G + +I  L E+ 
Sbjct: 421 KWKSFCAGRLLFPPERLINDFAFFKRKVKELSGDTNLPAGDKKIIKKLAEWA 472


>gi|269468419|gb|EEZ80084.1| exonuclease I [uncultured SUP05 cluster bacterium]
          Length = 471

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 174/475 (36%), Positives = 268/475 (56%), Gaps = 16/475 (3%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  YDYETFG     DR +QFAG+R D     ++   +F+CKP  D LP PEA  +T
Sbjct: 1   MKTFYWYDYETFGISPKTDRISQFAGIRTDENLNILDE-HMFYCKPTHDCLPAPEACAVT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+PQ   + GV+E EF ++I+  F+ PNTCI+GYN+IRFDD ++R   YRNF D Y W 
Sbjct: 60  GISPQDCEQKGVIEHEFIKKINSEFTTPNTCIVGYNSIRFDDEFTRYTLYRNFIDPYAWH 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           W +GN+RWD+LDV+R  YA   D  ++W   ++G   FKL  L+LANGIEH NAHDA AD
Sbjct: 120 WKDGNTRWDILDVVRLCYALKKDNSLKWVHNEEGKPVFKLDQLSLANGIEHANAHDALAD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+ +  +I+E +P+LF+Y +  R K  +   I +    P++H SGM+ A+ S T L 
Sbjct: 180 VRATIGIAKIIKETQPQLFDYAFSLREKKTVEGKIKL--FEPMLHTSGMYPATLSCTRLA 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
             +A+HP Y D  I  NL  D  +  +LD  +L   +FT   EL  G+  + IK++  NK
Sbjct: 238 VALAYHPEYNDRAIVFNLDQDPSILLELDVEELKTLMFTKQSELPDGVKRLEIKDLIFNK 297

Query: 300 CPILMPIDYC-KKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDV 356
            P+ +P  Y    +  E+  ID    ++ L  ++   +  ++       N    + + DV
Sbjct: 298 SPMFVPNVYKLDPKVVEQLQIDMDTRMQRLDFIKDNQSAINKVVQDLYRNDKERAPTVDV 357

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D  LYDGF  + D++I +++ R + ++L   +  F D++L  L   ++ARN+P++L+E E
Sbjct: 358 DQALYDGFMDNADKRIGEQVQRLSVDELKKFHPKFKDQKLSTLLMHFKARNYPNSLTEDE 417

Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
            +DW E  +  +         +++Y  ++  +  ++     KE L   L  Y + 
Sbjct: 418 AEDWFETVQGRIQAGENGYTSLDDYYQRITLMQKQH---PEKETLWKQLESYAES 469


>gi|145641395|ref|ZP_01796974.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
 gi|145273938|gb|EDK13805.1| exodeoxyribonuclease I [Haemophilus influenzae 22.4-21]
          Length = 430

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 196/430 (45%), Positives = 278/430 (64%), Gaps = 4/430 (0%)

Query: 42  VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
           +F+CK  +DYLP PEAV ITGI PQ+    G+ E EF+ +I   FS PNTC++GYNNIR+
Sbjct: 1   MFYCKQTNDYLPAPEAVMITGIMPQECNEKGLSEPEFAAKILAEFSQPNTCVMGYNNIRY 60

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           DD  +R  FYRNF D Y +SW NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+
Sbjct: 61  DDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLE 120

Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            L  ANGIEH NAHDA ADVYAT+A+  LI+EK+PKLF+Y ++ R K ++ KL+D   M 
Sbjct: 121 KLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGVMA 180

Query: 222 PLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSH 281
           PLVHVSGM G  R N   +AP+AWHP  ++++I C+L+GD+       + +L   L+T  
Sbjct: 181 PLVHVSGMLGNYRGNCTWVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRANLYTKK 240

Query: 282 DELKGLV--PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339
            EL+     PVP+K VH+NKCPIL P      E   R GID + CL+NL  LR   ++R+
Sbjct: 241 SELEERSVPPVPLKLVHINKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIRE 300

Query: 340 RFKAIY-NKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPE 398
           +   I+  +   +S+ +V+++LY+GFF++ D+  M  +     E+L+   L F D+R+PE
Sbjct: 301 KVTDIFNEERQFASNDNVETELYNGFFSNADKNNMSILRSLPAEKLAEHGLAFEDKRIPE 360

Query: 399 LFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN 458
           L F YRAR+F  TL+  E+  W ++R+  L      ++++ LQ L+ E+  +  K  L+ 
Sbjct: 361 LLFHYRARHFYKTLTRAEQIKWQKYRQNKL-EKSAVDFESSLQRLAEEHSDNPEKLSLLQ 419

Query: 459 ALYEYLQWVI 468
            +YEY   ++
Sbjct: 420 QVYEYGTKLL 429


>gi|262276726|ref|ZP_06054519.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114]
 gi|262223829|gb|EEY74288.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114]
          Length = 473

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 99/481 (20%), Positives = 190/481 (39%), Gaps = 33/481 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++V YD+ET GR    D+  Q   + V+  ++ ++  E   C      +P+P A+ +   
Sbjct: 2   NYVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEAR-CSLKPGTVPEPGALLVNKT 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           TP    +  +      + + + F   +    IGYN++ FD+ + R  F+++  D Y  + 
Sbjct: 61  TPDMLKKTNLSHFGMVQMMKETFEKWSPAMFIGYNSLSFDEEFLRKTFFKSLTDVYL-TN 119

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGN R D+L ++R+ + + P+ ++ P  + G   FKL  +A  NGI H NAHDA  DV 
Sbjct: 120 TNGNKRGDILGLVRSAHLYYPECLKTPISEKGNAVFKLDQIASMNGISHDNAHDAMGDVL 179

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  +I +K P +++      +K  +  ++  +     +     +   ++   +++ 
Sbjct: 180 ATMGMAKIIADKAPSVWKASLMTMSKQDVGNIVQKEK----LFCVNEYFYGKARPFVVSF 235

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           V  HP Y       +L  D   +  +D   L   +  S        P  ++ V  NK PI
Sbjct: 236 VCNHPVYNWPQ-CFDLKNDPEDYFKMDMSTLKDAMKKS--------PKLLRSVKDNKHPI 286

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS---- 358
           +M  +Y          I   +  E    ++Q      +  AI  +               
Sbjct: 287 IMNPNYATNFDT-YKQIGISKLNERAEKIKQNEEFGKKVSAILQEEAQEKQDLDSQLDVQ 345

Query: 359 ----QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
                   GF  D  +  +    +   +    +     D R      R      P  + +
Sbjct: 346 AEESIYSGGFPDDKTKMALKEFQKAEWKDRLVIADKMKDERYNYFAKRLMYEEAPDIMPK 405

Query: 415 KEKQDWLEHRKKMLTR------SRIEEYKNKLQSLSGEYKG--DEGKEGLINALYEYLQW 466
               +      K +        + I +  N+L SL  +Y+   DE +  + N +  +L+ 
Sbjct: 406 DLYNEIHRGIAKRILSTNDEKWNTIPKAYNELDSLRAKYEEDGDEERLSITNDINNFLEE 465

Query: 467 V 467
           +
Sbjct: 466 I 466


>gi|330813552|ref|YP_004357791.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486647|gb|AEA81052.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 473

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 199/481 (41%), Gaps = 33/481 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++  YD+ET GR    D+  Q   V V+ ++++++  E   C      +P+P A+ +   
Sbjct: 2   NYAFYDFETTGRSGTWDQIIQVGAVLVNAEFQELDRFEA-KCGLRPGLVPEPGALLVNKT 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           TP    +  +       ++ Q F        IGYN+I FD+ + R   ++   D Y  + 
Sbjct: 61  TPDMLRKTNLSHYGLVDQMLQTFKKWTPAIFIGYNSIGFDEEFLRKTLFKTLNDPYL-TQ 119

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGN R D+L + R  + + PD I+ P+ D G   FKL  LA  NGIEH NAHDA  DV 
Sbjct: 120 FNGNKRGDILGLARTAHLYYPDCIKTPTSDKGNPVFKLDQLAPMNGIEHGNAHDAIGDVL 179

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  +I +K P +++      +K ++  ++  +     +     +   ++   ++  
Sbjct: 180 ATIGIAKIISDKAPAVWKASLMTTSKAEVNTIVQNEK----LFCFNEYFYGKARPYVVTF 235

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           + +HP+Y       +L  D   + ++    L K +  S        P  I+ V  NK PI
Sbjct: 236 LGFHPKYSWPQ-CFDLKEDPNTYFNMSMEDLKKAMKKS--------PKIIRSVKNNKHPI 286

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ-------D 355
           +M   + +        +   + +E   L++     +++   I  +               
Sbjct: 287 IMNPKFGEN-FEGYKQLGMAKLIERAELIKNNEEFKNKVARILEEEAQEKEDLDSQLDVQ 345

Query: 356 VDSQLYDGFFADVDRQ-IMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
            +  +Y G FA    +  M    ++  +    +   F D+R      R      P  L +
Sbjct: 346 AEESIYSGGFASEQDKSTMKTFHQSDWKDKLLIADKFKDQRFNYFAKRLMYEENPSILPK 405

Query: 415 KEKQDWLEHRKKMLTR------SRIEEYKNKLQSLSGEY--KGDEGKEGLINALYEYLQW 466
               +      K +        + I +  N+L +L  +Y  + D  +  ++N L  +L+ 
Sbjct: 406 DMHDEIHRAIAKQILSTNDEKWNTIPKAYNELDNLRAKYEEENDTERLAMMNDLNNFLEE 465

Query: 467 V 467
           +
Sbjct: 466 I 466


>gi|118602911|ref|YP_904126.1| exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567850|gb|ABL02655.1| Exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 471

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 178/474 (37%), Positives = 267/474 (56%), Gaps = 16/474 (3%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  YDYETFG    +DR +QFAG+R D  +  I+  ++F+CKP +D LP PEA FIT
Sbjct: 1   MKTFYWYDYETFGISPKIDRISQFAGIRTDENFNIIDE-QMFYCKPTNDCLPSPEACFIT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+PQ   + G++E EF ++IH  FS  NTCI+GYN+IRFDD ++R+  YRNF D Y W 
Sbjct: 60  GISPQLCEQKGMIEHEFIKKIHAQFSTSNTCIVGYNSIRFDDEFTRHTLYRNFIDPYTWH 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGI-QWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           W NGN+RWD+L+V+R  YA   D   +W     G   FKL  L+LAN IEH NAHDA AD
Sbjct: 120 WQNGNTRWDILNVVRLCYALKKDTSLKWVYDKQGNPVFKLDQLSLANDIEHANAHDALAD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V+AT+A+  +I++ +P+LF Y +  R K  +   I +    P++H + M  A  S T L 
Sbjct: 180 VHATIAIAKIIKQTQPQLFNYSFSLREKKTVASKISL--FEPMLHTTDMHPAQLSCTRLS 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNK 299
             +A+HP Y D V+  NL  D  V  +LD   L    FT   EL      + IKE+  NK
Sbjct: 238 VALAYHPEYNDRVLMFNLDQDPCVLLELDIEALKTLTFTKQSELSKEVERLQIKELIFNK 297

Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS--QDV 356
            P+ +P I   + +  ++  ID  +C+++L+ ++       +      K        ++V
Sbjct: 298 SPMFVPNIYKLEPKIIKQLNIDMNQCMQHLSFIKDNQLKIGKIVQDLYKNDQKHIALKEV 357

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D  LYDGF  + D++I ++I   +  +L   +  F D +L  LF  ++ARN+P+TL+E E
Sbjct: 358 DQSLYDGFIDNTDKRICNQIQALSVHKLKEFHPKFKDEKLSRLFMHFKARNYPNTLTENE 417

Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
           K+DW E  +  +  +      I++Y  K+ ++  ++     +E L   L  Y +
Sbjct: 418 KEDWFEIVQGRIQTNQNGYITIDDYLQKINTMRTQH---PHQEKLWQQLEAYSK 468


>gi|319942625|ref|ZP_08016933.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803804|gb|EFW00736.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis
           3_1_45B]
          Length = 502

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 161/493 (32%), Positives = 249/493 (50%), Gaps = 34/493 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFIT 61
            F  YDYETFG D   DRPAQFAG R    +  +  ++ E+F+C+P +D LP+PE+  +T
Sbjct: 9   TFYWYDYETFGVDPRKDRPAQFAGRRTRLDFSPLSGDTGEIFYCRPTEDQLPNPESCLLT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ     GV E+EF+  I +  + P T  IGYN + FDD  +R +F+RNF D Y  S
Sbjct: 69  GITPQYCAEKGVCESEFADLIWERLNTPGTVSIGYNTLGFDDEVNRFLFWRNFLDPYTHS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------------SFKLQDLALANGI 169
           W  G SRWDL  V+ A +A   D I+WP  ++                FKL+ L  ANGI
Sbjct: 129 WAKGCSRWDLFPVVCAAWALRGDTIKWPRWEEIDPIKYPKAEGRKGVCFKLEFLTKANGI 188

Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
           EH +AHDA +DV AT+ +  L+ E++PKL+ + ++ R   ++   +   +M P+V V+  
Sbjct: 189 EHGHAHDALSDVEATIGMAKLLAEREPKLWRWAFENRTTAKVSAAV--ADMKPVVWVTPK 246

Query: 230 FGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLV 288
           FG +R  T + A               +LS D  V Q L   ++ +RLF S  E  +G+ 
Sbjct: 247 FGIARGCTGIAACFFQEKHDCWM---WDLSFDPTVLQSLSYEEIKQRLFPSIKERAQGIE 303

Query: 289 PVPIKEVHLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFK 342
            +PI+ +  N  P +   +    +E  +++GID      NL  L+      QT   +   
Sbjct: 304 RLPIRRLKANASPFVCANLKVLSRERAQKYGIDLDVAAANLQKLKAVAPAVQTIFAELAA 363

Query: 343 AIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLP--FSDRRLPELF 400
              +    + S D D  LY GF +  D+    +I    PE L+       F D++  E+ 
Sbjct: 364 ERRSNDAAAPSADPDRSLYSGFASSGDKARFVQIRSMMPEHLAAEAPKFRFDDQKFAEML 423

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGE-YKGDEGKE 454
           FR+RARN+P  LS +E + W +     +   R     + +Y +++          DE  +
Sbjct: 424 FRFRARNWPEMLSAEETERWRQFCADRIMSGRDGMLQLSDYFDQIDEAQASGLYDDERHQ 483

Query: 455 GLINALYEYLQWV 467
            ++ ALY++ + +
Sbjct: 484 QVLEALYDWGETL 496


>gi|219870303|ref|YP_002474678.1| exonuclease I [Haemophilus parasuis SH0165]
 gi|219690507|gb|ACL31730.1| exonuclease I [Haemophilus parasuis SH0165]
          Length = 457

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 185/417 (44%), Positives = 258/417 (61%), Gaps = 5/417 (1%)

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGITPQ   + G+ E EF+ RIH  FS PNTC++GYNNIR+DD  +R  F+RNF+D Y
Sbjct: 1   MVTGITPQLCNQQGLPEPEFAARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPY 60

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +SW NGNSRWDLLDV+RA YA  P+GI+W   D+G  SFKL++L  ANGI H NAHDA 
Sbjct: 61  EYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFKLENLTKANGIAHDNAHDAM 120

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           ADVYAT+A+  LI++K+PKLF++    R K  L ++ID+  MTPLVHVSGM G  R NTA
Sbjct: 121 ADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTA 180

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296
            + P+AWHP  +++VI C+LSG++    +  S  L +RL+T   EL+  GL  VP+K VH
Sbjct: 181 WVVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKAELEAQGLYTVPLKLVH 240

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLR--QQTNLRDRFKAIYNKPYTSSSQ 354
           +NKCPIL P      E+  R GID   CLENL  L+  +             +    +S 
Sbjct: 241 INKCPILAPAKTLLPENATRLGIDRLACLENLKRLKSQKNLVREKVLDIFSEERNYPTSN 300

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
           ++++ LYDGFF   D+  M  +    PE+L+   L FSD R+  L F YRAR++  TL+ 
Sbjct: 301 NIETTLYDGFFEPADKNNMAILRSLKPEELAHHGLKFSDPRIEPLLFHYRARHYAETLTR 360

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
            E+  W ++  + L  ++ E ++  +  LS +Y  +  K  L+  L  Y   ++  +
Sbjct: 361 AEQVRWQKYCYQQL-EAKAEAFEQAVDLLSAQYHDNPDKIKLLTDLTAYAAQLMQPK 416


>gi|330837024|ref|YP_004411665.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374]
 gi|329748927|gb|AEC02283.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374]
          Length = 474

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 165/479 (34%), Positives = 248/479 (51%), Gaps = 23/479 (4%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  YD ETFG +   DR  QFAGVR D     +    + + +P  DYLPDP A  +T
Sbjct: 4   KKTFFWYDLETFGLNPYYDRIVQFAGVRTDMDLTPVGQPILLYARPTIDYLPDPLACLVT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A+  G+ E +F+  I +     NTC +G+N+IRFDD + RN+ YRN  D YR  
Sbjct: 64  GITPQEAMEKGLRENDFANAILKEMGQKNTCSVGFNSIRFDDEFIRNLLYRNLIDPYRRE 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-ATSFKLQDLALANGIEHVNAHDAKAD 180
           W +GNSRWD+LD++RA +   PD + WP   D     FKL +L  AN I H +AHDA +D
Sbjct: 124 WADGNSRWDVLDLIRAAHDLRPDSLAWPPSKDNGNPVFKLTELTTANNISHEHAHDALSD 183

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYATLA+  L++E+ P+LF +    R+K +++++++    TP +H    F   R  T  +
Sbjct: 184 VYATLAISRLLKERNPQLFVWALSLRDKKKVKEIVNPPFGTPFLHTCASFTTPRGCTRPV 243

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
             +++ P   +SVI  +L+ D+              LFT+ DE    VP  ++   LNKC
Sbjct: 244 VAISFVPSNPNSVICFDLTQDLDP------------LFTASDEDIMRVPGVLRIA-LNKC 290

Query: 301 PILMPIDY--CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           P + P+           R  ID K  +     +RQ+ NL  RF++   +       D D 
Sbjct: 291 PFVSPLSVLGKDDAIARRLDIDMKTAMARYERIRQEINLPSRFRSAVERDEYEQVADPDF 350

Query: 359 QLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
           ++Y  GFF+D DR+    + +T   Q  +LNL F D R PE+ +RY  RN+P TL E++K
Sbjct: 351 RIYAGGFFSDADRERFSIVRKTEASQKLSLNLRFDDSRAPEMVWRYVCRNWPETLDEQQK 410

Query: 418 QDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
             W       +           + Y  K+Q           ++ ++ AL E+ + +  +
Sbjct: 411 ARWQSFSANRILNPPGDIMVTWQFYTRKIQEKLQSNDTPAHEKPVLAALKEWGEMIARE 469


>gi|84387297|ref|ZP_00990317.1| exonuclease I [Vibrio splendidus 12B01]
 gi|84377746|gb|EAP94609.1| exonuclease I [Vibrio splendidus 12B01]
          Length = 351

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 177/346 (51%), Positives = 233/346 (67%), Gaps = 1/346 (0%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +  +DYET+G   A DRP+QFAGVR D+ +  I    V +C+P  DYLP PEA  IT
Sbjct: 6   QPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALIT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITPQKA   G+ E EF  +IH   + PNT  +GYN+IRFDD  +R   YRNF D Y WS
Sbjct: 66  RITPQKAASQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDVMRA++A  PDGI WP  ++G  SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRAVHALRPDGINWPPNEEGYPSFKLEHLSVANGIEHENAHDAMADV 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L   ++  +PK+F+YLY+ R+K +L  L+DI NMTPL+HVSGMFG   + T+ I 
Sbjct: 186 IATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNYTSWIV 245

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+AWHP  +++VI  +L+ D     +LD+ +L  RL+T   EL +  +PVPIK V LNKC
Sbjct: 246 PMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKC 305

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN 346
           PIL P      E+ E  GID ++CL+NL LLR+   +R++   +Y+
Sbjct: 306 PILAPAKTLTAENAETIGIDRQQCLKNLALLREHPEIREKLIGLYS 351


>gi|221134294|ref|ZP_03560599.1| exodeoxyribonuclease I [Glaciecola sp. HTCC2999]
          Length = 488

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 157/478 (32%), Positives = 246/478 (51%), Gaps = 15/478 (3%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+ +DYET+G     D P QFA +R D   ++ +       K   DYLP P+AV +TGI
Sbjct: 7   SFLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYLPHPQAVLVTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ  L +G  E  F ++IHQ    PNTC++GYN+I+FDD  SR  F+RNF D Y+  + 
Sbjct: 67  TPQMTLAEGEYEYTFMQKIHQAMIQPNTCVVGYNSIKFDDEVSRFSFFRNFMDPYQREYL 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +GNSRWDL++++RA YA  P+GI+WP  D+G  SFKL+ L   NGI H NAHDA +DV+A
Sbjct: 127 HGNSRWDLINLVRACYALRPEGIKWPLGDNGLVSFKLERLTQENGISHTNAHDALSDVHA 186

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+A+  LI++++PKLF Y Y  R+K  + ++++  +  PL+ ++    A     ++I P+
Sbjct: 187 TIAIAQLIQQQQPKLFAYAYQLRSKQAVIRILEQHHGQPLIFINPYRSAKFGCVSIIMPM 246

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKCPI 302
             HP  K++ +  +L+ D+    + D   L +  F    +     P +    +  N+CP 
Sbjct: 247 CPHPVNKNATVCIDLTKDIFPLINEDLDTLQRIQFLPKAQRNEETPDIATIVIKHNQCPF 306

Query: 303 LMPIDYCKKEHFERWGIDH---KRCLENLTLLRQQTNLRDRFKAIYNK------PYTSSS 353
           L PI    +   E   ID     + +E+L  + Q             +           +
Sbjct: 307 LAPIKTLSQSRSEALNIDLNKVDQQVEHLKHICQDQESYANLIMTLTQLNSQTYDAEKPA 366

Query: 354 QDVDSQLYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL 412
            DV++ LY G F  D ++Q   ++   +P +L  L       R+ ELF R+ ARNF  TL
Sbjct: 367 TDVEASLYTGGFMNDAEKQFCQQVHMASPNELVNLKNNTPSPRIDELFQRFIARNFLDTL 426

Query: 413 SEKEKQDWLEHRKKMLTRS----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
           S   +  W    ++ LT +     +  Y   ++ L         +  L+  L +Y + 
Sbjct: 427 STDLQSQWYVDCQRRLTNNTQKLTLMRYFEIIEELKSTENLSSTQLYLLEELTKYGKE 484


>gi|311086276|gb|ADP66358.1| exonuclease I [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
          Length = 505

 Score =  299 bits (764), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 193/463 (41%), Positives = 281/463 (60%), Gaps = 6/463 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  F+ YDYETFG   ALD+PAQFA +R D     I+  + F+C P+DDYLPDP +V IT
Sbjct: 35  TPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITPQ   ++G  E  FS++I+      NTC++GYNNI FDD  +RNIFYRNF+D Y WS
Sbjct: 95  HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD+L+++RA YA  P GI WP  + G TSFKL DL   N I H+NAH+A +DV
Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ +  L+++K+P+LF++ +  R KN+L KLID++N  P++++S  FGA   N + I 
Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWH    + +I  +L  D++   ++      K++      +K L+   +  +HLN+CP
Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTLINM-----CKKICFDSIFIKNLLDSGVVLLHLNRCP 329

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
           IL PI   +KE + R         + + L+++        K I++K   ++    VD ++
Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF   D++ +  I  T P  L  +   F D RL  LFFRYRARNF +TL + EK+ W
Sbjct: 390 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFFYTLDDNEKKIW 449

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
           L+H   +L     +EYKN +Q L  +Y  +  K  L+  L ++
Sbjct: 450 LKHCMNVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLLDF 492


>gi|311087440|gb|ADP67520.1| exonuclease I [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 505

 Score =  299 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 192/463 (41%), Positives = 280/463 (60%), Gaps = 6/463 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ YDYETFG   ALD+PAQFA +R D     I+  + F+C P+DDYLPDP +V IT
Sbjct: 35  PPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITPQ   ++G  E  FS++I+      NTC++GYNNI FDD  +RNIFYRNF+D Y WS
Sbjct: 95  HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD+L+++RA YA  P GI WP  + G TSFKL DL   N I H+NAH+A +DV
Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ +  L+++K+P+LF++ +  R KN+L KLID++N  P++++S  FGA   N + I 
Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWH    + +I  +L  D++   ++      K++      +K L+   +  +HLN+CP
Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTLINM-----CKKICFDSIFIKNLLDSGVVLLHLNRCP 329

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
           IL PI   +KE + R         + + L+++        K I++K   ++    VD ++
Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF   D++ +  I  T P  L  +   F D RL  LFFRYRARNF +TL + EK+ W
Sbjct: 390 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFFYTLDDNEKKIW 449

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
           L+H   +L     +EYKN +Q L  +Y  +  K  L+  L ++
Sbjct: 450 LKHCMNVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLSDF 492


>gi|257471605|ref|ZP_05635604.1| exonuclease I [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
          Length = 505

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 193/463 (41%), Positives = 282/463 (60%), Gaps = 6/463 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T +F+ YDYETFG   ALD+PAQFA +R D     I+  + F+C P+DDYLPDP +V IT
Sbjct: 35  TPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITPQ   ++G  E  FS++I+      NTC++GYNNI FDD  +RNIFYRNF+D Y WS
Sbjct: 95  HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD+L+++RA YA  P GI WP  + G TSFKL DL   N I H+NAH+A +DV
Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ +  L+++K+P+LF++ +  R KN+L KLID++N  P++++S  FGA   N + I 
Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWH    + +I  +L  D++   ++      K++      +K L+   +  +HLN+CP
Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTLINM-----CKKICFDSIFIKNLLDSGVVLLHLNRCP 329

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
           IL PI   +KE + R         + + L+++        K I++K   ++    VD ++
Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GFF   D++ +  I  T P  L  +   F D RL  LFFRYRARNF +TL + EK+ W
Sbjct: 390 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFFYTLDDNEKKIW 449

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
           L+H   +L     +EYKN +Q L  +Y  +  K  L+  L ++
Sbjct: 450 LKHCMNVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLLDF 492


>gi|88800886|ref|ZP_01116440.1| putative exodeoxyribonuclease i protein [Reinekea sp. MED297]
 gi|88776399|gb|EAR07620.1| putative exodeoxyribonuclease i protein [Reinekea sp. MED297]
          Length = 517

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 170/475 (35%), Positives = 249/475 (52%), Gaps = 14/475 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              ++ YDYET+G   + DR AQFA VR D     IE     FCKP  D + DP AV IT
Sbjct: 8   PPSYLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVIDPGAVQIT 67

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ++P +  + G+ E EFS+ +H   + PNTC  GYN+IRFDD  SR +FYRN  + Y   
Sbjct: 68  RLSPLELEQTGLSEWEFSQAVHNAMAQPNTCTTGYNSIRFDDECSRFLFYRNLINPYERE 127

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWDLLDV+R  +A  PDGI+WP RDDG+ SF+L+ L  ANG+ H NAHDA +DV
Sbjct: 128 WKNGNSRWDLLDVVRMTHALRPDGIEWPRRDDGSPSFRLEHLTAANGLSHANAHDAVSDV 187

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+AL  LIR+++PKLF+Y +  R+K++ R+ ID+    P +H SG   AS     +  
Sbjct: 188 KATIALAQLIRKQQPKLFDYAFSLRSKHRAREAIDLVGGKPHLHFSGKIPASEFCMGIEV 247

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
           P+  HP   + VI  ++  D     D D+  L   L+   +EL +G    P+K +HLN+ 
Sbjct: 248 PLMAHPDRNNEVIVIDIREDPAWILDHDADTLRTWLYAKTEELPEGARRPPLKTIHLNRS 307

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ- 359
           P++ P+     E   R G+D      +   +     L      ++ +    ++     Q 
Sbjct: 308 PMIAPMSLLDDETTTRLGVDLDAIQHHYRWVADHPELNRLAMDVFTETQERAAITDPEQA 367

Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
           LY GF +D D+ +++R+   +  PEQ    +    D RLP +     AR FP  L+E++ 
Sbjct: 368 LYSGFISDHDQALLNRMRTGKLPPEQWLDNSHLLQDDRLPTILLNLLARAFPDCLTEQQL 427

Query: 418 QDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
            +W + R+  L          + +      +L  E   D      +     YL+ 
Sbjct: 428 SEWQDQRRTYLIEQQDERHLTLSQALTDTLALLAETPDDPA----LTDTRMYLES 478


>gi|320086500|emb|CBY96271.1| exonuclease I, 3'-> 5' specific [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 333

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 234/323 (72%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L   V VP+K VH+NKCP
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308

Query: 302 ILMPIDYCKKEHFERWGIDHKRC 324
           +L   +  + E  +R GI+    
Sbjct: 309 VLAQANTLRPEDADRLGINPPAL 331


>gi|261855671|ref|YP_003262954.1| exodeoxyribonuclease I [Halothiobacillus neapolitanus c2]
 gi|261836140|gb|ACX95907.1| Exodeoxyribonuclease I [Halothiobacillus neapolitanus c2]
          Length = 495

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 158/489 (32%), Positives = 232/489 (47%), Gaps = 27/489 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+ YD+ET G D   DRP QFA +R + + E I+S    +   + + LP P+AV +TGI
Sbjct: 2   SFLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGI 61

Query: 64  TPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            PQ     G   EAEF+  IH     P TC +G+N++RFD    R +F+RN  D Y   W
Sbjct: 62  LPQTLASSGGRPEAEFAALIHAEMMQPGTCAVGFNSLRFDAELLRFMFWRNLRDPYAHEW 121

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +GNSRWD+LD  RA     P+GI WP+ + GA + +L+ L   N I H NAHDA  DV 
Sbjct: 122 KSGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKVNVIAHANAHDALGDVE 181

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           ATLA   L+R + PKLFEYL   R K  +   +D       VHVSG   ++  + ++ A 
Sbjct: 182 ATLAFARLMRAQSPKLFEYLLSLRKKAVVADFVDNPERASFVHVSGRISSTLGSASVFAN 241

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKCP 301
           +          +  +L  D     D D   LA R F    + +     +PIK +HLN+ P
Sbjct: 242 LGQVQGINTQRLLWDLRFDPTEVLDDDMETLAARRFLRDADAQDNQHRLPIKLLHLNRAP 301

Query: 302 ILMPIDYCKKEHF-ERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           +++P    K+    ER  +D     +N   + Q +  + D+  A+  +    +SQD +  
Sbjct: 302 VVVPNAILKEGDIVERMQLDLDAVQKNTRTMAQFKREVADKLHAVLAEQMAFASQDAECA 361

Query: 360 LYDGFFADVDRQIMDRILRTAPEQ----------------LSTLNLPFSDRRLPELFFRY 403
           LY+GF  +VDR  +D   R   +                    +   + D RLPEL FR+
Sbjct: 362 LYEGFMPNVDRYALDDFNRVFDQAMAAGGSAQDEPVTEALRKLMAQSWQDARLPELVFRF 421

Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYK------NKLQSLSGE-YKGDEGKEGL 456
            AR  P  L+E E+  W       L  +  + Y         + +L  +    DE    L
Sbjct: 422 VARLRPDLLNEDERTQWQSWVDSRLNAAPDQRYMGFAGFFAAIDALMADAAYRDEATLAL 481

Query: 457 INALYEYLQ 465
           +  L  + +
Sbjct: 482 LTQLKAWGE 490


>gi|71892235|ref|YP_277968.1| exonuclease I [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796341|gb|AAZ41092.1| exonuclease I [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 500

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 203/488 (41%), Positives = 308/488 (63%), Gaps = 18/488 (3%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F IYDYETFG + ALDRPAQFAG+R +   + IE  ++FFC+ ++DYLPDP++V IT
Sbjct: 9   QPSFFIYDYETFGINPALDRPAQFAGIRTNNTLKPIEKEKIFFCRLSNDYLPDPQSVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI PQ  LR G++E+EF+RRIHQ F +P TCI+GYNNI FDD +SRNIFYRNF+D Y W+
Sbjct: 69  GIAPQDTLRHGLIESEFARRIHQLFCIPKTCILGYNNIHFDDEFSRNIFYRNFHDPYLWA 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +  GNSRWDLL V+RA Y+  P+GI WP       SF+L+DL  AN I+H++AHDA +DV
Sbjct: 129 YQRGNSRWDLLHVLRACYSLCPNGITWPLNIQNKPSFRLKDLTQANAIKHLSAHDAMSDV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALI 240
           YATL L  LI+E +P+LF++L+D+R K QL+K+ID+  M PL+ +        ++    I
Sbjct: 189 YATLELTKLIKEAQPQLFQFLFDHRTKYQLQKIIDLDTMNPLIFIMNKINNKYKNFITYI 248

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV-PIKEVHLNK 299
           AP++ HP   + +I C+L+G++    +L+   + ++L+++H  +  ++   P++ + LN 
Sbjct: 249 APISRHPINPNILIACDLNGNIDNLVNLNINTIYQKLYSNHITIYDILKKIPLRFIRLNA 308

Query: 300 CPILMPIDYCKKEHFE-----RWGIDHKRCLENLTLLRQQTNLR----------DRFKAI 344
           CPIL+PI++ +K +       +   +++ CL+NL  +R   N                + 
Sbjct: 309 CPILIPINFFEKNNINTTYTMQLSTNYRYCLKNLNFIRMHENSVYLRNKINTLYTIIGSY 368

Query: 345 YNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYR 404
            N+    ++  VDSQLY   F + DR+I++ I RT  ++L  L     D RL  L F YR
Sbjct: 369 INQKNIYNNLHVDSQLYHRLFNNSDRKIIESIRRTHSKELKNLCTDHVDTRLKPLLFYYR 428

Query: 405 ARNFPHTLSEKEKQDWLEHRKKMLTRSRIEE-YKNKLQSLSGEYKGDEGKEGLINALYEY 463
           ARNFP+TL+ +E++ WL ++K  L  +   + Y +KL  L   YK ++ K  L+++L +Y
Sbjct: 429 ARNFPNTLNYQEQKKWLNYKKNKLFNTDQSKSYNDKLNQLLSIYKYNDQKITLLHSLQKY 488

Query: 464 LQWVIPKE 471
            Q++    
Sbjct: 489 YQYLYEVH 496


>gi|161485723|ref|NP_660867.3| exonuclease I [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|25090272|sp|Q8K923|EX1_BUCAP RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
           Full=DNA deoxyribophosphodiesterase; Short=dRPase
 gi|21623449|gb|AAM68078.1| exodeoxyribonuclease I [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 482

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 201/458 (43%), Positives = 277/458 (60%), Gaps = 6/458 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+ YDYETFG   +LD+PAQF+ +R D+ +  +E  + F+C P+DDYLPDP ++ ITGI
Sbjct: 11  NFLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSSILITGI 70

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TP+   + G  E +FS++IH     PNTCIIGYNNI FDD  +RNIFYRNF D Y WSW 
Sbjct: 71  TPEYTEKHGFNEYKFSKKIHDVLLKPNTCIIGYNNINFDDEITRNIFYRNFLDPYEWSWK 130

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N NSRWDLL+V+RA YA  P GIQWP  + G   FKL DL   N I H NAHDA +DVYA
Sbjct: 131 NNNSRWDLLNVVRACYALRPSGIQWPKNEFGLPVFKLSDLTQKNNISHYNAHDATSDVYA 190

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+ L  LI+ K+PKLF++ + YR KN+L +LIDI+  TP+++VS  FGA R N + I P+
Sbjct: 191 TIELAKLIKRKQPKLFDFFFKYRKKNELCRLIDIEKFTPIIYVSSYFGALRQNMSCILPL 250

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           +W    K+ +I  +L  D+            K +  S+  +K L  + I  V+LN+CPIL
Sbjct: 251 SWDLHNKNILISIDLFKDIDKLI-----VFCKTVSISNISIKDLFDLGIVLVYLNRCPIL 305

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS-SQDVDSQLYD 362
            PI   +KE   R         + + L+++   L D  K +  K   +  S +VD Q+YD
Sbjct: 306 APIKVIRKEDTNRLNFKKYFYYKKINLVKKNYFLIDLVKNVLLKKNENKNSLNVDLQIYD 365

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
            FF   D+ ++ +I  T    L  + L F D RL ELFFRY+ARNF + L   EK++W+ 
Sbjct: 366 SFFNFHDKNLIKKISLTKSSDLKKMKLDFKDPRLKELFFRYKARNFFNILKNDEKKEWIN 425

Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
           +  K L    +  Y +K++SL   Y  D  K  L++ L
Sbjct: 426 YCLKTLNSFFLTGYIDKIESLLKIYSYDVKKNNLLSDL 463


>gi|148244981|ref|YP_001219675.1| exodeoxyribonuclease I [Candidatus Vesicomyosocius okutanii HA]
 gi|146326808|dbj|BAF61951.1| exodeoxyribonuclease I [Candidatus Vesicomyosocius okutanii HA]
          Length = 473

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 164/478 (34%), Positives = 261/478 (54%), Gaps = 20/478 (4%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F  YDYETFG    +DR +QFAG+R D  +  ++  ++F+CKP +D L  PE   IT
Sbjct: 1   MKTFYWYDYETFGISPKIDRISQFAGIRTDENFNILDE-QMFYCKPTNDCLLSPETCLIT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+PQ   + G++E +F ++IH   S P+TC+IGYN+IRFDD ++R   YRNF D Y W 
Sbjct: 60  GISPQLCEQKGMIEHKFIKKIHAQLSTPDTCVIGYNSIRFDDEFTRYALYRNFIDPYTWH 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGI-QWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           W NGN+RWD+LDV+R  YA   D   +W   +     FKL  L+LAN IEH  AH+A AD
Sbjct: 120 WKNGNTRWDILDVVRLCYALKKDTSLKWVYDEQNKVIFKLDQLSLANNIEHTYAHNALAD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+A+  +I++ +P+LF Y +  R K  +++ I +    P++H S ++ A+ S T L 
Sbjct: 180 VYATIAIAKIIKKTQPQLFNYAFSLRKKKTIKEKIKL--FEPMLHTSRVYSATLSCTRLS 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE---LKGLVPVPIKEVHL 297
             +A+H  Y D V   NL  D  +  +L+   L   +FT +++    K +  + IKE+  
Sbjct: 238 VALAYHS-YHDRVFVFNLDQDPCILLELNIKTLKTLMFTKNNQSALSKEMKGLQIKELIF 296

Query: 298 NKCPILMPIDYCKK-EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQ 354
           NK P+ +P  Y  + +  ++  ID   CL+ L  +++   +  +       N      S 
Sbjct: 297 NKSPMFVPNVYKLESKIIKQLKIDMSTCLQRLEFIKKNQVIISKVVQDLYRNDQQRQPSS 356

Query: 355 DVDSQLYDGFFADVDRQI-MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
           DVD  LYD F  D   +   ++I   +  +L   +  F D RL +L   ++ARN+P+ L+
Sbjct: 357 DVDQALYDDFINDNTDKHICNQIQTLSTNELKNFHPKFKDNRLSKLLIHFKARNYPNILT 416

Query: 414 EKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
           E EK++W +  ++ +         I++Y  ++  +  ++     +E L   L  Y + 
Sbjct: 417 ENEKEEWFKTVQERVQTGKNGYTTIDDYLARINIIRKQH---PNQEKLWKQLETYSKS 471


>gi|325971901|ref|YP_004248092.1| exodeoxyribonuclease I [Spirochaeta sp. Buddy]
 gi|324027139|gb|ADY13898.1| Exodeoxyribonuclease I [Spirochaeta sp. Buddy]
          Length = 471

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 238/472 (50%), Gaps = 23/472 (4%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
               YD ETFG D   DR AQFAG R D     I    V +CK +DDYLPDP +  IT I
Sbjct: 9   TIFWYDLETFGLDSRYDRIAQFAGQRTDLNLNPIGEPIVLYCKLSDDYLPDPLSCTITSI 68

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+  + G+ E++   RI+  FS PNT + G+N IRFDD + RN  YRNF D Y+  WD
Sbjct: 69  TPQEVNKKGICESDLIDRINSEFSKPNTVVAGFNTIRFDDEFIRNALYRNFLDPYKREWD 128

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG--ATSFKLQDLALANGIEHVNAHDAKADV 181
           N  SRWD++D++RA Y   P+GI WP R +     +F+L  L  AN IE V AHDA  DV
Sbjct: 129 NYCSRWDIIDLVRAAYDLRPEGIAWPPRKEETGNPTFRLVALTQANNIEQVGAHDALVDV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+A+  LI+EK+PKL+EY +  R K Q++K++      P+++ +  F  +   + LI 
Sbjct: 189 RATIAIARLIKEKQPKLYEYYFALRAKTQVKKVVQTPFGEPVLYTAAFFSKNEGCSRLIT 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+       +++I  +LS D+          L K                +  + +NKCP
Sbjct: 249 PITHMKSNANAIICFDLSKDVAPLLQATEETLLKT-------------EGVFTLSINKCP 295

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            + P++    +   + GID +  L     +  QT L    + I  K        VD QLY
Sbjct: 296 FVSPLNVLTDQLAIKLGIDKELALFRHQQIVNQTKLLMTARNIEEKYEGVDD--VDFQLY 353

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           D FF D D++  + I +  P+   +L+L F D R+  L FR+ ARN+   L++++K+ W 
Sbjct: 354 DRFFGDADQKRFNLIRQAEPKDKLSLHLDFEDNRVAPLLFRHVARNWSEVLTDEQKRKWR 413

Query: 422 EHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
                               +K K++      +    ++ ++  L  Y + +
Sbjct: 414 SFCANRTLNPPGSIKMNWNFFKRKIEEKLASTETSAEEKRVLADLKAYGEEL 465


>gi|91762381|ref|ZP_01264346.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718183|gb|EAS84833.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1002]
          Length = 475

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 169/480 (35%), Gaps = 29/480 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  I+D E+   + +     +  G+ VD  +++++    F C+  +  +P   A+ +   
Sbjct: 2   NLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRFN-FRCRLPEGEVPQAMALIVNKT 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +     +  +   +   ++   F   +    +G++NI FDD   RN F+R     Y  + 
Sbjct: 61  SVDLLTKGNLSHYQMLSQLEATFKKWSPAIFMGWSNIGFDDEMIRNEFFRGIRYPY-ITN 119

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N R D L++ R  +A     I+  +   G    KL+ LA  NG E   AH A  D  
Sbjct: 120 ATPNKRHDGLNIARGAHAVDESVIKTETNAKGNAVMKLESLARMNGFESSGAHSALFDAE 179

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
            T+ ++ LI++ +P+ ++      NK+    +   + M  L               L   
Sbjct: 180 LTVKVLGLIKKNQPQTWDTFLRTANKSDTETIFKTEKMFTLAEYHFGKNYRFVVAPLHPK 239

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              HP Y+      +L  D     D+   +L   +              ++ +  NK PI
Sbjct: 240 HCIHPIYQWGQ-AFDLKIDPIPLFDMSISELKSAIKKL---------KFLRTIRSNKAPI 289

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV------ 356
           ++   Y  +       +D     E   L+               +     +Q        
Sbjct: 290 ILDASYGLQV-EPYSNLDPDLIKERAKLVNSNERFSQNVLTALRETAEEKAQFDSQVDLL 348

Query: 357 -DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
            +  +Y  F    D  +  +    + +    L   F D R+     +   +  P TL   
Sbjct: 349 AEETIYKKFTPQKDTALFPKWHAASWKDKLILLDKFEDERMVSFGKKIIYQESPETLPPD 408

Query: 416 EKQDWLEHRKKMLTRSRIEEYKN------KLQSLSGEY--KGDEGKEGLINALYEYLQWV 467
             +       + +     E++        +  +L   Y  + DE K   ++ + E+++ +
Sbjct: 409 MFKTIKRGIAERILSDEKEKWWTCKEFYFECDNLRDRYTNEKDEKKLKFLDEINEFVEGI 468


>gi|71083189|ref|YP_265908.1| exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062302|gb|AAZ21305.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1062]
          Length = 475

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/480 (17%), Positives = 169/480 (35%), Gaps = 29/480 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  I+D E+   + +     +  G+ VD  +++++    F C+  +  +P   A+ +   
Sbjct: 2   NLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRFN-FRCRLPEGEVPQAMALIVNKT 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +     +  +   +   ++   F   +    +G++NI FDD   RN F+R     Y  + 
Sbjct: 61  SVDLLTKGNLSHYQMLSQLEATFKKWSPAMFMGWSNIGFDDEMIRNEFFRGIRYPY-ITN 119

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N R D L+++R  +A     ++      G    KL+ LA  NG E   AH A  D  
Sbjct: 120 ATPNKRHDGLNIVRGAHAVDESVVKTEINAKGNAVMKLESLARMNGFESSGAHSALFDAE 179

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
            T+ ++ LI++ +P+ ++      NK+    +   + M  L               L   
Sbjct: 180 LTVKVLGLIKKNQPQTWDTFLRTANKSDTETIFKTEKMFTLAEYHFGKNYRFVVAPLHPK 239

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              HP Y+      +L  D     D+   +L   +              ++ +  NK PI
Sbjct: 240 HCIHPIYQWGQ-AFDLKIDPIPLFDMSISELKSAIKKL---------KFLRTIRSNKAPI 289

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV------ 356
           ++   Y  +       +D     E   L+               +     +Q        
Sbjct: 290 ILDASYGLQV-EPYSNLDPDLIKERAKLVNSNERFSQNVLTALRETAEEKAQFDSQVDLL 348

Query: 357 -DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
            +  +Y  F    D  +  +    + +    L   F D R+     +   +  P TL   
Sbjct: 349 AEETIYKKFTPQKDTALFPKWHAASWKDKLILLDKFEDERMVSFGKKIIYQESPETLPPD 408

Query: 416 EKQDWLEHRKKMLTRSRIEEYKN------KLQSLSGEY--KGDEGKEGLINALYEYLQWV 467
             +       + +     E++        +  +L   Y  + DE K   ++ + E+++ +
Sbjct: 409 MFKTIKRGIAERILSDEKEKWWTCKEFYFECDNLRDRYTNEKDEKKLKFLDEINEFVEGI 468


>gi|254284002|ref|ZP_04958970.1| exonuclease I [gamma proteobacterium NOR51-B]
 gi|219680205|gb|EED36554.1| exonuclease I [gamma proteobacterium NOR51-B]
          Length = 408

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 162/410 (39%), Positives = 232/410 (56%), Gaps = 12/410 (2%)

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
           +  G  E +F  +IH   +VP TC +GYN+IRFDD   R   YRNF+D Y+  + NGNSR
Sbjct: 1   MDRGDSECDFVDKIHAALAVPGTCGVGYNSIRFDDEVMRFALYRNFFDPYQREYANGNSR 60

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
           WDL+DV RAIYA  P+G QWP+RD+G  SF+L+DL  ANGI H  AHDA +DV AT+ L 
Sbjct: 61  WDLIDVARAIYALRPEGTQWPARDNGLPSFRLEDLTAANGIAHGAAHDALSDVDATIDLA 120

Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
              +  +P LF  L   R K  +  L+D+ ++ P+VHVS M+G+ RSN AL+ P+  HP 
Sbjct: 121 RHFQNVQPALFAELLSMRRKRHVETLMDLGSLRPVVHVSSMYGSDRSNLALVVPLVRHPV 180

Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPID 307
            ++ +I  +LS     F    +  +A RLFT   EL +G V  PIK +H+NK P+++   
Sbjct: 181 NRNEIICADLSQPPD-FLSESATDMAARLFTPASELPEGAVRPPIKTIHINKSPVVLNTQ 239

Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQ-----TNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + + E  ER G+D +    +L  +RQ        L+ R + IY++   +   D D  LYD
Sbjct: 240 WVRGEVAERLGLDGEAHRRHLAEIRQANDKNPEGLKQRLQDIYSERRFAPRTDPDVMLYD 299

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
           GFF + DR   D +   +PEQL++    F D RL EL FRYRARNFP TL  +E   W E
Sbjct: 300 GFFPNSDRSQFDGLRAASPEQLAS-GWVFEDARLEELLFRYRARNFPATLDAEESARWQE 358

Query: 423 HRKKMLTRSRIE----EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           H +     +        ++ +L          +     ++AL +Y+Q ++
Sbjct: 359 HCRHRYFDADAPFPLTAFREELAQERSAPDLSDSVARALDALEDYVQTLL 408


>gi|260577353|ref|ZP_05845324.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2]
 gi|259020426|gb|EEW23751.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2]
          Length = 457

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 116/472 (24%), Positives = 192/472 (40%), Gaps = 31/472 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV YD ET G   A D+P QFA +R D    +IE      C+ A   +P P+A+F+TG+T
Sbjct: 3   FVFYDLETTGISPAFDQPLQFAAIRTDDSLVEIERVN-LRCRIAPHIIPSPQALFVTGVT 61

Query: 65  PQKALRDGVV-EAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           P + +   +    EF++ I +          +G+N IRFD+   R  FY+N   +   + 
Sbjct: 62  PAQLVDPELPSLFEFTQTIMELTERWAPATWVGFNTIRFDEEVLRQAFYQNLQPNIYATQ 121

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGN+R D+L  + A++  +   + WP+ D   T+FKL  LA ANG    NAHDA  DV 
Sbjct: 122 LNGNNRLDILTAVYAVWCRNRGLMHWPTDDTDRTTFKLDRLAPANGFNAHNAHDALGDVE 181

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  LI +  P L+  +   R+K  +  ++  ++  P+  V   FG       +   
Sbjct: 182 ATIHIAGLIAKGDPALWSAILHNRDKQNVTAIL--ESFRPVELV-LRFGGGPPRAYVGCF 238

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                    +    +L          D   L K   T+  E     P  I+ +  NK P 
Sbjct: 239 CGTAAGNPTNAAFFDLEAG-------DPEVLIKADDTALFEAVDSSPQIIRSIATNKVPS 291

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L PI     +H  +                    +     A Y +   +    V+ Q+Y 
Sbjct: 292 LFPIASPDPDHLRKAAFIAANPAFRAR-------VGQAMAARYVEDPDAPPPPVEKQIYG 344

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
           GFFA  DR ++    R    +   +    +D RL +L  R  A + P  +S  E + +  
Sbjct: 345 GFFAKADRDLLADFQRADWRRRQEIANVLTDVRLRQLGRRLIAFHAPELMSSDEAKQFDA 404

Query: 423 HRKKMLT--------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
             +             + I      +         D+     ++ + ++++ 
Sbjct: 405 FLRDRWNAEEGPKTEWTTIASAMRAIAEQRALPGTDD---AALDEIADFIRQ 453


>gi|154252272|ref|YP_001413096.1| exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1]
 gi|154156222|gb|ABS63439.1| Exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1]
          Length = 468

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 110/470 (23%), Positives = 185/470 (39%), Gaps = 27/470 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV +D ET G     D+   FA +R D    +I+  E    +     +P P A++  G+
Sbjct: 2   SFVFFDTETTGLRHGFDQIVHFAAIRTDADLNEIDRFEA-HSRLLPHVVPHPFALYTNGL 60

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           +  +   DG+       + I +     +    +GYN+IRFD+   R  F++  + +Y  S
Sbjct: 61  SIGRLTDDGLPSHYVMVQTIRRKLLSWSPSIFVGYNSIRFDEEMLRQAFFQTLHPAYLTS 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             +GN R D L +M A  A SP  +  P    G  +F+L+ LA ANGIEH  AHDA ADV
Sbjct: 121 N-HGNCRADALGLMTAAAALSPSCLLVPFGATGRPTFRLEQLASANGIEHTRAHDAMADV 179

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            ATL L   + E+  +L++    +  K  +   +D ++      +   F ++ +  A + 
Sbjct: 180 LATLGLCRCVYERSSELWQRFVRFSKKATVADFVDSEDA----FILTEFFSNEAYHAPVV 235

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
            +   P   +  +   L GD+  F  +    L   L           P PI+   +N  P
Sbjct: 236 CLGRDPEQPNGRLCLRLDGDVGRFYTMSDEDLRVEL--------ARKPSPIRRFRINAAP 287

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN--KPYTSSSQDVDSQ 359
            L  +   + +     GID          ++          + Y   +   + S+ V+ Q
Sbjct: 288 TLTALYDARDQMLN--GIDLDEVETRARRVKDDPTFCAHLISAYASIRGPHAPSRHVEEQ 345

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +YD F    D   M+R  +    ++ ++   F D RL     R         L E+ +  
Sbjct: 346 IYDRFPGPDDEARMERFHKVGWREVLSIVQSFEDERLRCFGLRLVYFEHRSVLPEEIRLR 405

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
                   L         +     +  +L G    D    G++     YL
Sbjct: 406 VERELTDRLVEEESGGLTLRRALQETDALLGSDYTD--TNGILADYRAYL 453


>gi|254451818|ref|ZP_05065255.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
 gi|198266224|gb|EDY90494.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
          Length = 500

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 113/462 (24%), Positives = 193/462 (41%), Gaps = 30/462 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV YD ET G   A D+P QFA +  D  + + +   +  C+ A   LP P+A+ +T +T
Sbjct: 3   FVFYDLETTGLSPAFDQPLQFAAIYTDENFVEKDRVNI-RCRLAPHILPSPQALVVTRVT 61

Query: 65  PQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           P +     +    EFS+++ +          +GYN I+FD+   R  FYRN   +   + 
Sbjct: 62  PDQLTDPSLPSLFEFSQQVAELTERWAPAIWVGYNTIKFDEEVLRQTFYRNLSPNVYATQ 121

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGN+R+D+L  + A Y   PD + WP  D G  SFKL  LA ANG +  NAHDA  DV 
Sbjct: 122 FNGNTRFDILPAVYAAYVREPDLLAWPKDDTGRRSFKLDRLAPANGFKAHNAHDALGDVE 181

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  LI  + P L+  L D  +K +++    +++  P   V+  FG     +     
Sbjct: 182 ATIHIARLIAMRSPALWSELLDNAHKARVQA--KLESFRPYELVT-RFGGGEPRSYTGCF 238

Query: 243 VAWHPRYKDSVIGCNLS-GDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
             +    +      +L   D   F +     +   +           P  I+ V  NK P
Sbjct: 239 CGYSQGNRAQAAFFDLDAADPAEFVEASDEAIFAAV--------DATPKIIRGVSTNKAP 290

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            L+      +EH  R  +  +     L        +     A + +   +  + V+ Q+Y
Sbjct: 291 ALLEHTAPSEEHLRRAAVIAEAPAFRLR-------VGAAMAARFVEDPDAPPKPVERQIY 343

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
             F+++ D+Q++         +   +    +D RL +L  R  A + P  LS +E   + 
Sbjct: 344 GEFYSNADKQLLQEFQHATWPRRQEIVASLTDPRLRQLGRRLVAFHSPELLSSEETALFN 403

Query: 422 EHRKKMLTRSRIE--------EYKNKLQSLSGEYKGDEGKEG 455
              ++  +             + +  L+ L      +  +  
Sbjct: 404 GFLREKWSAPDGPETEWMTHGKAQAALEELRAAGAAEPHEID 445


>gi|27904977|ref|NP_778103.1| exonuclease I [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|32129519|sp|Q89A43|EX1_BUCBP RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
           Full=DNA deoxyribophosphodiesterase; Short=dRPase
 gi|27904375|gb|AAO27208.1| exodeoxyribonuclease I [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 481

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 177/466 (37%), Positives = 278/466 (59%), Gaps = 9/466 (1%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+ YDYETFG++ ALD+P+QF+ ++ D  +  I S +  FC P+ DYLPDPE+V ITGI
Sbjct: 10  TFLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPDPESVLITGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +P+     GV E EF+++I+  F   +TCIIGYNNI FDD ++RNIFYRNF +SY WSW 
Sbjct: 70  SPKYTSLFGVNEFEFAKKIYSLFMKSDTCIIGYNNIYFDDEFTRNIFYRNFLNSYEWSWK 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWD+LD++RA Y   P+GI WP  +D + S +L D++LAN I H  AH+A +DVYA
Sbjct: 130 NGNSRWDMLDLLRACYVLRPEGINWPRNEDNSVSLRLSDISLANNIVHNVAHNASSDVYA 189

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+ +  LI++KKPKLF + + YR K  +  LID+ ++ P+V++S  FG      + I P+
Sbjct: 190 TMNIAKLIKQKKPKLFNFFFKYRTKKAILTLIDVNSLNPIVYISRFFGVVNRYISYIVPI 249

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
            WHP   + ++  +LS D++   +       KR    +   K +  + I+ +++N+CPIL
Sbjct: 250 LWHPINSNILVSIDLSQDVQKILN-----FFKRNSILNVNYKEIFLMGIRFIYVNRCPIL 304

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ---TNLRDRFKAIYNKPYTSSSQDVDSQL 360
           +P +  + +   R  I++K    NL LLR+         +F     +    +  +VD ++
Sbjct: 305 IPTNVIRMKDRIRLRINYKLFQNNLVLLRKNIFLKKKLKKFLCSIAEAPKYNGSNVDLKM 364

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+ FF+ +D  ++  I  T P +   +N    D R+ +LF  + AR  P  L   EK  W
Sbjct: 365 YNSFFSYIDNNVIKNIHSTLP-KRIKINFMKYDNRINQLFILFLARYRPDMLDYSEKYFW 423

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
           ++    + + + I++Y+NK+  L  +YK       L+  L+EY+++
Sbjct: 424 IQRYLNIFSYANIQKYENKILKLIVKYKNHVRNVQLLEELFEYVKY 469


>gi|319760584|ref|YP_004124522.1| exodeoxyribonuclease I [Candidatus Blochmannia vafer str. BVAF]
 gi|318039298|gb|ADV33848.1| exodeoxyribonuclease I [Candidatus Blochmannia vafer str. BVAF]
          Length = 491

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 188/480 (39%), Positives = 293/480 (61%), Gaps = 17/480 (3%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F IYDYETFG + ALDRPAQFAG+RVD +   I   E+FFC+   DYLP+PE+V  T
Sbjct: 7   QPNFFIYDYETFGLNPALDRPAQFAGIRVDDKLCPIAKKEIFFCQIPHDYLPNPESVLTT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ  L+ G+ E+EF+ RI   F+ PNTCI+GYNNI FDD ++R+ FYRNF D Y W+
Sbjct: 67  GITPQYTLQYGLTESEFAYRIFNIFNKPNTCIVGYNNINFDDEFTRHTFYRNFCDPYLWA 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +++GNSRWDLL ++RA Y+  P+ I WP  +    SF+L DL  AN IEH+N HDA +DV
Sbjct: 127 YNHGNSRWDLLPILRAYYSLYPEKIYWPINNKNKISFRLIDLTYANHIEHLNVHDAMSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTALI 240
           YATL ++ L ++  P  F++LY++R K+QL+K+I+   + PL+ +S        +    +
Sbjct: 187 YATLEIMKLTQKTHPYFFQFLYNHRTKDQLKKIINFDFIDPLIFISNTINDTYNNFIKFL 246

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNK 299
           AP++WHP  K+ +I  +L+    +  +L+  +L + L+     L  L   +P++ + LN 
Sbjct: 247 APISWHPNNKNILIAYDLNSKPDLLLNLNINKLYQNLYQGTQNLSDLFKQIPLQLIKLNS 306

Query: 300 CPILMPIDYCKKEHFERWGIDH----KRCLENLTLLRQQ----------TNLRDRFKAIY 345
           CPIL+PI   KKE+   +        + CL+NL  ++                   ++ +
Sbjct: 307 CPILIPIHLIKKENIFYYKNSLFSYYQYCLKNLNFIQTNINHTYLKNKIKTFYTTIESYF 366

Query: 346 NKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRA 405
               T     VD+QLY  FF   DRQ++++I  T  +QLS + +  +D RL  LFF Y+A
Sbjct: 367 KLKQTYQKVHVDNQLYFKFFNFSDRQLINKIRNTNIQQLSKIKINSTDTRLKLLFFFYKA 426

Query: 406 RNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
           RNFP++L+ KE++ WL++++ +L +S+ + Y   + +L   ++ +  +  L++ L +Y +
Sbjct: 427 RNFPYSLNVKEQKSWLDYKRLLLQQSKFQNYLTNIDNLLL-HQNNLIQINLLHKLKQYYK 485


>gi|310780268|ref|YP_003968600.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926]
 gi|309749591|gb|ADO84252.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926]
          Length = 487

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 145/479 (30%), Positives = 264/479 (55%), Gaps = 16/479 (3%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   ++ YDYETFG D   DR +QFAGVR D  ++ ++   V++CK A+DYLP+PEA  I
Sbjct: 1   MKKTYLWYDYETFGADPKRDRISQFAGVRTDMDFKVVDE-MVYYCKVAEDYLPNPEASII 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP+++   G+ E E +  + + F+   T  IGYN+I+FDD  +RN+FYR F D Y  
Sbjct: 60  TGITPKESNEKGITENELAEILFKEFTKEGTVTIGYNSIKFDDEVTRNLFYRTFRDPYER 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W N  SRWD +  +  +Y   P+ ++WP +DDG  SF+L++L++ANGI H NAHDAK+D
Sbjct: 120 EWKNNCSRWDFMRAILGVYVMKPELLKWPLKDDGRPSFRLEELSIANGIIHENAHDAKSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           VYAT+ L  LI +K P +F+Y ++ R+K+ ++  +    +   +H+   +G  R   ++I
Sbjct: 180 VYATIGLAELISKKSPNVFDYFFNLRDKDFVKSELSKDEL--FLHIDFGYGYDRGYASII 237

Query: 241 APVAW--HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296
             +    +   K++ +  ++  D+   + +D  ++ + L+ S+++L+  G+    +K++ 
Sbjct: 238 YKIGDFINQGDKNAFLFIDILSDVENLEKMDFDEIKEYLYYSNEKLEEIGITRPGLKQIR 297

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
           +N+ P+++P +  +++      I      +   + +     ++ F  ++ +       D 
Sbjct: 298 INQSPLVIPYNNLREKPKFLEEISVNLKYKMEKIKKLSAKRKEEFLNVFTREKDKVKIDA 357

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           D  +Y  F +  D++ M  + R    +       F D++  EL+FR+  RN P  L+E E
Sbjct: 358 DLDIYGSFASQWDKKEMAAMHR----ENYQYIPKFKDKKYKELYFRFIGRNMPEILTEDE 413

Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
             +W  H  K ++        I+  KN++  L  +Y+G++ K  ++  +  Y + +  +
Sbjct: 414 MSEWKRHCYKCISNEREGFQNIDSLKNEILELEKKYRGEKEKIKILKDIKIYAENLEKE 472


>gi|254453670|ref|ZP_05067107.1| exodeoxyribonuclease I, putative [Octadecabacter antarcticus 238]
 gi|198268076|gb|EDY92346.1| exodeoxyribonuclease I, putative [Octadecabacter antarcticus 238]
          Length = 459

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 112/473 (23%), Positives = 196/473 (41%), Gaps = 33/473 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F  YD E  G   A D+P QFA +  D ++ ++E      C+ A   +P P A+ +TG+
Sbjct: 2   TFAFYDLEITGLSPAFDQPLQFAAILTDDEFREVERVN-LRCRIAPHIIPSPWALAVTGV 60

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            P + L  G+    EF++ I       +  I  G+N+IRFD+   R  FY+N   +   +
Sbjct: 61  RPAQLLDAGLPTLFEFTQEIGALIDRWSPAIWTGFNSIRFDEEVLRQAFYQNLSPNVYAT 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             NGN+R+D+L  + A Y   PD + WP  D G  S KL  LA ANG    NAHDA  DV
Sbjct: 121 QFNGNTRFDILPAVYAAYVREPDLLVWPEDDTGRRSLKLDRLAPANGFNAHNAHDALGDV 180

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ +  LI  + P L+  L D   K +++    +++  P   V+  FG     + +  
Sbjct: 181 EATVHIARLIATRSPALWSELLDNAQKARVQA--KLESFRPYELVTH-FGGGEPRSYVGC 237

Query: 242 PVAWHPRYKDSVIGCNLS-GDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
              +           +L   D   F +     L   +           P  I+ V  NK 
Sbjct: 238 LCGYSQGNSAHAAFFDLDAADPAEFVEASDEALFAAV--------DATPKIIRGVSTNKA 289

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P L+       EH  R  +  +     L        +     A + +   +  + V+ Q+
Sbjct: 290 PALLEHTAPSAEHLRRAAVIAEAPAFRLR-------VGAAMAARFVEDPDAPPKPVERQI 342

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y  F+++ D+Q++         +   +    +D RL +L  R  A + P  L+ +E   +
Sbjct: 343 YGEFYSNADKQLLQEFQHATWPRRQEIVASLTDPRLRQLGRRLVAFHSPELLNLEETALF 402

Query: 421 LEHRKKMLTRS--------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
                +  +             + + +L+ L      +  +   ++ + ++++
Sbjct: 403 NGFLLEKWSAPDAPETEWMTFRKAQAELEELRAAGAAEPHE---LDEIADFMK 452


>gi|330898429|gb|EGH29848.1| exonuclease I [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 307

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 142/307 (46%), Positives = 193/307 (62%), Gaps = 4/307 (1%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D    +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSD 179

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+AL  LIREK+PKL++YL   R+K ++++ + +  M PLVH+SG F A+R+   ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLLALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+AWHP  ++++I C+L  D        +  L +RL+T HD L  G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELPVPLKLLHINR 297

Query: 300 CPILMPI 306
           CP++ P+
Sbjct: 298 CPVIAPL 304


>gi|86139894|ref|ZP_01058460.1| exonuclease I [Roseobacter sp. MED193]
 gi|85823523|gb|EAQ43732.1| exonuclease I [Roseobacter sp. MED193]
          Length = 459

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 111/474 (23%), Positives = 193/474 (40%), Gaps = 33/474 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV YD ET G     D+P QFA +  D  + + +   +  C+ A   LP P+A+ +T +T
Sbjct: 3   FVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNI-RCRLAPHILPSPQALVVTRVT 61

Query: 65  PQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           P + +   +    EFS+++ +F         +GYN ++FD+   R  FY+N   +   + 
Sbjct: 62  PDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYATQ 121

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGN+R+D+L  + A Y   P  + WP+ D G  SFKL  LA ANG    NAHDA  DV 
Sbjct: 122 FNGNTRFDILPAVYAAYVRHPGLLVWPTDDTGRRSFKLDRLAPANGFNAHNAHDALGDVE 181

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  LI  + P L+  L D  +K +++    +++  P   V+  FG     + +   
Sbjct: 182 ATIHIARLIATRSPALWSELIDNAHKARVQA--KLESFRPYELVT-RFGGGEPRSYVGCF 238

Query: 243 VAWHPRYKDSVIGCNLS-GDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
             +           +L   D   F       +   +           P  I+ V  NK P
Sbjct: 239 CGYSHGNSAQAAFFDLDAADPSEFLGASDEAIFAAV--------DATPKIIRGVSTNKAP 290

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            L+       EH     +     + N         +       + +   +  + V+ Q+Y
Sbjct: 291 ALLEHTAPSAEH-----LHRATIIANAPEF--LRRVGAAMANRFVEDSDAPPKPVERQIY 343

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
             F++  D+Q++         +   +    SD RL +L  R  A   P  L+  E   + 
Sbjct: 344 GEFYSSADKQLLQEFQHATWPRRQEIVASLSDPRLRQLGRRLVAFYSPELLTADEMALFK 403

Query: 422 EHRKKMLTRS--------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            + +   +            E+ +  L  L      +  +   + A+  +L+ +
Sbjct: 404 AYLRDKWSAPDVPETEWMTFEKAEAALGELRSAGAAEPRE---LEAIGSFLKPM 454


>gi|15617148|ref|NP_240361.1| exonuclease I [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11386767|sp|P57620|EX1_BUCAI RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
           Full=DNA deoxyribophosphodiesterase; Short=dRPase
 gi|25403649|pir||G84994 exodeoxyribonuclease I (EC 3.1.11.1) [imported] - Buchnera sp.
           (strain APS)
 gi|10039213|dbj|BAB13247.1| exodeoxyribonuclease I [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 413

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 175/408 (42%), Positives = 252/408 (61%), Gaps = 6/408 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T +F+ YDYETFG   ALD+PAQFA +R D     I+  + F+C P+DDYLPDP +V IT
Sbjct: 8   TPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 67

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITPQ   ++G  E  FS++I+      NTC++GYNNI FDD  +RNIFYRNF+D Y WS
Sbjct: 68  HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 127

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD+L+++RA YA  P GI WP  + G TSFKL DL   N I H+NAH+A +DV
Sbjct: 128 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 187

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ +  L+++K+P+LF++ +  R KN+L KLID++N  P++++S  FGA   N + I 
Sbjct: 188 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 247

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWH    + +I  +L  D++   ++      K++      +K L+   +  +HLN+CP
Sbjct: 248 PIAWHENNSNILIAIDLFKDIKTLINM-----CKKICFDSIFIKNLLDSGVVLLHLNRCP 302

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
           IL PI   +KE + R         + + L+++        K I++K   ++    VD ++
Sbjct: 303 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 362

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408
           Y+GFF   D++ +  I  T P  L  +   F D RL  LFFRYRARNF
Sbjct: 363 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNF 410


>gi|254455766|ref|ZP_05069195.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082768|gb|EDZ60194.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211]
          Length = 481

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/485 (18%), Positives = 178/485 (36%), Gaps = 33/485 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET           +  G+ +D  ++++E      C+   D +P   A+ I   
Sbjct: 2   KYVVWDIETDSAQTDWATIIEIGGILLDENFKELERFSA-RCRMPQDRVPSATALCINKS 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
                 +  +   E   ++   F   +    +GY++I FDD   R  F+++    Y  + 
Sbjct: 61  NVDLLTKGNLSHYEMLSQVENKFKEWSPATFLGYSSINFDDEVIRKEFFKSLRKPYL-TN 119

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             GN R D L++++A +A   D ++      G  S KL+ LA  NG E   AH A  D  
Sbjct: 120 TEGNVRHDALNIVKAAFAIDDDILKTELNAKGNKSMKLESLARLNGFESAGAHSALFDTE 179

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
            T+ ++ LI++K+P ++       +K  +  LI  +N+  L               L   
Sbjct: 180 LTVKVLDLIKKKQPDIWTEYLKTSSKVVVENLIKQENIITLNEYFYGKSYLYLCAPLHPN 239

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              HP YK   +   L  D+   Q L+   L K +  S        P  ++ V  NK PI
Sbjct: 240 FCSHPVYKWGQVVD-LKADIEAIQKLNYEDLKKEMKKS--------PKFLRTVKSNKAPI 290

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS-------SSQD 355
           ++   +  K       +D     +   L++           I  +              +
Sbjct: 291 ILDKSFALKVD-PYKKLDSSLINKRAELVKTNEKFSKDISNILREAAEEKIETSSQEDIE 349

Query: 356 VDSQLYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
            +  +Y G F +  D+ +  +   +  ++   L   F D RL            P  L +
Sbjct: 350 PEESIYSGGFTSAKDQALFPKFHNSNWKEKFALLDKFEDERLITFGHGLIFNEAPEILPK 409

Query: 415 KEKQDWLEHRKKMLTRSRIEEY------KNKLQSLSGE------YKGDEGKEGLINALYE 462
           +  +         +  +  E++       ++   +         +K  + K   ++ + E
Sbjct: 410 EIHKKIKRRIASRILSTNKEKWWTVSAFYSECDEIRENEDKMFSFKTVDEKLKFLDGINE 469

Query: 463 YLQWV 467
           Y+  +
Sbjct: 470 YVMNL 474


>gi|330860010|emb|CBX70337.1| exodeoxyribonuclease I [Yersinia enterocolitica W22703]
          Length = 337

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 161/337 (47%), Positives = 239/337 (70%), Gaps = 2/337 (0%)

Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
           MRA YA  P+GI WP  ++G  SFKL+ L  ANG+EH++AHDA +DVYAT+A+   +++ 
Sbjct: 1   MRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDVYATIAMAKRVKQA 60

Query: 195 KPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254
           +P+LF+YLY +R+K+++  LIDI +MTPLVHVSGMFGA+R NT+ +AP+AWHP  K++VI
Sbjct: 61  QPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVI 120

Query: 255 GCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKCPILMPIDYCKKEH 313
            C+L+GDM    +LDS  L +RL+T  D+L      VP+K VH+NKCP+L P      E+
Sbjct: 121 MCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKCPVLAPAKTLLPEN 180

Query: 314 FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQI 372
            +R GID +RCL+NL LLRQ   +R++  A++ +    + S DVD+QLY+GFF+D DR  
Sbjct: 181 ADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQLYNGFFSDADRAT 240

Query: 373 MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR 432
           M  IL+T  + L  L+L F D RL  L FR+RARN+P+TL++ E+Q WLEHR++ L   +
Sbjct: 241 MKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQRWLEHRREALNPEK 300

Query: 433 IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           +++Y  +L++L  +Y+ D+ K  L+ AL++Y + ++ 
Sbjct: 301 VQDYVLQLEALYNQYEDDKEKLALLKALFDYARDLVS 337


>gi|149914802|ref|ZP_01903332.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b]
 gi|149811595|gb|EDM71430.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b]
          Length = 459

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 116/471 (24%), Positives = 201/471 (42%), Gaps = 33/471 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV YD ET G     D+P QFA +  D  + + +   +  C+ A   LP P+A+ +T ++
Sbjct: 3   FVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNI-RCRLAPHILPSPQALVVTRVS 61

Query: 65  PQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           P +     +    EFS+++ +F         +GYN ++FD+   R  FY+N   +   + 
Sbjct: 62  PDQLTDPNLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYATQ 121

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGN+R+D+L  + A YA  PD   WP+ D G  SFKL  LA ANGI   NAHDA  DV 
Sbjct: 122 FNGNTRFDILPAVYAAYARQPDLFVWPTDDTGRRSFKLDRLAPANGINAHNAHDALGDVE 181

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  LI  + P L+  L D  +K +++    +++  P   V+  FG     + +   
Sbjct: 182 ATIHIARLIATRSPALWSELIDNAHKARVQA--KLESFRPYELVT-RFGGGEPRSYMGCF 238

Query: 243 VAWHPRYKDSVIGCNLS-GDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
             +           +L   D   F +     +   +           P  I+ V  NK P
Sbjct: 239 CGYSHGNSARAAFFDLDAADPSDFLEASDEAIFAAV--------DATPKIIRGVSTNKAP 290

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            ++       EH  R  +                 +     A + +   +  + V+ Q+Y
Sbjct: 291 AILEHTAPSAEHLRRAAVIANAPEFR-------QRVGAALAARFVEDPDAPPKPVERQIY 343

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
             F+++ D+Q++    R A  +   +    SD RL +L  R  A   P  L+ KE + + 
Sbjct: 344 GEFYSNADKQLLQEFQRAAWPRRQEIVASLSDPRLRQLGRRLVAFYSPELLNAKEAELFK 403

Query: 422 EHRKKMLTRS--------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
            + ++  +            E+ +  L+ L      +  +   ++A+  +L
Sbjct: 404 CYLREKWSAPDVPETEWMTFEKGEAALRDLRAAGAAETTE---LDAIASFL 451


>gi|213580552|ref|ZP_03362378.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 342

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 168/342 (49%), Positives = 241/342 (70%), Gaps = 1/342 (0%)

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
           RWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADVYAT+A+
Sbjct: 1   RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYATIAM 60

Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
             L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +AP+AWHP
Sbjct: 61  AQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHP 120

Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPID 307
             +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP+L   +
Sbjct: 121 ENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQAN 180

Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFA 366
             + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QLYDGFF+
Sbjct: 181 TLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQLYDGFFS 240

Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK 426
           D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR++
Sbjct: 241 DADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQ 300

Query: 427 MLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           +LT   +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 301 VLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 342


>gi|33519912|ref|NP_878744.1| exonuclease I [Candidatus Blochmannia floridanus]
 gi|33504257|emb|CAD83520.1| exodeoxyribonuclease I [Candidatus Blochmannia floridanus]
          Length = 501

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 190/488 (38%), Positives = 283/488 (57%), Gaps = 20/488 (4%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+IYDYETFG + ALDRPAQFA +RV+     +E  EVFFC+  +DYLP+PE+V IT
Sbjct: 7   KPTFLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNPESVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP   L +G++E +F+ +I Q F+VPNTCI+GYNNI FDD +SRNIFYRNFYD Y+WS
Sbjct: 67  GITPYDTLSNGLLEPQFAYQISQKFNVPNTCILGYNNISFDDEFSRNIFYRNFYDPYKWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + +GNSRWDLL V+RA Y+  P GIQWP       SF+L DL LAN I+H+NAHDA +D+
Sbjct: 127 YHHGNSRWDLLPVLRAFYSLYPTGIQWPINSKKKVSFRLTDLTLANSIQHLNAHDATSDI 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR-SNTALI 240
           +ATL ++ LI+  +P+LF++LY++R KNQL+K+I++ +M PL+H+S        +    +
Sbjct: 187 FATLEIMKLIKYTQPQLFQFLYNHRTKNQLQKIINLNSMKPLIHISNKINNKYNNFIHFL 246

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNK 299
            P+  HP   + +I  NL   + +  +L+   L + +  +   +  L+  +P++ + LN 
Sbjct: 247 LPITLHPNNHNVLITYNLLNKLDILWNLNINTLYQNIKDNQQCIYNLLKQIPLQLIRLNS 306

Query: 300 CPILMPIDYC--KKEHFERWGIDHKRCLENLTLLRQQTNLRDR-------------FKAI 344
           CPI +PI         F+           +L  L +     +               ++ 
Sbjct: 307 CPIFIPITVLQENNNIFKYTSELLSDYQNHLKNLHEIKQKINYTHLQQKIKSFYVIIESY 366

Query: 345 YNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLST---LNLPFSDRRLPELFF 401
            NK     S  VD+QLY+GFF   D +I+ +I      Q  +   +N   +D RL  L F
Sbjct: 367 LNKIKNKLSTHVDNQLYNGFFQYSDCRIIKQIRNITDVQKLSTIHINSNSNDNRLKSLLF 426

Query: 402 RYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461
            YR+RNFPHTL+ +EK+ W  ++K ML      +      +     + +  K  L+++L 
Sbjct: 427 FYRSRNFPHTLNSEEKKIWTTYKKNMLLNQDKYKNYLHHINYLLFNQNNIKKINLLSSLK 486

Query: 462 EYLQWVIP 469
           +Y  +   
Sbjct: 487 KYYTYFYN 494


>gi|213621019|ref|ZP_03373802.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 275

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 161/267 (60%), Positives = 201/267 (75%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +A
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDL 268
           P+AWHP  +++VI  +L+GD+    +L
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLEL 275


>gi|115524481|ref|YP_781392.1| exodeoxyribonuclease I [Rhodopseudomonas palustris BisA53]
 gi|115518428|gb|ABJ06412.1| Exodeoxyribonuclease I subunit C [Rhodopseudomonas palustris
           BisA53]
          Length = 490

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/469 (20%), Positives = 176/469 (37%), Gaps = 27/469 (5%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV +D ET G     D+   FA +R D    + +  EV   +     +P P A+    ++
Sbjct: 3   FVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEVR-SRLLPHVVPHPSALRTNRLS 61

Query: 65  PQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            ++ +   +    E  R I +     +    +GYN+IRFD+   R+  ++  + +Y  S 
Sbjct: 62  IERLIDGTLPSHYEMVRAIQRTLLAWSPSIFVGYNSIRFDEEMLRHALFQTLHPAYLTSN 121

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            NGN R D L ++ A    SP  +  P   +G   F+L  LA  N ++H  AHDA ADV 
Sbjct: 122 -NGNCRADALGLIMAAATLSPACLVVPLGPEGRPIFRLDQLASVNDLKHDQAHDAMADVA 180

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           ATL L  L+RE+ P+L++    +  K  +   ++ ++          F ++++  A +  
Sbjct: 181 ATLDLCRLVRERAPELWQRFIRFSKKATVGDFVESEDG----FFLTEFFSNQAYHAPVVC 236

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +   P   +  +   L         +    L   L           P P++ + +N  P 
Sbjct: 237 LGPDPDQPNGRLCLRLDVPPEELALMPDEALQAYLSAK--------PSPVRRLRINASPT 288

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQL 360
           L              G D     +    L++    R R  ++Y   +   + S  V+ Q+
Sbjct: 289 LTAFHDAPDLMLN--GADLDELEDRARRLKEDAAFRSRIISLYVAVRESFAPSLHVEGQI 346

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDG     D + +      +  +  ++     D RL     R         L    K   
Sbjct: 347 YDGLLGPDDERRIADFHEASWLEALSIVRDLDDERLRIFGRRLIYFGGRSVLPSDLKLIV 406

Query: 421 LEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
                  L  +      +++   + + L      D     ++     YL
Sbjct: 407 ERDLTDRLVDNAAGNFTLQQALEETERLLNGEGIDADG--ILPGYRTYL 453


>gi|260072659|gb|ACX30556.1| exonuclease I [uncultured SUP05 cluster bacterium]
          Length = 422

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 152/424 (35%), Positives = 240/424 (56%), Gaps = 15/424 (3%)

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           P PEA  +TGI+PQ   + GV+E EF ++I+  F+ PNTCI+GYN+IRFDD ++R   YR
Sbjct: 2   PAPEACAVTGISPQDCEQKGVIEHEFIKKINSEFTTPNTCIVGYNSIRFDDEFTRYTLYR 61

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEH 171
           NF D Y W W +GN+RWD+LDV+R  YA   D  ++W   ++G   FKL  L+LANGIEH
Sbjct: 62  NFIDPYAWHWKDGNTRWDILDVVRLCYALKKDNSLKWVHNEEGKPVFKLDQLSLANGIEH 121

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231
            NAHDA ADV AT+ +  +I+E +P+LF+Y +  R K  +   I +    P++H SGM+ 
Sbjct: 122 ANAHDALADVRATIGIAKIIKETQPQLFDYAFSLREKKTVEGKIKL--FEPMLHTSGMYP 179

Query: 232 ASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPV 290
           A+ S T L   +A+HP Y D  I  NL  D  +  +LD  +L   +FT   EL  G+  +
Sbjct: 180 ATLSCTRLAVALAYHPEYNDRAIVFNLDQDPSILLELDVEELKTLMFTKQSELPDGVKRL 239

Query: 291 PIKEVHLNKCPILMPIDYC-KKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NK 347
            IK++  NK P+ +P  Y    +  E+  ID    ++ L  ++   +  ++       N 
Sbjct: 240 EIKDLIFNKSPMFVPNVYKLDPKVVEQLQIDMDTRMQRLDFIKDNQSAINKVVQDLYRND 299

Query: 348 PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN 407
              + + DVD  LYDGF  + D++I +++ R + ++L   +  F D++L  L   ++ARN
Sbjct: 300 KERAPTVDVDQALYDGFMDNADKRIGEQVQRLSVDELKKFHPKFKDQKLSTLLMHFKARN 359

Query: 408 FPHTLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYE 462
           +P++L+E E +DW E  +  +         +++Y  ++  +  ++     KE L   L  
Sbjct: 360 YPNSLTEDEAEDWFETVQGRIQAGENGYTSLDDYYQRITLMQKQH---PEKETLWKQLES 416

Query: 463 YLQW 466
           Y + 
Sbjct: 417 YAES 420


>gi|254451927|ref|ZP_05065364.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
 gi|198266333|gb|EDY90603.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
          Length = 464

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 111/469 (23%), Positives = 196/469 (41%), Gaps = 27/469 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F  +D ET G   A D+P QFA +  D  +++IE  ++  C+ A   +P P A+ +TG+
Sbjct: 2   NFAFFDLETTGVSPAFDQPLQFAAILTDSDFKEIERVDMR-CRLAPHIIPSPHALAVTGL 60

Query: 64  TPQKALRDGVVE-AEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            P + +   + E  EF++ + +  S  +  I  G+N+IRFD+   R  FY+N       +
Sbjct: 61  RPAELIDPALPELFEFTQSLTELVSRWSPAIWTGFNSIRFDEEMLRQAFYQNLQAEVFAT 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             NGN+R+D++  +  ++    D ++WP  + G   FKL  LA  NG E  NAHDA  DV
Sbjct: 121 QFNGNTRFDIMTAVFGVWHRHRDLLEWPVDETGKVRFKLDRLAPLNGFEGHNAHDALGDV 180

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            A + +  LI ++ P L+  L   R+K  ++  ++  +   LV   G FG          
Sbjct: 181 EAIIHIAQLIAQRDPALWTELLASRDKGYVKARLERLSPLELV---GRFGGGPPKAITGC 237

Query: 242 PVAWHPRYKDSVIGCNLS-GDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
              +  +  +     +L   D     D         L          VP  I+ + +NK 
Sbjct: 238 LCGYSSKNANQAFFFDLDAADPADLIDASDDTFVAAL--------EAVPWAIRSLTINKA 289

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           P+L+       EH  R  +  +              +     A Y     +    V+ Q+
Sbjct: 290 PVLLEPAATTDEHERRARLIAEAPQFR-------ERVVQTMAARYPTKPDAEPIAVEKQI 342

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           ++GF++  D++ +         Q   +   F D RL +L  R  A      LSE+E++ +
Sbjct: 343 FNGFYSWADKERLKVFQGADWPQRQEIVATFDDSRLRQLGRRLVAFYAHDLLSEEEQRQY 402

Query: 421 LEHRKKML-----TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
            E             +     K   Q+++   +       ++  +  +L
Sbjct: 403 GEWLHGRWQAASRLETEWMTTKKARQAIAEMRESSNYDNLMLEEIEAFL 451


>gi|303256767|ref|ZP_07342781.1| exodeoxyribonuclease I [Burkholderiales bacterium 1_1_47]
 gi|330999116|ref|ZP_08322837.1| exonuclease [Parasutterella excrementihominis YIT 11859]
 gi|302860258|gb|EFL83335.1| exodeoxyribonuclease I [Burkholderiales bacterium 1_1_47]
 gi|329575505|gb|EGG57044.1| exonuclease [Parasutterella excrementihominis YIT 11859]
          Length = 494

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 123/489 (25%), Positives = 222/489 (45%), Gaps = 25/489 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  ++ YDYETFG +   DRP Q+   R D  +  I  + V + + ADDY+P P +  +T
Sbjct: 8   STSYLWYDYETFGTEARKDRPVQYGSFRTDTNFNIIGQSMVLYAQLADDYIPSPGSSLVT 67

Query: 62  GITPQKALRDG--VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           GITP   + +   + EA+F++ I      P T  IGYNN  +DD  +R +F+RN   +Y 
Sbjct: 68  GITPMSLMDEENALAEADFAKVIRDEMGKPGTITIGYNNRNYDDEMTRFMFWRNLLPAYD 127

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             +  G  R+D+  ++ A+YA +P  + WP+++DG   FKL  L  AN + H +AHDA +
Sbjct: 128 TEYGEGRGRFDVFLLVIAVYAVAPQILNWPTKEDGTVCFKLDRLTPANNLPHRHAHDASS 187

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           D +ATL L  LI  K P+L+EY       +++ +L+      PL++V       R     
Sbjct: 188 DAFATLQLAKLIASKNPRLWEYALSISKSDKIVELL--NEKRPLLYVDRYSLHHRRGLRP 245

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF-TSHDELKGLVPVPIKEVHLN 298
           + P+  +P  ++  I  +LS D      +    + +R F T   + +G+ P+P   +   
Sbjct: 246 VMPLFENPSVRNEWICWDLSADPNEMWAITEKDMKERSFVTREQKEQGIKPLPFVRIKTK 305

Query: 299 KCPILM---------PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY 349
           K P LM               +     +  +  + L +   L +  +L         + +
Sbjct: 306 KQPFLMKGMSVWITKNGQGLFEHPAAYYSENASKILASADRLSELLSLFMALADRKAEEH 365

Query: 350 TSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLP--FSDRRLPELFFRYRARN 407
            +     ++    GF ++ D + M       PE+++       F    L EL   +  RN
Sbjct: 366 -AKDIPEEALYSGGFPSNSDARKMATFRALPPEEMADAFDRLEFDREDLAELTLYFMGRN 424

Query: 408 FPHT-LSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALY 461
           +P   L+ + ++ W  H+   L +         ++  +L+ +      DE    ++  + 
Sbjct: 425 YPEYALTPETERLWRLHKYNKLVKGLGGARTFTQFYEELEEVRA--GADEHGLEILEDVE 482

Query: 462 EYLQWVIPK 470
            Y++ +  +
Sbjct: 483 GYVENLRSE 491


>gi|116515281|ref|YP_802910.1| SbcB [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116257135|gb|ABJ90817.1| exodeoxyribonuclease I [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 475

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 160/464 (34%), Positives = 249/464 (53%), Gaps = 5/464 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               + YDYETFG++VALD+ +QF  +  D ++  I    + FC P  DYLPDPEA+ IT
Sbjct: 7   KKKIIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDPEAILIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I PQ   + G+ E   S++IH  FS  N CIIGYNNI FD+  +RNIFYRN +D Y WS
Sbjct: 67  KILPQYTYKYGLNEYFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRNLFDPYEWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N N  WD+L+++RA Y F P  + W    +G  SFKL D+ L N I+H++ HDA +DV
Sbjct: 127 WKNNNFSWDILNILRAFYIFLPKSMCWYYNSNGTVSFKLSDITLVNNIKHIHIHDAYSDV 186

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT  +   +  K    F YLY    K  +   +      P  ++S  FG+   N   I 
Sbjct: 187 YATFLITKYLFSKYKNFFLYLYMISKKKYISSFLLNNINKPFFYISSFFGSINYNFGCIM 246

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
            +  HP YK++++  +LS D +   +     L K+  T    +K L  V IK V ++K P
Sbjct: 247 YIGLHPLYKNNIVIFDLSSDFKKIFN-----LYKKYSTCLISIKKLFNVGIKVVSISKSP 301

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           +    +    +H  R  ID+ +C +N  LL+    +++   + ++        D+D  LY
Sbjct: 302 LFFSYNSVSLKHCIRLNIDYLKCQKNFFLLKNNFLIKNWIISCFSYKKKEKINDIDLMLY 361

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           + FF + DR ++  I +  P++    +  F D R+ +LFFR +ARNF   L+  E + W 
Sbjct: 362 NNFFLNSDRCLLSFIHKNEPKKWMGWSANFLDNRIKKLFFRLKARNFIKLLNFNEIKKWQ 421

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
            + K  +   ++EEY  K++    ++  ++    L+  L++Y++
Sbjct: 422 FYCKNKINFIKLEEYFEKIKKFQLKFNKNDKNFILLEDLFKYIK 465


>gi|299132766|ref|ZP_07025961.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2]
 gi|298592903|gb|EFI53103.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2]
          Length = 473

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 103/470 (21%), Positives = 177/470 (37%), Gaps = 27/470 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV +D ET G     D+   FA +R D    +I   E    +     LP P A+   G+
Sbjct: 5   SFVFFDTETTGLKHGFDQIVHFAAIRTDANLNEIGRFEA-RSRLLPHVLPHPAALRTNGL 63

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
              + L   +    +  R I Q     +    +GYN++RFD+   R+  ++  + +Y  S
Sbjct: 64  PIGRLLDGSLPSHYDMVRSIRQRLLSWSPSIFLGYNSVRFDEEMLRHALFQTLHPAYLTS 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             N  SR D+  ++ A  A SP  +  P   +G + F+L+ LALANG+    AHDA +D 
Sbjct: 124 NHNN-SRADVWGLVMAAAAVSPACLNVPIGPEGRSIFRLEQLALANGVAQEQAHDALSDA 182

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            ATL L  L+ ++ P+L++    +  K  +   ++ ++   L      F A+++  A + 
Sbjct: 183 IATLELCRLVHQRSPELWQRFVRFSKKATVADFVEAEDGFML----TEFFANQAYHAPVV 238

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
            +   P   +     NL+ D   F  +   +L   L           P P++ + +N  P
Sbjct: 239 CIGRDPDQSNGRFCLNLNRDADRFAAMTDDELRAEL--------AQKPCPVRRLRINAAP 290

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQ 359
            L       +   +   I           ++    L +R  + Y   +   S S+  + +
Sbjct: 291 TLTAFYDAPEVMLDGLDI--DAVEARARRVKSDPALCNRLVSAYTSTREPRSPSRHAEER 348

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           LYDGF    D   M             +     D RL     R         L E  + +
Sbjct: 349 LYDGFPGPQDEARMIEFHDADWTDRLAIVQSLDDERLRSFGLRLLYFEARSVLPEALRLE 408

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
                   L  +      +E+    +     +   D     L+     YL
Sbjct: 409 LDYALSGRLVDAEAGGLTLEQALRAIDEAPSDDASDAAG--LLTGYRTYL 456


>gi|213025919|ref|ZP_03340366.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 338

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 163/338 (48%), Positives = 237/338 (70%), Gaps = 1/338 (0%)

Query: 132 LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191
           +DVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADVYAT+A+  L+
Sbjct: 1   MDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYATIAMAQLV 60

Query: 192 REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKD 251
           + ++P+LF+YLY +R+K++L  LID+  M PLVHVSGMFGA R NT+ +AP+AWHP  ++
Sbjct: 61  KTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRN 120

Query: 252 SVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKK 311
           +VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP+L   +  + 
Sbjct: 121 AVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQANTLRP 180

Query: 312 EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDR 370
           E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QLYDGFF+D DR
Sbjct: 181 EDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQLYDGFFSDADR 240

Query: 371 QIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTR 430
             M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+++LT 
Sbjct: 241 AAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTP 300

Query: 431 SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 301 EFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 338


>gi|145207002|gb|ABP37869.1| EpsE [Pseudoalteromonas sp. SM9913]
          Length = 356

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 171/350 (48%), Positives = 236/350 (67%), Gaps = 2/350 (0%)

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
           ++ G+VEAEF  +IH  FSVPNTC+ GYN+IRFDD  SR  FYRNFYD Y   + N NSR
Sbjct: 1   MQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYKNNNSR 60

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
           WD++D++RA YA  P+GI+WP ++DG+ SFKL+ L +ANGIEH  AHDA +DV AT+AL 
Sbjct: 61  WDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTATIALA 120

Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
            LI+EK+PKL+ + +  RNK  L +L+D+ NMTPLVH S    A++  T  +AP+++HP 
Sbjct: 121 KLIKEKQPKLYHFFFSLRNKKALAELVDVFNMTPLVHTSSRIPATQGCTTWVAPMSFHPV 180

Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPID 307
            K++VI  +L+ + +V  DL+  QL KRL+T   +L +G +PV +K VHLNKCPIL P  
Sbjct: 181 NKNAVICFDLTQNPQVLLDLNVEQLRKRLYTKRIDLAEGDLPVGLKLVHLNKCPILAPAK 240

Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLYDGFFA 366
               E+  R GID ++CL NL +L+  T LRD+   ++N+    S++ +VD  LYDGF +
Sbjct: 241 TLLPENAARLGIDREQCLANLAILKANTELRDKVTEVFNEQGDYSATTNVDYLLYDGFTS 300

Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
             D+     I    PE L++L L F D +   L FRYRARN+P TL+  E
Sbjct: 301 HADKAKFAIIRDAKPEDLASLKLEFEDPKFNTLLFRYRARNWPETLNPPE 350


>gi|27375179|ref|NP_766708.1| exonuclease I [Bradyrhizobium japonicum USDA 110]
 gi|27348315|dbj|BAC45333.1| exonuclease I [Bradyrhizobium japonicum USDA 110]
          Length = 468

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 104/472 (22%), Positives = 181/472 (38%), Gaps = 28/472 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV +D ET G     D+   FA VR D    ++   E    +     LP P A+   G+
Sbjct: 2   SFVFFDTETTGLKRGFDQILHFAAVRTDENLNEVARFET-RSRLQPHVLPHPSALRTNGL 60

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
             +      +         I +     +    +G+N+IRFD+   R+  ++  Y +Y  S
Sbjct: 61  PIESLTDSSLPSHYTMVGDIRRTLISWSPAVFVGFNSIRFDEEMLRHALFQCLYPAYLTS 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D L ++ A  A SP  +  P  ++G  +F+LQ LA ANG+ H  AHDA +DV
Sbjct: 121 NHRNC-RADALSLVMAADAVSPAQLVVPVSEEGRRTFRLQQLAAANGVAHARAHDAMSDV 179

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            ATL L  L+  + P+L++    + NK  +   I++++      V   F   ++    + 
Sbjct: 180 LATLELSRLVYRRSPELWQRFVRFSNKATVADFIEVEDG----FVLTEFFGGQAYHTSVV 235

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
            +   P   +  +  +L+ DM     +  ++L   L           P PI+   +N  P
Sbjct: 236 CIGRDPDQANGRLCLSLNEDMGRLAAMSDLELQVHLTQK--------PSPIRRFRINAAP 287

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQ 359
            L       +   +  G       +   L++  T L  R  A Y   +   + S  ++ +
Sbjct: 288 TLTAFYDAPEHMLD--GGSMGATGDRACLMKADTGLCARLVAAYMAAREPYALSPHLEER 345

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +Y GF    D   +        E    +     D RL     R         L E  + +
Sbjct: 346 IYSGFPGPADEARIAAFHDARWEDRLAIVQGMEDERLRWFGLRLIYFEARSVLPEPTRLE 405

Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
              +    +T        I++   + + + GE+   +    L+     YLQ 
Sbjct: 406 VERYLTDQMTGDGSGCLTIDQAMAETERVLGEFASPDD---LLIQYRTYLQD 454


>gi|254510953|ref|ZP_05123020.1| exodeoxyribonuclease I [Rhodobacteraceae bacterium KLH11]
 gi|221534664|gb|EEE37652.1| exodeoxyribonuclease I [Rhodobacteraceae bacterium KLH11]
          Length = 469

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 110/471 (23%), Positives = 195/471 (41%), Gaps = 30/471 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F  +D ET G   A D+P QFAG+  D   E++E  ++  C+ +   LP P A+ +TG++
Sbjct: 2   FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEVERIDI-RCRLSPHILPAPWALAVTGVS 60

Query: 65  PQKALRDGVVE-AEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           P       +    EFS+ +             GYNNI FD+   R +FY+N + +   + 
Sbjct: 61  PGMLSNPNLPSAFEFSQEVSSLIHRWGPATWTGYNNIAFDEQMLRQMFYQNLHPNLYLTQ 120

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +GN R D++ ++ A +  + D + WP+ + G  +FKL  LA ANG    N HDA ADV 
Sbjct: 121 MDGNDRMDIMKLVYATWVLANDALTWPTDEAGKITFKLDQLAPANGFVSNNFHDALADVE 180

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+ +  LIR++ P ++      R+KN ++ ++    +  L+     FGA+       A 
Sbjct: 181 ATINIAKLIRDRAPDVWVQSLRNRSKNNVQDIMQSGQVLTLIE---RFGATPPRAYRGAY 237

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +P  ++++   +L        D           ++        P  ++ V +N  P 
Sbjct: 238 AGQNPDNRNALALMDLDLVDPNTLDPTDA-------SAIANAVSASPKTVRTVAINNAPN 290

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY--TSSSQDVDSQL 360
           L  +     +            L     LR   +L+        + +   S    V+ ++
Sbjct: 291 LFEVPIDDSD-----------LLNRAEDLRGNHDLQTALGNALAERFADRSEPDQVEQKI 339

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y GF++  D++ +++    +  +   +   F DRRL  L  R    N P  LS   +  W
Sbjct: 340 YAGFYSTDDKKRLNQFEFASWAKRIEIAQAFEDRRLQWLASRLIYLNEPSLLSRYAQDYW 399

Query: 421 LEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWV 467
            +   +             ++     L+            + AL EY   +
Sbjct: 400 KDAIDQRWQNDDPNPEWTTIEHASRQLAEIADQGVLSIHDLQALKEYYSSL 450


>gi|330888491|gb|EGH21152.1| exonuclease I [Pseudomonas syringae pv. mori str. 301020]
          Length = 363

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 141/360 (39%), Positives = 214/360 (59%), Gaps = 9/360 (2%)

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
           F+D Y   W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L  ANGI+H  
Sbjct: 1   FFDPYAREWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQ 59

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
           AHDA +DV AT+AL  LIREK+PKL++YL+  R+K ++++ + +  M PLVH+SG F A+
Sbjct: 60  AHDALSDVRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAA 117

Query: 234 RSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPI 292
           R+   ++ P+AWHP  ++++I C+L  D       D+  L +RL+T H+ L +G +PVP+
Sbjct: 118 RNYLGVVLPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPL 177

Query: 293 KEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTS 351
           K +H+N+CP++ P+   + E  +R  +D        T L +     +D+   +Y K   +
Sbjct: 178 KLLHINRCPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFA 237

Query: 352 SSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
           +S+D + QLYDGF  D DR++ +++ +  PEQL+    PF D RLPEL FRYRARNFP T
Sbjct: 238 ASEDPEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDT 297

Query: 412 LSEKEKQDWLEHRKKMLTRSR--IEEYKNKLQSLSGEYKGD--EGKEGLINALYEYLQWV 467
           LS +E+Q W +  ++ L+              +   E        +  ++    +Y Q +
Sbjct: 298 LSSEEQQRWQDFCQQRLSDPERGAPNTLKDFATALAECSLSAAPEQLEVLRQWQDYAQAL 357


>gi|297171091|gb|ADI22103.1| exonuclease I [uncultured Planctomycetales bacterium HF0200_11L05]
          Length = 468

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 103/474 (21%), Positives = 184/474 (38%), Gaps = 27/474 (5%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++  D ET G D+   +  Q   +  D     +E     F K     +P PEA  +   T
Sbjct: 10  YIFTDTETTGLDINFSQILQVGSLLTDENL-VVEKEHSLFSKLLPWIVPSPEAFLVHKKT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            +    D     E   ++ + +       N   I YN  RFD+   R  FY      Y  
Sbjct: 69  -ECLNEDSPTHYEMMCQLREDWLNWSINKNPVFITYNGHRFDEELFRRQFYWCLLPPY-I 126

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +   G +R DL+   + +  F P+ +  P  ++   S KL D A AN I  +NAHDA AD
Sbjct: 127 TNTGGATRLDLMYTFQLVANFFPNSLTVPMNEENGISLKLTDWAEANKISSINAHDAVAD 186

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
            Y  + L  LI EK P+++       +K+   +LI  +    +  V          T  +
Sbjct: 187 CYLMVNLSRLIAEKVPEVWNSSLRGSSKDGNLRLIQSEPFAMIGEV----IRKSRFTYPV 242

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
                + + ++ V   +L  D     +L   +L +++  +           I++V +NK 
Sbjct: 243 TFCGQNNKMQNEVAVADLYFDPDTLDELSDSELLEQISNAGT--------AIRKVRINKS 294

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDS 358
             +M          +   I  ++  E    +R  T L+ R   +   N+      + V+ 
Sbjct: 295 LPIMNA-LDIPSIHDTLDIPFEQLEERANKIRNNTKLQSRISELLTNNQIQYPPPKYVEQ 353

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
            +Y GF +  D   M+R   T  +  S L   F D R  EL  R    +      ++  +
Sbjct: 354 SVYSGFPSKEDELWMERFHATPWQDRSKLIDGFEDSRYRELAERLICVHETAGTPDQSLK 413

Query: 419 DWLEHRKKMLTRS----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            +     + L+       I+   +K++ L  + + +E K  ++  L + L+ + 
Sbjct: 414 RYNTFISQRLSDKGPWLNIDNTLSKIEELLKKEEDEERK-NILIQLEKKLKKMA 466


>gi|154705994|ref|YP_001424798.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111]
 gi|154355280|gb|ABS76742.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111]
          Length = 458

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 108/475 (22%), Positives = 183/475 (38%), Gaps = 36/475 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ YD ET G +   D+  QFA +R D    ++   E+   +   D +P PEA+ I  
Sbjct: 6   KTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEAMIIHR 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            +  + L  G  E E  R IHQ  + P T  +GYN + FDD + R  FYRN    Y   +
Sbjct: 65  FSIDQML-SGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPYTHQY 123

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           DN   R DL  +    Y F P+ + WP   D     KL++L+ AN +    AH+A  DV 
Sbjct: 124 DNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNAMVDVE 179

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH--------VSGMFGASR 234
           A++AL  L+  ++      +  +  K + ++L  +                + G+FGA  
Sbjct: 180 ASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVFGAQL 239

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
           +  A +  +  H  YK+      L  D           + +  +                
Sbjct: 240 AYQAPVICLGQHNHYKNQ--CLWLRLDREELLSTTVDSIPQTTYA-------------IR 284

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
             + + PI++P         E          + L    Q  +    +   +  P   +  
Sbjct: 285 KKMGEQPIVLPASDHYLRLSEERLQLATESKKWLESHSQLFHHICDYYQNFTYPKVPNLD 344

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
              +    GF    +  +  R     P +   + L F +       FR   R++P  L  
Sbjct: 345 PDAALYEVGFPTPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLIERHYPDYLPA 404

Query: 415 KEKQDWLEHR----KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
           + +   L       ++ LTR       N+++SL  E   D+ +  L++ L  YL+
Sbjct: 405 ETQARSLGLCDYRGERRLTRET---AFNQIESLKQEKSLDQEQLRLLDELDHYLR 456


>gi|29654660|ref|NP_820352.1| exonuclease [Coxiella burnetii RSA 493]
 gi|161831411|ref|YP_001597205.1| exonuclease [Coxiella burnetii RSA 331]
 gi|165924153|ref|ZP_02219985.1| exonuclease [Coxiella burnetii RSA 334]
 gi|29541928|gb|AAO90866.1| exodeoxyribonuclease I [Coxiella burnetii RSA 493]
 gi|161763278|gb|ABX78920.1| exonuclease [Coxiella burnetii RSA 331]
 gi|165916402|gb|EDR35006.1| exonuclease [Coxiella burnetii RSA 334]
          Length = 458

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 108/475 (22%), Positives = 183/475 (38%), Gaps = 36/475 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ YD ET G +   D+  QFA +R D    ++   E+   +   D +P PEA+ I  
Sbjct: 6   KTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEAMIIHR 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            +  + L  G  E E  R IHQ  + P T  +GYN + FDD + R  FYRN    Y   +
Sbjct: 65  FSIDQML-SGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPYTHQY 123

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           DN   R DL  +    Y F P+ + WP   D     KL++L+ AN +    AH+A  DV 
Sbjct: 124 DNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNAMVDVE 179

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH--------VSGMFGASR 234
           A++AL  L+  ++      +  +  K + ++L  +                + G+FGA  
Sbjct: 180 ASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVFGAQL 239

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
           +  A +  +  H  YK+      L  D           + +  +                
Sbjct: 240 AYQAPVICLGQHNHYKNQ--CLWLRLDREELLSTTVDSIPQTTYA-------------IR 284

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
             + + PI++P         E          + L    Q  +    +   +  P   +  
Sbjct: 285 KKMGEQPIVLPASDRYLRLSEERLQLATESKKWLESHSQLFHHICDYYQNFTYPKVPNLD 344

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
              +    GF    +  +  R     P +   + L F +       FR   R++P  L  
Sbjct: 345 PDAALYEVGFPTPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLIERHYPDYLPA 404

Query: 415 KEKQDWLEHR----KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
           + +   L       ++ LTR       N+++SL  E   D+ +  L++ L  YL+
Sbjct: 405 ETQARSLGLCDYRGERRLTRET---AFNQIESLKQEKSLDQEQLRLLDELDHYLR 456


>gi|212212262|ref|YP_002303198.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212]
 gi|212010672|gb|ACJ18053.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212]
          Length = 458

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 109/475 (22%), Positives = 184/475 (38%), Gaps = 36/475 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ YD ET G +   D+  QFA +R D    ++   E+   +   D +P PEA+ I  
Sbjct: 6   KTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEAMIIHR 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            +  + L  G  E E  R IHQ  + P T  +GYN + FDD + R  FYRN    Y   +
Sbjct: 65  FSIDQML-SGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPYTHQY 123

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           DN   R DL  +    Y F P+ + WP   D     KL++L+ AN +    AH+A  DV 
Sbjct: 124 DNFCRRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNAMVDVE 179

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH--------VSGMFGASR 234
           A++AL  L+  ++      +  +  K + ++L  +                + G+FGA  
Sbjct: 180 ASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVFGAQL 239

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
           +  A +  +  H  YK+      L  D           + +  +                
Sbjct: 240 AYQAPVICLGQHNHYKNQ--CLWLRLDREELLSTTVDSIPQTTYA-------------IR 284

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
             + + PI++P         E          + L    Q  +    +   +  P   +  
Sbjct: 285 KKMGEQPIVLPASDRYLRLSEERLQLATESKKWLESHSQLFHYICDYYQNFTYPKVPNLD 344

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
              +    GF A  +  +  R     P +   + L F +       FR   R++P  L  
Sbjct: 345 PDAALYEVGFPAPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLIERHYPDYLPA 404

Query: 415 KEKQDWLEHR----KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
           + +   L       ++ LTR       N+++SL  E   D+ +  L++ L  YL+
Sbjct: 405 ETQARSLGLCDYRGERRLTRET---AFNQIESLKQEKSLDQEQLRLLDELDHYLR 456


>gi|153209510|ref|ZP_01947415.1| exonuclease [Coxiella burnetii 'MSU Goat Q177']
 gi|212218768|ref|YP_002305555.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154]
 gi|120575335|gb|EAX31959.1| exonuclease [Coxiella burnetii 'MSU Goat Q177']
 gi|212013030|gb|ACJ20410.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154]
          Length = 458

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 108/475 (22%), Positives = 183/475 (38%), Gaps = 36/475 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ YD ET G +   D+  QFA +R D    ++   E+   +   D +P PEA+ I  
Sbjct: 6   KTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEAMIIHR 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            +  + L  G  E E  R IHQ  + P T  +GYN + FDD + R  FYRN    Y   +
Sbjct: 65  FSIDQML-SGKAEIEAIREIHQSVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPYTHQY 123

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           DN   R DL  +    Y F P+ + WP   D     KL++L+ AN +    AH+A  DV 
Sbjct: 124 DNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNAMVDVE 179

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH--------VSGMFGASR 234
           A++AL  L+  ++      +  +  K + ++L  +                + G+FGA  
Sbjct: 180 ASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVFGAQL 239

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
           +  A +  +  H  YK+      L  D           + +  +                
Sbjct: 240 AYQAPVICLGQHNHYKNQ--CLWLRLDREELLSTTVDSIPQTTYA-------------IR 284

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
             + + PI++P         E          + L    Q  +    +   +  P   +  
Sbjct: 285 KKMGEQPIVLPASDRYLRLSEERLQLATESKKWLESHSQLFHHIFDYYQNFTYPKVPNLD 344

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
              +    GF    +  +  R     P +   + L F +       FR   R++P  L  
Sbjct: 345 PDAALYEVGFPTPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLIERHYPDYLPA 404

Query: 415 KEKQDWLEHR----KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
           + +   L       ++ LTR       N+++SL  E   D+ +  L++ L  YL+
Sbjct: 405 ETQARSLGLCDYRGERRLTRET---AFNQIESLKQEKSLDQEQLRLLDELDHYLR 456


>gi|90409311|ref|ZP_01217406.1| putative exonuclease I [Psychromonas sp. CNPT3]
 gi|90309579|gb|EAS37769.1| putative exonuclease I [Psychromonas sp. CNPT3]
          Length = 361

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 127/359 (35%), Positives = 211/359 (58%), Gaps = 3/359 (0%)

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
           YRNF D Y+  W NGNSRWD++D++RA YA  P+GI WP  +D   SF+L+ L+  N + 
Sbjct: 1   YRNFADPYQREWKNGNSRWDIIDLVRACYALRPEGINWPVDNDDVPSFRLELLSKENALA 60

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
           H  AHDA +DVYAT+A+  LI+EK+PKL+ Y ++ RNK  + + + + + TPL+HVSGMF
Sbjct: 61  HDQAHDAMSDVYATIAVAKLIKEKQPKLYNYYFNLRNKKTVLETLKVGSFTPLMHVSGMF 120

Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVP 289
            A +   + I P+  HP  K++VI  +L+ D+   + L   Q+ + +++   +L +G+  
Sbjct: 121 PALQGCISYILPICMHPTNKNAVIVVDLAKDLTNLESLSVEQIRQYMYSKTIDLPEGITR 180

Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY 349
             +K +HLNKCP + P     +   +  GID  +C ++L  +++   L D+  A+YN  +
Sbjct: 181 PALKLIHLNKCPFVSPAKTLSESRADELGIDRIQCRKSLNFIKENLALVDKLYAVYNTAH 240

Query: 350 TSSSQ-DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408
                   +  LY GFF   D+Q ++ +  +  + L+     F+D RL  L + YRARN 
Sbjct: 241 APKQGLCAEEMLYHGFFNQEDKQQIEDVKHSNWQVLANKTFHFNDARLKTLLWHYRARNA 300

Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           P T+SE+E+  W    +  +  +  ++Y  K+ +L+ E++ D  K  ++  L+ YLQ++
Sbjct: 301 PETMSEEEQDKWARECQAYVLDNT-QQYIEKIDALALEHQNDVAKIEILQKLHHYLQFL 358


>gi|320540911|ref|ZP_08040415.1| putative exonuclease I [Serratia symbiotica str. Tucson]
 gi|320029026|gb|EFW11201.1| putative exonuclease I [Serratia symbiotica str. Tucson]
          Length = 310

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 159/310 (51%), Positives = 219/310 (70%), Gaps = 2/310 (0%)

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           Y +SW NGNSRWDLLDVMRA YA  PDGI WP  +DG  SF+L+ L  ANG+EH  AHDA
Sbjct: 1   YAYSWQNGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHTQAHDA 60

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
            +DVYAT+A+   +++ +P+LF++L  YRNK++L  LIDI  +TPLVHVSGMFGA+R NT
Sbjct: 61  MSDVYATIAMAKQVKQAQPRLFDFLLQYRNKHKLNTLIDIAEVTPLVHVSGMFGAARGNT 120

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVH 296
           + +AP+AWHP  K++ I C+L+GD+     L++ QL +RL+T  D L     P+P+K VH
Sbjct: 121 SWVAPLAWHPVNKNAAIMCDLAGDLTPLLTLNADQLRERLYTRRDALTVDQPPIPLKLVH 180

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQD 355
           +NKCP+L P      E+ ER GID + C +NL LLRQ   +R++  A++ +      S D
Sbjct: 181 INKCPVLAPARTLLPENTERLGIDRRTCRQNLQLLRQHPQVREKVVALFAEAEPYKGSDD 240

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           VD++LYDGFF+D D+  M  I +T P+ L  L+L FSD R+ EL FR+RARN+P+TL+  
Sbjct: 241 VDARLYDGFFSDADKAAMKIIQQTKPQDLPALDLAFSDSRMKELLFRFRARNYPNTLNNA 300

Query: 416 EKQDWLEHRK 425
           E+Q WL++R+
Sbjct: 301 EQQRWLQYRQ 310


>gi|330983976|gb|EGH82079.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 551

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 127/502 (25%), Positives = 216/502 (43%), Gaps = 42/502 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFIT 61
               ++D ET G     D+  QFAGV +D +   I     V       D +P P A  +T
Sbjct: 6   QRLCVFDTETTGLSAHHDQIVQFAGVGLDPELNIIPGDEIVLDVLMRPDVVPSPGAFAVT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           GI+    ++ G+ E E +  I   F     T I GYN  RFDD   RN FYRN  D Y+ 
Sbjct: 66  GISISHLMQHGIPEFEAAGHIRNWFMRQEGTNITGYNTQRFDDEVIRNTFYRNMIDPYQH 125

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            WD GNSR D+L ++  ++A  P+ ++WP   DG  S KL ++   NGI   NAHDA+ D
Sbjct: 126 EWDKGNSRSDILRLVTMVFALRPEMLRWP-LKDGRYSMKLGEMCRENGISLDNAHDARFD 184

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT+ L+ L+R+  P+L+++     +K Q++ L+      PL  V   F   + + +++
Sbjct: 185 VMATIELMRLVRKANPRLWDHFLSLGDKVQIQNLV--NQRKPLAMVDPFFSREQGHLSIV 242

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
            P+ +    K  +   +L  D      L+  ++ +R+FT   +L +G     I+ +  NK
Sbjct: 243 LPIIYDLSVKTKMYAVDLREDPTELLSLEPSEIRRRMFTKVSDLGEGEGISSIRSISTNK 302

Query: 300 CPILMPIDY--CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
            P++  +     + +   R GID +RCL++ T++      R+R +  +   +       +
Sbjct: 303 QPMVTELSVLRGRDDLTRRAGIDMERCLKHATMIDADKGFRERLQQAFISDFDPPEDVYE 362

Query: 358 SQLYDGFFADVDRQ----------------IMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
                G     +                      I+ T P +LST+       RL     
Sbjct: 363 GIYSLGMIGRDEHNLRSRTRRLISIPGFEGQRPEIIATDPHELSTMQSR---DRLRMFEL 419

Query: 402 RYRAR--NF------PHTLSEKEKQDWLEHRKKMLTRS-------RIEEYKNKLQSLSGE 446
             RA+  N+       +  +  E  +W++H  +             +E +   L  +   
Sbjct: 420 TLRAKWANYGDEVMGYNKFTPAEIGEWVKHLDRRWFSDHNLKNCSNLERFTTALAEVKAS 479

Query: 447 YKGDEGKEGLINALYEYLQWVI 468
              D  +E  +  L  ++   +
Sbjct: 480 VAMDATQEKALEELEAHVMSTV 501


>gi|119713146|gb|ABL97215.1| exodeoxyribonuclease I [uncultured marine bacterium EB0_49D07]
          Length = 469

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 92/477 (19%), Positives = 174/477 (36%), Gaps = 33/477 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +++ + YD ET G      +  Q   ++ +R  E +       C P    +P P A+   
Sbjct: 4   SSNLIFYDTETTGLLKDFSQILQCGSIQTNRSLEILHEQN-LGCAPLPWAIPYPMAMVTN 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             T        V   E  R +++ +           I +N + +D+   R  FY N ++S
Sbjct: 63  KKTN--LFHSNVSHYELMRDLNRQWRQWTIDEPAVFITFNGMAYDEELVRRQFYWNLFES 120

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWP-SRDDGATSFKLQDLALANGIEHVNAHD 176
           Y  +  NGN R D+L +M  + AFSPD +  P        S K  D+A ANGIE  +AHD
Sbjct: 121 YL-TNTNGNGRLDILLMMNNVAAFSPDVLNIPLFDGGPGISLKQADIAEANGIEIGDAHD 179

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
           A AD    + L+  I  KKP+L ++      K  ++  ++      L  V          
Sbjct: 180 AIADCKLMIGLLEKINAKKPELIDFFLSISTKPGIQAAVEHPGFLALGEV----FRREIF 235

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296
              + P          ++  +LS +     ++D+ ++   +             P K+  
Sbjct: 236 KYPVVPCGSKAPND--LMFFDLSFEPEEIFEMDTQEIYSLVQKPGKS------GPFKKYG 287

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLR----DRFKAIYNKPYTSS 352
           +NK   + P      +  + + ID +   +    +R+ T+ +           +      
Sbjct: 288 INKTIPVCPSSMIDNK--DIFDIDFEVLEKRAAQVRENTDFQALVSQAMADKIDNWNNEY 345

Query: 353 SQDVDSQLYDGFFADVDRQIMDRILRTA-PEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
                     GF +  D+++M    R    E+   +    +D R      R   + +P  
Sbjct: 346 DHIEQMIYAGGFPSKQDKELMADFHRIDSAEERIKICRNITDERHRLFAERLICQFYPQE 405

Query: 412 LSEKEKQDWLEHRKKMLTR----SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
             E     +     + L        + +   +L+ L  +    E  + ++    ++L
Sbjct: 406 APEDMMNRYQSLITQRLNEDGPWGSMSKVMTELEKLLEKDNSTE-TQTILEDTKKFL 461


>gi|254419026|ref|ZP_05032750.1| exonuclease family [Brevundimonas sp. BAL3]
 gi|196185203|gb|EDX80179.1| exonuclease family [Brevundimonas sp. BAL3]
          Length = 476

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 95/470 (20%), Positives = 171/470 (36%), Gaps = 28/470 (5%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV YD ET G     D+  QFA +  D    +++  E   C+     +P P+A+    ++
Sbjct: 3   FVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDRFE-LRCRLQPHVVPHPKAMLANRLS 61

Query: 65  PQKALRDGVV-EAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            ++     +    +  R I +  S       IGYN+IRFD+   R+ F++N + +Y  + 
Sbjct: 62  IERLTDLSLPSHYDMVREIRRRLSGWGRGIFIGYNSIRFDEEMLRHAFFQNLFPAYL-TS 120

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             G  R D + ++    A +   +  P   DG  +F+L+ +A ANG+    AHDA AD  
Sbjct: 121 TPGCGRADAMHIVLTACADASACLTLPLAADGRKTFRLEAVAAANGLNVDAAHDAMADAQ 180

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
            TLAL   +  + P+++       NK  +  L+  + +  L    G   + R    ++A 
Sbjct: 181 MTLALCRRVASEAPEIWSRAIRTSNKAAVADLVASEPLFILTEFYGFEASHR----VVAC 236

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +       +  +  +L+ D      L +  LA  +             P++ +  N  P 
Sbjct: 237 LGPEAGNPNGRLCWDLASDPAEAVQLQTDDLAALIS--------QREGPLRRLKTNAAPA 288

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS--QDVDSQL 360
           +       ++       D          L+    L  R        + +S     V+ QL
Sbjct: 289 IAMSWDAPEDWA---LGDVDEAERRAEWLQANPELSSRIIEAQAARWANSPLSPHVELQL 345

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YD F  D D ++M         +   +   F+D RL     R             +++  
Sbjct: 346 YDRFPDDDDLRLMADFHGAPKIRQREIVDSFADVRLRTFGRRLLHMEHRSAFIGNDRRAA 405

Query: 421 LEHRKKMLT-----RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
                + L         +   +     L      D     L+     +L 
Sbjct: 406 DADLAERLLIDKNGPLTMPAARTLAAELVASGVADAE--ALLKDYGVWLD 453


>gi|257486439|ref|ZP_05640480.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 341

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 128/338 (37%), Positives = 199/338 (58%), Gaps = 9/338 (2%)

Query: 136 RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKK 195
           RA YA  PDGI WP   DG  + KL+ L  ANGI+H  AHDA +DV AT+AL  LIREK+
Sbjct: 1   RAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDVRATIALARLIREKQ 59

Query: 196 PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIG 255
           PKL++YL+  R+K ++++ + +  M PLVH+SG F A+R+   ++ P+AWHP  ++++I 
Sbjct: 60  PKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVVLPLAWHPHNRNALIV 117

Query: 256 CNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCKKEHF 314
           C+L  D       D+  L +RL+T H+ L +G +PVP+K +H+N+CP++ P+   + E  
Sbjct: 118 CDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINRCPVIAPLGVLRSEDQ 177

Query: 315 ERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIM 373
           +R  +D +      T L +     +D+   +Y K   ++S+D + QLYDGF  D DR++ 
Sbjct: 178 QRLQLDMEGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQQLYDGFIGDRDRRLC 237

Query: 374 DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR- 432
           +++ +  PEQL+    PF D RLPEL FRYRARNFP TLS +E+Q W +  ++ L+    
Sbjct: 238 EQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQRWQDFCQQRLSDPER 297

Query: 433 -IEEYKNKLQSLSGEYKGD--EGKEGLINALYEYLQWV 467
                     +   E        +  ++    +Y Q +
Sbjct: 298 GAPNTLKDFATALAECSLSAAPEQLEVLRQWQDYAQAL 335


>gi|311086852|gb|ADP66933.1| exonuclease I [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 412

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 151/364 (41%), Positives = 220/364 (60%), Gaps = 5/364 (1%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  F+ YDYETFG   ALD+PAQFA +R D     I+  + F+C P+DDYLPDP +V IT
Sbjct: 35  TPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITPQ   ++G  E  FS++I+      NTC++GYNNI FDD  +RNIFYRNF+D Y WS
Sbjct: 95  HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W NGNSRWD+L+++RA YA  P GI WP  + G TSFKL DL   N I H+NAH+A +DV
Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           YAT+ +  L+++K+P+LF++ +  R KN+L KLID++N  P++++S  FGA   N + I 
Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWH    + +I  +L  D++   ++      K++      +K L+   +  +HLN+CP
Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTLINM-----CKKICFDSIFIKNLLDSGVVLLHLNRCP 329

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           IL PI   +KE + R         + + L+++        K I++K   ++         
Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389

Query: 362 DGFF 365
              F
Sbjct: 390 YNGF 393


>gi|224370128|ref|YP_002604292.1| SbcB [Desulfobacterium autotrophicum HRM2]
 gi|223692845|gb|ACN16128.1| SbcB [Desulfobacterium autotrophicum HRM2]
          Length = 471

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 109/484 (22%), Positives = 193/484 (39%), Gaps = 31/484 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ YD ET G + A D+   FA +R D +  +I+ T +      +D +P P A    
Sbjct: 1   MKTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVIS-LRNDIVPSPGAFITH 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            +TP+     G+ E +    IH+  + P+T  IGYN++ FDD + R  FYRN  D Y   
Sbjct: 60  RLTPEDLKD-GLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDPYTHQ 118

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
           + N  +R DLL +      F PDGI WP   D   S +L+ ++  N  ++   AHDA  D
Sbjct: 119 YANDCARMDLLPIATLYRIFKPDGIHWPV-IDDKASMRLELISEKNNLVQSGRAHDAMTD 177

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V ATLAL   +   + +++ Y  D+ +K   +  +D  +         +FG  R    + 
Sbjct: 178 VEATLALARRLSG-QKRMWNYCLDFFDKKNDQARLDAVD----EVFQSIFGRHRLCIMVS 232

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
                   Y   V+    S             L K L        G  P  +++ +    
Sbjct: 233 VSFGSDLTYMAPVLSLGHSTPYANQSLWLR--LDKELVLPFKPDSGDGPFVLRKRYGEAK 290

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ- 359
            +L  +D   +         H+ C +N+ +L+   +   +    +         D+D   
Sbjct: 291 IVLPSLD---RFWNRLTPSQHQVCEKNIAMLKANQDEFQKLVIHHRSFKYPFVPDLDLDA 347

Query: 360 --LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
               DGFF+ V+++ M    R        +       R+  L  R   RNF    + + +
Sbjct: 348 SLYQDGFFSSVEKKEMGVFHRAINNGEMGVCETLVSPRVKGLAQRIVLRNFYEQAAPEVR 407

Query: 418 ---QDWLEHRKKMLTRSRIEEYK-----------NKLQSLSGEYKGDEGKEGLINALYEY 463
                ++   +  L    ++ Y+            +L S+      D  ++ +++ L  +
Sbjct: 408 AGHDRYMVKIRGPLGDDPVKGYRNDLKFTCDMAAQELASVRSAQGLDADQKAILDWLDAH 467

Query: 464 LQWV 467
           ++ +
Sbjct: 468 IKSM 471


>gi|325276504|ref|ZP_08142261.1| exonuclease I [Pseudomonas sp. TJI-51]
 gi|324098364|gb|EGB96453.1| exonuclease I [Pseudomonas sp. TJI-51]
          Length = 355

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 131/353 (37%), Positives = 211/353 (59%), Gaps = 13/353 (3%)

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             G SRWDL+D++R  YA  P+GI+WP + DG TS +L+ L+ ANGI+H +AH+A +DV 
Sbjct: 1   QGGTSRWDLIDIVRTAYALRPEGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDVR 59

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT+AL  LIR+K+PKL+++L+  R+K+++ + I +  + PLVHVSG F A+R+   ++ P
Sbjct: 60  ATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHVSGRFSAARNYLGVVLP 117

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
           +AWHP  ++++I C+L  +        +  L +RL+T H++L  G +PVP+K V +N+CP
Sbjct: 118 LAWHPHNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHEDLADGELPVPLKLVQINRCP 177

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           +L P+   +    +R GID          L  QQ   +D+ + IY K   + S+D + QL
Sbjct: 178 VLAPLSVLRPADQQRLGIDLTLLQSRGEQLADQQAQWQDKLEHIYGKDDFAPSEDPEQQL 237

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y+GF  D DR++ +++    P QL      F D RLPEL FRYRARNFP TL+ +E+Q W
Sbjct: 238 YNGFIGDRDRRLCEQVRALEPAQLGRGQWLFDDPRLPELLFRYRARNFPDTLTPEERQRW 297

Query: 421 LEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
               ++ L++        + +++     L    + DE    ++ A   + + +
Sbjct: 298 YAFCQQRLSQPQWGAPNTLGDFEQA--RLQAWERADEAGRRVLEAWQVHARNL 348


>gi|145629537|ref|ZP_01785335.1| exodeoxyribonuclease I [Haemophilus influenzae 22.1-21]
 gi|144978380|gb|EDJ88144.1| exodeoxyribonuclease I [Haemophilus influenzae 22.1-21]
          Length = 244

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 133/226 (58%), Positives = 165/226 (73%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F IYDYE+FG + A DRPAQFAG+R D  +  I    +F+CK  +DYLP PEAV +TGI
Sbjct: 6   SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G+ E EF+  I   FS PNTC++GYNNIR+DD  +R  FYRNF D Y +SW 
Sbjct: 66  TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           NGNSRWDLLD++RA YA  P+GI W   DDG  SF+L+ L  ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
           T+A+  LI+EK+PKLF+Y ++ R K ++ KL+D  +MTPLVHVSGM
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGSMTPLVHVSGM 231


>gi|254374578|ref|ZP_04990059.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548]
 gi|151572297|gb|EDN37951.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548]
          Length = 482

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 115/498 (23%), Positives = 190/498 (38%), Gaps = 57/498 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              + YD ET G + + D+  QFA +R D  + +IE    FF K   D  P P A     
Sbjct: 5   QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +A   G+ E +  R+IH+  + P T  IGYN + FDD + R  FY+N    Y   +
Sbjct: 64  ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD----GATSFKLQDLALANG-IEHVNAHDA 177
            NG SR DL  ++   Y F  + + WP   D      TS KL++L   N       AHDA
Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKLENLNQNNSLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228
             DV  T+ L   +R   PK++++L    NK      +           +     + VSG
Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDIGLEVGDRKYKQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283
           +FG+  +  + I  +  H  YK+  I   L     S  +  F  L++      L     +
Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302

Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343
           +                PI++P         +      +    N   +R        F  
Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344

Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
              +      +++D+        F +  D +  D+    A  Q + +      +   +  
Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446
            R   R     L  K + ++  +  K++              TR  +E+   +++ L   
Sbjct: 404 VRIIGRLDFSKLPAKAQMEFQNYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463

Query: 447 YKGDEGKEGLINALYEYL 464
           Y   E ++ L+  L EYL
Sbjct: 464 YDLTEEQQALLYELEEYL 481


>gi|332678483|gb|AEE87612.1| Exodeoxyribonuclease I [Francisella cf. novicida Fx1]
          Length = 482

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 115/498 (23%), Positives = 191/498 (38%), Gaps = 57/498 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              + YD ET G + + D+  QFA +R D  + +IE    FF K   D  P P A     
Sbjct: 5   QTLLFYDLETSGINNSFDQVLQFAAIRTDFDFNEIERFN-FFVKLNPDTTPSPMATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +A   G+ E +  R+IH+  + P T  IGYN + FDD + R  FY+N    Y   +
Sbjct: 64  ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD----GATSFKLQDLALANG-IEHVNAHDA 177
            NG SR DL  ++   Y F  + + WP   D      TS KL++L   N       AHDA
Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKLENLNQNNSLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228
             DV  T+ L   +R   PK++++L    NK      +           +     + VSG
Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDIGLEVGDRKYKQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283
           +FG+  +  + I  +  H  YK+  I   L     S  +  F  L++      L     +
Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302

Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343
           +                PI++P         +      +    N   +R        F  
Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344

Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
              +      +++D+        F +  D +  D+    A  Q + +      +   +  
Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446
            R   R     L  K + ++ ++  K++              TR  +E+   +++ L   
Sbjct: 404 VRIIGRLDFSKLPAKAQMEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463

Query: 447 YKGDEGKEGLINALYEYL 464
           Y   E ++ L+  L EYL
Sbjct: 464 YDLTEEQQALLYELEEYL 481


>gi|208779832|ref|ZP_03247176.1| exonuclease family protein [Francisella novicida FTG]
 gi|208744287|gb|EDZ90587.1| exonuclease family protein [Francisella novicida FTG]
          Length = 482

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 110/498 (22%), Positives = 185/498 (37%), Gaps = 57/498 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              + YD ET G + + D+  QFA +R D  + +IE    FF K   D  P P A     
Sbjct: 5   QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +A   G+ E +  R+IH+  + P T  IGYN + FDD + R  FY+N    Y   +
Sbjct: 64  ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDA 177
            NG SR DL  ++   Y F  + + WP   D       +          N      AHDA
Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228
             DV  T+ L   +R   PK++++L    NK      +           +     + VSG
Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGNRKYKQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283
           +FG+  +  + I  +  H  YK+  I   L     S  +  F  L++      L     +
Sbjct: 243 VFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302

Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343
           +                PI++P         +      +    N   +R        F  
Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344

Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
              +      +++D+        F +  D +  D+    A  Q + +      +   +  
Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446
            R   R     L  K + ++ ++  K++              TR  +E+   +++ L   
Sbjct: 404 VRIIGRLDFSKLPAKAQMEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463

Query: 447 YKGDEGKEGLINALYEYL 464
           Y   E ++ L+  L EYL
Sbjct: 464 YDLTEEQQALLYELEEYL 481


>gi|213850284|ref|ZP_03381182.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 225

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 134/215 (62%), Positives = 163/215 (75%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WS
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NAHDA ADV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
           YAT+A+  L++ ++P+LF+YLY +R+K++L  LID
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALID 223


>gi|254373125|ref|ZP_04988614.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570852|gb|EDN36506.1| exodeoxyribonuclease I [Francisella novicida GA99-3549]
          Length = 482

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/498 (22%), Positives = 185/498 (37%), Gaps = 57/498 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              + YD ET G + + D+  QFA +R D  + +IE    FF K   D  P P A     
Sbjct: 5   QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +A   G+ E +  R+IH+  + P T  IGYN + FDD + R  FY+N    Y   +
Sbjct: 64  ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDA 177
            NG SR DL  ++   Y F  + + WP   D       +          N      AHDA
Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228
             DV  T+ L   +R   PK++++L    NK      +           +     + VSG
Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283
           +FG+  +  + I  +  H  YK+  I   L     S  +  F  L++      L     +
Sbjct: 243 VFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302

Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343
           +                PI++P         +      +    N   +R        F  
Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344

Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
              +      +++D+        F +  D +  D+    A  Q + +      +   +  
Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446
            R   R     L  K + ++ ++  K++              TR  +E+   +++ L   
Sbjct: 404 VRIIGRLDFSKLPAKAQMEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463

Query: 447 YKGDEGKEGLINALYEYL 464
           Y   E ++ L+  L EYL
Sbjct: 464 YDLTEEQQALLYELEEYL 481


>gi|241668749|ref|ZP_04756327.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877280|ref|ZP_05249990.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843301|gb|EET21715.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 482

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 115/493 (23%), Positives = 186/493 (37%), Gaps = 47/493 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+ YD ET G + + D+  QFA +R D  + +IE    FF K   D  P P A     
Sbjct: 5   QTFLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPIATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +A   GV E +  R+IH+  + P T  IGYN + FDD + R  FY+N    Y   +
Sbjct: 64  ISIAQA-NTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD----GATSFKLQDLALANG-IEHVNAHDA 177
            NG SR DL  ++   Y F  D ++WP   D       S KL++L   N       AHDA
Sbjct: 123 KNGCSRADLFPIVTCYYLFCNDVLKWPKVLDEEGQRKISLKLENLNTENNLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM---------TPLVHVSG 228
             DV  T+ L   +R   PK++++L    NK      +   N+            + VSG
Sbjct: 183 ITDVIVTVELAKKLRIANPKMWQFLLAKFNKQNDENTLAQLNIGVEVGGIGYRQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
           +FG   +  + I  +  H  YK+  I   L          DS      +           
Sbjct: 243 VFGFKNNFMSAILDIGQHRHYKNQEIFLRL----------DSYDFKDFIEEFGSLEAEHW 292

Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP 348
            + + +      P+++P                     N   +R    +   F     + 
Sbjct: 293 RLTVNK-KWGDIPLILPAKTRFVGRLP--QDRLDLIKTNKEFIRSNPEIFANFVDYVLEY 349

Query: 349 YTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRA 405
                ++VD         F +  D +  D+   +   Q + +          +   R   
Sbjct: 350 KYPEIENVDIDAAIYQSDFMSAADERGCDKFHTSQIYQKAQMLNQLPKP-YYDRAVRIIG 408

Query: 406 RNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGEYKGDE 451
           R     L +K + ++ ++  K++              TR  +E+   ++Q L       E
Sbjct: 409 RLDFSKLPDKAQMEFQDYLNKIVSLDNDELLIDHKGKTRKTLEDIYQEMQDLRMNRDLTE 468

Query: 452 GKEGLINALYEYL 464
            ++ L+  L EYL
Sbjct: 469 EQQALLYELEEYL 481


>gi|134302180|ref|YP_001122149.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134049957|gb|ABO47028.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
          Length = 482

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/498 (22%), Positives = 185/498 (37%), Gaps = 57/498 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              + YD ET G + + D+  QFA +R D  + +IE    FF K   D  P P A     
Sbjct: 5   QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +A   G+ E +  R+IH+  + P T  IGYN + FDD + R  FY+N    Y   +
Sbjct: 64  ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDA 177
            NG SR DL  ++   Y F  + + WP   D       +          N      AHDA
Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228
             DV  T+ L   +R   PK++++L    NK      +           +     + VSG
Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283
           +FG+  +  + I  +  H  YK+  I   L     S  +  F  L++      L     +
Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302

Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343
           +                PI++P         +      +    N   +R        F  
Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344

Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
              +      +++D+        F +  D +  D+    A  Q + +      +   +  
Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446
            R   R     L  K + ++ ++  K++              TR  +E+   +++ L   
Sbjct: 404 VRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463

Query: 447 YKGDEGKEGLINALYEYL 464
           Y   E ++ L+  L EYL
Sbjct: 464 YDLTEEQQALLYELEEYL 481


>gi|118497767|ref|YP_898817.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida
           U112]
 gi|194323739|ref|ZP_03057515.1| exonuclease family protein [Francisella tularensis subsp. novicida
           FTE]
 gi|118423673|gb|ABK90063.1| exodeoxyribonuclease I [Francisella novicida U112]
 gi|194322103|gb|EDX19585.1| exonuclease family protein [Francisella tularensis subsp. novicida
           FTE]
          Length = 482

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 110/498 (22%), Positives = 184/498 (36%), Gaps = 57/498 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              + YD ET G + + D+  QFA +R D  + +IE    FF K   D  P P A     
Sbjct: 5   QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +A   G+ E +  R+IH+  + P T  IGYN + FDD + R  FY+N    Y   +
Sbjct: 64  ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDA 177
            NG SR DL  ++   Y F  + + WP   D       +          N      AHDA
Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228
             DV  T+ L   +R   PK++++L    NK      +           +     + VSG
Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283
           +FG+  +  + I  +  H  YK+  I   L     S  +  F  L++      L     +
Sbjct: 243 VFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302

Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343
           +                PI++P         +      +    N   +R        F  
Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344

Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
              +      +++D+        F    D +  D+    A  Q + +      +   +  
Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMNMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446
            R   R     L  K + ++ ++  K++              TR  +E+   +++ L   
Sbjct: 404 VRIIGRLDFSKLPAKAQMEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463

Query: 447 YKGDEGKEGLINALYEYL 464
           Y   E ++ L+  L EYL
Sbjct: 464 YDLTEEQQALLYELEEYL 481


>gi|56708263|ref|YP_170159.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670734|ref|YP_667291.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457383|ref|ZP_03665856.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370748|ref|ZP_04986753.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875083|ref|ZP_05247793.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604755|emb|CAG45833.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321067|emb|CAL09216.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568991|gb|EDN34645.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254841082|gb|EET19518.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159490|gb|ADA78881.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 482

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 109/498 (21%), Positives = 185/498 (37%), Gaps = 57/498 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              + YD ET G + + D+  QFA +R+D  + +IE    FF K   D  P P A     
Sbjct: 5   QTLLFYDLETSGINNSFDQVLQFAAIRIDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +A   G+ E +  R+IH+  + P T  IGYN + FDD + R  FY+N    Y   +
Sbjct: 64  ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDA 177
            NG SR DL  ++   Y F  + + WP   D       +          N      AHDA
Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228
             DV  T+ L   +    PK++++L    NK      +           +     + VSG
Sbjct: 183 ITDVIVTVELAKKLIAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283
           +FG+  +  + I  +  H  YK+  I   L     S  +  F  L++      L     +
Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302

Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343
           +                PI++P         +      +    N   +R        F  
Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344

Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
              +      +++D+        F +  D +  D+    A  Q + +      +   +  
Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446
            R   R     L  K + ++ ++  K++              TR  +E+   +++ L   
Sbjct: 404 VRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463

Query: 447 YKGDEGKEGLINALYEYL 464
           Y   E ++ L+  L EYL
Sbjct: 464 YDLTEEQQALLYELEEYL 481


>gi|254369135|ref|ZP_04985147.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122085|gb|EDO66225.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 482

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 109/498 (21%), Positives = 184/498 (36%), Gaps = 57/498 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              + YD ET G + + D+  QFA +R D  + +IE    FF K   D  P P A     
Sbjct: 5   QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +A   G+ E +  R+IH+  + P T  IGYN + FDD   R  FY+N    Y   +
Sbjct: 64  ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSR-----DDGATSFKLQDLALANGIEHVNAHDA 177
            NG SR DL  ++   Y F  + + WP        +  +          N      AHDA
Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAINEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228
             DV  T+ L   +R   PK++++L    NK      +           +     + VSG
Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283
           +FG+  +  + I  +  H  YK+  I   L     S  +  F  L++      L     +
Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302

Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343
           +                PI++P         +      +    N   +R        F  
Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344

Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
              +      +++D+        F +  D +  D+    A  Q + +      +   +  
Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446
            R   R     L  K + ++ ++  K++              TR  +E+   +++ L   
Sbjct: 404 VRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463

Query: 447 YKGDEGKEGLINALYEYL 464
           Y   E ++ L+  L EYL
Sbjct: 464 YDLTEEQQALLYELEEYL 481


>gi|332184270|gb|AEE26524.1| Exodeoxyribonuclease I [Francisella cf. novicida 3523]
          Length = 482

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 112/498 (22%), Positives = 189/498 (37%), Gaps = 57/498 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+ YD ET G + + D+  QFA +R D  + +IE    FF K   D  P P A     
Sbjct: 5   QTFLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPIATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +A   GV E +  R+IH+  + P T  IGYN + FDD + R  FY+N    Y   +
Sbjct: 64  ISIAQA-NTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD----GATSFKLQDLALANG-IEHVNAHDA 177
            NG SR DL  ++   + F  D ++WP   D       S KL++L   N       AHDA
Sbjct: 123 KNGCSRADLFPIVTCYHLFCNDVLKWPKILDEEGQQKISLKLENLNTENNLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM---------TPLVHVSG 228
             DV  T+ L   ++   PK++++L    NK      +   ++            + VSG
Sbjct: 183 ITDVIVTVELAKKLKIANPKMWQFLLTKFNKQNDENTLAQLDIGLEIGSVGYRQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283
           +FG   +  + I  +  H  YK+  I   L     S  +  F  L++      L     +
Sbjct: 243 VFGFKNNFMSAILDIGQHRHYKNQEIFLRLDSYLFSEFIEEFGSLEAEHWRLTLNKKWGD 302

Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343
           +                P+++P                     N   ++    +   F  
Sbjct: 303 I----------------PLILPAKTRFVGRLP--QDRLDLIKSNKEFIKDNQEIFANFVD 344

Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
              +      +++D         F +  D +  D+       Q + +      +   +  
Sbjct: 345 YVLEYKYPEIENIDIDAAIYQSDFMSAADERGCDKFHSLPIRQKAQMLNQLP-KSYYDRA 403

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446
            R   R     L +K + ++ ++  K++              TR  +E+   ++Q L   
Sbjct: 404 VRIIGRLDFSKLPDKAQMEFQDYLNKIVSLDNNELLIDHKGKTRKTLEDIYQEMQDLRMN 463

Query: 447 YKGDEGKEGLINALYEYL 464
               E ++ L+  L EYL
Sbjct: 464 RNLTEEQQSLLYELEEYL 481


>gi|89256131|ref|YP_513493.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314604|ref|YP_763327.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502153|ref|YP_001428218.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009834|ref|ZP_02274765.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367455|ref|ZP_04983481.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           257]
 gi|290953267|ref|ZP_06557888.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313509|ref|ZP_06804104.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143962|emb|CAJ79183.1| Exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129503|gb|ABI82690.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253271|gb|EBA52365.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
           257]
 gi|156252756|gb|ABU61262.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00]
          Length = 482

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 109/498 (21%), Positives = 184/498 (36%), Gaps = 57/498 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              + YD ET G + + D+  QFA +R D  + +IE    FF K   D  P P A     
Sbjct: 5   QTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +A   G+ E +  R+IH+  + P T  IGYN + FDD   R  FY+N    Y   +
Sbjct: 64  ISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSR-----DDGATSFKLQDLALANGIEHVNAHDA 177
            NG SR DL  ++   Y F  + + WP        +  +          N      AHDA
Sbjct: 123 KNGCSRADLFPIVTCYYLFCNEVLNWPKAINEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228
             DV  T+ L   +R   PK++++L    NK      +           +     + VSG
Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283
           +FG+  +  + I  +  H  YK+  I   L     S  +  F  L++      L     +
Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302

Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343
           +                PI++P         +      +    N   +R        F  
Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFIE 344

Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
              +      +++D+        F +  D +  D+    A  Q + +      +   +  
Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446
            R   R     L  K + ++ ++  K++              TR  +E+   +++ L   
Sbjct: 404 VRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463

Query: 447 YKGDEGKEGLINALYEYL 464
           Y   E ++ L+  L EYL
Sbjct: 464 YDLTEEQQALLYELEEYL 481


>gi|167626316|ref|YP_001676816.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596317|gb|ABZ86315.1| Exodeoxyribonuclease I [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 482

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 114/493 (23%), Positives = 187/493 (37%), Gaps = 47/493 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+ YD ET G + + D+  QFA +R D  + +IE    FF K   D  P P A     
Sbjct: 5   QTFLFYDSETTGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPIATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +A   GV E +  R+IH+  + P T  IGYN + FDD + R  FY+N    Y   +
Sbjct: 64  ISIAQA-NTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD----GATSFKLQDLALANG-IEHVNAHDA 177
            NG SR DL  ++   Y F  D ++WP   D       S KL++L   N       AHDA
Sbjct: 123 KNGCSRADLFPIVTCYYLFCNDVLKWPKVLDEEGQPKISLKLENLNTENNLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM---------TPLVHVSG 228
             DV  T+ L   +R   PK++++L    NK      +   ++            + VSG
Sbjct: 183 ITDVIVTVELAKKLRIANPKMWQFLLAKFNKQNDENTLAQLDISVEVGGIGYRQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
           +FG   +  + I  +  H  YK+  I   L          DS      +           
Sbjct: 243 VFGFKNNFMSAILDIGQHRHYKNQEIFLRL----------DSYDFKDFIEEFGSLEAEHW 292

Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP 348
            + + +      P+++P                     N   +R    +   F     + 
Sbjct: 293 RLTVNK-KWGDIPLILPAKTRFVGRLP--QDRLDLIKTNKEFIRSNQEIFANFVDYVLEY 349

Query: 349 YTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRA 405
                ++VD         F +  D +  D+   +   Q + +      +   +   R   
Sbjct: 350 KYPEIENVDIDAAIYQSDFMSAADERGCDKFHTSQIYQKAQMLNQLP-KSYYDRAVRIIG 408

Query: 406 RNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGEYKGDE 451
           R     L +K + ++ ++  K++              TR  +E+   ++Q L       E
Sbjct: 409 RLDFSKLPDKAQMEFQDYLNKIVSLDNDELLIDHKGKTRKTLEDIYQEMQDLRMNRDLTE 468

Query: 452 GKEGLINALYEYL 464
            ++ L+  L EYL
Sbjct: 469 EQQALLYELEEYL 481


>gi|187931547|ref|YP_001891531.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712456|gb|ACD30753.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 482

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 107/498 (21%), Positives = 183/498 (36%), Gaps = 57/498 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              + YD ET G + + D+  QFA +R    + +IE    FF K   D +P P A     
Sbjct: 5   QTLLFYDLETSGINNSFDQVLQFAAIRTYLDFNEIERFN-FFVKLNPDTMPSPMATITHH 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +    G+ E +  R+IH+  + P T  IGYN + FDD + R  FY+N    Y   +
Sbjct: 64  ISIAQ-SNTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQF 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDA 177
            NG SR DL  ++   Y    + + WP   D       +          N      AHDA
Sbjct: 123 KNGCSRADLFPIVTCYYLLCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDA 182

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID---------IQNMTPLVHVSG 228
             DV  T+ L   +R   PK++++L    NK      +           +     + VSG
Sbjct: 183 ITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSG 242

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDE 283
           +FG+  +  + I  +  H  YK+  I   L     S  +  F  L++      L     +
Sbjct: 243 IFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKWGD 302

Query: 284 LKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343
           +                PI++P         +      +    N   +R        F  
Sbjct: 303 I----------------PIILPAKTRFVG--KLPQERIELIKANKEFIRNNPETFANFVE 344

Query: 344 IYNKPYTSSSQDVDSQ---LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
              +      +++D+        F +  D +  D+    A  Q + +      +   +  
Sbjct: 345 YVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLP-KSYYDRA 403

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKML--------------TRSRIEEYKNKLQSLSGE 446
            R   R     L  K + ++ ++  K++              TR  +E+   +++ L   
Sbjct: 404 VRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQEIEDLRMN 463

Query: 447 YKGDEGKEGLINALYEYL 464
           Y   E ++ L+  L EYL
Sbjct: 464 YDLTEEQQALLYELEEYL 481


>gi|297519534|ref|ZP_06937920.1| exonuclease I [Escherichia coli OP50]
          Length = 213

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 130/213 (61%), Positives = 157/213 (73%), Gaps = 6/213 (2%)

Query: 1   MTN------HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N       F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP 
Sbjct: 1   MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQ 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P AV ITGITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNF
Sbjct: 61  PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNF 120

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANGIEH NA
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
           HDA ADVYAT+A+  L++ ++P+LF+YL+ +RN
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN 213


>gi|226330550|ref|ZP_03806068.1| hypothetical protein PROPEN_04468 [Proteus penneri ATCC 35198]
 gi|225201345|gb|EEG83699.1| hypothetical protein PROPEN_04468 [Proteus penneri ATCC 35198]
          Length = 274

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 121/274 (44%), Positives = 176/274 (64%), Gaps = 2/274 (0%)

Query: 198 LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCN 257
           +F+Y ++ R+K +++ LIDI  MTP+VHVSGMFGA+RSN +L+AP+AWHP  +++VI C+
Sbjct: 1   MFDYFFNLRDKRKVQALIDIPAMTPIVHVSGMFGAARSNLSLVAPLAWHPDNRNAVIVCD 60

Query: 258 LSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316
           LS D+     L S QL +RL+T   EL     PVPIK +H+NKCPI+ P +  + +  +R
Sbjct: 61  LSADISPLLTLTSDQLRERLYTPRSELAVDEPPVPIKLLHINKCPIVAPQNTLRPQDADR 120

Query: 317 WGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLYDGFFADVDRQIMDR 375
            G+D   CL N  +L     +R++   ++  +     S DVDSQ+Y+GFF++ DR  M+ 
Sbjct: 121 IGLDVDTCLNNQAILFSHPEIRNKVVELFAQQTPFVVSDDVDSQIYNGFFSENDRSAMEI 180

Query: 376 ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEE 435
           I  T P+ L  L+L F D R+  LFFRYRARN+P TL+  E+Q WL HRK+MLT  ++ E
Sbjct: 181 IRSTQPQNLPALDLTFEDARMEPLFFRYRARNYPSTLNYDEQQRWLAHRKEMLTPEKLNE 240

Query: 436 YKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           Y N +Q L+ +Y  +E K   +  LY Y Q +  
Sbjct: 241 YINTIQLLAEKYSDNEEKLKQLQELYLYAQDIAS 274


>gi|162148670|ref|YP_001603131.1| exodeoxyribonuclease I [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787247|emb|CAP56840.1| putative exodeoxyribonuclease I [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 437

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 90/439 (20%), Positives = 158/439 (35%), Gaps = 24/439 (5%)

Query: 35  EKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVV-EAEFSRRIHQFFSVPNT-C 92
            ++   E    +     LP P A+   G++ +      +         I +     +   
Sbjct: 2   NEVARFEA-RSRLQPHVLPHPSALRTNGLSIESLTDTNLPSHYAMVGDIRRILMSWSPAV 60

Query: 93  IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152
            +G+N+IRFD+   R+  ++  Y +Y  S      R D L ++ A  A SP  +  P  +
Sbjct: 61  FVGFNSIRFDEEMLRHALFQCLYPAYLTSNHRNC-RADALSLVMAADAVSPAQLVVPVSE 119

Query: 153 DGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
           +G  +F+LQ LA ANG+ H  AHDA +DV AT+ L  L+ ++ P L++    + NK  + 
Sbjct: 120 EGRRTFRLQQLAAANGLVHARAHDAMSDVLATIELCRLVHQRSPDLWQRFVRFSNKATVS 179

Query: 213 KLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQ 272
             +D ++      V   F   ++  A +  +   P   +  +  +L  D+     +  V+
Sbjct: 180 DFVDAEDG----FVLTEFYGGQAYHAPVVCIGVDPDQANGRLCLSLYHDVGQLARMSDVE 235

Query: 273 LAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLR 332
           L   L           P PI+   +N  P L       +   +   I H           
Sbjct: 236 LQAHL--------AQKPSPIRRFRINAAPTLTAFFDAPEHMLDGGSIGHIEDQARRVKAD 287

Query: 333 QQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFS 392
                R     I  +     S  ++ ++Y+GF    D   M+   + +     ++     
Sbjct: 288 ADLCTRLVAAYIAAREPYPLSPHLEERIYNGFPGPDDEGRMNAFHQVSWPDRLSIVQSLE 347

Query: 393 DRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEY 447
           D RL     R         L    K +        L          E    +   L G+ 
Sbjct: 348 DERLRWFGLRLVYFEARRVLPATVKVEIERRLANQLAGDGSGCLTYELALAETNKLMGQQ 407

Query: 448 KGDEGKEGLINALYEYLQW 466
              +G   L+     YLQ 
Sbjct: 408 TDHDG---LLARYRIYLQD 423


>gi|226330549|ref|ZP_03806067.1| hypothetical protein PROPEN_04467 [Proteus penneri ATCC 35198]
 gi|225201344|gb|EEG83698.1| hypothetical protein PROPEN_04467 [Proteus penneri ATCC 35198]
          Length = 204

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 121/197 (61%), Positives = 145/197 (73%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T+ F I+DYETFG   ALDRPAQFAG+R D  +  IE   V +CKP DDYLP PEAV IT
Sbjct: 7   TSTFYIHDYETFGTHPALDRPAQFAGIRTDMDFNIIEDPLVIYCKPNDDYLPHPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ A ++G++EAEF+R+IHQ FS PN+CI+GYNN+RFDD  +RNI YRNFYD Y +S
Sbjct: 67  GITPQIAAKNGLIEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W  GNSRWDLLDV+RA YA  P+GI WP  +DG  SF+L+ L  ANGI H NAHDA +DV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGIVWPENEDGFPSFRLELLTKANGISHENAHDAMSDV 186

Query: 182 YATLALVWLIREKKPKL 198
           YAT+A+   I       
Sbjct: 187 YATIAMAKKIETSSTAY 203


>gi|289804761|ref|ZP_06535390.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 321

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 145/281 (51%), Positives = 199/281 (70%), Gaps = 1/281 (0%)

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
           +FYRNFYD Y WSW + NSRWDLLDVMRA YA  P+GI WP  DDG  SF+L+ L  ANG
Sbjct: 1   MFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANG 60

Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
           IEH NAHDA ADVYAT+A+  L++ ++P+LF+YLY +R+K++L  LID+  M PLVHVSG
Sbjct: 61  IEHSNAHDAMADVYATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSG 120

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
           MFGA R NT+ +AP+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L    
Sbjct: 121 MFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHA 180

Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK- 347
            VP+K VH+NKCP+L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ + 
Sbjct: 181 AVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEA 240

Query: 348 PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLN 388
              ++S +VD+QLYDGFF+D DR  M  +L T P  L  L+
Sbjct: 241 EPFATSDNVDAQLYDGFFSDADRAAMKIVLETEPRNLPALD 281


>gi|289677836|ref|ZP_06498726.1| exonuclease I [Pseudomonas syringae pv. syringae FF5]
          Length = 295

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 105/265 (39%), Positives = 162/265 (61%), Gaps = 4/265 (1%)

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
           H  AHDA +DV AT+AL  LIREK+PKL++YL+  R+K ++++ + +  M PLVH+SG F
Sbjct: 1   HGQAHDALSDVRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRF 58

Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVP 289
            A+R+   ++ P+AWHP  ++++I C+L  D        +  L +RL+T HD L  G +P
Sbjct: 59  SAARNYLGVVLPLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELP 118

Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKP 348
           VP+K +H+N+CP++ P+   + E  +R  +D          L ++     D+  A+Y K 
Sbjct: 119 VPLKLLHINRCPVIAPLGVLRSEDQQRLQLDMAGYQARAAQLSERREVWHDKLAAVYGKD 178

Query: 349 YTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408
              +S+D + QLYDGF  D DR++ +++ +  PEQL+    PF D RLPEL FRYRARNF
Sbjct: 179 DFVASEDPEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNF 238

Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRI 433
           P TLS +E+  W +  ++ L     
Sbjct: 239 PDTLSGEEQTRWRDFCQQRLRSPEW 263


>gi|60326832|gb|AAX18929.1| putative exonuclease I [Pseudomonas fluorescens]
          Length = 278

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 89/276 (32%), Positives = 156/276 (56%), Gaps = 12/276 (4%)

Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLS 259
           ++L+  R+K ++   + +  + P+VH+SG F A+R    +I P+AWHPR ++++I C+L 
Sbjct: 1   DWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAARHYIGVILPLAWHPRNRNALIVCDLH 58

Query: 260 GDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWG 318
            D +   +LD+  L +RL+T  ++L +G +PVP+K +H+N+CP++ P+   + E  +R  
Sbjct: 59  LDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRCPVVAPLSVLRSEDQQRLH 118

Query: 319 IDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRIL 377
           +D +        L +     RD+   IY     ++S D + QLYDGF AD DR++ +++ 
Sbjct: 119 LDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQQLYDGFIADRDRRLCEQVR 178

Query: 378 RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRS------ 431
              P  L+    PF D RLPEL FRYRARNFP TL++ E++ WL   ++ L         
Sbjct: 179 EADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQERWLVFCQQRLLDPQLGAPN 238

Query: 432 RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            +E ++  L+        D  +  +++   +Y+Q +
Sbjct: 239 TLESFRQGLEQ--SLLSADPVQRQVLDQWQDYVQAL 272


>gi|134082476|emb|CAK97283.1| unnamed protein product [Aspergillus niger]
          Length = 298

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 111/178 (62%), Positives = 134/178 (75%)

Query: 30  VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP 89
              ++  I   EVF+CKPADDYLP P AV ITGITPQ+A   G  EA F+ RIH  F+VP
Sbjct: 121 FKGEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVP 180

Query: 90  NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWP 149
            TCI+GYNN+RFDD  +RNIFYRNFYD Y WSW + NSRWDLLDVMRA YA  P+GI WP
Sbjct: 181 KTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWP 240

Query: 150 SRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
             DDG  SF+L+ L  ANGIEH NAHDA ADVYAT+A+  L++ ++P+LF+YL+ +RN
Sbjct: 241 ENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN 298


>gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
 gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
          Length = 1435

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/475 (15%), Positives = 137/475 (28%), Gaps = 47/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     DR  + A V++ R  E I++ E F       Y        +TGI
Sbjct: 419 TYVVFDVETTGLSSVYDRIIELAAVKM-RNGEVIDTFEAF---INPGYHLSAMITELTGI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          EAE   R  +F       I+  +N  FD  +    + R           
Sbjct: 475 TDAMLADAP-PEAEVMARFAEF---SKDTILVAHNASFDMGFLNKTYARLGMPVP----- 525

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +             +    S +L  LA   G+     H A  D   
Sbjct: 526 -DQPVIDTLELSRLV-------------NPDMRSHRLNVLAKHYGVTLEQHHRAVYDSET 571

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  + + + ++  + +  +   +   Q+ K    +   P                     
Sbjct: 572 TGYVCYKLLDQAKEQYGMVRHEQLNEQVGKGDSYKQARPFHATLIAKNQEGLKDLFKLIS 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A + +Y         S   +   +L               ++       K V       L
Sbjct: 632 ASNVQYFFREPRIPRSLLTKYRDNLLVGTACSNGEVFTAMMQKGYDEAEKLVDFYDYIEL 691

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P                      +  + +    +++        +    +D    +Y  
Sbjct: 692 QPKSVYGPLIETELIRSEADLETIMKEMVRLGQDKNKLVVATGDVHYLEPKDA---IYRE 748

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARN----FPHTLSEKEK 417
                 +   +R L   P     ++   +D  + E  F  R  A       P  +     
Sbjct: 749 ILLRSMKINANRTLHLPP-----VHFRTTDEMMAEFDFLGRDLAYELVITNPQKI-ADMV 802

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           ++  E  K  L    I     ++  L    + E  GD   E +   + + L+ +I
Sbjct: 803 EEV-EVIKDKLYTPNIPGANEEITELSYTRARELYGDPLPEIVEKRIEKELKSII 856


>gi|297519535|ref|ZP_06937921.1| exonuclease I [Escherichia coli OP50]
          Length = 235

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 105/234 (44%), Positives = 157/234 (67%), Gaps = 1/234 (0%)

Query: 202 LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGD 261
           L+ +RNK++L  LID+  M PLVHVSGMFGA R NT+ +AP+AWHP  +++VI  +L+GD
Sbjct: 1   LFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGD 60

Query: 262 MRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDH 321
           +    +LDS  L +RL+T+  +L     VP+K VH+NKCP+L   +  + E  +R GI+ 
Sbjct: 61  ISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINR 120

Query: 322 KRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTA 380
           + CL+NL +LR+   +R++  AI+ +    + S +VD+QLY+GFF+D DR  M  +L T 
Sbjct: 121 QHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETE 180

Query: 381 PEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIE 434
           P  L  L++ F D+R+ +L F YRARNFP TL   E+Q WLEHR+++ T   ++
Sbjct: 181 PRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQ 234


>gi|213859584|ref|ZP_03385288.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 228

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 152/228 (66%), Gaps = 1/228 (0%)

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+AWHP  +++VI  +L+GD+    +LDS  L +RL+T+  +L     VP+K VH+NKCP
Sbjct: 1   PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 60

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
           +L   +  + E  +R GI+ + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QL
Sbjct: 61  VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQL 120

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           YDGFF+D DR  M  +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 121 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 180

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           LEHR+++LT   +++Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 181 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 228


>gi|153872365|ref|ZP_02001281.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
 gi|152071166|gb|EDN68716.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
          Length = 312

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/307 (22%), Positives = 128/307 (41%), Gaps = 15/307 (4%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M N ++ YD ET G +    +  QFA +R D Q+ +IE  ++   K   D +P P+A   
Sbjct: 1   MNNTYLFYDIETTGLNKTFAQILQFAAIRTDMQFNEIERHDILI-KLRPDVIPSPKATIT 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I+  +++  G+ E E   +IH+  +   T  +GYN   FDD + R  F+RN    Y  
Sbjct: 60  HRISIAQSM-QGLCEFEAIMQIHRLMNQSGTISLGYNTSSFDDEFLRFCFHRNLLPPYTH 118

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            + +G  R DLL +    Y +  + ++     DG  + +L+ L+  N +    AH+A  D
Sbjct: 119 QYKDGCRRSDLLPITIMYYLYKKEVLENWPEIDGKPTMRLEKLSEVNQLAIGQAHNAIVD 178

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG----------MF 230
           V AT+ L   + ++ PK++ YL  Y +K   +K    +       ++            +
Sbjct: 179 VEATVELARRLFKE-PKMWGYLDGYFDKTTDKKKRIEELPIAFHSIACSNRMGLMIDNKY 237

Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290
           G++      +  +     YK+  +   L         +    +     +  +E       
Sbjct: 238 GSANQYQVPVLLIGHSIPYKNQTLWLRLDNP--NLSKIQKQDIPSETSSVEEEKNFSKNS 295

Query: 291 PIKEVHL 297
            +    +
Sbjct: 296 WVIRKKI 302


>gi|289677835|ref|ZP_06498725.1| exonuclease I [Pseudomonas syringae pv. syringae FF5]
          Length = 166

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/164 (48%), Positives = 95/164 (57%), Gaps = 1/164 (0%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D    +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
            W  GNSRWDL+DV+RA YA  PDGI WP   DG  + KL+ L 
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLT 163


>gi|226490305|emb|CAQ42995.1| exonuclease [Escherichia coli]
          Length = 156

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 95/150 (63%), Positives = 110/150 (73%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7   QPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ+A   G  EA F+ RIH  F+VP TCI+GYNN+RFDD  +RN+FYRNFYD Y WS
Sbjct: 67  GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWS 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151
           W + NSRWDLLDVMRA YA  P+GI WP  
Sbjct: 127 WQHDNSRWDLLDVMRACYALRPEGINWPEN 156


>gi|124008030|ref|ZP_01692729.1| exodeoxyribonuclease I, putative [Microscilla marina ATCC 23134]
 gi|123986444|gb|EAY26250.1| exodeoxyribonuclease I, putative [Microscilla marina ATCC 23134]
          Length = 487

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 87/485 (17%), Positives = 160/485 (32%), Gaps = 41/485 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V YD  + G +   D+  +      D  +  +E+  +   K   D +P PEA+    
Sbjct: 21  KNLVFYDTRSSGDNPVFDQILRADTYVTDHAFNLLETHHIEIKK-RPDVVPSPEALIANN 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
             P    + G  E E  R IH+ F+ P++  +GY N+  DD   R  FYRN    Y   W
Sbjct: 80  WLPSDLAK-GSTEYEAMRHIHELFNTPHSYNVGYGNLNNDDLLVRFGFYRNGLTPYTHQW 138

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R DL  ++   Y  +P+ + +     G  S +L D+A ANG+          +  
Sbjct: 139 QRSCRRVDLRTIVTLYYLQAPNALVFSKNAAGKVSLELDDIAQANGLTVGK---GATNAQ 195

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             + L  L+    P L+E    + +K + +  +            G          + A 
Sbjct: 196 TIMELAKLLHNANPMLWEQALGFFDKKEDQNRVKAAQ--------GQIEGVNGALLVDAQ 247

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           +     ++  V      G    +  LD   L   L T + E        +++  L    +
Sbjct: 248 LGADAGFQQPVHVLGQVGKDVHYVPLDDPDL-STLNTKNLE----SRFWVQKKKLTDEKL 302

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ--- 359
           L+   +     F+           N   +    NL  +          +   +VD     
Sbjct: 303 LLNWKHRDPAVFD--AARGALIKRNAAFVANNPNLMQQLGEYVAGKSFAHRNNVDLDAQL 360

Query: 360 LYDGFFADVDRQIMDRILRTA-PEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE-KEK 417
              GF+A  +++           ++   +      +R   +  R   RNF H +      
Sbjct: 361 YQGGFWATNEKRFFAEFHEAPNAQEKMQVVNTAPTQRTAAIGQRILYRNFVHDMGALGMT 420

Query: 418 QDWLEHRKKMLTR---------------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYE 462
            DW       +                   IE +    ++L       + +  L+ A  +
Sbjct: 421 TDWQRFIADSVAPVSDLATLKDYKGGRKRSIERFLADAEALLNAGGLSQHQSSLLEAWVD 480

Query: 463 -YLQW 466
            + + 
Sbjct: 481 VFAES 485


>gi|317035770|ref|XP_001396951.2| hypothetical protein ANI_1_1434134 [Aspergillus niger CBS 513.88]
          Length = 177

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 133/175 (76%)

Query: 32  RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT 91
            ++  I   EVF+CKPADDYLP P AV ITGITPQ+A   G  EA F+ RIH  F+VP T
Sbjct: 3   GEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKT 62

Query: 92  CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151
           CI+GYNN+RFDD  +RNIFYRNFYD Y WSW + NSRWDLLDVMRA YA  P+GI WP  
Sbjct: 63  CILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEN 122

Query: 152 DDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYR 206
           DDG  SF+L+ L  ANGIEH NAHDA ADVYAT+A+  L++ ++P+LF+YL+ +R
Sbjct: 123 DDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHR 177


>gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
          Length = 1450

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/474 (14%), Positives = 138/474 (29%), Gaps = 46/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IES + F       +      V +TGI
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + R           
Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKGTILVAHNAAFDMGFLNTSYARYGIPE------ 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 530 ATNPVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++       LY  +    + +    +   P          +          
Sbjct: 577 TGHLAWIFVKEAMDNHHMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     S   ++ ++L       +       ++  V              +
Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E +  L +     D+        +  + +DV   +Y  
Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDV---IYRK 753

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +           + P+    ++   +D  L    F +        +         + 
Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVDNTNKIADI 807

Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                  K  L   +I   ++++  L    + +  GD   E +   L + L  +
Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861


>gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1450

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/474 (14%), Positives = 136/474 (28%), Gaps = 46/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IES + F       +      V +TGI
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + R           
Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKGTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++       LY  +    + +    +   P          +          
Sbjct: 577 TGHLAWIFVKEAMDNHHMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     S   ++ ++L       +       ++  V              +
Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E +  L +     D+        +  + +D    +Y  
Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +           + P+    ++   +D  L    F +        +         + 
Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVDNTNKIADI 807

Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                  K  L   +I   ++++  L    + +  GD   E +   L + L  +
Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861


>gi|330937753|gb|EGH41635.1| exonuclease I [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 136

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/136 (47%), Positives = 79/136 (58%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D    +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNSRWDLLDVMR 136
            W  GNSRWDL+DV+R
Sbjct: 121 EWQGGNSRWDLIDVLR 136


>gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
 gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
          Length = 1450

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IES + F       +      V +TGI
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + R           
Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKGTILVAHNAAFDMGFLNTSYARYGIPE------ 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 530 ATNPVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++       LY  +    + +    +   P          +          
Sbjct: 577 TGHLAWIFVKEAMDNHHMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     S   ++ ++L       +       ++  V              +
Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E +  L +     D+        +  + +D    +Y  
Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +           + P+    ++   +D  L    F +        +         + 
Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVDNTNKIADI 807

Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                  K  L   +I   ++++  L    + +  GD   E +   L + L  +
Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861


>gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
 gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
          Length = 1450

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/474 (14%), Positives = 136/474 (28%), Gaps = 46/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IES + F       +      V +TGI
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + R           
Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKGTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++       LY  +    + +    +   P          +          
Sbjct: 577 TGHLAWIFVKEAMDNHHMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     S   ++ ++L       +       ++  V              +
Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E +  L +     D+        +  + +D    +Y  
Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +           + P+    ++   +D  L    F +        +         + 
Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVDNTNKIADI 807

Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                  K  L   +I   ++++  L    + +  GD   E +   L + L  +
Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861


>gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
 gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
          Length = 1450

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IES + F       +      V +TGI
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + R           
Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++       LY  +    + +    +   P          +          
Sbjct: 577 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     S   ++ ++L       +       ++  V              +
Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E +  L +     D+        +  + +D    +Y  
Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +           + P+    ++   +D  L    F +        +  +      + 
Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 807

Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                  K  L   +I   ++++  L    + +  GD   E +   L + L  +
Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861


>gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
 gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
          Length = 1450

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IES + F       +      V +TGI
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + R           
Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++       LY  +    + +    +   P          +          
Sbjct: 577 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     S   ++ ++L       +       ++  V              +
Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E +  L +     D+        +  + +D    +Y  
Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +           + P+    ++   +D  L    F +        +  +      + 
Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 807

Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                  K  L   +I   ++++  L    + +  GD   E +   L + L  +
Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861


>gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
 gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
          Length = 1450

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IES + F       +      V +TGI
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + R           
Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++       LY  +    + +    +   P          +          
Sbjct: 577 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     S   ++ ++L       +       ++  V              +
Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E +  L +     D+        +  + +D    +Y  
Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +           + P+    ++   +D  L    F +        +  +      + 
Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 807

Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                  K  L   +I   ++++  L    + +  GD   E +   L + L  +
Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861


>gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 1450

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IES + F       +      V +TGI
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + R           
Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++       LY  +    + +    +   P          +          
Sbjct: 577 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     S   ++ ++L       +       ++  +              +
Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGIEEARNRAKFYDYIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E +  L +     D+        +  + +D    +Y  
Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +           + P+    ++   +D  L    F +        +  +      + 
Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 807

Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                  K  L   +I   ++++  L    + +  GD   E +   L + L  +
Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861


>gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
 gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
          Length = 1450

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IES + F       +      V +TGI
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + R           
Sbjct: 480 TDEMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 533 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++       LY  +    + +    +   P          +          
Sbjct: 577 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     S   ++ ++L       +       ++  V              +
Sbjct: 637 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E +  L +     D+        +  + +D    +Y  
Sbjct: 697 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 753

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +           + P+    ++   +D  L    F +        +  +      + 
Sbjct: 754 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 807

Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                  K  L   +I   ++++  L    + +  GD   E +   L + L  +
Sbjct: 808 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLEKELNSI 861


>gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
 gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
          Length = 1452

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/474 (14%), Positives = 137/474 (28%), Gaps = 46/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IES + F       +      V +TGI
Sbjct: 426 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E  R   +F       I+  +N  FD  +    + R+          
Sbjct: 482 TDGMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARHGIPEAAN--- 534

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 535 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++       LY  +    + +    +   P          +          
Sbjct: 579 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     S   ++ ++L       +       ++  V              +
Sbjct: 639 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E +  L +     D+        +  + +D    +Y  
Sbjct: 699 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 755

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +           + P+    ++   +D  L    F +        +  +      + 
Sbjct: 756 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 809

Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                  K  L   +I   ++++  L    + +  GD   E +   L + L  +
Sbjct: 810 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLKKELNSI 863


>gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
 gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
          Length = 1452

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 69/474 (14%), Positives = 136/474 (28%), Gaps = 46/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IES + F       +      V +TGI
Sbjct: 426 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E  R   +F       I+  +N  FD  +    + R           
Sbjct: 482 TDGMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 534

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 535 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++       LY  +    + +    +   P          +          
Sbjct: 579 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     S   ++ ++L       +       ++  V              +
Sbjct: 639 MSNVEYFERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEV 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E +  L +     D+        +  + +D    +Y  
Sbjct: 699 MPKAVYAPLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDA---IYRK 755

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +           + P+    ++   +D  L    F +        +  +      + 
Sbjct: 756 ILINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFHFLGEETAKEIVVENTNKIADI 809

Query: 424 R------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                  K  L   +I   ++++  L    + +  GD   E +   L + L  +
Sbjct: 810 CEEVIPVKDELYTPKIPGSEDEISELSYTKAKQMYGDPLPEIIQKRLKKELNSI 863


>gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
          Length = 1436

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ +        +   K            + +  +       ++   +++ 
Sbjct: 572 TAYIFIKMVQQMQELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855


>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
 gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
          Length = 1438

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857


>gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 1438

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857


>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 1442

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 481 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 531 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 577

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 578 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 637

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 638 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 695

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 696 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 752 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 805

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 806 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 861


>gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 1438

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857


>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
 gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
          Length = 1438

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857


>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
          Length = 1438

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857


>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
 gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
 gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
 gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
 gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 1438

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857


>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1438

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857


>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1438

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857


>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
 gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
          Length = 1442

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HDGEIIDKFERFS---NPHERLSETIINLTHI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 481 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 531 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 577

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 578 TAYIFIKMVQQMKELGVNNHNEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 637

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 638 SLVQYYYRTPRIPRSLLNEYREGILVGTACDEGELFT--AVMQKDQSEVEKIAKYYDFIE 695

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +  +E    L +     +           ++    +     
Sbjct: 696 VQPPALYQDLMDRELIRDKETLIEIYKRLIEAGESANI----PVIATGNAHYLYEHDAIA 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 752 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDE--FHFLGEEKAHEIVVKNTNELAD 805

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E   ++++ L    + +  G++  + +I+ L + L  +I
Sbjct: 806 RIERVVPIKDKLFTPRMEGANDEIRELSYSNAKKLYGEDLPQIVIDRLEKELASII 861


>gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 1438

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857


>gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 1438

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857


>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
 gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
 gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
          Length = 1436

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855


>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
 gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
 gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
 gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
 gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 1438

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYTNARKLYGEDLPQIVIDRLEKELKSII 857


>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 1436

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855


>gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 1436

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855


>gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1436

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855


>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
          Length = 1436

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYTNARKLYGEDLPQIVIDRLEKELKSII 855


>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 1438

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKFYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857


>gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1435

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855


>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
 gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
          Length = 1442

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/476 (15%), Positives = 141/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 481 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 531 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 577

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   +I++ K        +   K            + +  +       ++   +++ 
Sbjct: 578 TAYIFIKMIQQMKELGVLNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 637

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 638 SLVKYYYRTPRIPRSLLNEYREGILVGTACDEGELFT--AVMQKDQSEVEKIAKYYDFIE 695

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         DH+   E    L +     +           +     +     
Sbjct: 696 VQPPALYQDLMDRELIRDHETLTEIYQRLIEAGESANI----PVIATGNVHYLYEHDAIA 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +  +
Sbjct: 752 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDE--FHFLGEEKAHEIVVRNTNELAE 805

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E   ++++ L    + +  G++  + +I+ L + L  +I
Sbjct: 806 RIERVVPIKDKLFTPRMEGANDEIRELSYSNAKKLYGEDLPQIVIDRLEKELASII 861


>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
 gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
          Length = 1438

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 143/476 (30%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   +I++          +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMIQQMTELGVHNHNEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILVGTACDEGELFT--AVMQKDQAEVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D++   E    L +  +  +           ++    +     
Sbjct: 692 VQPPALYQDLMDRELIRDNETLTEIYQRLIEAGDSVNI----PVIATGNAHYLYEHDAIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      + +    + +  +
Sbjct: 748 RKILIASQPGNPLNRTTLPE----AHFRTTDEMLDE--FHFLGEEKAYEIVVKNTNELAE 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E   ++++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDKLFTPRMEGANDEIRELSYSNAKKLYGEDLPQIVIDRLEKELESII 857


>gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
          Length = 1436

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 690 IQPPALYQDLIDRGLIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855


>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1415

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 475 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 572 TAYIFIKMVQQMKELGVLNHNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 632 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 690 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 799

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 800 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 855


>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
 gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           haemolyticus JCSC1435]
          Length = 1438

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V +  E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDQIIELAAVKV-KDGEIIDKFERFS---NPHEKLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  +
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTES 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        D   K            T +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVTNHKDINQKLSNEDAYKRARPTHVTLIVQTQEGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILVGTACDEGELFT--AVMQRDQSEVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    + +          I      ++    +     
Sbjct: 692 VQPPKLYQDLIDRELIRDTETLYEIYERILKAGES----TGIPVIATGNAHYLYEHDAIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   R++    +++ L    + +  G++  + +I+ L + L  +I
Sbjct: 802 RIEKVIPIKDQLFTPRMDGANEEIRELSYTNAKKLYGEDLPQIVIDRLEKELASII 857


>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
 gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
          Length = 1438

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     ++  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYNKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K   +        + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVLNHNEINKKLSNQDAYKRARPSHVTLIVQNQQGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYFYRTPRIPRSLLDEYREGLLVGTACDEGELFT--AVMQKDQSQVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L            I      ++    +     
Sbjct: 692 IQPPALYQDLIDRELIRDTETLHEIYQRL----IHAGDTAGIPVIATGNAHYLFEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +      H +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLNE--FHFLGEEKAHEIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L+ +I
Sbjct: 802 RIERVVPIKDELYTPRMEGANEEIRELSYANARKLYGEDLPQIVIDRLEKELKSII 857


>gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5]
          Length = 1439

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850


>gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704]
          Length = 1439

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850


>gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96]
          Length = 1439

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850


>gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU121]
          Length = 1438

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 137/476 (28%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHEKLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      +  F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLTDAPEIE----DVLTDFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G++    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVDLTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        D   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVTNHIDINQKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSE 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVTYYYRTPRIPRSLLNEYREGLLVGTACDEGELFT--AVMQRDQSEVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L +     +           ++    +     
Sbjct: 692 VQPPALYQDLIDRELIRDTETLHEIYHRLIEAGKSANI----PVIATGNAHYLYEHDAIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L EL   +      + L    +     
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDEL--HFLGEEKAYELVVTNTNALAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R++    +++ L    + +  G++  + +I+ L + L  +I
Sbjct: 802 RIERVVPIKDKLYTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 857


>gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 1439

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850


>gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6]
          Length = 1439

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850


>gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
 gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
          Length = 1451

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027]
          Length = 1451

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis]
          Length = 1439

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850


>gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2]
          Length = 1439

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDIAKRIVVEN-----PNKV 793

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850


>gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11]
          Length = 1439

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDIAKRIVVEN-----PNKV 793

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850


>gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188]
 gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188]
          Length = 1439

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 468

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 469 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 521

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 522 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 565

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 566 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 626 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 685

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 686 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 742

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 743 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 793

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 794 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 850


>gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
 gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
          Length = 1451

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000]
 gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141]
 gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244]
 gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031]
 gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043]
 gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312]
 gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645]
 gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341]
 gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346]
 gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis 62]
 gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF]
 gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1451

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137]
          Length = 1451

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017]
          Length = 1451

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU144]
          Length = 1438

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGLLIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D++   +    L        +   I      ++    +     
Sbjct: 692 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLYEHDAIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L +  F +      + +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   R++    +++ L    + +  G++  + +I+ L + L  +I
Sbjct: 802 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 857


>gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302]
          Length = 1451

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012]
          Length = 1451

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342]
          Length = 1451

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
 gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
          Length = 1451

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630]
          Length = 1451

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583]
 gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis V583]
 gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B]
 gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A]
          Length = 1451

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDIAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
 gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
          Length = 1451

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 134/477 (28%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IE+ E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + ++          
Sbjct: 481 TDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  L+   G+     H A  D  +
Sbjct: 534 ---PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSES 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +       + +    +   P          +          
Sbjct: 578 TGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  V              +
Sbjct: 638 MSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    +     E ++ L +  +   +        +  + +D    +Y  
Sbjct: 698 MPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKE 416
                          + P     ++   +D  L E          R    N       K 
Sbjct: 755 ILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDIAKRIVVEN-----PNKV 805

Query: 417 KQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 806 ADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 862


>gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU028]
 gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU045]
          Length = 1438

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D++   +    L        +   I      ++    +     
Sbjct: 692 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLYEHDAIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L +  F +      + +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   R++    +++ L    + +  G++  + +I+ L + L  +I
Sbjct: 802 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 857


>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
 gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
          Length = 1442

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 481 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 531 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 577

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 578 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 637

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 638 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 695

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D++   +    L        +   I      ++    +     
Sbjct: 696 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLYEHDAIA 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L +  F +      + +    + +   
Sbjct: 752 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 805

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   R++    +++ L    + +  G++  + +I+ L + L  +I
Sbjct: 806 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 861


>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
 gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
          Length = 1438

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D++   +    L        +   I      ++    +     
Sbjct: 692 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLYEHDAIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L +  F +      + +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   R++    +++ L    + +  G++  + +I+ L + L  +I
Sbjct: 802 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 857


>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1442

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 481 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 531 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 577

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 578 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 637

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 638 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 695

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D++   +    L        +   I      ++    +     
Sbjct: 696 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLYEHDAIA 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L +  F +      + +    + +   
Sbjct: 752 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 805

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   R++    +++ L    + +  G++  + +I+ L + L  +I
Sbjct: 806 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 861


>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
 gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis RP62A]
 gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 1436

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 475 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 525 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 571

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 572 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 632 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D++   +    L        +   I      ++    +     
Sbjct: 690 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLYEHDAIA 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L +  F +      + +    + +   
Sbjct: 746 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 799

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   R++    +++ L    + +  G++  + +I+ L + L  +I
Sbjct: 800 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 855


>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
 gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
          Length = 1438

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/476 (14%), Positives = 139/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHEKLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLTDAPEIE----DVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGF-------- 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G S   ++D +      + D  +            L  LA   G++    H A  D  A
Sbjct: 525 -GPSTNGVIDTLELSRTINTDYGK----------HGLNFLAKKYGVDLTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        D   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVTNHIDINQKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSE 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVTYYYRTPRIPRSLLNEYREGLLVGTACDEGELFT--AVMQRDQSEVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    L +     +           ++    +     
Sbjct: 692 VQPPALYQDLIDRELIRDTETLHEIYHRLIEAGKSANI----PVIATGNAHYLYEHDAIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L EL   +      + L    +     
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDEL--HFLGEEKAYELVVTNTNALAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R++    +++ L    + +  G++  + +I+ L + L  +I
Sbjct: 802 QIERVVPIKDKLYTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 857


>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
 gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
          Length = 1442

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 481 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 531 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 577

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 578 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 637

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 638 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 695

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D++   +    L        +   I      ++    +     
Sbjct: 696 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLFEHDAIA 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L +  F +      + +    + +   
Sbjct: 752 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAN 805

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   R++    +++ L    + +  G++  + +I+ L + L  +I
Sbjct: 806 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 861


>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
          Length = 1438

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/476 (15%), Positives = 143/476 (30%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V +  E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDQIIELAAVKV-KDGEIIDKFERFS---NPHEKLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        D   K            T +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVANHKDINKKLSNEDAYKRARPTHVTLIVQNQDGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILVGTACDEGELFT--AVMQRDQSEVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    + +          I      ++    +     
Sbjct: 692 VQPPKLYQDLIDRELIRDTETLYEIYDRILKAGES----TGIPVIATGNAHYLFEHDAIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +   +  + +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDE--FHFLGEDKAYDIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   R+E    +++ L    + +  GD+  + +I+ L + L  +I
Sbjct: 802 RIEKVIPIKDQLFTPRMEGANEEIRELSYTNAKKLYGDDLPQIVIDRLEKELDSII 857


>gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis FRI909]
          Length = 1438

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 141/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLTDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        +   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVNNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILIGTACDEGELFT--AVMQKDQSEVEKIAKFYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D++   +    L        +   I      ++    +     
Sbjct: 692 VQPPALYQDLMDRELIRDNETLTQIYKRL----IDAGKSANIPVIATGNAHYLFEHDAIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L +  F +      + +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDD--FHFLGEEKAYEIVVTNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   R++    +++ L    + +  G++  + +I+ L + L  +I
Sbjct: 802 KIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELDSII 857


>gi|146344350|ref|YP_001202206.1| putative exodeoxyribonuclease [Pseudomonas fluorescens SBW25]
 gi|146188162|emb|CAM96493.1| putative exodeoxyribonuclease [Pseudomonas fluorescens SBW25]
          Length = 465

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 145/455 (31%), Gaps = 13/455 (2%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M      YD  T G+  A  +  ++  +  +                  D   D EA   
Sbjct: 1   MPLAIHFYDAITAGKSPAEGQIVRYDSLMCEESLTP--QVMEMMVGLRSDVHVDLEAAA- 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
                   L  G  E E +R +H+ F+ PN   IG  N    D + R+ FYRN       
Sbjct: 58  NSELGSMDLLSGHSELECARTVHRHFTRPNCLHIGLGNTTRVDPFLRSTFYRNLLPFPCI 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                +   DL  ++RAI    PD   W    D   +       +            +  
Sbjct: 118 GLPGNSYYLDLETMLRAINILRPDEYPWADSPDPTNTQSFHHFLMWGANVSGENRAVRLR 177

Query: 181 ---VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
                   +   L+                  +  ++ D+++ TP+  V     A +   
Sbjct: 178 DLLADTHASCPKLVGHALKHSSLQSIKSALGLEQGEVSDLESATPVYLVHQSLQAPKGFI 237

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297
            L  PV     Y D +   +L  D+    +         +        G    P+  + L
Sbjct: 238 -LGLPVGVDITYPDILYVADLESDISQLCNPAITSYQSFVRNPSSNPNG----PLVRISL 292

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           ++ P   P+   +     R  ID       +  LR  T L  R K       +S   DV 
Sbjct: 293 SRFPFCAPLSAIRPADAARLSIDIGLVKRRIAQLRSATLLPSRLKETPVLHLSSQPSDVF 352

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
            +++ G F+  D+ +M  + +    +   L +  SD R+ EL  R      P  L+  ++
Sbjct: 353 HRMWAGDFSPKDQVLMQELHQAPMGEWLNLAVGASDGRIYELVVRLLGGIAPEILTSDQR 412

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEG 452
            +   + +   +++        +  L  + +    
Sbjct: 413 SEVDGYTQSRFSKNSAPPLW--VAELLKQAQDGNE 445


>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
 gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
          Length = 1438

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 72/476 (15%), Positives = 144/476 (30%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V +  E I+  E F      +       + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDQIIELAAVKV-KDGEIIDKFERFS---NPNEKLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLVDAPEIE----EVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        D   K            T +  +       ++   +++ 
Sbjct: 574 TAYIFIKMVQQMKELGVANHKDINKKLSNEDAYKRARPTHVTLIVQNQDGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K         
Sbjct: 634 SLVKYYYRTPRIPRSLLNEYREGILVGTACDEGELFT--AVMQRDQSEVEKIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D +   E    + +          I      ++    +     
Sbjct: 692 VQPPKLYQDLIDRELIRDTETLYEIYDRILKAGES----TGIPVIATGNAHYLFEHDAIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L E  F +   +  + +    + +   
Sbjct: 748 RKILIASQPGNPLNRSTLPE----AHFRTTDEMLDE--FHFLGEDKAYDIVVKNTNELAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   R+E    +++ L    + +  GD+  + +I+ L + L  +I
Sbjct: 802 RIEKVIPIKDQLFTPRMEGANEEIRELSYTNAKKLYGDDLPQIVIDRLEKELDSII 857


>gi|257486438|ref|ZP_05640479.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 127

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 58/127 (45%), Positives = 71/127 (55%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D +  +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDNGNS 127
            W  GNS
Sbjct: 121 EWQGGNS 127


>gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 1435

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/476 (13%), Positives = 140/476 (29%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V +  E I+  E F                +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-KNGEIIDKFERFS---NPHEKLTETIKNLTHI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F +     I   +N  FD  +    + R  +        
Sbjct: 475 TDDMLKDAPEIE----EVLTEFKAWVGDAIFVAHNASFDMGFIDTGYERLGFGP------ 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N+  D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 525 STNAVIDTLELSRTINTSY-------------GKHGLNFLAKKYGVELTQHHRAIYDTEA 571

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++ + K        D   K              +  +       ++   +++ 
Sbjct: 572 TAYIFVKMLAQLKALDVHNHQDINKKLSNEDAYKRARPQHVTLIVQNQTGLKNLFKIVSA 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      +FT    ++       +         
Sbjct: 632 SLVQYYYRTPRIPRSLLDEHREGLLIGTACDEGEVFT--AVMQRDQSEVERIAKYYDYIE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D++  +E    + +                 ++    +     
Sbjct: 690 VQPPALYQDLLDRDLIRDNETLVEIYERILKVGETNQI----PVIATGNAHYLHEHDAIA 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L    F +      H +    +    +
Sbjct: 746 RRILIAAQPGNPLNRSTLPE----AHFRTTDEMLD--AFHFLGEERAHQIVVENTRALAE 799

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L    +E    +++ +    + +  G+E  + +I+ L + L+ +I
Sbjct: 800 RIEKVVPIKDKLYTPNMEGANEEIREMSYRHAKQLYGEELPQIVIDRLEKELESII 855


>gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus pseudintermedius ED99]
          Length = 1435

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/476 (13%), Positives = 138/476 (28%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V +  E I+  E F                +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-KNGEIIDKFERFS---NPHEKLTETIKNLTHI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F +     I   +N  FD  +    + R  +        
Sbjct: 475 TDDMLKDAPEIE----EVLTEFKAWVGDAIFVAHNASFDMGFIDTGYERLGFGPSAN--- 527

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 528 ---AVIDTLELSRTINTSY-------------GKHGLNFLAKKYGVELTQHHRAIYDTEA 571

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++ + K        D   K              +  +       ++   +++ 
Sbjct: 572 TAYIFVKMLAQLKALDVHNHQDINKKLSNEDAYKRARPQHVTLIVQNQTGLKNLFKIVSA 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      +FT    ++       +         
Sbjct: 632 SLVQYYYRTPRIPRSLLDEHREGLLVGTACDEGEVFT--AVMQRDQSEVERIAKYYDYIE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D++  +E    + +                 ++    +     
Sbjct: 690 VQPPALYQDLLDRDLIRDNETLVEIYERILKVGETNQI----PVIATGNAHYLHEHDAIA 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T PE     +   +D  L    F +      H +    +    +
Sbjct: 746 RRILIASQPGNPLNRSTLPE----AHFRTTDEMLD--AFHFLGEERAHQIVVENTRALAE 799

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L    +E    +++ +    + +  G+E  + +I+ L + L+ +I
Sbjct: 800 RIEKVVPIKDKLYTPNMEGANEEIREMSYRHAKQLYGEELPQIVIDRLEKELESII 855


>gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
 gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
          Length = 1439

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/477 (14%), Positives = 136/477 (28%), Gaps = 51/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++ +    I++ E F              + +TGI
Sbjct: 422 TYVVFDVETTGLSAIYDNIIELAAVKM-QNGNVIDTFEEF---INPGRPLSATIIDLTGI 477

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E      ++       I   +N  FD  +    + R+ ++       
Sbjct: 478 TDAMLANT-RTEKEVISDFREWV---GDAIFVAHNASFDMGFIDTAYNRHGFE------K 527

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N+  D L++ R ++                 S +L  LA    +     H A  D   
Sbjct: 528 SHNAVIDTLEMSRFLH-------------PNLKSHRLNTLAKRYNVALEQHHRAVYDAET 574

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T AL W+  ++     E  Y       + K    +   P   V      +          
Sbjct: 575 TGALAWIFIKEAAADHEIFYHDELNKDVGKGDAYKQGRPFHAVLLAKNQTGLKDLFKLVS 634

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A +  Y   V     S      ++L               ++       K+        L
Sbjct: 635 ASNIDYYYRVPRIPRSLLSSHRENLLVGSACAGGEVFEALMQKGKVEAEKKAAFYDYLEL 694

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P    K    +    D     + +  + +   ++     A  +  Y +    +  ++  
Sbjct: 695 QPKGVYKPLILDELIQDEATLEKIMKDMLEIGESVNKPVVATGDVHYLNEEDKLYREILI 754

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                   +        + E+            L E  F        + +  +      +
Sbjct: 755 NSIKSNRTKNFPEAHFRSTEE-----------MLQEFAF--LGEETAYQIVVENSNAIAD 801

Query: 423 HR------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                   K  L    IE  + +L  +    + E  G E  E +   L + L+ +I 
Sbjct: 802 SIEFVEPLKDKLYTPTIEGAEQELTDMSFEKAHEIYGKELPEIVEARLDKELKSIIS 858


>gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
          Length = 1440

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/478 (14%), Positives = 134/478 (28%), Gaps = 53/478 (11%)

Query: 4   HFVIYDYETF-GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            +V++D ET  G     D   + A V++  +   IE+ E F       +      + +TG
Sbjct: 413 TYVVFDVETTTGLSAVYDTIIELAAVKM-HKGNVIETFEQF---IDPGHPLSQTTINLTG 468

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +        E E  R   +F       I+  +N  FD  +    + ++         
Sbjct: 469 ITDEMVRGS-KSEEEVLRMFKEF---SEGTILVAHNASFDMGFLNTSYGKHGIPEAAN-- 522

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L++ R +Y                 S +L  L+   G+     H A  D  
Sbjct: 523 ----PVIDTLELSRFLYPHF-------------KSHRLNTLSKKFGVNLEQHHRAIYDSE 565

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           +T  L W+  ++  +  +  +       + +    +   P          +         
Sbjct: 566 STGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLI 625

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y   V     S   ++ + L               ++  V              
Sbjct: 626 SMSNVDYFFRVPRIPRSQLSKLREGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYIE 685

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +MP         +    +     E ++ L +  +   +        +  + +D    +Y 
Sbjct: 686 VMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDA---IYR 742

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEK 415
                           + P     ++   +D  L E          R    N       K
Sbjct: 743 KILVGSMGGANPLNRHSLP----KVHFRTTDEMLTEFQFLGQDVAKRIVVEN-----PNK 793

Query: 416 EKQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
                 E    K  L   +I   + ++  L    + E  GD   E +   L + L  +
Sbjct: 794 VADLCEEVIPVKDDLYTPKIPGSEQEITDLSYNRARELYGDPLPEIVEKRLEKELNSI 851


>gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 1435

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/474 (15%), Positives = 141/474 (29%), Gaps = 43/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V++ ++ + I++ E F      +         +TGI
Sbjct: 419 TYVVFDVETTGLSSVYDKIIELAAVKM-KEGQVIDTFEAF---INPNQPLSSFTTELTGI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E    +  + F       I+  +N  FD  +    + R   ++      
Sbjct: 475 TNAMVEDAPQ-EDVVLKDFYDF---SQNTILVAHNASFDIGFLNKGYERIGIEN------ 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +             +    S +L  LA   G+     H A  D   
Sbjct: 525 TPLPVIDTLELSRMV-------------NPHLKSHRLNTLAKRYGVNLEQHHRAVYDSET 571

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L++ + ++    F   Y ++  NQL +    +   P+     +              
Sbjct: 572 TGYLMYKLLDQALADFGMEYHHQLNNQLGQGDAFKQARPMHATLLVKEQDGLKDLFRLVS 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   +  Q L               ++       +         +
Sbjct: 632 ESNIHYYHRVPRVPRSILNKYRQHLLVGTACSEGEVFTAMMQKGYDEAKELAKYYDFIEI 691

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +      K   E +  L                    ++ +V       
Sbjct: 692 MPKGAYLPLLHDENIHSEKELEEIIANL--------YRMGKELNKPVVATGNVHYLDEKD 743

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQDWL 421
                  Q   +I ++    L  ++   +D  L E  F     A     T S+       
Sbjct: 744 AIYREVVQRSLKINQSRDLVLPQVHFRTTDEMLDEFAFLGEEIAYEVVVTNSQAIADSIE 803

Query: 422 --EHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             +  K  L   RIE  ++++  L    + E  G +  E +   + + L  +I 
Sbjct: 804 TIKVVKDELYAPRIEGAEDEITQLTYQRAHELYGQDLPEIVEKRIEKELNSIIN 857


>gi|330888492|gb|EGH21153.1| exonuclease I [Pseudomonas syringae pv. mori str. 301020]
          Length = 124

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/124 (44%), Positives = 68/124 (54%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    YDYET G +   DR  Q AG+R D +  +I       C+ +DD LP P A  I
Sbjct: 1   MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP      G+ EA+F  R+H   S P TC  GYN +RFDD  +R  FYRNF+D Y  
Sbjct: 61  TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120

Query: 121 SWDN 124
            W  
Sbjct: 121 EWQG 124


>gi|325276506|ref|ZP_08142262.1| exonuclease I [Pseudomonas sp. TJI-51]
 gi|324098353|gb|EGB96443.1| exonuclease I [Pseudomonas sp. TJI-51]
          Length = 105

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 61/105 (58%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT+    +DYET G +   DRP Q AG+R D    +I+     +C+PADD LP P A  +
Sbjct: 1   MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPADDILPHPAACLV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
           TGITPQ     G+ EAEF  R+H   + P TC  GYN +RFDD  
Sbjct: 61  TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEV 105


>gi|330959582|gb|EGH59842.1| putative exodeoxyribonuclease [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 465

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 146/458 (31%), Gaps = 19/458 (4%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDR---QWEKIESTEVFFCKPADDYLPDPEA 57
           M      YD  T G+  A  +      VR      +  +             D   D EA
Sbjct: 1   MPVAIHFYDAITAGKSPAEGQI-----VRYHSLICEGSETPQFLEMMVSLRSDVHVDLEA 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                      L  G  E E ++ +H  F+ PN   IG  N    D + R+ FYRN    
Sbjct: 56  AA-NSELGSMDLLSGHSELECAKTVHDHFTRPNCLHIGLGNTTRVDPFLRSTFYRNLLPF 114

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                   +   DL  ++RAI+   PD   W      A +       +            
Sbjct: 115 PCVGLPGNSHYLDLETMLRAIHILRPDEYPWADSPAPANTHSFHHFLMWGAKVSGGNRAV 174

Query: 178 KADV---YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           +          +   L+                     ++ D+++ TP+  V     + +
Sbjct: 175 RLRELLEDTHASCPKLVGHAIKHSSIESIKSALGLDKGEVSDLESTTPVYLVHQSLPSPK 234

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
               L  PV     Y D +   +L  D+    +         +        G    P+  
Sbjct: 235 GFL-LGLPVGVDITYPDILYVADLESDLSQLCNPSVPTYQGFVRNPTSNPNG----PLVR 289

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
           V L++ P   P+   +     R  ID       +  +R  T L  R K +      S   
Sbjct: 290 VSLSRFPFCAPLSAIRPADASRLSIDIGLVKRRIAQIRSATFLPSRLKEVPVLQLASQPS 349

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
           DV  +++ G F+  D+ +M  + +T   +   L++  SD R  EL  R      P  LS 
Sbjct: 350 DVFHRMWAGDFSLKDQALMRELHQTPMGKWLNLSVGASDGRFHELVVRLLGGIAPEILSS 409

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEG 452
            ++    E+ +  L+++        +  L  + +    
Sbjct: 410 GQRSQVDEYAQSRLSKNSPPPLW--VAELLKQAQDGNE 445


>gi|332686699|ref|YP_004456473.1| DNA polymerase III subunit alpha [Melissococcus plutonius ATCC
           35311]
 gi|332370708|dbj|BAK21664.1| DNA polymerase III alpha subunit [Melissococcus plutonius ATCC
           35311]
          Length = 1450

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 68/479 (14%), Positives = 136/479 (28%), Gaps = 54/479 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + + V++  +   I++ E F       +      + +TGI
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELSAVKM-HKGNVIDTFEQF---INPGHPLSQTTIHLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E        +F       I+  +N  FD  +    + +           
Sbjct: 480 TNEMVSDA-KSEKVVLNMFKKF---SENTILVAHNAAFDMGFLNTSYRKYKIPEAEN--- 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 S +L  LA   G+     H A  D  A
Sbjct: 533 ---PVIDTLELARYLY-------------PTLKSHRLNVLAKKFGVGLEQHHRAIYDSEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  + F   Y       + +    +   P   V      +          
Sbjct: 577 TGHLCWIFLKETKEKFSMNYHDELNMHIGEGDSYKRARPFHAVIIAKTQAGLKNLFKLIS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L               ++  +    +         +
Sbjct: 637 MSNVHYFYRVPRIPRSQLNKLREGLIVGSACSSGEIFEAMMQKGIDEAERRAKFYDYIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    + +   E    L++    L     A  +  Y +    +  ++  
Sbjct: 697 MPKPVYAPLIEQELIKNEEDLEEIIANLVKIGDKLGKPVVATGDVHYLNPEDAIYRKILI 756

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEK 415
                 +     +        L  +    +D  L E          +    N     S K
Sbjct: 757 SSMGGANPLNRHQ--------LPEVYFRTTDEMLTEFQFLGKDVAQKIIVEN-----SNK 803

Query: 416 EKQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                      K  L   +I   ++++++L    + E  GD     +   L + L  +I
Sbjct: 804 IADSCDVIIPVKDELYTPKIPGSEDEIRNLSYTRAKELYGDPLPPIVEKRLKKELNSII 862


>gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
 gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
          Length = 1470

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 142/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++    + +++ E F              + +TGI
Sbjct: 453 TYVVFDVETTGLSAVYDTIIELAAVKM-ENGQVVDTFESF---IDPGRPLSATIINLTGI 508

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      + +F       ++  +N  FD  +    + +   D       
Sbjct: 509 TDDMLKGSDDIE----TVLKRFKEWCGDAVLVAHNASFDMGFLNTAYSKAGID------K 558

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 559 AENAVIDTLELARFLYPHF-------------KNHRLNTLTKKFNIVLEQHHRAVFDAEA 605

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++ E     +  N + +    +   P         A           
Sbjct: 606 TAYLAWKLIKDANEMHEITNHNQLNNYMGEGEAYKRARPFHATIYAQNAVGLKNLFKLIS 665

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    +         +
Sbjct: 666 QSNINYFFRVPRIPRSQLKKLREGLIIGTACNQGELFEAMMQKGMQEAERVAEFYDFIEV 725

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E +  + +          A  N  Y      +  ++  
Sbjct: 726 QPKPVYAPLIERELVRDEKALEEIIKNIVKVGEKTGKPVVATGNVHYKDPHDKIYRKI-- 783

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
             F+      ++R       +L  ++   +   L E  F          +   +     D
Sbjct: 784 LIFSQGGANPLNR------AELPEVHFRSTSEMLEEFAF--LGEEKAEEIVVTNSNLVAD 835

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468
           W+E     K  L   +IE  +++++++S +       E L       L + L+ +I
Sbjct: 836 WIEDVKPIKDELYTPKIEGAEDEVRNMSYDMAHHLYGENLPEIVEARLEKELKSII 891


>gi|227544953|ref|ZP_03975002.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300910016|ref|ZP_07127476.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
 gi|227185064|gb|EEI65135.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300892664|gb|EFK86024.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
          Length = 1443

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/477 (12%), Positives = 136/477 (28%), Gaps = 47/477 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +VI+D ET G     D+  + + V++ +    +E  + F       +    +   +T 
Sbjct: 424 QTYVIFDVETTGLSAIYDKVIELSAVKM-QDGNVLERFDEF---IDPGFPLSEQTTNLTS 479

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +        E E  +    F      CII  +N+ FD  +    + R+         
Sbjct: 480 ITTEMVQGS-KTEEEVFQMFKDF---CKGCIIAGHNVAFDMGFMNTGYERHQMGKIA--- 532

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + R +Y                  ++L  L+    +   + H A  D  
Sbjct: 533 ---EPVIDTLPLARFLY-------------PDMRGYRLNTLSKKFKVALEHHHRANYDSE 576

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L++   +     ++  Y       + +    ++  P          +         
Sbjct: 577 ATGHLLYKFLKDAEARYDVKYVDDLNKHMEENNAYRHARPFHVTIFAQTQAGLKNLFKLV 636

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y   V     +   +  + L               ++      +++        
Sbjct: 637 SLSNVEYFYRVPRIPRTVLTKYREGLLLGTACSSGEVFTAMMEKGYDQALEKARYYDFIE 696

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P         +    D         +L+    L D  +            D    +Y 
Sbjct: 697 VQPKPNYAPLLEQHVIADEDHLE---DILKNMVKLGDELEKTVVATGDVHYLDPHDGIYR 753

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
               +               +   ++   +D  L E  F        H L    S K   
Sbjct: 754 KILINSQGGANPLNRT----ERPEVHFRTTDEMLNEFAF--LGEEKAHELVVENSNKIAA 807

Query: 419 DWLEHR---KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
           +  ++    K  L    ++  + ++Q    + + ++ GD   + + + +   L  ++
Sbjct: 808 EIDDNIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPLPQLVQDRIELELNSIV 864


>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 1437

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/477 (15%), Positives = 139/477 (29%), Gaps = 52/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F                +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HDGEIIDKFERFS---NPHERLSDTIKNLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +    +       E    + +F       I   +N  FD  +    + R    +Y     
Sbjct: 477 SDDMLVDAP----EIDDVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERAGLGNYTNG-- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 531 ----VIDTLELSRTINTEF-------------GKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ +        D                + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMLKQVEELGVTNHKDINQSLSNEDAYKRARPSHITILVQNQDGLKNLFKIVSE 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      +FT    ++       +         
Sbjct: 634 SLVTYYYRTPRIPRSLLDEYREGLLIGTACDEGEVFT--AVMQKDQSQVERIAKYYDYIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P    +         D+K   E    LL+    +     A  N  Y +          
Sbjct: 692 VQPPALYQDLIDRELIRDNKTMEEIYERLLKAGEAVNVPIVATGNVHYLNE-----HDSI 746

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEK 417
                   +        T PE     +   +D  L    F +      H +    ++   
Sbjct: 747 ARKILIASQPGNPLNRSTLPE----AHFRTTDEMLD--AFHFLGEEKAHEIVVENTQALA 800

Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                    K  L   R+E    +++ +S E      GD+  + +I+ L + L+ +I
Sbjct: 801 DRIERVVPIKDKLYTPRMEGANEEIREMSYENARKLYGDDLPQIVIDRLEKELESII 857


>gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
 gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
          Length = 1144

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 127 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 182

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 183 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 232

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 233 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 279

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++    +     + + +    +   P         A           
Sbjct: 280 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 339

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K         +
Sbjct: 340 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 399

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E L  + R          A  N  Y         ++Y 
Sbjct: 400 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 455

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 456 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 509

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468
           W+E     K  L   +I+  +++++++  +  ++    K   ++ A L + L+ +I
Sbjct: 510 WMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 565


>gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 1437

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/446 (13%), Positives = 116/446 (26%), Gaps = 47/446 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     +   +   V++  +   +     F       +        +TGI
Sbjct: 420 TYVIFDVETTGLSAVYNTIIEIGAVKM-HKGNVVGEFSEF---LNPGHHLSSFTTELTGI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E  +    F       I+  +N  FD  +    + RN          
Sbjct: 476 TDSMVANA-RPEPEVMQDFLDF---CQGTILVAHNASFDVGFIDAAYQRNGLP------T 525

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L++ R +Y                 SF+L  L+    +   + H A  D  +
Sbjct: 526 IENPVIDTLELARYLY-------------PHLKSFRLNTLSKHFNVSLEHHHRAIYDATS 572

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T AL W+  ++  +  + +Y  +    + +    +   P                     
Sbjct: 573 TGALAWIFVKEAKESHDMVYHDQLNRDIGQGDAYKKGRPFHATILAKNQKGLKDLFKLVS 632

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A +  Y   V     S      + L               ++       K         +
Sbjct: 633 ASNVDYFHRVPRIPRSLLKEHREHLLIGSACSEGEVFTAAMQKGKETAKKFAEFYDYLEI 692

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P    +     +  I+++     +  L      L     A  +  Y +    +  ++  
Sbjct: 693 QPKASYEPLLRNQDIINNEALENIINDLVDIGDELGITVVATGDAHYLNPEDKIYREILI 752

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                   +   R                +   L +  F          L    S     
Sbjct: 753 NSIKSNRSKYFPRAH-----------FRTTKEMLDDFAF--LGEEKAFELVVTNSNAIAD 799

Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442
                E     L    I+  +  +++
Sbjct: 800 SIEFVEPIHDKLYTPHIDGAEESIRN 825


>gi|148543926|ref|YP_001271296.1| DNA polymerase III PolC [Lactobacillus reuteri DSM 20016]
 gi|184153322|ref|YP_001841663.1| DNA polymerase III PolC [Lactobacillus reuteri JCM 1112]
 gi|227364835|ref|ZP_03848882.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|325682539|ref|ZP_08162056.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
 gi|166918295|sp|A5VJD5|DPO3_LACRD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|148530960|gb|ABQ82959.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           reuteri DSM 20016]
 gi|183224666|dbj|BAG25183.1| DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112]
 gi|227070098|gb|EEI08474.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|324978378|gb|EGC15328.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
          Length = 1443

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/477 (12%), Positives = 136/477 (28%), Gaps = 47/477 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +VI+D ET G     D+  + + V++ +    +E  + F       +    +   +T 
Sbjct: 424 QTYVIFDVETTGLSAIYDKVIELSAVKM-QDGNVLERFDEF---IDPGFPLSEQTTNLTS 479

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +        E E  +    F      CII  +N+ FD  +    + R+         
Sbjct: 480 ITTEMVQGS-KTEEEVFQMFKDF---CKGCIIAGHNVSFDMGFMNTGYERHQMGKIA--- 532

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + R +Y                  ++L  L+    +   + H A  D  
Sbjct: 533 ---EPVIDTLPLARFLY-------------PDMRGYRLNTLSKKFKVALEHHHRANYDSE 576

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L++   +     ++  Y       + +    ++  P          +         
Sbjct: 577 ATGHLLYKFLKDAEARYDVKYVDDLNKHMEENNAYRHARPFHVTIFAQTQAGLKNLFKLV 636

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y   V     +   +  + L               ++      +++        
Sbjct: 637 SLSNVEYFYRVPRIPRTVLTKYREGLLLGTACSSGEVFTAMMEKGYDQALEKARYYDFIE 696

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P         +    D         +L+    L D  +            D    +Y 
Sbjct: 697 VQPKPNYAPLLEQHVIADEGHLE---DILKNMVKLGDELEKTVVATGDVHYLDPHDGIYR 753

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
               +               +   ++   +D  L E  F        H L    S K   
Sbjct: 754 KILINSQGGANPLNRT----ERPEVHFRTTDEMLNEFAF--LGEEKAHELVVENSNKIAA 807

Query: 419 DWLEHR---KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
           +  ++    K  L    ++  + ++Q    + + ++ GD   + + + +   L  ++
Sbjct: 808 EIDDNIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPLPQLVQDRIELELNSIV 864


>gi|194467743|ref|ZP_03073729.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
 gi|194452596|gb|EDX41494.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
          Length = 1443

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/477 (12%), Positives = 137/477 (28%), Gaps = 47/477 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +VI+D ET G     D+  + + V++ +    +E  + F       +    +   +T 
Sbjct: 424 QTYVIFDVETTGLSAIYDKVIELSAVKM-QDGNVLERFDEF---IDPGFPLSEQTTNLTS 479

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +        E E  +    F      CII  +N+ FD  +    + R+         
Sbjct: 480 ITTEMVQGS-KTEEEVFQMFKDF---CKGCIIAGHNVAFDMGFMNTGYERHQMGKIA--- 532

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + R +Y                  ++L  L+    +   + H A  D  
Sbjct: 533 ---EPVIDTLPLARFLY-------------PDMRGYRLNTLSKKFKVALEHHHRANYDSE 576

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L++   +     ++  Y       + +    ++  P          +         
Sbjct: 577 ATGHLLYKFLKDAEARYDVKYVDDLNKHMEENNAYRHARPFHVTIFAQTQAGLKNLFKLV 636

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y   V     +   +  + L               ++      +++        
Sbjct: 637 SLSNVEYFYRVPRIPRTVLTKYREGLLLGTACSSGEVFTAMMEKGYDQALEKARYYDFIE 696

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P         +    D +       +L+    L D  +            D    +Y 
Sbjct: 697 VQPKPNYAPLLEQHVIADEEHLE---DILKNMVKLGDELEKTVVATGDVHYLDPHDGIYR 753

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
               +               +   ++   +D  L +  F        H L    S K   
Sbjct: 754 KILINSQGGANPLNRT----ERPEVHFRTTDEMLNKFAF--LGEEKAHELVVENSNKIAA 807

Query: 419 DWLEHR---KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
           +  ++    K  L    ++  + ++Q    + + ++ GD   + + + +   L  ++
Sbjct: 808 EIDDNIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPLPQLVQDRIELELNSIV 864


>gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B]
 gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho
           africanus TCF52B]
          Length = 1365

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 77/478 (16%), Positives = 151/478 (31%), Gaps = 52/478 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + ++D ET G +   D   +F  V+  +  + I++ + F  KP  D   +     +TGIT
Sbjct: 348 YTVFDLETTGTNARFDEIIEFGAVKY-KDGKIIDTFKSF-VKPNKD--INDFTQKLTGIT 403

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    +E E   +  +F       ++  +N  FD  +     YR  YD        
Sbjct: 404 NDMLKDAPGIE-EVVPKFLEFIE---GTVLVAHNADFDYGFI-REVYRKMYD-------- 450

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +     LD ++         ++         SF L  L     +     H A  D   T
Sbjct: 451 KDLIMPYLDTLKLSKVILKGKVK---------SFGLGKLVEYFKLGPFKHHRAFEDASVT 501

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L   + E   K+     +  NK +    I       + +   +    +     +  + 
Sbjct: 502 AELFGKLVELLGKMGIKSLNDINKLKAGTSISSIRTKRVFNHITILVKDKIGLKNLYKLV 561

Query: 245 W--HPRYKDSVIGCNLSGDMRVFQDL------DSVQLAKRLFTSHDELKGLVPVPIKEVH 296
              H +Y   V     +      + L      +  ++ + L  S  + + +    +KE  
Sbjct: 562 SDAHVKYFKYVPFVPKNVLKEYKEGLIFGTGCEQGEIFEALKGSATDEEIIE--LLKEYD 619

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD- 355
             +   L  I    KE  +          + L +      +              +    
Sbjct: 620 YVEIFPLSTIVSVNKEQAKEIFKRLYFLAKRLKM----PVVMVDNAHYLEPEDIKARHVL 675

Query: 356 -VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
               +  +    D+  +     LRT  E L      F D ++     R      P+ +  
Sbjct: 676 LSPKEKSNPHDEDLRDKDAQLYLRTTDELLKEAIEIFGDEKIA----REVVIENPNKI-- 729

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
            +  + +   KK L    I+  +  +++L    + E  GD   E +   L + L+ +I
Sbjct: 730 ADMIEDIAPVKKKLHPPIIDGAEENVRNLSLKRAKELYGDPLPEVIEKRLEKELKSII 787


>gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
           praevalens DSM 2228]
          Length = 1404

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 72/474 (15%), Positives = 149/474 (31%), Gaps = 51/474 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+++D ET G + +     +   V+  +  +KI   E F            +   ITGI 
Sbjct: 392 FIVFDLETTGLNPSQHEIIEIGAVKY-QGGKKIAEFESF---INPGVRIPAKITEITGIN 447

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       +E    + I+ F     T ++  +N  FD  + R    +   +       +
Sbjct: 448 DRMVKNAPGLE----KVINDFIEFAGTGVLVAHNADFDYGFIRTALEKLEIE------KD 497

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L + RA+                + + KL  LA   G++  N H A  D  AT
Sbjct: 498 DYTVLDTLGLSRAV-------------VKDSKNHKLNTLAKYFGVDLENHHRALDDANAT 544

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS--RSNTALIAP 242
             ++  + E       +  +  N       ID +++ P   V         ++   LI+ 
Sbjct: 545 AEVLAKLLELIKDDGCHNLNKIN--DYISKIDWKDLRPFHAVILAENKKGLKNLYQLISI 602

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNKC 300
              +  YK   I  ++    R    + S   A +++ +  +++ +  +    K     + 
Sbjct: 603 SHLNNFYKKPRILKSVLLQHREGLIIGSACEAGQIYKAFVNNKPRSEIKKIAKLYDYLEL 662

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             L    +             +   +   L   Q   +                     L
Sbjct: 663 QPLGNNQFLIPAKVNSKDDLKEINKKIYKL--GQELDKPVVATTDAHFLDPKDSIFREIL 720

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
             G   +   Q      RT  E LS                +  A+        +     
Sbjct: 721 QTGQGFNDADQQPPIYYRTTNEMLSEFA---------YFGKK-IAKEIVIDNPNQIADRI 770

Query: 421 LEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
            +       L    IE  + +++ +    + ++ G++  + +I+ L + L  +I
Sbjct: 771 EKIKPIPDGLFTPEIEGAEAEIREMSYNRAHKFYGEKLPQLVIDRLEKELSSII 824


>gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988]
          Length = 1444

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 142/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++    +     + + +    +   P         A           
Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K         +
Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E L  + R          A  N  Y         ++Y 
Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468
           W+E+    K  L   +I+  +++++++  +  ++    K   ++ A L + L+ +I
Sbjct: 810 WMENLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865


>gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165]
 gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S]
 gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161]
 gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900]
 gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003]
 gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165]
 gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900]
 gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1444

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 142/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++    +     + + +    +   P         A           
Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K         +
Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E L  + R          A  N  Y         ++Y 
Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468
           W+E+    K  L   +I+  +++++++  +  ++    K   ++ A L + L+ +I
Sbjct: 810 WMENLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865


>gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e]
 gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e]
          Length = 1444

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 142/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++    +     + + +    +   P         A           
Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K         +
Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E L  + R          A  N  Y         ++Y 
Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468
           W+E+    K  L   +I+  +++++++  +  ++    K   ++ A L + L+ +I
Sbjct: 810 WMENLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865


>gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561]
          Length = 1444

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 142/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++    +     + + +    +   P         A           
Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K         +
Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E L  + R          A  N  Y         ++Y 
Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468
           W+E+    K  L   +I+  +++++++  +  ++    K   ++ A L + L+ +I
Sbjct: 810 WMENLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865


>gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437]
          Length = 1099

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 72/462 (15%), Positives = 144/462 (31%), Gaps = 53/462 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D   + A V+V +  E I+  E F                +TG
Sbjct: 414 DTYVVFDVETTGLSAVHDEIIELAAVKV-KDGEIIDRFESF---INPHRKLTATITELTG 469

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  +       E S  + ++       ++  +N RFD  + +    +          
Sbjct: 470 ITDEMVVDAP----ELSEVLPRYLEFIEGTVLVAHNARFDMGFLQAACKKTGC------Q 519

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              +   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 520 PVDHPVLDTLELGRFLY-------------PRLKNHRLNTLCKQFDIELTQHHRAIYDAE 566

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+W + +   +      D  N+    + ++      ++ +       ++   L++ 
Sbjct: 567 ATGFLLWRMLQDCIERKIVRLDQLNEYTGERDLNRLRPFHVIVLVKNHIGLKNLYKLVSL 626

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L    R    + S      LF     L+       +         
Sbjct: 627 SHLKYFYRTPRIPRSLLEKHREGLIIGSGCEKGELF--EAALQKSPEEVEEMARFYDYLE 684

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-----RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           + P+D  +    +      +   +   LL     +    +       Y   + +  +D+ 
Sbjct: 685 IQPVDVNRHLLEKEIVASEEHLRQANQLLLKIGDKLNKPVVATSNTHYLNKWEAIYRDIL 744

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF---RYRARN------F 408
           +    G F +           T  E L+  +    + R  E+     R  A        F
Sbjct: 745 AFNQTGGFRNKGPLSPAHFRTTD-EMLAEFSY-LGEERAREVVVVNPRKIADEIEELKPF 802

Query: 409 PHTL-------SEKEKQDWLEHRKKMLTRSRIEE-YKNKLQS 442
           P  L       S+ E +       + L  + + E  + +L+ 
Sbjct: 803 PEGLHTPIIEGSDDELRRICYETAENLYGNPLPEIVEQRLEK 844


>gi|332311763|gb|EGJ24858.1| DNA polymerase III polC-type [Listeria monocytogenes str. Scott A]
          Length = 1457

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 440 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 495

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 496 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 545

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 546 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 592

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++    +     + + +    +   P         A           
Sbjct: 593 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 652

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K         +
Sbjct: 653 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 712

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E L  + R          A  N  Y         ++Y 
Sbjct: 713 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 768

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 769 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 822

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468
           W+E     K  L   +I+  +++++++  +  ++    K   ++ A L + L+ +I
Sbjct: 823 WMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 878


>gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes
           Clip81459]
 gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 1444

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++    +     + + +    +   P         A           
Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K         +
Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E L  + R          A  N  Y         ++Y 
Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468
           W+E     K  L   +I+  +++++++  +  ++    K   ++ A L + L+ +I
Sbjct: 810 WMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865


>gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220]
          Length = 1444

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++    +     + + +    +   P         A           
Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K         +
Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E L  + R          A  N  Y         ++Y 
Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468
           W+E     K  L   +I+  +++++++  +  ++    K   ++ A L + L+ +I
Sbjct: 810 WMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865


>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1438

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/476 (13%), Positives = 137/476 (28%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V +  E I+  E F                +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-KDGEIIDKFERFS---NPHERLSETIKNLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +    +    +E      + +F S     I   +N  FD  +    +             
Sbjct: 477 SDDMLVDAPEIE----EVLTEFKSWVGDAIFVAHNASFDMGFIDTGYEHVGI-------- 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G S   ++D +      + +  +            L  LA   G+E    H A  D  A
Sbjct: 525 -GASTNGVIDTLELSRTINTEYGK----------HGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ +        D                  +  +       ++   +++ 
Sbjct: 574 TAYMFIKMLKQLEALGVHNHQDINTSLSNEDAYKRARPNHVTLIVQNQDGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + S      +FT    ++       +         
Sbjct: 634 SLVQYYYRTPRIPRSLLDEYREGILVGSACDEGEVFT--AVMQKDQSQVERIAKYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D++   E    L            I      ++    +     
Sbjct: 692 VQPPALYQDLIDRELVRDNETLHEIYNRL----IRAGDVNNIPVIATGNAHYLNEHDAIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T P      +   +D  L EL   +      + L    +     
Sbjct: 748 RKILIAAQPGNPLNRSTLP----KAHFRTTDEMLDEL--HFLGEEKAYELVVQNTNDLAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ +S +      GD+  + +I+ L + L+ +I
Sbjct: 802 KIERVVPIKDELFTPRMEGANEEIREMSYDNAKALYGDDLPQIVIDRLEKELESII 857


>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
 gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
          Length = 1438

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 136/476 (28%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V    E I+  E F              + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDQIIELAAVKV-YDGEIIDKFERFS---NPHQKLSETIINLTHI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E    + +F       I   +N  FD  +    + R  +        
Sbjct: 477 TDDMLTDAP----EIDEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERIGFGP------ 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R I                     L  LA   G+E    H A  D  A
Sbjct: 527 STNGVIDTLELSRTINT-------------EYGKHGLNFLAKKYGVELTQHHRAIYDTEA 573

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ K        D   K            + +  +       ++   +++ 
Sbjct: 574 TAYIFIKMLQQMKELGVSNHKDINKKLSNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSA 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + +      LFT    ++       K  +      
Sbjct: 634 SLVKYYYRTPRIPRSLLDEFREGLLIGTACDEGELFT--AVMQRDQSEVEKVANYYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +         D     E    L +          I      ++    +     
Sbjct: 692 VQPPALYQDLLDRELIRDTATLHEIYQRLLKA----GEQANIPVIATGNAHYLNEHDGIA 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                  +        T P      +   +D  L E  F +      + +    +     
Sbjct: 748 RKILIASQPGNPLNRSTLP----KAHFRTTDEMLDE--FHFLGEEKAYEIVVKNTNALAD 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E    +++ L    + +  G++  + +I+ L + L  +I
Sbjct: 802 RIERVVPIKDQLFTPRMEGANEEIRELSYSNAKKLYGEDLPQIVIDRLEKELASII 857


>gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816]
          Length = 1444

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 533 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++    +     + + +    +   P         A           
Sbjct: 580 TAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 639

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K         +
Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 699

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E L  + R          A  N  Y         ++Y 
Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 755

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNANLVVD 809

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSL--SGEYKGDEGKE-GLINA-LYEYLQWVI 468
           W+E     K  L   +I+  +++++++  +  ++    K   ++ A L + L+ +I
Sbjct: 810 WMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSII 865


>gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
 gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
          Length = 1427

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 147/479 (30%), Gaps = 63/479 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +   D+  +   VR+ +  +  +    F           P  V +TGIT 
Sbjct: 416 VVLDIETTGLNAGTDKIIEIGAVRI-KDGKYKDEFSSF---INPHVPIPPSIVNLTGITD 471

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                    E +  +R  +F       ++  +N +FD  + R    +             
Sbjct: 472 DMVSNAP-DEGDVLQRFMEF---AGDAVLVAHNAQFDMGFIRQHGQKYNL-------KFA 520

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           N   D L + R                 G   +KL  LA    I+  N H A  D     
Sbjct: 521 NPVLDTLTLAR-------------QLFKGLKHYKLDTLAHHLHIDMDNHHRAVDDARTAA 567

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245
            +++   +K  ++        N+     + +   +   V +    G  ++   LI+    
Sbjct: 568 EILFRCMDKLSEMGCQFLSDLNRVFGSSISNNSELYHAVILVKNQGGLKNLYKLISVSHI 627

Query: 246 HPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
              Y+   I  ++    R         D+ +L + L  S  +      V           
Sbjct: 628 DYFYRKPRIPKSVLVQYRDNLIIGSGCDAGELYQALIKSAADSVIKDIVAF-----YDYL 682

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            + P+D       E    D ++ ++    + +                  ++ DV     
Sbjct: 683 EIQPLDNAAHLIKEGKVADRQQLMDINKRIYE--------LGKLFDKPVVATGDVHFLDP 734

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYR----ARN----FPHTLS 413
              +             +  +Q + L    +D  L E  F+Y      R      P+ ++
Sbjct: 735 HDEYFRRILMHGQGF--SDADQQAPLYFKTTDEMLEE--FKYLGDDACREVVISNPNAIA 790

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                ++++          I+  + ++Q+++        GD     +   L + L  +I
Sbjct: 791 S--MIEFVKPIPDEFYPPHIDRAEEEIQNMALSNALAIYGDPLPPIVKQRLDKELNAII 847


>gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes L99]
          Length = 1443

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 139/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 426 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 482 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 532 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++ +  +     + + +    +   P         A           
Sbjct: 579 TAYLAWKLIKDAKEMHDIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K         +
Sbjct: 639 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E L  + R          A  N  Y         ++Y 
Sbjct: 699 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 754

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 755 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNSNLVVD 808

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468
           W+E     K  L   +I+  +++++++S E       E L       L + L+ +I
Sbjct: 809 WMEDLKPIKDELYTPKIDGAEDEVRNMSYEMAHQLYGENLPEIVEARLEKELKSII 864


>gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
 gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
          Length = 1445

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/475 (14%), Positives = 137/475 (28%), Gaps = 45/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +     S + F       +      + +TGI
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKM-HKGNVEASFDEF---IDPGHPLSNTTINLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       ++  +N  FD  +    + +           
Sbjct: 480 TDEMVRGS-KSEEEVLRLFREF---SEGAVLVAHNASFDMGFLNTSYRKYGIPEAEN--- 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 533 ---PVIDTLELARYLY-------------PEFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAP 242
           T  L W+  ++  +  +          +      +   P    +         N   +  
Sbjct: 577 TGHLAWIFVKEAMEHHKMFLHEDLNRHVGGENSYRAARPFHATILVQTQKGLKNLFKLIS 636

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           ++    + D V     S  +++ + L       +       ++  V    K         
Sbjct: 637 MSNVTYFHDKVPRIPRSELVKLREGLIVGSGCDKGEVFVAMMQKGVEAAKKLAEFYDYIE 696

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           +MP         +    +     E +  L++    L     A  N  Y +        +Y
Sbjct: 697 IMPKPVYAPLIEQELIKNEADLEEIITNLIQIGDELNKPVVATGNVHYLNEED----SIY 752

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQD 419
                +           + P     ++   +D  L E  F    RA+    T        
Sbjct: 753 RKILINSMGGANPLNRHSLP----KVHFRTTDDMLREFDFLGSERAQEVVVTNPNALVDR 808

Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                  K  L   +I   + ++  L    + E  GD   + +   L + L  +I
Sbjct: 809 CETVVPVKDKLYTPKIPGSEEEITQLSYTRAKELYGDPLPDIVEKRLEKELHSII 863


>gi|213023524|ref|ZP_03337971.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 131

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/107 (60%), Positives = 78/107 (72%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +DYETFG   ALDRPAQFA +R D  +  I   EVF+CKPADDYLP P AV IT
Sbjct: 9   QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
           GITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RN
Sbjct: 69  GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRN 115


>gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL F2-208]
          Length = 1447

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 138/476 (28%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 430 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 485

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 486 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 536 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 582

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++ +  +     + + +    +   P         A           
Sbjct: 583 TAYLAWKLIKDAKEMHDIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 642

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K         +
Sbjct: 643 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 702

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D     E L  + R          A  N  Y         ++Y 
Sbjct: 703 QPKPVYAPLIERELVRDETALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 758

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 759 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNSNLVVD 812

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468
           W+E     K  L   +I+  +++++++S E       E L       L + L+ +I
Sbjct: 813 WMEDLKPIKDELYTPKIDGAEDEVRNMSYEMAHQLYGENLPEIVEARLEKELKSII 868


>gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
 gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
          Length = 1367

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 140/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 426 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 482 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 532 AENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++ +  +     + + +    +   P         A           
Sbjct: 579 TAYLAWKLIKDAKEMHDIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLIT 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K         +
Sbjct: 639 MSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEV 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E L  + R          A  N  Y         ++Y 
Sbjct: 699 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIYR 754

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 755 KILIHSQGGANPLNRA----ELPDVHFRTTDEMLKEFAF--LGEEKAKEIVVTNPNVVVD 808

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
           W+E     K  L   +I+  +++++     ++ +  G+   E +   L + L+ +I
Sbjct: 809 WMEDLKPIKDELYTPKIDGAEDEVRDMSYAMAHQLYGENLPEIVEARLEKELKSII 864


>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 1440

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/476 (16%), Positives = 143/476 (30%), Gaps = 54/476 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G +   D   + A V+V +  + +++          +   DP+ V +TGIT
Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKV-KAGQIVDTYATL---IDPERSLDPKIVELTGIT 482

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E      QF       ++  +N  FD  +      R   D +      
Sbjct: 483 NEMVAGQPK-LREALDGFRQF---ARGAVLVAHNAEFDVGFLNQCAERLGLDPWE----- 533

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R +Y              G  ++KL+ L     ++ VN H A AD  AT
Sbjct: 534 -QPVIDTLALARVLY-------------PGEKNYKLKTLTQKFSVDLVNHHRALADSEAT 579

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +   + +       +     N   LR  IDI  + P      +               
Sbjct: 580 AKVFVHMLKDAKARGIHNLLDMN--HLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSI 637

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPIL 303
            H +Y   V     S   R  + L      ++        +G     I   +       +
Sbjct: 638 AHTQYLHRVPRIPKSALARHREGLLIGTACRQGELVEAFFRGKSEDEIDTLLEFYDYLEI 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P+ + +    E      ++  E L  + +     ++        +     D   +    
Sbjct: 698 QPVSHYEPLVREGVVASFEQVRELLRNIVEIGKRLNKPVVATGDVHYLDEHDAIFREIFL 757

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
               +D +               L+   +D  L E  F         T+     +     
Sbjct: 758 QSQKLDTKQPP------------LHFRTTDEMLEEFAF--LGEEDARTVVIDNPRRLAAL 803

Query: 424 RK------KMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
                     L    IE  +++++ L+ +      GD   E +   L   L  +I 
Sbjct: 804 CDDVKPIPDELHTPVIEGAEDEIRRLAYDKAKRIYGDPLPELVEKRLERELNAIIS 859


>gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
 gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
          Length = 1449

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 138/479 (28%), Gaps = 53/479 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            ++++D ET G     D   + A VR+  +     S + F       +      V +TGI
Sbjct: 422 TYIVFDVETTGLSAVYDTIIELAAVRM-HKGNVEGSFDEF---IDPGHPLSRTTVELTGI 477

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + +           
Sbjct: 478 TDEMVRGS-KSEEEVLRLFREF---SEGAILVAHNASFDMGFLNTSYRKYGIPEAEN--- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 531 ---PVIDTLELARYLY-------------PEFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 574

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAP 242
           T  L W+  ++  +  + L        +      +   P    +     A   N   +  
Sbjct: 575 TGHLAWIFVKEAMEKHDMLLHEDLNRHVGGENSYKAARPFHATILARTQAGLKNLFKLIS 634

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           ++    + D V     S  +++ + L       +       ++  V    +         
Sbjct: 635 MSNVKYFHDKVPRIPRSELVKLREGLLVGTACDKGEVFVAMMQKGVDAARELAKFYDYIE 694

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +MP                K   + +  L Q      +        +  + +D    +Y 
Sbjct: 695 VMPKAVYAHLLETELVKSEKDLEDIIRNLIQMGEELGKIVVATGNAHYLNEEDA---IYR 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPHTLSEK 415
               +           + P+    ++   +D  L       PE+       N       K
Sbjct: 752 KVLINSMGGANPLNRHSLPD----VHFRTTDEMLTAFQFLGPEVAKEIVVTN-----PNK 802

Query: 416 EKQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                 +    K  L   +I   + ++  L    + E  GD   E +   L + L  +I
Sbjct: 803 IADLCEKVIPVKDDLYTPKIPGSEQEITDLSYNRAKELYGDPLPEIVEKRLKKELDSII 861


>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
 gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1433

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/478 (13%), Positives = 148/478 (30%), Gaps = 55/478 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G +   DR  +   V+V R  + ++    F              V +TG
Sbjct: 420 DDFVVFDIETTGLNPQQDRITEIGAVKV-RNGQIVDRFSAF---VNPGVSIPSFIVKLTG 475

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         +E    + +++F       ++  +N  FD  + ++              
Sbjct: 476 ITNDMVKDAPPIE----QVLNEFMEFIQGSVLVAHNANFDVGFIKHNAK-------IIGE 524

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R ++                  +KL  +A    IE  N H A  D  
Sbjct: 525 KVKNPYLDTLELCRKMF-------------PELGRYKLNIVAKHLKIELENHHRAVDDSM 571

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +      +  +               ++    +    + +       ++   +++ 
Sbjct: 572 ATAKIFIHCLNELKEKGCKNIKDIQNAFDGEVNLKASSYHAIILVKNKVGLKNLYKIVSQ 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNKC 300
                 YK   +   L  + R    L S   A  L+ +  +++ +  +   ++     + 
Sbjct: 632 SHLKYLYKKPRVPKKLLMEYREGLILGSACEAGELYRAILNNKSEDEISKIVRFYDYLEI 691

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             L    +           + K+  +   ++R     R    A  +  +     +V  ++
Sbjct: 692 QPLGNNQFLINNGKVSSQEELKKINK--KIIRLGERHRKPVVATCDVHFMDPRDEVFRRI 749

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                             T  +  + L    ++  L E    Y        +  +     
Sbjct: 750 LMSGRGF-----------TDADNQAPLYFRTTEEMLEEFS--YLGEEKAREVVIENTNLI 796

Query: 421 LEHRKKM------LTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
            +  + +          +IE  +  ++++    + E  G+E  E +   L + L  +I
Sbjct: 797 ADMIESIAPVLEGTFPPKIEGAEQDIENMAMNRAKEIYGEELPEVVAKRLEKELNSII 854


>gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum D str. 1873]
 gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum D str. 1873]
          Length = 1443

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/474 (13%), Positives = 142/474 (29%), Gaps = 44/474 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N FV++D ET G     D+  +   V++ +    I+S   F      +         +T 
Sbjct: 428 NTFVVFDLETTGFSSEYDKIIEIGAVKI-KNGNIIDSFSTF---VNPEIKIPYNITELTS 483

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++      + +F       ++  +N  FD  + R        D      
Sbjct: 484 ITNDDVKNADTIDN----VLPKFMEFCKDSVLVAHNANFDMSFIRKNCNDLSIDINYT-- 537

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D + + +                     +KL  +A   G+   N H A  D  
Sbjct: 538 -----VMDTVPLAK-------------FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAK 579

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241
           AT  ++    +    +     D  NK  L  +   +  T  + +        ++   LI+
Sbjct: 580 ATADILLCCFKLLDDMKITSLDSLNKEFLGNIDVKKLPTYHLIILAKNQVGLKNLYKLIS 639

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299
                  ++   +  +L    +    + S   A  ++ +    + +  +   IK     +
Sbjct: 640 YSNLDYFFRKPRMPKSLIEQYKEGLIIGSACEAGEVYKAVLEGKSQEELKEIIKFYDYLE 699

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              +M  ++  K+   +     K     +  L +  N                       
Sbjct: 700 IQPIMNNEFMLKKGIVKSEEQLKEVNRKIYNLGK-ENGLPIVATGDVHFLDPKDAKFREI 758

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           L  G             L+T  E L        D    E+         P  ++E+   +
Sbjct: 759 LMKGQGFSDAEDQPPLYLKTTNEMLKEFEYLGKDE-CKEVV---IY--NPQKIAEEI--E 810

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
            ++         +IE  +  +++++ E      G+   + + + L + L  +I 
Sbjct: 811 VIKPIPDETFPPKIEGAEEDIRNMTLEKAHSIYGNPLPKVVHDRLEKELNSIIN 864


>gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
 gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
          Length = 1452

 Score =  133 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 140/477 (29%), Gaps = 50/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 435 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 490

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           T                 + Q F   +   I+  +N  FD  +    + +          
Sbjct: 491 TDDMVKGSDP-----IDVVLQRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------ 539

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N+  D L++ R +Y                 + +L  L     I     H A  D  
Sbjct: 540 KAENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAE 586

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L W + +   ++ +  Y     + + +    +   P         A          
Sbjct: 587 ATAYLAWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLI 646

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y   V     S   ++ + L       +       ++  +    K         
Sbjct: 647 TMSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMLAAEKVAEFYDFIE 706

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P              D K   E L  + R          A  N  Y         ++Y
Sbjct: 707 IQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIY 762

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQ 418
                                +L  ++   +D  L E  F          +   +     
Sbjct: 763 RKILIHSQGGANPLNRA----ELPDVHFRSTDEMLKEFAF--LGEEKAKEVVVTNSNLVV 816

Query: 419 DWLEH---RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
           DW+E     K  L   +I+  +++++    +++ +  G++  E +   L + L+ +I
Sbjct: 817 DWMEELKPIKDELYTPKIDGAEDEVRNMSYNMAHQLYGEKLPEIVEARLEKELKSII 873


>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
 gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
          Length = 1433

 Score =  133 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 66/480 (13%), Positives = 147/480 (30%), Gaps = 55/480 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + FV++D ET G +   D+  +   V+V R  + ++    F              V +
Sbjct: 418 LEDDFVVFDIETTGLNPHQDKITEIGAVKV-RNGQIVDRFSAF---VNPGVSIPSFIVKL 473

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT         VE    + +++F       ++  +N  FD  + +             
Sbjct: 474 TGITDDMVKDAPPVE----QVLNEFMEFIQGSVLVAHNANFDVGFIKQNAKLMGE----- 524

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D L++ R ++                  +KL  +A    IE  N H A  D
Sbjct: 525 --KVKNPYIDTLELCRKMF-------------PELGRYKLNIVAKHLKIELENHHRAVDD 569

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +         +               ++    +    + +       ++   ++
Sbjct: 570 SMATAKIFMHCINILKEKGCKTIKDIQNAFDGEINLKASSYHAIILVKNKVGLKNLYKIV 629

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLN 298
           +       YK   +   L  + R    L S   A  L+ +  +++ +  +   ++     
Sbjct: 630 SQSHLKYFYKKPRVPKKLLMEYREGLILGSACEAGELYRAILNNKSEEEISKIVRFYDYL 689

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           +   L    +           + K+  +   ++R     R    A  +  +     +V  
Sbjct: 690 EIQPLGNNQFLINNGKVSSQEELKKINK--KIIRLGERHRKLVVATCDVHFMDPRDEVFR 747

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           ++                  T  +  + L L  +D  L E    Y        +  +   
Sbjct: 748 RILMAGRGF-----------TDADNQAPLYLRTTDEMLEEFS--YLGEEKAREVVIENTN 794

Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +  + +           IE  +  ++++    + E  G++  E +   L + L  +I
Sbjct: 795 LIADMIESIAPVLEGTYPPNIEGAEQDIENMAMTRAKEIYGEDLPEVVAQRLEKELNSII 854


>gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
 gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
          Length = 1367

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/471 (15%), Positives = 141/471 (29%), Gaps = 44/471 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D+ET G D  +D   +   V++ ++   I+                 ++  ITGI
Sbjct: 359 TFVVFDFETTGLDPQVDEIIEIGAVKI-KEGRIIDEYHTL---IKPSGTISRKSAEITGI 414

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +    +  +E E      +F       I+  +N  FD  + R    +     +   + 
Sbjct: 415 TQEMLEGERAIE-EVLPEFLEFLEDS---ILVAHNANFDYRFLRLWIKKVLGKDWEKPY- 469

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                               D +          S+ L  +    G+     H A  D   
Sbjct: 470 -------------------VDTLALAKSLLRLKSYSLDSVVKKLGLGSFRHHRALDDARV 510

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +     E   K+         K +       Q       +       ++   L++  
Sbjct: 511 TAQVFLRFIEMMKKIGITKLSEMEKLKDSVDFTAQKPYHCTILVQNRTGLKNLYRLVS-- 568

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKCPI 302
             + +Y  SV     S  +   + L           +   L+G     ++E+        
Sbjct: 569 DSYTKYFHSVPRILKSELIEKREGLIVGSACISGELARAALEGASDSELEEIAKFYDYIE 628

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +MP+D  +++         +   +   L R    L        +  +             
Sbjct: 629 IMPLDVIEEDEEVDRERLKEVYRK---LYRIAKRLNKPVVMTGDVHFLDPEDAKGRSALL 685

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
              +    +     LRT  E L      F D    E+       N P+ +   E  + ++
Sbjct: 686 APQSRNFERQPALYLRTTEEMLEKAMEIFEDE---EIAKEVVVEN-PNRI--AEMIEEVQ 739

Query: 423 HRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             +K L    IE     +++L    + E  GD   E +   + + L  +I 
Sbjct: 740 PLEKKLHPPVIENADEIVRNLTMERAHELYGDPLPEIVEKRIKKELDAIIN 790


>gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262]
 gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262]
 gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           innocua FSL S4-378]
          Length = 1444

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/477 (14%), Positives = 139/477 (29%), Gaps = 50/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           T                 + + F       I+  +N  FD  +    + +   +      
Sbjct: 483 TDDMVKGSDP-----IDVVLKQFREWSGDDILVAHNASFDMGFINTAYEKVGLE------ 531

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N+  D L++ R +Y                 + +L  L     I     H A  D  
Sbjct: 532 KAKNAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAE 578

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L W + +   ++ +  +     + + +    +   P                    
Sbjct: 579 ATAYLAWKLIKDAKEMHDIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLI 638

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y   V     S   ++ + L       +       ++  +    K         
Sbjct: 639 TMSNINYFYRVPRIPRSQLKKMREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIE 698

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P              D K   E L  + R          A  N  Y         ++Y
Sbjct: 699 VQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP----VDKIY 754

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQ 418
                                +L  ++   +D  L E  F          +   +     
Sbjct: 755 RKILIHSQGGANPLNRA----ELPDVHFRSTDEMLKEFAF--LGEEKAKEIVVTNSNLVV 808

Query: 419 DWLEH---RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
           DW++     K  L   +I+  ++++++    ++ +  G++  E +   L + L+ +I
Sbjct: 809 DWMDDLKPIKDELYTPKIDGAEDEVRNMSYGMAHQLYGEKLPEIVEARLEKELKSII 865


>gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
 gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
          Length = 1449

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 138/476 (28%), Gaps = 47/476 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            ++++D ET G     D   + A VR+  +     S + F       +      V +TGI
Sbjct: 422 TYIVFDVETTGLSAVYDTIIELAAVRM-HKGNVEASFDEF---IDPGHPLSRTTVELTGI 477

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + +           
Sbjct: 478 TDEMVRGS-KSEEEVLRLFREF---SEGAILVAHNASFDMGFLNTSYRKYGIPEAEN--- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 531 ---PVIDTLELARYLY-------------PEFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 574

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAP 242
           T  L W+  ++  +  E L        +      +   P    +     A   N   +  
Sbjct: 575 TGHLAWIFVKEAMEKHEMLLHEELNRHVGGENSYKAARPFHATILARTQAGLKNLFKLIS 634

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           ++    + D V     S  +++ + L       +       ++  V    +         
Sbjct: 635 MSNVKYFHDKVPRIPRSELVKLREGLLVGTACDKGEVFVAMMQKGVDAARELAKFYDYIE 694

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +MP                K   + +  L +      +        +  + +D    +Y 
Sbjct: 695 VMPKAVYAHLLETELVKSEKDLEDIIRNLVKMGEELGKIVVATGNAHYLNEEDA---IYR 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
               +           + P+    ++   +D  L    F++        +      K   
Sbjct: 752 KVLINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFQFLGPEAAKEIVVTNPNKIAD 805

Query: 419 DWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   +I   + ++  L    + E  GD   E +   L + L  +I
Sbjct: 806 LCEKVIPVKDDLYTPKIPGSEQEITDLSYNRAKELYGDPLPEIVEKRLKKELDSII 861


>gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL N1-067]
          Length = 1452

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/477 (14%), Positives = 139/477 (29%), Gaps = 50/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 435 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 490

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           T                 + + F   +   I+  +N  FD  +    + +          
Sbjct: 491 TDDMVKGSDP-----IDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------ 539

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N+  D L++ R +Y                 + +L  L     I     H A  D  
Sbjct: 540 KAENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAE 586

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L W + +   ++ +  Y     + + +    +   P         A          
Sbjct: 587 ATAYLGWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLI 646

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y   V     S   ++ + L       +       ++  +    K         
Sbjct: 647 TMSNINYFYRVPRIPRSQLNKLREGLIIGTACSQGELFEAMMQKGMQAAEKVADFYDFIE 706

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P              D K   E L  + R          A  N  Y         ++Y
Sbjct: 707 IQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDP----VDKIY 762

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQ 418
                                +L  ++   +D  L E  F          +   +     
Sbjct: 763 RKILIHSQGGANPLNRA----ELPDVHFRSTDEMLKEFAF--LGEEKAKEVVVTNSNLVV 816

Query: 419 DWLEH---RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
           DW+E     K  L   +I+  ++++++    ++ +  G+   E +   L + L+ +I
Sbjct: 817 DWIEDLKPIKDELYTPKIDGAEDEVRNMSYSMAHQLYGETLPEIVEARLEKELKSII 873


>gi|213609520|ref|ZP_03369346.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 187

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/187 (43%), Positives = 123/187 (65%), Gaps = 1/187 (0%)

Query: 261 DMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGID 320
           D+    +LDS  L +RL+T+  +L     VP+K VH+NKCP+L   +  + E  +R GI+
Sbjct: 1   DISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQANTLRPEDADRLGIN 60

Query: 321 HKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQIMDRILRT 379
            + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QLYDGFF+D DR  M  +L T
Sbjct: 61  RQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQLYDGFFSDADRAAMKIVLET 120

Query: 380 APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNK 439
            P  L  L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+++LT   +++Y N+
Sbjct: 121 EPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQYANE 180

Query: 440 LQSLSGE 446
           LQ LS +
Sbjct: 181 LQMLSQQ 187


>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
 gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1435

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 141/479 (29%), Gaps = 53/479 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     +   + A V+V +  E I+    F       +      + +TG
Sbjct: 418 DTYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFTSFA---NPHHPLSITTIELTG 473

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         VE E  R+ + +       I+  +N  FD  +    F +          
Sbjct: 474 ITDDMLKDAPDVE-EVLRQFYDWM---GDSILVAHNASFDIGFLNVGFTKLGLG------ 523

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 524 KVTNPVIDTLELARFLY-------------PELKNHRLNTLCKKFDIELTQHHRAIYDAE 570

Query: 183 ATLALVWLIREKKPK---LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           AT  L+  + +   +   L+    + R+K ++      Q   P                 
Sbjct: 571 ATGYLLMRLLKDAQERGILYHDELNERSKEEV----SYQRSRPFHVTLLAQNDIGLKNLF 626

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
                 H +Y   V     S   +  + +       +     + ++       +      
Sbjct: 627 KLVSLSHVKYFYRVPRIPRSVLQQHREGILVGSGCDKGEVFDNMIQKAPEEVEEIAKFYD 686

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              + P +  K      +  D     E   ++R+   L ++              + + +
Sbjct: 687 FLEVHPPEVYKPLIEMDYVKDENMIKE---IIRKIVMLGEKLNIPVVATGNVHYLNPEDK 743

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +Y                     +L  +    +D  L    F          +     Q 
Sbjct: 744 IYRKILIHSQGGANPLNRY----ELPDVYFRTTDEMLKCFSF--LGEEKAKEIVVMNTQK 797

Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
             +        K  L   RIE  + +++ +    + E  GD   E +   L + L+ +I
Sbjct: 798 IADLIGEVKPIKDKLYTPRIEGAEEEIREMSYRRAKEIYGDPLPEIVEQRLEKELKSII 856


>gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
 gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
          Length = 1449

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 138/476 (28%), Gaps = 47/476 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            ++++D ET G     D   + A VR+  +     S + F       +      V +TGI
Sbjct: 422 TYIVFDVETTGLSAVYDTIIELAAVRM-HKGNVEASFDEF---IDPGHPLSRTTVELTGI 477

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + +           
Sbjct: 478 TDEMVRGS-KSEEEVLRLFREF---SEGAILVAHNASFDMGFLNTSYRKYGIPEAEN--- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 531 ---PVIDTLELARYLY-------------PEFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 574

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAP 242
           T  L W+  ++  +  E L        +      +   P    +     A   N   +  
Sbjct: 575 TGHLAWIFVKEAMEKHEMLLHEELNRHVGGENSYKAARPFHATILARTQAGLKNLFKLIS 634

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           ++    + D V     S  +++ + L       +       ++  V    +         
Sbjct: 635 MSNVKYFHDKVPRIPRSELVKLREGLLVGTACDKGEVFVAMMQKGVDAARELAKFYDYIE 694

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +MP                K   + +  L +      +        +  + +D    +Y 
Sbjct: 695 VMPKAVYAHLLEMELVKSEKDLEDIIRNLVKMGEELGKIVVATGNAHYLNEEDA---IYR 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
               +           + P+    ++   +D  L    F++        +      K   
Sbjct: 752 KVLINSMGGANPLNRHSLPD----VHFRTTDEMLT--AFQFLGPEAAKEIVVTNPNKIAD 805

Query: 419 DWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +    K  L   +I   + ++  L    + E  GD   E +   L + L  +I
Sbjct: 806 LCEKVIPVKDDLYTPKIPGSEQEITDLSYNRAKELYGDPLPEIVEKRLKKELDSII 861


>gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42]
 gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42]
          Length = 1437

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/475 (14%), Positives = 139/475 (29%), Gaps = 44/475 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D   + A V++ R  E I+  E F       +      + +TG
Sbjct: 419 DTYVVFDVETTGLSAVYDTIIELAAVKI-RGGEIIDKFEAFA---NPHHPLSATTIELTG 474

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            +    +  F       ++  +N  FD  +    + R        + 
Sbjct: 475 ITDDMVRDAP----DVVDVVRDFKEWIGDDVLVAHNASFDMGFLNVAYKRLL-----KTE 525

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 526 KAKNPVIDTLELARFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAVFDAE 572

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +      +  Y  +    + +    Q   P          +         
Sbjct: 573 ATGYLLLKMLK-DAAEKDIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLV 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H +Y   V     S   +  + L       R       ++                 
Sbjct: 632 SISHIQYFYRVPRIPRSQLNKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P +  +         D K   E   ++   T L ++              + + ++Y 
Sbjct: 692 VQPPEVYRHLLQLELVRDEKALKE---IIANITKLGEKLNKPVVATGNVHYLNDEDKIYR 748

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ---- 418
                               +L  ++   +D  L    F   A      + +  ++    
Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLEAFSF-LGAEKAKEIVVDNTQKVASM 803

Query: 419 -DWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
            D ++  K  L   +I+    +++ +S +      G+E  E +   + + L+ +I
Sbjct: 804 IDEIKPIKDDLYTPKIDGADEEIREMSYQRARSIYGEELPEIVEARIEKELKSII 858


>gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1]
 gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type
           [Lactobacillus plantarum WCFS1]
 gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 1437

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/475 (12%), Positives = 128/475 (26%), Gaps = 47/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     DR  + + V++  +   ++  E F       +        +T I
Sbjct: 421 TYVIFDTETTGLSAIYDRVIELSAVKM-VKGNVVDQFEEF---IDPGFHLSETTTNLTSI 476

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E  +   +F       I+  +N+ FD  +    + R+          
Sbjct: 477 TDDMVRGS-KSEEEVFKLFREF---YGDAIVVGHNVTFDIGFMNTGYARHHMGPI----- 527

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L + R +Y                  ++L  LA    +   + H A  D   
Sbjct: 528 -TNPIIDTLTLARWLY-------------PNLRGYRLNTLAKKFNVNLEHHHRAIYDAET 573

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L  L  +     ++  +  +  + + +    ++  P          +          
Sbjct: 574 TGHLNHLFLKDAEDRYQVQFHDQLNDHMNENAAYRHARPFHATLYAQTQAGLKNLFRIIS 633

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   +    +               ++       ++        +
Sbjct: 634 LSNVEYYYRVPRVPRSVLNKYRDGILVGSACSSGEVFTAMMQKGKEEARQKAGYYDFLEV 693

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P              D      +L  +            I                   
Sbjct: 694 QPKPAYSALIESGLIADTD----HLEEIISNMVELGHEMNIPVAATGDVHYLNPEDKIYR 749

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSEKEK 417
                 +            +   ++   +D  L +  F           + P  L   ++
Sbjct: 750 KILIHSQPGNPLNRT----ERPDVHFRSTDEMLKDFDFLGTETAHEVVVDTPRAL--ADQ 803

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
            + +   K  L   R++  + +++ L+ +      G+   E +   + + L+ +I
Sbjct: 804 FEIVRPVKDKLYTPRMKGAEAEIEKLTMDRAHAWYGNPLPEIVQKRVDKELKSII 858


>gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL S4-171]
          Length = 1444

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/477 (14%), Positives = 139/477 (29%), Gaps = 50/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           T                 + + F   +   I+  +N  FD  +    + +          
Sbjct: 483 TDDMVKGSDP-----IDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------ 531

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N+  D L++ R +Y                 + +L  L     I     H A  D  
Sbjct: 532 KAENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAE 578

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L W + +   ++ +  Y     + + +    +   P         A          
Sbjct: 579 ATAYLGWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLI 638

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y   V     S   ++ + L       +       ++  +    K         
Sbjct: 639 TMSNINYFYRVPRIPRSQLNKLREGLIIGTACSQGELFEAMMQKGMQAAEKVADFYDFIE 698

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P              D K   E L  + R          A  N  Y         ++Y
Sbjct: 699 IQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDP----VDKIY 754

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQ 418
                                +L  ++   +D  L E  F          +   +     
Sbjct: 755 RKILIYSQGGANPLNRA----ELPDVHFRSTDEMLKEFAF--LGEEKAKEVVVTNSNLVV 808

Query: 419 DWLEH---RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
           DW+E     K  L   +I+  ++++++    ++ +  G+   E +   L + L+ +I
Sbjct: 809 DWIEDLKPIKDELYTPKIDGAEDEVRNMSYSMAHQLYGETLPEIVEARLEKELKSII 865


>gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM
           7]
 gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208]
 gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1437

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/475 (14%), Positives = 139/475 (29%), Gaps = 44/475 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D   + A V++ R  E I+  E F       +      + +TG
Sbjct: 419 DTYVVFDVETTGLSAVYDTIIELAAVKI-RGGEIIDKFEAFA---NPHHPLSATTIELTG 474

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            +    +  F       ++  +N  FD  +    + R        + 
Sbjct: 475 ITDDMVRDAP----DVVDVVRDFKEWIGDDVLVAHNASFDMGFLNVAYKRLL-----KTE 525

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 526 KAKNPVIDTLELARFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAVFDAE 572

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +      +  Y  +    + +    Q   P          +         
Sbjct: 573 ATGYLLLKMLK-DAAEKDIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLV 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H +Y   V     S   +  + L       R       ++                 
Sbjct: 632 SISHIQYFYRVPRIPRSQLDKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P +  +         D K   E   ++   T L ++              + + ++Y 
Sbjct: 692 VQPPEVYRHLLQLELVRDEKALKE---IITNITKLGEKLNKPVVATGNVHYLNDEDKIYR 748

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ---- 418
                               +L  ++   +D  L    F   A      + E  ++    
Sbjct: 749 KILVSSQGGANPLNRH----ELPKVHFRTTDEMLDAFSF-LGAEKAKEIVVENTQKVASM 803

Query: 419 -DWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
            + ++  K  L   +I+    +++ +S +      G+E  E +   + + L+ +I
Sbjct: 804 IEEIKPIKDDLYTPKIDGADEEIREMSYQRARSIYGEELPEIVEARIEKELKSII 858


>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
 gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium
           thermocellum ATCC 27405]
          Length = 1442

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 145/477 (30%), Gaps = 56/477 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G     D+  +   V++ ++ + +++   F      +       V +TGIT
Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKI-KEGKIVDTFSTF---VNPEIPIPEFVVKLTGIT 484

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    ++    + + +F     T  +  +N  FD  + R+            + + 
Sbjct: 485 DDMVSDAPTID----KVLPEFLEFVGTSPLVAHNAVFDTGFIRHNAR-------LINRNV 533

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                   KL  +A   G+   N H A  D  A 
Sbjct: 534 DNPVIDTLELSRQMF-------------PELKKHKLDVVAKHLGVSLENHHRALDDAKAC 580

Query: 185 LALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             +     E   +      D                +   ++ V   +   R+   +++ 
Sbjct: 581 GEIFIKCLEILAEKNVKTIDDIQNVFEGCWNYQKANSYHAIILVKN-YVGLRNLYKIVSK 639

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K   +   L    R    L S   A  L+ +  E K    +  + V       
Sbjct: 640 THLEYFHKRPRLPRKLLMMHREGLILGSACEAGELYRAILENKDEDEIS-RIVKFYDYLE 698

Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P+   +           +     N  ++           A  +  +     +V  ++ 
Sbjct: 699 IQPLGNNRFLVESGKVNSEEDLKNINRKIVALGEKYNKPVVATCDVHFMDPQDEVFRRIL 758

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            +  +  + L    +D  L E  F Y  R   + +         
Sbjct: 759 MAGQGF-----------SDADNQAPLYFRTTDEMLEE--FEYLGREKCYEVVVTNTNLIA 805

Query: 422 EHRKKML------TRSRIEEYKNKLQSLSG----EYKGDEGKEGLINALYEYLQWVI 468
           +  + +L         +IE  + +++ L+     E  GD   E +   + + L  +I
Sbjct: 806 DMCEDILPIPEGTFPPKIEGAEEEIRMLAENKAREIYGDPLPEIVEKRMEKELNSII 862


>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           2360]
 gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           2360]
 gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           1313]
          Length = 1442

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 145/477 (30%), Gaps = 56/477 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G     D+  +   V++ ++ + +++   F      +       V +TGIT
Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKI-KEGKIVDTFSTF---VNPEIPIPEFVVKLTGIT 484

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    ++    + + +F     T  +  +N  FD  + R+            + + 
Sbjct: 485 DDMVSDAPTID----KVLPEFLEFVGTSPLVAHNAVFDTGFIRHNAR-------LINRNV 533

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                   KL  +A   G+   N H A  D  A 
Sbjct: 534 DNPVIDTLELSRQMF-------------PELKKHKLDVVAKHLGVSLENHHRALDDAKAC 580

Query: 185 LALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             +     E   +      D                +   ++ V   +   R+   +++ 
Sbjct: 581 GEIFIKCLEILAEKNVKTIDDIQNVFEGCWNYQKANSYHAIILVKN-YVGLRNLYKIVSK 639

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K   +   L    R    L S   A  L+ +  E K    +  + V       
Sbjct: 640 THLEYFHKRPRLPRKLLMMHREGLILGSACEAGELYRAILENKDEDEIS-RIVKFYDYLE 698

Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P+   +           +     N  ++           A  +  +     +V  ++ 
Sbjct: 699 IQPLGNNRFLVESGKVNSEEDLKNINRKIVALGEKYNKPVVATCDVHFMDPQDEVFRRIL 758

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            +  +  + L    +D  L E  F Y  R   + +         
Sbjct: 759 MAGQGF-----------SDADNQAPLYFRTTDEMLEE--FEYLGREKCYEVVVTNTNLIA 805

Query: 422 EHRKKML------TRSRIEEYKNKLQSLSG----EYKGDEGKEGLINALYEYLQWVI 468
           +  + +L         +IE  + +++ L+     E  GD   E +   + + L  +I
Sbjct: 806 DMCEDILPIPEGTFPPKIEGAEEEIRMLAENKAREIYGDPLPEIVEKRMEKELNSII 862


>gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 1444

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      + +F       I+  +N  FD  +    + +   +       
Sbjct: 483 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------K 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L++ R +Y                 + +L  L     I     H A  D  A
Sbjct: 533 ADNAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEA 579

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W + +   ++ +  +     + + +    +   P                     
Sbjct: 580 TAYLAWKLIKDAKEMHDINFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLIT 639

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     S   ++ + L       +       ++  +    K V       +
Sbjct: 640 MSNINYFYRVPRIPRSQLKKLREGLIVGTACSQGELFEAMMQKGMQAAEKVVEFYDFIEI 699

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D K   E L  + R          A  N  Y         ++Y 
Sbjct: 700 QPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDP----VDKIYR 755

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                               +L  ++   +D  L E  F          +   +     D
Sbjct: 756 KILIHSQGGANPLNRA----ELPDVHFRSTDEMLKEFAF--LGEEKAKEVVVTNSNLVVD 809

Query: 420 WLEH---RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
           W+E     K  L   +I+  ++++++    ++ +  G+   E +   L + L+ +I
Sbjct: 810 WMEELKPIKDELYTPKIDGAEDEVRNMSYDMAHQLYGENLPEIVEARLEKELKSII 865


>gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745]
 gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus
           pentosaceus ATCC 25745]
          Length = 1437

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/480 (13%), Positives = 151/480 (31%), Gaps = 55/480 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D+  + + V++      I+  E F       +      + +T I
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKM-ENGNVIDQFEEF---IDPGFPLSETTINLTSI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      + E E   +  +F+      II  +N+ FD  +    + R+  +       
Sbjct: 475 TDEMVRGS-MSEKEVFTKFREFYED---AIIVGHNVTFDIGFMNTGYLRHGMEEI----- 525

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L + R +Y                  ++L  LA   G+   + H A  D   
Sbjct: 526 -KNPIIDTLTLARFLY-------------PTLKGYRLNTLAKKFGVALEHHHRAIYDSET 571

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L +L  +   + +   Y  +  + + +    ++  P   +      +          
Sbjct: 572 TGHLCYLFLKDAEERYGIEYHDQLNDHMTENEAYKHARPSHAILIAKTQAGLKNLFKLVS 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y   V     S   ++ + +               ++       ++        +
Sbjct: 632 MSNVKYYYRVPRIPRSELEKLREGIIVGSACSSGDVFTAMMQKGYADARRKAKFYDYLEV 691

Query: 304 MPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D+K+  E    +++   +L     A  +  Y +    +  ++  
Sbjct: 692 MPKPVYQPLIEQELVSDNKKLEEIIANIVKLGEDLDIPVVATGDVHYLNPQDYIYRKILI 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF-------RYRARNFPHTLSEK 415
                 +             +L  ++   +D  L +  F       +    N     S K
Sbjct: 752 NSQGGANPLNRS--------ELPDVHFRTTDEMLEDFSFLGPEVAHKIVVEN-----SNK 798

Query: 416 EKQDWLEHR---KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                 +     K  L   ++   +++++ LS +      G+   E +   L + L  +I
Sbjct: 799 IADSVDDGISPVKDKLYTPKMPGAEDRIKQLSMDRAHALYGEVLPEIVQERLDKELTSII 858


>gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 1444

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/477 (14%), Positives = 139/477 (29%), Gaps = 50/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           T                 + + F   +   I+  +N  FD  +    + +          
Sbjct: 483 TDDMVKGSDP-----IDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------ 531

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N+  D L++ R +Y                 + +L  L     I     H A  D  
Sbjct: 532 KAENAVVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAE 578

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L W + +   ++ +  Y     + + +    +   P         A          
Sbjct: 579 ATAYLGWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLI 638

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y   V     S   ++ + L       +       ++  +    K         
Sbjct: 639 TMSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVADFYDFIE 698

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P              D K   E L  + R          A  N  Y         ++Y
Sbjct: 699 IQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDP----VDKIY 754

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQ 418
                                +L  ++   +D  L E  F          +   +     
Sbjct: 755 RKILIHSQGGANPLNRA----ELPDVHFRSTDEMLKEFAF--LGEEKAKEVVVTNSNLVV 808

Query: 419 DWLEH---RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
           DW+E     K  L   +I+  ++++++    ++ +  G+   E +   L + L+ +I
Sbjct: 809 DWIEDLKPIKDELYTPKIDGAEDEVRNMSYSMAHQLYGETLPEIVEARLEKELKSII 865


>gi|330860011|emb|CBX70338.1| hypothetical protein YEW_LE47370 [Yersinia enterocolitica W22703]
          Length = 120

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/114 (69%), Positives = 88/114 (77%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I+DYETFG+  ALDRPAQFAGVR D  +  IE   V +C PADDYLP PEAV IT
Sbjct: 7   QPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD  SRNIFYRNF 
Sbjct: 67  GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFL 120


>gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
 gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
          Length = 1444

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/447 (12%), Positives = 119/447 (26%), Gaps = 43/447 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +VI+D ET G     D+  + + V++ +  E +   + F       +    +   +T 
Sbjct: 421 NTYVIFDVETTGLSAIYDKVIELSAVKM-KNGEVLARFDEF---IDPGFPLSEQTTNLTS 476

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +        E E  +    F       II  +N+ FD  +    + R+  +      
Sbjct: 477 ITDEMVRGS-KSEEEVFKMFKDF---CAGTIIAGHNVSFDMGFMNTGYRRHQMEEI---- 528

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + R +Y                  ++L  L+    +   + H A  D  
Sbjct: 529 --TEPVIDTLPLARFLY-------------PNMRGYRLNTLSKKFKVALEHHHRANFDAE 573

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L++   +   K +E  Y       + +    ++  P          +         
Sbjct: 574 ATGHLLYKFLKDAEKRYEIRYVDELNQHMAENDAYKHARPFHVTLLAQNQAGLKNLFKLV 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              + RY   V     +   +  + L               ++      ++         
Sbjct: 634 SLSNVRYFHRVPRIPRTVLTKYREGLLLGTACSSGEVFTAMMEKGYAEALRRARYYDYIE 693

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P              D  +      +L+    L    K            +    +Y 
Sbjct: 694 IQPRPNYAPLLETHVIADRDQLD---DILQNMVKLGAELKKKVVATGDVHYINPHDGIYR 750

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEK 415
               +               +   ++   +D  L E          R    N        
Sbjct: 751 RILINSQGGANPLNRT----KRPDVHFRTTDEMLEEFSFLGADTAKRVVVENSHAI--AD 804

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQS 442
                +   K  L    ++  + ++Q 
Sbjct: 805 MIDADIRPVKDKLYTPHMKGAEQEIQD 831


>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 1440

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/476 (15%), Positives = 143/476 (30%), Gaps = 54/476 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G +   D   + A V+V +  + +++          +   DP+ V +TGIT
Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKV-KAGQIVDTYATL---IDPERALDPKIVELTGIT 482

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E      QF       ++  +N  FD  +      R   D +      
Sbjct: 483 NEMVAGQPK-LKEALDGFRQF---ARGAVLVAHNAEFDVGFLNQCAERLGLDPWE----- 533

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R +Y              G  ++KL+ L     ++ VN H A AD  AT
Sbjct: 534 -EPVIDTLALARVLY-------------PGEKNYKLKTLTQKFSVDLVNHHRALADSEAT 579

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +   + +       +     N   LR  IDI  + P      +               
Sbjct: 580 AKVFVHMLKDAKARGIHNLLDMN--HLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSI 637

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPIL 303
            H +Y   V     S   R  + L      ++        +G     I   +       +
Sbjct: 638 AHTQYLHRVPRIPKSALARHREGLLIGTACRQGELVEAFFRGKSEDEIDTLLEFYDYLEI 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P+ + +    E      ++  E L  +       ++        +     D   +    
Sbjct: 698 QPVSHYEPLVREGVVASFEQVRELLRNIVDIGKRLNKPVVATGDVHYLDEHDAIFREIFL 757

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
               VD +               L+   +D  L E  F          +     +  +  
Sbjct: 758 QSQKVDTKQPP------------LHFRTTDEMLEEFAF--LGEEDARAVVIDNPRRLVAL 803

Query: 424 RK------KMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
            +        L    I+  +++++ L+ +      GD   E +   L   L  +I 
Sbjct: 804 CEDVKPIPDELHTPVIDGAEDEIRRLAYDKAKRIYGDPLPEIVEKRLERELNAIIS 859


>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1433

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/478 (15%), Positives = 140/478 (29%), Gaps = 46/478 (9%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + +V++D ET G     +   + A V+V +  E I+  E F           P  + +
Sbjct: 415 MEDTYVVFDVETTGLSAVYNTIIELAAVKV-QGGEIIDRFESFA---NPHEPLSPTIIDL 470

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT         +       +  F +     I+  +N  FD  +    + +   D    
Sbjct: 471 TGITDDMVADAPEIH----DVLKDFKAWCGNDILVAHNAAFDMAFLDAGYQKAGMD---- 522

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D L++ R +Y                 +++L  L     IE V+ H A  D
Sbjct: 523 --KAANPVIDTLEMGRMLYPTF-------------KNYRLNTLCKKFNIELVSHHRAIYD 567

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  L+W +     +     +   N        D +   P         A        
Sbjct: 568 AEATGHLLWKMVRDAVEKGITTHSALN--DQSSPDDYKKQRPNHCTIYAKNAEGLKNLYK 625

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
                H  Y   V     S  +   + L       +       ++               
Sbjct: 626 LVSKAHIDYFFRVPRLPKSVLVEHREGLLIGSACDQGEVFDGLMQKAPEEVESTAAFYDF 685

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             +MP    +    +    D       +  L++    +     A  N  Y +    V  +
Sbjct: 686 LEVMPPSNYQHLIEKEIIRDELELKSVIKNLIKLGETVNKPVVATGNVHYLNEEDHVYRK 745

Query: 360 L---YDGFFADVDRQIMDRIL-RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           +     G    ++R  + ++  RT  E L   +    ++R           N        
Sbjct: 746 ILIASQGGANPLNRITLPKVHFRTTNEMLDCFSFLSEEKR-----QEIVVTNSRKI--AD 798

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
           E  +  +     L    IE    +++ +    +    GD   E +   L + L  +I 
Sbjct: 799 EIDEI-KPIPDDLYTPHIEGADEEMRQMCYDRAKSIYGDPLPELVEKRLEKELTSIIS 855


>gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
 gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
          Length = 1436

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/475 (13%), Positives = 139/475 (29%), Gaps = 46/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D+  + + V++      I+  E F       +      + +T I
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKM-ENGNVIDEFEEF---IDPGFPLSETTINLTSI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      + E E   +  +F+      II  +N+ FD  +    + R+  +       
Sbjct: 475 TNEMVRGS-LSEKEVFTKFREFYED---AIIVGHNVTFDIGFMNTGYLRHGMEEI----- 525

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L + R +Y                  ++L  LA    +   + H A  D   
Sbjct: 526 -KNPIIDTLTLARFLY-------------PTLKGYRLNTLAKKFNVALEHHHRAIYDAET 571

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L +L  +   + +   Y  +  + + +    ++  P   V      +          
Sbjct: 572 TGHLCYLFLKDAEERYGIEYHDQLNDHMTENDAYKHARPNHAVLIAKTQAGLKNLFKLVS 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y   V     S   R+ + +                +                 +
Sbjct: 632 LSNVKYFYRVPRIPRSELERLREGIIVGSACSSGEVFTAMAQKGYVEARDRAKFYDYLEV 691

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP    +    +    D  +  E   ++     L                 +    +Y  
Sbjct: 692 MPKPVYQPLIDQEIVSDTNKLEE---IIGNIVKLGKDLDIPVVATGDVHYLNPQDAIYRK 748

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +               +L  ++   +D  L    FR+      H +  +      + 
Sbjct: 749 ILINSQGGANPLNRT----ELPDVHFRTTDEMLE--AFRFLGEETAHQIVVENPNQIADS 802

Query: 424 R------KKMLTRSRIEEYKNKLQSLSGE----YKGDEGKEGLINALYEYLQWVI 468
                  K  L   ++   +++++ L+ +      G E  E +   L + L  +I
Sbjct: 803 IDDISPVKDKLYTPKMPGAEDRIKQLAMDQAHALYGKELPEIVSERLDKELTSII 857


>gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
 gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
          Length = 1436

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/475 (13%), Positives = 139/475 (29%), Gaps = 46/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D+  + + V++      I+  E F       +      + +T I
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKM-ENGNVIDEFEEF---IDPGFPLSETTINLTSI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      + E E   +  +F+      II  +N+ FD  +    + R+  +       
Sbjct: 475 TNEMVRGS-LSEKEVFTKFREFYED---AIIVGHNVTFDIGFMNTGYLRHGMEEI----- 525

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L + R +Y                  ++L  LA    +   + H A  D   
Sbjct: 526 -KNPIIDTLTLARFLY-------------PTLKGYRLNTLAKKFNVALEHHHRAIYDAET 571

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L +L  +   + +   Y  +  + + +    ++  P   V      +          
Sbjct: 572 TGHLCYLFLKDAEERYGIEYHDQLNDHMTENDAYKHARPNHAVLIAKTQAGLKNLFKLVS 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y   V     S   R+ + +                +                 +
Sbjct: 632 LSNVKYFYRVPRIPRSELERLREGIIVGSACSSGEVFTAMAQKGYVEARDRAKFYDYLEV 691

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP    +    +    D  +  E   ++     L                 +    +Y  
Sbjct: 692 MPKPVYQPLIDQEIVSDTNKLEE---IIGNIVKLGKDLDIPVVATGDVHYLNPQDAIYRK 748

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +               +L  ++   +D  L    FR+      H +  +      + 
Sbjct: 749 ILINSQGGANPLNRT----ELPDVHFRTTDEMLE--AFRFLGEETAHQIVVENPNQIADS 802

Query: 424 R------KKMLTRSRIEEYKNKLQSLSGE----YKGDEGKEGLINALYEYLQWVI 468
                  K  L   ++   +++++ L+ +      G E  E +   L + L  +I
Sbjct: 803 IDDISPVKDKLYTPKMPGAEDRIKQLAMDQAHALYGKELPEIVSERLDKELTSII 857


>gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
 gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
          Length = 1441

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/476 (13%), Positives = 137/476 (28%), Gaps = 51/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   I+  E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAIYDSIIELAAVKM-HKGNVIDKFEEF---IDPGHPLSATTIQLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          +A+  +    F       I+  +N  FD  +    + +   +       
Sbjct: 481 TDDMVRGS-KSQAQVLKEFAAFTKD---TILVAHNASFDMGFLNTGYEKEGLE------K 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R ++                 S +L  LA    +     H A  D   
Sbjct: 531 TTQPVIDTLELSRLLH-------------PHLKSHRLNTLAKRYNVALEQHHRAVFDSET 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L  +  ++       +Y  +    L      +N  P          +          
Sbjct: 578 TGHLCHIFLKEAANDHGLIYHDQLNTNLHPEEVFKNGRPFHATIFAKHQAGLKELFKVVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A + +Y   V     S  +                     ++       ++        +
Sbjct: 638 ASNVQYFYRVPRILRSMLIENRDSFLIGSGCSEGEVFEAMMQKGYEEAKEKAKFYDYIEI 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    +     E +  L +    L     A  N  Y +    +  ++  
Sbjct: 698 MPKAVYRPLIDKELIRNEHHLEEIIKNLVKLGEELDIPVVATGNVHYLNPEDKIYREILL 757

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFP------HTLSEKE 416
               +  +     +               ++  L E  F              +T    +
Sbjct: 758 TSVNNGQKLNYPDVH-----------FRTTNEMLDEFAF--LGEEKAFEVVVTNTHWVND 804

Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           + + +   K  L   +IE  ++++  L    + E+ G+E  E +   + + L+ +I
Sbjct: 805 QLEVIIPIKDDLYTPKIEGAEDEITKLSYDKAHEWYGEELPEIVEKRIDKELKSII 860


>gi|240142208|ref|YP_002966718.1| putative Exodeoxyribonuclease I [Methylobacterium extorquens AM1]
 gi|240012152|gb|ACS43377.1| putative Exodeoxyribonuclease I [Methylobacterium extorquens AM1]
          Length = 491

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 82/411 (19%), Positives = 137/411 (33%), Gaps = 26/411 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V +D ET   DV   +   FA V  +     +  +  V   + +   +P   A+    + 
Sbjct: 10  VCWDTETSDTDVRHGQIFDFAAVTSNLTDLVETGTRTVRIRRLS-YCIPAYGALSTNRLD 68

Query: 65  PQKALRDGVV-EAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           P          E   +  IH   S        ++GYN + FD+   R  F+RN  D Y  
Sbjct: 69  PYALEATDRTDEFSAAASIHGILSPKPGRPLVVLGYNILSFDEEIVRTTFFRNLLDPYAT 128

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           S   G  R+DLL   R  +A  PD       DDG  SF+L+ +A ANGI    AHDA  D
Sbjct: 129 SAK-GVRRFDLLPAARLAHALDPDAFPAGQDDDGGPSFRLERIAPANGIGL-RAHDALED 186

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             ATLAL   +R   P  +E      ++ +  ++ D          +          A +
Sbjct: 187 ARATLALARRLRSSVPAAWETCLRASDRYEAERVFDAAAAR-----NEPVWVLAGGNAPV 241

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
              A+       ++    S  +     + +  L         +L             N+ 
Sbjct: 242 LEPAYPVGKNGRLLVLARSSRLAESMQIGADAL---------DLDDWRDGSFIRCRTNRM 292

Query: 301 PILMPIDYCKKEHFER---WGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           P+++               + +             +         A  +     +    +
Sbjct: 293 PVVLSAAAAAVLSELHPGAFPVPPGDVRAPGAGWSEFKGALASRVADADPWTKPTGPTAE 352

Query: 358 SQLYDGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARN 407
            ++YDGF    ++  M         E+ +     F D R+ E   R    +
Sbjct: 353 ERIYDGFVDWGEKDRMRHFRYLGTWEERAAAFAGFRDSRIREFAARAIVEH 403


>gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
 gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
          Length = 1397

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 72/475 (15%), Positives = 141/475 (29%), Gaps = 51/475 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G +   +   +   V+V +  + I+    F            +   +TGI
Sbjct: 384 TFVVFDLETTGLNKFKNEIIEIGAVKV-KSGKVIDEFSSF---VKPGESIPNKITELTGI 439

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +   R   +E      I  F    +  I+  +N  FD  + +    +           
Sbjct: 440 TNEMVSRAPDIE----GVIGDFLEFIDGSILVAHNADFDYGFLQVALKKTGQ-------- 487

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G+  + +LD +    A  PD           ++ KL  LA    +   N H A  D  A
Sbjct: 488 -GDISYPVLDTLTLSRALLPDL----------SNHKLNTLARHLNVRLDNHHRAVEDARA 536

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +                   N+   +           V  +      +    L++  
Sbjct: 537 TSEIFINFLSNIKNEGIETVPGINRLSTKINWRELPTYHTVIFAKNKQGLKDIYRLVSES 596

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y+   I  +     R    + S   A +L+             IK         +
Sbjct: 597 HLNYFYRKPRILKSHLIQCRKNLIIGSACEAGQLY-RSIINNKPYREIIKIASFYDYLEI 655

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P    K     +     +    N  + +    L     A  +  +     D+  ++   
Sbjct: 656 QPTGNNKFLVGNKVESIDELEKINYQIYKLGKKLNKPVVATCDVHFLDPEDDIYRKVLQA 715

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL------FFRYRARNFPHTLSEKEK 417
                             E+ + L    ++  L E         R      P  +S++ +
Sbjct: 716 GQGYD-----------EAEEQAPLYFRTTNEMLEEFSYLGKKAAREVVIENPAKISDQIE 764

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  L+     L    IE   ++++ +    + E  GD     +   L + L+ +I
Sbjct: 765 E--LKPLPDGLFAPEIEGANDQIRKMTYQRAHELYGDPLPSIIEERLEKELKAII 817


>gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
 gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
          Length = 1449

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/479 (14%), Positives = 135/479 (28%), Gaps = 53/479 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            ++++D ET G     D   + A VR+  +     S + F       +      V +TGI
Sbjct: 422 TYIVFDVETTGLSAVYDTIIELAAVRM-HKGNVEGSFDEF---IDPGHPLSRTTVELTGI 477

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  R   +F       I+  +N  FD  +    + +           
Sbjct: 478 TDEMVRGS-KSEEEVLRLFREF---SEGAILVAHNASFDMGFLNTSYRKYGIPEAEN--- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 531 ---PVIDTLELARYLY-------------PEFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 574

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAP 242
           T  L W+  ++  +    L        +      +   P    +     A   N   +  
Sbjct: 575 TGHLAWIFVKEAMEKHGMLLHEDLNRHVGGENSFKAARPFHATILAKTQAGLKNLFKLIS 634

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
           ++    + D V     S  +++ + L       +       ++  V    K         
Sbjct: 635 MSNVKYFHDKVPRIPRSELVKLREGLLVGTACDKGEVFVAMMQKGVDAARKLAEFYDYIE 694

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +MP +            +     + +  L +  N   +        +  + +D    +Y 
Sbjct: 695 VMPKEVYAHLIETELVKNESDLEDIIRNLIEIGNELGKVVVATGNVHYLNEEDA---IYR 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEK 415
               +           + P     ++   +D  L                 N       K
Sbjct: 752 KILINSMGGANPLNRHSLP----AVHFRTTDEMLTAFQFLGPDTAKEIVVTN-----PNK 802

Query: 416 EKQDWLEHR--KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                 +    K  L   +I   + ++  L    + E  GD   E +   L + L  +I
Sbjct: 803 IADMCEKVIPVKDDLYTPKIPGSEQEITDLSYNRAKELYGDPLPEIVEKRLKKELDSII 861


>gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 1367

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/471 (15%), Positives = 132/471 (28%), Gaps = 42/471 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D+ET G D  +D   +   V++ +  + ++                  +  ITGI
Sbjct: 357 TFVVLDFETTGLDPQVDEIIEIGAVKI-QDGQIVDEYHTL---IKPSREISRRSSEITGI 412

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          E       F       II  +N  FD  + R    +     +   + 
Sbjct: 413 TQEMLENK-RSIEEVLPEFLGFLENS---IIVAHNANFDYRFLRLWIKKVMGLDWERPYI 468

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +  +    L  MR                    S+ L  +    G+     H A  D   
Sbjct: 469 DTLALAKSLLKMR--------------------SYSLDSVVEKLGLGPFRHHRALDDARV 508

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +     E   K+   +        L+  ID   + P      +              
Sbjct: 509 TAQVFLRFVEMMKKIG--ITKLSEIENLKDTIDYTALKPFHCTILVQNKKGLKNLYKLVS 566

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKCPI 302
             + +Y   V     S  +   + L               L+G     ++E+        
Sbjct: 567 DSYIKYFYGVPRILKSALIENREGLLVGSACISGELGRAALEGASDSELEEIAKFYDYIE 626

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +MP+D   ++  +      K     L  + ++ N                     + L  
Sbjct: 627 VMPLDVIAEDEEDLDRERLKEVYRRLYRIAKKLNKF-VVMTGDVHFLDPEDARGRAALLA 685

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                         LRT  E L      F D    E+  R      P+ +     ++   
Sbjct: 686 PQGNRNFENQPALYLRTTEEMLEKAMEIFEDE---EIA-REVVIENPNRI-ADMIEEVQ- 739

Query: 423 HRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             +K L    IE     +++L    + E  GD   E +   + + L  +I 
Sbjct: 740 PLEKKLHPPIIENADEIVRNLTMKRAYEIYGDPLPEIVQKRVEKELNAIIN 790


>gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT]
 gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           novyi NT]
          Length = 1444

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 67/482 (13%), Positives = 148/482 (30%), Gaps = 60/482 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +F  V++ +    I+S   F      +     +   +T 
Sbjct: 429 DTFVVFDLETTGFSSQYDKIIEFGAVKI-KNGNIIDSFSAF---VNPEIKIPYKITELTS 484

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++    + + +F       ++  +N  FD  + R        +      
Sbjct: 485 ITNDDVKDAETID----KVLPKFIKFAEGTVLVAHNSNFDMSFIRKNCKDLNIECNYT-- 538

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D + + +                     +KL  +A   G+   N H A  D  
Sbjct: 539 -----VMDTIPLAK-------------FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAK 580

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241
           AT  ++    +   ++     D  N   L  +   +  T  + +        ++   LI+
Sbjct: 581 ATGDILVHCFKLLKEMNITYLDDLNNKFLGNIDVKKLPTYHLIILAKNQVGLKNLYKLIS 640

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV--PIKEVHLNK 299
                  YK   +  +L    +    + S   A  ++ +  E K    +   IK     +
Sbjct: 641 FSNLDYFYKKPRMPKSLIEQYKEGLIIGSACEAGEVYKAVLEGKSNEDLKEIIKFYDYLE 700

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              +M  ++  ++   +     K     +  L              N     ++ DV   
Sbjct: 701 IQPIMNNEFMLRKGIVKNQDQLKEINRKIYELGIN-----------NNMPVVATGDVHFL 749

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRAR--------NFPHT 411
                              +  E    L L  ++  L E  F Y           N P  
Sbjct: 750 DPKDGKFREILMAGQGF--SDAENQPPLYLKTTNEMLKE--FEYLGEDIAKEVVINNPQK 805

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467
           ++     ++++         +I+  +  +++++ E      G+   + + + L + L  +
Sbjct: 806 IANAV--EFVKPIPDETFPPKIDGAEEDIRNMTLEKAYSIYGNPLPKVVHDRLEKELNSI 863

Query: 468 IP 469
           I 
Sbjct: 864 IN 865


>gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8]
 gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8]
 gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima]
          Length = 1367

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/473 (15%), Positives = 135/473 (28%), Gaps = 46/473 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D+ET G D  +D   +   V++ +  + ++                 ++  ITGI
Sbjct: 357 TFVVLDFETTGLDPQVDEIIEIGAVKI-QGGQIVDEYHTL---IKPSREISRKSSEITGI 412

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          E       F       II  +N  FD  + R    +     +   + 
Sbjct: 413 TQEMLENK-RSIEEVLPEFLGFLEDS---IIVAHNANFDYRFLRLWIKKVMGLDWERPY- 467

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                               D +          S+ L  +    G+     H A  D   
Sbjct: 468 -------------------IDTLALAKSLLKLRSYSLDSVVEKLGLGPFRHHRALDDARV 508

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +     E   K+         K  L+  ID   + P      +              
Sbjct: 509 TAQVFLRFVEMMKKIGITKLSEMEK--LKDTIDYTALKPFHCTILVQNKKGLKNLYKLVS 566

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKCPI 302
             + +Y   V     S  +   + L               L+G     ++E+        
Sbjct: 567 DSYIKYFYGVPRILKSELIENREGLLVGSACISGELGRAALEGASDSELEEIAKFYDYIE 626

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +MP+D       +   +D +R  E    L +     ++F  +    +    +D   +   
Sbjct: 627 VMPLDVIA---EDEEDLDRERLKEVYRKLYRIAKKLNKFVVMTGDVHFLDPEDARGRAAL 683

Query: 363 GFFADVDRQIMDR--ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                           LRT  E L      F D    E+  R      P+ +     ++ 
Sbjct: 684 LAPQGNRNFENQPALYLRTTEEMLEKAIEIFEDE---EIA-REVVIENPNRI-ADMIEEV 738

Query: 421 LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
               +K L    IE     +++L    + E  GD   E +   + + L  +I 
Sbjct: 739 Q-PLEKKLHPPIIENADEIVRNLTMKRAYEIYGDPLPEIVQKRVEKELNAIIN 790


>gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum BKT015925]
          Length = 1443

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 67/482 (13%), Positives = 149/482 (30%), Gaps = 60/482 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G   A D+  +   V++ +    I+S   F      +         +T 
Sbjct: 428 DTFVVFDLETTGFSSAYDKIIEIGAVKI-KNGNIIDSFSTF---VNPEIKVPYNITELTS 483

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++      + +F       ++  +N  FD  + R        D      
Sbjct: 484 ITNDDVKNADTID----SILPKFIEFCGDSVLVAHNANFDMSFIRKNCNDLNIDINYT-- 537

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D + + +                     +KL  +A   G+   N H A  D  
Sbjct: 538 -----VMDTVPLAK-------------FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAK 579

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241
           AT  ++    +    +     D  NK  L  +   +  T  + +        ++   LI+
Sbjct: 580 ATGDILLCCFKLLDDMKITSLDSLNKEFLGNIDVKKLPTYHLIILAKNQVGLKNLYKLIS 639

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299
                  ++   +  +L    +    + S   A  ++ +    + +  +   IK  +  +
Sbjct: 640 YSNLDYFFRKPRMPKSLIEQYKEGLIIGSACEAGEVYKAVLEGKSQEELKQMIKFYNYLE 699

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              +M  ++  K+   +     K     +  L +            N     ++ DV   
Sbjct: 700 IQPIMNNEFMLKKGIVKSEEQLKEVNRKIYNLGK-----------ENGLPVVATGDVHFL 748

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRAR--------NFPHT 411
                              +  E    L L  ++  L E  F+Y             P  
Sbjct: 749 DPKDAKFREILMKGQGF--SDAEDQPPLYLKTTNEMLKE--FQYLGDDACKEVVIYNPQK 804

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467
           ++E+   + ++         +IE  +  +++++ E      G+   + + + L + L  +
Sbjct: 805 IAEEV--EVVKPIPDETFPPKIEGAEEDIRNMTLEKAYSIYGNPLPKVVHDRLEKELNSI 862

Query: 468 IP 469
           I 
Sbjct: 863 IN 864


>gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1442

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/475 (12%), Positives = 130/475 (27%), Gaps = 47/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++ +  E +++ E F              + +T I
Sbjct: 426 TYVVFDVETTGLSAVYDTIIEIAAVKI-QDGEVVDTFERFA---NPGRPLSNTIIELTHI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            + S  + ++       ++  +N  FD  +      +           
Sbjct: 482 TDDMLKDAP----DISEVLKEYNEWIGDAVLVAHNASFDIGFLNVGLKKAGLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + N   D L++ R +Y                 +++L  LA    +E    H A  D  A
Sbjct: 532 SNNPVIDTLELGRFLY-------------PDFKNYRLNTLAKKFNVELTQHHRAIYDTEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +   + +   +     Y       + +    +   P      +              
Sbjct: 579 TGQIFLKMLK-DARNRGITYHDELNQYMGEGGAYKRARPSHCTLLVRTQEGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S   +  + +       +       ++       +         +
Sbjct: 638 LSHIDYFYRVPRIPRSELQKYREGILVGSGCDKGEVFEGMMQKDPAEVEEIARFYDYLEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P +       +    D K   E   ++ +   L ++              + + ++Y  
Sbjct: 698 HPKEVYAPLIDQELIRDEKALEE---IITKIVRLGEKLNLPVVATGNVHYLNPEDKIYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
                            P+    ++   +D  L    F          +           
Sbjct: 755 ILISSQGGANPLNRHRLPD----VHFRTTDEMLACFSF--LGEEKAKEIVVDNTNKIAGL 808

Query: 424 R------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                  K  L   +IE  + +++  S +      GD   E +   L + L+ +I
Sbjct: 809 IEDVKPVKDELYTPKIEGAEEEIREQSYKRAKMIYGDPLPEIVEARLEKELKSII 863


>gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195]
          Length = 1437

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 134/476 (28%), Gaps = 46/476 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIDKFEAFA---NPHRPLSATIIELTG 474

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            +    I  F       I+  +N  FD  +    + +          
Sbjct: 475 ITDDMLQDAP----DVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLLEVD----- 525

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 526 KAKNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 572

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +   +     +D  N   + +    Q   P         ++         
Sbjct: 573 ATAYLLLKMLKDAAEKGIQYHDELN-ENMGQSNAYQRSRPYHATLLAVNSTGLKNLFKLV 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H  Y   V     S   +  + L       R       ++                 
Sbjct: 632 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P +  +         D K   E   ++   T L ++              + + ++Y 
Sbjct: 692 VQPPEVYRHLLELELVRDEKALKE---IIANITKLGEKLNKPVVATGNVHYLNDEDKIYR 748

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420
                               +L  ++   +D  L    F +        +     Q    
Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEEKAKEIVVTNTQKVAS 802

Query: 421 ----LEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
               ++  K  L   +IE    +++ +S +      G+E  E +   + + L+ +I
Sbjct: 803 LVDDIKPIKDDLYTPKIEGADEEIREMSYQRARSIYGEELPEIVEARIEKELKSII 858


>gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032]
 gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
           SAFR-032]
          Length = 1437

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 64/475 (13%), Positives = 135/475 (28%), Gaps = 46/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++ +  E I+  E F       +      + +TGI
Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKI-KGGEIIDRFEAFA---NPHHPLSATTIELTGI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +    +  F       I+  +N  FD  +    + R        +  
Sbjct: 476 TDDMVRDAP----DVVDVVRDFKEWIGQDILVAHNASFDMGFLNTAYKRLL-----KTDK 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L++ R +Y                 + +L  L     IE    H A  D  A
Sbjct: 527 ASNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDAEA 573

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+  + +      +  Y  +    + +    Q   P   +      +          
Sbjct: 574 TGYLMLKMLK-DAAEKDIAYHDQLNENMGQSNAYQRSRPYHAILIAQNETGLKNLFKLVS 632

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S   +  + L       +       ++                 +
Sbjct: 633 LSHIHYFYRVPRIPRSQLEKYREGLIIGSACDKGEVFEGMMQKSPDEVEDIAAFYDYLEV 692

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P +  +         D +   E   ++     L ++                + ++Y  
Sbjct: 693 HPPEVYQHLLQLELVRDERALKE---IITNIVKLGEKLNKPVVATGNVHYLHPEDKIYRK 749

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL------SEKEK 417
                              +L  ++   +D  L    F +        +         E 
Sbjct: 750 ILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEEKAKEIVVTNTKKVSEM 803

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
            + ++  K  L   +IE    +++ +S +      GD+  + + + + + L+ +I
Sbjct: 804 VESIKPIKDDLYTPKIEGADEEIREMSYQMARSIYGDDLPKIVEDRIEKELKSII 858


>gi|320541129|ref|ZP_08040515.1| putative exonuclease I [Serratia symbiotica str. Tucson]
 gi|320028808|gb|EFW11101.1| putative exonuclease I [Serratia symbiotica str. Tucson]
          Length = 107

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 66/101 (65%), Positives = 78/101 (77%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N F  +DYETFG+  ++DRPAQFAGVR D  +  IE   V +C PADDYLP+PEAV IT
Sbjct: 7   QNTFYFHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPEPEAVMIT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
           GITPQ+A   GV EAEF+R+IHQ FS+P TCI+GYNNIRFD
Sbjct: 67  GITPQQARAKGVNEAEFARQIHQAFSMPGTCILGYNNIRFD 107


>gi|307069516|ref|YP_003877993.1| putative exonuclease I [Candidatus Zinderia insecticola CARI]
 gi|306482776|gb|ADM89647.1| putative exonuclease I [Candidatus Zinderia insecticola CARI]
          Length = 471

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 106/474 (22%), Positives = 205/474 (43%), Gaps = 19/474 (4%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F+ YDYETF  +     P+QFA +R +   + I+  ++ +CKP   ++P P+++ + 
Sbjct: 3   KYNFLWYDYETFNLNKNFTFPSQFASIRTNLNLKIIKKYKIIYCKPDGSFMPCPKSILLN 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I PQ   + G+ E +F+ +I++    P T  IGYNNI FDD  +R +F+RN  + Y   
Sbjct: 63  KILPQYCEKYGIKEYKFANKINKIMLKPYTINIGYNNINFDDIITRFLFWRNLLNPYERE 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N  S +D  ++++ IY  + + ++W  + +   SFKL D++  NG  +   H+A  DV
Sbjct: 123 WKNKCSTYDFFNIIKIIYFINYNSLKWFKKKNKKISFKLSDISKINGYLNKFFHNALFDV 182

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            ATL    +I++K  KLF      RNK  + K   +      +++S  +        ++ 
Sbjct: 183 NATLFCAKIIKKKNFKLFYKFIKLRNKKNIIK-NILFKKKVFLYLSNKYPFFEKEIFILL 241

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           P+    + K+ +I             L+        F    +          ++      
Sbjct: 242 PLFIDNKNKNKLIC------------LNINSNFNNFFDFKKKYNFKKINNYIKIININKY 289

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRF--KAIYNKPYTSSSQDVDSQ 359
            ++  +  K      + I+     +N+T +     L      K  YN  Y          
Sbjct: 290 PIIFFNIKKILKKINFKINFNLIKKNITKINNNIKLILNIYKKFNYNYKYKKILNINFDL 349

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
             + F +  D+  +  I +    ++      F +  +  L F Y+ + +   +S  EK+ 
Sbjct: 350 YNNFFISLNDKYNIKIIKKLNINKIHNKKFYFYNNNIKILCFFYKLKKYKKYISNFEKKI 409

Query: 420 WLEHRKKMLTR--SRIEEYKNKLQSLSGEYK--GDEGKEGLINALYEYLQWVIP 469
           W+++ K  L +  +    +  KL  +  +Y    ++ K+ ++  L  Y + + P
Sbjct: 410 WIKYCKINLLKNYNNELNFFEKLFYIKKKYLKCSNKYKKKILYFLINYARKINP 463


>gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
 gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
          Length = 1439

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/476 (12%), Positives = 139/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     DR  + + V++ +    I+  E F       +        +T I
Sbjct: 419 TYVVFDTETTGLSAIYDRVIELSAVKM-QNSNVIDQFEEF---IDPGFHLSERTTNLTSI 474

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  +   +F       I+  +N+ FD  +    + R+     +    
Sbjct: 475 TDEMVHGS-KSEEEVFKLFREF---CGDAIVVGHNVTFDMGFMNTGYVRHGMHEMQN--- 527

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R +Y                  ++L  LA    +   + H A  D   
Sbjct: 528 ---PIIDTLTLARFLY-------------PNLRGYRLNTLAKKFDVSLEHHHRAIYDAET 571

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L +L  +     +  +Y  +  + +      ++  P   +      +          
Sbjct: 572 TGHLNYLFLKDAEDRYGIVYHDQLNDHMTDNDAYRHARPSHAILLAKTQAGLKNMFKIVS 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y   V     +   +    L               ++  +    ++        +
Sbjct: 632 LSNVKYFYRVPRVPRTQLEKYRDGLIVGSACSSGEVFTAMMQKGLDEARQKAGFYDYLEV 691

Query: 304 MPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D +   + L  +++    L     A  +  Y +    +  ++  
Sbjct: 692 QPKRAYAPLIESGLIADDENLEQILTNMVKLGDELDKPVVATGDVHYLNPQDYIYRKILI 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                 +             +L  L+   +D  L +  F          +         +
Sbjct: 752 NSQGGANPLNRQ--------ELPDLHFLTTDEMLSDFNF--LGPEKAEEIVVDNTNQIAD 801

Query: 423 HR------KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   R+E  +++++      +  + GD   + + + L + L+ +I
Sbjct: 802 EIEDVHPLKDKLYTPRMEGAEDEIKSRTMDTAHAWYGDPLPKIVSDRLDKELKSII 857


>gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K]
 gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 1446

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 145/477 (30%), Gaps = 52/477 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   + A V++ R  E + S + F      +         +T IT
Sbjct: 425 YVIFDVETTGLSAVYDSIIELAAVKM-RDGEVVASFDEF---IDPERPLSAFTTQLTSIT 480

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        EAE      +F       ++  +N+ FD  +    + RN  D        
Sbjct: 481 NEMVHGAKK-EAEVLAMFKEFT---GDAVLAGHNVSFDMGFLNAGYERNDIDLI------ 530

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                 + KL  L     I   + H A AD  +T
Sbjct: 531 DNPVIDTLELSRMLH-------------PEYKNHKLDSLTKRYKINLEHHHRANADAEST 577

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + ++  + ++ +   +  +++      +   P   V      +          A
Sbjct: 578 GYLLYKLEKEAAENYDMVNVNQLNDRVGVGEFYKQARPAHAVLMAQTQAGLKNLFKLVSA 637

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
               Y         S    + + +               ++      +          +M
Sbjct: 638 SMTEYYYRTPRLPKSKLDALREGILVGSACSNGEVFEAMMQKGYNEALDRAKYYDYIEVM 697

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P              D++   E   ++R    + ++          +   + +  +Y   
Sbjct: 698 PKAVYAPLLERELVRDNRALEE---IIRNLVKVGEKLNKPVVATGDAHYLNPEDAIYRKI 754

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPHTLSEKEK 417
                             +L  ++   +D  L       PEL       N      +K  
Sbjct: 755 LIHSMGGANPLNRS----KLPDVHFRSTDEMLTAFDFLGPELAQELVVAN-----PQKIA 805

Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
               E    K  L   ++   ++++Q+L    + E  G E  E +   L + L+ +I
Sbjct: 806 DQIDEIVPVKDKLYTPKMAGAEDEIQTLTMNRAHELYGAELPEIVEARLKKELKSII 862


>gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2]
 gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2]
          Length = 1463

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/476 (15%), Positives = 134/476 (28%), Gaps = 46/476 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E IE  E F              + +TG
Sbjct: 420 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIERFERFA---NPHRPLSATIIELTG 475

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E    I  F        +  +N  FD  +    + R        S 
Sbjct: 476 ITDDMLKDAP----EVEEVIRDFKEWVGDHTLVAHNASFDIGFINVAYKRLL-----NSE 526

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 527 KVQNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 573

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +        LY  +    + +    Q   P          +         
Sbjct: 574 ATGYLLVKMLK-DAAEKNILYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLV 632

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H  Y   V     S   +  + L       +       ++                 
Sbjct: 633 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDKGEVFEGMMQKSPEEVEDIASFYDYLE 692

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +MP +  +         D K   E   ++   T L ++              + + ++Y 
Sbjct: 693 VMPPEVYRHLLQLELVRDEKALKE---IIANITKLGEKLNIPVVATGNVHYLNPEDKIYR 749

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                               +L  ++   +D  L    F +        +    +    +
Sbjct: 750 KILVSSQGGANPLNRH----ELPNVHFRSTDEMLE--AFSFLGEEKAKEIVVKNTRMISE 803

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
              E    K  L   +IE   ++++ +S E      G++  E +   + + L+ +I
Sbjct: 804 RIEEIKPIKDDLYTPKIEGADDEIRRMSYEKARSIYGEDLPEIVEKRIEKELKSII 859


>gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis]
 gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 1437

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 134/476 (28%), Gaps = 46/476 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIDKFEAFA---NPHRPLSATIIELTG 474

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            +    I  F       I+  +N  FD  +    + +          
Sbjct: 475 ITDDMLQDAP----DVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLL-----EVE 525

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 526 KAKNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 572

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +   +     +D  N   + +    Q   P         ++         
Sbjct: 573 ATAYLLLKMLKDAAEKGIQYHDELN-ENMGQSNAYQRSRPYHATLLAVNSTGLKNLFKLV 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H  Y   V     S   +  + L       R       ++                 
Sbjct: 632 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P +  +         D K   E   ++   T L ++              + + ++Y 
Sbjct: 692 VQPPEVYRHLLELELVRDEKALKE---IIANITKLGEKLNKPVVATGNVHYLNDEDKIYR 748

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420
                               +L  ++   +D  L    F +        +     Q    
Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEEKAKEIVVTNTQKVAS 802

Query: 421 ----LEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
               ++  K  L   +IE    +++ +S +      G+E  E +   + + L+ +I
Sbjct: 803 LVDDIKPIKDDLYTPKIEGADEEIREMSYQRARSIYGEELPEIVEARIEKELKSII 858


>gi|312869005|ref|ZP_07729182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus oris PB013-T2-3]
 gi|311095431|gb|EFQ53698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus oris PB013-T2-3]
          Length = 1444

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/447 (12%), Positives = 123/447 (27%), Gaps = 43/447 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +VI+D ET G     D+  + + V++ +  E +   + F       +    +   +T 
Sbjct: 421 NTYVIFDVETTGLSAIYDKVIELSAVKM-KNGEVLARFDEF---IDPGFPLSEQTTNLTS 476

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +        E E  +    F       II  +N+ FD  +    + R+  +      
Sbjct: 477 ITDEMVRGS-KTEEEVFKMFKDF---CQGTIIAGHNVSFDMGFMNTGYRRHQMEEI---- 528

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + R +Y                  ++L  L+    +   + H A  D  
Sbjct: 529 --TEPVIDTLPLARFLY-------------PNMRGYRLNTLSKKFKVALEHHHRANYDAE 573

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L++   +   K +E  Y       + +    ++  P          +         
Sbjct: 574 ATGHLLYKFLKDAEKRYEIRYVDDLNQHMAENDAYKHARPFHVTLLAQTQAGLKNLFKLV 633

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              + RY   V     +   +  + L               ++   P  +K+        
Sbjct: 634 SLSNVRYFHRVPRIPRTVLTKYREGLLLGTACSSGEVFTAMMEKGYPEALKKARYYDYIE 693

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +  +            ++L  + Q                             
Sbjct: 694 IQP----RPNYAPLLETHVIADRDHLDDILQNMVKLGTELKKPVVATGDVHYINPHDGIY 749

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEK 415
                  +   + + RT   +   ++   +D  L E          +    N        
Sbjct: 750 RRILINSQGGANPLNRT---RRPDVHFRTTDEMLEEFSFLGEDTAKQVVVDNSHAI--AD 804

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQS 442
              D +   K  L    ++  + ++Q 
Sbjct: 805 MIADDIRPVKDKLYTPHMKGAEQEIQD 831


>gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1436

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/476 (15%), Positives = 141/476 (29%), Gaps = 47/476 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     +   + A V+V +  E I+    F       +      + +TG
Sbjct: 419 DTYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFTSFA---NPHHPLSMTTIELTG 474

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         VE E  R+ + +       ++  +N  FD  +    F +          
Sbjct: 475 ITDDMLKDAPDVE-EVLRQFYDWI---GDSVLVAHNASFDIGFLNVGFAKIGLG------ 524

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 525 KVTNPVIDTLELARFLY-------------PDLKNHRLNTLCKKFDIELTQHHRAIYDAE 571

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +   +     +D  NK   ++ +  Q   P                    
Sbjct: 572 ATGYLLMRMLKDAQERGILYHDELNKRS-KEEVSYQRSRPFHVTLLAQNDIGLKNLFKLV 630

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H +Y   V     S   +  + +       +     + ++       +         
Sbjct: 631 SLSHVKYFYRVPRIPRSVLQQHREGILVGSGCDKGEVFDNMIQKAPEEVEEIAQFYDFLE 690

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P +  K      +  D     E   ++R+   L ++              + + ++Y 
Sbjct: 691 VHPPEVYKPLIDMDYVKDENMIKE---IIRKIVMLGEKLNIPVVATGNVHYLNREDKIYR 747

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                               +L  +    +D  L    F          +     +K   
Sbjct: 748 KILIHSQGGANPLNRY----ELPDVYFRTTDEMLECFSF--LGEEKAKEIVVTNPQKIAS 801

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              E    K  L   RIE  + +++ +    + E  GD   E +   L + L+ +I
Sbjct: 802 LIDEVKPIKDKLYTPRIEGAEEEIREMSYRRAKEIYGDPLPEIVEQRLEKELKSII 857


>gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1437

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 131/476 (27%), Gaps = 46/476 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIDKFEAFA---NPHRPLSATIIELTG 474

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            +    I  F       I+  +N  FD  +    + +          
Sbjct: 475 ITDDMLRDAP----DVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLL-----EVE 525

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 526 KAKNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 572

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +   +     +D  N   + +    Q   P         ++         
Sbjct: 573 ATAYLLLKMLKDAAEKGIQYHDELN-ENMGQSNAYQRSRPYHATLLAVNSTGLKNLFKLV 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H  Y   V     S   +  + L       R       ++                 
Sbjct: 632 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDVASFYDYLE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P +  +         D K   E   ++   T L ++              + + ++Y 
Sbjct: 692 VQPPEVYRHLLELELVRDEKSLKE---IIANITKLGEKLNKPVVATGNVHYLNDEDKIYR 748

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420
                               +L  ++   +D  L    F +        +     Q    
Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEEKAKEIVVTNTQKVAS 802

Query: 421 ----LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468
               ++  K  L   +IE    +++ +S +       E L       + + L+ +I
Sbjct: 803 LIDDIKPIKDDLYTPKIEGADEEIREMSYQRARSIYGEQLPEIVEARIEKELKSII 858


>gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
           14580]
 gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580]
          Length = 1438

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/476 (15%), Positives = 134/476 (28%), Gaps = 46/476 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E IE  E F              + +TG
Sbjct: 420 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIERFERFA---NPHRPLSATIIELTG 475

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E    I  F        +  +N  FD  +    + R        S 
Sbjct: 476 ITDDMLKDAP----EVEEVIRDFKEWVGDHTLVAHNASFDIGFINVAYKRLL-----NSE 526

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 527 KVQNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 573

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +        LY  +    + +    Q   P          +         
Sbjct: 574 ATGYLLVKMLK-DAAEKNILYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLV 632

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H  Y   V     S   +  + L       +       ++                 
Sbjct: 633 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDKGEVFEGMMQKSPEEVEDIASFYDYLE 692

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +MP +  +         D K   E   ++   T L ++              + + ++Y 
Sbjct: 693 VMPPEVYRHLLQLELVRDEKALKE---IIANITKLGEKLNIPVVATGNVHYLNPEDKIYR 749

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                               +L  ++   +D  L    F +        +    +    +
Sbjct: 750 KILVSSQGGANPLNRH----ELPNVHFRSTDEMLE--AFSFLGEEKAKEIVVKNTRMISE 803

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
              E    K  L   +IE   ++++ +S E      G++  E +   + + L+ +I
Sbjct: 804 RIEEIKPIKDDLYTPKIEGADDEIRRMSYEKARSIYGEDLPEIVEKRIEKELKSII 859


>gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1]
 gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga
           petrophila RKU-1]
 gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 1367

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/471 (15%), Positives = 131/471 (27%), Gaps = 42/471 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D+ET G D  +D   +   V++ +  + ++                  +  ITGI
Sbjct: 357 TFVVLDFETTGLDPQVDEIIEIGAVKI-QDGQIVDEYHTL---IKPSREISRRSSEITGI 412

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          E       F       II  +N  FD  + R    +     +   + 
Sbjct: 413 TQEMLENK-RSIEEVLPEFLGFLENS---IIVAHNANFDYRFLRLWIKKVMGLDWERPYI 468

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +  +    L  MR                    S+ L  +    G+     H A  D   
Sbjct: 469 DTLALAKSLLKMR--------------------SYSLDSVVEKLGLGPFRHHRALDDARV 508

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +     E   K+   +        L+  ID   + P      +              
Sbjct: 509 TAQVFLRFVEMMKKIG--ITKLSEIENLKDTIDYTALKPFHCTILVQNKKGLKNLYKLVS 566

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKCPI 302
             + +Y   V     S  +   + L               L+G     ++E+        
Sbjct: 567 DSYIKYFYGVPRILKSALIENREGLLVGSACISGELGRAALEGASDSELEEIAKFYDYIE 626

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +MP+D   ++  +      K     L  + ++ N                     + L  
Sbjct: 627 VMPLDVIAEDEEDLDRERLKEVYRRLYRIAKKLNKF-VVMTGDVHFLDPEDARGRAALLA 685

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                         LRT  E L      F D    E+  R      P+ +     ++   
Sbjct: 686 PQGNRNFENQPALYLRTTEEMLEKAMEIFEDE---EIA-REVVIENPNRI-ADMIEEVQ- 739

Query: 423 HRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             +K L    IE     ++SL    + E  GD   E +   +   L  +I 
Sbjct: 740 PLEKKLHPPIIENADEIVRSLTMKRAYEIYGDPLPEIVQKRVERELNAIIN 790


>gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367]
 gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           brevis ATCC 367]
          Length = 1445

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/475 (12%), Positives = 139/475 (29%), Gaps = 46/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + + V+++ Q   ++  E F       +    +   +T I
Sbjct: 424 TYVVFDVETTGLSAIYDKVIELSAVKMEHQ-NVVDQFEEF---IDPGFPLSEQTTNLTSI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E  +   +F       II  +N+ FD  +    + R+          
Sbjct: 480 TDDMVAGS-KSEEEVFKLFREF---CGDAIIVGHNVTFDVGFMNTGYQRHGMAEI----- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L + R +Y                 S++L  LA    +   + H A  D  +
Sbjct: 531 -SNPIIDTLTLARFLY-------------PTLKSYRLNTLAKRFHVSLEHHHRAVYDAES 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L +L  +     ++  Y  +  + +      ++  P   +      +          
Sbjct: 577 TGHLNYLFLKDAEDRYDIQYHDQLNDHMTDNDAYKHARPNHAILLAKTQAGLKNMFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A +  Y   V     S      + +               ++        +        +
Sbjct: 637 ASNVDYYYRVPRVPRSVLEEYREGIIVGSACSSGEVFTAMMQKGQVEAAAKAKFYDYLEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P    +         D +   E +  + +  +  ++        +  +  D   +    
Sbjct: 697 QPSAAYQPLIDSGLIADRENMEEIVRNMVKLGHDLNKPVVATGDVHFLNPDDYIYRKILI 756

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
                   +  +       +L  ++   +D  L +    Y        +     Q   + 
Sbjct: 757 HSQGGANPLNRQ-------ELPDVHFMTTDEMLTDFA--YLGEETAKEIVVTNTQKIADD 807

Query: 424 R------KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
                  K  L   R+E  +++++      +    GD   E + + +   L+ +I
Sbjct: 808 IDEVHPLKDKLYTPRMEGAEDEIRQRTMDTAHAMYGDPLPELVQHRVDRELKSII 862


>gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
 gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
          Length = 1443

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/481 (15%), Positives = 142/481 (29%), Gaps = 59/481 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   A D   + A V++ +  + I+  E F       +      + +TGI
Sbjct: 427 TYVVFDVETTGLSTAYDTIIELAAVKI-KDGQVIDKYESFA---NPHHPLSATTIELTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         VE +  +  H F       I+  +N  FD  +    + +   +       
Sbjct: 483 TDDMVRNAPEVE-QVIKEFHAFI---GDAIVVAHNASFDIGFLYTGYKKFGLED------ 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +   D L++ R +Y                 + +L  L     IE    H A  D  A
Sbjct: 533 TVHPVIDTLELARLLY-------------PTMKNHRLNTLCKKFNIELTQHHRAIYDTEA 579

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+  + +   +L    +D  NK+ +      +   P+         +          
Sbjct: 580 TGYLLLQLLKDADELAIKYHDDFNKH-IGGGDAYKKGRPMHCTILAVDNAGLKNLFKIVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H +    V     +   +  + L               +        K         +
Sbjct: 639 HSHTKTFYRVPRVTRAVLEQYREGLLVGSGCSNGEVFETMMNKSPEEAEKVARFYDYIEV 698

Query: 304 MPIDYCKKEHFE---RWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            P             R     +  +    L++    L     A  N  Y   +  +  Q+
Sbjct: 699 QPKAVYAPLIERNVVRDEWTLEDIIR--KLVKLGKKLDKPVVATGNVHYLDPTDGMFRQI 756

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
             G     +     +        L  ++   +D  L E  F       P    E    + 
Sbjct: 757 LIGSQGGANILNRSK--------LPEVHFRTTDEMLKEFDFL-----GPDLAKEVVVTNA 803

Query: 421 LEH---------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467
            +           K  L   +IE   +++ +L+ E      G+E  E +   + + L+ +
Sbjct: 804 QKVAASIGDVKPIKDDLYTPKIEGSDDEVTNLTYEMAHRIYGEELPEIVKARIEKELKSI 863

Query: 468 I 468
           +
Sbjct: 864 L 864


>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
 gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
          Length = 1434

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/476 (13%), Positives = 138/476 (28%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + A V+V +  E I+  E F          +     +TGI
Sbjct: 417 TYVVFDVETTGLSSQYDKIIELAAVKV-KDGEIIDKFERFS---NPGERLNETIKNLTGI 472

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      ++ F       I   +N  FD  +    F R  Y        
Sbjct: 473 TDDMLIDAPPIE----SVLNDFKDFVGDAIYVAHNASFDMGFIDTGFDRLGY-------- 520

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G +   ++D +      + +  +            L  LA   G+E    H A  D   
Sbjct: 521 -GPTENGVIDTLELSRTINTEMGK----------HGLNFLAKKYGVELTQHHRAIYDAET 569

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +   ++++ +        +   K   +          +  +       ++   +++ 
Sbjct: 570 TAHIFVKMLKQMETLGVTNHKEIDLKLSNKDAYKRARPMHVTLIVQNQKGLKNLFKIVSD 629

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +L  + R    + S      +FT    ++       K         
Sbjct: 630 SMVKYFYRTPRIPRSLLNEYREGILVGSACDNGEVFT--AVMQKDQEEVEKIARYYDYLE 687

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +    +    D++   E    +            I      +     +     
Sbjct: 688 VQPKALYQHLLDKDLIRDNETMEEIYQRI----LDVGEKLDIPVLATGNVHYLNEHDKIA 743

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                          +T P+     +   +D  L    F +      + +    + +   
Sbjct: 744 REILIASNPGNPLNRQTLPD----AHFRTTDEMLD--AFHFLGEEKAYEIVIKNTNELAD 797

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   +  L    I+    +++ +    +    G+E  E ++  L + L  +I
Sbjct: 798 RIETVIPIQDKLFTPNIDGANEEIREMSYARARSIYGEELPEIVVARLEKELDSII 853


>gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
 gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
          Length = 1451

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 142/475 (29%), Gaps = 46/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D+  + A V++  +   I++ E F       +      + +T I
Sbjct: 432 TYVIFDTETTGLSAQYDKVIELAAVKM-EKGNVIDTFEEF---IDPGHPLSQTTINLTSI 487

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E  R   +F      CII  +N  FD  +    + R+  +  +  W 
Sbjct: 488 TDDMVRGS-KSEEEVFRLFKEF---CKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW- 542

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R +Y                  F+L  LA    I+  + H A  D  A
Sbjct: 543 -----IDTLPLARYLY-------------PEMKGFRLNTLAKKLNIKLEHHHRAIYDAEA 584

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  + + + +   +     +D  NK+                +         N   +   
Sbjct: 585 TGFIYYAMLKDAEEKQILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSE 644

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           +   +Y   V     S   +  + L               ++    +  ++        +
Sbjct: 645 SMV-KYFYRVPRVPRSILEKYREGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYDYLEV 703

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P    +    +    D+     NL  +                                
Sbjct: 704 QPKPLYEPLLEQELVKDND----NLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYR 759

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSEKEK 417
                 +   + + R   ++L   +   +D  L E  F     A+      P+ L ++  
Sbjct: 760 KILIHSQAGANPLNRL--KKLPDAHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEIS 817

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  +   K  L   ++E  +  +  L    +  + GD   E +   L + L+ VI
Sbjct: 818 E--ITPVKDKLYTPKMEGAEQDIHDLTMNRAHAWYGDTLPEIVQKRLDKELKSVI 870


>gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33]
 gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33]
 gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 05ZYH33]
 gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 98HAH33]
 gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1]
 gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14]
          Length = 1463

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/450 (13%), Positives = 114/450 (25%), Gaps = 40/450 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAVNNALIQIAASKM-HKGNIIAEFDEF---IDPGHPLSQFTTDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  R    F       ++  +N  FD  +    + R           
Sbjct: 480 TDEHVRGS-KPLEQVLREFQDF---CQDSVMVAHNATFDVGFMNVNYERAGLPII----- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 -SQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +   +L      +          +              
Sbjct: 577 TGRLLFIFLKDALEKHNLTNLNQLNTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L      +      D L   +   +K         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLNAHREGLILGTACQEGEVFDDLLSKGIDEAVKTAAYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357
           MP         +    D     E +  L +         L        +       + + 
Sbjct: 697 MPPALYAPMIAKEQFKDMAEIEETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIV 756

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEK 415
             L  G   +      +      P  L   +   +   L E  F     AR    T    
Sbjct: 757 RALGQGAPINWTIGNGE---NAQPAPLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNA 813

Query: 416 EKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443
               +   +  K  L    IE+ +  +  L
Sbjct: 814 MLDRFEDVQVVKTDLYTPYIEKAEETVAEL 843


>gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3]
 gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3]
          Length = 1463

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/450 (13%), Positives = 114/450 (25%), Gaps = 40/450 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAVNNALIQIAASKM-HKGNIIAEFDEF---IDPGHPLSQFTTDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  R    F       ++  +N  FD  +    + R           
Sbjct: 480 TDEHVRGS-KPLEQVLREFQDF---CQDSVMVAHNATFDVGFMNVNYERAGLPII----- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 -SQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +   +L      +          +              
Sbjct: 577 TGRLLFIFLKDALEKHNLTNLNQLNTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L      +      D L   V   +K         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLNAHREGLILGTACQEGEVFDDLLSKGVDEAVKTAAYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357
           MP         +    D     E +  L +         L        +       + + 
Sbjct: 697 MPPALYAPMIAKEQFKDMAEIEETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIV 756

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEK 415
             L  G   +      +      P  L   +   +   L E  F     AR    T    
Sbjct: 757 RALGQGAPINWTIGNGE---NAQPAPLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNA 813

Query: 416 EKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443
               +   +  K  L    IE+ +  +  L
Sbjct: 814 MLDRFEDVQVVKTDLYTPYIEKAEETVAEL 843


>gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
          Length = 1463

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/450 (13%), Positives = 113/450 (25%), Gaps = 40/450 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAVNNALIQIAASKM-HKGNIIAEFDEF---IDPGHPLSQFTTDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  R    F       ++  +N  FD  +    + R           
Sbjct: 480 TDEHVRGS-KPLEQVLREFQDF---CQDSVMVAHNATFDVGFMNVNYERAGLPII----- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 -SQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L++   +   +        +   +L      +          +              
Sbjct: 577 TGRLLFTFLKDALEKHNLTNLNQLNTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L      +      D L   +   +K         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLNAHREGLILGTACQEGEVFDDLLSKGIDEAVKTAAYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357
           MP         +    D     E +  L +         L        +       + + 
Sbjct: 697 MPPALYAPMIAKEQFKDMAEIEETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIV 756

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEK 415
             L  G   +      +      P  L   +   +   L E  F     AR    T    
Sbjct: 757 RALGQGAPINWTIGNGE---NAQPAPLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNA 813

Query: 416 EKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443
               +   +  K  L    IE+ +  +  L
Sbjct: 814 MLDRFEDVQVVKTDLYTPYIEKAEETVAEL 843


>gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
 gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
          Length = 1437

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 134/476 (28%), Gaps = 46/476 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIDKFEAFA---NPHRPLSATIIELTG 474

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            +    I  F       I+  +N  FD  +    + +          
Sbjct: 475 ITDDMLQDAP----DVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLLEVD----- 525

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 526 KAKNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 572

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +   +     +D  N   + +    Q   P         ++         
Sbjct: 573 ATAYLLLKMLKDAAEKGIQYHDELN-ENMGQSNAYQRSRPYHATLLAVNSTGLKNLFKLV 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H  Y   V     S   +  + L       R       ++                 
Sbjct: 632 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P +  +         D K   E   ++   T L ++              + + ++Y 
Sbjct: 692 VQPPEVYRHLLELELVRDEKALKE---IIANITKLGEKLNKPVVATGNVHYLNDEDKIYR 748

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420
                               +L  ++   +D  L    F +        +     Q    
Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEKKAKEIVVTNTQKVAS 802

Query: 421 ----LEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
               ++  K  L   +IE    +++ +S +      G+E  E +   + + L+ +I
Sbjct: 803 LVDDIKPIKDDLYTPKIEGADEEIREMSYQRARSIYGEELPEIVEARIEKELKSII 858


>gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 1444

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 142/475 (29%), Gaps = 46/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D+  + A V++  +   I++ E F       +      + +T I
Sbjct: 425 TYVIFDTETTGLSAQYDKVIELAAVKM-EKGNVIDTFEEF---IDPGHPLSQTTINLTSI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E  R   +F      CII  +N  FD  +    + R+  +  +  W 
Sbjct: 481 TDDMVRGS-KSEEEVFRLFKEF---CKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R +Y                  F+L  LA    I+  + H A  D  A
Sbjct: 536 -----IDTLPLARYLY-------------PEMKGFRLNTLAKKLNIKLEHHHRAIYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  + + + +   +     +D  NK+                +         N   +   
Sbjct: 578 TGFIYYAMLKDAEEKQILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSE 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           +   +Y   V     S   +  + L               ++    +  ++        +
Sbjct: 638 SMV-KYFYRVPRVPRSILEKYREGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYDYLEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P    +    +    D+     NL  +                                
Sbjct: 697 QPKPLYEPLLEQELVKDND----NLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYR 752

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSEKEK 417
                 +   + + R   ++L   +   +D  L E  F     A+      P+ L ++  
Sbjct: 753 KILIHSQAGANPLNRL--KKLPDAHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEIS 810

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  +   K  L   ++E  +  +  L    +  + GD   E +   L + L+ VI
Sbjct: 811 E--ITPVKDKLYTPKMEGAEQDIHDLTMNRAHAWYGDTLPEIVQKRLDKELKSVI 863


>gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118]
 gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1444

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 142/475 (29%), Gaps = 46/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D+  + A V++  +   I++ E F       +      + +T I
Sbjct: 425 TYVIFDTETTGLSAQYDKVIELAAVKM-EKGNVIDTFEEF---IDPGHPLSQTTINLTSI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E  R   +F      CII  +N  FD  +    + R+  +  +  W 
Sbjct: 481 TDDMVRGS-KSEEEVFRLFKEF---CKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R +Y                  F+L  LA    I+  + H A  D  A
Sbjct: 536 -----IDTLPLARYLY-------------PEMKGFRLNTLAKKLNIKLEHHHRAIYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  + + + +   +     +D  NK+                +         N   +   
Sbjct: 578 TGFIYYAMLKDAEEKQILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSE 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           +   +Y   V     S   +  + L               ++    +  ++        +
Sbjct: 638 SMV-KYFYRVPRVPRSILEKYREGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYDYLEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P    +    +    D+     NL  +                                
Sbjct: 697 QPKPLYEPLLEQELVKDND----NLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYR 752

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSEKEK 417
                 +   + + R   ++L   +   +D  L E  F     A+      P+ L ++  
Sbjct: 753 KILIHSQAGANPLNRL--KKLPDAHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEIS 810

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  +   K  L   ++E  +  +  L    +  + GD   E +   L + L+ VI
Sbjct: 811 E--ITPVKDKLYTPKMEGAEQDIHDLTMNRAHAWYGDTLPEIVQKRLDKELKSVI 863


>gi|150020931|ref|YP_001306285.1| DNA polymerase III PolC [Thermosipho melanesiensis BI429]
 gi|149793452|gb|ABR30900.1| DNA polymerase III, alpha subunit [Thermosipho melanesiensis BI429]
          Length = 1362

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/479 (15%), Positives = 147/479 (30%), Gaps = 51/479 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G +   D   +   V+  R  + I +   F                +TGI
Sbjct: 343 TYTVFDLETTGTNAKFDEIIEIGAVKY-RDGKVINTFSSF---VKPTKSISEFTQKLTGI 398

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       +E        +F    +  ++  +N  FD  + R +  R +         
Sbjct: 399 TDEMVKDAKSIE----EVFPEFLKFIDGTVLVAHNADFDYGFIREVNRRLY--------- 445

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N    +  LD ++         ++         SF L  L     +     H A  D   
Sbjct: 446 NKELDFAYLDTLKLSKVLLRGKVK---------SFGLGKLVEYFKLGPFKHHRAFEDASV 496

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  L   L+     +  + L    N      +  I+      H++ +         L   
Sbjct: 497 TADLFGKLLELLLKRGIKTLGQVNNLKNTSSISTIRTKKQFNHITILVRDKVGLKNLYKL 556

Query: 243 VA-WHPRYKDSVIGCNLSGDMRVFQDL------DSVQLAKRLFTSHDELKGLVPVPIKEV 295
           V+  H +Y   V        ++  + L      +S ++ + L  S  + +      ++ +
Sbjct: 557 VSDAHVKYFKYVPFVPKKELIKYREGLLLGTGCESGEIFQALTGSSTDEE-----ILEML 611

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                  + P+D       E     +KR  E    L     +              +   
Sbjct: 612 KDYDYVEIFPLDTIVSVEREVAKQVYKRLYELAKRLD-LPVVMVSNAHFLEPEDIKARHV 670

Query: 356 --VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
                +  +    D+  +     LRT  E +      F D ++             + ++
Sbjct: 671 LLSPIEKSNPHDDDLRDKDAKLYLRTTDEMMKEAFEIFEDEKIAY----EIVVENTNKIA 726

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
               +D  +  K+ L    IE    K++SL    + E  GD   + +   L + L+ +I
Sbjct: 727 NNMIEDV-KPIKRKLHPPIIEGADEKVRSLSIKRAKELYGDPLPDVIEKRLEKELESII 784


>gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905]
 gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905]
          Length = 1443

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 145/478 (30%), Gaps = 53/478 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   A D   + A V++ +  + I+  E F       +      + +TGI
Sbjct: 427 TYVVFDVETTGLSTAYDTIIELAAVKI-KDGQVIDKYESFA---NPHHPLSATTIELTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         VE +  +  H F       I+  +N  FD  +    + +   +       
Sbjct: 483 TDDMVRHAPEVE-QVIKEFHAFIGDG---IVVAHNASFDIGFLYTGYKKFGLEG------ 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +   D L++ R +Y                 + +L  L     IE    H A  D  A
Sbjct: 533 TTHPVIDTLELARLLY-------------PTMKNHRLNTLCKKFNIELTQHHRAIYDTEA 579

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+  + +   +L    +D  NK+ +      +   P+         +          
Sbjct: 580 TGYLLLQLLKDADELVIKYHDDFNKH-IGGGDAYKKGRPMHCTILAVDNAGLKNLFKIVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H +    V     +   +  + L               +        +         +
Sbjct: 639 HAHTKTFYRVPRVTRAVLEQYREGLLVGSGCSNGELFETMMNKSPEEAEQVAKFYDYIEV 698

Query: 304 MPIDYCKKEHFE---RWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            P             R     +  +    L++    L     A  N  Y   +  +  Q+
Sbjct: 699 QPKAVYAPLIERNVVRDEWTLEDIIR--KLVKLGKKLDKPVVATGNVHYLDPTDAMFRQI 756

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSE 414
             G     +     +        L  ++   +D  L E  F     A+         +++
Sbjct: 757 LVGSQGGANILNRSK--------LPEVHFRTTDEMLKEFDFLGPDLAKEVVVTNAQKVAD 808

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                 ++  K  L   +IE   +++ +L+ E      G+E  E +   + + L+ ++
Sbjct: 809 SIGD--VKPIKDDLYTPKIEGSDDEVTNLTYEMAHHIYGEELPEIVKARIEKELKSIL 864


>gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius
           CECT 5713]
          Length = 1444

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 143/475 (30%), Gaps = 46/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D+  + A V++  +   I++ E F       +      + +T I
Sbjct: 425 TYVIFDTETTGLSAQYDKVIELAAVKM-EKGNVIDTFEEF---IDPGHPLSQTTINLTSI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E  R   +F      CII  +N  FD  +    + R+  +  +  W 
Sbjct: 481 TDDMVRGS-KSEEEVFRLFKEF---CKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R +Y                  F+L  LA    I+  + H A  D  A
Sbjct: 536 -----IDTLPLARYLY-------------PEMKGFRLNTLAKKLNIKLEHHHRAIYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  + + + +   +     +D  NK+                +         N   +   
Sbjct: 578 TGFIYYAMLKDAEEKQILYHDDFNKHIGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSE 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           +   +Y   V     S   +  + L               ++    +  ++        +
Sbjct: 638 SMV-KYFYRVPRVPRSILEKYREGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYDYLEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P    +    +    D+     NL  +                                
Sbjct: 697 QPKPLYEPLLEQELVKDND----NLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYR 752

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSEKEK 417
                 +   + + R   ++L  ++   +D  L E  F     A+      P+ L ++  
Sbjct: 753 KILIHSQAGANPLNRL--KKLPDVHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEIS 810

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  +   K  L   ++E  +  +  L    +  + GD   E +   L + L+ VI
Sbjct: 811 E--ITPVKDKLYTPKMEGAEQDIHDLTMNRAHAWYGDTLPEIVQKRLDKELKSVI 863


>gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
           15579]
 gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
           15579]
          Length = 1442

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/482 (13%), Positives = 136/482 (28%), Gaps = 60/482 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++  + + ++    F      +     +   +T 
Sbjct: 426 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPERSIPEKITELTS 481

Query: 63  ITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           IT            E   +I  +F       ++  +N  FD  +          +     
Sbjct: 482 ITDDMVDDK-----EAIDKILPRFIEFIGDSVVVAHNAAFDVSFINKNCKDLKIEF---- 532

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               NS  D + + R                     +KL  +A   GI   N H A  D 
Sbjct: 533 ---KNSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDA 576

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT  ++    E   +         NK  L  +   +  T  + +         N   + 
Sbjct: 577 KATADILLKSFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILAKNAVGLKNLYKLV 636

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y         S      + L      +      + LKG     +K +      
Sbjct: 637 SK-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI----- 690

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
                         +   +++  ++N ++  ++       K      + +        ++
Sbjct: 691 ------DFYDYLEIQPLGNNEFLVKNGSVKDEEELKEINKKICELGEFYNKPVVATCDVH 744

Query: 362 DGFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----S 413
                    + +         +  +    L    ++  L E  F Y        +    +
Sbjct: 745 FLDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNT 800

Query: 414 EKEKQDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
            K      E     +     +IE  +  ++++    + +  GD   E +   L + L  +
Sbjct: 801 NKIADMIDEIKPIPEETFPPKIEGAEEDIRNMTIKKAHDIYGDPLPEIVEKRLTKELNSI 860

Query: 468 IP 469
           I 
Sbjct: 861 IN 862


>gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           pumilus ATCC 7061]
 gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           pumilus ATCC 7061]
          Length = 1437

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/475 (13%), Positives = 135/475 (28%), Gaps = 46/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++ +  E I+  E F       +      + +TGI
Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKI-KGGEIIDRFEAFA---NPHHPLSATTIELTGI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +    +  F       I+  +N  FD  +    + R        +  
Sbjct: 476 TDDMVKDAP----DVVDVVRDFKEWIGQDILVAHNASFDMGFLNTAYKRLL-----KTDK 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L++ R +Y                 + +L  L     IE    H A  D  A
Sbjct: 527 ASNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDAEA 573

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+  + +      +  Y  +    + +    Q   P   +      +          
Sbjct: 574 TGYLMLKMLK-DAAEKDIAYHDQLNENMGQSNAYQRSRPYHAILIAQNETGLKNLFKLVS 632

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S   +  + L       +       ++                 +
Sbjct: 633 LSHIHYFYRVPRIPRSQLEKYREGLIIGSACDKGEVFEGMMQKSPDEVEDIAAFYDYLEV 692

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P +  +         D +   E   ++     L ++                + ++Y  
Sbjct: 693 HPPEVYQHLLQLELVRDERALKE---IITNIVKLGEKLNKPVVATGNVHYLHQEDKIYRK 749

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL------SEKEK 417
                              +L  ++   +D  L    F +        +         E 
Sbjct: 750 ILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEEKAKEIVVTNTKKVSEM 803

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
            + ++  K  L   +IE    +++ +S +      GD+  + + + + + L+ +I
Sbjct: 804 VESIKPIKDDLYTPKIEGADEEVREMSYQMARSIYGDDLPKIVEDRIEKELKSII 858


>gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
 gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
          Length = 1468

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 144/478 (30%), Gaps = 53/478 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   A D   + A V++ +    I+  E F       +      + +TGI
Sbjct: 452 TYVVFDVETTGLSTAYDTIIELAAVKI-KDGHVIDKYESFA---NPHHPLSATTIELTGI 507

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         VE +  +  H F       I+  +N  FD  +    + +   +       
Sbjct: 508 TDDMVRHAPEVE-QVIKEFHAFIGDG---IVVAHNASFDIGFLYTGYKKFGLEG------ 557

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +   D L++ R +Y                 + +L  L     IE    H A  D  A
Sbjct: 558 TTHPVIDTLELARLLY-------------PTMKNHRLNTLCKKFNIELTQHHRAIYDTEA 604

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+  + +   +L    +D  NK+ +      +   P+         +          
Sbjct: 605 TGYLLLQLLKDADELVIKYHDDFNKH-IGGGDAYKKGRPMHCTILAVDNAGLKNLFKIVS 663

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H +    V     +   +  + L               +        +         +
Sbjct: 664 HSHTKTFYRVPRVTRAVLEQYREGLLVGSGCSNGELFETMMNKSPEEAEQVAKFYDYIEV 723

Query: 304 MPIDYCKKEHFE---RWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            P             R     +  +    L++    L     A  N  Y   +  +  Q+
Sbjct: 724 QPKAVYAPLIERNVVRDEWTLEDIIR--KLVKLGKKLDKPVVATGNVHYLDPTDAMFRQI 781

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSE 414
             G     +     +        L  ++   +D  L E  F     A+         +++
Sbjct: 782 LVGSQGGANILNRSK--------LPEVHFRTTDEMLKEFDFLGPDLAKEVVVTNAQKVAD 833

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                 ++  K  L   +IE   +++ +L+ E      G+E  E +   + + L+ ++
Sbjct: 834 SIGD--VKPIKDDLYTPKIEGSDDEVTNLTYEMAHHIYGEELPEIVKARIEKELKSIL 889


>gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
 gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
          Length = 1395

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 58/476 (12%), Positives = 133/476 (27%), Gaps = 47/476 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   + + V++  +   IES E F       +      + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYNSIIELSAVKM-HKGNIIESFEQF---IDPGHPLSQTTINLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E      +F       I+  +N  FD  +      ++          
Sbjct: 481 TDEMVQGS-KSEEEVLTLFKEF---AGDSILVAHNASFDMGFLNTSNAKHNIPDAEN--- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R ++                 S +L  LA   G+     H A  D   
Sbjct: 534 ---PVIDTLELSRFLH-------------PQFKSHRLNTLAKKYGVNLEQHHRAIFDAET 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++  +  +  +  +      +    +   P          +          
Sbjct: 578 TGHLCWVFLKEAREEHDIHFQDQLNEHTGEGDAYKRARPFHATIIATTQTGLKNLFKLIS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           +    Y         S  +++ + L       +       ++        +        +
Sbjct: 638 SSMVDYFYRTARLPRSELIKLREGLIIGTACSQGEVFEAMMQKGFDEAKNKAKFYDYIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP +       +    D     E   ++R    + +               + +  +Y  
Sbjct: 698 MPKEVYAPLIEQELVKDESDLEE---IIRNLVKIGEDLNIPVVATGNVHYLNPEDSIYRK 754

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
              +               +L  ++   +   L    F          +  K     ++ 
Sbjct: 755 ILINSQGGANPLNRS----ELPEVHFRTTTEMLETFSF--LGEETAQQIVVKNTNKIVDM 808

Query: 424 -------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   +IE  +++++ L    +    G+   + +   + + L  +I
Sbjct: 809 VDDAITPIKTDLYTPKIEGSEDEIRQLSYDEAHRLYGNPLPDIIEKRIEKELNSII 864


>gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68]
          Length = 1463

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 60/450 (13%), Positives = 114/450 (25%), Gaps = 40/450 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAVNNALIQIAASKM-HKGNIIAEFDEF---IDPGHPLSQFTTDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  R    F       ++  +N  FD  +    + R           
Sbjct: 480 TDEHVRGS-KPLEQVLREFQDF---CQDSVMVAHNATFDVGFMNVNYERAGLPII----- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 -SQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +   +L      +          +              
Sbjct: 577 TGRLLFIFLKDALEKHNLTNLNQLNTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L      +      D L   +   +K         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLNAHREGLILGTACQEGEVFDDLLSKGIDEAVKTAAYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357
           MP         +    D     E +  L +         L        +       + + 
Sbjct: 697 MPPALYAPMIAKEQFKDKAEIEETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIV 756

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEK 415
             L  G   +      +      P  L   +   +   L E  F     AR    T    
Sbjct: 757 RALGQGAPINWTIGNGE---NAQPAPLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNA 813

Query: 416 EKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443
               +   +  K  L    IE+ +  +  L
Sbjct: 814 MLDRFEDVQVVKTDLYTPYIEKAEETVAEL 843


>gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61]
 gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1444

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 64/477 (13%), Positives = 137/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     +   + A V+V +  E I+    F       +      + +TG
Sbjct: 427 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMSFA---NPGHPLSVTTMELTG 482

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +        +      + +F        +  +N  FD  +      R          
Sbjct: 483 ITDEMVKDAPKPD----EVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIAN-- 536

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 537 ----PVIDTLELARFLY-------------PDLKNHRLNTLCKKFDIELTQHHRAIYDAE 579

Query: 183 AT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT   L+ L++E + +   +  +  ++        +     +  ++      ++   L++
Sbjct: 580 ATGHLLMRLLKEAEERGILFHDELNSRTHSEASYRLARPFHVTLLAQNETGLKNLFKLVS 639

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               H +Y   V     S  ++    L       +     + ++                
Sbjct: 640 --LSHIQYFHRVPRIPRSVLVKHRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFYDFL 697

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            + P D  K      +  D +       ++R    L ++              + + ++Y
Sbjct: 698 EVHPPDVYKPLIEMDYVKDEEMIK---NIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 754

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                                +L  +    ++  L    F          +     Q   
Sbjct: 755 RKILIHSQGGANPLNRH----ELPDVYFRTTNEMLDCFSF--LGPEKAKEIVVDNTQKIA 808

Query: 422 EH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                    K  L   RIE    +++ +    + E  GD   + +   L + L+ +I
Sbjct: 809 SLIGDVKPIKDELYTPRIEGADEEIREMSYRRAKEIYGDPLPKLVEERLEKELKSII 865


>gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
 gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
          Length = 1442

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 76/482 (15%), Positives = 147/482 (30%), Gaps = 59/482 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + F+++D ET G     D+  +   V++ +  E I++   F            +   +TG
Sbjct: 427 DTFIVFDIETTGFSAKNDKIIEIGAVKI-KGREVIDTFSEF---VYPKCRIPYKITELTG 482

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       +E      + +F    + C +  +N  FD  + +        +      
Sbjct: 483 ITDEIVQDADPIEV----VLPKFIEFIDGCAVVAHNAAFDTGFIKKNCNDLGLEFNST-- 536

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D + + R +Y                   KL  +A   G+   N H A  D  
Sbjct: 537 -----IVDTVPLARFLY-------------PELKRVKLNLVAKHLGVSLENHHRAVDDAK 578

Query: 183 ATLALVWL-IREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  +  + I++   +L     +  NK  L K+   +  T  + +     A   N   + 
Sbjct: 579 ATAEIFLISIKKMIEELNMNSLNDLNKEFLEKMDIKKEKTYHIIIFAKTQAGMKNLYKLV 638

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE-VHLNKC 300
             A H            S  M +   L      +        L G     +KE +     
Sbjct: 639 SEA-HIDNFHKSPRVRKSKLMEMRDGLIIGSACEAGEVYRAVLDGKSDEELKEIMGFYDY 697

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + PI   +    +    D       N  +      L     A  +  +     +V  +
Sbjct: 698 LEIQPIGNNEYLINKGNVKDEDELRSLNTKIYNLGKELNKPVVATGDVHFLDPQDEVFRK 757

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN--------FPHT 411
           +                  +  E    L L  ++  L E    Y  ++         P  
Sbjct: 758 IIMAGQGF-----------SDSENQPPLYLKTTEEMLREFS--YLGQDGAKEVVIINPGE 804

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467
           +++    D L+         +IE   ++++ ++ E      GD   E +   L + L  +
Sbjct: 805 IADSI--DVLKPIPDETYPPKIEGADDEIREMTMEKVHSIYGDPLPEIVQKRLDKELNSI 862

Query: 468 IP 469
           I 
Sbjct: 863 IN 864


>gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426]
 gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus
           kaustophilus HTA426]
          Length = 1444

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 64/477 (13%), Positives = 137/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     +   + A V+V +  E I+    F       +      + +TG
Sbjct: 427 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMSFA---NPGHPLSVTTMELTG 482

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +        +      + +F        +  +N  FD  +      R          
Sbjct: 483 ITDEMVKDAPKPD----EVLARFVDWAGDATLVAHNASFDIGFLNTGLARMGRGKIAN-- 536

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 537 ----PVIDTLELARFLY-------------PDLKNHRLNTLCKKFDIELTQHHRAIYDAE 579

Query: 183 AT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT   L+ L++E + +   +  +  ++        +     +  ++      ++   L++
Sbjct: 580 ATGHLLMRLLKEAEERGILFHDELNSRTHSEASYRLARPFHVTLLAQNETGLKNLFKLVS 639

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               H +Y   V     S  ++    L       +     + ++                
Sbjct: 640 --LSHIQYFHRVPRIPRSVLVKHRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFYDFL 697

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            + P D  K      +  D +       ++R    L ++              + + ++Y
Sbjct: 698 EVHPPDVYKPLIEMDYVKDEEMIK---NIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 754

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                                +L  +    ++  L    F          +     Q   
Sbjct: 755 RKILIHSQGGANPLNRH----ELPDVYFRTTNEMLDCFSF--LGPEKAKEIVVDNTQKIA 808

Query: 422 EH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                    K  L   RIE    +++ +    + E  GD   + +   L + L+ +I
Sbjct: 809 SLIGDVKPIKDELYTPRIEGADEEIREMSYRRAKEIYGDPLPKLVEERLEKELKSII 865


>gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
 gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
          Length = 1448

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 67/479 (13%), Positives = 136/479 (28%), Gaps = 53/479 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     ++  + A V++ +  EKI   E F       +      + +T I
Sbjct: 427 TYVVFDTETTGLSAQYNKVIELAAVKM-KDGEKIGEFEEF---IDPGHPLSQTTINLTHI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E  +   +F      CII  +N  FD  +    + R+     +  W 
Sbjct: 483 TDAMVRGS-KTEEEVFKLFREF---CKGCIIVGHNATFDVDFMNTGYLRHGMPEIKEPW- 537

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R +Y                  F L  LA    ++  + H A  D  A
Sbjct: 538 -----VDTLPLARILY-------------SDMKRFTLDTLAKRLKVDLEHHHRAIYDAEA 579

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  + + +     + F+ LY       + +    +   P   +                 
Sbjct: 580 TGYIFYKMLADAREQFDILYHDDFNKHMVQPDTYKQQHPFHAIVLAKTQDGLKNLFKLAS 639

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
                +   V     S   +  + L               ++        +        +
Sbjct: 640 DSMVNHFYRVARVPRSVLEKYREGLLVGSGCADGEVFTAMMQKGYETAKAKAKNYDYLEI 699

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D +   + +  +++    L     A  +  + +    +  ++  
Sbjct: 700 QPKALYAPLLERELVKDEEELEDIIKNMVKLAEELDKPIVASGDVHFMNKEDAIYRKILI 759

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE---KEKQD 419
                 +     +        L   +   +D  L E  F       P    +    +   
Sbjct: 760 HSQGGANPLNRLK-------NLPDAHFRTTDEMLDEFAFL-----GPELAKKVVVDDPNK 807

Query: 420 WLEHR------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                      K  L   ++   ++ +++L    + E  GD   E +   L + L+ VI
Sbjct: 808 VAAMCDEITPVKDKLYTPKMPGAEDDIRNLTMNKAHELYGDPLPEIVQARLDKELKSVI 866


>gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis]
          Length = 1437

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 133/476 (27%), Gaps = 46/476 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKV-KGGEIIDKFEAFA---NPHRPLSATIIELTG 474

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            +    I  F       I+  +N  FD  +    + +          
Sbjct: 475 ITDDMLQDAP----DVVDVIRDFRVRIGDDILVAHNASFDMGFLNVAYKKLL-----EVE 525

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 526 KAKNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDTE 572

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +   +     +D  N   + +    Q   P         ++         
Sbjct: 573 ATAYLLLKMLKDAAEKGIQYHDELN-ENMGQSNAYQRSRPYHATLLAVNSTGLKNLFKLV 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H  Y   V     S   +  + L       R       ++                 
Sbjct: 632 SLSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P +  +         D K   E   ++   T L ++              + + ++Y 
Sbjct: 692 VQPPEVYRHLLELELVRDEKALKE---IIANITKLGEKLNKPVVATGNVHYLNDEDKIYR 748

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420
                               +L  ++   +D  L    F +        +     Q    
Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLE--AFSFLGEEKAKEIVVTNTQKVAS 802

Query: 421 ----LEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
               ++  K  L   +IE    +++  S +      G+E  E +   + + L+ +I
Sbjct: 803 LVDDIKPIKDDLYTPKIEGADEEIRESSYQRARSIYGEELPEIVEARIEKELKSII 858


>gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1430

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/477 (15%), Positives = 147/477 (30%), Gaps = 50/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     ++  + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 409 TYVVFDVETTGLSAVYNKIIELAGVKI-KDGEIIDRFEAFA---DPKHALSATTIELTGI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T       G  + E   +  +F       I+  +N  FD  +         ++       
Sbjct: 465 TDDMV--QGQPDPEVITK--RFVDWCGDSILVAHNASFDMGFLEATLRSGGHEP------ 514

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +     D L++ R                    + +L  LA    IE    H A  D  A
Sbjct: 515 DDYPVIDTLELART-------------LMPTLKNHRLNTLAKRFDIELTQHHRAIYDAEA 561

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+  + +   ++FE         ++    D+  + P                L   +
Sbjct: 562 TAYLLMKLLDLAKQMFEMTTHRSLNAKVGS--DVSKIRPFHATIYAKNKKPGLRHLYELI 619

Query: 244 -AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H  Y   +     S  ++  + L               L        K +       
Sbjct: 620 SLSHIDYLYRMARMPRSELVKRREGLLIGSACDNGEIFDAALNKSDDELEKMMSFYDFIE 679

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P         +    +     E +  ++R          A  N  Y   S     ++ 
Sbjct: 680 IHPPALYHHLIDKEIVANELELREIIKRIIRVAEKAELPVCATGNVHYLDRSDRSYREIL 739

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTLSEK 415
                  +     +       +L   +   +   + E  F     AR      P+ ++++
Sbjct: 740 IRTQGGANFINTRK-------ELPHAHFRTTKEMMEEFKFLGDDLAREIVITNPNAIADQ 792

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
            +   ++     L   +IE   ++++++S +      GDE  E +   L + L+ +I
Sbjct: 793 IES--IQIIPDDLYTPKIEGADDEVRNMSYDMARSIYGDELPEIVEARLEKELKSII 847


>gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13]
          Length = 1437

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/478 (13%), Positives = 142/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F       +      + +TG
Sbjct: 420 ETYVVFDVETTGLSAMYDTIIELAAVKV-KGGEIIDRFESFA---NPHHPLSATTINLTG 475

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E    + QF       I+  +N  FD  +    F R          
Sbjct: 476 ITDDMVQNAP----EVGDVLKQFSEWMQDDILVAHNASFDMGFLNIGFQRIGL------- 524

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             G ++  ++D +       P             + +L  L     IE    H A  D  
Sbjct: 525 --GKAKNPVIDTLELGRLLFPSL----------KNHRLNTLCKKFDIELTQHHRAIYDAE 572

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K   +  +    +           + +  ++      ++   +++
Sbjct: 573 ATGYLLVKMLKDAFEKGITFHDELNEHSGTTDAYKRARPSHVTLLAVNEIGLKNIFKIVS 632

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               H  Y   V     S   ++ + +       +       ++                
Sbjct: 633 --ISHMNYFFRVPRIPRSQLQKLREGIIVGTACDKGEVFEGMMQKSPDEVEGIAEFYDYI 690

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            + P              D K   E +  +++    L     A  N  Y   +  +  ++
Sbjct: 691 EVQPPSNYAHLLELELVRDEKALKEIITNIVKLGEKLEKPVVATGNVHYLKETDKIHREI 750

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +  +     +        L  ++   +D  L    F +        +     Q  
Sbjct: 751 LVRSQSGANPLNRHQ--------LPDVHFKTTDEMLA--AFSFLGEEKAKEIVVTNTQKV 800

Query: 421 ------LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                 ++  K  L   +IE    +++ +    +    GD+  E +   + + L+ +I
Sbjct: 801 AGMIEEIKPIKDDLYTPKIEGADEEIREMSYSRARSIYGDDLPEIVEKRIEKELKSII 858


>gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1]
 gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Anoxybacillus flavithermus WK1]
          Length = 1430

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 135/478 (28%), Gaps = 47/478 (9%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + FV++D ET G     D   + A V+V +  E I+  E F       +      + +
Sbjct: 411 MDDTFVVFDVETTGLSAVYDTIIELAAVKV-KNGEIIDRFESFA---NPHHPLSATTIEL 466

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT            +    + +F+   + C++  +N  FD  +    F +        
Sbjct: 467 TKITDDMLKDAP----DVEEVLEKFYHWIDDCVLVAHNATFDIGFLNAGFKK------IN 516

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D L++ R +Y                 + +L  L     IE    H A  D
Sbjct: 517 RGKVTNPVIDTLELARYLY-------------PELKNHRLNTLCKKFNIELTQHHRAIYD 563

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  L+  + ++  +      D  N    ++    Q   P      +           
Sbjct: 564 AEATGYLLIHLLKELDEKGIQYMDQLN-EASKEQGAFQRSRPFHATLLVQNEVGLKNLFK 622

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
                H  Y   V     S   +  + +       +       ++  V            
Sbjct: 623 LVSFSHVNYFYRVPRIPRSVLQQHREGILVGSGCDKGELFEAMMQKGVEEAEAIASFYDF 682

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             + P +         +  D     E   ++     L DR              + + ++
Sbjct: 683 LEVHPPEVYAPLIEMEYVRDEAALKE---IITNIVQLGDRLGIPVVATGNVHYINQEDKI 739

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y                     +L  ++   ++  L    F          +     +  
Sbjct: 740 YRKILIHSQSGGNPLNRH----ELPNVHFRTTNEMLESFSF--LGEQKAKEIVVTNTKKI 793

Query: 421 LEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
            +        K  L   +IE    +++ +S E      GD   + +   L + L+ +I
Sbjct: 794 ADLIGEVKPIKDELYTPKIEGADEEIRRMSYERAKSIYGDPLPDIVEKRLEKELKSII 851


>gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
 gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
          Length = 1444

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/476 (13%), Positives = 138/476 (28%), Gaps = 51/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++ +    I+  E F       +      + +TGI
Sbjct: 426 TYVVFDVETTGLSAIYDSIIELAAVKM-KNGVVIDKFEEF---IDPGHPLSATTIQLTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +  H+F      CI+  +N  FD  +    +     +       
Sbjct: 482 TDDMVRGS-KSVEQVLKEFHEF---SKDCILVAHNASFDMGFLNTGYENVGIE------R 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R ++                 S +L  LA    +     H A  D   
Sbjct: 532 TEQPVIDTLELSRMLH-------------PQLKSHRLNTLAKRYNVALEQHHRAVYDSET 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L  +  ++     + LY       +      +N  P          +          
Sbjct: 579 TGYLCHIFLKEAANDHQLLYHDELNTNIHPEEVFKNGRPFHATIFAKDQAGLKELFKVVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y   V     S                        ++       ++        +
Sbjct: 639 QSNIQYYYRVPRILRSMLSSRRDSFLLGSGCSEGEVFEAMMQKGYNEAKEKAKFYDYIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    +     E +  L R    L     A  N  Y +    +  ++  
Sbjct: 699 MPKAIYRPLIKKELIRNEHHLEEIIQNLVRLGDELGKPVVATGNVHYLNPEDKIYREILL 758

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS------EKE 416
               +             P++    +L  +D  L E  F        + +         E
Sbjct: 759 TSVNNGV-----------PQEYPDAHLRTTDEMLKEFAF--LGEEKAYEVVVTNSNWVSE 805

Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           + + +   K  L   +IE  ++++  L    + E+ G+   + + + + + L+ +I
Sbjct: 806 QLEEITPVKDDLYTPKIEGAEDEITKLSYDKAHEWYGNPLPKIVDDRIKKELKSII 861


>gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra]
 gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum B1 str. Okra]
          Length = 1432

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/482 (12%), Positives = 133/482 (27%), Gaps = 60/482 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++  + + ++    F      +     +   +T 
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPERSIPDKITELTS 471

Query: 63  ITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           IT            E   +I  +F       ++  +N  FD  +          +     
Sbjct: 472 ITDDMVDDK-----EAIDKILPRFIEFIGDSVVVAHNAAFDASFINKNCKDLKIEF---- 522

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               NS  D + + R                     +KL  +A   GI   N H A  D 
Sbjct: 523 ---KNSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDA 566

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT  ++    E   +         NK  L  +   +  T  + +         N   + 
Sbjct: 567 KATADILLKSFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILAKNAVGLKNLYKLV 626

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y         S      + L      +      + LKG     +K +      
Sbjct: 627 SK-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI----- 680

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
                         +   +++  ++N ++  ++       K      + +        ++
Sbjct: 681 ------NFYDYLEIQPLGNNEFLVKNGSVKDEKELQEINKKICELGEFYNKPVVATCDVH 734

Query: 362 DGFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
                    + +         +  +    L    ++  L E  F Y        +     
Sbjct: 735 FLDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIHNT 790

Query: 418 QDWLEHRK------KMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467
               +         +     +IE  +  ++ ++ E      GD   E +   L + L  +
Sbjct: 791 NKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHAIYGDPLPEIVEKRLTKELNSI 850

Query: 468 IP 469
           I 
Sbjct: 851 IN 852


>gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Bf]
 gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Bf]
          Length = 1432

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/481 (12%), Positives = 136/481 (28%), Gaps = 58/481 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++  + + ++    F        +   +   +T 
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPKRIIPDKITELTS 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++    + + +F       ++  +N  FD  +          +      
Sbjct: 472 ITDDMVQDKETID----KILPRFIDFIGDSVVVAHNADFDVSFINKNCKDLKIEF----- 522

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              NS  D + + R                     +KL  +A   GI   N H A  D  
Sbjct: 523 --ENSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDAK 567

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  ++    E   +         NK  L  +   +  T  + +         N   +  
Sbjct: 568 ATADILLKSFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILVKNAVGLKNLYKLVS 627

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y         S      + L      +      + LKG     +K +       
Sbjct: 628 K-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI------ 680

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
                        +   +++  ++N ++  ++       K      + +        ++ 
Sbjct: 681 -----DFYDYLEIQPLGNNEFLVKNGSVKDEKELEEINKKICELGEFYNKPVVATCDVHF 735

Query: 363 GFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SE 414
                   + +         +  +    L    ++  L E  F Y        +    + 
Sbjct: 736 LDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNTN 791

Query: 415 KEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
           K      E     +     +IE  +  ++ ++ E      GD   E +   L + L  +I
Sbjct: 792 KIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHAIYGDPLPEIVEKRLTKELNSII 851

Query: 469 P 469
            
Sbjct: 852 N 852


>gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Ba4 str. 657]
 gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Ba4 str. 657]
          Length = 1432

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/481 (12%), Positives = 136/481 (28%), Gaps = 58/481 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++  + + ++    F        +   +   +T 
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPKRIIPDKITELTS 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++    + + +F       ++  +N  FD  +          +      
Sbjct: 472 ITDDMVQDKETID----KILPRFIDFIGDSVVVAHNADFDVSFINKNCKDLKIEF----- 522

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              NS  D + + R                     +KL  +A   GI   N H A  D  
Sbjct: 523 --ENSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDAK 567

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  ++    E   +         NK  L  +   +  T  + +         N   +  
Sbjct: 568 ATADILLKSFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILVKNAVGLKNLYKLVS 627

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y         S      + L      +      + LKG     +K +       
Sbjct: 628 K-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI------ 680

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
                        +   +++  ++N ++  ++       K      + +        ++ 
Sbjct: 681 -----DFYDYLEIQPLGNNEFLVKNGSVKDEKELEEINKKICELGEFYNKPVVATCDVHF 735

Query: 363 GFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SE 414
                   + +         +  +    L    ++  L E  F Y        +    + 
Sbjct: 736 LDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNTN 791

Query: 415 KEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
           K      E     +     +IE  +  ++ ++ E      GD   E +   L + L  +I
Sbjct: 792 KIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHAIYGDPLPEIVEKRLTKELNSII 851

Query: 469 P 469
            
Sbjct: 852 N 852


>gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1444

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/477 (13%), Positives = 138/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     +   + A V+V +  E I+   +F       +      + +TG
Sbjct: 427 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMLFA---NPGHPLSVTTMELTG 482

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +        +      + +F        +  +N  FD  +      R          
Sbjct: 483 ITDEMVKDAPKPD----EVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIAN-- 536

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 537 ----PVIDTLELARFLY-------------PDLKNHRLNTLCKKFDIELTQHHRAIYDAE 579

Query: 183 AT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT   L+ L++E + +   +  +  ++        +     +  ++      ++   L++
Sbjct: 580 ATGHLLMRLLKEAEERGILFHDELNSRTHSEASYRLARPFHVTLLAQNETGLKNLFKLVS 639

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               H +Y   V     S  ++    L       +     + ++                
Sbjct: 640 --LSHIQYFHRVPRIPRSVLVKHRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFYDFL 697

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            + P D  K      +  D +       ++R    L ++              + + ++Y
Sbjct: 698 EVHPPDVYKPLIEMDYVKDEEMIK---NIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 754

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                                +L  +    ++  L    F          +     Q   
Sbjct: 755 RKILIHSQGGANPLNRH----ELPDVYFRTTNEMLDCFSF--LGPEKAKEIVVDNTQKIA 808

Query: 422 EH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                    K  L   RIE    +++ +    + E  GD   + +   L + L+ +I
Sbjct: 809 SLIGDVKPIKDELYTPRIEGADEEIREMSYRRAKEIYGDPLPKLVEERLEKELKSII 865


>gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B]
          Length = 1439

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/480 (13%), Positives = 148/480 (30%), Gaps = 56/480 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     DR  +   V+V +  E I+   VF            E   +TG
Sbjct: 424 DIFVVFDIETTGFSSQNDRIIEIGAVKV-KNGEIIDEFSVF---VNPQKDIPLEITELTG 479

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I          ++    +  + F    +  I+  +N  FD  + +  +  N  +      
Sbjct: 480 IDNYMVKDAKTIDI-VIKEFYDFV---DGSILVAHNAAFDTSFIKKNYLDNDLEFNY--- 532

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D + + + +Y                  +KL  +    GI  +N H A  D  
Sbjct: 533 ----PIMDTIPLCKYLY-------------PALNKYKLNVICKYLGITLLNHHRAVDDAK 575

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKN-QLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  +    +E+            NK  +  + I    M  ++ +S      ++   L++
Sbjct: 576 ATAMVFLKAQEELRSREIIKLSDLNKEYKQTQDIKKLPMNHIILLSKNQVGIKNLYKLVS 635

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299
             +    ++   +  +L  + R    + S   A  L+ +    +    +   I      +
Sbjct: 636 FSSLDNFHRKPRLPRSLIEEYREGIIIGSACEAGELYKNILQGQSDDELEPIINFYDYLE 695

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              +    +  ++   +   + +     +  L Q                  ++ D+   
Sbjct: 696 IQPICNNFFLIEKGNVKDENELREINRRIYNLGQ-----------KYNKPVVATGDIHFL 744

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL---FFRYRAR---NFPHTLS 413
                              +  E    L    ++  L E      +         P+ + 
Sbjct: 745 DERDGVFRKILLAGQGF--SDAENQPPLYFKTTEEMLREFSYLGEKACYEVVIKNPNDI- 801

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
             E  + ++         +IE  +++++ ++ +      GD   E +   L + L  +I 
Sbjct: 802 -AESVETVKPIPDETYPPKIEGAEDEIREMTMKKVHSIYGDPLPEVVQKRLDKELNSIIN 860


>gi|302874658|ref|YP_003843291.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
 gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
          Length = 1443

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/480 (13%), Positives = 148/480 (30%), Gaps = 56/480 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     DR  +   V+V +  E I+   VF            E   +TG
Sbjct: 428 DIFVVFDIETTGFSSQNDRIIEIGAVKV-KNGEIIDEFSVF---VNPQKDIPLEITELTG 483

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I          ++    +  + F    +  I+  +N  FD  + +  +  N  +      
Sbjct: 484 IDNYMVKDAKTIDI-VIKEFYDFV---DGSILVAHNAAFDTSFIKKNYLDNDLEFNY--- 536

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D + + + +Y                  +KL  +    GI  +N H A  D  
Sbjct: 537 ----PIMDTIPLCKYLY-------------PALNKYKLNVICKYLGITLLNHHRAVDDAK 579

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKN-QLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  +    +E+            NK  +  + I    M  ++ +S      ++   L++
Sbjct: 580 ATAMVFLKAQEELRSREIIKLSDLNKEYKQTQDIKKLPMNHIILLSKNQVGIKNLYKLVS 639

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299
             +    ++   +  +L  + R    + S   A  L+ +    +    +   I      +
Sbjct: 640 FSSLDNFHRKPRLPRSLIEEYREGIIIGSACEAGELYKNILQGQSDDELEPIINFYDYLE 699

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              +    +  ++   +   + +     +  L Q                  ++ D+   
Sbjct: 700 IQPICNNFFLIEKGNVKDENELREINRRIYNLGQ-----------KYNKPVVATGDIHFL 748

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL---FFRYRAR---NFPHTLS 413
                              +  E    L    ++  L E      +         P+ + 
Sbjct: 749 DERDGVFRKILLAGQGF--SDAENQPPLYFKTTEEMLREFSYLGEKACYEVVIKNPNDI- 805

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
             E  + ++         +IE  +++++ ++ +      GD   E +   L + L  +I 
Sbjct: 806 -AESVETVKPIPDETYPPKIEGAEDEIREMTMKKVHSIYGDPLPEVVQKRLDKELNSIIN 864


>gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 1439

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/479 (13%), Positives = 132/479 (27%), Gaps = 60/479 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G  +   +  + AGV++ R  ++I+    F                +T IT
Sbjct: 423 YVVFDIETTGLSIINCKIIELAGVKM-RGGQEIDRFSTF---INPHEKIPYHIQQLTNIT 478

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +       E   ++ +F       ++  +N RFD  + +                 
Sbjct: 479 DEMVVDAP----ELEPKLREFVEFIGDAVLVAHNARFDIGFIQANCKAIGLPEV------ 528

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                 + +L  L+    I   N H A  D  A 
Sbjct: 529 MNPVLDTLELARFLH-------------PSMKNHRLNTLSARYKINLENHHRAIDDSIAL 575

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +++ + +   +         N      L +     P         A            
Sbjct: 576 GGVLFGLIKDCNERNVTGLHQLNDYVGLDLSNS---RPFHCGIYALNAVGKKNLFKLISL 632

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            H  +   V     S    + + L  +   ++       L                  + 
Sbjct: 633 SHTEHFKRVACIPKSKLTELREGLLIISGCEKGEFFESVLNKTEEEAEDVAQYYDVLEIQ 692

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTL-LRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           P+D+      +          E L   +R    L     A  N  Y +    V   +   
Sbjct: 693 PVDFYMHLVEKGLVGSRAEIEEALRRVVRIGKKLDKMVIATGNVHYLNPRDKVFRDITIQ 752

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR-------YRARNFPHTLSEKE 416
                      R            +   +D  L E  F           RN     + + 
Sbjct: 753 GITGFSPLKGMR--------KPDAHFRTTDEMLREFAFLGEEKAFEVVVRN-----TNEL 799

Query: 417 KQDWLEH--RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVIP 469
              + +       L    IE  + +++      +    GDE  + ++  L    + ++P
Sbjct: 800 ADRFEKFDMFPSKLFTPIIEGAEEEIRATCYDTAKRLYGDEVPDVIVQRLE---KELVP 855


>gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2]
 gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 1442

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/477 (13%), Positives = 138/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     +   + A V+V +  E I+    F       +      + +TG
Sbjct: 425 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMSFA---NPHHPLSVTTMELTG 480

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          +    + +F        +  +N  FD  +      +          
Sbjct: 481 ITDEMVKDAP----DVEEVLRRFIDWVGDSTLAAHNASFDIGFLNAGLAKMGLGKVIN-- 534

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 535 ----PVIDTLELARFLY-------------PDLKNHRLNTLCKKFDIELTQHHRAIYDAE 577

Query: 183 AT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT   L+ L++E + +   Y  +  ++        +     +  ++      ++   L++
Sbjct: 578 ATGHLLMRLLKEAEERGILYHDELNSRTHSEASYRLSRPFHVTLLAQNETGLKNLFKLVS 637

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               H +Y   V     S  ++    L       +     + ++       +        
Sbjct: 638 --LSHVQYFHRVPRIPRSVLVKHRDGLLVGSGCDKGELFDNLIQKAPEEVEEIARFYDFL 695

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            + P    K      +  D +       ++R    L ++              + + ++Y
Sbjct: 696 EVHPPAVYKPLIEMDYVKDEEMIK---DIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 752

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                                +L  +    +D  L    F          +     Q   
Sbjct: 753 RKILIHSQGGANPLNRH----ELPDVYFRTTDEMLDCFSF--LGAEKAKEIVVDNTQKIA 806

Query: 422 EH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                    K  L   RIE   ++++ +    + +  GD   + +   L + L+ +I
Sbjct: 807 SLIGEVKPIKDDLYTPRIEGADDEIREMSYRRAKDIYGDPLPKIVEERLEKELKSII 863


>gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A2 str. Kyoto]
 gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A2 str. Kyoto]
          Length = 1432

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/482 (13%), Positives = 134/482 (27%), Gaps = 60/482 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++  + + ++    F      +     +   +T 
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPERSIPDKITELTS 471

Query: 63  ITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           IT            E   +I  +F       ++  +N  FD  +          +     
Sbjct: 472 ITDDMVDDK-----EAIDKILPRFIEFIGNSVVVAHNAAFDVSFINKNCKDLKIEF---- 522

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               NS  D + + R                     +KL  +A   GI   N H A  D 
Sbjct: 523 ---KNSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDA 566

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT  ++    E   +         NK  L  +   +  T  + +         N   + 
Sbjct: 567 KATADILLKAFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILAKNAVGLKNLYKLV 626

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y         S      + L      +      + LKG     +K +      
Sbjct: 627 SK-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI----- 680

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
                         +   +++  + N ++  ++       K      + +        ++
Sbjct: 681 ------DFYDYLEIQPLGNNEFLVRNGSVKDEKELEEINKKICELGEFYNKPVVATCDVH 734

Query: 362 DGFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----S 413
                    + +         +  +    L    ++  L E  F Y        +    +
Sbjct: 735 FLDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNT 790

Query: 414 EKEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467
            K      E     +     +IE  +  ++ ++ E      GD   E +   L + L  +
Sbjct: 791 NKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHAIYGDPLPEIVEKRLTKELNSI 850

Query: 468 IP 469
           I 
Sbjct: 851 IN 852


>gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1434

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/477 (13%), Positives = 138/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     +   + A V+V +  E I+    F       +      + +TG
Sbjct: 417 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMSFA---NPHHPLSVTTMELTG 472

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          +    + +F        +  +N  FD  +      +          
Sbjct: 473 ITDEMVKDAP----DVEEVLRRFIDWVGDSTLAAHNASFDIGFLNAGLAKMGLGKVIN-- 526

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 527 ----PVIDTLELARFLY-------------PDLKNHRLNTLCKKFDIELTQHHRAIYDAE 569

Query: 183 AT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT   L+ L++E + +   Y  +  ++        +     +  ++      ++   L++
Sbjct: 570 ATGHLLMRLLKEAEERGILYHDELNSRTHSEASYRLSRPFHVTLLAQNETGLKNLFKLVS 629

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               H +Y   V     S  ++    L       +     + ++       +        
Sbjct: 630 --LSHVQYFHRVPRIPRSVLVKHRDGLLVGSGCDKGELFDNLIQKAPEEVEEIARFYDFL 687

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            + P    K      +  D +       ++R    L ++              + + ++Y
Sbjct: 688 EVHPPAVYKPLIEMDYVKDEEMIK---DIIRSIVALGEKLDIPVVATGNVHYLNPEDKIY 744

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                                +L  +    +D  L    F          +     Q   
Sbjct: 745 RKILIHSQGGANPLNRH----ELPDVYFRTTDEMLDCFSF--LGAEKAKEIVVDNTQKIA 798

Query: 422 EH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                    K  L   RIE   ++++ +    + +  GD   + +   L + L+ +I
Sbjct: 799 SLIGEVKPIKDDLYTPRIEGADDEIREMSYRRAKDIYGDPLPKIVEERLEKELKSII 855


>gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
          Length = 1432

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/482 (13%), Positives = 135/482 (28%), Gaps = 60/482 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++  + + ++    F      +     +   +T 
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPERSIPDKITELTS 471

Query: 63  ITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           IT            E   +I  +F       ++  +N  FD  +          +     
Sbjct: 472 ITDDMVDDK-----EAIDKILPRFIEFIGNSVVVAHNAAFDVSFINKNCKDLKIEF---- 522

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               NS  D + + R                     +KL  +A   GI   N H A  D 
Sbjct: 523 ---KNSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDA 566

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT  ++    E   +         NK  L  +   +  T  + +         N   + 
Sbjct: 567 KATADILLKAFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILAKNAVGLKNLYKLV 626

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y         S      + L      +      + LKG     +K +      
Sbjct: 627 SK-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI----- 680

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
                         +   +++  ++N ++  ++       K      + +        ++
Sbjct: 681 ------DFYDYLEIQPLGNNEFLVKNGSVKDEKELQEINKKICELGEFYNKPVVATCDVH 734

Query: 362 DGFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----S 413
                    + +         +  +    L    ++  L E  F Y        +    +
Sbjct: 735 FLDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNT 790

Query: 414 EKEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467
            K      E     +     +IE  +  ++ ++ E      GD   E +   L + L  +
Sbjct: 791 NKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHSIYGDPLPEIVEKRLTKELNSI 850

Query: 468 IP 469
           I 
Sbjct: 851 IN 852


>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
          Length = 1436

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/476 (13%), Positives = 128/476 (26%), Gaps = 49/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            ++++D ET G     D   + A V+V    E I+  E F       +      + +TGI
Sbjct: 420 TYIVFDVETTGLSANYDTIIELAAVKV-FDGEIIDRFERFA---NPHHPLSATTINLTGI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E S  +  F       I+  +N  FD  +    + R           
Sbjct: 476 TDDMVKDAP----EVSEVVTDFKKWAEDGILVAHNASFDMGFLNISYQRAGLK------K 525

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L++ R +Y                 + +L  LA    +E    H A  D  A
Sbjct: 526 ASNPVIDTLELARFLY-------------PSMKNHRLNTLAKKLDVELTQHHRAIYDAEA 572

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  ++  + ++  +     +D  N + + +    +   P          +          
Sbjct: 573 TGYILAKLLKETYEKEIKYHDQLN-DYMGEGDSYKRARPYHCTLIAQNDTGLKNLFKLIS 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S   +  + +       +       ++        +        +
Sbjct: 632 ISHLHYFHRVPRIPRSVLQKYREGILVGSGCDKGEVFEGMMQKSPEEVEDKARFYDYFEV 691

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P +              K       ++     L ++ +           +D    +Y  
Sbjct: 692 HPKEVYSHLIELELVQSEKNLE---DIIHNIVALGEKLETPVVASGNVHYKDPKDSIYRK 748

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT-------LSEKE 416
                               L  ++   +D  L    F +               L    
Sbjct: 749 ILIGSQGGANPLNRH----NLPKVHFRTTDEMLH--AFEFLGNEKAKEIVVTNTNLIADM 802

Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468
             +  +  K  L   +I+    +++ +S         E L       + + L+ +I
Sbjct: 803 IDEI-KPIKDDLYTPKIDGADEEIRRMSYSMAKSIYGENLPEIVEARIEKELKSII 857


>gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
 gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
          Length = 1441

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/482 (15%), Positives = 145/482 (30%), Gaps = 56/482 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + F+I+D ET G     D   +   +++ +    I+S          +     + V +
Sbjct: 422 LEDEFIIFDIETTGLSSKNDEITEIGAIKI-KNNRIIDSFSTL---INPERSIPEKIVEL 477

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+         +E      + QF      C +  +N  FD  + R+   R        
Sbjct: 478 TGISDDMVKDQPTIEV----VLPQFLDFIGDCPVVAHNSDFDTGFIRDKAERYELSFDNI 533

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D ++   A  PD  +           +L  +A    I   N H A  D
Sbjct: 534 ----------AIDTLKLARALLPDLKK----------HRLNVIAKELNISLENHHRAVDD 573

Query: 181 VYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  +    +     K    L D  +K   +          ++ ++  +    +   L
Sbjct: 574 AKATAEIFIKFVEMMNKKDIRTLKDINDKLSKKLDYKTLKSYHIIILAKNYIGLENLYRL 633

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
           ++    +  YK   I  +L    R    L +   A  LF S    K    +  K      
Sbjct: 634 VSESHINYFYKKPRIPRSLLNKFREGLILGTACEAGELFQSILSSKPQSHIE-KIAKYYD 692

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
              + PI   +    +    + +   E N  ++     L     A  +  +  +   +  
Sbjct: 693 YLEIQPIGNNRFLIEKNLAKNEEDLKELNRKIVDLGERLNIPVVATCDVHFLENKDSIFR 752

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           ++                  +  E  + L    +D  L E    Y  +     +      
Sbjct: 753 KILMTGQGF-----------SDAEDQAPLYFRTTDEMLEEFI--YLGKEKAEEVVIHATN 799

Query: 419 DWLEHRKKML------TRSRIEEYKNKL-----QSLSGEYKGDEGKEGLINALYEYLQWV 467
              +  + ++          IE  + +L     + +   Y  D  +  + N L + L  +
Sbjct: 800 RINDAIEDIIPIPDGTFPPEIEGSEEELRRMCYEKVRRIYGEDVPEL-VKNRLDKELNSI 858

Query: 468 IP 469
           I 
Sbjct: 859 IS 860


>gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland]
 gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum F str. Langeland]
 gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum F str. 230613]
          Length = 1432

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/482 (13%), Positives = 135/482 (28%), Gaps = 60/482 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++  + + ++    F      +     +   +T 
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPERSIPDKITELTS 471

Query: 63  ITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           IT            E   +I  +F       ++  +N  FD  +          +     
Sbjct: 472 ITDDMVDDK-----EAIDKILPRFIEFIGNSVVVAHNAAFDVSFINKNCKDLKIEF---- 522

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               NS  D + + R                     +KL  +A   GI   N H A  D 
Sbjct: 523 ---KNSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDA 566

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT  ++    E   +         NK  L  +   +  T  + +         N   + 
Sbjct: 567 KATADILLKAFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILAKNAVGLKNLYKLV 626

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y         S      + L      +      + LKG     +K +      
Sbjct: 627 SK-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI----- 680

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
                         +   +++  ++N ++  ++       K      + +        ++
Sbjct: 681 ------DFYDYLEIQPLGNNEFLVKNGSVKDEKELQEINKKICELGEFYNKPVVATCDVH 734

Query: 362 DGFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----S 413
                    + +         +  +    L    ++  L E  F Y        +    +
Sbjct: 735 FLDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNT 790

Query: 414 EKEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467
            K      E     +     +IE  +  ++ ++ E      GD   E +   L + L  +
Sbjct: 791 NKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHAIYGDPLPEIVEKRLTKELNSI 850

Query: 468 IP 469
           I 
Sbjct: 851 IN 852


>gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 1437

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/475 (12%), Positives = 140/475 (29%), Gaps = 50/475 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G  V  ++  + AGV++ +  ++I     F                +T I
Sbjct: 422 TYVVFDIETTGLSVINNKIIEIAGVKM-KDGKEIGRYTTF---IDPHEKIPYNIQQLTNI 477

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          + +  + +F       ++  +N RFD  + +                
Sbjct: 478 TDEMVQGAP----DIAEELPKFVEFVGDAVLVAHNARFDMGFIQANLKNIGMPEL----- 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L++ R                    + +L  LA    +   N H A  D  A
Sbjct: 529 -PNPSLDTLELARL-------------LFPSLKNHRLNTLADKFKVSLENHHRAIDDTVA 574

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
            + ++  + ++  +        R  + + K +           +      ++   L++  
Sbjct: 575 LMHILNHLLQEAEEQNLTQL-NRLNDHVGKDLRNTRPFHCCIYAKDMVGKKNLYRLVS-- 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S  + + + L      ++       L   +              +
Sbjct: 632 LSHTEYFHRVACIPKSKLIELREGLIIASGCEKGEFFEAVLNKSMEEAEGIAEFYDVLEI 691

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P+DY +    +          + +  ++R    L     A  N  Y      V   +  
Sbjct: 692 QPVDYNRHLVEKGLVGSKADLEDAVKRIIRIGEKLGKPVIATGNVHYLHPRDKVCRDITI 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQDW 420
                               +    +   +   L +  F  + +A       + +    +
Sbjct: 752 NGITG--------FSPLKDMKKPDAHFRTTSDMLEQFQFLGKEKAYEVVVKNTNELADRF 803

Query: 421 L--EHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVIP 469
              E     L    IE    +++    + + +  G++  + +I+ L    + ++P
Sbjct: 804 EELELFPDKLFTPIIEGADEEIRTKCYNTAKQIYGEDLPQVIIDRLE---KELVP 855


>gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree]
 gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 1432

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/481 (12%), Positives = 133/481 (27%), Gaps = 58/481 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++  + + ++    F            +   +T 
Sbjct: 416 DTFVVFDLETTGFSNKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPGRSIPDKITELTS 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++    + + +F       ++  +N  FD  +          +      
Sbjct: 472 ITDDMVQDKETID----KILPRFIDFIGDSVVVAHNAAFDVSFINKNCKDLKIEF----- 522

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              NS  D + + R                     +KL  +A   GI   N H A  D  
Sbjct: 523 --ENSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDAK 567

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  ++    E   +         NK  L  +   +  T  + +         N   +  
Sbjct: 568 ATADILLKSFEMLKEKEIITLHNLNKEFLGNINIKKEPTYHLIILAKNAVGLKNLYKLVS 627

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y         S      + L      +      + LKG     +K +       
Sbjct: 628 K-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI------ 680

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
                        +   +++  + N ++  ++       K      + +        ++ 
Sbjct: 681 -----DFYDYLEIQPLGNNEFLVRNGSVKDEKELEEINKKICELGEFYNKPVVATCDVHF 735

Query: 363 GFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SE 414
                   + +         +  +    L    ++  L E  F Y        +    + 
Sbjct: 736 LDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNTN 791

Query: 415 KEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
           K      E           +IE  +  ++ ++ E      GD   E +   L + L  +I
Sbjct: 792 KIADMIDEIKPIPDETFPPKIEGAEEDIRRMTTEKAHAIYGDPLPEIVEKRLTKELNSII 851

Query: 469 P 469
            
Sbjct: 852 N 852


>gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
 gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
          Length = 1446

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/475 (13%), Positives = 134/475 (28%), Gaps = 47/475 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     +   + + V++  +   IES E F       +      + +TGIT
Sbjct: 426 YVVFDVETTGLSAVYNSIIELSAVKM-HKGNIIESFEQF---IDPGHPLSQTTINLTGIT 481

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E E      +F       I+  +N  FD  +      ++           
Sbjct: 482 DEMVHGS-KSEEEVLTLFKEF---AGDHILVAHNASFDMGFLNTSNAKHNIPD------A 531

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                 S +L  LA   GI     H A  D   T
Sbjct: 532 TNPVIDTLELSRFLH-------------PQYKSHRLNTLAKKYGINLEQHHRAIFDSETT 578

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L WL  ++  +  E  Y  +    + +    +   P          +          +
Sbjct: 579 GQLCWLFLKEAKEEHEMFYHDQLNEHIGEGDAYKRARPFHATIMATSQAGLKNLFKLVSS 638

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
               Y         S   ++ + L       +       ++        +        +M
Sbjct: 639 SMVNYFFRTARLPRSELNKLREGLIIGTACSQGEVFEAMMQKGYDEAKNKAKFYDYIEVM 698

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P +       +    +     E +  L +     +         +  +    +  +Y   
Sbjct: 699 PKEVYAPLIEQELVTNESDLEEIIRNLVKIGKELNIPVVATGNVHYLNP---EDSIYRKI 755

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH- 423
             +               +L  ++   +   L    F    +     +  +      +  
Sbjct: 756 LINSQGGANPLNRA----ELPEVHFRTTTEMLETFSF--LGKETAQQIVVENTNKIADMV 809

Query: 424 ------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                  K  L   +IE  +++++ L    +    G+   E +   + + L  +I
Sbjct: 810 EDGITPVKTDLYTPKIEGSEDEIRQLSYDEAHRLYGNPLPEIIEKRIEKELNSII 864


>gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
           27755]
 gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
           27755]
          Length = 1521

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/486 (14%), Positives = 132/486 (27%), Gaps = 60/486 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +   +V++D ET G   A D+  +   V+V    E  +    F                +
Sbjct: 474 LKGTYVVFDLETTGFSSAKDKIIEIGAVKV-ENGEITDKYSTF---VNPKIPIPFRITQL 529

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT +  +    +E      + QF       ++  +N  FD  +      +   +    
Sbjct: 530 TSITDEMVMESPEIE----TILPQFLKFVGDAVLVAHNASFDVSFIEENCRQQGIEPDFT 585

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           S          +D +       P   +          FKL  +A A  I   + H A  D
Sbjct: 586 S----------VDTVGLARVLLPTLSK----------FKLNVVAKALNISQEHHHRAVDD 625

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
              T  +     +   +      D  N         I+ M P  HV  +         L 
Sbjct: 626 ARVTAEIYVKFIQMLEERGIETLDQMNHFGAHNAEAIRKM-PSYHVIVLAKNDIGRVNLY 684

Query: 241 APVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
             ++  H  Y         S  ++  + L      +        L +       + V+  
Sbjct: 685 TLISKSHLEYFGRQPRMPKSEVLKYREGLIIGSACEAGELYQAILGEKSAERIARIVNFY 744

Query: 299 KCPILMPI----DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
               + P+         +  E+   +      N  ++R          A  +  +     
Sbjct: 745 DYLEIQPLGNNRFMIDSDRVEKVQSEEDLREINREIIRLGERFDKPVVATCDVHFMDPED 804

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARN 407
           +V  ++                     +Q + L L  +D  L E               N
Sbjct: 805 EVYRRIIMAGKGFK-----------DADQQAPLYLHTTDEMLEEFEYLGSAKAKEIVIDN 853

Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEY 463
            P+ +     +     R        I +    L+ +    +    GD   E +   L   
Sbjct: 854 -PNMI-ADMVEKISPVRPDK-CPPVIPDSDKTLREICYNKAHSMYGDPLPEIVTERLERE 910

Query: 464 LQWVIP 469
           L  +I 
Sbjct: 911 LNSIIS 916


>gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 1402

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/477 (14%), Positives = 145/477 (30%), Gaps = 54/477 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G D   DR  +   V++    +  +    F      +         +TGI
Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKI-ENGQITDRFSTF---VDPEGKIPVRISELTGI 444

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +           I +F    +  ++  +N +FD  + +  +             
Sbjct: 445 YQDMVDKAPK----LIDAILEFERFASGSVLVAHNAQFDIGFLKKAYQECGI-------- 492

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  +D +        D           +S+KL  +A    +E  + H A +D   
Sbjct: 493 --IFDYTYIDTLELSRRLLTDL----------SSYKLNKVAEFLNVELRHHHRADSDAET 540

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242
           T  +   + E+            N  +     D+++ +    +        ++   L++ 
Sbjct: 541 TAGIFISLLERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY 600

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 YK   I  +L   ++    + S   +  +F +  E K    +  K         
Sbjct: 601 SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIE-KIAAFYDFLE 659

Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           +MP++       E +  D +   E N  +      L     A  +  Y    Q V  Q+ 
Sbjct: 660 IMPVENNSFLIREGYLKDEEDLREINKKIYNLGKKLGKLVVATSDAHYCHPHQRVLRQIL 719

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                               E    L    +D  L E  F Y  ++  + +  +      
Sbjct: 720 KHNQGYN-----------DVENDPQLYFRTTDEMLKE--FEYLGKDACYEVVVENTNKIA 766

Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  +            +I+  + ++ ++    + E  GD   E +   L + L  +I
Sbjct: 767 DMIEDVKPVPDETFPPKIDGAEEEIYNMTMKKAHEIYGDPLPEIVKARLEKELNSII 823


>gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
           formatexigens DSM 14469]
 gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
           formatexigens DSM 14469]
          Length = 1530

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/434 (14%), Positives = 124/434 (28%), Gaps = 47/434 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G     +R  +   V+V    E  +    F                +T I  
Sbjct: 511 VVFDLETTGFSPTQNRIIEIGAVKV-ENGEITDRFSTF---VNPQVPIPFRIEQLTSIND 566

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
              +    +E    + + +F       ++  +N  FD  +      R             
Sbjct: 567 NMVMDAPTIE----QVLPEFLDFVGDAVLAAHNASFDVSFIEENMRRLGL---------- 612

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +  +D +       P   +          FKL  +A A  ++  + H A  D   T 
Sbjct: 613 WRDFTYVDTVALARVLLPQLNR----------FKLDTVAKALHVQLQHHHRAVDDAECTA 662

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245
            +     E         +D  N+     L  I+ + P  HV  +         L   V++
Sbjct: 663 GIYLKFMEMLKLQGADTFDQVNELGSASLDQIKKL-PTYHVIILAKNDVGRVNLYRLVSF 721

Query: 246 -HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPIL 303
            H +Y +       S   +  + L      +        L+G     I + V       +
Sbjct: 722 SHLQYYNRRPRIPKSALNQYREGLIVGSACEAGELFRAVLEGKSEPEIARIVDFYDYLEI 781

Query: 304 MPIDYCKKEHFERWGIDHKRCLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            PI        E   I+ +  L   N  ++R          A  +  + +   ++  ++ 
Sbjct: 782 QPIGNNAFLLKEDNDINSEEDLRELNRKIVRLGEQFNKPVVATCDVHFLNPEDEIYRRII 841

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                               ++ + L L  ++  L E    Y        +         
Sbjct: 842 MAGKGFK-----------DADEQAPLFLRTTEEMLKEFA--YLGSEKAEEVVITNTNKIA 888

Query: 422 EHRKKMLTRSRIEE 435
           +   + ++  R ++
Sbjct: 889 DMC-EKISPVRPDK 901


>gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
 gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
          Length = 1463

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/449 (13%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNIVAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNVDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVLSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R      P+ L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AETFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA04375]
          Length = 1463

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/449 (13%), Positives = 116/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       Y        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGYPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R      P+ L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNAL-A 815

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
              +   E  K  L    I++ +  +  L
Sbjct: 816 DIFEPV-EVVKGDLYTPFIDKAEETVAEL 843


>gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397]
 gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall]
 gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC
           3502]
 gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A str. Hall]
          Length = 1432

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 64/482 (13%), Positives = 135/482 (28%), Gaps = 60/482 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++  + + ++    F      +     +   +T 
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPERSIPDKITELTS 471

Query: 63  ITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           IT            E   +I  +F       ++  +N  FD  +          +     
Sbjct: 472 ITDDMVDDK-----EAIDKILPRFIDFIGDSVVVAHNASFDVSFINKNCKDLKIEF---- 522

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               NS  D + + R                     +KL  +A   GI   N H A  D 
Sbjct: 523 ---ENSVMDTVTLSR-------------FLFPELKRYKLNVIAKHLGISLENHHRAVDDA 566

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT  ++    E   +         NK  L  +   +  T  + +         N   + 
Sbjct: 567 KATADILLKSFEMLREKEIITLHSLNKEFLGNINIKKEPTHHLIILAKNAVGLKNLYKLV 626

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y         S      + L      +      + LKG     +K +      
Sbjct: 627 SK-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI----- 680

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
                         +   +++  ++N ++  ++       K      + +        ++
Sbjct: 681 ------DFYDYLEIQPLGNNEFLVKNGSVKDEKELEEINKKICELGEFYNKPVVATCDVH 734

Query: 362 DGFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----S 413
                    + +         +  +    L    ++  L E  F Y        +    +
Sbjct: 735 FLDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNT 790

Query: 414 EKEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWV 467
            K      E     +     +IE  +  ++ ++ E      GD   E +   L + L  +
Sbjct: 791 NKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHSIYGDPLPEIVEKRLTKELNSI 850

Query: 468 IP 469
           I 
Sbjct: 851 IN 852


>gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum C str. Eklund]
 gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum C str. Eklund]
          Length = 1441

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/478 (12%), Positives = 146/478 (30%), Gaps = 52/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +F  V++ +    I+S   F      +         +T 
Sbjct: 426 DTFVVFDLETTGFSSQYDKIIEFGAVKI-KNGNIIDSFSAF---VNPEMKIPYRITELTS 481

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       ++    + + +F       ++  +N  FD  + R        +      
Sbjct: 482 ITNEDVKDAETID----KVLPKFMKFAEDTVLVAHNSNFDMSFIRKNCNDLNIECNYT-- 535

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D + + +                     +KL  +A   G+   N H A  D  
Sbjct: 536 -----VMDTIPLAK-------------FLFPELKRYKLNTIAKHLGVSLENHHRAVDDAK 577

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241
           AT  ++    +   ++     +  N   L  +   +  T  + +        ++   LI+
Sbjct: 578 ATGDILVHCFKLLKEMEITSLNDLNNKFLGNIDVKKLPTYHLIILAKNQVGLKNLYKLIS 637

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299
                  YK   +  +L    +    + S   A  ++ +    +++  +   IK  +  +
Sbjct: 638 FSNLDYFYKKPRMPKSLIEQYKEGLIIGSACEAGEVYKAVLEGKIEDELKELIKFYNYLE 697

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              +M  ++  ++   +     K     +  L    N                       
Sbjct: 698 IQPIMNNEFMLRKGIVKNEDQLKEINRKIYELGVN-NDLPVVATGDVHFLDFKDVKFREI 756

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN----FPHTLSEK 415
           L  G             L+T  E L        D           A+      P  ++ +
Sbjct: 757 LMTGQGFSDAANQPPLYLKTTSEMLKEFEYLGED----------IAKEVVIYNPQKIANE 806

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
              ++++         +I+  +  +++++ E      G+   + + + L + L  +I 
Sbjct: 807 V--EFVKPIPDETFPPKIDGAEEDIRNMTLEKAYTIYGNPLPKVVHDRLEKELNSIIN 862


>gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1402

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/477 (14%), Positives = 146/477 (30%), Gaps = 54/477 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G D   DR  +   V++    +  +    F      +         +TGI
Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKI-ENGQITDRFSTF---VDPEGKIPVRISELTGI 444

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +           I +F    ++ ++  +N +FD  + +  +             
Sbjct: 445 YQDMVDKAPK----LIDAILEFERFASSSVLVAHNAQFDIGFLKKAYQECGI-------- 492

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  +D +        D           +S+KL  +A    +E  + H A +D   
Sbjct: 493 --IFDYTYIDTLELSRRLLTDL----------SSYKLNKVAEFLNVELRHHHRADSDAET 540

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242
           T  +   + E+            N  +     D+++ +    +        ++   L++ 
Sbjct: 541 TAGIFISLLERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY 600

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 YK   I  +L   ++    + S   +  +F +  E K    +  K         
Sbjct: 601 SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIE-KIAAFYDFLE 659

Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           +MP++       E +  D +   E N  +      L     A  +  Y    Q V  Q+ 
Sbjct: 660 IMPVENNSFLIREGYLKDEEDLREINKKIYNLGKKLGKLVVATSDAHYCHPHQRVLRQIL 719

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                               E    L    +D  L E  F Y  ++  + +  +      
Sbjct: 720 KHNQGYN-----------DVENDPQLYFRTTDEMLKE--FEYLGKDACYEVVVENTNKIA 766

Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  +            +I+  + ++ ++    + E  GD   E +   L + L  +I
Sbjct: 767 DMIEDVKPVPDETFPPKIDGAEEEIYNMTMKKAHEIYGDPLPEIVKARLEKELNSII 823


>gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88]
 gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1427

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/401 (14%), Positives = 120/401 (29%), Gaps = 42/401 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + +V++D ET G     D+  +   V++ ++ + ++    F      + +   + + +
Sbjct: 409 LEDSYVVFDIETTGFSNKNDKIIEIGAVKI-KEGKVVDKYSTF---VNPERIIPEKIIEL 464

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI          +E E   +   F       I+  +N  FD  + +             
Sbjct: 465 TGIHDYMVKDAPKIE-EVLPKFIDFIEDS---ILVAHNANFDVSFIKKNCKDFGIHFN-- 518

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D + + + +Y                  +KL  +A   GI  +N H A  D
Sbjct: 519 -----NPILDTIPLCKFLY-------------PELKRYKLNVVAKHLGIPLLNHHRAVED 560

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTAL 239
              T  ++    E          +  N+   +     ++ T  V +        ++   L
Sbjct: 561 AKTTGDILLKAFEDLKDKEIMNLNMLNEEYFKNQDIKKSPTYHVIILVKNKIGLKNLYKL 620

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LN 298
           I+    +  YK   +  +L    R    + S   A +++   + L       +KEV    
Sbjct: 621 ISESHLNHFYKKPRMPKSLINKYREGLMIGSACEAGQVYK--EVLMDKSKEELKEVISFY 678

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
               + PI             D +   +    +           A  N     ++ DV  
Sbjct: 679 DYLEIQPIKNNYFMIRNGIVKDEEELRDINKKI--------YNLAEENNMPVVATCDVHF 730

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
                               +  E    L L  +D  L E 
Sbjct: 731 LDKKDEVFRKILMAGQGF--SDAENQPPLYLRTTDEMLKEF 769


>gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 1402

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/477 (15%), Positives = 146/477 (30%), Gaps = 54/477 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G D   DR  +   V++    +  E    F      +         +TGI
Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKI-ENGQITERFSTF---VDPEGKIPVRISELTGI 444

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +        S  I +F    +  ++  +N +FD  + +  +             
Sbjct: 445 YQDMVDKAPK----LSDAILEFERFASGSVLVAHNAQFDIGFLKKAYQECGI-------- 492

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  +D +        D           +S KL  +A    +E  + H A +D   
Sbjct: 493 --IFDYTYIDTLELSRRLLTDL----------SSHKLNKVAEFLNVELKHHHRADSDAET 540

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242
           T  +   + E+            N  +     D+++ +    +        ++   L++ 
Sbjct: 541 TANIFISLVERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY 600

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 YK   I  +L   +R    + S   +  +F +  E K    +  K         
Sbjct: 601 SHLEYFYKRPRIPKSLLIQLRDGLLIGSACESGEIFRAFLEGKSEEEIE-KIAAFYDFLE 659

Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           +MP++       E +  D +   E N  + +    L     A  +  Y    Q V  Q+ 
Sbjct: 660 IMPVENNSFLIREGYLKDEESLREINKKIYQLGKKLGKLVVATSDAHYCHPHQRVLRQIL 719

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                               E    L    +D  L E  F Y  R+  + +  +      
Sbjct: 720 KHNQGYD-----------DVENDPQLYFRTTDEMLKE--FEYLGRDACYEVVVENTNKIA 766

Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  +            +IE  + ++ ++    + E  GD   E +   L + L  +I
Sbjct: 767 DMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSII 823


>gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
 gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
          Length = 1438

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/476 (12%), Positives = 138/476 (28%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     DR  + + V++ +    I+  E F       +    +   +T I
Sbjct: 418 TYVVFDTETTGLSAIYDRVIELSAVKM-KNSNVIDQFEEF---IDPGFHLSEQTTNLTSI 473

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  +    F       I+  +N+ FD  +    + R+          
Sbjct: 474 TDEMVHGS-KSEEEVFKLFRDF---CEDAIVVGHNVTFDIGFMNTGYVRHGMPEI----- 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L + R +Y                  ++L  LA    +   + H A  D   
Sbjct: 525 -KNPIIDTLTLARFLY-------------PNMRGYRLNTLAKKFDVNLEHHHRAIYDAET 570

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L +L  +     +  +Y     + + +    ++  P   V                 
Sbjct: 571 TGHLNYLFLKDAEDRYGIVYHDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVS 630

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     +   +  + +               ++  +    K+        +
Sbjct: 631 LSNVDYFFRVPRVPRTQLEKFREGIIVGSACSSGEVFTAMMQKGMDEARKKAGFYDYLEV 690

Query: 304 MPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D     E L  +++    L+    A  +  Y +    +  ++  
Sbjct: 691 QPKRAYAPLIESHLISDEANLEEILTNIVKLGDELKKPVVATGDVHYLNPQDYIYRKILI 750

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                 +             +L  L+   ++  L +  F          +         +
Sbjct: 751 NSQGGANPLNRQ--------ELPDLHFLTTNEMLDDFAF--LGAEKAKEIVVTNTNRIAD 800

Query: 423 HR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   ++E  +++++      + ++ GD   + + + L   L+ +I
Sbjct: 801 DIDDVHPLKDRLYTPKMEGSEDEIKERTMTTAHQWYGDPLPKIVDDRLKTELKSII 856


>gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 1463

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/449 (13%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTNLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D       +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMDELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R      P+ L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|13959345|sp|Q9CDT7|DPO3_LACLA RecName: Full=DNA polymerase III polC-type; Short=PolIII
          Length = 1638

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 105/404 (25%), Gaps = 35/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I+  + F       Y        +TGI
Sbjct: 595 TYVVFDVETTGLSAVHNDLIQIAATKM-HKGNPIDEFDEF---INPGYRLSEFTTELTGI 650

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E   +  +F       I+  +N  FD  +    + RN          
Sbjct: 651 TDDHVKNA-KPLYEVLTKFQKF---CEGTILVAHNATFDVGFMNMNYSRNGLPII----- 701

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                  F L  L     I   + H A  D  A
Sbjct: 702 -TQPVVDTLEFARNLY-------------PEMKRFGLGQLTKKFQIGLEHHHMANFDAEA 747

Query: 184 T---LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T   L +       +   +  L +  +K              +   +      ++   ++
Sbjct: 748 TGRLLFVFLEELRTRNTGWTSLLELNDKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIV 807

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    + +Y   +     S      + L      +        +       ++       
Sbjct: 808 SF--GNVKYYAGLPRVPRSVLEANREGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDF 865

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + P    +           K   + L  L++    L     A  N  Y +    +  +
Sbjct: 866 IEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYRE 925

Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
           +              +       P  L   +   +D  L    F
Sbjct: 926 IIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEAFSF 969


>gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1437

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/474 (12%), Positives = 143/474 (30%), Gaps = 50/474 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++++D ET G  +  ++  + AGV++    ++++    F                +T I 
Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMRE-GKEVDRFSTF---INPHEKIPYHIQQLTNIN 476

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E   ++ +F       I+  +N RFD  + +                 
Sbjct: 477 DEMVKDAP----ELEPKLREFIDFIGDSILVAHNARFDIGFIQANLKSIGMPDV------ 526

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                 + +L  L+    +   N H A  D  A 
Sbjct: 527 TNPVLDTLELARFLH-------------PTMKNHRLNTLSAKYKVSLDNHHRAVDDSVAL 573

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +++ +     +         N      L    +     ++  +  A + N   +  + 
Sbjct: 574 GGVLFGLINDAAERNITGLHQLN--DYVGLDISNSRPFHCNIYALNAAGKKNLFKMVSI- 630

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            H  +   V     S  + + + +  +   ++       L       ++         + 
Sbjct: 631 SHTEHFKRVACIPKSKLVDMREGILVISGCEKGEFFETVLNKSYEEALEVARFYDALEIQ 690

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           P+D+      +          + +  + +    L     A  N  Y +    +   +   
Sbjct: 691 PVDFYMHLVDKGLVGSRAEIEQAMRRICEIGDELGKPVIATGNVHYLNPRDKLYRDIAIH 750

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL--SEKEKQDWL 421
                              +    +L  ++  L E  F   AR +   +  + +    + 
Sbjct: 751 GITG--------FSPLKDLRKPDAHLRTTEEMLREFAFLGEARAYEVVVKNTVELSNRFE 802

Query: 422 --EHRKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVIP 469
             E     L    IE  + ++++     +    GD+  + +I+ L    + ++P
Sbjct: 803 PFEMFPDKLFTPIIEGAEEEIRNTCYDTAKSMYGDDLPQVVIDRLE---KELVP 853


>gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 1434

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 64/485 (13%), Positives = 133/485 (27%), Gaps = 64/485 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++++D ET G     +   + A V+V +  E ++  E F           P  + +TG
Sbjct: 418 ETYIVFDVETTGLSAVYNTIIELAAVKV-KNGEIVDRFESFA---NPHEKLTPLIIDLTG 473

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E    +  F        +  +N  FD  +    F +  Y       
Sbjct: 474 ITDDMVENAP----EVDDVLKDFHEWIGDATLVAHNASFDMGFINAGFQKIGY------- 522

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             G++   ++D +                     +++L  L     IE V  H A  D  
Sbjct: 523 --GHATNPVIDTLELGRLLY----------PTFKNYRLNTLCKKFNIELVAHHRAIYDAE 570

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+W + +        +  +   N+     D +   P   +                
Sbjct: 571 ATGHLLWKMVKDATSQG--IMKHFQLNEQTSKDDYKKQRPNHCIIFGKTKEGLKNLYKLV 628

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H  Y   V     S        L               ++       K         
Sbjct: 629 SLSHINYFYRVPRIPKSVLSEHRDGLMIGSACDNGEVFDAMMQKSPEEVEKVAEFYDYLE 688

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P         +    D         ++++  +L D+          +   + +  +Y 
Sbjct: 689 VQPPSNYNHLVEKEIIRDELALK---DIIKKIIDLGDKLGKKVVATGNAHYLNEEDAIYR 745

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420
                           + P     ++   +D  L    F          L E++ ++   
Sbjct: 746 KILIASQGGANPLNRTSLP----KVHFRSTDEMLSCFSF----------LPEEKAKEIVI 791

Query: 421 ------------LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYL 464
                       ++     L   +IE   ++++ L    +    G+   + + + L + L
Sbjct: 792 TNTVAVANEIDDIKPIPDDLYTPKIEGADDEMRELSYGRARSIYGETLPKIVEDRLEKEL 851

Query: 465 QWVIP 469
             +I 
Sbjct: 852 NSIIS 856


>gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1635

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 104/404 (25%), Gaps = 35/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I+  + F       Y        +TGI
Sbjct: 592 TYVVFDVETTGLSAVHNDLIQIAATKM-HKGNPIDEFDEF---INPGYRLSEFTTELTGI 647

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E   +  +F       I+  +N  FD  +    + RN          
Sbjct: 648 TDDHVKNA-KPLYEVLTKFQKF---CEGTILVAHNASFDVGFMNMNYSRNGLPII----- 698

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                  F L  L     I   + H A  D  A
Sbjct: 699 -SQPVVDTLEFARNLY-------------PEMKRFGLGQLTKKFQIGLEHHHMANFDAEA 744

Query: 184 T---LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T   L +       +   +  L +   K              +   +      ++   ++
Sbjct: 745 TGRLLFVFLEELRTRNTGWTSLLELNAKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIV 804

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    + +Y   +     S      + L      +        +       ++       
Sbjct: 805 SF--GNVKYYAGLPRLPRSVLEANSEGLLVGSACEVGEVFDAAINKTFEETLEIAKFYDF 862

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + P    +           K   + L  L++    L     A  N  Y +    +  +
Sbjct: 863 IEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYRE 922

Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
           +              +       P  L   +   +D  L    F
Sbjct: 923 IIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEAFSF 966


>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
 gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1390

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 153/472 (32%), Gaps = 50/472 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V+ D ET G +   D   +   V+  R  + I+    F  +P      + +++ ITGI
Sbjct: 382 TYVVLDLETTGLNPRSDEIMEIGAVKT-RDGKVIDEFHTF-VRPNK---LNKKSLNITGI 436

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  + + +        I+  +N  FD  + +NI  ++  +       
Sbjct: 437 TEDMLKDAP----DIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNP---- 488

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +D +R   A   + I+         SF L  L    G+     H A  D   
Sbjct: 489 ------PYIDTLRLSQALLRNKIK---------SFSLDKLVDHFGLGAFQHHRALDDARV 533

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T+ + W + E   K     ++  NK  +  +  +      V V         N   +   
Sbjct: 534 TVNVFWKLIELAKKKSITTFEKLNKL-VENINPLVKHPQHVTVLVRNKTGLKNLYKLISK 592

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A H      V     S   +  + L               L+       + +       +
Sbjct: 593 A-HTETFFVVPQVLKSELEKHREGLLIGTGCANSEIFELALQRDTGALTEALKFYDYIEI 651

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP+D    E F R     +   E   LL +    L      + N  +         ++  
Sbjct: 652 MPLDTINSEEFTR-----EEAKEAYKLLYQVGKELNMPVVMVSNAHFIDPEDIKARKVLL 706

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW-- 420
              ++++ +  +  LRT  E +      F D    ++       N      +K       
Sbjct: 707 APQSNIEDEEANYYLRTTQEMIDAALEIFEDE---QIAKEVVVDN-----PKKIANMIDT 758

Query: 421 LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           ++  +K L   +IE  + KL+++    + +  G+   E +   + + L  +I
Sbjct: 759 IQPLEKKLHPPKIEGAEEKLRTMTYEKAYQLYGNPLPEIVEKRIEKELNSII 810


>gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11]
 gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 1635

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 104/404 (25%), Gaps = 35/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I+  + F       Y        +TGI
Sbjct: 592 TYVVFDVETTGLSAVHNDLIQIAATKM-HKGNPIDEFDEF---INPGYRLSEFTTELTGI 647

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E   +  +F       I+  +N  FD  +    + RN          
Sbjct: 648 TDDHVKNA-KPLYEVLTKFQKF---CEGTILVAHNASFDVGFMNMNYSRNGLPII----- 698

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                  F L  L     I   + H A  D  A
Sbjct: 699 -SQPVVDTLEFARNLY-------------PEMKRFGLGQLTKKFQIGLEHHHMANFDAEA 744

Query: 184 T---LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T   L +       +   +  L +   K              +   +      ++   ++
Sbjct: 745 TGRLLFVFLEELRTRNTGWTSLLELNAKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIV 804

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    + +Y   +     S      + L      +        +       ++       
Sbjct: 805 SF--ENVKYYAGLPRLPRSVLEANREGLLVGSACEVGEVFDAAINKTFEETLEIAKFYDF 862

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + P    +           K   + L  L++    L     A  N  Y +    +  +
Sbjct: 863 IEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLVKPVLATGNLHYLNPEDAIYRE 922

Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
           +              +       P  L   +   +D  L    F
Sbjct: 923 IIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEAFSF 966


>gi|15674106|ref|NP_268281.1| DNA polymerase III PolC [Lactococcus lactis subsp. lactis Il1403]
 gi|12725180|gb|AAK06222.1|AE006440_8 DNA polymerase III, alpha chain [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 1658

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 105/404 (25%), Gaps = 35/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I+  + F       Y        +TGI
Sbjct: 615 TYVVFDVETTGLSAVHNDLIQIAATKM-HKGNPIDEFDEF---INPGYRLSEFTTELTGI 670

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E   +  +F       I+  +N  FD  +    + RN          
Sbjct: 671 TDDHVKNA-KPLYEVLTKFQKF---CEGTILVAHNATFDVGFMNMNYSRNGLPII----- 721

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                  F L  L     I   + H A  D  A
Sbjct: 722 -TQPVVDTLEFARNLY-------------PEMKRFGLGQLTKKFQIGLEHHHMANFDAEA 767

Query: 184 T---LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T   L +       +   +  L +  +K              +   +      ++   ++
Sbjct: 768 TGRLLFVFLEELRTRNTGWTSLLELNDKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIV 827

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    + +Y   +     S      + L      +        +       ++       
Sbjct: 828 SF--GNVKYYAGLPRVPRSVLEANREGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDF 885

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + P    +           K   + L  L++    L     A  N  Y +    +  +
Sbjct: 886 IEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYRE 945

Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
           +              +       P  L   +   +D  L    F
Sbjct: 946 IIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEAFSF 989


>gi|281492785|ref|YP_003354765.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376437|gb|ADA65923.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis
           KF147]
          Length = 1638

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 105/404 (25%), Gaps = 35/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I+  + F       Y        +TGI
Sbjct: 595 TYVVFDVETTGLSAVHNDLIQIAATKM-HKGNPIDEFDEF---INPGYRLSEFTTELTGI 650

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E   +  +F       I+  +N  FD  +    + RN          
Sbjct: 651 TDDHVKNA-KPLYEVLTKFQKF---CEGTILVAHNATFDVGFMNMNYSRNGLPII----- 701

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                  F L  L     I   + H A  D  A
Sbjct: 702 -TQPVVDTLEFARNLY-------------PEMKRFGLGQLTKKFQIGLEHHHMANFDAEA 747

Query: 184 T---LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T   L +       +   +  L +  +K              +   +      ++   ++
Sbjct: 748 TGRLLFVFLEELRTRNTGWTSLLELNDKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIV 807

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    + +Y   +     S      + L      +        +       ++       
Sbjct: 808 SF--GNVKYYAGLPRVPRSVLEANREGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDF 865

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + P    +           K   + L  L++    L     A  N  Y +    +  +
Sbjct: 866 IEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLDKPVLATGNLHYLNPEDAIYRE 925

Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
           +              +       P  L   +   +D  L    F
Sbjct: 926 IIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEAFSF 969


>gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1410

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 69/475 (14%), Positives = 146/475 (30%), Gaps = 48/475 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G     D   +   V++ + ++ +++ E F                +TGI
Sbjct: 398 SFVVFDIETTGLSSINDNIIEIGAVKI-KNFQIVDTFETF---VNPQVHISKFITKLTGI 453

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E E   +   F       I+  +N  FD  + +        +       
Sbjct: 454 TDDMVKEYPSIE-EILPKFLDFIKDS---ILVAHNANFDVTFIKTKARNLGME------- 502

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L++ R                +   ++KL  +A   G+   N H A  D  A
Sbjct: 503 VDNPVLDTLELSR-------------HMYENLKNYKLDTVAQHLGVSLENHHRAVDDAKA 549

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +    I + K    E + +  +  + +  I       ++ +       R+   L++ 
Sbjct: 550 TAEIFIKSINKLKENGIEKVNEINDYLKNKVDIKKMPTYHVIILVKNQKGLRNLYELVSK 609

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN--KC 300
                 +++  I  +L   MR    + S      +F           +     + +  + 
Sbjct: 610 SNLEYFHRNPRIPKSLLSQMREGLLIGSACEQGEVFRGLISNLDDDKLQEIVSYYDYLEV 669

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             L   ++   +   +   +  +  + +  L +Q           +      +      +
Sbjct: 670 QPLGNNEFLIDKGEVKNKEELIKINKRIYDLGKQFKKPVVATCDVHFLDPWDNVYRKILM 729

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
           Y   F D DRQ       T  +++      F      E+       N       +     
Sbjct: 730 YGKGFKDADRQPPLYFRTT--DEMMREFDYFD----REIAKEIVIDN-----PNEIADSI 778

Query: 421 LEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
            +            IE  + +L+ L    + E  G++  + +   L + L  +I 
Sbjct: 779 EDVKPIPDGTFPPSIEGAEEELRKLTLNKAHEIYGEKLPDIVEKRLDKELNSIIN 833


>gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125]
 gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125]
          Length = 1433

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 69/475 (14%), Positives = 141/475 (29%), Gaps = 50/475 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G     ++  + A V+V +  E I+  E F              + +TGIT
Sbjct: 419 FVVFDVETTGLSAVYNKIIELAAVKV-KNGEIIDRFERFA---DPHEPLTNTIIELTGIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    VE +     H F       ++  +N  FD  +    F +            
Sbjct: 475 DDMLKGQPEVE-QVLNEFHAFI---GDAVLVAHNASFDMGFLNTGFQKMGL--------- 521

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G ++  ++D +       P             + +L  L     IE V+ H A  D  AT
Sbjct: 522 GEAKNPVIDTLELGRFLYPTL----------KNHRLNTLCKKFDIELVSHHRAIYDAEAT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L+W + +   +     +D  N N        Q  +  + ++      ++   L++   
Sbjct: 572 GHLLWRMVKDATERDILYHDQLNDNMGEGNFHRQRPSHCILLAQTQEGLKNLYKLVSMAH 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
               Y+   I  +     R    + S      +F     ++       +         + 
Sbjct: 632 VEYFYRTPRIPRSQLQKHREGILVGSGCDKGEVF--EGMMQKTPQEVEEIAKFYDYIEVQ 689

Query: 305 PIDYCKKEHFERWGIDHKRCLEN-LTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           P+   +    +      +   E    +++    L     A  N  Y      +  ++   
Sbjct: 690 PLANYEHLIEKELVKSREALQEIVANIVKLGEQLGKPVVATGNAHYLKEEDYIYRKILIA 749

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQD 419
                +              L  ++   +   L    F          +    +      
Sbjct: 750 SQGGANPLNKQT--------LPQVHFRTTSEMLEAFAF--LGEEKAKEIVVTNTNHIADQ 799

Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
             E       L   +IE    +++ +    + +  GD   E +   L + L+ +I
Sbjct: 800 IEEIHPIPDKLYTPKIEGADEEIRQMSYNRARKIYGDPLPEIVEARLEKELKSII 854


>gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 1438

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 61/476 (12%), Positives = 138/476 (28%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     DR  + + V++ +    I+  E F       +    +   +T I
Sbjct: 418 TYVVFDTETTGLSAIYDRVIELSAVKM-KNSNVIDQFEEF---IDPGFHLSEQTTNLTSI 473

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  +    F       I+  +N+ FD  +    + R+          
Sbjct: 474 TDEMVHGS-KSEEEVFKLFRDF---CEDAIVVGHNVTFDIGFMNTGYVRHGMPEI----- 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L + R +Y                  ++L  LA    +   + H A  D   
Sbjct: 525 -KNPIIDTLTLARFLY-------------PNMRGYRLNTLAKKFDVNLEHHHRAIYDAET 570

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L +L  +     +  +Y     + + +    ++  P   V                 
Sbjct: 571 TGHLNYLFLKDAEDRYGIVYHDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVS 630

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     +   +  + +               ++  +    K+        +
Sbjct: 631 LSNVDYFFRVPRVPRTQLEKFREGIIVGSACSSGEVFTAMMQKGMDEARKKAGFYDYLEV 690

Query: 304 MPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D     E L  +++    L+    A  +  Y +    +  ++  
Sbjct: 691 QPKRAYAPLIESHLISDEANLEEILTNIVKLGDELKKPVVATGDVHYLNPQDYIYRKILI 750

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                 +             +L  L+   ++  L +  F          +         +
Sbjct: 751 NSQGGANPLNRQ--------ELPDLHFLTTNEMLDDFAF--LGAEKAKEIVVTNTNRIAD 800

Query: 423 HR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   ++E  +++++      + ++ GD   + + + L   L+ +I
Sbjct: 801 DIDDVHPLKDRLYTPKMEGSEDEIKERTMTTAHQWYGDPLPKIVDDRLTTELKSII 856


>gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1402

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 72/477 (15%), Positives = 142/477 (29%), Gaps = 54/477 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G D   DR  +   V++    +  E    F      +         +TGI
Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKI-ENGQITEKFSTF---VDPEGKIPVRISELTGI 444

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +        S  I +F    +  ++  +N +FD  + +  +             
Sbjct: 445 YQDMVDKAPK----LSDAILEFEKFASGSVLVAHNAQFDIGFLKKAYQECGI-------- 492

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  +D +        D           +S KL  +A    +E  + H A +D   
Sbjct: 493 --IFDYTYIDTLELSRRLLTDL----------SSHKLNKVAEFLNVELKHHHRADSDAET 540

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242
           T  +   + E+            N  +     D+++ +    +        ++   L++ 
Sbjct: 541 TAGIFISLVERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY 600

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 YK   I  +L   ++    + S   +  +F +  E K    +  K         
Sbjct: 601 SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIE-KIAAFYDFLE 659

Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           +MP++       E +  D +   E N  +      L     A  +  Y    Q V  Q+ 
Sbjct: 660 IMPVENNSFLIREGYLKDEEDLREINKKIYNLGKKLGKLVVATSDAHYCHPHQRVLRQIL 719

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                               E    L    +D  L E    Y      + +  +      
Sbjct: 720 KHNQGYD-----------DVENDPQLYFRTTDEMLKEFD--YLGNESCYEVVVENTNKIA 766

Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  +            +IE  + ++ ++    + E  GD   E +   L + L  +I
Sbjct: 767 DMIEDIKPIPDETFPPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSII 823


>gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
 gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
          Length = 1437

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/475 (14%), Positives = 137/475 (28%), Gaps = 44/475 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + ++++D ET G     D   + A V++ R  E I+  E F       +      + +TG
Sbjct: 419 DTYIVFDVETTGLSAVYDTIIELAAVKI-RGGEIIDKFERFA---NPHHPLSATTIELTG 474

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            +    +  F    +  I+  +N  FD  +    + R          
Sbjct: 475 ITDDMVRDAP----DVIDVVRDFREWIDDDILVAHNASFDMGFLNVAYKRLLKVE----- 525

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  L     IE    H A  D  
Sbjct: 526 KAQNPVIDTLELGRFLY-------------PEFKNHRLNTLCKKFDIELTQHHRAIYDAE 572

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +      +  Y  +    + +    Q   P          +         
Sbjct: 573 ATGYLLLKMLK-DAAEKDIQYHDQLNENMGQSNAYQRSRPYHATLLAVNDTGLKNLFKLV 631

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H  Y   V     S   +  + L       R       ++                 
Sbjct: 632 SMSHIHYFYRVPRIPRSQLEKYREGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P +  +         D K   E   ++   T L ++              + + ++Y 
Sbjct: 692 VQPPEVYRHLLQLELVRDEKALKE---IITNITKLGEKLDKPVVATGNVHYLNDEDKIYR 748

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ---- 418
                               +L  ++   +D  L    F   A      +    ++    
Sbjct: 749 KILISSQGGANPLNRH----ELPKVHFRTTDEMLEAFSF-LGAEKAKEIVVANTQKVASM 803

Query: 419 -DWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
            + ++  K  L   +IE    +++ +S +      G+E  E +   + + L+ +I
Sbjct: 804 IEEIKPIKDDLYTPKIEGADQEIRDMSYQRARSIYGEELPEIVEARIEKELKSII 858


>gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
 gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
          Length = 1438

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/476 (12%), Positives = 139/476 (29%), Gaps = 48/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     DR  + + V++ +    I+  E F       +    +   +T I
Sbjct: 418 TYVVFDTETTGLSAIYDRVIELSAVKM-KNSNVIDQFEEF---IDPGFHLSEQTTNLTSI 473

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E E  +    F       I+  +N+ FD  +    + R+          
Sbjct: 474 TDEMVHGS-KSEEEVFKLFRDF---CEDAIVVGHNVTFDIGFMNTGYVRHGMPEI----- 524

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L + R +Y                  ++L  LA    +   + H A  D   
Sbjct: 525 -KNPIIDTLTLARFLY-------------PNMRGYRLNTLAKKFDVNLEHHHRAIYDAET 570

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L +L  +     +  +Y     + + +    ++  P   V                 
Sbjct: 571 TGHLNYLFLKDAEDRYGIVYHDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVS 630

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y   V     +   +  + +               ++  +    K+  +     +
Sbjct: 631 LSNVDYFFRVPRVPRTQLEKFREGIIVGSACSSGEVFTAMMQKGMDEARKKAGVYDYLEV 690

Query: 304 MPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P              D     E L  +++    L+    A  +  Y +    +  ++  
Sbjct: 691 QPKRAYAPLIESHLISDEANLEEILTNIVKLGDELKKPVVATGDVHYLNPQDYIYRKILI 750

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                 +             +L  L+   ++  L +  F          +         +
Sbjct: 751 NSQGGANPLNRQ--------ELPDLHFLTTNEMLDDFAF--LGAEKAKEIVVTNTNRITD 800

Query: 423 HR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
                   K  L   ++E  +++++      + ++ GD   + + + L   L+ +I
Sbjct: 801 DIDDVHPLKDRLYTPKMEGSEDEIKERTMTTAHQWYGDPLPKIVDDRLTTELKSII 856


>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
 gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
          Length = 1435

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 143/477 (29%), Gaps = 50/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV++D ET G     D   + A V++ +  + I+  E F       +      + +TG
Sbjct: 419 ETFVVFDLETTGLSAVYDTIIELAAVKI-KGGQIIDKFESFA---NPHHELSSTTIDLTG 474

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E    I ++       I+  +N  FD  +    + +   D+   + 
Sbjct: 475 ITDDMVKNAP----EVEEVIRKYHEWAGDHIMVAHNASFDMGFLYVCYKKYGIDTVHAT- 529

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L++ R ++                 + +L  LA   GIE    H A  D  
Sbjct: 530 ------IDTLELARMLH-------------PELKNHRLNTLAKKFGIELTQHHRAIYDTE 570

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + ++  +    LY  +  + +      +   P                    
Sbjct: 571 ATSYLLTHLLKEADQK-GILYHDQLNDYVGSGDAYKRSRPTHCTLLAQNDEGLKNLFKLV 629

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
            A H  Y   V     S   +  + L       +       ++  +    K         
Sbjct: 630 SASHINYFYRVPRIPRSLLQKHRKGLLVGSGCDKGEVFEAVMQKSMEEVEKTAQFYDYLE 689

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD-RFKAIYNKPYTSSSQDVDSQLY 361
           + P +            D     + +  L + +   +    A  N  Y   +  +  Q+ 
Sbjct: 690 VHPKEVYSHLIEREMIRDEWNLEDIIRKLVKISRKLEIPLVATGNVHYLDETDAIFRQVL 749

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH------TLSEK 415
            G     +     +        L  ++   ++  L    F        H      +L   
Sbjct: 750 IGSQGGANPLNRTK--------LPKVHFRTTNEMLDAFDF--LGSETAHELVVTNSLKIS 799

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  D ++  K  L   +IE    +++ L    + +  G    E +   + + L+ +I
Sbjct: 800 DMIDVVKPIKDELYTPKIEGADEEVRELSYNMAQQIYGSPLPEIVEARIEKELKSII 856


>gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 1402

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 143/476 (30%), Gaps = 52/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G D   DR  +   V++    E ++    F      +         +TGI
Sbjct: 389 TFVVVDIETTGFDNQKDRIIEIGAVKI-ENGEIVDRFSTF---VDPEGKIPIRISELTGI 444

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                          S  I +F    +  I+  +N +FD  + +  +             
Sbjct: 445 YQNMVDNAPK----LSDAILEFEKFCSGAILVAHNAQFDIGFLKRSYQECGL-------I 493

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L++ R +                 +S KL  +A    IE  + H A +D   
Sbjct: 494 FDYTYIDTLELSRRV-------------LTDLSSHKLNKVAEFLNIELKHHHRADSDAET 540

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242
           T  +   + EK            N  +     D+++ +    +        ++   L++ 
Sbjct: 541 TAKIFISLIEKLKSRGYKYLKELNTIETNTKADLKSHSYHATILVKNQQGLKNLYKLVSY 600

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 YK   I  ++   ++    L S   +  +F              K V L     
Sbjct: 601 SHLEYFYKRPRIPKSVLIQLKDGLILGSACESGEVF-RAIMEGKSDDELEKIVSLYDFLE 659

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +MP++       E +  D ++  +    + Q     ++     +  +         ++  
Sbjct: 660 IMPVENNSFLIREGYLKDEEQLRQINKKIYQLGKKLNKLVVATSDAHY---CHPHQRILR 716

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                              E    L    +D  L E  F Y  +   + +  +      +
Sbjct: 717 QILKHNQGYD-------DVENDPYLYFRTTDEMLKE--FEYLGKEAAYEVVVENTNKIAD 767

Query: 423 HRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
             +            +IE  + ++ ++    + E  G+   E +   L + L  +I
Sbjct: 768 MIEDVKPIPDETFPPKIEGAEEEIYNMTMKRAHEIYGEPLPEIVKQRLEKELNSII 823


>gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
 gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
          Length = 1463

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------R 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R      P+ L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNAL-A 815

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
              +   E  K  L    I++ +  +  L
Sbjct: 816 DIFEPV-EVVKGDLYTPFIDKAEETVAEL 843


>gi|326407708|gb|ADZ64779.1| DNA polymerase III subunit alpha, Gram-positive type [Lactococcus
           lactis subsp. lactis CV56]
          Length = 1638

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 104/404 (25%), Gaps = 35/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I+  + F       Y        +TGI
Sbjct: 595 TYVVFDVETTGLSAVHNDLIQIAATKM-HKGNPIDEFDEF---INPGYRLSEFTTELTGI 650

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E   +  +F       I+  +N  FD  +    + RN          
Sbjct: 651 TDDHVKNA-KPLYEVLTKFQKF---CEGTILVAHNATFDVGFMNMNYSRNGLPII----- 701

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                  F L  L     I     H A  D  A
Sbjct: 702 -TQPVVDTLEFARNLY-------------PEMKRFGLGQLTKKFQIGLEYHHMANFDAEA 747

Query: 184 T---LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T   L +       +   +  L +  +K              +   +      ++   ++
Sbjct: 748 TGRLLFVFLEELRTRNTGWTSLLELNDKLVSEDSYKKVRPKHVTLYAKTQEGLKNLFKIV 807

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    + +Y   +     S      + L      +        +       ++       
Sbjct: 808 SF--GNVKYYAGLPRVPRSVLEANREGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDF 865

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + P    +           K   + L  L++    L     A  N  Y +    +  +
Sbjct: 866 IEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYRE 925

Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
           +              +       P  L   +   +D  L    F
Sbjct: 926 IIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEAFSF 969


>gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
 gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
          Length = 1463

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +    +   R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVIDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQIKDTEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R      P+ L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNAL-A 815

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
              +   E  K  L    I++ +  +  L
Sbjct: 816 DIFEPV-EVVKGDLYTPFIDKAEETVAEL 843


>gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1450

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/479 (11%), Positives = 119/479 (24%), Gaps = 53/479 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D+  +   V++ +  E I++   F      +         +T 
Sbjct: 435 DTYVVFDIETTGFSPVNDKIIEIGAVKI-KNGEVIDNFSHF---VNPERSIPYVITELTS 490

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I          +E      + +F       ++  +N  FD  + +        D      
Sbjct: 491 INNDMVRDAETIEI----LLPKFMEFCADSVLVAHNAAFDTGFIKKNCRDLGIDFNY--- 543

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               S  D + + R +                    KL  +A   GI   N H A  D  
Sbjct: 544 ----SIMDTVPLARFLC-------------PDLKKVKLNLVAKHLGISLDNHHRAVDDAK 586

Query: 183 ATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            T  + +      K           N   +      +  T    +     A   N   + 
Sbjct: 587 CTAEILLKFFTMLKEDHSINTLKQLNDLFVSNFDIKKQPTYHAIILAKTQAGLKNLYKMI 646

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIK-EVHLNKC 300
             A H            S    + + L      +        L G     +K  +     
Sbjct: 647 STA-HIDNFQRRPRTPKSLIAEMREGLIIGSACEAGEVYKAVLDGKSDEELKAIMEFYDY 705

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             + PI        +    D          + ++     +                    
Sbjct: 706 LEIQPIANNLFLIEKGMVKDENEL----KTINKKIYDIGKECDKMTVATCDVHFMDPKDE 761

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                    +           ++   L    ++  L E    Y      + +  +     
Sbjct: 762 AFRRILMAGQGFK------DADKQPPLYFRTTEEMLKEFA--YLGSEIANEVVIENTNKI 813

Query: 421 LEHRK------KMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
            +               +IE  +  +++++        G+   E +   L + L  +I 
Sbjct: 814 ADSIDIIKPIPDETFPPKIEGAEEDIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 872


>gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1401

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/477 (15%), Positives = 144/477 (30%), Gaps = 57/477 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G + +     +   V++ +  EKI   E F      D     +   ITGI 
Sbjct: 388 FVVFDLETTGLNPSQHDIIEIGAVKI-KAGEKIAEFETF---IDIDKNVPAKITEITGIN 443

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                            I +F       ++  +N  FD  + R                 
Sbjct: 444 TSMLTGAPK----LKAAIERFIDFIGDGVLVAHNADFDYGFLRTA--------------- 484

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L++ R  Y          +    + ++KL  LA    +E  + H A AD  AT
Sbjct: 485 ----LQKLEINRKEYTVLDTLALSRALIKDSKNYKLNTLAEYFSVELDDHHRALADADAT 540

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS--RSNTALIAP 242
             ++  +     K         N       ID +++ P   V         ++   L++ 
Sbjct: 541 AEILKKLLAIIEKDDNSNLKDIN--DYISKIDWKDLRPFHAVLLAKNKKGLKNLYKLVSI 598

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +     R    + S   + +++ +    +    +  K   L     
Sbjct: 599 SHLDNFYRKPRILKSKLLQHRKGLLIGSACESGQIYQAFINNRPKNEIK-KIAKLYDYLE 657

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L P+   +    E+          N  + +    L     A  +  +      +  ++  
Sbjct: 658 LQPLANNEFLIPEKVNSREDLININKKIYQLGQELNKEVVATTDAHFLDPKDSIFREILQ 717

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEK 415
                              E    L    ++  L E               N    LS+ 
Sbjct: 718 AGQNF-----------ADAENQPPLYYRTTEEMLAEFSYFDGQTAKEIVIDNPNKILSKI 766

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           E    ++     L    IE  +++++ +    + +Y G E  + +I+ L + L  +I
Sbjct: 767 EA---IQPIPDGLYTPEIEGAEDEIREMAYQKAHQYYGQELPQLVIDRLEKELNSII 820


>gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B]
 gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum B str. Eklund 17B]
          Length = 1452

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/479 (14%), Positives = 139/479 (29%), Gaps = 53/479 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++ +  E I+      C          +   +T 
Sbjct: 437 DTFVVFDLETTGFSPVNDKIIEIGAVKI-KSGEIIDEFS---CFVNPQRDIPYKITQLTS 492

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I         V+E      + +F       +I  +N  FD  + +               
Sbjct: 493 IDNNMVKDADVIEN----ILPKFMEFCEDTVIVAHNAAFDTGFIKKNCRDL--------- 539

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N      +LD +       P+  +           KL  +A   GI   N H A  D  
Sbjct: 540 -NIRFDIPILDTVTLCRFLYPELKK----------VKLNIVAKFLGISLENHHRAVDDAK 588

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  ++    EK  + FE        +     +DI+       +      +         
Sbjct: 589 ATADILLKSFEKIEEDFEINDLKSLNDLFLSKVDIRKQPTYHIIILAKTQAGLKNLYKLI 648

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LNKCP 301
              H            +      + L      +        L+G     IKE+       
Sbjct: 649 SKSHIDNFFRRPRTPKTLLSEFREGLIIGSACEAGEVYKAVLEGRSDDEIKEIIEFYDYV 708

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            + PID       +    D +   + N  + R          A  +  + + + +   ++
Sbjct: 709 EIQPIDNNNFLIAKGSVKDEEELRDINRKIYRLGKECNKPTVATGDVHFLNPNDEAFRKI 768

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARN----FPHTLSE 414
                             +  +    L L  ++  L E  +  +  AR      P  +S+
Sbjct: 769 IMAGQGF-----------SDADNQPPLYLKTTEEMLKEFSYLGKDIAREVVIDNPKKISD 817

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                 L+         +IE  +  ++++    +    G+   E +   L + L  +I 
Sbjct: 818 SIG--VLKPIPDETYPPKIEGAEEDIKNMTLNKAHAIYGEVLPEVVQKRLDKELNSIIN 874


>gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
 gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
          Length = 1432

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/479 (13%), Positives = 149/479 (31%), Gaps = 50/479 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT  +V++D ET G     +   + A V++ +  E I+  E F              + +
Sbjct: 414 MTEEYVVFDVETTGLSAVYNTIIELAAVKI-KNGEIIDRFESFA---DPHEPLTNTIIEL 469

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT         V  E  +  H+F     T  +  +N  FD  +    + +        
Sbjct: 470 TGITDDMVKGQPEV-GEVLKDFHEFV---GTATLVAHNASFDMGFLNVGYQKIGL----- 520

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
               G++   ++D +       P+            + +L  L     IE V+ H A  D
Sbjct: 521 ----GDATNPVIDTLELGRFLYPEL----------KNHRLNTLCKKFDIELVSHHRAIYD 566

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  L+W +     +     +D  N +  +     Q  +    ++      ++   L+
Sbjct: 567 AEATGYLLWKMVRDANERNVTHHDQLNNHMGQGNFTRQRPSHCTILAQTQEGLKNLYQLV 626

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    H  Y         S   +  + L       +       ++       +       
Sbjct: 627 SM--SHVEYFFRTPRIPRSQLQKHRKGLLIGTACDKGEVFEGMMQKSPEEVEEIAKFYDY 684

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + P++  +    +    + +   E ++ + +    L     A  N  Y +    +  +
Sbjct: 685 LEIQPLENYQHLIEKELVKNDESLKEIVSNIVELGEKLDKPVVATGNAHYLNKEDAIYRK 744

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +        +              L  ++   +D  +    F     +    L  +  Q 
Sbjct: 745 ILIASQGGANPLNKQT--------LPPVHFKTTDEMIDAFAF--LGDDKAKKLVVENTQK 794

Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
             +           L   +IE   ++++ +    +    GD+  E +   + + L+ +I
Sbjct: 795 VADLVEEIHPIPDQLYTPKIEGADDEIREMSYSRARSIYGDDLPEIVEARIEKELKSII 853


>gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
 gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
          Length = 1444

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/475 (13%), Positives = 144/475 (30%), Gaps = 47/475 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  + A V++ +  + I+  E         +      + +T IT
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEE---MIDPGFPLSELTINLTHIT 476

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E E  R   QF    +  I+  +N+ FD  +  N + R+           
Sbjct: 477 DDMVHGS-KSEEEVFRLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 526

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                 + KL  LA    +   + H A AD  AT
Sbjct: 527 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 573

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + ++  K++      +  +++      +   P   +      +           
Sbjct: 574 GYLLYALEKEAAKMYNMTKLNQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSL 633

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            + +Y   V     S   ++ + L               ++        +        + 
Sbjct: 634 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQ 693

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P    +               + L  + +  +  ++   +    +     D    +Y   
Sbjct: 694 PPAVYQPLLEADLIKGESHLKDILQKIVKIGDELEKPVVVTGDVHYLDQHDA---IYRKI 750

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQDWL 421
                         + P+    ++   +   L +  +          L   +     DW+
Sbjct: 751 LIHSQGGANPLNHHSLPD----VHFRSTREMLDDFSW--LGEEKAQQLVVTNSNLIADWI 804

Query: 422 EH----RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
           +      K  L    +   + KL+    + + E  G+   E +   L + L+ +I
Sbjct: 805 DDNITPVKDKLYTPEVPGVEEKLKHDVMATAYELYGNPLPEIVAQRLDKELKSII 859


>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 1449

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/477 (14%), Positives = 140/477 (29%), Gaps = 50/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     DR  + A V+V +   +I+S E +                +T I
Sbjct: 428 TYVVFDVETTGLSAERDRLIEIAAVKV-KNGTEIDSFESY---INPQRPISELITRLTSI 483

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        + E E     + +    +  I+  +N +FD  +    F R   ++      
Sbjct: 484 TNDDVRDAPL-EKEVMTNFYNWLDKDD--ILVAHNAKFDLGFLDTCFERLGLEN------ 534

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L V RA              +  A    L +LA    +  V  H A  D  A
Sbjct: 535 KNNASIDTLFVSRA-------------ENKEAKRHGLSNLAKLYKVRLVQHHRAIYDTKA 581

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242
           T  +   + ++  +L    ++  ++    +L   ++ T    +        +    L++ 
Sbjct: 582 TAEIFVKMLDQLYELGIEYHNEIDEKIDLELAHKRSRTFPCSILVKNAKGLKDLFRLVSY 641

Query: 243 VAWHPRYK-DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
                       I  +L    R    + S      +F   + L          +      
Sbjct: 642 SCTKYLNSAKPTIPRSLLEQYREDLLIGSGNGDNEVF--EELLNSKEAKVENIIDFYDYI 699

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            + P  +           D+    E L  L +    +++        Y         +  
Sbjct: 700 EIQPKHHYANFIRNERISDNAELEEILKKLIKLAEKKEKIVVATGDCYYLDEYQHVYR-Q 758

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                         +               +D  L E    Y        +  +      
Sbjct: 759 ILRLTVKSNPGAHDL-------KPMATFLTTDEMLKEFS--YLDEQLREEIVIENTHKIN 809

Query: 422 EHR------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +        K  L    IE   +++++L    + +  G++  E +   L + L  +I
Sbjct: 810 DMIELVIPLKDKLYTPNIEGAADEVRNLSYDMAHKIYGEQLPEIVEKRLEKELSSII 866


>gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23]
 gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23]
 gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei LC2W]
 gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei BD-II]
          Length = 1444

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/475 (12%), Positives = 138/475 (29%), Gaps = 47/475 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  + A V++ +  + I+  E         +      + +T IT
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGKVIDQFEE---MIDPGFPLSELTINLTHIT 476

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E +  +   QF    +  I+  +N+ FD  +  N + R+           
Sbjct: 477 DDMVHGS-KSEVDVFKLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 526

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                 + KL  LA    +   + H A AD  AT
Sbjct: 527 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 573

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + ++  K++      +  +++      +   P   +      +           
Sbjct: 574 GYLLYALEKEAAKMYGMTTLNQLNDRVGAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSL 633

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            + +Y   V     S   ++ + L               ++        +        + 
Sbjct: 634 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSNGEVFTAMMQKGEAEARAKASFYDYLEVQ 693

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P+   +               + +  +    +  ++        +     D    +Y   
Sbjct: 694 PLPVYQPLIEAGLIKGEAHLKDIIQKIINIGSELEKPVVATGDAHYLDQHDA---IYRQI 750

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH- 423
                         + P+    ++   +   L +  +        H L            
Sbjct: 751 LIHSQGGANPLNRHSLPD----VHFRSTSEMLTDFSW--LGEEKAHELVVDNSNLIANWV 804

Query: 424 ------RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
                  K  L    +   +  L+    + + E  GD   + +   L + L+ +I
Sbjct: 805 DDDITPVKDKLYTPEVPGVEENLKHDVMTTAHELYGDPLPDIVAQRLDKELKSII 859


>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1433

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 139/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F +      +  +N  FD  +    F +   D      
Sbjct: 472 ITDDMLTDAP----EVGEVFKKFQAWMGDHTLVAHNASFDMGFLNVGFKKCGLD------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KPKNPVIDTLELAR-------------FLFPDMKNHRLNTLCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT   L  +++E   K FEY     +             + +  ++      ++   LI+
Sbjct: 569 ATGYLLAKMLKEVIEKGFEYHDQLNDSMGQGDSYKRGRPSHVTLLATSDEGLKNLYKLIS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   I  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHVNYFYRVPRIPRSLLKKHREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y +    +  ++
Sbjct: 687 EVMPPEVLRHLVELELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLNPEDAIYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     +    +D  L    F          +     Q  
Sbjct: 747 ---LISSQGGANPLNRHSLPP-----VYFRTTDEMLDCFSF--LGEEKAKEIVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGEVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 1449

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/474 (16%), Positives = 142/474 (29%), Gaps = 44/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     DR  + A V+V +   +I+S E +                +T I
Sbjct: 428 TYVVFDVETTGLSAERDRLIEIAAVKV-KNGSEIDSFESY---INPRRPISELITRLTSI 483

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E     + +    +  I+  +N +FD  +    F R    +      
Sbjct: 484 TDDDVKDAP-FEEEVMTNFYNWLDEDD--ILVAHNAKFDLGFLDKSFERLGLKN------ 534

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L + RA              +  A    L +LA    +  V  H A  D  A
Sbjct: 535 KNNASIDTLFISRA-------------ENKEAKRHGLSNLAKLYKVRLVQHHRAIYDTKA 581

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +   + ++  KL    ++  ++    KL   ++ T    +         +   I   
Sbjct: 582 TAEIFVKMLDQLYKLGIEYHNEIDEKIDLKLAHKRSRTFPCSILVKNAKGLKDLFRIVSY 641

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           +              S   +  +DL             + L          +       +
Sbjct: 642 SCTDYLSSGKPTIPRSLLEQYRKDLLIGSGNSENEVFEELLNSKEDKVEGIIDFYDYIEI 701

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK-----AIYNKPYTSSSQDVDS 358
            P ++           D     E L  L      +D+         Y   Y    + +  
Sbjct: 702 QPKNHYHSFIRSERITDEAELEELLKKLIDIAKKKDKIVVATGDCYYLDEYQHVYRQILR 761

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
                     D + M   L T  E++      F D +L E        N        +  
Sbjct: 762 LTVKSNPGARDIKPMATFLTT--EEMLN-EFSFLDEKLRE---EIVIDNTHKI---SDLI 812

Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           + +   K  L    IE   ++++ L    + +  GD+  E +   L + L  +I
Sbjct: 813 ELVVPLKNKLYTPNIEGAADEVRDLSYSMAHKIYGDKLPEIVEKRLEKELASII 866


>gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1536

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 110/393 (27%), Gaps = 36/393 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +++V++D ET G      +  +   VRV    E +     F      +     +   +T 
Sbjct: 500 DNYVVFDIETTGLSNLTCKIIEIGAVRV-EHGEVVSRFSEF---INPEVPIPFKITELTS 555

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT        V+E E   +  +F       ++  +N  FD  + +    R   D      
Sbjct: 556 ITDAMVEDAPVIE-EILPKFREF---CGDAVLVAHNADFDTGFIKMECERQKLDW----- 606

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               +  D + + +                 G + FKL  +A A G+   + H A  D  
Sbjct: 607 --EFTYVDTVAMAQ-------------MLLPGLSRFKLDTVAKAVGVPLEHHHRAVDDAE 651

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
            T  +     E   +      D  NK        I+ M    HV  +         L   
Sbjct: 652 CTAWIFVKFVEMLKERNILDLDALNKEGSVNQNAIRKMKS-HHVIILAKNEEGRVNLYRC 710

Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300
           V+  H +Y +       S      + L               L+G     I + V+    
Sbjct: 711 VSESHLKYFNRQAKLPRSFIEEHREGLIIGSACVAGELYQALLRGAPDAEIARIVNFYDY 770

Query: 301 PILMPIDYCKKEHFERWG---IDHKRCLENLTLLRQ--QTNLRDRFKAIYNKPYTSSSQD 355
             + P+        +         +   E    + +  +   +               + 
Sbjct: 771 LEIQPLGNNAFLIEDEKNPAVTCMEDLQEINRKIVKLGEQFHKPVVATCDVHFMDPEDEI 830

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLN 388
               +  G       +     LRT  E L+   
Sbjct: 831 YRRIIMAGKKFADADKQEPLFLRTTEEMLAEFE 863


>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 1438

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/476 (12%), Positives = 129/476 (27%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G  V  ++  + A V++    ++I+    F                +T I
Sbjct: 420 TYVVFDIETTGLSVTQNKIIEIAAVKMRE-GKEIDRYATF---VNPHERIPYHIQQLTNI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        +    + +F       I+  +N RFD  +                  
Sbjct: 476 NDDMVKDAP----DVEPVLKRFVEFAEDAILVAHNARFDYDFVNAKLKELGLPIMEN--- 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R                    + +L  LA    +   N H A  D  A
Sbjct: 529 ---PVLDTLELAR-------------MLFPTMKNHRLNTLAAKYKVSLENHHRAIDDTVA 572

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              ++  + +   K+  Y    R  +++ K +           +      ++   LI+  
Sbjct: 573 LGEILNGLLDDAVKIEGYKTLDRLNDKVGKDLSNARPFHCGIYALNPVGKKNLFKLIS-- 630

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S  + + + L  +   ++       L   V              +
Sbjct: 631 LSHTEYFKRVPCIPKSKLVELREGLLILSGCEKGEFFETVLNKSVEEAEAVAEFYDVLEI 690

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD-RFKAIYNKPYTSSSQDVDSQLYD 362
            P+        +      +     +  + +     D    A  N  Y      +   +  
Sbjct: 691 QPLTMYMHLVEKGLVGSTEELQTAIRKIVEIGMKLDKPVVATGNVHYLDPKDKLFRDITI 750

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                               +    +   ++  L E  F    +     +    +     
Sbjct: 751 HGITG--------FSPLKEVRKPDAHFRTTEEMLEEFAF--LGQEKAWEVVVTNTSALAD 800

Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
            +   E     L    IE    +++      +    G+E  E ++  L + L+ +I
Sbjct: 801 RFEEIELFPDKLFTPIIEGADEEIRQKCYDTAKSIYGEELPEVIVKRLEKELEPII 856


>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
 gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
          Length = 1433

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 137/478 (28%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F +      +  +N  FD  +    F +   D      
Sbjct: 472 ITDDMLTDAP----EVGEVFKKFEAWMGDHTLVAHNASFDMGFLNVGFKKCGLD------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KPKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHVTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               H  Y   V     S   +  + L       +       ++       +        
Sbjct: 629 Y--SHLNYFYRVPRVPRSLLKKYREGLIVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F          +     Q  
Sbjct: 747 ---LISSQGGANPLNRHSLPP-----VHFRTTDEMLDCFSF--LGEEKAKEIVVTNTQKV 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S E      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYEMARSIYGEELPEIVEARLEKELKSII 854


>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1410

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/474 (14%), Positives = 151/474 (31%), Gaps = 44/474 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D   +   V++ +  + +++ E F                +TG
Sbjct: 397 DSFVVFDIETTGLSSINDSIIEIGAVKI-KDCQIVDTFETF---VNPQIHISNFITKLTG 452

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT     R      E   +  +F        +  +N  FD  + +        +      
Sbjct: 453 ITDDMVKRYP-PIDEVLPKFLEFIK---GSTLVAHNANFDVTFIKTKAKNLGIE------ 502

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                +   ++KL  +A   G+   N H A  D  
Sbjct: 503 -VDNPVLDTLELSR-------------HMYENLKNYKLDTVAQHLGVSLENHHRAVDDAR 548

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  +    I + K    E + +  +  + +  I       ++ +       R+   L++
Sbjct: 549 ATAEIFLKSINKLKENGIEKVNEINSYLKNKVDIKKMPTYHVIILVKNQKGLRNLYELVS 608

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV--PIKEVHLNK 299
                  +++  I  +L   MR    + S      +F           +   I+     +
Sbjct: 609 KSNLEYFHRNPRIPKSLLTQMREGLLIGSACEQGEVFRGLISNFDDDKLQEIIRYYDYLE 668

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              L   ++   +       +  +  + +  L ++           +             
Sbjct: 669 IQPLGNNEFLIDKGEVNSKEELIKINKRIYELGKRFKKPVVATCDVHFLDPWDDVYRKIL 728

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +Y   F D DRQ       T  E++ +    F ++   E+       + P+ +   E  +
Sbjct: 729 MYGKGFKDADRQPPLYFRTT--EEMLSEFNYFDEKTAKEIVI-----DNPNKIV--ELIE 779

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
            ++          IE  + +L+ L    + E  G++  E +   L + L  +I 
Sbjct: 780 DVKPIPDGTFPPSIEGAEEELRKLTLNKAHEIYGEKLPEIVEKRLDKELNSIIN 833


>gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum
           DSM 5476]
 gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum
           DSM 5476]
          Length = 1453

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 141/478 (29%), Gaps = 56/478 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   +R  +   V + +  E  E  + F      +    P+   +TGIT
Sbjct: 434 FVVFDTETTGLNAQTERLTEIGAVVL-KNGEITEEYDEF---VNPEKPIPPKITELTGIT 489

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E E   R   FF+     I+  +N  FD  +      R+           
Sbjct: 490 DSMVADAP-TEKEALER---FFAFAKGRILIAHNANFDMGFLAAAAARHGLSC------- 538

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L ++R                    + KL  +     +   N H A  D    
Sbjct: 539 DFTYIDTLPIVRT-------------LFPTLRNHKLDTVVKHLKLGDFNHHRACDDAKIL 585

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV--SGMFGASRSNTALIAP 242
             +   + ++  +           N L    D + +     +         ++   L++ 
Sbjct: 586 GLVFAEVAKRLIQEKGVADIADINNCLGGAKDYKKLRTYHQIILVKNNTGLKNLYKLVSY 645

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  YK   +  +     R    + S   A  L+ +  + K    +  K         
Sbjct: 646 GHLNYFYKKPRVLKSDLVKHREGLLIGSACEAGELYQAVADGKSWEDL-CKIADFYDYLE 704

Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + PI             D +R  E N T+++   +L     A  +  +  ++      + 
Sbjct: 705 IQPIGNNAFMIRSGLVPDEERLKEYNRTIVKLGEHLGKPVVATCDVHFQDAADANYRAII 764

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                               +  + L L  +D  L E    Y      + +         
Sbjct: 765 MAALKFK-----------DADNQAPLYLRTTDEMLKEFA--YLGEEKAYEVVVTNTNKIA 811

Query: 422 EHRKKML-------TRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  +  L          +IE  +  LQ +    + +  GD   E + N L   L  +I
Sbjct: 812 DMVEGDLRPIPKGTYTPKIEGAEEDLQRITWQRAKDMYGDPVPELVKNRLDRELSSII 869


>gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
 gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
          Length = 1463

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/452 (12%), Positives = 114/452 (25%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPISAFTTDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +      +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVRNA-KPLKQVLEEFQEF---CQDAVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +    L      +          +   +          
Sbjct: 577 TGRLLFIFIKDVAEKHGVTNLAKLNLDLISPDSYKKARVKHATIYVKNQNGLKNMFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTQYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357
           MP         +    D       +  L +      +  L                + + 
Sbjct: 697 MPPAIYAPLIAKEQVKDMDELQTIIKSLIEVGDRLGKPVLATGNVHYLEPEEEIYREIIV 756

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411
             L  G   +      +      P  L   +   ++  L E  F      R       + 
Sbjct: 757 RSLGQGAIINRTIGHGE---NAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIENTNA 813

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           L   E  + +E  K  L    I++ +  +  L
Sbjct: 814 L--AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
 gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
          Length = 1428

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/479 (13%), Positives = 134/479 (27%), Gaps = 54/479 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D   + A V++ +  E ++  E F       +      + +TG
Sbjct: 412 DTFVVFDVETTGLSAVYDTIIELAAVKI-KGGEIVDRFESFA---NPHHALSQTTIDLTG 467

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E +  +  F +     I+  +N  FD  +    F R  Y+      
Sbjct: 468 ITDDMVNDAP----EVADVLKDFHTWMGNDILVAHNASFDMGFLNQGFQRIDYE------ 517

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 518 KASNPVVDTLELAR-------------FLLPELRNHRLNTLCKHLDIELTQHHRAIYDAE 564

Query: 183 ATLA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT   L  L++    K      +  N                  ++      ++   L++
Sbjct: 565 ATGYLLWKLVQRLVEKEISNHLELNNHMGENNAYQRSRPYHCTLIAQTEEGLKNLYKLVS 624

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               H  +   V     S   +  + +       +       ++       +        
Sbjct: 625 R--AHIDFFYRVPRLPRSVLQKHREGILVGTACDKGEVFETMMQKSEEEAEQVADFYDYI 682

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ--QTNLRDRFKAIYNKPYTSSSQDVDSQ 359
            + P +       +    +  + L+ L  L        +               +     
Sbjct: 683 EVQPPENYTHLIEKDLVQNESQILDILRKLVNLGDKMKKTVVATGNVHYLHEHDKQYRQI 742

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           L      +   +           +L       +   +    F +      + +     Q 
Sbjct: 743 LIGSQAGNPLSRH----------KLPDTPFRTTTEMIN--CFHFLGEKKANEIVVDNTQK 790

Query: 420 WLEHR------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
             +        K  L    IE  + +++ L    + E  G+   + +++ L + L+ +I
Sbjct: 791 LTDSIEEISPVKDGLFTPNIEGAEQEMRDLCYNKAKEVYGEPVPQIVVDRLEKELESII 849


>gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG]
 gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1444

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/475 (13%), Positives = 144/475 (30%), Gaps = 47/475 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  + A V++ +  + I+  E         +      + +T IT
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEE---MIDPGFPLSELTINLTHIT 476

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E E  R   QF    +  I+  +N+ FD  +  N + R+           
Sbjct: 477 DDMVHGS-KSEEEVFRLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 526

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                 + KL  LA    +   + H A AD  AT
Sbjct: 527 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 573

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + ++  K++      +  +++      +   P   +      +           
Sbjct: 574 GYLLYALEKEAAKMYNMTKLNQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSL 633

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            + +Y   V     S   ++ + L               ++        +        + 
Sbjct: 634 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQ 693

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P    +               + L  + +  +  ++   +    +     D    +Y   
Sbjct: 694 PPAVYQPLLEADLIKGESHLKDILQKIVKIGDELEKPVVVTGDVHYLDQHDA---IYRKI 750

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQDWL 421
                         + P+    ++   +   L +  +          L   +     DW+
Sbjct: 751 LIHSQGGANPLNRHSLPD----VHFRSTREMLDDFSW--LGEEKAQQLVVTNSNLIADWI 804

Query: 422 EH----RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
           +      K  L    +   + KL+    + + E  G+   E +   L + L+ +I
Sbjct: 805 DDNITPVKDKLYTPEVPGVEEKLKHDVMATAYELYGNPLPEIVAQRLDKELKSII 859


>gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
 gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
          Length = 1463

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/449 (13%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TYDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R      P+ L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIENPNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031]
 gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae P1031]
          Length = 1463

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/452 (12%), Positives = 115/452 (25%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       Y        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGYPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ------TNLRDRFKAIYNKPYTSSSQDVD 357
           MP         +    D +     +  L +         L                + + 
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKNLIEIGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411
             L  G   +      +      P  L   +   ++  L E  F      R       + 
Sbjct: 757 RSLGQGAMINRTIGHGE---HAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNA 813

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           L   E  + +E  K  L    I++ +  +  L
Sbjct: 814 L--AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
 gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
          Length = 1463

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAIINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPIEVVKGDLYTPFIDKAEETVAEL 843


>gi|227529104|ref|ZP_03959153.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
 gi|227350948|gb|EEJ41239.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
          Length = 1442

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/476 (12%), Positives = 133/476 (27%), Gaps = 45/476 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +VI+D ET G     D+  + +  ++ +  E +E  + F       +    +   +T 
Sbjct: 423 QTYVIFDVETTGLSAIYDKVIELSASKM-KDGEVLERFDEF---IDPGFPLSEQTTNLTS 478

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +        E E  R    F      CII  +N+ FD  +    + R+  +      
Sbjct: 479 ITDEMVQGS-KSEEEVFRMFRDF---CEGCIIAGHNVSFDMGFMNTGYRRHNMEEI---- 530

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + R +Y                  ++L  L+    +   + H A  D  
Sbjct: 531 --TAPVIDTLPLARFLY-------------PHMRGYRLNTLSKKFKVALEHHHRANYDAE 575

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+ +  +   K +           +      ++  P          +         
Sbjct: 576 ATGKLLHIFLKDAEKRYGIKLISDLNKHMTDNDAYRHARPFHVTILAQTQAGLKNLYKLV 635

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              + +Y   V     S   +  Q L               ++       ++        
Sbjct: 636 SLSNVKYFARVPRIPRSVLTKFRQGLLLGTACSSGEVFTAMMEKGFAEAERKAKYYDFIE 695

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P    +    ++   D      +L  + +                             
Sbjct: 696 VQPKPNYQPLLEQKVIAD----DAHLEDILKNMVKLGENLKKPVVATGDVHYLDAHDAIY 751

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEKQD 419
                  +   + + RT   +   ++   +D  L E  F   A      +   + +    
Sbjct: 752 RKILINSQGGANPLNRT---RRPDVHFRTTDEMLNEFSF-LGADKAHQIVVTNTHQVADM 807

Query: 420 WLEHR---KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
             +     K  L    ++  + ++Q      + ++ GD   + + + +   L  ++
Sbjct: 808 IDDGICPVKDKLYTPHMKGAEQEIQDRTWDTAKKWYGDPLPKIVQDRVDLELNSIV 863


>gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
           6725]
          Length = 1402

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/477 (15%), Positives = 144/477 (30%), Gaps = 54/477 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G D   DR  +   V++    +  E    F      +         +TGI
Sbjct: 389 TFVVVDIETTGFDSQRDRIIEIGAVKI-ENGQITERFSTF---VDPEGKIPVRISELTGI 444

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +        S  I +F    +  ++  +N +FD  + +  +             
Sbjct: 445 YQDMVDKAPK----LSDAILEFEKFASGSVLVAHNAQFDIGFLKKAYQECGI-------- 492

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  +D +        D           +S KL  +A    IE  + H A +D   
Sbjct: 493 --IFDYTYIDTLELSRRLLTDL----------SSHKLNKVAEFLNIELKHHHRADSDAET 540

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242
           T  +   + E+            N  +     D+++ +    +        ++   L++ 
Sbjct: 541 TAGIFISLVERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY 600

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 YK   I  +L   ++    + S   +  +F +  E K    +  K         
Sbjct: 601 SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIE-KIAAFYDFLE 659

Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           +MP++       E +  D +   E N  +      L     A  +  Y    Q +  Q+ 
Sbjct: 660 IMPVENNSFLIREGYLKDEEDLREINRKIYNLGKKLGKLVVATSDAHYCHPHQRILRQIL 719

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                               E    L    +D  L E  F Y   +  + +  +      
Sbjct: 720 KHNQGYD-----------DVENDPLLYFRTTDEMLKE--FEYLGSDSCYEVVVENTNKIA 766

Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  +            +IE  + ++ ++    + E  GD   E +   L + L  +I
Sbjct: 767 DMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSII 823


>gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus casei str. Zhang]
          Length = 1444

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/475 (12%), Positives = 139/475 (29%), Gaps = 47/475 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  + A V++ +  + I+  E         +      + +T IT
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGKVIDQFEE---MIDPGFPLSELTINLTHIT 476

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E +  +   QF    +  I+  +N+ FD  +  N + R+           
Sbjct: 477 DDMVHGS-KSEVDVFKLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 526

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                 + KL  LA    +   + H A AD  AT
Sbjct: 527 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 573

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + ++  K++      +  +++      +   P   +      +           
Sbjct: 574 GYLLYALEKEAAKMYGMTTLNQLNDRVGAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSL 633

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            + +Y   V     S   ++ + L               ++        +        + 
Sbjct: 634 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSSGEVFTAMMQKGEAEARAKASFYDYLEVQ 693

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P+   +               + +  + +  +  ++        +     D    +Y   
Sbjct: 694 PLPVYQPLIEAGLIKGEAHLKDIIQKVIKIGSELEKPVVATGDAHYLDQHDA---IYRQI 750

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH- 423
                         + P+    ++   +   L +  +        H L            
Sbjct: 751 LIHSQGGANPLNRHSLPD----VHFRSTSEMLTDFSW--LGEEKAHELVVDNSNLIANWV 804

Query: 424 ------RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
                  K  L    +   +  L+    + + E  GD   + +   L + L+ +I
Sbjct: 805 DDDITPVKDKLYTPEVPGVEENLKHDVMTTAHELYGDPLPDIVAQRLDKELKSII 859


>gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1402

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/477 (15%), Positives = 146/477 (30%), Gaps = 54/477 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G D   D+  +   V++    + IE    F      +         +TGI
Sbjct: 389 TFVVVDIETTGFDSQRDKIIEIGAVKI-ENGQIIERFSTF---VDPEGKIPVRISELTGI 444

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +   +       I +F    +  I+  +N +FD  + +  ++            
Sbjct: 445 YQDMVDKAPKLN----DAILEFEKFASGSILVAHNAQFDIGFLKKAYHECGI-------- 492

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  +D +        D           +S KL  +A    +E  + H A +D   
Sbjct: 493 --IFDYTYIDTLELSRRLLTDL----------SSHKLNKVAEFLNVELKHHHRADSDAET 540

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242
           T  +   + EK            N  +     D+++ +    +        ++   L++ 
Sbjct: 541 TAGIFTSLLEKLKLRGYKWLKELNSIESNTKADLKSHSYHATILVKNQQGLKNLYKLVSY 600

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 YK   I  +L   ++    + S   +  +F +  E K    +  K         
Sbjct: 601 SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIE-KIAAFYDFLE 659

Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           +MP++       E +  D +   E N  +      L     A  +  Y    Q +  Q+ 
Sbjct: 660 IMPVENNSFLIREGYLKDEEDLREINRKIYNLGKKLGKLVVATSDAHYCHPHQRILRQIL 719

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                               E    L    +D  L E  F Y   +  + +  +      
Sbjct: 720 KHNQGYD-----------DVENDPLLYFRTTDEMLKE--FEYLGSDSCYEVVVENTNKIA 766

Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  +            +IE  + ++ ++    + E  GD   E +   L + L  +I
Sbjct: 767 DMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSII 823


>gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 616

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 57/188 (30%), Gaps = 25/188 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     DR  +   V++    E+I     F        L  P    ITGI
Sbjct: 33  TFVVVDLETTGLSAHEDRIIEIGAVKI-HGGEEISRFSTF---VDPGRLIPPLITNITGI 88

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +              ++ +  F       ++  +N RFD  + +    R           
Sbjct: 89  SDDDVNGAPKE----AQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAH--------- 135

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +   +  +  +    +         SFKL  LA          H A  D  A
Sbjct: 136 --------ITWPQPTHLCTLVLARTMLDRCAVGSFKLSSLARHFHATTTPTHRALDDALA 187

Query: 184 TLALVWLI 191
           T+ +   +
Sbjct: 188 TVTVFHGL 195


>gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum NCTC 2916]
 gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum NCTC 2916]
          Length = 1432

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/481 (12%), Positives = 134/481 (27%), Gaps = 58/481 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++  + + ++    F            +   +T 
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKI-EKGKIVDRFSEF---VNPKRTIPDKITELTS 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++    + + +F       ++  +N  FD  +          +      
Sbjct: 472 ITDNMVDDKETID----KILPRFIDFIGDSVVVAHNASFDVSFINKNCKDLKIEF----- 522

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              NS  D + + R                      KL  +A   GI   N H A  D  
Sbjct: 523 --ENSVMDTVTLSR-------------FLFPELKRHKLNVIAKHLGISLENHHRAVDDAK 567

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  ++    E   +         NK  L  +   +  T  + +         N   +  
Sbjct: 568 ATADILLKSFEMLREKEIITLHSLNKEFLGNINIKKEPTHHLIILAKNAVGLKNLYKLVS 627

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y         S      + L      +      + LKG     +K +       
Sbjct: 628 K-SNLEYFFKRPRMAKSLINEYKEGLIIGSACEAGQIYKEILKGKTKEELKNMI------ 680

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
                        +   +++  ++N ++  ++       K      + +        ++ 
Sbjct: 681 -----DFYDYLEIQPLGNNEFLVKNGSVKDEKELEEINKKICELGEFYNKPVVATCDVHF 735

Query: 363 GFFADVDRQIM----DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SE 414
                   + +         +  +    L    ++  L E  F Y        +    + 
Sbjct: 736 LDEEHEVFRRILMSGQGF--SDADNQPPLYFRTTEEMLKE--FEYLGEEKAKEVVIYNTN 791

Query: 415 KEKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
           K      E     +     +IE  +  ++ ++ E      GD   E +   L + L  +I
Sbjct: 792 KIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHSIYGDPLPEIVEKRLTKELNSII 851

Query: 469 P 469
            
Sbjct: 852 N 852


>gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 1447

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/476 (11%), Positives = 126/476 (26%), Gaps = 47/476 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     DR  Q + V++ +  E ++  + F       +    +   +T IT
Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKM-QDGEVLDHFDQF---IDPGFHLSEQTTALTSIT 482

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E E  +    F    +  ++  +N+ FD  +    + R+           
Sbjct: 483 DDMVQGS-KTEEEVLKLFDDF---ADGSLLAGHNVSFDMGFMNVAYERHGMG------QI 532

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R                     ++L  L+    +   + H A  D  AT
Sbjct: 533 KQPVIDTLPLAR-------------FLHPDFRGYRLNTLSKRFKVSLEHHHLASYDSEAT 579

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L+ +  +   + +   Y       +      ++  P          +           
Sbjct: 580 GHLLAIFLKDAEERYGVTYVDDLNKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSL 639

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            +  Y   V     S   R  + L               ++       +         + 
Sbjct: 640 SNVEYFARVPRIPRSVLNRYREGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYDYIEVQ 699

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P       +             +L  + +                  +            
Sbjct: 700 PK----PNYAPLLESGVITDQAHLEDILKNMVKLGSALNKPVVATGDAHYINPEDAIYRK 755

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKEK 417
                +   + + RT   +   ++   +D  L            +    N    L     
Sbjct: 756 ILINSQGGANPLNRT---ERPDVHFRTTDEMLDLFSFLGEDVAKQIVVDN--THLVADMV 810

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVIP 469
            D +   K  L    +E  + ++Q    + + E+ GD   + + + +   L  ++ 
Sbjct: 811 DDGIRPVKAGLYPPHMEGAEQEIQDRTWTTAKEWYGDPLPQLVKDRVELELNSIVS 866


>gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
 gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
          Length = 1447

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/476 (11%), Positives = 126/476 (26%), Gaps = 47/476 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     DR  Q + V++ +  E ++  + F       +    +   +T IT
Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKM-QDGEVLDHFDQF---IDPGFHLSEQTTALTSIT 482

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E E  +    F    +  ++  +N+ FD  +    + R+           
Sbjct: 483 DDMVQGS-KTEEEVLKLFDDF---ADGSLLAGHNVSFDMGFMNVAYERHGMG------QI 532

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R                     ++L  L+    +   + H A  D  AT
Sbjct: 533 KQPVIDTLPLAR-------------FLHPDFRGYRLNTLSKRFKVSLEHHHLASYDSEAT 579

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L+ +  +   + +   Y       +      ++  P          +           
Sbjct: 580 GHLLAIFLKDAEERYGVTYVDDLNKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSL 639

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            +  Y   V     S   R  + L               ++       +         + 
Sbjct: 640 SNVEYFARVPRIPRSVLNRYREGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYDYIEVQ 699

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P       +             +L  + +                  +            
Sbjct: 700 PK----PNYAPLLESGVITDQAHLEDILKNMVKLGSALNKPVVATGDAHYINPEDAIYRK 755

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKEK 417
                +   + + RT   +   ++   +D  L            +    N    L     
Sbjct: 756 ILINSQGGANPLNRT---ERPDVHFRTTDEMLDLFSFLGEDVAKQIVVDN--THLVADMV 810

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVIP 469
            D +   K  L    +E  + ++Q    + + E+ GD   + + + +   L  ++ 
Sbjct: 811 DDGIRPVKAGLYPPHMEGAEQEIQDRTWTTAKEWYGDPLPQLVKDRVELELNSIVS 866


>gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
 gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
          Length = 1463

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 115/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVEAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL---SEKEK 417
                               P  L   +   ++  L E  F        H L   +    
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAF--LGEELAHKLVIDNPNAL 814

Query: 418 QDWL---EHRKKMLTRSRIEEYKNKLQSL 443
            +     E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
 gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
          Length = 1463

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKNTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEAAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIENTNVL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|78044072|ref|YP_360592.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996187|gb|ABB15086.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1407

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 71/475 (14%), Positives = 138/475 (29%), Gaps = 50/475 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V +D+ET G     D   +   V++    E  E+  V             +   +TGIT
Sbjct: 394 IVAFDFETSGLSSQRDEIIEIGAVKI-FDGEIKETFSVL---IRPQKPISAKISELTGIT 449

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                ++G+   E    I +F    +  I+  +N  FD  + R    R  ++        
Sbjct: 450 NDLLEKEGLDFGEA---IEKFLRFCDGSILLAHNAAFDYGFLRQALKRLGHE-------R 499

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S  D L ++R                    + KL+ +     +   N H A AD YA 
Sbjct: 500 KFSVVDNLALVRI-------------LFPELKNHKLKTITEHLEVSLNNHHRALADSYAL 546

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +   +  +  +   Y  D   K     + D      +  +        +   LI    
Sbjct: 547 AEVFLKLLPRLFERGLYSLDDLAKINYNYINDRSKTYHVSILVKNQEGLYNLYRLITLSH 606

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
               ++   I  +     R    + +   A  LFT+  E +    +       +   I+ 
Sbjct: 607 LKYFHRHPRIPKSELMRYREGLLIGTACEAGELFTALLENQPESRILEIARFYDYFEIMP 666

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
             +       +R   + +    N  ++     L     A  +  +     ++  ++    
Sbjct: 667 KGNNAFLLRNQRLKSEQELEELNRKIIALGEKLNKPVVATGDVHFLEPEDEIYRRILQKG 726

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQDW 420
                            E    + L  ++  L E    Y  +   + +      K  +  
Sbjct: 727 QGYD-----------DAELQPPIYLKTTEEMLKEFA--YLGQEKAYEVVVDNPRKIAEQI 773

Query: 421 LEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
            E            IE    ++  +    + E  GD   E +   L   L  +I 
Sbjct: 774 EEIKPIPDEFYPPIIEGADRQIYEMTYQRAHELYGDPLPEIVEKRLKRELDAIIN 828


>gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1412

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/473 (14%), Positives = 142/473 (30%), Gaps = 46/473 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+++D ET G +   D   +   +++    E +E+   F                +TGI
Sbjct: 401 TFIVFDLETTGLNPKEDEIIEIGAIKMKGN-EILETFSSF---VKPQKELSSLITSLTGI 456

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T       G ++    + + +F       I+  +N  FD  + RN   + F   +     
Sbjct: 457 TEDMLSGAGTIK----QVLPEFTKFAEGGILVAHNASFDYGFIRNSVKKYFGGDWE---- 508

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + +++Y               A S+ L ++     + H + H A  D   
Sbjct: 509 --MPCIDTLALAKSLY--------------RAKSYSLDNVVKRLKLGHFDHHRAYEDAKV 552

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  ++    ++  K      +   K +  + +D      +  +S       +   L+   
Sbjct: 553 TAEVLKKFLQQAKKRGVEKVNELEKLRKNQNLDSLKPVHISILSKNRKGLENLYKLVTAS 612

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
                Y    I  +L  D R    + S  ++  L  ++     +  +  +         +
Sbjct: 613 HTKYFYMKPRIPKSLLTDFREGLLIGSACISGELSKAYIGGASVDELE-EIAKFYDYIEV 671

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP+D       E   +  +  ++      +     +    +    +  +  D   +    
Sbjct: 672 MPLDNIDTSEGE-TSMSKETLIKMYREFYKVGKKLNIPVVMTGDVHFVNPHDDIYRAAIN 730

Query: 364 FFADVDRQIMDR--ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
              D D         L T  E +      F D  +          N     S        
Sbjct: 731 AAQDYDNFQNQPSLYLHTTEEMIGKALEIFEDEGI---AKEIVVDN-----SRLIASQIE 782

Query: 422 EH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                +  L    IE    +++ ++ E      G    + +   L   L+ +I
Sbjct: 783 NVVPIEGKLHPPVIEGADEEVRKMAIENAERLYGKPLPDIVEKRLNRELEAII 835


>gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43]
 gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 1452

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 70/479 (14%), Positives = 139/479 (29%), Gaps = 53/479 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++ +  E I+      C          +   +T 
Sbjct: 437 DTFVVFDLETTGFSPINDKIIEIGAVKI-KSGEIIDKFS---CFVNPKRDIPYKITQLTS 492

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I         V+E      + +F       ++  +N  FD  + +               
Sbjct: 493 IDNNMVKDADVIEN----ILPKFMEFCEGTVVVAHNAAFDTGFIKKNCRDL--------- 539

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N N    +LD +       P+  +           KL  +A   GI   N H A  D  
Sbjct: 540 -NINFDLPILDTVTLCRFLYPELKK----------VKLNIVAKFLGISLENHHRAVDDAK 588

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  ++    EK  + FE        +     +DI+       +      +         
Sbjct: 589 ATADILLKSFEKIEEDFEINDLKSLNDLFLSKVDIRKQPTYHIIILAKTQAGLKNLYKLI 648

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LNKCP 301
              H            +      + L      +        L+G     IKE+       
Sbjct: 649 SKSHIDNFFRRPRTPKTLLSEFREGLIIGSACEAGEVYKAVLEGRSDDEIKEIIEFYDYV 708

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            + PI        +    D +   E N  + R          A  +  + + + +   ++
Sbjct: 709 EIQPIANNNFLIAKGSVKDEEELREINRKIYRLGKECNKPTVATGDVHFLNPNDEAFRKI 768

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARN----FPHTLSE 414
                             +  +    L L  ++  L E  +  +  A+      P  +S+
Sbjct: 769 IMAGQGF-----------SDADNQPPLYLKTTEEMLKEFSYLGKDIAKEVVIDNPKKISD 817

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                 L+         +IE  +  ++++    +    G+   E +   L + L  +I 
Sbjct: 818 SIG--VLKPIPDETYPPKIEGAEEDIKNMTLNKAHAIYGEVLPEVVQKRLDKELNSIIN 874


>gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1]
 gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
          Length = 1438

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 137/475 (28%), Gaps = 43/475 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  +V++D ET G     +   +F    ++     I+ +  FF KP     P      IT
Sbjct: 402 SQTYVVFDLETTGLSPRFNEIIEFGASIIENG--IIKESHQFFIKPTKPIPPS--ITEIT 457

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            IT       G  + E  R+I+         I   +N +FD    +  F +   D+    
Sbjct: 458 KITDNTVAN-GYSQEEGVRKIYDILKNR---ICVAHNAKFDINVCKENFLKYGLDN---- 509

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKA 179
             +     D L + R                D A S++L+ +A           AH A  
Sbjct: 510 --SKIIGIDSLAIAR-------------FLIDEAKSYRLEIVAKKFNVYYARNEAHRADY 554

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           D      +  L+  K  +                 +  +     V V             
Sbjct: 555 DANVLANVWILMILKLAREKNIRTANELAAVNDDKLFAKKFPREVRVIAKNQKGLKKLFK 614

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
           I   +    Y           +      L +   A  +    + + G     +K +    
Sbjct: 615 IISKSLTDDYHGGPRLFIDKWEHDEDLLLGTSTNAGWV--WEEAMTGTDENILKALAPYD 672

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
                PI      + +      +       LL +   L     A+ +  Y    Q +  +
Sbjct: 673 YIEFPPISTFNYIYKDDSITLEQVQFAYKDLLEKAKKLGKLCIAVSDARYIYDYQSLIYR 732

Query: 360 LYDGFFADVDRQIMDRILR--TAPEQLSTLNLPFSDRRLPEL----FFRYRARNFPHTLS 413
           +Y         Q   +  R    P+          D     L           +  H L+
Sbjct: 733 IYVNAPTLGGGQHWLKKYREIATPDFKYLTTRQMKDE-FKFLNDGTLINEIVVDNTHKLA 791

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYL 464
           E+      E  K  L     ++  NKL+ +    + E  G+   E +++ + + L
Sbjct: 792 EQITPKI-EVIKDKLYFPTFDDSANKLKEVVYQTAKERYGNNIDEKILSRIEKEL 845


>gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956]
 gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 1447

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/476 (11%), Positives = 128/476 (26%), Gaps = 47/476 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     DR  Q + V++ +  E ++  + F       +    +   +T IT
Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKM-QDGEVLDHFDQF---IDPGFHLSEQTTALTSIT 482

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E E  +    F    +  ++  +N+ FD  +    + R+           
Sbjct: 483 DDMVQGS-KTEEEVLKLFDDF---ADGSLLAGHNVSFDMGFMNVAYERHGMG------QI 532

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R ++                  ++L  L+    +   + H A  D  AT
Sbjct: 533 KQPVIDTLPLARFLH-------------PDFRGYRLNTLSKRFKVSLEHHHLASYDSEAT 579

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L+ +  +   + +   Y       +      ++  P          +           
Sbjct: 580 GHLLAIFLKDAEERYGVTYVDDLNKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSL 639

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            +  Y   V     S   R  + L               ++       +         + 
Sbjct: 640 SNVEYFARVPRIPRSVLNRYREGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYDYIEVQ 699

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P       +             +L  + +                  +            
Sbjct: 700 PK----PNYAPLLESGVITDQAHLEDILKNMVKLGSALNKPVVATGDAHYINPEDAIYRK 755

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLSEKEK 417
                +   + + RT   +   ++   +D  L            +    N    L     
Sbjct: 756 ILINSQGGANPLNRT---ERPDVHFRTTDEMLDLFSFLGEDVAKQIVVDN--THLVTDMV 810

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVIP 469
            D +   K  L    +E  + ++Q    + + E+ GD   + + + +   L  ++ 
Sbjct: 811 DDGIRPVKAGLYPPHMEGAEQEIQDRTWTTAKEWYGDPLPQLVKDRVELELNSIVS 866


>gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
 gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
          Length = 572

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   +     +   V+V    E +   + F                +TGI
Sbjct: 19  TFVVVDLETTGGSPSECGITEIGAVKVRA-GEVLGEFQTF---VNPGQPIPAFISVLTGI 74

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         VE      +  F       ++  +N  FD  + +    R   D       
Sbjct: 75  TDAMVRDAPRVE----PALVAFLEFAAGSVLVAHNAGFDVSFLKAACGRAERDW------ 124

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + ++D +                 D A + +L  LA+  G      H A  D  A
Sbjct: 125 ---PSFPVVDTVHLARQL--------VTRDEAPNHRLGSLAVLFGATTTPDHRALHDARA 173

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  +  +   L  +  +
Sbjct: 174 TVDVLHGLIARVGSLGVHSLE 194


>gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 1452

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 70/479 (14%), Positives = 139/479 (29%), Gaps = 53/479 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V++ +  E I+      C          +   +T 
Sbjct: 437 DTFVVFDLETTGFSPINDKIIEIGAVKI-KSGEIIDKFS---CFVNPKRDIPYKITQLTS 492

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I         V+E      + +F       ++  +N  FD  + +               
Sbjct: 493 IDNNMVKDADVIEN----ILPKFMEFCEGTVVVAHNAAFDTGFIKKNCRDL--------- 539

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N N    +LD +       P+  +           KL  +A   GI   N H A  D  
Sbjct: 540 -NINFDLPILDTVTLCRFLYPELKK----------VKLNIVAKFLGISLENHHRAVDDAK 588

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  ++    EK  + FE        +     +DI+       +      +         
Sbjct: 589 ATADILLKSFEKIEEDFEINDLKSLNDLFLSKVDIRKQPTYHIIILAKTQAGLKNLYKLI 648

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LNKCP 301
              H            +      + L      +        L+G     IKE+       
Sbjct: 649 SKSHIDNFFRRPRTPKTLLSEFREGLIIGSACEAGEVYKAVLEGRSDDEIKEIIEFYDYV 708

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            + PI        +    D +   E N  + R          A  +  + + + +   ++
Sbjct: 709 EIQPIANNNFLIAKGSVKDEEELREINRKIYRLGKECNKPTVATGDVHFLNPNDEAFRKI 768

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARN----FPHTLSE 414
                             +  +    L L  ++  L E  +  +  A+      P  +S+
Sbjct: 769 IMAGQGF-----------SDADNQPPLYLKTTEEMLKEFSYLGKDIAKEVVIDNPKKISD 817

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                 L+         +IE  +  ++++    +    G+   E +   L + L  +I 
Sbjct: 818 SIG--VLKPIPDETYPPKIEGAEEDIKNMTLNKAHAIYGEVLPEVVQKRLDKELNSIIN 874


>gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
           29176]
 gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
           29176]
          Length = 1517

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 110/405 (27%), Gaps = 46/405 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + ++++D ET G     D+  +   V+V    E ++    F            E   +T 
Sbjct: 479 DTYIVFDIETTGFSAIRDKIIEIGAVKV-VNGEIVDRFSTF---VNPQRPIPFEITNLTS 534

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  L    +E      + QF       ++  +N  FD  +                +
Sbjct: 535 ITDEMVLEADPIEN----VLPQFLEFVGDGVLVAHNASFDVGFIEQNCR----------Y 580

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R+  +D +       P   +          +KL  +A   GI   N H A  D  
Sbjct: 581 QEIEYRFTYVDTVAMARVLLPTLSK----------YKLNLVAKTLGISLENHHRAVDDAG 630

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     E   K         N+   R +  I+ M    H+  +         L   
Sbjct: 631 ATAEIFVKFVEMLKKDHITDLKGINRFGERNVNAIRKMAT-HHIIILAKNDIGRYNLYQL 689

Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE----VHL 297
           ++  H  Y         S      + L      +        L+      I E       
Sbjct: 690 ISESHMTYYGRRPRIPKSLLNEHREGLVIGSACEAGELYKAILEERPAETIAELADFYDY 749

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
            +   +    +       +     +   E N  ++      +    A  +  +     +V
Sbjct: 750 YEIQPIGNNRFMIGSSKVKNVNSEEDLQEINRKIVELGEQFKKPVVATCDVHFLDPEDEV 809

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             ++                     +    L L  +D  L E  +
Sbjct: 810 YRRIIMAGKGFD-----------DADTQPPLFLRTTDEMLEEFAY 843


>gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus stomatis DSM 17678]
          Length = 1202

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 71/480 (14%), Positives = 132/480 (27%), Gaps = 59/480 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV++D ET G  V  D   +   V +    +  +    F            E   +T 
Sbjct: 185 QRFVVFDIETTGFSVTGDNITEIGAVLL-EDGQIKDRFSTF---VNPKMDIPYEVQELTN 240

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         +E      +++F       I+  +N  FD  +          D      
Sbjct: 241 ITNDMVEDAPGIE----EALNKFMDFAKDSILVAHNAYFDTGFIAQKCSEVGLD------ 290

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              + + D L + R                     F L  L  A  I     H A  D  
Sbjct: 291 -YKHEKLDTLLLARV-------------LMPHMKRFGLDRLTKALSINLSGHHRAVNDAE 336

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP--LVHVSGMFGASRSNTALI 240
           AT  L         K         + N +   ID   + P      +  +   R+   LI
Sbjct: 337 ATAQLFLRFIAMMKKDGVE--KLSDINSVYGKIDHTKLRPSHATIYAQNYQGLRNLYELI 394

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    +  Y+  ++  +L  + R    + S   +  LF +    K    +  K +     
Sbjct: 395 SDSHLNHFYRQPLMLKSLIKEKRDGLIIGSACSSGELFNAIQRNKTGEEID-KILDFYDF 453

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             +MP+D  K           +     N  L+           A  +     + + +   
Sbjct: 454 IEIMPLDNLKYLVESGEIKTFEELKNINKKLVDLGNQSGKLVVATGDVHTLDAHERLYRS 513

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTL 412
           +         ++ ++ +               +D  L E         +R    N     
Sbjct: 514 VLKYSQIPKYKKNIESLH-----------FRTTDEMLEEFAYLGPETAYRVVVENSNKI- 561

Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                +   +          I+  K +L+ +    +    G+   E +   L   L  +I
Sbjct: 562 -ADMFESI-KPIPDKTYPPIIDGSKEELRRMCFDKAERIYGNPLPEIVEKRLNRELNSII 619


>gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1442

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 66/477 (13%), Positives = 131/477 (27%), Gaps = 54/477 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   +   V++    + ++    F C         PE   +TGI
Sbjct: 429 TYVVFDLETTGFSPVTDEIIEIGAVKIHGN-KILDRFSAFVC---PGREIPPEVQELTGI 484

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           AE   +   F       ++  +N +FD  + R    +    +      
Sbjct: 485 TNNMVSDAP-PIAEVLPKFIDFV---GDAVLVAHNAQFDTGFLRANMEKILNRTLA---- 536

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R                    + KL+ LA    ++  N H A  D  A
Sbjct: 537 --QPVLDTLGLAR-------------GLFPDMKNHKLKTLAKEFNVKLENHHRAVDDAEA 581

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+    E+  +         N   +  +   Q  +  V +         N   +   
Sbjct: 582 TAQLLIKFLERLAEHNIDTLGQINSL-IGNINIDQLRSHHVVILVKNQQGLKNLYQLVT- 639

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LNKCPI 302
             H +Y         S  ++  + L      +        L       ++E+        
Sbjct: 640 DSHLKYYHRHPRIPKSELIKKREGLIIGSACEAGELFRALLDNAPQERLEEIAGFYDYLE 699

Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P+   +    E     +    E N  +      +     A  +  +      V   + 
Sbjct: 700 IQPVGNNEFLLREGRVNSYDELRELNRKIFELGRKIGRPVVATGDVHFLDPEDAVYRAVL 759

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                               +  + L L  ++  L E    Y        +  +      
Sbjct: 760 LAGKGFE-----------DADNQAPLYLKTTEEMLEEFS--YLGLENAREVVIENPVRIA 806

Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           E               +IE  + ++  L    + +  GD   + +   + + L  +I
Sbjct: 807 ESIDSIKPMPDDFFPPKIEGAEEQIIELTISTAKKIYGDPLPDIVQQRVDKELNSII 863


>gi|153954051|ref|YP_001394816.1| DNA polymerase III PolC [Clostridium kluyveri DSM 555]
 gi|219854664|ref|YP_002471786.1| hypothetical protein CKR_1321 [Clostridium kluyveri NBRC 12016]
 gi|146346932|gb|EDK33468.1| PolC [Clostridium kluyveri DSM 555]
 gi|219568388|dbj|BAH06372.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1439

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 62/477 (12%), Positives = 134/477 (28%), Gaps = 50/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FVI+D ET G  +  D   +   +++ ++ + +     F      +         +TG
Sbjct: 424 DTFVIFDIETTGFSMTNDNIIEIGAIKI-KEGKVVGKFSEF---VNPERPIPLTITQLTG 479

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       ++     +  +F    +  ++  +N  FD  + +               
Sbjct: 480 ITDEMVQNCESIKY-ILPKFMEFI---DNSVVVAHNANFDVGFIKKNCMELNL------- 528

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D + + +                     FKL  +A    I   N H A  D  
Sbjct: 529 KFKNPVMDTIPLCK-------------FLFPELKRFKLNVVAKHLDISLENHHRAVDDAG 575

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  ++    +   +         NK  L  +   +     + +         N   +  
Sbjct: 576 ATCEILLRCFKMLKEKNILSLGDLNKEFLSNIDVKKQPMYHLIILVKNQIGLKNLYKMVS 635

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIK-EVHLNKCP 301
              +  Y         S  ++  + L      +      + L G     +K  +      
Sbjct: 636 K-SNLNYFFKKPRMPKSIIIKHREGLIIGGACEAGQVYREVLGGKSDSELKDILDFYDYL 694

Query: 302 ILMPIDYCKKEHFERWGIDHKRCL---ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
            + P++            D ++       +  L    N+        +            
Sbjct: 695 EIQPVENNLFMVRNGLVKDIEQLKDINRRICDLGVINNIPVIATGDVHFMDPKDEIFRRI 754

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
            +    ++D D Q       T       +   F       L  + +AR      + K   
Sbjct: 755 IMAGQGYSDADNQPPLYFRTTE-----EMLFEFE-----YLGEK-KAREVVIENTNKIAD 803

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
              E           +IE  + ++++++ +      GD   E +   L + L  +I 
Sbjct: 804 MIEEVKPIPDETFPPKIEGAEEEIKNMTLKKVHSIYGDNLPEIVQERLDKELNSIIN 860


>gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1436

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/475 (14%), Positives = 134/475 (28%), Gaps = 47/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++ ++ E I+  E F       +      + +TGI
Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKM-KEGEIIDRFERFA---NPHHPLSATTIELTGI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         + +E  R  H++       I+  +N  FD  +      +   +       
Sbjct: 476 TDDMVQNAPEI-SEVLRDFHEWM---GDSILVAHNASFDMGFLNMGLQKIGLEKAANG-- 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 + +L  LA    IE V  H A  D   
Sbjct: 530 ----VIDTLELGRFLY-------------PHMKNHRLNTLAKKFDIELVQHHRAIYDAET 572

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+  + +      E     R  + + +    Q   P                     
Sbjct: 573 TGYLLNKMLK-DAFEREITMHDRLNDYMGEGNAYQRARPYHATLLAQNDVGLKNLFKLVS 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S   +  + +       R       ++  +              +
Sbjct: 632 ISHLNYFYRVPRIPRSQLDKYREGILIGTACDRGEVFEGMMQKGIDEVEGAAEFYDYIEV 691

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P D  K         D K       ++     L ++              + + ++Y  
Sbjct: 692 QPPDNYKHLIELDLVRDEKALK---DIISNIVKLGEKIGKPVVATGNVHYLNPEDKIYRK 748

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSEKEK 417
                            P+    ++   +D  L    F      +    +    +   + 
Sbjct: 749 ILIGSQGGANPLNRHQLPD----VHFRSTDEMLNCFSFLDGDKAKEIVVHNTQKI--ADM 802

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468
            D ++  K  L   +IE    +++ +S         E L       L + L+ +I
Sbjct: 803 IDDIKPIKDDLYTPKIEGADEEMREMSYAMARSIYGEELPEVVEARLEKELKSII 857


>gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales
           bacterium]
          Length = 1428

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/474 (14%), Positives = 144/474 (30%), Gaps = 50/474 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+++D ET G +   D   +   +++ +  E + +   F      +         +TGIT
Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIKM-KGSEVLGTYSTF---VKPEKELSAMITSLTGIT 473

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E      +F      CI+  +N  FD  + RN   ++F          
Sbjct: 474 EDMLSEA-RPIKEVLPEFTKFTE---GCILVAHNASFDYGFVRNSVKKHF---------G 520

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G+     +D +    +                S+ L ++     + H + H A  D   T
Sbjct: 521 GDWEMPCIDTLALAKSLFRS-----------KSYSLDNVVKRLKLGHFDHHRAFEDAKVT 569

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             ++    +   K      +   K +  + +D      +  ++       +   L+    
Sbjct: 570 AEVLKKFVQLAKKRGVQNVNELEKLRKNQNLDSLKPFHISILAKNKKGLENLYRLVTASH 629

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
               Y    I  +L  DMR    + S  ++  L  ++        +  +         +M
Sbjct: 630 TKYFYMKPRIPKSLLADMREGLLIGSACVSGELSKAYIGGASTDELE-EIAKFYDYIEVM 688

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P+D       E   +  +   +      +     +    +    +  +  D   +     
Sbjct: 689 PLDNIDTSEGE-TNMSRETLAKMYREFYKVGKRLNIPVVMTGDVHFLNPHDDIFRAAINA 747

Query: 365 FADVDRQIMDR--ILRTAPEQLSTLNLPFSDRRL-PELFF---RYRARNFPHTLSEKEKQ 418
             D D         L T  E L   +  F D  +  E+     RY A     +L E+   
Sbjct: 748 AQDYDNFQNQPSLYLHTTEEMLDKASEIFEDEIIVREVVIDNSRYIA-----SLIEEVTP 802

Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                 +  L    IE    +++ ++ E      G    E +   L   L+ +I
Sbjct: 803 -----VEGKLHPPVIEGADEEVRKMAIENAESLYGSPLPEIVERRLNRELEAII 851


>gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
 gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
          Length = 1561

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 106/393 (26%), Gaps = 37/393 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     +R  +   V+V    +  +    F      D     +   +T 
Sbjct: 536 DTYVVFDIETTGFSPEKNRIIEIGAVKV-TDGKITDKFSTF---VNPDVPIPFDIEKLTS 591

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     L     + +    + QF        +  +N  FD  +  +   +          
Sbjct: 592 INDAMVL--PYPKIDVI--LPQFLEFVGDAALVAHNASFDVGFIGHYAEKQGLAFNPT-- 645

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   +LD +       P+  +          FKL  +A A  I   N H A  D  
Sbjct: 646 --------VLDTVTMARLLLPNLNR----------FKLDTVAKALNISLANHHRAVDDAG 687

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
            T  +     +          D  N         I+ + P  HV  +         L   
Sbjct: 688 CTAEIFAAFVKMLRDRDVETLDQLNSLNAMNEDTIRKL-PTYHVIILAKNDIGRINLYRL 746

Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300
           V+W H  Y         S   +  + L      +        L+G     + + VH    
Sbjct: 747 VSWSHLTYYARRPRIPKSVLSQYREGLLIGSACEAGELYQAMLRGAPASEVARLVHFYDY 806

Query: 301 PILMPIDYCKKEHFERWG-----IDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
             + P+        +         D K     +  L +            +         
Sbjct: 807 LEIQPLGNNSFMLRDEKSTVKTEEDLKEINRRIVNLGEHFGKPVCATCDVHFLDPQDEVY 866

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLN 388
               +    F D D Q    +  T  E L+  +
Sbjct: 867 RRIIMAGQGFKDSDDQAPLYLRTTE-EMLAEFD 898


>gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1437

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/472 (13%), Positives = 139/472 (29%), Gaps = 41/472 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  + A V++ +  + I+  E         +      + +T IT
Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEE---MIDPGFPLSELTINLTHIT 469

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E E  R   QF    +  I+  +N+ FD  +  N + R+           
Sbjct: 470 DDMVHGS-KSEEEVFRLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 519

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                 + KL  LA    +   + H A AD  AT
Sbjct: 520 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 566

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + ++  K++      +  +++      +   P   +      +           
Sbjct: 567 GYLLYALEKEAAKMYNMTKLNQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSL 626

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            + +Y   V     S   ++ + L               ++        +        + 
Sbjct: 627 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQ 686

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P    +               + L  + +  +  ++   +    +     D    +Y   
Sbjct: 687 PPAVYQPLLEADLIKGESHLKDILQKIVKIGDDLEKPVVVTGDVHYLDQHDA---IYRKI 743

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL----FFRYRARNFPHTLSEKEKQDW 420
                         + P+          D     L      +    N    L      D 
Sbjct: 744 LIHSQGGANPLNRHSLPDVHFRSTREMLDD-FSWLGAEKAQKLVVTN--SNLIADLIDDD 800

Query: 421 LEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
           +   K  L    +   + KL+    + + E  G+   E +   L + L+ +I
Sbjct: 801 ITPVKDKLYTPEVPGVEEKLKHDVMATAYELYGNPLPEIVAQRLDKELKSII 852


>gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1436

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/475 (14%), Positives = 134/475 (28%), Gaps = 47/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++ ++ E I+  E F       +      + +TGI
Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKM-KEGEIIDRFERFA---NPHHPLSATTIELTGI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         + +E  R  H++       I+  +N  FD  +      +   +       
Sbjct: 476 TDDMVQNAPEI-SEVLRDFHEWM---GDSILVAHNASFDMGFLNMGLQKIGLEKAANG-- 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                 + +L  LA    IE V  H A  D   
Sbjct: 530 ----VIDTLELGRFLY-------------PHMKNHRLNTLAKKFDIELVQHHRAIYDAET 572

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+  + +      E     R  + + +    Q   P                     
Sbjct: 573 TGYLLNKMLK-DAFEREITMHDRLNDYMGEGNAYQRARPYHATLLAQNDVGLKNLFKLVS 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S   +  + +       R       ++  +              +
Sbjct: 632 ISHLNYFYRVPRIPRSQLDKYREGILIGTACDRGEVFEGMMQKGIDEVEGAAEFYDYIEV 691

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P D  K         D K       ++     L ++              + + ++Y  
Sbjct: 692 QPPDNYKHLIELDLVRDEKALK---DIISNIVKLGEKIGKPVVATGNVHYLNPEDKIYRK 748

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSEKEK 417
                            P+    ++   +D  L    F      +    +    +   + 
Sbjct: 749 ILIGSQGGANPLNRHQLPD----VHFRSTDEMLNCFSFLDGDKAKEIVVHNTQKI--ADM 802

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468
            D ++  K  L   +IE    +++ +S         E L       L + L+ +I
Sbjct: 803 IDDIKPIKDDLYTPKIEGADEEMREMSYAMARSIYGEDLPEVVEARLEKELKSII 857


>gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1554

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/402 (14%), Positives = 108/402 (26%), Gaps = 45/402 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     ++  +   V+V    +  +    F      D     +   +TG
Sbjct: 529 DTFVVFDIETTGFSPKKNKIIEIGAVKV-VDGKITDRFSSF---VNPDVPIPFDIEKLTG 584

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     L     + +    + QF       ++  +N  FD  +  +              
Sbjct: 585 INDSMVL--PYPKIDVI--LPQFLDFVGDAVLVAHNASFDVGFISHFAEEQGLHFNPT-- 638

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   +LD +       P+  +          FKL  +A A  I   N H A  D  
Sbjct: 639 --------VLDTVTIARLLLPNLNR----------FKLDTVAKALNISLANHHRAVDDAG 680

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +                +  N         I+ + P  HV  +         L   
Sbjct: 681 ATAEIFAAFVRMLRDRGVTDLEALNGMSTMDTNTIRKL-PTYHVIILAKNDIGRVNLYRL 739

Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KEVHL 297
           V+W H  Y         S   +  + L      +        L+G     I         
Sbjct: 740 VSWSHLEYYARRPRIPKSILDKYREGLIIGSACEAGELYQALLRGAPDAEIARLVNFYDY 799

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
            +   L    +  ++       +      N  ++           A  +  +     +V 
Sbjct: 800 LEIQPLGNNSFMLRDEKSTVKSEADLIEINKKIVELGMQFNKLVCATCDVHFLDPQDEVY 859

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
            ++        D            +  + L L  ++  + E 
Sbjct: 860 RRIIMAGQGFKDS-----------DDQAPLYLRTTEEMIKEF 890


>gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705]
 gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 1444

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/472 (13%), Positives = 138/472 (29%), Gaps = 41/472 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  + A V++ +  + I+  E         +      + +T IT
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEE---MIDPGFPLSELTINLTHIT 476

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E E  R   QF    +  I+  +N+ FD  +  N + R+           
Sbjct: 477 DDMVHGS-KSEEEVFRLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 526

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                 + KL  LA    +   + H A  D  AT
Sbjct: 527 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANVDAEAT 573

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + ++  K++      +  +++      +   P   +      +           
Sbjct: 574 GYLLYALEKEAAKMYNMTKLNQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSL 633

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            + +Y   V     S   ++ + L               ++        +        + 
Sbjct: 634 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQ 693

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P    +               + L  + +  +  ++   +    +     D    +Y   
Sbjct: 694 PPAVYQPLLEADLIKGESHLKDILQKIVKIGDDLEKPVVVTGDVHYLDQHDA---IYRKI 750

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL----FFRYRARNFPHTLSEKEKQDW 420
                         + P+          D     L      +    N    L      D 
Sbjct: 751 LIHSQGGANPLNRHSLPDVHFRSTREMLDD-FSWLGAEKAQKLVVTN--SNLIADLIDDD 807

Query: 421 LEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
           +   K  L    +   + KL+    + + E  G+   E +   L + L+ +I
Sbjct: 808 ITPVKDKLYTPEVPGVEEKLKHDVMATAYELYGNPLPEIVAQRLDKELKSII 859


>gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
 gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
          Length = 1464

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/452 (12%), Positives = 114/452 (25%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 425 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIEEFDEF---IDPGHPLSAFTTQLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +    F       ++  +N  FD  +    + R+          
Sbjct: 481 TNEHVRGA-KPLVQVLKEFQAF---CEGTVLVAHNATFDVGFMNANYERHGLP------K 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 ITQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVGLEHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 578 TGRLLFIFIKDVAEKHGVTNLKDLNIDLIDENSYKKARVKHATLYVKNQTGLKNMFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
               +Y + V     +      + L               +   V   ++         +
Sbjct: 638 LSGTKYFEGVPRIPKTVLDAHREGLILGSACSEGEVFDAVMSQGVDAAVEVAKYYDFIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357
           MP         +    D +     +  L +      +  L                + + 
Sbjct: 698 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIV 757

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411
             L  G   +      +         L   +   ++  L E  F      R       + 
Sbjct: 758 RSLGQGAMINRTIGHGEDAQPAP---LPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNA 814

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           L   E  + +E  K  L    I++ +  +  L
Sbjct: 815 L--AETFEPVEVVKGDLYTPFIDKAEETVAEL 844


>gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
 gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
          Length = 1463

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
           27560]
 gi|149734600|gb|EDM50517.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
           27560]
          Length = 1474

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/407 (13%), Positives = 119/407 (29%), Gaps = 42/407 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + +V++D ET G     D+  +   V+V    + I+    F      +         +
Sbjct: 405 LNDRYVVFDLETTGFSAKSDKIIEIGAVKV-ENGKIIDRFSTF---VNPEIPIPFRIEKL 460

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T I  +  +    +E E   +  +F       ++  +N  FD  +      R   +    
Sbjct: 461 TSINDEMVIDAPKIE-EILPQFMEF---CKDSVMVAHNSDFDMSFIEANCKRQDLEC--- 513

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   + ++D +           +          +KL ++A A GI   + H A  D
Sbjct: 514 -------DFTVIDTVAMSRYLIIGLGR----------YKLDNVAKALGIVLDHHHRAVDD 556

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH--VSGMFGASRSNTA 238
              T  +   + +          D  N+   +    I  + P  H  +       R N  
Sbjct: 557 AECTALIFLKLCKMLEGKGIDNLDELNRQGKQSKNLIDKL-PAHHAIILVKNQVGRVNLY 615

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KE 294
            +   +    + +       S  + + + L      +        L G     I    + 
Sbjct: 616 KLISKSHIETFANKRPRILKSDYLELSEGLIIGSACEAGELYQAILHGKSQQEIARLAEF 675

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
               +   +   ++  K          K  ++++  L++        K I      +   
Sbjct: 676 YDYFEVQPIGNNEFMLKTGDPEIDDRKKFLVDSVEELQE-----VNKKIIDLGKKFNKMT 730

Query: 355 DVDSQLYDGFFADVDRQIMDRILR--TAPEQLSTLNLPFSDRRLPEL 399
                ++     D   + + +        +  + L L  +D  L E 
Sbjct: 731 VATCDVHFLDPEDEIYRRIIQCGNGFKDADNQAPLYLRTTDEMLKEF 777


>gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1487

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/404 (14%), Positives = 116/404 (28%), Gaps = 48/404 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V+V    + +     F      +     E   +T 
Sbjct: 450 DAFVVFDIETTGFSSVKDKIIEIGAVKV-ENGKIVSRYSTF---VNPEVPIPFEITKLTS 505

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    +    +E      + +F       ++  +N  FD  +      R   +    S 
Sbjct: 506 ITDAMVIDAPKIE----TVLPEFMEYVGDAVLVAHNAGFDVGFIEENCRRLGMERKLTS- 560

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D + + R                   + +KL  +A   GI   N H A  D  
Sbjct: 561 ------VDTVALARV-------------LLPTLSRYKLNIVAKTLGISLENHHRAVDDAG 601

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     E   +         N+        I+ M P  HV  +         L   
Sbjct: 602 ATAEIFVKFVEMLKEREITTLKGVNEFGAMNPDAIRKM-PAHHVIILAKNDVGRVNLYTL 660

Query: 243 V-AWHPRYKDSVIGCNLSGDMRVFQDL------DSVQLAKRLFTSHDELKGLVPVPIKEV 295
           V   H +Y   +     S   R  + L      ++ +L + +     E +    V   + 
Sbjct: 661 VSMSHLKYFGRMPRIPKSELNRYREGLIVGSACEAGELYQAILNDKSEEQIAKIVNFYD- 719

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           +L   P+       + E              N  +++     +       +  +     +
Sbjct: 720 YLEIQPLGNNAFMLESERISNVNTKEDLIQINKKIVKLGEEFQKMVVGTCDVHFLDPDDE 779

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           V  ++                  +  +  + L L  ++  + E 
Sbjct: 780 VYRRIIMTGKGF-----------SDADDQAPLYLRTTEEMMSEF 812


>gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
 gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
          Length = 1464

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/452 (12%), Positives = 114/452 (25%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 425 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIEEFDEF---IDPGHPLSAFTTQLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +    F       ++  +N  FD  +    + R+          
Sbjct: 481 TNEHVRGA-KPLVQVLKEFQAF---CEGTVLVAHNATFDVGFMNANYERHGLP------K 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 ITQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVGLEHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 578 TGRLLFIFIKDVAEKHGVTNLKDLNIDLIDENSYKKARVKHATLYVKNQTGLKNMFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
               +Y + V     +      + L               +   V   ++         +
Sbjct: 638 LSGTKYFEGVPRIPKTVLDAHREGLILGSACSEGEVFDAVMSQGVDAAVEVAKYYDFIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357
           MP         +    D +     +  L +      +  L                + + 
Sbjct: 698 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIV 757

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411
             L  G   +      +         L   +   ++  L E  F      R       + 
Sbjct: 758 RSLGQGAMINRTIGHGEDAQPAP---LPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNA 814

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           L   E  + +E  K  L    I++ +  +  L
Sbjct: 815 L--AETFEPVEVVKGDLYTPFIDKAEETVAEL 844


>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1446

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/475 (16%), Positives = 147/475 (30%), Gaps = 46/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     DR  + A V+V +   +I+S E +      +         +T I
Sbjct: 425 TYVVFDVETTGLSAERDRLIEIAAVKV-KNGAEIDSFESY---INPERPISELITRLTSI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        V E E     + +    +  I+  +N +FD  +    F R   ++      
Sbjct: 481 TDDDVRDAPV-EKEVMTDFYNWLDEDD--ILVAHNAKFDLGFIDKSFERLGLEN------ 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L + RA              +  A    L +LA    +  V  H A  D  A
Sbjct: 532 KNNASIDTLFISRA-------------ENKEAKRHGLSNLAKMYKVRLVQHHRAIYDTKA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242
           T  +   +  +   L    ++  +     K    ++ T    +        +    L++ 
Sbjct: 579 TAEIFIKMLNQLYALGIERHNEIDNKIDLKFAHTRSRTFPCSILVKNAKGLKDLFRLVSY 638

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                           S   +  QDL             + L          +       
Sbjct: 639 SCTEYL-SSGKPTIPRSLLEQYRQDLLIGSGNSENEVFEELLNSKEDKVESIIDFYDYIE 697

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK-----AIYNKPYTSSSQDVD 357
           + P+++ +         D       L  L   +  + +         Y   Y    + + 
Sbjct: 698 IQPMNHYESFITNERIADKTELEIILKKLISLSKKKGKIVVATGDCYYLDEYQHVYRQIL 757

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
                      D + M   L T  E++      F D+ L E           H +S+K  
Sbjct: 758 RLSVKNNPGARDIKPMATFLTT--EEMLE-EFSFLDKELRE----EIVIENTHKISDKI- 809

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
            + +   K  L    I+   +++++L    + +  G+E  E +   L + L  +I
Sbjct: 810 -ELVVPLKDKLYTPNIKGAADEVRNLSYSMAHKIYGEELPEIVEKRLEKELTSII 863


>gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 1448

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/479 (11%), Positives = 135/479 (28%), Gaps = 47/479 (9%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + +VI+D ET G     D+  + +  ++ +  + ++  + F       +    +   +
Sbjct: 424 LNSTYVIFDVETTGLSAIYDKVIELSATKM-KDGKVLDRFDEF---IDPGFPLSEQTTEL 479

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT          E E  +    F       II  +N+ FD  +    + R+       
Sbjct: 480 TSITDDMVQGS-KSEEEVFKMFQDF---CAGSIIAGHNVSFDMGFMNTGYQRHHLPEI-- 533

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + R +Y                  ++L  L+    +   + H A  D
Sbjct: 534 ----TQPVIDTLPLARFLY-------------PDLRGYRLNTLSKKFKVSLEHHHRANYD 576

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  L+ +  +   K ++ +Y       +      ++  P          +       
Sbjct: 577 AEATGHLLHIFLKDAEKRYQVVYVDDLNKHMTDNGAYRHARPFHVTLLAKNQAGLKNMYK 636

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
                + +Y   V     S   R  + L               ++       ++      
Sbjct: 637 LVSLANVKYFYRVPRIPRSVLERYREGLLIGSACSSGEVFTAMMQKGYAEAKQKAAFYDY 696

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             + P         ++          +L  + +                  +        
Sbjct: 697 LEVQPKPNYAPLLEQKVISS----EHHLESIIKNMIKLGDELGKTVVATGDAHYLNPEDA 752

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR-------YRARNFPHTLS 413
                    +   + + +T   +   ++   +D  L E  F            N      
Sbjct: 753 IYRKILINSQGGANPLNKT---KRPDVHFRTTDEMLQEFDFLGSDLAHQIVVENTHKIAD 809

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
           E +++  +   +  L    ++  + ++Q      + ++ GD   + + + +   L  ++
Sbjct: 810 EVDQE--ISPVEDKLYTPHMKGAEQEIQDRTWATAKKWYGDPLPKLVYDRVKLELDSIV 866


>gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
 gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
          Length = 1438

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/476 (11%), Positives = 127/476 (26%), Gaps = 50/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G  V  ++  + A V++    ++++    F                +T I
Sbjct: 420 TYVVFDIETTGLSVTQNKIIEIAAVKM-HDGKEVDRYATF---VNPHERIPYNIQQLTNI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          +    + +F +     ++  +N RFD  + +                
Sbjct: 476 NDEMVKDAP----DVEPVMKEFVAFAGDAVLVAHNARFDVGFIQATLRNMGLPEM----- 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L++ R                    + +L  L     +   + H A  D  A
Sbjct: 527 -TNPVLDTLELARL-------------LFPTMKNHRLNTLTTKYKVALESHHRAIDDTVA 572

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              ++  +     ++       R  + + K +           +      ++   L++  
Sbjct: 573 LTEVLNGLLNDAEQIKGLKMLDRLNDYVGKDLSTVRPFHCCIYALNPIGKKNLYKLVSM- 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S    +   L  +   ++       L        +         +
Sbjct: 632 -SHTEYFKRVPCIPKSKLSEMRDGLLIISGCEKGEFFEAVLNKSEEEAEEIAQFYDVLEI 690

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P+        ++           +  + +    L     A  N  Y  +   +   +  
Sbjct: 691 QPLTMYMHLVEKQLVSGPDALKTAIRKVCEIGRRLDKPVIATGNVHYLETRDKLYRDITI 750

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQ 418
                               +    +L  +D  L E  F        + +    + +   
Sbjct: 751 HGITG--------FSPLKDIRKPDAHLRTTDEMLAEFEF--LGEEKAYEVVVKNTSELAD 800

Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468
            +   E     L    ++    ++++   E       E L       L + L+ +I
Sbjct: 801 RFEELELFPDKLFTPLLDGADEEIRNTCYETAKSIYGEELPEVVVARLEKELEPII 856


>gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
           SR1/5]
          Length = 1129

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/482 (13%), Positives = 135/482 (28%), Gaps = 60/482 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G      R  +   V+V  + +  +    F      +         +T I 
Sbjct: 102 FVVFDIETTGFSALTCRIIEIGAVKV-EKGQITDRFSTF---VNPEVPIPFRIEQLTSIN 157

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               L   V+E      + +F      C++  +N  FD  +      R           +
Sbjct: 158 DSMVLDAPVIE----EVLPKFLEFCEGCVMVAHNADFDMSFIIENCKRQGI-------SD 206

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D + + R                     FKL  +A A G+   + H A  D   T
Sbjct: 207 DFTYVDTVGMAR-------------FLLPALNRFKLDTVAKAVGVSLDHHHRAVDDAACT 253

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +     +   +   +  D  N+        I+ + P  H             L   V+
Sbjct: 254 AEIFVRFVKMLEERDIFDVDEMNRQGAVSPDTIRKL-PTYHAIVFARNETGRINLYKLVS 312

Query: 245 W-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPI 302
             H +Y         S   +  + L      +        L+      I + V+      
Sbjct: 313 QSHLKYYHRRPRVPKSVLEKYREGLLVGSACEAGELYQALLRNAPDQEIARLVNFYDYLE 372

Query: 303 LMP----IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           + P          E  +    +      N  +++     +    A  +  +     +V  
Sbjct: 373 IQPLGNNAFMLADEKHDMINSEEDLKEINRKIVKLGEQFKKPVVATCDVHFMDPQDEVYR 432

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           ++                  +  +  + L L  ++  L E    Y        +      
Sbjct: 433 RIIMAGNGF-----------SDADNQAPLYLRTTEEMLEEFS--YLGSEKAEEVVITNTN 479

Query: 419 DWLEHRKKMLT-------RSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
              +   + ++          IE  +  L+++    + E  GD   + + + L   L  +
Sbjct: 480 KIADMI-EKISPIHPDKFPPVIENSEQDLKNICFTKAHEMYGDPLPKIVEDRLDRELNSI 538

Query: 468 IP 469
           I 
Sbjct: 539 IS 540


>gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
 gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
          Length = 1463

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 115/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLVSPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGERLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMVNRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
              +   E  K  L    I++ +  +  L
Sbjct: 816 DIFEPV-EVVKGDLYTPFIDKAEETVAEL 843


>gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM
           43833]
 gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM
           43833]
          Length = 574

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G   A D   +   V+V    +                   P    +TGI
Sbjct: 19  TFVVFDLETTGGSPAEDAITEIGAVKV-CGGQVRGEFATL---IDPGRPIPPFISVLTGI 74

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +       +      +F        +  +N  FD  + R       Y        
Sbjct: 75  TDAMVVAAPK-LPQVLPAFLEFIR---GATLVAHNAPFDLGFLRAACAEYGYPPPAN--- 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D  D+ R +              D     KL  LA          H A AD  A
Sbjct: 128 ---PVVDTADLARRM-----------LTRDETPDCKLATLARYFRSATEPCHRALADARA 173

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   L  +  +
Sbjct: 174 TVDVLHGLLERAGALGVHTLE 194


>gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4]
 gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae
           TIGR4]
 gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae TIGR4]
          Length = 1463

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           +  +   E  K  L    I++ +  +  L
Sbjct: 816 EIFESV-EVVKGDLYTPFIDKAEETVAEL 843


>gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54]
 gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae G54]
          Length = 1463

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           +  +   E  K  L    I++ +  +  L
Sbjct: 816 EIFESV-EVVKGDLYTPFIDKAEETVAEL 843


>gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1463

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           +  +   E  K  L    I++ +  +  L
Sbjct: 816 EIFESV-EVVKGDLYTPFIDKAEETVAEL 843


>gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 595

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 22/195 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   +  R  +   VRV R  E +                      +TGI
Sbjct: 25  SFVVLDLETTGTSASGSRITEVGAVRV-RGGEVVGEFATL---VNPGTPIPANITLLTGI 80

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E E   R+  F       ++  +N  FD  + +    R+  D       
Sbjct: 81  TQSMVASAPPME-EVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWP----- 134

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G    D L + RA+ A                + +L  LA   G+     H A  D  A
Sbjct: 135 -GYPVVDTLRLARAVLA-----------RGETRNHRLATLAAYFGVPVAPNHRALEDARA 182

Query: 184 TLALVWLIREKKPKL 198
           T+ ++  + E+   +
Sbjct: 183 TVGVLHGLVERLRPM 197


>gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974]
 gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1463

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNAAFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
 gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
          Length = 1464

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/452 (12%), Positives = 113/452 (25%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 425 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIEEFDEF---IDPGHPLSAFTTQLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +    F       ++  +N  FD  +    + R+          
Sbjct: 481 TNEHVRGA-KPLVQVLKEFQAF---CEGTVLVAHNATFDVGFMNANYERHGLP------K 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 ITQPVIDTLEFARNLY-------------PDFKRHGLGPLTKRFGVGLEHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 578 TGRLLFIFIKDVAEKHGVTNLKDLNIDLIDENSYKKARVKHATLYVKNQTGLKNMFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
               +Y + V     +      + L               +   V   ++         +
Sbjct: 638 LSGTKYFEGVPRIPKTVLDAHREGLILGSACSEGEVFDAVMSQGVDAAVEVAKYYDFIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357
           MP         +    D       +  L +      +  L                + + 
Sbjct: 698 MPPAIYAPLIAKEQVKDMDELQTIIKSLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIV 757

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411
             L  G   +      +         L   +   ++  L E  F      R       + 
Sbjct: 758 RSLGQGAMINRTIGHGEDAQPAP---LPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNA 814

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           L   E  + +E  K  L    I++ +  +  L
Sbjct: 815 L--AETFEPVEVVKGDLYTPFIDKAEETVAEL 844


>gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
 gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
          Length = 1463

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 115/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
              +   E  K  L    I++ +  +  L
Sbjct: 816 DIFEPV-EVVKGDLYTPFIDKAEETVAEL 843


>gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6]
 gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 1463

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 115/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
              +   E  K  L    I++ +  +  L
Sbjct: 816 DIFEPV-EVVKGDLYTPFIDKAEETVAEL 843


>gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
 gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
          Length = 1113

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNAAFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA]
 gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae JJA]
          Length = 1463

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNAAFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
 gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
          Length = 1463

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 114/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                               P  L   +   ++  L E  F        H L  +     
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAF--LGEELAHRLVIENTNAL 814

Query: 421 L------EHRKKMLTRSRIEEYKNKLQSL 443
                  E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141]
          Length = 1463

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
 gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
          Length = 1449

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/477 (15%), Positives = 139/477 (29%), Gaps = 50/477 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     DR  + A V+V +   +I+S E +                +T I
Sbjct: 428 TYVVFDVETTGLSAERDRLIEIAAVKV-KNGAEIDSFESY---INPQRPISELITRLTSI 483

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        + E E     + +    +  I+  +N +FD  +    F R   ++      
Sbjct: 484 TNDDVKDAPL-EKEVMTNFYNWLDKDD--ILVAHNAKFDLGFLDTCFERLGLEN------ 534

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L V RA              +  A    L +LA    +  V  H A  D  A
Sbjct: 535 KNNASIDTLFVSRA-------------ENKEAKRHGLSNLAKLYKVRLVQHHRAIYDTKA 581

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242
           T  +   + ++  +L    ++  ++    +L   ++ T    +        +    L++ 
Sbjct: 582 TAEIFVKMLDQLYELGIEYHNEIDEKIDLELAHKRSRTFPCSILVKNAKGLKDLFRLVSY 641

Query: 243 VAWHPRYK-DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
                       I  +L    R    + S      +F   + L          +      
Sbjct: 642 SCTKYLNSAKPTIPRSLLAQYREDLLIGSGNGDNEVF--EELLNSKEAKVEDIIDFYDYI 699

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            + P  +           D+    E L  L Q    +++        Y         +  
Sbjct: 700 EIQPKHHYANFIRNERIADNAELEEILKKLIQLAKKKEKIVVATGDCYYLDEYQHVYR-Q 758

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                         +            L  ++  L E    Y        L         
Sbjct: 759 ILRLTVKSNPGARDL-------KPMATLLTTEEMLKEFS--YLDEQLREELVIDNTHKIN 809

Query: 422 EHR------KKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +        K  L    IE   +++++L    +    G+E  E +   L + L  +I
Sbjct: 810 DMIELVVPLKDKLYTPNIEGAADEVRNLSYDMAHRIYGEELPEIVEKRLEKELASII 866


>gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
           15053]
 gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
           15053]
          Length = 1487

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/484 (15%), Positives = 140/484 (28%), Gaps = 60/484 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     D+  +   V+V       E    F                +TG
Sbjct: 446 DTFVVFDLETTGFSSIKDKIIEIGAVKV-EGGRITEKFSTF---VDPKIPIPFRITQLTG 501

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT Q  +    +EA     +  F        +  +N  FD  +                +
Sbjct: 502 ITDQMVMDAPEIEA----ALPAFLEFAGDAALVAHNAGFDVGFIDQNCR----------Y 547

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +    +  +D +       P   +          FKL  +A A  I   N H A  D  
Sbjct: 548 MDITPDFTAVDTVAMSRILLPTLSK----------FKLNVVAKALNISLENHHRAVDDAG 597

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     +   +   +     N+        I+ + P  HV  +         L   
Sbjct: 598 ATAEIFVRFVDMLKERGIHTLARLNQFGSSNANAIRKL-PSFHVIILAKNETGRVNLYKL 656

Query: 243 VA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300
           ++  H  Y         S   R  + L      +        L       I + V+    
Sbjct: 657 ISKSHLDYFGRQPRIPKSELSRHREGLIVGSACEAGELYQAILDDKSQERIARIVNFYDY 716

Query: 301 PILMPI--DYCKKEHFERWGIDHKRCLENLT--LLRQQTNLRDRFKAIYNKPYTSSSQDV 356
             + P+  +           I  +  L+N+   +++     R    A  +  +     +V
Sbjct: 717 LEIQPLGNNKFMIASERISKIHSEEDLKNVNRTIVKLGEKFRKPVVATCDVHFMDPEDEV 776

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRY---RARN----FP 409
             ++                  T  ++ + L L  +D  L E        +AR      P
Sbjct: 777 YRRIIMAGKGF-----------TDADEQAPLYLRTTDEMLAEF-EYLGSAKAREVVIDNP 824

Query: 410 HTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQ 465
           + +++   +     R        I +    L+ +    +    GDE  E +   L   L 
Sbjct: 825 NKIADSV-ERISPVRPDK-CPPVIPDSDQMLRDICYNKARSMYGDELPEVVTERLERELN 882

Query: 466 WVIP 469
            +I 
Sbjct: 883 SIIS 886


>gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
 gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
          Length = 1464

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 425 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNIIAEFDEF---INPGHPLSAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 481 TDDHVKNA-KPLVQVLKEFQEF---CKDTVLVAHNASFDVGFMNANYERHGLP------K 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 578 TGRLLFIFIKEVAEKHGVTDLARLNLDLISPDSYKKARVKHATIYVKNQVGLKNIFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 638 LSNTQYFEGVPRIPRTVLDAHREGLILGSACTEGEVFDAVVSQGVDAAVEVAKYYDFIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y     ++  ++  
Sbjct: 698 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEDEIYREIIV 757

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 758 RSLGQGAMINRTIGHGEAAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNAL-- 815

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 816 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 844


>gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
 gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
          Length = 1431

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/476 (15%), Positives = 133/476 (27%), Gaps = 49/476 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G     ++  + A V++    + I+  E F       +L     + +TGI
Sbjct: 413 TFVVFDVETTGLSAMYNKIIELAAVKI-YDGDVIDKFEAFA---DPKHLLSATTIDLTGI 468

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        E    + + +F       I+  +N  FD  +         ++       
Sbjct: 469 TDEMVRGKPDPE----QVVKEFMDWAGGSILVAHNASFDIGFLNATLRSGNHEE------ 518

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +     D L++ R                    + +L  LA    IE    H A  D  A
Sbjct: 519 STLPVIDTLELARV-------------LMPSLKNHRLNTLAKRFDIELTQHHRAIYDAEA 565

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+  + +   ++F          ++ K  DI    P          +          
Sbjct: 566 TGYLMLKLLQMADEMFNMKTHLSLNREMGK--DISRARPYHATVYAKNRTGLKNLYQLIS 623

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H ++   V+    S  +     L               L        K +       +
Sbjct: 624 LAHTKHVHRVVRTPRSQLVAHRDGLIIGSACDNGEVFDAALNKSDEDLAKVMRFYDFIEI 683

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P              +     E +  + +     D         +     D   +    
Sbjct: 684 QPPAMYGHLIEREIVQNELELRELIKKVIRVAEENDILPVATGNVHYLDQHDATYREVLI 743

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF----FRYRARNFPHTLSEKEKQD 419
                   +  R     P    T     SD     L      R    N       ++   
Sbjct: 744 RTQGGANMLNMRKQ-LPPAHFRTTQEMMSD--FKFLGPDVSERLVITN------SQQVAG 794

Query: 420 WLEHRK---KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           W E+     K L   +IE    +++SL    + +  GD   E +   L + L+ +I
Sbjct: 795 WFENIDIIPKDLFTPKIEGADEEVRSLSYDMAHQIYGDVLPEIVEARLEKELKSII 850


>gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
 gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
          Length = 1463

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDGAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 1441

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 74/477 (15%), Positives = 142/477 (29%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D   + A V++    E I+  E F       +      + +TG
Sbjct: 424 DTYVVFDVETTGLSAVYDTIIELAAVKI-HDGEIIDRFESFA---NPHHPLSATTINLTG 479

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         VE E  ++ H+        ++  +N  FD  +    + +          
Sbjct: 480 ITDDLVENAPEVE-EVLKKFHE---WAGDAVLVAHNASFDMGFLNVGYKKMGIG------ 529

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  LA    +E    H A  D  
Sbjct: 530 KASNPVIDTLELARFLY-------------PDMKNHRLNTLAKKFDVELTQHHRAIYDAE 576

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +   +     +D  N + + +    Q   P                    
Sbjct: 577 ATGYLLLKMLKHADEKGIEYHDQFN-DNMGQGNAYQRARPAHCTLLAQTEEGLKNIFKLV 635

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H  Y   V     S   +    +       +       ++                 
Sbjct: 636 SISHLEYFYRVPRIPRSVLQKHRAGILVGSGCDKGEVFEGMMQKSPDEVEDTAQFYDYLE 695

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL- 360
           + P              D K   E +  +++    L     A  N  Y + +  +  ++ 
Sbjct: 696 VHPKAVYAHLLELELVRDEKALEEIIGNIVKLGEKLDLPVVATGNVHYLNPNDKIYRKIL 755

Query: 361 --YDGFFADVDRQIMDRIL-RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
               G    ++R  +  +  RT  E L   +    D+            N     + +  
Sbjct: 756 VNSQGGANPLNRHQLPDVHFRTTNEMLDAFSFLGKDK-----AKEIVVEN-----TNRIA 805

Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
               E    K  L   +IE    +++S    ++ +  GD   E +   L + L+ +I
Sbjct: 806 DMIEEIKPIKDDLYTPKIEGADEEMRSMSYGMARKIYGDPLPEIVEARLEKELKSII 862


>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 1433

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
 gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
          Length = 1433

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYIDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
 gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
 gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus B4264]
 gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
          Length = 1433

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
 gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
 gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
 gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
          Length = 1435

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 473

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 474 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 523

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 524 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 570

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 571 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 630

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 631 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 688

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 689 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 748

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 749 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKI 798

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 799 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 856


>gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1464

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 110/402 (27%), Gaps = 46/402 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G      +  +   VRV    + +E    F                +T I
Sbjct: 439 SFVVFDLETTGFSPMSCQIIEIGAVRV-EDGKIVERFSTF---VNPKVPIPFRIEQLTSI 494

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                +   V+E      + +F    +  ++  +N  FD  +      R           
Sbjct: 495 NDSMVMDAPVIE----EVLPKFLEFCSGAVMVAHNADFDMSFVEFNCDRLGIP------- 543

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +  +  D + + R                     FKL  +A A  I   + H A  D   
Sbjct: 544 HDFTYIDTVGMAR-------------FLLPSLNRFKLDTVAKALEIPLGHHHRAVDDAAC 590

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           T  +    ++    +  E +     +  + +    +  T    +     A R N   +  
Sbjct: 591 TADIFVKFVKMLADREIENVDVLNCQGSVSENTVKKLPTYHAIILASSEAGRINLYKLVS 650

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KEVHLN 298
           +  H +Y +       S   +  + L      +        L+   P  I          
Sbjct: 651 L-SHLKYYNRRPRVPKSVFEQHREGLIIGSACEAGELYQALLRDASPQEIARLVNFYDYL 709

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           +   L    +   +         +   E N  +++     +    A  +  +     +V 
Sbjct: 710 EIQPLGNNKFMIADEKNDKVHSMEDLKEMNRKIVKLGEQFQKPVVATCDVHFMDPKDEVY 769

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
            ++                     +  + L L  ++  L E 
Sbjct: 770 RRIIMSGKGFG-----------DADDQAPLYLRTTEEMLEEF 800


>gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus
           UCN34]
 gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus
           UCN34]
 gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 1464

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/403 (13%), Positives = 108/403 (26%), Gaps = 34/403 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 425 TYVVFDVETTGLSAVNNELIQIAASKM-YKGNIVEQFDEF---INPGHHLSAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E E  +    F       ++  +N  FD  +    + R+          
Sbjct: 481 TDNHVRNAKPIE-EVLQMFQDF---CQDTVLVAHNATFDVGFMNANYERHGMPII----- 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFE--YLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++  +      + D   K           +             ++   L++
Sbjct: 578 TGRLLFIFLKEARENHNLTNMMDLNTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     +      + L               L   V   +K        
Sbjct: 638 --LSNVKYFEGVARIPRTVLDAHREGLLLGTACSEGEVFDAVLSSGVDAAVKVAKYYDFI 695

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP         +    D +   + +  L +    L     A  N  Y     ++  ++
Sbjct: 696 EVMPPALYAPLLAQGTIKDEEGIRQVIRDLLEVGRRLNKPVLATGNVHYIEPEDEIYREI 755

Query: 361 YDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
                                 P  L   +   ++  L E  F
Sbjct: 756 IVRSLGQGAPINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAF 798


>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 1433

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1440

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/475 (13%), Positives = 133/475 (28%), Gaps = 47/475 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            ++++D ET G     D   + A V++    E I+  E F       +      + +TGI
Sbjct: 424 TYIVFDVETTGLSAVYDTIIELAAVKI-HDGEIIDRFESFA---NPHHPLSATTIDLTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E    + +F       I+  +N  FD  +    + R           
Sbjct: 480 TDDDVRNAP----EVEEVLRRFKEWSQNDILVAHNASFDMGFLNTGYKRYGLG------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L++ R                    + +L  LA    +E    H A  D  A
Sbjct: 530 AANPVIDTLELAR-------------FLLPEMKNHRLNTLAKKFDVELTQHHRAIYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+  + ++  +     Y  +  + + K    Q   P          +          
Sbjct: 577 TGYLLIKMLKEVMQKGIE-YHNQLNDNMGKGNAYQRARPSHCTLLAQTEAGLKNLFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S   +  + +       R       ++                 +
Sbjct: 636 ISHMNYFYRVPRVPRSLLEKYREGILVGSGCDRGEVFEAMMQKGPEEAEDLASFYDYLEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P              D K   E   ++     L ++              +   ++Y  
Sbjct: 696 HPKAVYAHLIELELVRDEKALEE---IISNIVKLGEKLDIPVAATGNVHYLNPVDKIYRK 752

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW--- 420
              +             P+    ++   ++  L    F +  +     +  +        
Sbjct: 753 ILINSQGGANPLNRHQLPD----VHFRTTNEMLD--AFSFLGKEKAKEIVVENTNKVADM 806

Query: 421 ---LEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
              ++  K  L   +I+    +++++S +      GDE  E +   L + L+ +I
Sbjct: 807 IDSIKPIKDDLYTPKIDGADEEMRNMSYDMARRIYGDELPEIVEARLEKELKSII 861


>gi|320086501|emb|CBY96272.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 157

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%)

Query: 317 WGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQIMDR 375
           W +  + CL+NL +LR+   +RD+  AI+ +    ++S +VD+QLYDGFF+D DR  M  
Sbjct: 5   WELTRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLYDGFFSDADRAAMKI 64

Query: 376 ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEE 435
           +L T P  L  L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+++LT   +++
Sbjct: 65  VLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQ 124

Query: 436 YKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
           Y N+LQ LS +Y  D+ K GL+ +L++Y   ++
Sbjct: 125 YANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 157


>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
 gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1433

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 139/477 (29%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + ++ ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMILLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +     T++     L +               + +  +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLNPEDAMY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   +D  L    F     +    +     Q   
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKIA 797

Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1438

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/399 (11%), Positives = 106/399 (26%), Gaps = 38/399 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G  V  ++  + A V++  + ++I+    F                +T I
Sbjct: 420 TYVVFDIETTGLSVTQNKIIEIAAVKM-HEGKEIDRYATF---VNPHERIPYNIQQLTNI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          +    + +F +     ++  +N RFD  + +    +           
Sbjct: 476 NDEMVKDAP----DVEPVMKEFVAFAGDAVLVAHNARFDIGFIQATLRKMGLPEM----- 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L++ R                    + +L  L     +   + H A  D  A
Sbjct: 527 -TNPVLDTLELARL-------------LFPTMKNHRLNTLTSKYKVALESHHRAIDDTVA 572

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              ++  +     ++       R  + + K +           +      ++   L++  
Sbjct: 573 LTEVLNGLLNDAEQIKGLKMLDRLNDYVGKDLSTVRPFHCCIYALNPVGKKNLYKLVSM- 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S    +   L  +   ++       L        +         +
Sbjct: 632 -SHTEYFKRVPCIPKSKLSEMRDGLLIISGCEKGEFFEAVLNKSEEEAEEIAQFYDVLEI 690

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P+        ++           +  +      L     A  N  Y  +   +   +  
Sbjct: 691 QPLTMYMHLVEKQLVSGPDALKTAIRKVCDIGKRLDKPVIATGNVHYLETRDKLYRDITI 750

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
                               +    +L  +D  L E  F
Sbjct: 751 HGITG--------FSPLKDIRKPDAHLRTTDEMLAEFEF 781


>gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 905

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/401 (13%), Positives = 109/401 (27%), Gaps = 43/401 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     ++  +   V+V    E  E    F      +         +T 
Sbjct: 473 DTYVVFDLETTGFSPDKNKIIEIGAVKV-EHGEITERFSTF---VNPEVPIPYRIEELTS 528

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     +    +E      + QF       I+  +N  FD  +      R   +      
Sbjct: 529 IRDDMVIDAPKIE----TILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIE------ 578

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 + ++D +       P   +          FKL  +A A G+   N H A  D  
Sbjct: 579 ----KEFTIIDTVALARILLPQLNR----------FKLDTVAKALGVSLENHHRAVDDAG 624

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG--ASRSNTALI 240
            T  +     +          D  N+        I  M     +          +   LI
Sbjct: 625 CTAEIFVKFVKMLHDRGMETLDQVNQMGQASPETIMKMNTYHAIILATNDIGRINLYRLI 684

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLN 298
           +        K   I  +     R    L S   A  L+ +      +  +   +K     
Sbjct: 685 SLSHLTYYNKRPRIPKSEFVKYREGLLLGSACEAGELYRAIVGGRPEEEIIRLVKFYDYL 744

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           +   L   ++  K   E      +    N  +++          A  +  +     ++  
Sbjct: 745 EIQPLGNNEFMLKSDKESVSTIEELQDINRRIVKLGETFGKLVVATCDVHFLDPEDEIYR 804

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           ++                     +  + L L  ++  L E 
Sbjct: 805 RIIMAGKGFK-----------DADDQAPLYLRTTEEMLKEF 834


>gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
 gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
          Length = 1499

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/397 (13%), Positives = 104/397 (26%), Gaps = 38/397 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  +   V+V    +  E    F                +T IT
Sbjct: 462 YVVFDLETTGFSPIKDKIIEIGAVKV-ENGKITERFSTF---VNPKIPIPFRITQLTSIT 517

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q  +       +    + QF       ++  +N  FD  +                + +
Sbjct: 518 DQMVMDAP----DIDTVLPQFLEFIGDAVLVAHNASFDVGFIEQNCR----------YQD 563

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               +  +D +       P   +          FKL  +A A  I   N H A  D  AT
Sbjct: 564 IVPNFTSVDTVAMARILLPTLSK----------FKLNVVANALHISLENHHRAVDDAGAT 613

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +     E   +         N+        I+ + P  HV  +         L   ++
Sbjct: 614 AEIFVKFVEMLKERNINDLARLNQFGSNNADAIKKL-PTYHVIILALNEVGRVNLYTLIS 672

Query: 245 -WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
             H  Y         S   +  + L      +        L +       + V+      
Sbjct: 673 KSHLDYYARRPRIPKSELSKYREGLMVGSACEAGELYQAILNEKSEERIARIVNFYDYLE 732

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P+   +         + +   E+L  + ++                            
Sbjct: 733 IQPLGNNRFMIASDRIENVQS-EEDLKKINKKIVDLGDRFNKPVVGTCDVHFMDPEDEVY 791

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
                  +           ++ + L L  +D  L E 
Sbjct: 792 RRIIMAGKGFG------DADEQAPLYLRTTDEMLEEF 822


>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 1433

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
 gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
          Length = 1433

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
          Length = 1463

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I + +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFINKAEETVAEL 843


>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 1433

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 1437

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/475 (12%), Positives = 139/475 (29%), Gaps = 47/475 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  + A V++ +  + I+  E         +      + +T IT
Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKM-KDGKVIDQFEE---MIDPGFPLSELTINLTHIT 469

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E +  +   QF    +  I+  +N+ FD  +  N + R+           
Sbjct: 470 DDMVHGS-KSEVDVFKLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 519

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                 + KL  LA    +   + H A AD  AT
Sbjct: 520 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 566

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + ++  K++      +  +++      +   P   +      +           
Sbjct: 567 GYLLYALEKEAAKMYGMTTLNQLNDRVGAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSL 626

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            + +Y   V     S   ++ + L               ++        +        + 
Sbjct: 627 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSNGEVFTAMMQKGEAEARAKASFYDYLEVQ 686

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P+   +               + +  + +  +  ++        +     D    +Y   
Sbjct: 687 PLPVYQPLIEAGLIKGEAHLKDIIQKIIKIGSELEKPVVATGDAHYLDQHDA---IYRQI 743

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH- 423
                         + P+    ++   +   L +  +        H L            
Sbjct: 744 LIHSQGGANPLNRHSLPD----VHFRSTSEMLTDFSW--LGEEKAHELVVDNSNLIANWV 797

Query: 424 ------RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
                  K  L    +   +  L+    + + E  GD   + +   L + L+ +I
Sbjct: 798 DDDITPVKDKLYTPEVPGVEENLKHDVMTTAHELYGDPLPDIVAQRLDKELKSII 852


>gi|332204293|gb|EGJ18358.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47901]
          Length = 1463

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPILATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
 gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
          Length = 1463

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/401 (12%), Positives = 100/401 (24%), Gaps = 30/401 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNIIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLKQVLQEFQEF---CQDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTNLARLNIDLISPDSYKKARVKHATIYVKNQIGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   V   ++         +
Sbjct: 637 LSNTQYFEGVPRIPRTVLDAHREGLILGTACAEGEVFDTILSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D       +  L+     L     A  N  Y     ++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDLAELETIIKNLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
                               P  L   +   ++  L E  F
Sbjct: 757 RSLGQGAVINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAF 797


>gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
          Length = 1463

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSVFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334]
 gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           casei ATCC 334]
          Length = 1444

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/475 (12%), Positives = 139/475 (29%), Gaps = 47/475 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  + A V++ +  + I+  E         +      + +T IT
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGKVIDQFEE---MIDPGFPLSELTINLTHIT 476

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E +  +   QF    +  I+  +N+ FD  +  N + R+           
Sbjct: 477 DDMVHGS-KSEVDVFKLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADI------ 526

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++ R ++                 + KL  LA    +   + H A AD  AT
Sbjct: 527 DNPVIDTLELSRMLH-------------PERKNHKLDTLAKQYKVSLEHHHRANADAEAT 573

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + ++  K++      +  +++      +   P   +      +           
Sbjct: 574 GYLLYALEKEAAKMYGMTTLNQLNDRVGAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSL 633

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            + +Y   V     S   ++ + L               ++        +        + 
Sbjct: 634 SNVKYFYRVPRVPRSQLQKLREGLLVGSACSNGEVFTAMMQKGEAEARAKASFYDYLEVQ 693

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P+   +               + +  + +  +  ++        +     D    +Y   
Sbjct: 694 PLPVYQPLIEAGLIKGEAHLKDIIQKIIKIGSELEKPVVATGDAHYLDQHDA---IYRQI 750

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH- 423
                         + P+    ++   +   L +  +        H L            
Sbjct: 751 LIHSQGGANPLNRHSLPD----VHFRSTSEMLTDFSW--LGEEKAHELVVDNSNLIANWV 804

Query: 424 ------RKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
                  K  L    +   +  L+    + + E  GD   + +   L + L+ +I
Sbjct: 805 DDDITPVKDKLYTPEVPGVEENLKHDVMTTAHELYGDPLPDIVAQRLDKELKSII 859


>gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens
           QYMF]
 gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens
           QYMF]
          Length = 1432

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/480 (14%), Positives = 141/480 (29%), Gaps = 56/480 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + ++++D ET G     DR  +   V++ +  + I+           +     + V +TG
Sbjct: 418 DEYIVFDIETTGLSNRNDRITEIGAVKI-KDSQVIDKFSAL---VNPEMKIPSKIVELTG 473

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    +    +  +    +  F +   +  +  +N  FD  + R    R          
Sbjct: 474 ITDDMVVDKQTI--DVI--LPGFLAFIGSSPVVAHNSDFDMGFIRENANR-------IER 522

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L + R                      +L  +A    +   N H A  D  
Sbjct: 523 TIENQVIDTLKLSRI-------------LLPQLKRHRLNSIAKELNVSLENHHRAVDDAQ 569

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241
           AT  +     E   +   Y  +  N   ++ +   +  T  + +        ++   +I+
Sbjct: 570 ATAEIFVKFIELLKQKEVYTLEEVNTKLVKDVDYKKLDTYHIMIYAKNQKGLKNLYQIIS 629

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
                  YK   +  ++    R    + +   A  L+ S    K    +  K        
Sbjct: 630 ESHLEYFYKKPRVPKSILTKYREGLLIGTACEAGELYKSILGNKPESDIE-KTASYYDYL 688

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            + PI   +    +      +        +    N  +            ++ DV     
Sbjct: 689 EIQPISNNQFLLEKGMVNTTEELQNINKKIVALGNKINL--------PVIATGDVHFLDP 740

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRAR--------NFPHTLS 413
           +                T  +  + L L  +D  L E  FRY           N P  L+
Sbjct: 741 NDEVFRKILMAGQGF--TDADNQAPLYLKTTDEMLDE--FRYLGSKTAKDVVVNNPRKLN 796

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
           E+ ++              IE    +L+ +    +    G+   E +   L + L  +I 
Sbjct: 797 EEIEKLI--PIPDGTFPPEIEGSDEELRRMCYEKAERIYGNPIPEIVKTRLDKELNSIIS 854


>gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 970

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 71/475 (14%), Positives = 142/475 (29%), Gaps = 45/475 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +     T++     L +               + +  +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLNPEDAMY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQD 419
                            + P     ++   +D  L    F     AR    T ++K    
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSFLGEDVAREIVVTNTQKIASL 799

Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
             +    K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 800 IGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17570]
          Length = 1463

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNAAFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I + +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFINKAEETVAEL 843


>gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1464

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/406 (13%), Positives = 107/406 (26%), Gaps = 40/406 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 425 TFVVFDVETTGLSAVNNDLIQIAASKM-YKGNIVEQFDEF---INPGHHLSAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E E  +    F       ++  +N  FD  +    + R+          
Sbjct: 481 TDNHVRNAKPIE-EVLQMFQDF---CQDTVLVAHNATFDVGFMNANYERHGMPII----- 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFE--YLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++  +      + D   K           +             ++   L++
Sbjct: 578 TGRLLFIFLKEARENHNLTNMMDLNTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     +      + L               L   V   +K        
Sbjct: 638 --LSNVKYFEGVARIPRTVLDAHREGLLLGTACSEGEVFDAVLSSGVDAAVKVAKYYDFI 695

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355
            +MP         +    D +   + +  L +      +  L                + 
Sbjct: 696 EVMPPAIYAPLLAQGTIKDEEGIRQVIRDLLEVGRRLNKPVLATGNVHYIEPEDEIYREI 755

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
           +   L  G   +      +         L   +   ++  L E  F
Sbjct: 756 IVRSLGQGAPINRPIGRGEDAQPAP---LPKAHFRTTNEMLDEFAF 798


>gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 1433

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEKWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDIGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057]
          Length = 1462

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       Y        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGYPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      +      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|296133462|ref|YP_003640709.1| DnaQ family exonuclease/DinG family helicase [Thermincola sp. JR]
 gi|296032040|gb|ADG82808.1| DnaQ family exonuclease/DinG family helicase [Thermincola potens
           JR]
          Length = 994

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/467 (13%), Positives = 128/467 (27%), Gaps = 63/467 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N FV  D ET G + A     + A VR   +   +E+ +        +     +   +T
Sbjct: 3   KNTFVAVDIETTGLNPADSEIIEVAAVRF-AEGRVLETFQSL---VKPEKKIPLKIQQLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI            AE +  + +F    ++ IIG+N             +   +  +   
Sbjct: 59  GINESMVADAPAC-AEVTGMLAEFV--HDSIIIGHNI-----------GFDLNFLQHYHP 104

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180
                  +D L + R ++  +               ++L +L  A  I+ + + H A  D
Sbjct: 105 VFIRARYYDTLPLARLVWPKAHG-------------YRLANLVEALKIQLNGSPHRAFHD 151

Query: 181 VYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             A   +  L  E       E L         +       +   + + G   A +  +  
Sbjct: 152 ALAAKEVFCLALEVLRGLGTENLLRMLEIIGAKSDWPYYEIISALALQGAGQAKKGYSYP 211

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
                   + + + +            +   V   + L  S ++L        +      
Sbjct: 212 FLAGLLEGKKEFASLF-----PNADSAENSPVDAQEELGLSEEDLSAFFGPEGRLGK--- 263

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
              +MP    + +  +               ++   T        +    Y + S     
Sbjct: 264 ---VMPNYQYRPQQVQMLKEILHCFKSGLYAVIEAGTGTGKSLAYLLPALYWNKSTGAKV 320

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
            +        ++     I        + +N      R   L  R                
Sbjct: 321 VVSTHTINLQEQLWNQDIPNLERVIGAKINAALVKGRTNYLCLR---------------- 364

Query: 419 DWLEHRKKM-LTRSRIEEYKNKLQ-SLSGEYKGDEGKEGLINALYEY 463
            W +  K    +  R   +  ++   L+    GD+ +  L     EY
Sbjct: 365 KWEQRIKDRDWSGDREINFYLRILVWLNETATGDKTEINLQGEEQEY 411


>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
 gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
          Length = 1435

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 473

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 474 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 523

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 524 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 570

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + L  ++      ++   L++
Sbjct: 571 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVS 630

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 631 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 688

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 689 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 748

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 749 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKV 798

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 799 ASLIGDVRPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 856


>gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
 gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
          Length = 1433

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + L  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKV 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVRPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 1433

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 1433

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKV 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVRPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 1435

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 473

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 474 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 523

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 524 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 570

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + L  ++      ++   L++
Sbjct: 571 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVS 630

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 631 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 688

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 689 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 748

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 749 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDKAKEVVVTNTQKV 798

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 799 ASLIGDVRPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 856


>gi|332203439|gb|EGJ17506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47368]
          Length = 1463

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNAAFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I + +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFINKAEETVAEL 843


>gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41301]
          Length = 1463

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus
           pneumoniae 670-6B]
 gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 670-6B]
 gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17545]
          Length = 1463

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 1463

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|317132568|ref|YP_004091882.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense
           YUAN-3]
 gi|315470547|gb|ADU27151.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense
           YUAN-3]
          Length = 1457

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 63/184 (34%), Gaps = 28/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV +D ET G +   DR  +   VR+ R  E  E  ++F           P    +TGIT
Sbjct: 443 FVAFDLETTGLNRENDRITEIGAVRI-RNGEIGERFDLF---VNPHKPIPPRITELTGIT 498

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE    + QFF+     ++  +N  FD  + R    R   +        
Sbjct: 499 DDMVKDA----AEEDEALRQFFAFCGDAVLVAHNAEFDTGFCRAAAARCGMEFPYT---- 550

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + R +               G  ++KL  +A    +   N H A  D +  
Sbjct: 551 ---YMDSIPLCRTV-------------LPGLKNYKLDTVAGGLHLPPFNHHRASDDAFVL 594

Query: 185 LALV 188
             ++
Sbjct: 595 GQIL 598


>gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
 gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
          Length = 1463

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
 gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
 gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH187]
 gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
          Length = 1433

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 138/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +     T++     L +               + +  +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLNPEDAMY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   +D  L    F     +    +     Q   
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKIA 797

Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
 gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
          Length = 1433

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 139/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F S      +  +N  FD  +    F +   D      
Sbjct: 472 ITDDMLTDAP----EVGEVFKKFESWMGDHTLVAHNASFDMGFLNVGFKKCGLD------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KPKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHNQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     +    ++  L    F          +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VYFRTTNEMLDCFSF--LGEEKAKEIVVTNTQKV 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
 gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North
           America USA6153]
 gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
          Length = 1433

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames]
 gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne]
 gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L]
 gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066]
 gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055]
 gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum]
 gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94]
 gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Ames]
 gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Sterne]
 gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
 gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
           str. CI]
          Length = 1433

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1433

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
 gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B]
 gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
          Length = 1433

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINIGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Taiwan19F-14]
          Length = 1463

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|332202187|gb|EGJ16256.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41317]
          Length = 1463

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/449 (13%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLDRLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    ++V  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEVYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 1492

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 73/480 (15%), Positives = 127/480 (26%), Gaps = 52/480 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G   A DR  +   V++      ++    F      +     E   +T 
Sbjct: 461 DTFVVFDIETTGFSAAEDRIIEIGAVKI-TDGAIVDRFSTF---VNPEVPIPFEIQQLTH 516

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    L    +E E       F        +  +N  FD  +      R          
Sbjct: 517 ITDDMVLEAPKIE-EALPAFLDFV---GESALVAHNAGFDVGFIEQNCVRLGR------- 565

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               +  D + + R                   + +KL  +A A  I   N H A  D  
Sbjct: 566 SRTFTSVDTVGLARV-------------LLPTLSKYKLNIVAKALNISLENHHRAVDDAA 612

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIA 241
           AT  +     E   +         N         I+ M      +       R N   + 
Sbjct: 613 ATAEIYVKFIEMLKERGMTTLKEVNAFGDMNPDAIKKMPTYHAIILAKNEVGRVNLYTLV 672

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300
            +  H +Y         S   +  + L      +        L G     I K V     
Sbjct: 673 SL-SHLKYFSRRPRIPKSEFNKYREGLILGSACEAGELYRALLDGKSEETIAKIVDYYDY 731

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             + PI             + K          +  N R        +    ++ DV    
Sbjct: 732 LEIQPIGNNAFMIASEKQRNIKS-----EEDLKNMNRRIVQLGEKFQKPVVATCDVHFMD 786

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
            D                +  +    L L  ++  L E    Y        +        
Sbjct: 787 PDSEVYRRIIMTGKGF--SDADSQPPLYLRTTEEMLEEFS--YLGSKKAEEVVITNTNKI 842

Query: 421 LEHRKKMLT-------RSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
            +   + ++          IE+    L+++    +    G+E  E ++  L   L  +I 
Sbjct: 843 ADSI-ERISPVRPDKCPPVIEDSDQTLRNICYDKAHSMYGEELPEIVVERLERELNSIIS 901


>gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
 gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
          Length = 1432

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/481 (12%), Positives = 136/481 (28%), Gaps = 55/481 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++  FV++D ET G     D+  +   V+V + +E ++           +     +   +
Sbjct: 414 LSQTFVVFDLETTGFSNKNDKITEIGAVKV-KNFEIVDRFNEL---INPEKDISYKVQEL 469

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT         +E E   +  +F       ++  +N  FD  +          +    
Sbjct: 470 TGITNDLIKDKPTIE-EILPKFMEFV---GDSVLVAHNAEFDIGFINQKCKEMNIEF--- 522

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D L + R                     FKL +L    G+   N H A  D
Sbjct: 523 ----KNKSVDTLMLARI-------------LLPHLKRFKLNNLTKELGVPLHNHHRAVDD 565

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +     +   K         N+              +  ++      ++   ++
Sbjct: 566 AAATAQIFIKFLDMLQKKGAKKLSDVNEVLGGIDYTKLKTKHITLIAQNLVGVKNLYKIV 625

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT--SHDELKGLVPVPIKEVHLN 298
           +    +  Y+   I  ++  + +    + S   A  +F     ++    +   I      
Sbjct: 626 SDAHVNHFYRAPRILKSVLLEHKEGIIVGSACEAGEVFQAVKQNKNDDEIKEIIDLYDYI 685

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           +   +    +  +    +   + +     +  + ++           +      +     
Sbjct: 686 EVMPIDNNRFMIRNGEVKDEDELRDLNRRMIEIAKKFGKIPVATGDVHFIDKHEAVFRRV 745

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
             Y   F+  D +       T             D  L E  F+Y      + +  +   
Sbjct: 746 LKYSQGFSLDDEETYLHFRTT-------------DEMLEE--FKYLGEELAYEVVVENTN 790

Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +  +  L          IE    +L+ +    +    GD   E +   L   L  +I
Sbjct: 791 KVADMVEDFLPIPNETFPPVIEGSDTELREMCYNKAKRIYGDPMPEVVKKRLDRELNSII 850

Query: 469 P 469
            
Sbjct: 851 S 851


>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
 gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
          Length = 1433

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 67/477 (14%), Positives = 139/477 (29%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V++ +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKI-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +          
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGL------A 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +    ++ L +     D+        +    +D    +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDQEDA---MY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   +D  L    F     +    +     Q   
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDKAKEIVVTNTQKIA 797

Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 1475

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 78/470 (16%), Positives = 143/470 (30%), Gaps = 45/470 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G     D   +   VR  R  E ++S + F           PE   +T IT
Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRC-RGGEIVDSFQSF---VRPTKPVPPEVQKLTNIT 509

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P           E +  +  FF      I+  +N +FD  + R    +   + +      
Sbjct: 510 PDMLEGAP----EAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKYLGEEFAN---- 561

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + RA+                  S  L  L     +  V+ H A AD    
Sbjct: 562 --PVLDTLTLARAV-------------LPHMRSHSLAALTKELQVPLVDHHRADADAKTA 606

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             ++  + E+   +       R    L K I+++ + P      +   +           
Sbjct: 607 AMVLMKLLERAEGVETVADLNR----LTKGINVEQLRPYHTTVLVKTQAGMKNLYKLISL 662

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL-NKCPIL 303
            H  Y +       S   +  + L               ++G+    ++++        +
Sbjct: 663 SHIEYFNRTPRVPRSELEKHREGLLVGSSTYGGQLFDALIRGVPDEELEQMASWYDYLEI 722

Query: 304 MPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           +P D              ++ L  N  +      L     A+ +  +    Q V  ++  
Sbjct: 723 LPRDCLAFLLESGQVNSEEQLLSLNRRIYELGKKLGKPVCAVSDAHFLDPHQQVFRRILK 782

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                 D       LRT  E L           L E          P+ ++ + ++  ++
Sbjct: 783 HGIGFRDEYDRPFYLRTTQEMLDEFAY------LGEQAAYEVVVENPNAIAAQIEK--VK 834

Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                L    +E    + + LS E      GD   E + + L + L  +I
Sbjct: 835 VVPDKLHPPVLEGSVEETRRLSWEKVKRVYGDPVPEKIAHRLEKELNAII 884


>gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104]
          Length = 1463

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
 gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200]
 gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
          Length = 1463

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDGAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|89099885|ref|ZP_01172757.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
 gi|89085443|gb|EAR64572.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
          Length = 934

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 72/209 (34%), Gaps = 28/209 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+N +V+ D ET G      D+  QFA V V    + I+                     
Sbjct: 1   MSNKYVVVDLETTGNSAKKGDKIIQFAAV-VMEGGKIIDQYSSL---LNPGKEIPAFIEE 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TG+         V  AE + ++ +            +N+ FD  + +       +  + 
Sbjct: 57  LTGLNDSMVSDAPV-FAEIAPKVMELLED---AYFVAHNVLFDLSFLQEELLDAGFPGFY 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D +++ R +   S              S+KL DL+   GI H   H A +
Sbjct: 113 ------GPVIDTVELARTVLPCSD-------------SYKLSDLSAKEGIMHDRPHQADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK 208
           D YAT  L+ +  E+  +L         K
Sbjct: 154 DAYATAKLLHIFLERLEELPLTTIKQLLK 182


>gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 1492

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 73/480 (15%), Positives = 127/480 (26%), Gaps = 52/480 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G   A DR  +   V++      ++    F      +     E   +T 
Sbjct: 461 DTFVVFDIETTGFSAAEDRIIEIGAVKI-TDGAIVDRFSTF---VNPEVPIPFEIQQLTH 516

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    L    +E E       F        +  +N  FD  +      R          
Sbjct: 517 ITDDMVLEAPKIE-EALPAFLDFV---GESALVAHNAGFDVGFIEQNCVRLGR------- 565

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               +  D + + R                   + +KL  +A A  I   N H A  D  
Sbjct: 566 SRTFTSVDTVGLARV-------------LLPTLSKYKLNIVAKALNISLENHHRAVDDAA 612

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIA 241
           AT  +     E   +         N         I+ M      +       R N   + 
Sbjct: 613 ATAEIYVKFIEMLKERGMTTLKEVNAFGDMNPDAIKKMPTYHAIILAKNEVGRVNLYTLV 672

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300
            +  H +Y         S   +  + L      +        L G     I K V     
Sbjct: 673 SL-SHLKYFARRPRIPKSEFNKYREGLILGSACEAGELYRALLDGKSEETIAKIVDYYDY 731

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             + PI             + K          +  N R        +    ++ DV    
Sbjct: 732 LEIQPIGNNAFMIASEKQRNIKS-----EEDLKNMNRRIVQLGEKFQKPVVATCDVHFMD 786

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
            D                +  +    L L  ++  L E    Y        +        
Sbjct: 787 PDSEVYRRIIMTGKGF--SDADSQPPLYLRTTEEMLEEFS--YLGSKKAEEVVITNTNKI 842

Query: 421 LEHRKKMLT-------RSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
            +   + ++          IE+    L+++    +    G+E  E ++  L   L  +I 
Sbjct: 843 ADSI-ERISPVRPDKCPPVIEDSDQTLRNICYDKAHSMYGEELPEIVVERLERELNSIIS 901


>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
 gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
          Length = 1435

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 67/477 (14%), Positives = 139/477 (29%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V++ +  E I+  E F              + +TG
Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKI-KGGEIIDRFESFA---NPHQPLSATIIELTG 473

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +          
Sbjct: 474 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGL------A 523

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 524 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 570

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 571 ATGYLLVKMLKDVIEKGFEYHNQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 630

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 631 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 688

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +    ++ L +     D+        +    +D    +Y
Sbjct: 689 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDQEDA---MY 745

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   +D  L    F     +    +     Q   
Sbjct: 746 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDKAKEIVVTNTQKVA 799

Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 800 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 856


>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
 gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
          Length = 1433

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 141/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    +       E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLIDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKI 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
 gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
          Length = 1433

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDGMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKV 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
 gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
          Length = 1438

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/444 (11%), Positives = 118/444 (26%), Gaps = 42/444 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G  +  ++  + A V++  + ++I     F                +T I
Sbjct: 420 TYVVFDIETTGLSITANKIIELAAVKM-HEGKEIGRYATF---VNPHERIPYHIQQLTNI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        E    + +F       ++  +N RFD  + +        D+    + 
Sbjct: 476 NDDMVKDAP----ELEPVLKEFVEFVGDGVLVAHNARFDMGFIQAALKNAGMDTLENPY- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R ++              G  + +L  LA    +   + H A  D  A
Sbjct: 531 -----LDTLELARLVH-------------PGLKNHRLNTLADKYKVLLESHHRAIDDTIA 572

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              ++  +     K        R  + +   +           +      ++   LI+  
Sbjct: 573 LAGILNGLLSDVDKTKGVKMLDRLNDYVGTDLSNTRPFHCGIYALNMTGKKNLYKLISM- 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S    +   L  +   ++       L        +         +
Sbjct: 632 -SHTEYFKRVPCIPKSKLQEMRDGLLVLSGCEKGEFFETVLNKTEEEAEEIAGFYDVLEI 690

Query: 304 MPIDYCKKEHFERWGIDHKRCL-ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P+        +      +        ++R    L     A  N  Y      +   +  
Sbjct: 691 QPLTMYMHLVDKGLVGSPEEIKTAISKVVRIGEKLNKPVIATGNVHYLEPRDKLFRDITI 750

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQDW 420
                               +    +   ++  L E  F    +      T + +    +
Sbjct: 751 HGITG--------FSPLKDMRKPDAHFRTTEEMLQEFEFLGQDKCYEVVVTNTSELADRF 802

Query: 421 L--EHRKKMLTRSRIEEYKNKLQS 442
              E     L    ++    ++++
Sbjct: 803 EELELFPDKLFTPILDGADEEIRN 826


>gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
 gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
          Length = 1463

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAEYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDLEELQTIIKSLIEVGDRLGKHVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 1433

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 69/477 (14%), Positives = 140/477 (29%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +    ++ L +     D+        +    +D    +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGGTLDKPVVATGNVHYLDPEDA---MY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   +D  L    F     +    +     Q   
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKIA 797

Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|332365112|gb|EGJ42875.1| DNA polymerase III PolC [Streptococcus sanguinis SK1059]
          Length = 1462

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLCKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      +      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 911

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 56/401 (13%), Positives = 109/401 (27%), Gaps = 43/401 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     ++  +   V+V    E  E    F      +         +T 
Sbjct: 479 DTYVVFDLETTGFSPDKNKIIEIGAVKV-VHGEITERFSTF---VNPEVPIPYRIEELTS 534

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     +    +E      + QF       I+  +N  FD  +      R   +      
Sbjct: 535 IRDDMVIDAPKIE----TILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIE------ 584

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 + ++D +       P   +          FKL  +A A G+   N H A  D  
Sbjct: 585 ----KEFTIIDTVALARILLPQLNR----------FKLDTVAKALGVSLENHHRAVDDAG 630

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG--ASRSNTALI 240
            T  +     +          D  N+        I  M     +          +   LI
Sbjct: 631 CTAEIFVKFVKMLHDRGMETLDQVNQMGQASPETIMKMNTYHAIILATNDIGRINLYRLI 690

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLN 298
           +        K   I  +     R    L S   A  L+ +      +  +   +K     
Sbjct: 691 SLSHLTYYNKRPRIPKSEFVKYREGLLLGSACEAGELYRAIVGGRPEEEIIRLVKFYDYL 750

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           +   L   ++  K   E      +    N  +++          A  +  +     ++  
Sbjct: 751 EIQPLGNNEFMLKSDKESVSTIEELQDINRRIVKLGETFGKLVVATCDVHFLDPEDEIYR 810

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           ++                     +  + L L  ++  L E 
Sbjct: 811 RIIMAGKGFK-----------DADDQAPLYLRTTEEMLKEF 840


>gi|332298225|ref|YP_004440147.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
           12168]
 gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
           12168]
          Length = 186

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 27/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F  +D ET G     +R  +   +R D+    I   ++            P A  I  IT
Sbjct: 23  FTAFDTETTGLKPEYERLIEIGAIRFDKNG-IIARYDIL---INPGKPIPPGASAINNIT 78

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   ++E      +  F +     ++  +N  FD  +      R+ +         
Sbjct: 79  DDMVRNCPLIE----SVLPDFLTFVRDSVLVAHNAGFDLSFVNKELERSGF------NPL 128

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N+  D + + R             SR     + KLQ LA   GI+  NAH A+ D    
Sbjct: 129 KNNAADTVHLAR-------------SRFPQLPNHKLQSLAAYFGIDVRNAHRAEDDARVC 175

Query: 185 LALVWLI 191
           + +    
Sbjct: 176 MEVFLRC 182


>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
 gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
          Length = 1433

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 67/477 (14%), Positives = 139/477 (29%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V++ +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKI-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGIIVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +     T++     L +  +            D +  +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLEKPVVATGNVHYLDPEDAMY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   +D  L    F     +    +     Q   
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDKAKEIVVTNTQKVA 797

Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160]
          Length = 1462

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/452 (12%), Positives = 117/452 (25%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +    +    D +     +  L +      +  L                + + 
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411
             L  G   +      +      P  L   +   ++  L E  F      +      P+ 
Sbjct: 756 RSLGQGAMINRTIGHGE---NAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQ 812

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           L   E  + +E  K  L    IE+ +  +  L
Sbjct: 813 L--AETFEPVEVVKSDLYTPFIEKAEETVAEL 842


>gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 1462

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 119/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   + +           L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKYGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      +      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
 gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
          Length = 1503

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 55/403 (13%), Positives = 107/403 (26%), Gaps = 46/403 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + ++++D ET G     D+  +   V+V +    +E    F            E   +T 
Sbjct: 465 DTYIVFDIETTGFSAIKDKIIEIGAVKV-KDGAIVEKFSTF---VNPKRPIPFEITQLTS 520

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  L    +E      + +F       ++  +N  FD  +                +
Sbjct: 521 ITDEMVLDAPDIE----SVLPEFLEFVGDGVLVAHNAGFDVGFIEQNCR----------Y 566

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 +  +D +       P   +          +KL  +A A GI   N H A  D  
Sbjct: 567 QEIEPDFVSVDTVALARVLLPTLSK----------YKLNIVAKALGISLENHHRAVDDAG 616

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     E             N+     +  I+ + P  H+  +         L   
Sbjct: 617 ATAEIFVKFVEMLKDRNITTLKEMNRFGDMNVNAIRKL-PTHHIIILVKNDIGRFNLYQL 675

Query: 243 V-AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KEVHL 297
           + A H  Y         S   +  + L      +        L    P  +    +    
Sbjct: 676 ISASHLTYFARRPRIPKSLLNQHREGLIIGSACEAGELYQAILNQKSPQAVARLAEFYDY 735

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
            +   L    +             +     N  ++      +    A  +  +     +V
Sbjct: 736 YEIQPLGNNQFMIDSDRYGDINSKEDLQNINREIVSLGEKFKKPVVATCDVHFLDPEDEV 795

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
             ++                     +    L L  +D  L E 
Sbjct: 796 YRRIIMAGKGFG-----------DADTQPPLYLRTTDEMLEEF 827


>gi|239617281|ref|YP_002940603.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239506112|gb|ACR79599.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 1430

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 71/474 (14%), Positives = 140/474 (29%), Gaps = 42/474 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + +V++D ET G D + D   +   V++ +  E I     F      +     +   I
Sbjct: 415 MNSIYVVFDLETTGLDPSADEIIEIGAVKL-KGTEVIGEFSSF---VKPERNLSEKVTRI 470

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ ++        +E   +  +F       ++  +N  FD  + RN   + + + ++ 
Sbjct: 471 TGISDRELEDAP-SLSEVLPKFLEF---CKDSVLVAHNATFDYRFVRNAVKQLYNEDWKL 526

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            + +  +            + S    +  S D+     KL D            H A  D
Sbjct: 527 PYIDTLAL-----------SKSLLKSKSYSLDNVVKRLKLGDF---------EHHRASED 566

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
              T  +   +     K             LRK I+I ++ PL         +       
Sbjct: 567 ARITAEVFKKLLSMAKKRGIK--KIAELENLRKHINISSLRPLHVTILAKNKTGLRNLYE 624

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNK 299
                H +Y         S  +   + L           S   L G     ++E+     
Sbjct: 625 LVTLSHTKYFYKKPRIPKSILLEKREGLIIGSACISGELSKAYLSGANAAELEEIAKFFD 684

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              +MP+D       E                R    L        +  +      +   
Sbjct: 685 FIEIMPLDVLDYNEAEAHITRENLKNMYREFYRIGKKLNIPVVMTGDVHFLEPEDAIYRA 744

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLP-FSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           + +      +      +     E++       F D    E+ +    +N           
Sbjct: 745 VLEAAQEYQNFDKQPSLYLRTTEEMLEAAKEIFEDE---EIAYEVVVKNSRKI---ALMV 798

Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           + +   +  L    IE    +++ L    + E  GD   E +   L + L+ +I
Sbjct: 799 ENIAPIRGKLHPPIIEGADEQVRELTYKTAHEIYGDPLPEIVEKRLEKELRAII 852


>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
 gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
          Length = 1433

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDGMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     ++   +D  L    F     +    +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKV 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6]
 gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39]
 gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6]
 gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae D39]
          Length = 1463

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVSRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
 gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
          Length = 1010

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 26/184 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D   + + V+V    +                   P A  + GIT
Sbjct: 25  YVVFDLETTGISSKYDEVIEISAVKV-EAGQVTGEFSTL---VNPGRKIPPAASRVNGIT 80

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  +E       F    +  ++G+N   FD  +                +  
Sbjct: 81  DKMVAGA-LPFSEVLGDFFAF--AGDFVLVGHNINSFDMKF---------LYRDAKKYFR 128

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +D +    A  P+              +L DLA   GI    AH A  D +  
Sbjct: 129 KVPDNDYVDTLLLARAALPELSH----------HRLVDLAEHYGISAKGAHRALNDCHMN 178

Query: 185 LALV 188
             + 
Sbjct: 179 QKVY 182


>gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408]
          Length = 1462

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/451 (12%), Positives = 117/451 (25%), Gaps = 42/451 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARN--------FPHTL 412
                               P  L   +   ++  L E  F               P+ L
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAF--LGEELAKKLVITNPNQL 813

Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
              E  + +E  K  L    I++ +  +  L
Sbjct: 814 --AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547]
 gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus
           sedentarius DSM 20547]
          Length = 584

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 71/201 (35%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G   A     +F  V+V R  E +   +    +PA      P    +TGI
Sbjct: 26  TFVVFDLETTGTSSADSEITEFGAVKV-RGGEVVGEFQTL-VRPAAG--IPPYIQVLTGI 81

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E    + +  F       ++  +N RFD  + R    R    +      
Sbjct: 82  TTAMVSAAPSIE----QVLPNFLEFVGDAVLVAHNARFDTAFVRRACERTGRPAP----- 132

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            GN   D + + R +                  + KL  LA     E   +H A  D  A
Sbjct: 133 -GNPVLDTVHLARQL-----------LPRPEVPNHKLSTLAAYFRAETTPSHRALDDARA 180

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   L  +  +
Sbjct: 181 TVDVLHGLIERVGPLGVHSLE 201


>gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
          Length = 1463

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVSRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1]
          Length = 1462

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/451 (12%), Positives = 117/451 (25%), Gaps = 42/451 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARN--------FPHTL 412
                               P  L   +   ++  L E  F               P+ L
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAF--LGEELAKKLVITNPNQL 813

Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
              E  + +E  K  L    I++ +  +  L
Sbjct: 814 --AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 1369

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 76/248 (30%), Gaps = 28/248 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G     DR  +   V+V    +  E           + +   +   ITGI
Sbjct: 352 SFVVFDLETTGLSKYKDRITEIGAVKV-ENGKITEEYNQL---VNPEMVISEKITDITGI 407

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       ++ E  +    F       I+   N  FD  + +   +R   +       
Sbjct: 408 TNEMVEDCPKID-EVMK---DFLKFCGDSILVGQNTDFDVGFIKENCFRMEIEFNPL--- 460

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   LD +    A   D  +          F L  +A    I   N H A  D  A
Sbjct: 461 -------YLDTLPMARALFSDMKK----------FSLDKIARKLEIPAFNHHRASDDARA 503

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +   + ++  K+        NK +  +         +   +      ++   LI+  
Sbjct: 504 TAQIFIKMFDRIMKMNGISLSNINKLKSYRPKAKHEYFSVTVYAKNKTGLKNLYKLISES 563

Query: 244 AWHPRYKD 251
             +    +
Sbjct: 564 RMNHFNNE 571


>gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405]
 gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678]
 gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058]
          Length = 1462

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/451 (12%), Positives = 117/451 (25%), Gaps = 42/451 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARN--------FPHTL 412
                               P  L   +   ++  L E  F               P+ L
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAF--LGEELAKKLVITNPNQL 813

Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
              E  + +E  K  L    I++ +  +  L
Sbjct: 814 --AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
           17241]
 gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
           17241]
          Length = 1445

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 56/396 (14%), Positives = 112/396 (28%), Gaps = 40/396 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G   A +R  +   V++ R  E ++    F      +    P+   +TGIT 
Sbjct: 427 IVFDLETTGLSAATERITEIGAVKL-RNGEIVDRFNTF---VNPERSIPPKITELTGITD 482

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  + E E  R+ + F    ++ ++  +N  FD  + R    R   +         
Sbjct: 483 DDVRGAPL-EGEALRQFYAFCG-GSSAVLIAHNAPFDTSFLRQCARRCGMEYN------- 533

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +  +D +    +  P+  +           KL  +A   G+   N H A  D     
Sbjct: 534 ---FTAIDTVVLSRSLFPELKK----------HKLDIVAKHLGLGEFNHHRACDDAEMLA 580

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245
            +   + E            +    L  +   ++ T    +         N   +  +  
Sbjct: 581 RIYIRMMELMQSERACSDIGQINTSLAAVDVKKSPTYHQIILVKNLTGLKNLYRLISI-S 639

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKCPILM 304
           H  Y         S  +   + L      +        ++G                 + 
Sbjct: 640 HLDYYAKRPRIPKSKLIEHREGLLIGSACEAGQLYRAIVEGKSWGDLCDIARFYDYLEIQ 699

Query: 305 PIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           P+   +         D +   E N T++R    L     A  +  +          +   
Sbjct: 700 PVANNEYMVRSNMVADEQAIREFNETVVRLGERLNIPVVATCDVHFMDPGDAKFRAILMA 759

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
                             +Q + L    +D  L E 
Sbjct: 760 GMGF-----------ADADQQAPLYFRTTDEMLKEF 784


>gi|154505436|ref|ZP_02042174.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
 gi|153794279|gb|EDN76699.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
          Length = 219

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 26/193 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + ++D ET G    +D   + + V+V +     ++                +A  + GIT
Sbjct: 15  YTVFDLETTGISANMDDIIEISAVKV-KGGIVQDTFSTL---VNPGRHIPAQATKVNGIT 70

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q      ++  E      +F       ++G+N   FD  +        F ++       
Sbjct: 71  DQMVSEAPLI-REAMTEFLRFVGED--ILVGHNIQSFDMKFIYREVEELFQETVSN---- 123

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +D +       P+              +L DLA   GI    AH A  D    
Sbjct: 124 -----DFIDTLYMARKCLPELKH----------HRLTDLAEHFGISSKGAHRALNDCVMN 168

Query: 185 LALVWLIREKKPK 197
                 + + + K
Sbjct: 169 QKCFEEMAKLQKK 181


>gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 605

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 62/201 (30%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   A     +   V+V R  E++                 P    +TGI
Sbjct: 43  TFVVVDLETTGGSPADSAITEVGAVKV-RGGERLGEFATL---VDPGVPIPPFITALTGI 98

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T Q            S  +  F      C++  +N  FD  + R     + +        
Sbjct: 99  TQQMVTNAPP----MSAVLPAFLEFARGCVLVAHNAPFDIGFLRAACTAHDHPWPA---- 150

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D  D+ R +              +   + KL  LA          H A AD  A
Sbjct: 151 --FPVVDTADLARRV-----------LTREEVPNCKLATLARYFRTGTEPCHRALADARA 197

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+      +  +
Sbjct: 198 TVDVLHGLIERLGSYGVHSLE 218


>gi|304406903|ref|ZP_07388557.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           curdlanolyticus YK9]
 gi|304343890|gb|EFM09730.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           curdlanolyticus YK9]
          Length = 957

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 68/201 (33%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G   A D   Q   V +D +    ++   F           P    +TGI
Sbjct: 2   KFAVLDLETTG-HQAEDEMIQIGIVMLDEELNVTDTFSSF---VRPATDIPPFITQLTGI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       VE +    + +        ++  +N+ FD ++      R  Y  +     
Sbjct: 58  TNEMVADAPSVE-DVLTDVVKLL---GDAVLVAHNVGFDAHFMNRALDRCGYSPF----- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R D +D++R +Y                 S++L  ++ A GI H   H A +D  A
Sbjct: 109 -TGRRLDTIDLLRMLY-------------PTLPSYQLGAVSEAFGITHERKHQADSDAEA 154

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L      K   L      
Sbjct: 155 TAMLFAHCVHKLRDLPLLSLQ 175


>gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. D5]
 gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. D5]
          Length = 1498

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 49/404 (12%), Positives = 113/404 (27%), Gaps = 48/404 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + ++++D ET G     D+  +   V+V    E ++    F            +   +T 
Sbjct: 459 DTYIVFDLETTGFSAIKDKIIEIGAVKV-VNGEIVDRFSTF---VNPKRPIPFQITQLTS 514

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  +    +E      + QF       ++  +N  FD  +                +
Sbjct: 515 ITDEMVMGYPDIE----TILPQFLEFAKDGVLVAHNAGFDVGFIEQNCR----------Y 560

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +    +  +D +       P   +          +KL  +A A GI   N H A  D  
Sbjct: 561 QDIEPHFVYVDTVAMARVLLPTLSK----------YKLNVVAKALGISLENHHRAVDDAA 610

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     +   +         N+        I+ + P  H+  +         L   
Sbjct: 611 ATSEIFVKFVQMLKEQNITTLKEMNRFGDMNPNAIRKL-PTYHIIILIKNDIGRYNLYQL 669

Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDL------DSVQLAKRLFTSHDELKGLVPVPIKEV 295
           +   H  Y         S      + L      ++ +L + +  +    + +  +     
Sbjct: 670 ITQSHLTYYARRPRIPKSVLNEYREGLIVGSACEAGELYQAILNNKS-AESIARLADFYD 728

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           +    P+         + +            N  ++      +       +  +     +
Sbjct: 729 YYEIQPLGNNRFMMVSDKYPDINTKEDLEEINRKIVELGEKFKKPVVGTCDVHFLDPEDE 788

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           V  ++                  +  ++   L L  ++  L E 
Sbjct: 789 VYRRIIMAGKGF-----------SDADEQPPLYLRTTEEMLEEF 821


>gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
          Length = 1463

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    +++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFVDKAEETVAEL 843


>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
 gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
          Length = 1433

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 139/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F S      +  +N  FD  +    F +   D      
Sbjct: 472 ITDDMLTDAP----EVGEVFKKFESWMGDHTLVAHNASFDMGFLNVGFKKCGLD------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KPKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     +    ++  L    F          +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VYFRTTNEMLDCFSF--LGEEKAKEIVVTNTQKV 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
          Length = 1463

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVSRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGRPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AEIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
 gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
          Length = 1464

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/451 (12%), Positives = 124/451 (27%), Gaps = 44/451 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-YKGNIVEQFDEF---INPGHHLSAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E +  +    F       ++  +N  FD  +    + R+          
Sbjct: 481 TDNHVRNAKPIE-QVLQMFQDF---CKDTVLVAHNATFDVGFMNANYKRHGMP------T 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                    L  L     +   + H A  D  A
Sbjct: 531 ITQPVIDTLELARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++  +      + D   K           +             ++   L++
Sbjct: 578 TGRLLFIFLKEARENHGLTNMMDLNTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     +      + L               L   V   ++        
Sbjct: 638 --LSNVKYFEGVARIPRTVLDAHREGLLLGTACSEGEVFDAVLTSGVDKAVEVAKYYDFI 695

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQD 355
            +MP         +    D +   + +  L        +  L                + 
Sbjct: 696 EVMPPAIYAPLLAQGTIKDEEGIRQVIRDLIEVGRRLNKPVLATGNVHYIEPEDEIYREI 755

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNF--PHT 411
           +   L  G   +      +         L   +   ++  L E  F     A      +T
Sbjct: 756 IVRSLGQGAPINRPIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGEDVAYEIVVKNT 812

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQS 442
               E+ + +E  KK L    +E+ + ++  
Sbjct: 813 NDFAERFEEIEVVKKDLYTPFLEKSEERVAE 843


>gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK564]
 gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK564]
          Length = 1463

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHGL------SK 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQIGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y +       +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGAPRIPRTVLDAHREGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIENTNAL-- 814

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 815 AETFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115]
          Length = 1462

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 120/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGERLGKLVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF--RYRARN----FPHTLSE 414
                               P  L   +   ++  L E  F  +  A+      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGKDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16]
 gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16]
          Length = 1430

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/479 (14%), Positives = 143/479 (29%), Gaps = 50/479 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +   +V++D ET G     +   + A V++ +  E I++ E F              + +
Sbjct: 412 LEEEYVVFDVETTGLSAVYNTIIELAAVKI-KNGEIIDTYESFA---DPKEPLSATIIEL 467

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT           AE  ++  +F        +  +N  FD  +    + +  +     
Sbjct: 468 TGITDDMVQGAPEP-AEVLKQFREF---AGNATLVAHNASFDIGFLNVGYKKLGFSEV-- 521

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D L++ R +Y                 + +L  L     IE V+ H A  D
Sbjct: 522 ----TNPVIDTLELGRFLY-------------PELKNHRLNTLCKKFDIELVSHHRAIYD 564

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  L+W + +   +     +D  N +  +     Q       +       ++   L+
Sbjct: 565 TQATAYLLWKMVKDAAEKEIVYHDELNNHMGQGNFHRQRPFHCTLLVTSQTGLKNLYQLV 624

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    H  Y         S   +  + L       +       ++       K       
Sbjct: 625 SM--SHVDYYFRTPRIPRSQLNKHREGLLIGSACDKGEVFEGMMQKSADEVEKIAGFYDF 682

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + P+             D     E +  ++     L     A  N  Y +    +  +
Sbjct: 683 LEIQPLGNYGHLIERELVKDKTALQEIVGNIVALGERLGLPVVATGNVHYLNEEDAIYRK 742

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH----TLSEK 415
           +        +            ++L  ++   +   L E  F             T S  
Sbjct: 743 ILIASQGGAN--------PLNKQKLPDVHFRTTTEMLEEFSF--LGAEQAEKVVVTASND 792

Query: 416 EKQDWLEH--RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                 +       L   +IE   ++++++S E      GD   E +   L + L+ +I
Sbjct: 793 IAAQVGDVHPIPDDLYAPKIEGADDEIRNMSYERAKMIYGDPLPEIVEARLQKELKSII 851


>gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
 gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
          Length = 1462

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/452 (12%), Positives = 117/452 (25%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +    +    D +     +  L +      +  L                + + 
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGNRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411
             L  G   +      +      P  L   +   ++  L E  F      +      P+ 
Sbjct: 756 RSLGQGAMINRTIGHGE---NAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQ 812

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           L   E  + +E  K  L    IE+ +  +  L
Sbjct: 813 L--AETFEPVEVVKGDLYTPFIEKAEETVAEL 842


>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1434

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/475 (14%), Positives = 138/475 (29%), Gaps = 51/475 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G + +     + A V++ +  E I+                P+   ITGIT
Sbjct: 421 YVVFDTETTGLNASEHTIIEIAAVKM-KGAEIIDQWTEL---IDPQLQIGPKTTEITGIT 476

Query: 65  PQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            +          E    + + F       I+  +N  FD  +      R   + +   + 
Sbjct: 477 NEMLRGQ-----ETLDVVLRKFKDFTGDAILVAHNAEFDKAFINACAKRIGMEPWTNPF- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R +Y              G  +++L  LA    +E +NAH A  D  A
Sbjct: 531 -----LDTLPLARLMY-------------KGMRNYRLGSLAKKFNVELINAHRALDDTVA 572

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              +   + +   +         N+    +  D ++  P      +              
Sbjct: 573 LAHVFQQMLKDIKEAEIKSLAELNEKSNEE-ADYKSGRPFHATILVQNKEGLKNLYKLVS 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKCPI 302
             H            S   +  + L      K        L+G  P  +KEV        
Sbjct: 632 RSHVETFFRWPRIQRSQLSKYREGLLIGTACKDGELMQSILRGKSPEELKEVAAFYDFIE 691

Query: 303 LMPIDYCKKEHFERWGIDHKRCL-ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + PI +             +     +  +++    L     A  +  + +   ++   ++
Sbjct: 692 VQPISHYSPLLRNEEIPSLETMKGYHEKIVQMGKELGKLVVATGDVHFLNPQDEIFRDVF 751

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQD 419
                D                   L    +D  L    F     A+    T +      
Sbjct: 752 LLSKGDPTAG-----------NQPPLYFHTTDEMLEAFSFLGEEIAKEIVVTNTNAIADM 800

Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
             +       L    IE   ++L+ +    +    GD   E + + L + L  +I
Sbjct: 801 IEDISPIPDKLYTPIIEGADDELRQMCYDKARLLYGDPLPELVEHRLEKELNSII 855


>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
 gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
          Length = 1449

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/480 (13%), Positives = 139/480 (28%), Gaps = 55/480 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D+  +   V++ +  E ++S   F            +   +T 
Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKL-KDGEIVDSFSTF---VDPKVNIPYKITELTS 488

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++ E   +  +F       ++  +N  FD  + +               
Sbjct: 489 ITQNMVNGQPTID-EVLPKFMEFV---GDSVLVAHNAAFDVGFIKKNLMDMGK------- 537

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D + + R +Y                   KL  +A   GI   N H A  D  
Sbjct: 538 TLKNPVMDTVPLARYLY-------------PDLKKVKLNLVAKHLGISLENHHRAVDDAK 584

Query: 183 ATLALVWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  ++    +K  +  +       N+  L  +   +     + +         N   + 
Sbjct: 585 ATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLV 644

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKC 300
            +A H  Y         S      + L      +        L+G     +KE+      
Sbjct: 645 SMA-HLDYFARRPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDY 703

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + PI   +    +    D +   E N  +      +     A  +  +   + +V  +
Sbjct: 704 LEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRR 763

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +                     +    L    ++  + E  F Y        +  +  Q 
Sbjct: 764 IIMAGQGYG-----------DADNQPPLYFRTTNEMMKE--FEYLGEEACREVVIENTQK 810

Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
             +               +IE  + ++++++        G+   E +   L + L  +I 
Sbjct: 811 IADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 870


>gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
 gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
          Length = 1513

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/399 (14%), Positives = 102/399 (25%), Gaps = 38/399 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D+  +   V+V    E  +    F            +   +T 
Sbjct: 468 DTYVVFDLETTGFSPIKDKIIEIGAVKV-EHGEITDKFSTF---VNPKVPIPFQITQLTS 523

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT Q  +    +E      + QF        +  +N  FD  +                +
Sbjct: 524 ITDQMVIGAPDIE----TVLPQFLEFIGDAALVAHNASFDVSFIEQNCR----------Y 569

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +    +  +D +       P   +          +KL  +A A  I   N H A  D  
Sbjct: 570 QDIQPDFTSVDTVAMARILLPTLSK----------YKLNVVANALHISLENHHRAVDDAG 619

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     E       Y     N+       D     P  HV  +         L   
Sbjct: 620 ATAEIFVKFVEMLKDRGIYDLAKLNQFG-ENNADAVRKLPSYHVIILALNEVGRVNLYTL 678

Query: 243 V-AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300
           +   H +Y         S   +  + L      +        L       I K  +    
Sbjct: 679 ISMSHLKYYARRPRIPKSELSKYREGLLVGSACEAGELYQAILNDKSEERIAKIANFYDY 738

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             + P+    +   E   I   +  E+L  + ++                          
Sbjct: 739 LEIQPLGNN-QFMIESPKITKVQNEEDLKEINRKIVALGERFNKPVVGTCDVHFMNPEDE 797

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
                    +           +    L L  +D  L E 
Sbjct: 798 VYRRIIMAGKGFG------DADNQPPLYLRTTDEMLEEF 830


>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
 gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
          Length = 1433

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/477 (14%), Positives = 139/477 (29%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V++ +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKI-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +          
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGL------A 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTNNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +    ++ L +     D+        +    +D    +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDQEDA---MY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   +D  L    F     +    +     Q   
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDKAKEIVVTNTQKVA 797

Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
 gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
          Length = 1462

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------Q 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGERLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      +      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150]
          Length = 1462

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      +      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353]
          Length = 1462

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      +      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1443

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/486 (12%), Positives = 129/486 (26%), Gaps = 70/486 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            ++++D ET G     D   + A V++ +  + I++ E F            + + +T I
Sbjct: 428 TYIVFDVETTGFSNVYDTIIELAAVKI-KNGQVIDTFERFS---NPHRKLTAKIIELTHI 483

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +      ++  R  H F       ++  +N  FD  +    +     +       
Sbjct: 484 TDDMLVNAPE-LSDVIREFHDFIGDG---VVVAHNAAFDLGFLYVAYKNAGIE------- 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R   +D +                + G  S  L+ L     IE    H A  D  A
Sbjct: 533 ---VRHPGIDTVELSRLV----------NPGQKSHNLKTLTKKYNIELTQHHRAIYDTEA 579

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L   + ++   L        N + +      +   P          +          
Sbjct: 580 TGELFLHLLKQAADLGIKNLIEMN-DHVGGEEGYKQSRPSHCTVLAVDDAGLKNLFKLIS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H      V     S   ++ Q L               +        +         +
Sbjct: 639 ISHTETFYRVPRIRRSDLQKLRQGLIVGSGCSNGELFETMMNKTQEEAERIAKFYDYLEV 698

Query: 304 MPIDYCKKEHF---ERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
           MP                   +  +    +++    L     A  N  Y   +     Q+
Sbjct: 699 MPKPVYSPLVDGGTVHDEWALEDIIRR--IVKLGKKLNLPVVATGNVHYLHETDAKFRQI 756

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
             G     +    +         L  ++   +D  L E             L     ++ 
Sbjct: 757 LVGSMGGANPLNRNP--------LPKVHFRTTDEMLKEF----------DFLGPDLAKEI 798

Query: 421 --------------LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYE 462
                         ++  K  L   +IE   +++ +L+ E       E L       + +
Sbjct: 799 VVTNTQRVADMIGHVKPIKDDLYTPKIEGSDDEVTNLTYEMAHSIYGENLPEIVQARIDK 858

Query: 463 YLQWVI 468
            L+ ++
Sbjct: 859 ELKSIL 864


>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1438

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/474 (11%), Positives = 127/474 (26%), Gaps = 46/474 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G  +  ++  + A V++  + ++I     F                +T I
Sbjct: 420 TYVVFDIETTGLSITANKIIELAAVKM-HEGKEIGRYATF---VNPHERIPYHIQQLTNI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        E    + +F       ++  +N RFD  + +        D+    + 
Sbjct: 476 NDDMVKDAP----ELEPVLKEFVEFVGDGVLVAHNARFDMGFIQAALKNAGMDTLENPY- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R ++              G  + +L  LA    +   + H A  D  A
Sbjct: 531 -----LDTLELARLVH-------------PGLKNHRLNTLADKYKVLLESHHRAIDDTIA 572

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              ++  +     K        R  + +   +           +      ++   L++  
Sbjct: 573 LAGILNGLLSDVDKTKGVKMLDRLNDYVGMDLSNTRPFHCGIYALNMTGKKNLYKLVSM- 631

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y   V     S    +   L  +   ++       L        +         +
Sbjct: 632 -SHTEYFKRVPCIPKSKLQEMRDGLLVLSGCEKGEFFETVLNKTEEEAEEIAGFYDVLEI 690

Query: 304 MPIDYCKKEHFERWGIDHKRCL-ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P+        +      +        ++R    L     A  N  Y      +   +  
Sbjct: 691 QPLTMYMHLVDKGLVGSPEEIKTAISKVVRIGEKLNKPVIATGNVHYLEPRDKLFRDITI 750

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQDW 420
                               +    +   ++  L E  F    +      T + +    +
Sbjct: 751 HGITG--------FSPLKDMRKPDAHFRTTEEMLQEFEFLGQDKCYEVVVTNTSELADRF 802

Query: 421 L--EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVI 468
              E     L    +E    ++++   +       E L       L + L+ +I
Sbjct: 803 EDLELFPDKLFTPILEGADEEIRNTCYDTAKSIYGENLPEVVVARLEKELEPII 856


>gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
 gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
          Length = 1464

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 104/401 (25%), Gaps = 30/401 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 425 TYVVFDVETTGLSAVNNDLIQIAASKM-YKGNIVEQFDEF---INPGHHLSAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E E  +    F       ++  +N  FD  +    + R+          
Sbjct: 481 TDNHVRNAKPIE-EVLQMFQNF---CQDTVLVAHNATFDVGFMNANYERHGMPII----- 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +            +L      +          +   +          
Sbjct: 578 TGRLLFIFLKEARENHSLANMMDLNTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   V   +K         +
Sbjct: 638 LSNVKYFEGVARIPRTVLDAHREGLLLGTACSEGEVFDAVLSSGVDAAVKVAKYYDFIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +   + +  L +    L     A  N  Y     ++  ++  
Sbjct: 698 MPPVLYAPLLAQGTIKDEEGIRQVIRDLLEVGRRLNKPVLATGNVHYIEPEDEIYREIIV 757

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
                               P  L   +   ++  L E  F
Sbjct: 758 RSLGQGAPINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAF 798


>gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
 gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus ATCC 10987]
          Length = 970

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/477 (14%), Positives = 138/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  +++E   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKEVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +     T++     L +               D +  +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAMY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   +D  L    F     +    +     Q   
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKIA 797

Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
 gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
 gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens ATCC 13124]
 gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
          Length = 1449

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/480 (13%), Positives = 139/480 (28%), Gaps = 55/480 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D+  +   V++ +  E ++S   F            +   +T 
Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKL-KDGEIVDSFSTF---VDPKVNIPYKITELTS 488

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++ E   +  +F       ++  +N  FD  + +               
Sbjct: 489 ITQNMVNGQPTID-EVLPKFMEFV---GDSVLVAHNAAFDVGFIKKNLMDMGK------- 537

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D + + R +Y                   KL  +A   GI   N H A  D  
Sbjct: 538 TLKNPVMDTVPLARYLY-------------PDLKKVKLNLVAKHLGISLENHHRAVDDAK 584

Query: 183 ATLALVWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  ++    +K  +  +       N+  L  +   +     + +         N   + 
Sbjct: 585 ATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLV 644

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKC 300
            +A H  Y         S      + L      +        L+G     +KE+      
Sbjct: 645 SMA-HLDYFARRPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDY 703

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + PI   +    +    D +   E N  +      +     A  +  +   + +V  +
Sbjct: 704 LEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRR 763

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +                     +    L    ++  + E  F Y        +  +  Q 
Sbjct: 764 IIMAGQGYG-----------DADNQPPLYFRTTNEMMKE--FEYLGEEACREVVIENTQK 810

Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
             +               +IE  + ++++++        G+   E +   L + L  +I 
Sbjct: 811 IADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 870


>gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585]
 gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 70585]
          Length = 1463

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/448 (12%), Positives = 117/448 (26%), Gaps = 38/448 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     +   Q A  ++  +   I   + F       +        +TGIT
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGIT 480

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +  +   +F       ++  +N  FD  +    + R+           
Sbjct: 481 DDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------KI 530

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+  R +Y                    L  L    G+   + H A  D  AT
Sbjct: 531 SQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEAT 577

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L+++  ++  +        R    L      +          +               
Sbjct: 578 GRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSL 637

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            + +Y + V     +      + L               +   V   ++         +M
Sbjct: 638 SNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEVM 697

Query: 305 PIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           P         +    D +     +  L+     L     A  N  Y    +++  ++   
Sbjct: 698 PPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVR 757

Query: 364 FFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSEK 415
                              P  L   +   ++  L E  F      R       + L   
Sbjct: 758 SLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL--A 815

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           E  + +E  K  L    I++ +  +  L
Sbjct: 816 EIFEPVEVVKGDLYTPFIDKAEETVAEL 843


>gi|226490309|emb|CAQ42997.1| exonuclease [Escherichia coli K-12]
          Length = 89

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 57/83 (68%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             F+ +DYETFG   ALDRPAQFA +R D ++  I   EVF+CKPADDYLP P AV IT
Sbjct: 7  QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66

Query: 62 GITPQKALRDGVVEAEFSRRIHQ 84
          GITPQ+A   G  EA F+ RIH 
Sbjct: 67 GITPQEARAKGENEAAFAARIHS 89


>gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
          Length = 970

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/477 (14%), Positives = 138/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +     T++     L +               D +  +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAMY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   +D  L    F     +    +     Q   
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKIA 797

Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 798 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 854


>gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
          Length = 972

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/477 (14%), Positives = 138/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 473

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 474 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLE------ 523

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  L     IE    H A  D  
Sbjct: 524 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTLCKKMDIELTQHHRAIYDTE 570

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 571 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 630

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 631 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 688

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +     T++     L +               D +  +Y
Sbjct: 689 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAMY 745

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   +D  L    F     +    +     Q   
Sbjct: 746 RKILVSSQGGANPLNRHSLPP----VHFRTTDEMLECFSF--LGEDVAKEIVVTNTQKIA 799

Query: 422 EHR------KKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ + +S +      G+E  E +   L + L+ +I
Sbjct: 800 SLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGEELPEIVEARLEKELKSII 856


>gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36]
 gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis
           SK36]
          Length = 1462

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLPKII---- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 531 --QPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      +      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|284048335|ref|YP_003398674.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM
           20731]
 gi|283952556|gb|ADB47359.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM
           20731]
          Length = 223

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 26/209 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVF 59
            + +V+ D ET G D   D+  +   + V    ++  +         P +     P    
Sbjct: 22  PDTYVVVDLETTGLDPERDQIIEIGALEVTA-GKRGRTFSTLLQPRTPLEGQYVSPFITR 80

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT +          +      +F     + +    N+ FD  + +  F    Y    
Sbjct: 81  LTGITNEMLAAAPQP-RQALEAFGKFL---GSRVAVGYNVGFDMGFLQQQFQDQLYRPLA 136

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             W       D+L + + ++                   +L +LA    +E+  AH A +
Sbjct: 137 NDW------VDVLPMAQTLFPLWDH-------------HRLNNLAAWYHVENKEAHRALS 177

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK 208
           DV  T      ++E   + +  L D+  K
Sbjct: 178 DVETTETCFRKLKEDAGRQYPSLEDFLEK 206


>gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630]
 gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42]
 gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255]
 gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile]
          Length = 1432

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/399 (13%), Positives = 120/399 (30%), Gaps = 39/399 (9%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++  FV++D ET G     D+  +   V++   ++ ++           +     +   +
Sbjct: 414 LSQTFVVFDIETTGFSNTNDKITEIGAVKI-ENFKIVDRFSEL---INPEKDISYKIQEL 469

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       +E E   +  +F       ++  +N  FD  +               
Sbjct: 470 TGITNELIKDKPTIE-EVLPKFMEFV---GDSVLVAHNAEFDTGFISQKCREQGL----- 520

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N + D L + R +                    +L  +A   GI  +N H A  D
Sbjct: 521 --LYNNKKVDTLMLARVM-------------LPNLKRHRLNVVAKELGIPLLNHHRAVDD 565

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +     +   +         N    +      +   +  ++      ++   +I
Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDVNNILGKIDYTKLSTNHITLIAKNSIGIKNLYKII 625

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    +  ++   I  ++  + +    + S   A  +F +  +      +  K + L   
Sbjct: 626 SDAHVNHFFRAPRILRSVLNEYKEGLIIGSACEAGVVFQAVKKNVSDEEMK-KIIDLYDY 684

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             +MPID  +    +    D +   E    L       D+        +     +   + 
Sbjct: 685 IEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDTAKKFDKIPVATGDVHFLDKHEAVLRK 744

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
              +                 E+ + L+   +D  L E 
Sbjct: 745 VLKYSQGFKVD----------EEETYLHFRTTDEMLEEF 773


>gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101]
 gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens SM101]
          Length = 1449

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/480 (13%), Positives = 139/480 (28%), Gaps = 55/480 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D+  +   V++ +  E ++S   F            +   +T 
Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKL-KDGEIVDSFSTF---VDPKVNIPYKITELTS 488

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++ E   +  +F       ++  +N  FD  + +               
Sbjct: 489 ITQNMVNGQPTID-EVLPKFMEFV---GNSVLVAHNAAFDVGFIKKNLMDMGK------- 537

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D + + R +Y                   KL  +A   GI   N H A  D  
Sbjct: 538 TLKNPVMDTVPLARYLY-------------PDLKKVKLNLVAKHLGISLENHHRAVDDAK 584

Query: 183 ATLALVWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  ++    +K  +  +       N+  L  +   +     + +         N   + 
Sbjct: 585 ATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLV 644

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKC 300
            +A H  Y         S      + L      +        L+G     +KE+      
Sbjct: 645 SMA-HLDYFARRPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDY 703

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + PI   +    +    D +   E N  +      +     A  +  +   + +V  +
Sbjct: 704 LEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRR 763

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +                     +    L    ++  + E  F Y        +  +  Q 
Sbjct: 764 IIMAGQGYG-----------DADNQPPLYFRTTNEMMKE--FEYLGEEACREVVIENTQK 810

Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
             +               +IE  + ++++++        G+   E +   L + L  +I 
Sbjct: 811 IADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 870


>gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087]
          Length = 1462

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKALNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIDPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      +      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
 gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
          Length = 1449

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/480 (13%), Positives = 138/480 (28%), Gaps = 55/480 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D+  +   V++ +  E ++S   F            +   +T 
Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKL-KDGEIVDSFSTF---VDPKVNIPYKITELTS 488

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++ E   +  +F       ++  +N  FD  + +               
Sbjct: 489 ITQNMVNGQPTID-EVLPKFMEFV---GDSVLVAHNAAFDVGFIKKNLMDMGK------- 537

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D + + R +Y                   KL  +A   GI   N H A  D  
Sbjct: 538 TLKNPVMDTVPLARYLY-------------PDLKKVKLNLVAKHLGISLENHHRAVDDAK 584

Query: 183 ATLALVWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  ++    +K  +  +       N+  L  +   +     + +         N   + 
Sbjct: 585 ATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLV 644

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKC 300
            +A H  Y         S      + L      +        L+G     +KE+      
Sbjct: 645 SMA-HLDYFARRPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDY 703

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + PI   +    +    D     E N  +      +     A  +  +   + +V  +
Sbjct: 704 LEIQPIQNNEFLIRKGNVKDEDELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRR 763

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +                     +    L    ++  + E  F Y        +  +  Q 
Sbjct: 764 IIMAGQGYG-----------DADNQPPLYFRTTNEMMKE--FEYLGEEACREVVIENTQK 810

Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
             +               +IE  + ++++++        G+   E +   L + L  +I 
Sbjct: 811 IADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 870


>gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13]
 gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens CPE str. F4969]
 gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13]
 gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens CPE str. F4969]
          Length = 1449

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/480 (13%), Positives = 139/480 (28%), Gaps = 55/480 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D+  +   V++ +  E ++S   F            +   +T 
Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKL-KDGEIVDSFSTF---VDPKVNIPYKITELTS 488

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++ E   +  +F       ++  +N  FD  + +               
Sbjct: 489 ITQNMVNGQPTID-EVLPKFMEFV---GNSVLVAHNAAFDVGFIKKNLMDMGK------- 537

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D + + R +Y                   KL  +A   GI   N H A  D  
Sbjct: 538 TLKNPVMDTVPLARYLY-------------PDLKKVKLNLVAKHLGISLENHHRAVDDAK 584

Query: 183 ATLALVWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  ++    +K  +  +       N+  L  +   +     + +         N   + 
Sbjct: 585 ATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLV 644

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKC 300
            +A H  Y         S      + L      +        L+G     +KE+      
Sbjct: 645 SMA-HLDYFARRPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDY 703

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + PI   +    +    D +   E N  +      +     A  +  +   + +V  +
Sbjct: 704 LEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRR 763

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +                     +    L    ++  + E  F Y        +  +  Q 
Sbjct: 764 IIMAGQGYG-----------DADNQPPLYFRTTNEMMKE--FEYLGEEACREVVIENTQK 810

Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
             +               +IE  + ++++++        G+   E +   L + L  +I 
Sbjct: 811 IADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 870


>gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 1398

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/478 (14%), Positives = 137/478 (28%), Gaps = 54/478 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            ++++D ET G     D   +   ++V    E +E           +     +   +TGI
Sbjct: 381 KYIVFDLETTGFSNRNDAITEIGAIKV-ENGEIVEEFSQL---INPERPIPEKIQKLTGI 436

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  +    + +E   +   F       I+  +N  FD  + R     N          
Sbjct: 437 TNEMVIDKPTI-SEVLPKFLDF---CKDSILVAHNSDFDTGFVREKASENNLPY------ 486

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +D +D +       PD            + KL  +A    +   N H A  D  A
Sbjct: 487 ----DFDAIDTVILSRLLMPDL----------KNHKLNTIAKELNVSLENHHRAVDDATA 532

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +      K   +    ++  N+    K ID   + P+  V      +          
Sbjct: 533 TAQIFLNFISKLKAMEIENFNEINEK--IKSIDTSKIRPVNAVILAKNQAGVKDLYKLVS 590

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H +Y         SG   + +          L  S      +    +K   + +   +
Sbjct: 591 LAHTKYLY-------SGTPTIPKSEIKNHRENLLVGSGFYESDVFSAILKNKPVKEIESI 643

Query: 304 MPIDYC--KKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           +                + +   + N+  ++       +      K    +S +      
Sbjct: 644 IDFYDYIEINPVTTMNSMINDESVRNVEEIKNINKTIYQIATKMGKT-VIASSNSHYLDE 702

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
           D        +   +    +P+    L L  +D  L E    Y   +    +  +      
Sbjct: 703 DEKLFRKILKSSIKKRDESPDN--DLYLRTTDEMLQEFS--YLGEDVARKIVVENTNAIA 758

Query: 422 EHRKKML------TRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
              +K++          IE    +L+++    +     D   E +   L + L  +I 
Sbjct: 759 NTIEKVIPVPDGTFPPVIEGSDEELRNMCYEKAKRIYSDNLPEIVEKRLEKELNSIIN 816


>gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63]
          Length = 1432

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 123/400 (30%), Gaps = 41/400 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++  FV++D ET G     D+  +   V++   ++ ++           +     +   +
Sbjct: 414 LSQTFVVFDIETTGFSNTNDKITEIGAVKI-ENFKIVDRFSEL---INPEKDISYKIQEL 469

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       +E E   +  +F       ++  +N  FD  +               
Sbjct: 470 TGITNELIKDKPTIE-EVLPKFMEFV---GDSVLVAHNAEFDTGFISQKCREQGL----- 520

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N + D L + R +                    +L  +A   GI  +N H A  D
Sbjct: 521 --LYNNKKVDTLMLARVM-------------LPNLKRHRLNVVAKELGIPLLNHHRAVDD 565

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +     +   +         N    +      +   +  ++      ++   +I
Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDVNNILGKIDYTKLSTNHITLIAKNSVGIKNLYKII 625

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    +  ++   I  ++  + +    + S   A  +F +  +      +  K + L   
Sbjct: 626 SDAHVNHFFRAPRILRSVLNEYKEGLIIGSACEAGVVFQAVKKNVSDEEMK-KIIDLYDY 684

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             +MPID  +    +    D +   E N  L+           A  +  +    + +  +
Sbjct: 685 IEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDTAKKFNKIPVATGDVHFLDKHEAILRK 744

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           +                     E+ + L+   +D  L E 
Sbjct: 745 VLKYSQGFKVD-----------EEETYLHFRTTDEMLEEF 773


>gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
 gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
          Length = 1490

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/483 (13%), Positives = 143/483 (29%), Gaps = 67/483 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G     D+  +   V++      ++    F           P    +T IT 
Sbjct: 460 VVFDIETTGLSPTEDKIIEIGAVKM-LDGVVVDKFSEF---VDPKIPISPATTKLTTITD 515

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
              +   +++A     + +F      C++  +N+ FD  +      R             
Sbjct: 516 DMVIGAPLIDA----VVPKFVEFCGDCVLVGHNVGFDISFIIENCRRLGIK--------- 562

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +  +D M    AF P   +            L+ +     + +   H A +D   T 
Sbjct: 563 -KEFTCIDTMGLSRAFYPQQAK----------HSLEAVCKTLKVVNEQHHRAISDAECTA 611

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA- 244
            +  +    + KL+E      +  +  + +DI+ +  L     +  A  +          
Sbjct: 612 EIFKIF---QEKLYEKGIYDLDAIKAIEELDIEAVKRLHSNHVILIAKDTCGRTNLYTLI 668

Query: 245 --WHPRYKDSVIGCNLSGDMRVFQDL------DSVQLAKRLFTSHDELKGLVPVPIKEVH 296
              H  Y         S  ++  + L         +L + +     + +    V   + +
Sbjct: 669 SKSHIDYYYRKPIIPKSELIKYREGLIVGSACCLGELYEAVREGRSDEEIAKIVDFYD-Y 727

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
           L   PI         E  E+   +      N  +++   +      A  +  + +   ++
Sbjct: 728 LEIQPIANNKFMIANEKMEKINSEEDLRDINRKIVKLGEHYNKPVVATCDVHFLNPEDEI 787

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
              +               + +   E  + L L  ++  L E  F Y        +  + 
Sbjct: 788 YRTIILS------------MKKMDKEDPAPLYLRTTEEMLQE--FEYLGEEKAREVVIEN 833

Query: 417 KQDWLEHRKKMLTRSRIEE---YKNKLQSLS--------GEYKGDEGKEGLINALYEYLQ 465
                +   + ++  R ++          L          E  GD     +   L + L+
Sbjct: 834 SNKIFDWC-EKISPVRPDKCPPVIENSDELLRKICYDKMHEMYGDPLPPIVEERLEKELK 892

Query: 466 WVI 468
            +I
Sbjct: 893 SII 895


>gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07]
 gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07]
          Length = 1432

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 123/400 (30%), Gaps = 41/400 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++  FV++D ET G     D+  +   V++   ++ ++           +     +   +
Sbjct: 414 LSQTFVVFDIETTGFSNTNDKITEIGAVKI-ENFKIVDRFSEL---INPEKDISYKIQEL 469

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       +E E   +  +F       ++  +N  FD  +               
Sbjct: 470 TGITNELIKDKPTIE-EVLPKFMEFV---GDSVLVAHNAEFDTGFISQKCREQGL----- 520

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N + D L + R +                    +L  +A   GI  +N H A  D
Sbjct: 521 --LYNNKKVDTLMLARVM-------------LPNLKRHRLNVVAKELGIPLLNHHRAVDD 565

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +     +   +         N    +      +   +  ++      ++   +I
Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDVNNILGKIDYTKLSTNHITLIAKNSVGIKNLYKII 625

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    +  ++   I  ++  + +    + S   A  +F +  +      +  K + L   
Sbjct: 626 SDAHVNHFFRAPRILRSVLNEYKEGLIIGSACEAGVVFQAVKKNVSDEEMK-KIIDLYDY 684

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             +MPID  +    +    D +   E N  L+           A  +  +    + +  +
Sbjct: 685 IEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDTAKKFNKIPVATGDVHFLDKHEAILRK 744

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           +                     E+ + L+   +D  L E 
Sbjct: 745 VLKYSQGFKVD-----------EEETYLHFRTTDEMLEEF 773


>gi|227432323|ref|ZP_03914316.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351929|gb|EEJ42162.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 1437

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/390 (11%), Positives = 104/390 (26%), Gaps = 31/390 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV +D ET G     DR  + + V++ +    IE    +       +L       +T IT
Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVKM-QLGNVIEKFSEY---INPGFLLSEFTTKLTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E    +R  +        ++  +N+ FD  +    + R            
Sbjct: 475 DAMVANSD-TEENIIKRFRE---WSGNAVLVGHNVTFDVGFMNAAYTRYNQPII------ 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N+  D L   R +Y                 S++L  +A    I    AH A  D   T
Sbjct: 525 TNAIIDTLPFTRWLY-------------PDYKSYRLGTIAKRFNINLEQAHRAIFDAETT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             + W + ++  + +         +++ +    ++  P+     +  A+           
Sbjct: 572 GHIAWRLIKEAQERYNLNRHNELNDRMTEGDAWKHGRPVHATLLVQNATGLKNLYKLVSR 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            +  +   V     S   +  + L               ++  +    K+        + 
Sbjct: 632 SNIEFFARVPRIPRSILEQYREGLLVGTGDTSGDVIISLIEKGIQEAEKKAAYYDFIEIQ 691

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P    +           ++    L  +    +   +   +      ++            
Sbjct: 692 PTANYQPMIESGLIATEEKLQSILKDIVAIGDKLKKPVVVTEDVKYTNP----EDKIYRN 747

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDR 394
                +    +     P+          D 
Sbjct: 748 ILIATQPGNPQNRTALPDLNFKTTQELLDD 777


>gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311]
 gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG
           18311]
          Length = 1464

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/446 (12%), Positives = 117/446 (26%), Gaps = 34/446 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       Y        +TGI
Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIVEQFDEF---IDPGYPLSAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 481 TDNHVKGA-KPLVQVLQEFQEF---CKGAVLVAHNATFDVGFMNANYERHQLP------T 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +   +L      +          +   +          
Sbjct: 578 TGRLLFIFIKDVFEKHGLTNLEQLNTELVSDDSYKKSRVKHATLYVQNQTGLKNIFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V            + +               L   +   ++         +
Sbjct: 638 LSNVSYFEGVARIPRKVLDEYREGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    D +   + +  L +  N  D+        +  + +D   +    
Sbjct: 698 MPPAIYAPLIAKDLIKDEEAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 757

Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418
                   I   I       P  L   +   ++  L E  F  +  A       ++    
Sbjct: 758 RALGQGAMINRPIGKGENAQPAPLPEAHFRTTNEMLDEFAFLGKDLAYEIVVANTQAMAN 817

Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442
                E  KK L    I+  + ++  
Sbjct: 818 QIEEVEVVKKDLYTPYIDRAEEQVAE 843


>gi|332359305|gb|EGJ37126.1| DNA polymerase III PolC [Streptococcus sanguinis SK49]
          Length = 1462

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYESLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      +      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    IE+ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIEKAEETVAEL 842


>gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 560

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 60/190 (31%), Gaps = 24/190 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G + A     +   V+  R  E I   +    +P    +  P    +TGI
Sbjct: 14  TFTVVDLETTGANSAQGDITEIGAVK-SRGGEIIGEFQTL-VRPTRS-VISPFVERLTGI 70

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E +  I  F    +  I+  +N  FD  + +    R  Y    +   
Sbjct: 71  TNSMVATAP----ELASVIPMFLEFAHGSILVAHNAGFDVGFLKEACARLDYPWPGYE-- 124

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++D +R                    + KL  LA    +     H A  D  A
Sbjct: 125 -------VVDTVRLARLC--------VTRQEVRNHKLGTLATFFNVPTPPTHRALDDARA 169

Query: 184 TLALVWLIRE 193
           T  ++  + E
Sbjct: 170 THHILQSMFE 179


>gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J]
 gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J]
          Length = 1465

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/403 (13%), Positives = 110/403 (27%), Gaps = 34/403 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-YKGNIIEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +          + + +F +  +  ++  +N  FD  +    + RN          
Sbjct: 482 TDNHLIGAKP----LLQVLEEFQAFCHDTVLVAHNASFDIGFMNANYERNGLP------Q 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++  +      L D   K           +             ++   L++
Sbjct: 579 TGRLLFIFLKEAREKHGVTDLLDLNIKLVAEDSYKKARIKHATIYVQNQTGLKNIFKLVS 638

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     +   +    L               L   V    +        
Sbjct: 639 --LSNVKYFEGVPRIPRTVLDQYRDGLLLGSACSEGEVFDAVLTKGVEAATEVAKYYDFI 696

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP    +    +    D +   +  L L+     L     A  N  Y     ++  ++
Sbjct: 697 EIMPPAIYQPLIAKELIKDQEGVQQTILDLIEVGRRLNKPVIATGNVHYIEPEDEIYREI 756

Query: 361 YDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
                                 P  L   +   ++  L E  F
Sbjct: 757 IVRSLGQGAMINRPIGRGEAAQPAPLPKAHFRTTNEMLDEFAF 799


>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
 gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
          Length = 1449

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/480 (13%), Positives = 138/480 (28%), Gaps = 55/480 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D+  +   V++ +  E ++S   F            +   +T 
Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKL-KDGEIVDSFSTF---VDPKVNIPYKITELTS 488

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++ E   +  +F       ++  +N  FD  + +               
Sbjct: 489 ITQNMVNGQPTID-EVLPKFMEFV---GDSVLVAHNAAFDVGFIKKNLMDMGK------- 537

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D + + R +Y                   KL  +A   GI   N H A  D  
Sbjct: 538 TLKNPVMDTVPLARYLY-------------PDLKKVKLNLVAKHLGISLENHHRAVDDAK 584

Query: 183 ATLALVWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  ++    +K  +  +       N+  L  +   +     + +         N   + 
Sbjct: 585 ATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLV 644

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNKC 300
            +A H  Y         S      + L      +        L+G     +KE+      
Sbjct: 645 SMA-HLDYFARRPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDY 703

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + PI   +    +    D     E N  +      +     A  +  +   + +V  +
Sbjct: 704 LEIQPIQNNEFLIRKGNVKDEDELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRR 763

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +                     +    L    ++  + E  F Y        +  +  Q 
Sbjct: 764 IIMAGQGYG-----------DADNQPPLYFRTTNEMMKE--FEYLGEEACREVVIENTQK 810

Query: 420 WLEH------RKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
             +               +IE  + ++++++        G+   E +   L + L  +I 
Sbjct: 811 IADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENLPEVVQKRLDKELNSIIN 870


>gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
 gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
          Length = 1462

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/452 (12%), Positives = 117/452 (25%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KSLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +    +    D +     +  L +      +  L                + + 
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHT 411
             L  G   +      +      P  L   +   ++  L E  F      +      P+ 
Sbjct: 756 RSLGQGAMINRTIGHGE---NAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQ 812

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           L   E  + +E  K  L    I++ +  +  L
Sbjct: 813 L--AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1228

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/483 (14%), Positives = 135/483 (27%), Gaps = 56/483 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + +V++D ET G +   DR  +   VRV  + E  E+   F      +     +   +
Sbjct: 198 LMDSYVVFDIETTGFNSVNDRIIEIGAVRV-VEGEIKETFSEF---VNPERPIPYKITQL 253

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT       G +E      + QF       ++  +N  FD  + R    R        
Sbjct: 254 TTITDDMVKDAGTIE----EILPQFLKFCEGSVLVAHNAGFDTGFIRENAKRLNLP---- 305

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                ++  D L + R                     F L ++     I     H A  D
Sbjct: 306 ---YDHTVVDTLGLARC-------------LMGHLGKFTLDNICKHLNIILETHHRAVDD 349

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
             AT  +         +      D  N   N    LI    M   + +        +   
Sbjct: 350 ATATGKIFVEFISMLKEKDITDLDQVNEFANDNVDLIKKGRMYHGIILVKNNTGRVNLNR 409

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS-HDELKGLVPVPIKEV-- 295
           L++    +   +   +  +L    R    + S   A  L+ +  DE        I     
Sbjct: 410 LVSESHLNYFNRRPRMPKSLINKYRDGLIIGSACEAGELYQALLDERSDETIANIVSFYD 469

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           +L   P+         E  E           N  ++           A  +  + +    
Sbjct: 470 YLEIQPVGNNEFMIGSERVENVNSIEDIQKFNQKIVDLGEQFHKPVVATCDVHFLNPDDA 529

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           +   +                     +Q + L    +   L E    Y        +   
Sbjct: 530 IYRSILLAGKGFK-----------DADQQAPLYFRTTQEMLDEFA--YLGSEKAKEVVIT 576

Query: 416 EKQDWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQ 465
                 +  + +  +   +    I +    L+ +    + E  GD+  E + + L + L 
Sbjct: 577 NTNKINDMIENISPIHPDKCPPVIPDSDKTLREICYNRAHEIYGDDLPERVTSRLEKELN 636

Query: 466 WVI 468
            +I
Sbjct: 637 SII 639


>gi|291542732|emb|CBL15842.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus
           bromii L2-63]
          Length = 1452

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/471 (13%), Positives = 136/471 (28%), Gaps = 44/471 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+ +D ET G   A D+  +   V+V       ++   F      +     +   +TGI
Sbjct: 434 TFICFDIETTGLSAARDKITEIGAVKV-ENGVITDTFSTFA---NPEMPIPQKITQLTGI 489

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          ++E      +F       ++  +N  FD  +          +    S  
Sbjct: 490 TDDMVKDAP-SQSEAVGAFLEF---AGDNVLVAHNAPFDTSFIAKACEDMGREYNYTS-- 543

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +D +    A   D            + KL  +A    +   N H A  D   
Sbjct: 544 --------IDTVAISRAILTDI----------KNCKLDTVAKFLRLGDFNHHRATDDAEM 585

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242
              +   + ++    +          ++      +  T    +        ++   LI+ 
Sbjct: 586 LARIFINLCQRLTDDYGITKTNDINTKIAGGDFKKLPTYHQIILVKNKTGLKNLYRLISY 645

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKC 300
              +  YK   I  +     R    + S   A +L+ +  E K  G +          + 
Sbjct: 646 SHLNYFYKKPRIPKSELVKYREGLIIGSACCAGQLYMAILEGKPWGELKQIASFYDYLEI 705

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
                  +  ++       +       +  L ++           +    + S+     +
Sbjct: 706 QPAGNNSFMIRDGRFNSVDELHEIDRTIIKLAKELGKPVCATCDVHFMDPTDSEFRKILM 765

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
               F D ++Q       T  E L        D+      + Y   N P+ +   +  ++
Sbjct: 766 AGQGFKDAEQQAPLYFR-TTAEMLKEFEWLGKDK-----AYEYVVEN-PNKI--ADMCEY 816

Query: 421 LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
           +    K      IE  + +L  +    + E  GD   E +   L + L  +
Sbjct: 817 IRPIPKGTFPPNIEGAQEQLIDITWKRAKEKYGDPLPEIVKARLDKELNSI 867


>gi|239827467|ref|YP_002950091.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus sp. WCH70]
 gi|239807760|gb|ACS24825.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           WCH70]
          Length = 921

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 28/209 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M + FVI D ET G      DR  Q   V +    + ++    FF     +    P    
Sbjct: 1   MKDRFVIIDLETTGNVPKKGDRIIQLGMVVI-ENGKIVDRFSSFF---NPERDIPPFVQQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T IT Q         AE + ++              +N+ FD  + +   +      + 
Sbjct: 57  LTNITEQMVADAP-SFAEEAAKVADMLQQS---YFVAHNVSFDLQFLQEELHMAGLPPF- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D +++ R ++  +              S+KL DLA    I+H   H A +
Sbjct: 112 -----SGPTIDTVELARIVFPTAE-------------SYKLGDLAKQLHIDHDQPHQADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK 208
           D   T  L   +  +  +L      +  +
Sbjct: 154 DAEVTAKLFIALLNRLRQLPFITLQHLKR 182


>gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
 gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
          Length = 1459

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/401 (13%), Positives = 109/401 (27%), Gaps = 42/401 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + ++++D ET G     D   +   V+V    +  +    F            E   +T 
Sbjct: 420 DTYIVFDIETTGFSSIKDAIIEIGAVKV-TDGKITDRFSTF---VNPKRPIPFEITNLTS 475

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  +    ++      + QF       ++  +N  FD  +                 
Sbjct: 476 ITDEMVMDSPTIDV----VLPQFLEFAGDGVLVAHNAGFDVGFIEQNCRSLGL------- 524

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +     D + + R                   + +KL  +A A  I   N H A  D  
Sbjct: 525 SDEFVYLDTVALARV-------------LLPTLSKYKLNIVAKALNISLENHHRAVDDAE 571

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     E   K         N+   R +  I+ M P  H+  +         L   
Sbjct: 572 ATAEIFVKFTEMLKKDQVGTLKEVNRYGDRNVNAIRKM-PTHHIIILAKNDIGRYNLYQL 630

Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           ++  H  Y         S      + L      +          G +   + E    +  
Sbjct: 631 ISQSHMTYYARRPRIPKSLLNEHREGLLIGSACEA---------GELYQAVHEKRSAQQI 681

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
             +   Y   E             E +  +    +L++  + I                +
Sbjct: 682 ARLAEFYDYYEIQPVGNNQFMIESERIADVNSIEDLQNINREIVELGEKFGKPVVATCDV 741

Query: 361 YDGFFADVDRQIMDRILR--TAPEQLSTLNLPFSDRRLPEL 399
           +     D   + +    +     ++   L L  +D  L E 
Sbjct: 742 HFLNPDDEVYRRIIMAGKGFDDADRQPPLFLRTTDEMLEEF 782


>gi|332365809|gb|EGJ43566.1| DNA polymerase III PolC [Streptococcus sanguinis SK355]
          Length = 1462

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSVFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CKDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      +      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|145629536|ref|ZP_01785334.1| exonuclease I [Haemophilus influenzae 22.1-21]
 gi|144978379|gb|EDJ88143.1| exonuclease I [Haemophilus influenzae 22.1-21]
          Length = 175

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 105/175 (60%), Gaps = 2/175 (1%)

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSS 353
           +H+NKCPIL P      E   R GID + CL+NL  LR   ++R++   I+N+    +S+
Sbjct: 1   MHINKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN 60

Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
            +V+++LY+GFF++ D+  M  +     E+LS   L F D+R+ EL F YRAR+F  TL+
Sbjct: 61  DNVETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLT 120

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
             E+  W ++R+  L +S +E +++ LQ L+ E+  +  K  L+  +YEY   ++
Sbjct: 121 RAEQIKWKKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLL 174


>gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1428

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/471 (14%), Positives = 139/471 (29%), Gaps = 43/471 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +       + A V+V R  E ++                P+   +TGIT
Sbjct: 416 FVVFDTETTGLNAREHTLIEIAAVKV-RGGELVDHYTSL---IDPGVPISPKIQELTGIT 471

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      +E      +F       ++  +N  FD  + ++   +     +      
Sbjct: 472 SDMVKGQPG-LSEVLEAFRKF---AAGAVLVAHNAEFDMGFLQSAARKLGQPPW------ 521

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +   D L + R +Y                 + +L+ L     +E VN H A AD  AT
Sbjct: 522 DHPVLDTLALARVLY-------------PRERNHRLKTLTQKFNVELVNHHRAAADAEAT 568

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +   +  +      +  D  N       +          +       ++   L++   
Sbjct: 569 AKVFLHLLREAEARGAHHLDECNALGEGIDVSHARPYHATILVKNPTGLKNLYRLVSLAH 628

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIK-EVHLNKCPIL 303
               ++   I      + R    + +  L   LF     L+G     +   +       +
Sbjct: 629 TRYLHRQPRIPRTEWLNYREGLMMGTGCLRGELF--QALLRGRSDEELLDIIQRYDFVEI 686

Query: 304 MPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P+D  +         D +   E +  +L           A  +  Y      +   +  
Sbjct: 687 QPLDQYRPLLRNEEIRDLEAVAEYHRRILELADRAGRPVVATGDVHYLDPEDRIYRDILQ 746

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                              E++          R  E           + ++E+   + ++
Sbjct: 747 AGSNMEVDDPDAGYHFRTTEEMLAAFGHLG-PRAVE-----VVVENANRIAEEI--EVVK 798

Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVIP 469
                L    I+  + +++SL+ E      GD   E +   L + L  +I 
Sbjct: 799 PIPDELYTPVIDGAEEQIRSLAYEKARRLYGDPLPELVKARLEKELNSIIN 849


>gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26]
 gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55]
 gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34]
 gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79]
 gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
 gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
          Length = 1432

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/399 (13%), Positives = 120/399 (30%), Gaps = 39/399 (9%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++  FV++D ET G     D+  +   V++   ++ ++           +     +   +
Sbjct: 414 LSQTFVVFDIETTGFSNTNDKITEIGAVKI-ENFKIVDRFSEL---INPEKDISYKIQEL 469

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       +E E   +  +F       ++  +N  FD  +               
Sbjct: 470 TGITNELIKDKPTIE-EILPKFMEFV---GDSVLVAHNAEFDTGFISQKCREQGL----- 520

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N + D L + R +                    +L  +A   GI  +N H A  D
Sbjct: 521 --LYNNKKVDTLMLARVM-------------LPNLKRHRLNVVAKELGIPLLNHHRAVDD 565

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +     +   +         N    +      +   +  ++      ++   +I
Sbjct: 566 AEATALIFNKFLQMLTEKGAKTLSDVNNILGKIDYTKLSTNHITLIAKNSIGIKNLYKII 625

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    +  ++   I  ++  + +    + S   A  +F +  +      +  K + L   
Sbjct: 626 SDAHVNHFFRAPRILRSVLNEYKEGLIIGSACEAGVVFQAVKKNVSDEEMK-KIIDLYDY 684

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             +MPID  +    +    D +   E    L       D+        +     +   + 
Sbjct: 685 IEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDTAKKFDKIPVATGDVHFLDKHEAVLRK 744

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
              +                 E+ + L+   +D  L E 
Sbjct: 745 VLKYSQGFKVD----------EEETYLHFRTTDEMLEEF 773


>gi|116617801|ref|YP_818172.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096648|gb|ABJ61799.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1437

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/471 (11%), Positives = 129/471 (27%), Gaps = 41/471 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV +D ET G     DR  + + V++ +    IE    +       +        +T IT
Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVKM-QLGNVIEKFSEY---INPGFPLSEFTTKLTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E    +R  +        ++  +N+ FD  +    + R            
Sbjct: 475 DAMVANSD-TEENIIKRFRE---WSGNAVLVGHNVTFDVGFMNAAYTRYNQPII------ 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N+  D L   R +Y                 S++L  +A    I    AH A  D   T
Sbjct: 525 TNAIIDTLPFTRWLY-------------PDYKSYRLGTIAKRFNINLEQAHRAIFDAETT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             + W + ++  + +         +++ +    ++  P+     +  A+           
Sbjct: 572 GHIAWRLIKEAHERYNLNRHNELNDRMTEGDAWKHGRPVHATLLVQNATGLKNLYKLVSR 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            +  +   V     S   +  + L               ++  +    K+        + 
Sbjct: 632 SNIEFFARVPRIPRSILEQYREGLLVGTGDTSGDVIISLIEKGIQEAEKKAAYYDFIEIQ 691

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P    +           ++    L  +    +   +   +      ++            
Sbjct: 692 PTANYQPMIESGLIATEEKLQSILKDMVAIGDKLKKPVVVTEDVKYTNP----EDKIYRN 747

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRL---PELFFRYRARNFPHTLSEKEKQDWL 421
                +    +     P+          D       +L  +    N    L     +D  
Sbjct: 748 ILIATQPGNPQNRTALPDLNFKTTQELLDDYAFMGADLAKKLVIDN--THLVANMLEDI- 804

Query: 422 EHRKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
           E  K       I    ++L       + ++ G+   + +   + + L+ +I
Sbjct: 805 EPLKSGSYPPNIPGAGDELTERTYRTAKQWYGEPIPKEIQARIDQELKAII 855


>gi|289424040|ref|ZP_06425828.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus anaerobius 653-L]
 gi|289155559|gb|EFD04236.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus anaerobius 653-L]
          Length = 1440

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 111/400 (27%), Gaps = 45/400 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV++D ET G     D   +   V+V +  E ++S   F            +   +T 
Sbjct: 424 QTFVVFDIETTGLSPHSDNLTEIGAVKV-QNCEIVDSFSTF---VNPKMDISYQIQELTR 479

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       +E      + +F       ++  +N  FD  +      +   +      
Sbjct: 480 ITNEMVKDAPSLE----EALPEFLEFAKDSVLVAHNADFDTGFIYQKCQQLGLEYNFEK- 534

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + R I                   F L  +    G+     H A  D  
Sbjct: 535 ------VDTLTLARIINT-------------NLKRFSLDKVCKEMGVVLAGHHRAVNDAQ 575

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS--RSNTALI 240
           AT  +     E   K         N+  +   +D + + P          +  +    LI
Sbjct: 576 ATAEVFIKYLEIFKKKGINKLSDVNR--VYGKVDYEKLRPSHATIYAQNQTGLKHLYQLI 633

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
                   Y +  I  +L  + R    + S   +  L+ +    K    +  K + L   
Sbjct: 634 TDSHIEHLYGNPRILKSLLLEKREGLIVGSACSSGELYNAVVRHKSEKEIE-KILELYDF 692

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             +MP++              +   E N  L++          A  +     +   +   
Sbjct: 693 IEIMPLENNMYLVESGELKSVEELKEINKKLVKLGEQYDKPVVATGDVHMLDAKDAIYRT 752

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           +         +   +R           L    +D  L E 
Sbjct: 753 IIKYSQGYGRKSKSER-----------LYFRTTDEMLEEF 781


>gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
 gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
          Length = 910

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 116/449 (25%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 480 TDDHVKNA-KPLEQVLQEFQEF---CKDTVLVAHNATFDVGFMNANYERHDLP------K 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 530 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 577 TGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVS 636

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 637 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYDFIEV 696

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 697 MPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIV 756

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      R       + L  
Sbjct: 757 RSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNAL-A 815

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           +  +   E  K  L    I++ +  +  L
Sbjct: 816 EIFESV-EVVKGDLYTPFIDKAEETVAEL 843


>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
 gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
          Length = 1433

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 139/478 (29%), Gaps = 51/478 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F S      +  +N  FD  +    F +   D      
Sbjct: 472 ITDDMLTDAP----EVGEVFKKFESWMGDHTLVAHNASFDMGFLNVGFKKCGLD------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KPKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP +  +         D  +    +  L++    L     A  N  Y      +  ++
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKI 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                +              P     +    ++  L    F          +     Q  
Sbjct: 747 ---LVSSQGGANPLNRHSLPP-----VYFRTTNEMLDCFSF--LGEEKAKEIVVTNTQKV 796

Query: 421 LEHR------KKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWVI 468
                     K  L   +IE   ++ +    +++    G+E  E +   L + L+ +I
Sbjct: 797 ASLIGDVHPVKDDLYTPKIEGADDETRDMSYTMARSIYGEELPEIVEARLEKELKSII 854


>gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1511

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/399 (14%), Positives = 114/399 (28%), Gaps = 45/399 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G     +R  +   VRV  +   ++    F      D     E   +TGI  
Sbjct: 487 VVFDIETTGFSPLKNRIIEIGAVRV-EEGRIVDKFSSF---VNPDVPIPFEIEKLTGIND 542

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
              L    ++    R + +F       ++  +N  FD  + +    +   +         
Sbjct: 543 NMVLDAPKID----RVLPEFLEFCRGAVMVAHNAGFDISFIKENARQQGLEFNPT----- 593

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +LD +       P+  +          FKL  +A    I   N H A  D  AT 
Sbjct: 594 -----VLDTVSLARVLLPNLNR----------FKLDTVAKELKINLANHHRAVDDAGATA 638

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245
            +     +   +   +     N+     +  I+ M P  H+  +         L   V+ 
Sbjct: 639 EIFVRFIKMLKERDIFDLSQLNELSRMTVEMIRKM-PTYHIIIIAKNDVGRVNLYRLVSE 697

Query: 246 -HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE----VHLNKC 300
            +  Y         S   +  + L      +        L+G+    I +        + 
Sbjct: 698 SNLTYFARRPRIPKSLLSQYREGLIIGSACEAGELYQALLRGVPDTEIHKIVDFYDYLEI 757

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             L    +  ++       + +    N  ++           A  +  +     +V  ++
Sbjct: 758 QPLGNNAFMLRDEKSPVNSEEELMDLNRRIVGLGEQYNKPVCATCDVHFLDPEDEVYRRI 817

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
                                +  + L L  +D  L E 
Sbjct: 818 IMSSKGFK-----------DADDQAPLYLRTTDEMLREF 845


>gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
          Length = 921

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 56/188 (29%), Gaps = 31/188 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +   +V+ D ET G D A DR  + A VR+          +             P    +
Sbjct: 2   LPQTYVVLDVETTGLDPARDRIIEIAAVRL-EGGNITRQFQTL---VNPGRPIPPAIERL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+            E    +   F   +   +G+N      + ++ + +         
Sbjct: 58  TGISDAMVREAP-PLPEVLPGLLDLFR--DAIPVGHNGTFDLAFLNQALGH--------- 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     LLD +       P             S +L  ++    +E    H A  D
Sbjct: 106 -----GWHSPLLDTLALSRILFPCLA----------SHRLDYMSKYLTLEATGHHRALDD 150

Query: 181 VYATLALV 188
           V  T  L+
Sbjct: 151 VLTTARLL 158


>gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM
           43043]
 gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM
           43043]
          Length = 590

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 59/201 (29%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D E+ G   A     +   V+V R  + I   +                  +TGI
Sbjct: 19  TFVVVDLESTGGSPAQCGITEIGAVKV-RGGDVIGEFQTL---VNPAEPIPAFISVLTGI 74

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E         F       ++  +N  FD  + +    R           
Sbjct: 75  TDAMVADSPRIE----SAFPAFLEFAAGSVLVAHNAGFDISFLKAAAVRTGTPWP----- 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G    D L + R +              D   + KL  LA          H A  D  A
Sbjct: 126 -GFDVLDTLTLARQL-----------VTRDEVPNHKLSSLARVFASPTTPDHRALHDARA 173

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   L  +  +
Sbjct: 174 TVDVLHGLIERVGNLGVHTLE 194


>gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
 gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
          Length = 1439

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/445 (12%), Positives = 119/445 (26%), Gaps = 49/445 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G      +  +   VRV       +    F                +T I
Sbjct: 412 KFVVFDIETTGFSPLTCQIIEIGAVRV-ENGVITDRFSTF---VNPKVPIPYRIEQLTSI 467

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                +       +    + QF       ++  +N  FD  +      R           
Sbjct: 468 NDSMVMDAP----DIQTILPQFLEFCAGAVMVAHNADFDMSFIIENCKRQGLPQEYT--- 520

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + + R                     FKL  +A A G+   + H A  D   
Sbjct: 521 ----YVDTVGMAR-------------FLLPALNRFKLDTVAKAVGVSLDHHHRAVDDAAC 563

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +     E   +   +  D  N+     +  I+ + P  H   +         L   V
Sbjct: 564 TAEIFVRFVEMLKERDIFDMDTLNQQGNVSVNTIKKL-PTYHAIILARNETGRVNLYKLV 622

Query: 244 AW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCP 301
           +  H +Y         S  +   + L      +        L+      I + V+     
Sbjct: 623 SQSHLKYYRRRPRVPKSLFLEHREGLLIGSACEAGELYQALLRNAPEPEIARLVNFYDYL 682

Query: 302 ILMPI----DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
            + P+         E  +R   +      N  +++     +    A  +  +     ++ 
Sbjct: 683 EIQPLGNNAFMIADEKNDRVKSNEDLIELNKKIVKLGDQFKKPVVATCDVHFMDPQDEIY 742

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
            ++                  +  +  + L L  ++  L E    Y        +     
Sbjct: 743 RRIIMAGNGF-----------SDADNQAPLYLRTTEEMLEEFS--YLGSEKAEEVVITNT 789

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQS 442
               +   + ++    +++   +++
Sbjct: 790 NKIADMI-EKISPIHPDKFPPVIEN 813


>gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1403

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 83/258 (32%), Gaps = 30/258 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     DR  +   V++    E I+    F      +     +   +T 
Sbjct: 371 EKYVVFDIETTGFSAENDRIIEIGAVKI-EDGEIIDRFSTF---VNPEVPIPFKIEKLTS 426

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     +    +E    + + +F      C++  +N  FD  + RN   +          
Sbjct: 427 INDSMVMGAPKIE----QVLPEFLEFCEGCVVVAHNAEFDTGFIRNKAAKQGM------- 475

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N+  D L + R +     +             FKL  L     +   + H A  D  
Sbjct: 476 TFDNTVVDTLAIARFLVPRLHN-------------FKLDTLTKHFNVVLTSHHRAVDDAE 522

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +   + E          D  N+     +  I+ M P  H+  +  + +    L   
Sbjct: 523 ATAGIFLKMCELLKMRDILTLDQLNEAGTPDVDAIRKM-PTYHIILLASSEQGRINLYRL 581

Query: 243 V-AWHPRYKDSVIGCNLS 259
           + A H  Y  +      S
Sbjct: 582 ISASHITYFANRPRIPKS 599


>gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
 gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
          Length = 1369

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 88/277 (31%), Gaps = 29/277 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV +D ET G     D   + A V++ +    +++               P    +TGIT
Sbjct: 354 FVFFDLETTGLIPGKDNIIEIAAVKI-KNKHIVDTFSKI---VNPHRPIPPFITNLTGIT 409

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q     G  E    +   +F       I+  +N +FD  +       +  +       N
Sbjct: 410 NQMVED-GEEEEAAVKAFCEF---CGDLILVAHNAKFDMGFMEIALNAHHLE-------N 458

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L + R                       L+ LA    ++  + H A  D   +
Sbjct: 459 NITYIDTLAMSRT-------------LIPTINKHNLKKLASYFKVDMGHHHRALDDSVCS 505

Query: 185 LALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
             +   L+   + +  E +        + ++I   +   ++  +      +    L++  
Sbjct: 506 AKIFVKLMELAQKRDVEEVAGLNGLMDVEQIIKSGDTYHIIIYAKNQAGLKDLYKLVSEA 565

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS 280
             +  Y+   I  +L    R    + S   A  L+ +
Sbjct: 566 HINYFYRRPRIPKSLLAAHRENLIIGSACEAGELYKA 602


>gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus salivarius SK126]
 gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus salivarius SK126]
          Length = 1464

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/446 (12%), Positives = 117/446 (26%), Gaps = 34/446 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIIEQFDEF---IDPGHPLSAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 481 TDNHVKGA-KPLVQVLQEFQEF---CQGTVLVAHNATFDVGFMNANYERHQLP------T 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +            +   +L      +          +   +          
Sbjct: 578 TGRLLFIFIKDVFDKHGLTNLEQLNTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     +      + +               L   +   ++         +
Sbjct: 638 LSNVSYFEGVARIPRTVLDEYREGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    D     + +  L +  N  D+        +  + +D   +    
Sbjct: 698 MPPAIYAPLIAKDLIKDEAAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 757

Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418
                   I   I       P  L   +   ++  L +  F  +  A     T ++    
Sbjct: 758 RALGQGAMINRPIGKGENAKPAPLPEAHFRTTNEMLDDFAFLGKDLAYEIVVTNTQAMAN 817

Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442
                E  KK L    I+  + ++  
Sbjct: 818 QIEEVEVVKKDLYTPFIDRAEEQVAE 843


>gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330]
          Length = 1462

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/450 (12%), Positives = 118/450 (26%), Gaps = 40/450 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLCKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPEL-------FFRYRARNFPHTLS 413
                               P  L   +   ++  L E          +    N P+ L 
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFTFLGEDLAKKLVITN-PNQL- 813

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
             E  + +E  K  L    I++ +  +  L
Sbjct: 814 -AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|302387397|ref|YP_003823219.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
 gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
          Length = 222

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 54/196 (27%), Gaps = 26/196 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            ++V++D ET G   A D   + + ++V +  E +                   A  I G
Sbjct: 16  ENYVVFDLETTGISPAEDSILEISAIKV-KGHEPVAELNTL---VNPGTHIPAGATRING 71

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E       F       ++G+N   FD  +        F       +
Sbjct: 72  ITDDMVKAAPG-LKEVLPDFLSFIE--GEILVGHNIQSFDLLFLYRAAQELFGKEVPNDY 128

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + +                      +L D++    I    AH A +D  
Sbjct: 129 ------VDTLFMAKT-------------TLPQLGRHRLTDISAYFHINTEGAHRALSDCV 169

Query: 183 ATLALVWLIREKKPKL 198
                   + +   K 
Sbjct: 170 MNQKCYEQMGKLVHKE 185


>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
 gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
          Length = 1433

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/477 (13%), Positives = 136/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V++ +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKI-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +     T++     L +               D +  +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAIY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   ++  L    F     +    +         
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTNEMLDCFSF--LGEDKAKEIVVTNTNKIA 797

Query: 422 EHR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ +     ++    GDE  E +   L + L+ +I
Sbjct: 798 SLIGDVRPVKDDLYTPKIEGADDETRDMSYVMARSIYGDELPEIVEARLEKELKSII 854


>gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72]
          Length = 1462

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHNLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D +     +  L+     L     A  +  Y    +++  ++  
Sbjct: 696 MPPAIYEPLISKEQIKDQEELQTIIRNLIEVGDRLGKPVLATGDVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      +      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
 gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
          Length = 1529

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/391 (14%), Positives = 106/391 (27%), Gaps = 35/391 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G     +R  +   V++ R  E +E    F                +T I
Sbjct: 497 TFVVFDIETTGFSPIKNRIIEIGAVKI-RNGEILERFSEF---INPQVPIPYRIEKLTSI 552

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  +       E    I +F       ++  +N+ FD  +          D    +  
Sbjct: 553 TDEMVMDAPT--REVI--IPKFVEFCKDAVLVGHNVAFDISFINQNCQDLGIDVDYTT-- 606

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +D +     F                  L  +A    +   + H A  D   
Sbjct: 607 --------VDTLWLARYFF----------PLQAKHTLDAVAKTLNVVLDHHHRAVDDAEC 648

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +         +         N         I+++ P  H   +   +     L   V
Sbjct: 649 TALIFNKFIPMLKEQKAENLTDVNILGKPTPEMIRHLRP-NHCIILAKNTLGRVNLYTLV 707

Query: 244 A-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-----KEVHL 297
           +  H  Y         S  ++  + L               ++G  P  I        +L
Sbjct: 708 SKSHIDYFRRFPLIPKSELLKYREGLIIGSACCAGELYGAVVEGRPPEEIAGLVNFYDYL 767

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
              P+         + +E    D      N  ++R          A  +  + +   ++ 
Sbjct: 768 EIQPVGNNHFMVDSDRYEDINSDDDIREINKEIVRLGEQFNKPVVATCDAHFLNPEDEIY 827

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLN 388
             +        D +     LRT  E ++  +
Sbjct: 828 RTIIMAGKGMNDEEPAPLFLRTTEEMMAEFD 858


>gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
 gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
          Length = 1535

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/404 (14%), Positives = 105/404 (25%), Gaps = 46/404 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     DR  +   V+V    +  +    F                +T I
Sbjct: 488 TYVVFDIETTGFSAVTDRIIEIGAVKV-EDGKITDKFSTF---VNPKRPIPFRITELTSI 543

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  +    +E      + QF       ++  +N  FD  +      R   ++      
Sbjct: 544 TDEMVIDSPDIE----TILPQFIEFIGDAVLVAHNASFDVGFIEQNCKRQKIEA------ 593

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D + + R                     FKL  +A A  I   N H A  D   
Sbjct: 594 -DFTYVDTVALARV-------------LLPALNRFKLDTVAKALNISLENHHRAVDDAGC 639

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +     +   +         N+        I+ + P  HV  +         L   V
Sbjct: 640 TAEIFVKFVQMLKERELTTLAKVNEFGDLNPDSIKKL-PTYHVIILARNDIGRVNLYQLV 698

Query: 244 -AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCP 301
            A H  Y +       S      + L      +        L G     I K V      
Sbjct: 699 SASHLVYYNRRPRIPKSVLNEHREGLIVGSACEAGELYRALLDGKPDETIAKIVDFYDYL 758

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE----NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
            + P+                   +    N  ++              +  +     +V 
Sbjct: 759 EIQPLGNNAFMVESDKVTSVNSMEDIMDLNQKIVHLGEQFHKPVVGTCDVHFMDPEDEVY 818

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
            ++                     ++ + L L  ++  L E  +
Sbjct: 819 RRIIMAGKGFG-----------DADKQAPLYLRTTEEMLDEFAY 851


>gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 580

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 26/202 (12%)

Query: 4   HFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F + D ET G          +   V+V R  E +   +             P    +TG
Sbjct: 43  TFCVVDLETTGNSPDNGGMITEIGAVKV-RGGEVLGEFQTL---VNPHTGIPPSIAVLTG 98

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         +E+     +  F      C++  +N  FD  +            +    
Sbjct: 99  ITNSMVASSPTIES----VLPAFLEFAEGCVLVAHNAPFDVGF---------LKHFAAKQ 145

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +    R+++LD ++                D A + KL  LA   G      H A  D  
Sbjct: 146 ERPWPRFEVLDTVKIARRV--------ITRDEAPNHKLGSLARVFGSPTTPNHRALQDAR 197

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT+ ++  + E+   L     +
Sbjct: 198 ATVDVLHGMMERLGNLGVLTLE 219


>gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813]
          Length = 1468

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   A +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSAFTTELTGI 484

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T               + + +F +     ++  +N  FD  +    + R+          
Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581

Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++    +    L +   K           +             ++   L++
Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     S      + L               L   +   +         
Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355
            +MP    +         D     + +  L +      +  L                + 
Sbjct: 700 EVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411
           +   L  G   +      +         L   +   ++  L E  F  +  A      +T
Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            +  ++ + +E  K  L    ++  + ++  L
Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848


>gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1]
 gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1]
          Length = 1375

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 70/475 (14%), Positives = 143/475 (30%), Gaps = 45/475 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     +   + A V++ R  E I+  E F       +      + +TG
Sbjct: 423 DTYVVFDVETTGLSAMYNTIIELAAVKI-RDGEIIDRFESFA---NPHHPLSATTINLTG 478

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E +  +  F       ++  +N  FD  +    + +   D      
Sbjct: 479 ITDDMVEGAP----EVAEALKAFKDWAGDAVLVAHNASFDMGFLNVGYGKAGLD------ 528

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R +Y                 + +L  LA    +E    H A  D  
Sbjct: 529 KAENPVIDTLELARLLY-------------PEMKNHRLNTLAKKFDVELTQHHRAIYDAE 575

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  + +   +     +D  N + + K    +   P                    
Sbjct: 576 ATGYLLLKMLKDANEKGIIYHDQFN-DYMGKGDAYKRSRPSHVTLLAQTEEGLKNLFKLV 634

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              H  Y   V     S   +    +       +       ++       +         
Sbjct: 635 TISHLEYFFRVPRIPRSLLQKYRSGILVGSGCDKGEVFEGMMQKAPEEVEEAARFYDYLE 694

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + P +  +           +   E +  +++    L     A  N  Y + +  V  ++ 
Sbjct: 695 VHPKEVYQHLIELELIQSDQNLEEIIGNIVQLGEKLDLPVVATGNVHYINPTDKVHREIL 754

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQD 419
            G     +     +        L  ++   ++  L    F  + +A+    T + K    
Sbjct: 755 VGSQGGANPLNRHK--------LPDVHFRTTNEMLDCFSFLGKEKAKEIVVTNTNKIADL 806

Query: 420 WLEH--RKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
             E    K  L   +IE    +++     ++    G+E  E +   L + L+ +I
Sbjct: 807 IDEIKPIKDDLYTPKIEGADEEMRRMSYAMAKSIYGEELPEIVEARLEKELKSII 861


>gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
 gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
          Length = 1468

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   A +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSAFTTELTGI 484

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T               + + +F +     ++  +N  FD  +    + R+          
Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581

Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++    +    L +   K           +             ++   L++
Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     S      + L               L   +   +         
Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355
            +MP    +         D     + +  L +      +  L                + 
Sbjct: 700 EVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411
           +   L  G   +      +         L   +   ++  L E  F  +  A      +T
Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            +  ++ + +E  K  L    ++  + ++  L
Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848


>gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9]
 gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus
           thermophilus LMD-9]
 gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03]
          Length = 1464

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/446 (12%), Positives = 116/446 (26%), Gaps = 34/446 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       Y        +TGI
Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIVEQFDEF---IDPGYPLSAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 481 TDNHVKGA-KPLVQVLQEFQEF---CKGAVLVAHNATFDVGFMNANYERHQLP------T 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +   +L      +          +   +          
Sbjct: 578 TGRLLFIFIKDVFEKHGLTNLEQLNTELVSDDSYKKSRVKHATLYVQNQTGLKNLFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V            + +               L   +   ++         +
Sbjct: 638 LSNVSYFEGVARIPRKVLDEYREGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    D     + +  L +  N  D+        +  + +D   +    
Sbjct: 698 MPPAIYAPLIAKDLIKDEGAIEQLIKDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 757

Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418
                   I   I       P  L   +   ++  L E  F  +  A       ++    
Sbjct: 758 RALGQGAMINRPIGKGENAQPAPLPEAHFRTTNEMLDEFAFLGKDLAYEIVVANTQAMAN 817

Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442
                E  KK L    I+  + ++  
Sbjct: 818 QIEEVEVVKKDLYTPYIDRAEEQVAE 843


>gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1516

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 108/404 (26%), Gaps = 45/404 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +++ +V++D ET G   + +R  +   V+V       +    F      D     E   +
Sbjct: 488 LSDSYVVFDIETTGFSSSRNRIIEIGAVKV-ENGTIADKFSTF---VNPDVPIPFEIEKL 543

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI     L    +  E   R  +F       ++  +N  FD  +      R        
Sbjct: 544 TGINDNMVLPYPKIN-EILPRFLEF---CGNSVLVAHNAAFDVSFIAYNAARLNL----- 594

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                 +  D + + R                     +KL  +A A  +   N H A  D
Sbjct: 595 --AFEPTVIDTVALARL-------------LLPNLNRYKLDTVAKALVVSLENHHRAVDD 639

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
              T  +     +   +      D  N         I+ + P  HV  +         L 
Sbjct: 640 AGCTAEIFVAFVKMLRERGVETLDELNGLSTMSADMIKKL-PTHHVIILAANDVGRVNLY 698

Query: 241 APV-AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP----VPIKEV 295
             +   H  +         S   +  + L      +        L+G+        +   
Sbjct: 699 RLISYSHIDFYARRPRIPKSVLNQNREGLIVGSACEAGEIYQALLRGVSDAELAKLVNFY 758

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
              +   L    +  ++       +      N  ++           A  +  +     +
Sbjct: 759 DYLEIQPLGNNGFMLRDEKSSVKSEQDLIEINQRIVTLGEQFGKPVCATCDVHFLDPEDE 818

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           V  ++        D            +  + L L  ++  L E 
Sbjct: 819 VYRRIIMAGQGFKDS-----------DDQAPLYLRTTEEMLKEF 851


>gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
           SK121]
 gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
           SK121]
          Length = 608

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 64/201 (31%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     D   +   V++ R  E +                 P  V +TGI
Sbjct: 62  TFVVVDLETTGGSADQDSITEIGAVKI-RGGEVLGEMATL---VDPGRSIPPYIVELTGI 117

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E    R +  F       ++  +N  FD  + +    R+          
Sbjct: 118 TTAMLIGAPPIE----RVLPAFLEFAEGAVLVAHNAPFDIGFLKAAASRSARPWPA---- 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + +L  ++                D A S KL  LA    +     H A  D  A
Sbjct: 170 -----FRVLCTVKLARRVL--------TRDEAPSVKLSALAHLFQVTTQPTHRALDDARA 216

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++      + Y 
Sbjct: 217 TVDVLHGLIDRVGNQGVHSYS 237


>gi|226307078|ref|YP_002767038.1| DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4]
 gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus
           erythropolis PR4]
          Length = 586

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 64/201 (31%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     D   +   V++ R  E +                 P  V +TGI
Sbjct: 40  TFVVVDLETTGGSADQDSITEIGAVKI-RGGEVLGEMATL---VDPGRSIPPYIVELTGI 95

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E    R +  F       ++  +N  FD  + +    R+          
Sbjct: 96  TTAMLIGAPPIE----RVLPAFLEFAEGAVLVAHNAPFDIGFLKAAASRSARPW------ 145

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + +L  ++                D A S KL  LA    +     H A  D  A
Sbjct: 146 ---PSFRVLCTVKLARRVL--------TRDEAPSVKLSALAHLFQVTTQPTHRALDDARA 194

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++      + Y 
Sbjct: 195 TVDVLHGLIDRVGNQGVHSYS 215


>gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1565

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/402 (14%), Positives = 108/402 (26%), Gaps = 45/402 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     ++  +   V+V       +    F      D     +   +TG
Sbjct: 540 DTFVVFDIETTGFSPKKNKIIEIGAVKV-VDGRITDKFSTF---VNPDVPIPFDIEKLTG 595

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     L     + +    + QF       ++  +N  FD  +  +   +          
Sbjct: 596 INDSMVL--PYPKIDVI--LPQFLEFVGDAVLVAHNASFDVGFIGHFAEKLELPFDPT-- 649

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   +LD +       P+  +          FKL  +A A  I   N H A  D  
Sbjct: 650 --------VLDTVAIARLLLPNLNR----------FKLDTVAKALNISLQNHHRAVDDAG 691

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     +          +  N         I+ + P  HV  +         +   
Sbjct: 692 ATAEIFAAFVKMLRDRDVNDLNQLNALSTMDTDTIRKL-PTHHVIILAKNDIGRVNMYRL 750

Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KEVHL 297
           V+W H  Y         S   +  + L      +        L+G     I         
Sbjct: 751 VSWSHLEYYARRPRIPKSLLEKYREGLIIGSACEAGELYQALLRGAPDTEIARLVSFYDY 810

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
            +   L    +  ++              N  ++           A  +  +     +V 
Sbjct: 811 LEIQPLGNNAFMLRDEKSTVKSQEDLIEINKKIVELGMQFNKLVCATCDVHFLDPQDEVY 870

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
            ++        D            +  + L L  ++  L E 
Sbjct: 871 RRIIMAGQGFKDS-----------DDQAPLYLRTTEEMLEEF 901


>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
 gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 1433

 Score =  114 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/477 (13%), Positives = 136/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +     T++     L +               D +  +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAIY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   ++  L    F     +    +         
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTNEMLDCFSF--LGEDKAKEIVVTNTHKIA 797

Query: 422 EHR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ +     ++    GDE  E +   L + L+ +I
Sbjct: 798 SLIGDVRPVKDDLYTPKIEGADDETRDMSYIMARSIYGDELPEIVEARLEKELKSII 854


>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
 gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
          Length = 1435

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 67/477 (14%), Positives = 136/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 473

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 474 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIE------ 523

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 524 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 570

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + L  ++      ++   L++
Sbjct: 571 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVS 630

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 631 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 688

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +     T++     L +               D +  +Y
Sbjct: 689 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAIY 745

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   ++  L    F     +    +         
Sbjct: 746 RKILVSSQGGANPLNRHSLPP----VHFRTTNEMLDCFSF--LGEDKAKEIVVTNTHKIA 799

Query: 422 EHR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ +     ++    GDE  E +   L + L+ +I
Sbjct: 800 SLIGDVRPVKDDLYTPKIEGADDETRDMSYIMARSIYGDELPEIVEARLEKELKSII 856


>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
 gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
          Length = 1433

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/477 (13%), Positives = 136/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +     T++     L +               D +  +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAIY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   ++  L    F     +    +         
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTNEMLDCFSF--LGEDKAKEIVVTNTHKIA 797

Query: 422 EHR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ +     ++    GDE  E +   L + L+ +I
Sbjct: 798 SLIGDVRPVKDDLYTPKIEGADDETRDMSYIMARSIYGDELPEIVEARLEKELKSII 854


>gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1520

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 56/401 (13%), Positives = 109/401 (27%), Gaps = 42/401 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + ++++D ET G     D   +   V+V    +  +    F            E   +T 
Sbjct: 481 DTYIVFDIETTGFSSIKDAIIEVGAVKV-TDGKITDRFSTF---VNPKRPIPFEITNLTS 536

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  +    ++      + QF       ++  +N  FD  +                 
Sbjct: 537 ITDEMVMDSPTIDV----VLPQFLEFAGDGVLVAHNAGFDVGFIEQNCRSLGL------- 585

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +     D + + R                   + +KL  +A A  I   N H A  D  
Sbjct: 586 SDEFVYLDTVALARV-------------LLPTLSKYKLNIVAKALNISLENHHRAVDDAE 632

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     E   K         N+   R +  I+ M P  H+  +         L   
Sbjct: 633 ATAEIFVKFTEMLKKDQVGTLKEVNRYGDRNVNAIRKM-PTHHIIILAKNDIGRYNLYQL 691

Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           ++  H  Y         S      + L      +          G +   + E    +  
Sbjct: 692 ISQSHMTYYARRPRIPKSLLNEHREGLLIGSACEA---------GELHQAVHEKRSAQQI 742

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
             +   Y   E             E +  +    +L++  + I                +
Sbjct: 743 ARLAEFYDYYEIQPVGNNQFMIESERIADVNSIEDLQNINREIVELGEKFGKPVVATCDV 802

Query: 361 YDGFFADVDRQIMDRILR--TAPEQLSTLNLPFSDRRLPEL 399
           +     D   + +    +     ++   L L  +D  L E 
Sbjct: 803 HFLNPDDEVYRRIIMAGKGFDDADRQPPLFLRTTDEMLEEF 843


>gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1489

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 64/482 (13%), Positives = 131/482 (27%), Gaps = 60/482 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G      +  +   V V    E  +    F                +T I 
Sbjct: 462 FVVFDIETTGFSSLTCQIIEIGAVLV-ENGEITDRFSTF---VNPKVPIPFRIEQLTSIN 517

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +    +E      + +F       ++  +N  FD  +      R           +
Sbjct: 518 DSMVMDAPTIE----EVLPKFLEFSKDAVMVAHNADFDMGFIMKNCDRLGI-------AH 566

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D + + R                     FKL  +A A G+   N H A  D   T
Sbjct: 567 DFTYVDTVGMAR-------------FLLPALNRFKLDTVAKAVGVSLENHHRAVDDAACT 613

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +     +   +      D  N+     +  I+ + P  HV            L   V+
Sbjct: 614 AEIFVKFVKMLEERDIRDVDMLNEQGAVSVNTIRKL-PTYHVIIFARNETGRINLYKLVS 672

Query: 245 W-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPI 302
             H +Y         S   +    L      +        L+      I + V+      
Sbjct: 673 QSHLKYYHRRPRVPKSVLEQYRDGLLVGSACEAGELYQAILRNAPDTEIARLVNFYDYLE 732

Query: 303 LMPI----DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           + P+         +  +    +      N  +++     +    A  +  +     ++  
Sbjct: 733 IQPVGNNRFMIADDKHDMISSEEDLKEINRKIVKLGEQFKKPVVATCDVHFMDPQDEIYR 792

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           ++                  +  ++ + L L  ++  L E    Y        +      
Sbjct: 793 RIIMAGNGF-----------SDADEQAPLYLRTTEEMLEEFA--YLGSEKAEEVVITNTN 839

Query: 419 DWLEHRKKMLT-------RSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
              +   + ++          IE     L+++    + E  GD   E + + L   L  +
Sbjct: 840 KIADMI-EKISPIHPDKFPPVIENSDQDLKNICFTKAHEMYGDPLPEIVESRLDRELNSI 898

Query: 468 IP 469
           I 
Sbjct: 899 IS 900


>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
 gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
          Length = 1433

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 66/477 (13%), Positives = 136/477 (28%), Gaps = 49/477 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   + A V+V +  E I+  E F              + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKV-KGGEIIDRFESFA---NPHQPLSATIIELTG 471

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E      +F        +  +N  FD  +    F +   +      
Sbjct: 472 ITDDMLTDAP----EVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKVGIE------ 521

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L++ R                    + +L  +     IE    H A  D  
Sbjct: 522 KTKNPVIDTLELAR-------------FLFPEMKNHRLNTMCKKLDIELTQHHRAIYDTE 568

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           AT  L+  ++++   K FEY     +             + +  ++      ++   L++
Sbjct: 569 ATGYLLVKMLKDVIEKGFEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVS 628

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y+   +  +L    R    + +      +F     ++       +        
Sbjct: 629 YSHLNYFYRVPRVPRSLLKKYREGILVGTACDKGEVF--EAMMQKAPEEVEEIAQFYDYI 686

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            +MP +  +         D  +     T++     L +               D +  +Y
Sbjct: 687 EVMPPEVLRHLVERELVRDEGQLK---TIISNLVKLGETLDKPVVATGNVHYLDPEDAIY 743

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                            + P     ++   ++  L    F     +    +         
Sbjct: 744 RKILVSSQGGANPLNRHSLPP----VHFRTTNEMLDCFSF--LGEDKAKEIVVTNTHKIA 797

Query: 422 EHR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
                    K  L   +IE   ++ +     ++    GDE  E +   L + L+ +I
Sbjct: 798 SLIGDVRPVKDDLYTPKIEGADDETRDMSYIMARSIYGDELPEIVEARLEKELKSII 854


>gi|169350436|ref|ZP_02867374.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
 gi|169292756|gb|EDS74889.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
          Length = 1439

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 66/488 (13%), Positives = 142/488 (29%), Gaps = 62/488 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V +D ET G  V  D   +F  V++ +  E I+  + F                +T I
Sbjct: 401 TYVAFDLETTGLSVIHDGITEFGAVKI-KNGEVIDRMQKF---INPGKTISSRISSLTNI 456

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +    +  ++ +    I +FF     CI+  +N  FD  +      R+          
Sbjct: 457 TNEMVKNEPTID-KVLPEIMEFF---GDCILVAHNASFDVGFLNENLRRSNMSEI----- 507

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181
             N   D L + RAI                  S++L ++  +     +   AH A  D 
Sbjct: 508 -KNPIIDSLALARAI-------------LKPMKSYRLGNVCRSYRVNYDDEVAHRADYDA 553

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
                +  L+  +  +  +Y      K     +  I     +  ++      ++   L++
Sbjct: 554 KVLGDVFNLMIHQIMQSEKYSLLDVCKLTSDDVYKIVYPYHMCALALNKTGLKNMFKLVS 613

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
                  + +S I        R      S      +F +   L          +      
Sbjct: 614 EANTKYFHGESRIPKERLEYYREGLLFGSSCYNSDVFEAALNLSDERLEN--AMKFYDYI 671

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQL 360
            + P++            D    +++L  +       ++        +       +   +
Sbjct: 672 EIQPLEDYFHLIERGKLQDKDELIKSLQRIVTCAKKLNKIIVATGDVHFLDVKDRIFRDV 731

Query: 361 YDGFFADVDRQIMDRI--LRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           +              +   R    +     L  +D  L           +P  LS++E  
Sbjct: 732 FISNPTIGIGHKAHPLCDRRNPKAKNPCQYLRTTDEMLEC---------YP-YLSKEETF 781

Query: 419 DW--------------LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINAL 460
           ++              ++     L   +I+     L+ L    + +  G+     +   L
Sbjct: 782 EYVVTNTNKIADMVEEIKPIHDKLFTPKIDGADENLKKLCYETAHKTYGNPLPSIVEKRL 841

Query: 461 YEYLQWVI 468
            + L  +I
Sbjct: 842 EKELSNII 849


>gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
 gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
          Length = 529

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 60/191 (31%), Gaps = 25/191 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     D   +   ++  R  + I +   F                +TGI
Sbjct: 22  TFVVVDLETTGLKAKNDHIIEIGAIKT-RGGKTIGTFSSF---IDPGMEIPDHITSLTGI 77

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +    I QF       +   +N +FD  + R        D       
Sbjct: 78  TTADVETAP----QLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWP----- 128

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              S  D L + R +                  SFKL  LA   G  +  AH A  D  A
Sbjct: 129 -SPSVVDTLTLARRV-----------LDRSQVGSFKLSQLARYVGSPNRPAHRALDDAIA 176

Query: 184 TLALVWLIREK 194
           T+ ++  + E+
Sbjct: 177 TVDVLHYLMER 187


>gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827]
 gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827]
          Length = 578

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 66/201 (32%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G   A D   +   V+V R    I            +    P+ V +TGI
Sbjct: 30  TFVVFDLETTGPRAAEDGITEIGAVKV-RGGRVIGEFGTL---VDPERGIPPQIVALTGI 85

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        V     +  +  F       ++  +N  FD  + +    R+ Y        
Sbjct: 86  TQNMVTGAPV----LASVLPAFLEFAEGAVLVAHNSGFDVGFMKAACERHGYAWP----- 136

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                       +     +    +     + A S KL  L+   G+     H A  D  A
Sbjct: 137 ------------KPPVVCTVKLARRVLSREEAPSCKLSALSALFGVPEAPNHRALVDARA 184

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   +  +  +
Sbjct: 185 TVEVLHRLLERVGSVGVHSLE 205


>gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066]
 gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus
           CNRZ1066]
          Length = 1464

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 56/446 (12%), Positives = 116/446 (26%), Gaps = 34/446 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       Y        +TGI
Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIVEQFDEF---IDPGYPLSAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 481 TDNHVKGA-KPLVQVLQEFQEF---CKGAVLVAHNATFDVGFMNANYERHQLP------T 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +   +L      +          +   +          
Sbjct: 578 TGRLLFIFIKDVFEKHGLTNLEQLNTELVSDDSYKKSRVKHATLYVQNQTGLKNIFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V            + +               L   +   ++         +
Sbjct: 638 LSNVSYFEGVARIPRKVLDEYREGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    D     + +  L +  N  D+        +  + +D   +    
Sbjct: 698 MPPAIYAPLIAKDLIKDEGAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 757

Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418
                   I   I       P  L   +   ++  L E  F  +  A       ++    
Sbjct: 758 RALGQGAMINRPIGKEENAQPAPLPEAHFRTTNEMLDEFAFLGKDLAYEIVVANTQAMAN 817

Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442
                E  KK L    I+  + ++  
Sbjct: 818 QIEEVEVVKKDLYTPYIDRAEEQVAE 843


>gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 623

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 57/188 (30%), Gaps = 25/188 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     DR  +   V++ R  E +                 P+ V +TGI
Sbjct: 58  TFVVVDLETTGGSADDDRITEIGAVKI-RGGEVLGEFATL---VDPGRAIPPQIVALTGI 113

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E E      +F       ++  +N RFD  + R    R        +  
Sbjct: 114 TTAMLYDAPRIE-EVLPAFAEF---ARGTVLVAHNARFDMGFLRKSAARMRLPWPFSTS- 168

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L  +                   A + KL  LA    +     H A  D  A
Sbjct: 169 --------LCTVVMARRIL--------SRQEAPTVKLSALAELFQVSVRPTHRALDDARA 212

Query: 184 TLALVWLI 191
           T+ +   +
Sbjct: 213 TVEVFHRL 220


>gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio
           fibrisolvens 16/4]
          Length = 1480

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/405 (12%), Positives = 117/405 (28%), Gaps = 48/405 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G +   ++  +   V+  +  E ++    F      +         +T 
Sbjct: 446 DEYVVFDIETTGFNPKNNKIIEIGAVKF-KDGEIVDHFSEF---INPEVPIPYRITELTS 501

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    L    +  +    + +F       ++  +N  FD  + R    +   +      
Sbjct: 502 ITDDMVLDAPTI--DVI--LPKFMEFCKGTVLVAHNAGFDTSFIRYNCKQLGLEYDYTH- 556

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D ++V R                     F L  +     + + + H A AD  
Sbjct: 557 ------VDTVEVAR-------------YLHPNNARFNLDAVCKLENVVNEHHHRAVADAE 597

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA-LI 240
            T  +    I + + +    L +  +K + +     +       V       R N   L+
Sbjct: 598 VTAKIFEKFIVKLEAENIHTLTELNDKAKPKAEQIKKMKAHHCIVLAKNDLGRINLYRLV 657

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +        +   +  +L  + R    + S   A  L+ +  + +    V  +       
Sbjct: 658 SESHLKYFSRYPRVPKSLLSECREGLIIGSACEAGELYDAIVDDRDDSEVA-RIASFYDY 716

Query: 301 PILMPIDYC------KKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
             + P+          K  +E +         N  ++           A  +  +     
Sbjct: 717 LEIQPVGNNEFMIRSDKPKYENFNSVKDLQDVNKKIVALGEEFNKPVVATCDVHFLDPQD 776

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           ++  ++                     +Q + L L  +D  L E 
Sbjct: 777 EIYRRIIMANKGFD-----------DADQQAPLYLHSTDEMLEEF 810


>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1406

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 70/482 (14%), Positives = 144/482 (29%), Gaps = 59/482 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + F ++D ET G     D   +   V++ ++ + I++ E F                +TG
Sbjct: 391 DEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKLTG 446

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I          +E E   +  +F    N+ ++ +N      +        N         
Sbjct: 447 IDESMVKDAPSIE-EILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLN------- 496

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N+  D L++ R                    ++KL  LA    ++  + H A  D  
Sbjct: 497 -VNNTVLDTLELSR-------------HLYKDLKNYKLDTLAEHLQVKLEHHHRAVDDAR 542

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     ++  +L        N + LR+        P+ HV+ +    R    L   
Sbjct: 543 ATAEIFIKTIDRLKELGVKKVKDIN-DILRESEVDIKKLPVYHVTILVKDQRGLRNLYEI 601

Query: 243 VA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV----PIKEVHL 297
           ++  +  Y         S  + + + L      ++       L  L        I     
Sbjct: 602 ISKSNLEYFHRTPRIPKSLLISMREGLIIGSACEQGEVFRAILSNLEEKKLENIISFYDY 661

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
            +   +   ++  ++   +   + K     + LL           A  +  +     D+ 
Sbjct: 662 LEVQPVGNNEFLIEKGEVKSVEELKEINRRIYLL--GKKYNKLVVATGDVHFLDPWDDIY 719

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
            ++                     ++   L    +D  L E  F Y        +     
Sbjct: 720 RKILMAGKGYK-----------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNP 766

Query: 418 QDWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
               +  +++  +        IE  + +L+ L    + E  GD   E + N L   L  +
Sbjct: 767 NKIADLIEEVKPIPDGTFPPVIEGAEEELRKLTLDKAHEIYGDPLPEIVQNRLDRELNSI 826

Query: 468 IP 469
           I 
Sbjct: 827 IN 828


>gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
 gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
          Length = 1468

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   A +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSDFTTELTGI 484

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T               + + +F +     ++  +N  FD  +    + R+          
Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581

Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++    +    L +   K           +             ++   L++
Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     S      + L               L   +   +         
Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355
            +MP    +         D     + +  L +      +  L                + 
Sbjct: 700 EVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411
           +   L  G   +      +         L   +   ++  L E  F  +  A      +T
Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            +  ++ + +E  K  L    ++  + ++  L
Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848


>gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
 gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
          Length = 1468

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   A +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSDFTTELTGI 484

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T               + + +F +     ++  +N  FD  +    + R+          
Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581

Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++    +    L +   K           +             ++   L++
Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     S      + L               L   +   +         
Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355
            +MP    +         D     + +  L +      +  L                + 
Sbjct: 700 EVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411
           +   L  G   +      +         L   +   ++  L E  F  +  A      +T
Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            +  ++ + +E  K  L    ++  + ++  L
Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848


>gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909]
 gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae A909]
          Length = 1468

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   A +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSDFTTELTGI 484

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T               + + +F +     ++  +N  FD  +    + R+          
Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581

Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++    +    L +   K           +             ++   L++
Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     S      + L               L   +   +         
Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355
            +MP    +         D     + +  L +      +  L                + 
Sbjct: 700 EVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411
           +   L  G   +      +         L   +   ++  L E  F  +  A      +T
Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            +  ++ + +E  K  L    ++  + ++  L
Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848


>gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 1442

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 90/287 (31%), Gaps = 29/287 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV +D ET G     D   + A V++ +    +++ + F            +   +T IT
Sbjct: 427 FVFFDLETTGLYAGRDAIIEIAAVKI-KNKHVLDTFQTF---VNPHRPIPQKITELTSIT 482

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q   +    EA     +  F    +  I+  +N  FD  +      R           N
Sbjct: 483 DQMVAQGKEEEA----AVRAFLDFCDGKILAAHNASFDMGFMSIALERYGIP-------N 531

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L + R                       L+ LA    I+  + H A  D   +
Sbjct: 532 TITYVDTLPMART-------------LIPDIARHNLKKLASYFKIDMGHHHRAIDDSICS 578

Query: 185 LALVWLIREKKPKLFEYLYDYRNK-NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
             +   +     K         N+  +L ++I  +    ++  +      ++   L++  
Sbjct: 579 AKIFVRLMGLAEKQHCDRAADLNRLMRLEQIIKTERPYHVIIYAKDQDGLQALYDLVSAS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290
                YK   I  +L    R    + S   A  L+T+  E      +
Sbjct: 639 HVDYFYKKPRIPKSLLQKKRKHLLIGSACEAGELYTAVKENWNDARL 685


>gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444819|gb|EDP21823.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1417

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 57/386 (14%), Positives = 119/386 (30%), Gaps = 31/386 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F ++D ET G D  ++   +   V + R  E +E  + F           P+   +TGIT
Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVII-RNGEVVEEFDTF---VKPGKPITPKITELTGIT 452

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E E       F    +  ++G+N   FD  + R    R+           
Sbjct: 453 NEMVADAP-SEKEALEAFLAF--AGDRILVGHNVHAFDMRFLRAAAKRSGI-------KL 502

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L + + +Y    +             +K   +     +    AH A  D  A 
Sbjct: 503 EPTYIDTLTMAQTMYPGLHN-------------YKQGTINKHLELPAYEAHRACEDSAAL 549

Query: 185 LALVWLI-REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
             +  ++  +   K    + +        + +  +    L+ +       ++   +++  
Sbjct: 550 GRIFCVMLNDLAEKEVTKVSEINTGLGGNREVLKKKYYHLIILVKNQMGLKNLYKIVSEA 609

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  +K   +  +L    R    L S   A  L+ +  +      +  K         +
Sbjct: 610 HVNYFFKKPRVPRSLLNKYRDGLLLTSACEAGELYRAIVDGTSYEELK-KIAAYYDILEI 668

Query: 304 MPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ-LY 361
            P+        +      +R  E N T+++   +L     A  +  +T     +    L 
Sbjct: 669 QPLGNNAYMVRDGKVDSEERIKEFNRTVIKLGEDLHKPVIATGDVHFTEPEDAIYRAVLQ 728

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTL 387
            G              RT  + L+  
Sbjct: 729 AGNGFKDADNQPPLFFRTTQDMLAQF 754


>gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium
           prausnitzii L2-6]
          Length = 1417

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 121/391 (30%), Gaps = 39/391 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F ++D ET G D  ++   +   V V R  E +E  + F            +   +TGIT
Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIV-RNGEVVEEFDTF---VKPGKPITSKITELTGIT 452

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        EAE  +    F       ++G+N   FD  + R    R+  +        
Sbjct: 453 NEMVADAP-SEAEALKAFLDFVD--GRILVGHNAHSFDIRFLRAAAKRSGIEF------- 502

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L + +A+Y    +             +K   +     +    AH A  D  A 
Sbjct: 503 EPTYIDTLTMAQAMYPGLHN-------------YKQGTINKHLELPAYEAHRACEDSAAL 549

Query: 185 LALVWLIREKKPKLFEYLYDYRN-----KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             +  ++ +   +         N       ++ K    +    L+ +       ++   +
Sbjct: 550 GRIFCVMLKDLEEKQVTAVSGINTGLGGNREVLK----KKYYHLIILVRSQMGLKNLYKI 605

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
           ++    +  +K   +  +L    R    L S   A  L+ +  E      +  K      
Sbjct: 606 VSEAHVNYFFKKPRVPRSLLNKYRDGLILTSACEAGELYRAIVEGHSYEELK-KIASYYD 664

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
              + P+        E      +   + N T+++   +L     A  +  +T     +  
Sbjct: 665 VLEVQPLGNNAYMVREGKVESEEVIKDFNRTVIKLGEDLHKPVIATGDVHFTEPEDAIYR 724

Query: 359 Q-LYDGFFADVDRQIMDRILRTAPEQLSTLN 388
             L  G              RT  + L+  +
Sbjct: 725 SVLQAGNGFKDADNQPPLFYRTTEDMLNQFS 755


>gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium
           cf. saccharolyticum K10]
          Length = 1037

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 71/480 (14%), Positives = 145/480 (30%), Gaps = 59/480 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G     +R  +   V+V    + ++    F      +     E   +T I+ 
Sbjct: 198 VVFDIETTGFSPLKNRIIEIGAVKV-ENGKIVDRFSTF---VNPEVPIPFEIEKLTSISD 253

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
              L    +E E   +  +F    +  ++  +N  FD  + R+                 
Sbjct: 254 NMVLGAPKIE-EVLPKFLEF---CSDAVMVAHNASFDMSFIRHNAMI----------QGK 299

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +    +LD +       P+  +          FKL  +A    I   N H A  D  AT 
Sbjct: 300 SFEPTVLDTVSMARFLLPNLNR----------FKLDTVAKELRISLENHHRAVDDAGATA 349

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA- 244
            +     E          D  N+     +  I+ M P  H+  +         L   V+ 
Sbjct: 350 EIFVKFVEMLKSRGIENLDELNEQSRMSVETIRKM-PTNHIIILAKNDVGRINLYRLVSD 408

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPIL 303
            +  Y         S  ++  + L      +        L+G+    I K V       +
Sbjct: 409 SNLVYYAKRPRIPKSQILKYREGLIIGSACEAGELYQALLRGVPEAEINKIVSFYDYLEI 468

Query: 304 MPI-DYCKKEHFERWGIDHKRCLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            P+ +       E+  +  +  L+  N  ++           A  +  +     +V  ++
Sbjct: 469 QPLGNNAFMLRDEKSTVKTEEDLKDLNRKIVELGERFNKPVCATCDVHFLDPEDEVYRRI 528

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                   D            +  + L L  ++  L E  F Y   +    +     +  
Sbjct: 529 IMAGKGFKDC-----------DDQAPLYLRTTEEMLRE--FEYLGSDKAEEVVITNTRKI 575

Query: 421 LEHRKKMLT-------RSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                + ++          I      L+++    + E  G++  + ++  L   L  +I 
Sbjct: 576 AAMC-ERISPVRPDKCPPVIPNSDEMLRNICYNRAHEMYGEDLPKIVVERLERELNSIIS 634


>gi|332670685|ref|YP_004453693.1| DNA polymerase III subunit epsilon [Cellulomonas fimi ATCC 484]
 gi|332339723|gb|AEE46306.1| DNA polymerase III, epsilon subunit [Cellulomonas fimi ATCC 484]
          Length = 620

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 63/201 (31%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   A     +   V+V R  + +   +             P    +TGI
Sbjct: 42  TFVVVDLETTGGTPADCAITEIGAVKV-RGGQVLGEFQTL---VDPGGPVPPYIQVLTGI 97

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      +  F       ++  +N  FD  + +    R  +        
Sbjct: 98  TTSMLVGAPRIE----TVLPSFLEFAGDAVLVAHNAPFDVGFLKAAAARTGHPWP----- 148

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            GN   D + + R                D A + KL  LA          H A +D  A
Sbjct: 149 -GNRVLDTVRLARRA-----------VTRDEAPNHKLSTLAALFHATVTPNHRALSDARA 196

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  +  +   L     +
Sbjct: 197 TVDVLHALLGRLGPLGVTHLE 217


>gi|326692542|ref|ZP_08229547.1| DNA polymerase III, alpha subunit [Leuconostoc argentinum KCTC
           3773]
          Length = 1437

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/384 (11%), Positives = 107/384 (27%), Gaps = 30/384 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV +D ET G     D+  + + V++ +    ++    +       +        +T IT
Sbjct: 419 FVAFDLETTGLSAVTDKIIELSAVKM-QLGNVVDQFSEY---INPGFPLSEFTTELTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E++  +R   +       ++  +N+ FD  +    + R    +       
Sbjct: 475 DSMVANAD-PESDVIQRFRDWV---GDAVLIGHNVTFDIGFMNAAYARYQKPAI------ 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           GN   D L   R +Y                 S++L  +A    I    AH A  D   T
Sbjct: 525 GNPVIDTLPFTRWLY-------------PDYKSYRLGTIAKRFNINLEQAHRAIFDSETT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             + W + ++  + ++     +  + + +    ++  P+     +  A            
Sbjct: 572 GHIAWRLMKEAKERYDLTSHQQLNDHMTEGDAWKHGRPVHATLLVKNAVGLKHLYELVSR 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            +  +   +     S   +  + L               ++      +++        + 
Sbjct: 632 SNIEFFARLPRIPRSVLEQHREGLLVGTGDTGGDVIVTLIEKGYDAALEKAAYYDFIEIQ 691

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR---FKAIYNKPYTSSSQDVDSQLY 361
           P              D  +  + L  +    +  D+                      + 
Sbjct: 692 PTANYAPMIESGLIADTDKLHDILRDMVAIGDELDKPVVVTGDIKYTNPEDRIYRQILIA 751

Query: 362 DGFFADVDRQIMDRILRTAPEQLS 385
                  +R  +  +     ++L 
Sbjct: 752 TQPGNPQNRTTLPELHFKTTQELL 775


>gi|229825431|ref|ZP_04451500.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC
           49176]
 gi|229789994|gb|EEP26108.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC
           49176]
          Length = 223

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 32/190 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + ++D ET G     D+  + + ++V R  + +                   A  + GIT
Sbjct: 17  YTVFDLETTGVSPQTDKVIEISAIKV-RNGQTVGEFSSL---VNPMRGIPYGATRVNGIT 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN---IFYRNFYDSYRWS 121
            +      V E +       F    +  ++G+N   FD  +       F+R F       
Sbjct: 73  DEMVADKPVFE-KVLGDFLDFVE--DDILVGHNIHDFDMKFIHRDCEAFFRMFL------ 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
              GN   D L + R                      +L DLAL   I    AH A  D 
Sbjct: 124 ---GNDYIDTLPIARKC-------------LPQLGHHRLTDLALYYKISINGAHRALNDC 167

Query: 182 YATLALVWLI 191
                +   +
Sbjct: 168 RMNQLVFERL 177


>gi|160902928|ref|YP_001568509.1| DNA polymerase III PolC [Petrotoga mobilis SJ95]
 gi|160360572|gb|ABX32186.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
          Length = 1388

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/470 (14%), Positives = 140/470 (29%), Gaps = 47/470 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G + A++   +   V++ +  + +                       TGIT
Sbjct: 382 FVVFDLETTGLEPAMNEIIEIGAVKI-KNMKIVSKFHRL---VKPRKPVSNFTSNFTGIT 437

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q    +  +E E   +   F       ++  +N  FD  + R    R + + +  ++  
Sbjct: 438 NQMLEVEKPIE-EVLPQFLSFIE---GAVLVAHNAIFDYRFIREWVRRVYNEHFEQTY-- 491

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                              D +          S+ L  +     +     H A  D   T
Sbjct: 492 ------------------IDTVALSKSLLTLKSYGLAKVVEELKLGSFEHHRAHEDANIT 533

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP--LVHVSGMFGASRSNTALIAP 242
             +   + E        +     K  L+K ID + + P     +       ++   L++ 
Sbjct: 534 ALVFLKLIEMAKSQNVEMLSDLEK--LKKFIDFKRIQPNDTTILVKNKTGLKNLYKLVSN 591

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 Y+   I  +    MR    + S               G     I+         
Sbjct: 592 AHVKYFYRVPRILKSELSRMREGLLIGSSGTEDGEIFQTYLRGGSHDEIIEIAKFYDYLE 651

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L P+D    +      I  ++  +    +    N  +    + +  +    +D       
Sbjct: 652 LTPLDALSDKT-----ISEEQLKKIYQDIYNLGNELNMPVVMVSNAHYLDKEDQIFYNAL 706

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                       R LRT  E +      F D    E+  +    N        ++ + ++
Sbjct: 707 KVGEKRKTSSAHRYLRTTDEMIEEAQRIFGD---KEIAEKIVITNTNEI---ADQIEIIK 760

Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
                L   +IE  + +++ L+ +      G+   E + + L   L+ ++
Sbjct: 761 PLSNKLHPPKIENAEVEIEELAKKKAYEIYGNPLPEIVESRLNRELESIV 810


>gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1520

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/401 (13%), Positives = 109/401 (27%), Gaps = 42/401 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + ++++D ET G     D   +   V+V    +  +    F            E   +T 
Sbjct: 481 DTYIVFDIETTGFSSIKDAIIEVGAVKV-TDGKITDRFSTF---VNPKRPIPFEITNLTS 536

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  +    ++      + QF       ++  +N  FD  +                 
Sbjct: 537 ITDEMVMDSPTIDV----VLPQFLEFAGDGVLVAHNAGFDVGFIEQNCRSLGL------- 585

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +     D + + R                   + +KL  +A A  I   N H A  D  
Sbjct: 586 SDEFVYLDTVALARV-------------LLPTLSKYKLNIVAKALNISLENHHRAVDDAE 632

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     E   K         N+   R +  I+ M P  H+  +         L   
Sbjct: 633 ATAEIFVKFTEMLKKDQVGTLKEVNRYGDRNVNAIRKM-PTHHIIILAKNDIGRYNLYQL 691

Query: 243 VAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           ++  H  Y         S      + L      +          G +   + E    +  
Sbjct: 692 ISQSHMTYYARRPRIPKSLLNEHREGLLIGSACEA---------GELYQAVHEKRSAQQI 742

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
             +   Y   E             E +  +    +L++  + I                +
Sbjct: 743 ARLAEFYDYYEIQPVGNNQFMIESERIADVNSIEDLQNINREIVELGEKFGKPVVATCDV 802

Query: 361 YDGFFADVDRQIMDRILR--TAPEQLSTLNLPFSDRRLPEL 399
           +     D   + +    +     ++   L L  +D  L E 
Sbjct: 803 HFLNPDDEVYRRIIMAGKGFDDADRQPPLFLRTTDEMLEEF 843


>gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C150]
 gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C150]
          Length = 1464

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/446 (13%), Positives = 117/446 (26%), Gaps = 34/446 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   IE  + F       Y        +TGI
Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIIEQFDEF---IDPGYPLSAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T               + + +F       ++  +N  FD  +    + RN          
Sbjct: 481 TDNHVKGAKP----LLQVLQEFQVFCQGTVLVAHNATFDVGFMNANYERNQLP------T 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +            +   +L      +          +   +          
Sbjct: 578 TGRLLFIFIKDVFDKHGLTNLEQLNTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     +      + +               L   +   ++         +
Sbjct: 638 LSNVSYFEGVARIPRTVLDEYREGIIVGSACADGEVFDTLLSHGIEKAVEVAKYYDFIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    D     + +  L +  N  D+        +  + +D   +    
Sbjct: 698 MPPAIYAPLIAKDLIKDEATVEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 757

Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418
                   I   I       P  L   +   ++  L +  F  +  A     T ++    
Sbjct: 758 RALGQGAMINRPIGKGENAKPAPLPEAHFRTTNEMLDDFAFLGKELAYEVVVTNTQAMAD 817

Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442
                E  KK L    I+  + ++  
Sbjct: 818 QIEEVEVVKKDLYTPFIDRAEEQVAE 843


>gi|170016990|ref|YP_001727909.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
 gi|169803847|gb|ACA82465.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
           citreum KM20]
          Length = 1437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/479 (11%), Positives = 126/479 (26%), Gaps = 57/479 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V +D ET G     D+  + + V++ +    I+    +       +        +T IT
Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKM-QMGNVIDKFSEY---INPGFPLSDFTTELTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E      + +F +     I+  +N+ FD  +    + R            
Sbjct: 475 DAMVANADTEE----SIVSRFRAWVRDAILVGHNVTFDIGFMNAAYSRYNQPDI------ 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L   R +Y                 S++L  +A    I    AH A  D   T
Sbjct: 525 SNPIIDTLPFTRWLY-------------PDYKSYRLGTIAKRFNINLEQAHRAIFDSETT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             + W + ++    +      +  + + +    ++  P+     +               
Sbjct: 572 GHIAWRLIKEANTTYALTDHEQLNDHMTEGDAWKHGRPVHATLLVQNTVGLKNLYKLVSR 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            +  +   V     S   ++ + L               ++      +++        + 
Sbjct: 632 SNIEFFARVPRIPRSVLNQLREGLLIGTGDTSGDVIMTLIEKGRVAALQKAKYYDFIEIQ 691

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P              +  +    L  +    +  D+   +      ++            
Sbjct: 692 PTANYAPMIESGLIANESQLQSILKDMVSIGDELDKTVVVTGDIKYTNP----EDRIYRQ 747

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHR 424
                +    +     PE          D       F         TL+ +   D     
Sbjct: 748 ILIGTQPGNPQNRTALPENYFRTTQQLLDD----FAFM------GDTLARQLVIDNTHKI 797

Query: 425 KKML----------TRSRIEEYKNKL-----QSLSGEYKGDEGKEGLINALYEYLQWVI 468
              L              I    ++L     ++ +  + GD   E +   + + L+ +I
Sbjct: 798 ANCLETITPLKSGSYPPNIPTAGDELTRRTFEN-AKRWYGDPLPEVIQARIDQELEAII 855


>gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
           15272]
 gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
           15272]
          Length = 569

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 26/202 (12%)

Query: 4   HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F + D ET G       R  +   V V R  E +   +        D         +TG
Sbjct: 31  TFCVVDLETTGGSPQKGSRITEIGAVLV-RGGEVLGEFQTL---VNPDESIPAFITVLTG 86

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT Q  ++        +  +  F       ++  +N  FD  + R+              
Sbjct: 87  ITDQMVVQAPR----IAEALPSFLEFARGSVLVAHNAPFDTGFLRHA---------AAEL 133

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R+++LD                       + KL  LA   G      H A +D  
Sbjct: 134 QIPWPRFEVLDTALLARRVL--------LAGEVRNCKLGTLAAHVGATTTPNHRALSDAR 185

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT+ ++  + E+   L  +  +
Sbjct: 186 ATVDVLHHLFERLGPLGVHSLE 207


>gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R]
 gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316]
 gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 18RS21]
 gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 2603V/R]
 gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae
           NEM316]
 gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 18RS21]
          Length = 1468

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   A +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSAFTTELTGI 484

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T               + + +F +     ++  +N  FD  +    + R+          
Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581

Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++    +    L +   K           +             ++   L++
Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     S      + L               L   +   +         
Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355
            +MP    +         D     + +  L +      +  L                + 
Sbjct: 700 EVMPPAIYRPLVVRDLIKDEVGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411
           +   L  G   +      +         L   +   ++  L E  F  +  A      +T
Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            +  ++ + +E  K  L    ++  + ++  L
Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848


>gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SS3/4]
          Length = 1376

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/390 (15%), Positives = 110/390 (28%), Gaps = 34/390 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     ++  +   V+V R  E I+  + F      +     +   +TGI 
Sbjct: 415 YVVFDIETTGFSPIKNKIIEIGAVKV-RNGEIIDRMDEF---VNPEVPIPFDIERLTGIN 470

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +          + + +F        +  +N  FD  +  +                
Sbjct: 471 DAMVMGADT----VDKVLPRFLEFVGDAALVAHNASFDVSFISHNAGLLGLSFDPT---- 522

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +LD +    A  P+  +          FKL  +A A G+   N H A  D  AT
Sbjct: 523 ------VLDTVTLARALLPNLNR----------FKLDTVAKALGVSLENHHRAVDDAEAT 566

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +     E   K  +     + +       +     P  HV  +         L   V+
Sbjct: 567 AGIFLKFVEMLKKQHDMTNLDQLEEFSHVSDETIMKMPTYHVIILAKNDLGRVNLYRLVS 626

Query: 245 W-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPI 302
           W H +Y         S   +  + L      +        L+G+    + K V       
Sbjct: 627 WSHLKYFSRRPRIPKSVLNQYREGLIIGSACEAGELYQAILRGVPDAELAKLVKFYDYLE 686

Query: 303 LMPIDYCKKEHFERWGIDH---KRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           + P+        +              N  ++           A  +  +      +  +
Sbjct: 687 IQPLGNDMFMLRDEKSTVRTVDDLMDINRKIVSLGEQFNKPVCATCDVHFMDPDDAIYRK 746

Query: 360 LYDGFFADVDRQ-IMDRILRTAPEQLSTLN 388
           +        D        LRT  E L+   
Sbjct: 747 ILMSGMGFKDADEQAPLFLRTTEEMLAEFE 776


>gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 1406

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/480 (14%), Positives = 138/480 (28%), Gaps = 55/480 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + F ++D ET G     D   +   V++ ++ + I++ E F                +TG
Sbjct: 391 DEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKLTG 446

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I          +E E   +  +F    N+ ++ +N      +        N         
Sbjct: 447 IDESMVKDAPSIE-EILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLN------- 496

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N+  D L++ R                    ++KL  LA    ++  + H A  D  
Sbjct: 497 -VNNTVLDTLELSR-------------HLYKDLKNYKLDTLAEHLQVKLEHHHRAVDDAR 542

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     ++  +L        N       +DI+ + P+ HV+ +    R    L   
Sbjct: 543 ATAEIFIKTIDRLKELGVKKVKDINDILRESEVDIKKL-PVYHVTILVKDQRGLRNLYEI 601

Query: 243 VA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
           ++  +  Y         S  + + + L      ++       L  L         L    
Sbjct: 602 ISKSNLEYFHRTPRIPKSLLISMREGLIIGSACEQGEVFRAILSNLEEK-----KLENII 656

Query: 302 ILMPIDYCKKEHFERWGIDHKRCL--ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
                   +      + I+       E L  + ++  L  +                   
Sbjct: 657 SFYDYLEVQPVGNNEFLIEKGEIKSVEELKEINRRIYLLGKKYNKLVVATGDVHFLDPWD 716

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
                     +           ++   L    +D  L E  F Y        +       
Sbjct: 717 DIYRKILMAGKGYK------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNPNK 768

Query: 420 WLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             +  +++  +        IE  + +L+ L    + E  GD   E + N L   L  +I 
Sbjct: 769 IADLIEEVKPIPDGTFPPVIEGAEEELRKLTLDKAHEIYGDPLPEIVQNRLDRELNSIIN 828


>gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
 gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
          Length = 1437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 132/476 (27%), Gaps = 50/476 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G   A D+  + + V++  +   I     F       +      V +T IT
Sbjct: 421 YVVFDVETTGLSAAYDKVIELSAVKM-VKGNVIAEFSEF---IDPGFSLSQTTVDLTSIT 476

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E E      +F       I+  +N+ FD  +    + R+           
Sbjct: 477 DDMVRGS-KSEKEVFTAFREF---YGDAILVGHNVTFDMGFMNEGYERHGMG------SI 526

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L + R +Y                 S++L  LA   G+     H A  D   T
Sbjct: 527 TNPVIDTLTLARFLY-------------PNMRSYRLNTLAKHFGVLLEQHHRAIFDSETT 573

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L  +  E+  + +   +  +  + +      ++  P   V  +   +           
Sbjct: 574 GHLNRIFLEEARESYGITHADQLNDHMTDNDAWRHGRPNHAVVLVQNQTGVKNLYKLISE 633

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            +  Y         S   +    L               ++        +        + 
Sbjct: 634 SNIHYLYRTPRVPRSVLNKYRDGLLLGTGDSSGEFWEALMQKGYAAAKTKAKYYDYIEIQ 693

Query: 305 PIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           P      +       D  R  E  +  ++    L        +  Y +        +Y  
Sbjct: 694 PSANYLPQIEGELIKDEARLRELMMQAVKIGDELNKPVVVTGDVHYLNPEDG----IYRK 749

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPHTLSEKE 416
                          + P+    L+   +   L       PEL  +    N   T    +
Sbjct: 750 ILISSQGGANPLNRHSLPD----LHFRTTQEVLDDFSWMKPELAKKLVIDN---THVVAD 802

Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGE----YKGDEGKEGLINALYEYLQWVI 468
             D +E  K       +    ++++  S E      G+   E +   + + L  +I
Sbjct: 803 MIDDVEAIKSGNYPPNMPTANDEIRQKSYETAYRMYGNPLPEIVEARIEQELNSII 858


>gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
 gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
          Length = 567

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 65/201 (32%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G         +   V+V R  E +                 P+ V +TGI
Sbjct: 21  TFVVFDLETTGAPPGPSGITEIGAVKV-RGGEVLGEFATL---VNPGAPIPPQIVSLTGI 76

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E E      +F       ++  +N  FD  + R     + Y   + +  
Sbjct: 77  TQAMVYDAPPIE-EVLPAFLEFI---GGAVLVAHNSGFDTSHMRAACEGHGYVWPKAT-- 130

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++  +R                D    + L  LAL  G      H A  D  A
Sbjct: 131 -------VVCTVRLARRV--------VPRDEVGRYNLTALALLFGARTRPTHRALDDARA 175

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   L  +  +
Sbjct: 176 TVDVLHGLLERVGNLGVHSLE 196


>gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SSC/2]
          Length = 1470

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/483 (14%), Positives = 133/483 (27%), Gaps = 56/483 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + +V++D ET G +   DR  +   VRV  + E  E+   F      +     +   +
Sbjct: 440 LMDSYVVFDIETTGFNSVNDRIIEIGAVRV-VEGEIKETFSEF---VNPERPIPYKITQL 495

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT       G +E      + QF       ++  +N  FD  + R    R        
Sbjct: 496 TTITDDMVKDAGTIE----EILPQFLKFCAGSVLVAHNAGFDTGFIRENAKRLNLP---- 547

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                ++  D L + R                     F L ++     I     H A  D
Sbjct: 548 ---YDHTVVDTLGLARC-------------LMGHLGKFTLDNICKHLNIILETHHRAVDD 591

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
             AT  +         +      D  N   N    LI    M   + +        +   
Sbjct: 592 ATATGKIFVEFISMLKEKDITDLDQVNEFANDNVDLIKKGRMYHGIILVKNNTGRVNLNR 651

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS-HDELKGLVPVPIKEV-- 295
           L++    +   +   +  +L    R    + S   A  L+ +  DE        I     
Sbjct: 652 LVSESHLNYFNRRPRMPKSLINKYRDGLIIGSACEAGELYQALLDERSDETIANIVSFYD 711

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           +L   P+         E  E           N  ++           A  +  + +    
Sbjct: 712 YLEIQPVGNNEFMIGSERVENVNSIEDIQKFNQKIVDLGEQFHKPVVATCDVHFLNPDDA 771

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           +   +                     +Q + L    +   L E    Y        +   
Sbjct: 772 IYRSILLAGKGFK-----------DADQQAPLYFRTTQEMLDEFA--YLGSEKAKEVVIT 818

Query: 416 EKQDWLEHRKKM------LTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQ 465
                 +  + +           I +    L+ +    + E  GD+  E + + L + L 
Sbjct: 819 NTNKINDMIENISPIHPDKCPPVIPDSDKTLREICYNRAHEIYGDDLPERVTSRLEKELN 878

Query: 466 WVI 468
            +I
Sbjct: 879 SII 881


>gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
           824]
 gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
           824]
 gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA
           2018]
          Length = 1452

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/481 (12%), Positives = 146/481 (30%), Gaps = 58/481 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G     ++  +   ++     + I+   +F      +       V +T I
Sbjct: 427 TYCVLDLETTGFSPKTEKITEIGIMKY-ENGKVIDKFSLF---VNPEKPIPARVVEVTNI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++    +   +        ++  +N  FD  + ++      Y+       
Sbjct: 483 TDDMVKNAETID----KVFPKMLEFIKGSVLVAHNASFDIGFLKHNAKVLGYEF------ 532

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + +A++                 S+KL  +A   GI+   AH A  DV  
Sbjct: 533 -DFTYLDTLSLAQAVF-------------PQYKSYKLGRIAKNLGIKVEVAHRALDDVDT 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNTA 238
           T+ +  ++ E   +      +  +   + +    +    L     +  A      ++   
Sbjct: 579 TVKVFKVMLEILKERGAKTLEDVDIYSVDEESKKEEYKKLRTYHAIILAKNYVGLKNLYK 638

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
           L++    +  YK   I  +L         L S      LF +   L              
Sbjct: 639 LVSYSHLNYFYKRPRILKSLYKKYSEGLILGSACSEGELFQA-ILLGKPDEEVEDIARDY 697

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
               + P+             + +   + N  ++     L     A  +  +     ++ 
Sbjct: 698 DYLEIQPLGNDDYLIRNGQVPNKEAIKDINRKIIELGEKLNKPVVATGDVHFIDPEDEIY 757

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
            ++ +                   +  + L L  ++  L E    Y  R   + +     
Sbjct: 758 RRILEAGQGFK-----------DADNQAPLYLRTTEEMLQEFS--YLGREKAYEVVVTNT 804

Query: 418 QDWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
               +  +++  ++  +    I+  +  ++ +    + E  GD   E +   L + L+ +
Sbjct: 805 NKISDMCEQISPISPEKCPPHIDGCEQTIKDIAYEKAHELYGDPLPEIVQQRLDKELESI 864

Query: 468 I 468
           I
Sbjct: 865 I 865


>gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1444

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/399 (12%), Positives = 110/399 (27%), Gaps = 30/399 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V +D ET G     D   +   V++ +   ++   + F   P        +   +T I
Sbjct: 403 TYVSFDLETTGLSQIDDYITEIGAVKI-KNGLEVGRLQTFIKSPKP---ISKKITELTSI 458

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       +E EF  R+ +FF      ++  +N RFD         R         W 
Sbjct: 459 TNEDIRNAPTIE-EFMPRLMEFF---GDDLLIAHNGRFDIGMLDKALERMGKSPISNPW- 513

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181
                 D L + R                    S++L  +        +   AH A  D 
Sbjct: 514 -----IDTLPLSR-------------RLIPLQRSYRLGAVCRFYHIPYDTEAAHRADYDA 555

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
                   ++ +   K      D  N  ++ +         +  ++      ++   L++
Sbjct: 556 EVLSHSFNVMLQDLIKKGFKTIDEVNDIEIEESYKHAFPYHMCVLAKTPEGLKNMFRLVS 615

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF-TSHDELKGLVPVPIKEVHLNKC 300
                  ++   I  +     R      S  +  ++F  +    +  +   IK     + 
Sbjct: 616 IANTKYFHQCDRIPRSELEFYREGLLFGSGCVNSKVFEIASTRDEEELREEIKFYDYIEI 675

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             L    Y           D +R  + +  + ++           +          +  +
Sbjct: 676 QPLEDAMYLVDRGKYESIDDIERIYKRIIKIAKEEKKLICATGDVHFLDKRDKVYREVFI 735

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
            +       +     +          + L  +D  L   
Sbjct: 736 TNSKIQINGKPHPLLVRNNPRALTPDVYLRTTDEMLECF 774


>gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
 gi|167711660|gb|EDS22239.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
          Length = 1473

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/483 (14%), Positives = 133/483 (27%), Gaps = 56/483 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + +V++D ET G +   DR  +   VRV  + E  E+   F      +     +   +
Sbjct: 443 LMDSYVVFDIETTGFNSVNDRIIEIGAVRV-VEGEIKETFSEF---VNPERPIPYKITQL 498

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT       G +E      + QF       ++  +N  FD  + R    R        
Sbjct: 499 TTITDDMVKDAGTIE----EILPQFLKFCAGSVLVAHNAGFDTGFIRENAKRLNLP---- 550

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                ++  D L + R                     F L ++     I     H A  D
Sbjct: 551 ---YDHTVVDTLGLARC-------------LMGHLGKFTLDNICKHLNIILETHHRAVDD 594

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
             AT  +         +      D  N   N    LI    M   + +        +   
Sbjct: 595 ATATGKIFVEFISMLKEKDITDLDQVNEFANDNVDLIKKGRMYHGIILVKNNTGRVNLNR 654

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS-HDELKGLVPVPIKEV-- 295
           L++    +   +   +  +L    R    + S   A  L+ +  DE        I     
Sbjct: 655 LVSESHLNYFNRRPRMPKSLINKYRDGLIIGSACEAGELYQALLDERSDETIANIVSFYD 714

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           +L   P+         E  E           N  ++           A  +  + +    
Sbjct: 715 YLEIQPVGNNEFMIGSERVENVNSIEDIQKFNQKIVDLGEQFHKPVVATCDVHFLNPDDA 774

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           +   +                     +Q + L    +   L E    Y        +   
Sbjct: 775 IYRSILLAGKGFK-----------DADQQAPLYFRTTQEMLDEFA--YLGSEKAKEVVIT 821

Query: 416 EKQDWLEHRKKM------LTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQ 465
                 +  + +           I +    L+ +    + E  GD+  E + + L + L 
Sbjct: 822 NTNKINDMIENISPIHPDKCPPVIPDSDKTLREICYNRAHEIYGDDLPERVTSRLEKELN 881

Query: 466 WVI 468
            +I
Sbjct: 882 SII 884


>gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM
           43017]
 gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Saccharomonospora viridis DSM 43017]
          Length = 570

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V R  E +                 P+ V +TGI
Sbjct: 16  TFVVVDLETTGVTPDGAGITEIGAVKV-RGGEVVGEFATL---VDPGVPIPPQIVALTGI 71

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TP        +E    + +  F    +  ++  +N  FD  + +     + Y+  + +  
Sbjct: 72  TPAMVRSAPRIE----QVLPTFLEFVSGAVLVAHNAGFDVSFLKAACQTHGYEWPKPTV- 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                             +    +           +L  LA   G      H A  D  A
Sbjct: 127 ----------------VCTLKLARRVLGRQETRGHRLSTLASLFGARSTPKHRALDDAKA 170

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   L     +
Sbjct: 171 TVDVLHGLLERVGPLGVQSLE 191


>gi|225374652|ref|ZP_03751873.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
           16841]
 gi|225213511|gb|EEG95865.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
           16841]
          Length = 228

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 78/246 (31%), Gaps = 36/246 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D   + + V+V R  + +E                  A  +  I+
Sbjct: 17  YVLFDLETTGTSCIYDEVIEISAVKV-RSGKVVEEFSQL---VNPKRPIPYAASMVNHIS 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            +    +     +F + + +F +      ++G+N   FD  +      R F         
Sbjct: 73  DEMVANEP----DFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTN--- 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +D +R                      +L DLA   GI    AH A  D   
Sbjct: 126 ------DYVDTLRVAKLCF----------PEWRHRRLSDLAEHYGISTRGAHRALTDCKM 169

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              +   + ++  K+         K Q ++ I  +   P+   +G FG       +  P 
Sbjct: 170 NQQVFEYLAKELEKMPAA------KKQSKEKICPECGLPMKKRNGRFGEFWGC--IGYPD 221

Query: 244 AWHPRY 249
             H   
Sbjct: 222 CRHTEN 227


>gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 686

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 84/265 (31%), Gaps = 30/265 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G  V  ++  + AGV++ +  ++I     F                +T I
Sbjct: 420 TYVVFDIETTGLSVINNKIIEIAGVKM-KDGKEIGRYTTF---IDPHEKIPYNIQQLTNI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          + +  + +F       ++  +N RFD  + +                
Sbjct: 476 TDEMVQGAP----DIAEELPKFVEFVGDAVLVAHNARFDMGFIQANLKNIGMPEL----- 526

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D L++ R                    + +L  LA    +   N H A  D  A
Sbjct: 527 -PNPSLDTLELARL-------------LFPSLKNHRLNTLADKFKVSLENHHRAIDDTVA 572

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
            + ++  + ++  +        R  + + K +           +      ++   L++  
Sbjct: 573 LMHILNHLLQEAEEQNLTQL-NRLNDHVGKDLRNTRPFHCCIYAKDMVGKKNLYRLVS-- 629

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDL 268
             H  Y   V     S  + + + L
Sbjct: 630 LSHTEYFHRVACIPKSKLIELREGL 654


>gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247]
 gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM
           43247]
          Length = 595

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V+ D ET G D A DR  +   V++ R  E +            +    P+ V +TGI
Sbjct: 37  TLVVVDLETTGSDPAGDRITEIGAVKI-RGGEVLGEFATL---VDPERSIPPQIVTLTGI 92

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      +  F       I+  +N RFD  + R    R   D       
Sbjct: 93  THAMVSAAPRIE----EVLPAFIEFARGSILVAHNARFDMGFLRRNAQRLHLDFPF---- 144

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                         +   +    +     + A + +L  LA    +     H A  D  A
Sbjct: 145 -------------PLSLCTVTMARRILHREEAPTVRLSALADLFDVSVRPTHRALDDARA 191

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ +   + E+      +   
Sbjct: 192 TVEVFHHLLERVGNQGVHSIR 212


>gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 264

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 56/189 (29%), Gaps = 26/189 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +++V++D ET G     D   + + ++V       E  E F             A  + G
Sbjct: 56  DNYVVFDLETTGISAVKDDIIEISALKVKNH----EQVETFSRLVNPRRPIPAGATKVNG 111

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +    +  +E         F       +IG+N   FD  +           +     
Sbjct: 112 ITDEMVQSEPGLEF-ILPEFLDFID--GEILIGHNIQSFDLLFLNRAADEVCRKAVLN-- 166

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D +D +    A             G +  +L DLA    I    AH A  D  
Sbjct: 167 -------DFIDTLFMARALL----------PGLSRHRLTDLADYFKISSEGAHRAFNDCV 209

Query: 183 ATLALVWLI 191
                   +
Sbjct: 210 MNQICYEHM 218


>gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 1470

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/474 (12%), Positives = 125/474 (26%), Gaps = 35/474 (7%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    +V++D ET G     +   Q A  ++  +   +E  + F       +        
Sbjct: 425 MNEATYVVFDVETTGLSAINNDLIQIAASKM-HKGNIVEQFDEF---IDPGHPLSQFTTD 480

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT Q             + + +F S     ++  +N  FD  +    + R+      
Sbjct: 481 LTGITDQHVKGAKP----ILQVLQEFQSFCQDTVLVAHNATFDVGFMNANYERHDLP--- 533

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D L+  R +Y                    L  L     +   + H A  
Sbjct: 534 ---KITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANY 577

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           D  AT  L+++  ++  +            ++      +          +          
Sbjct: 578 DAEATGRLLFIFLKEAKEKHGVNNLLDLNTKIVDNNSYKKARVKHATIYVLNQKGLKNLF 637

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
                 +  Y   V     +   +    L               L   V   ++      
Sbjct: 638 KLVSLSNVTYFAGVARIPRTILDQYRDGLLLGTACSDGEVFDTVLSKGVEDAVEVAKYYD 697

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
              +MP    +         D     + +  L+     L     A  +  Y     ++  
Sbjct: 698 FIEVMPPALYEPLLARELIKDEAGIQQIIKNLIEVGRRLDKPVLATGDVHYLEPEDEIYR 757

Query: 359 QLYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSE 414
           ++                      P  L   +   ++  L E  F     AR+       
Sbjct: 758 EIIVRSLGQGAMINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLARDIVIKNPN 817

Query: 415 KEKQDWL--EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
           +  + +   E  K  L    IE  + K+  ++ E   +     L + +   ++ 
Sbjct: 818 EMVERFEDVEVVKTDLYTPFIENSEEKVAEMTYEKAFEIYGNPLPDIIDLRIEK 871


>gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
 gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
          Length = 1464

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/401 (11%), Positives = 100/401 (24%), Gaps = 30/401 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 425 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTDLTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +    F       ++  +N  FD  +    + R+          
Sbjct: 481 TDEHVKNA-KPLEQVLQEFQDF---CQDTVLVAHNATFDVGFMNVNYERHGLP------R 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 531 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++      +        +    L      +          +   +          
Sbjct: 578 TGRLLFIFINDAAEKRGVTNLQKLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 638 LSNTKYFEGVPRIPRTVLDAHREGLILGTACSEGEVFDAVVSQGVDAAVEVAKYYDFIEI 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  +  Y    +++  ++  
Sbjct: 698 MPPAIYAPLIAKEQVKDVEELHTIIKNLIEVGNRLDKPVLATGDVHYIEPEEEIYREIIV 757

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
                               P  L   +   ++  L E  F
Sbjct: 758 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAF 798


>gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
 gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
          Length = 1456

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/401 (11%), Positives = 100/401 (24%), Gaps = 30/401 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 417 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNVIAEFDEF---INPGHPLSAFTTDLTGI 472

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +    F       ++  +N  FD  +    + R+          
Sbjct: 473 TDEHVKNA-KPLEQVLQEFQDF---CQDTVLVAHNATFDVGFMNVNYERHGLP------R 522

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 523 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 569

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++      +        +    L      +          +   +          
Sbjct: 570 TGRLLFIFINDAAEKRGVTNLQKLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 629

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 630 LSNTKYFEGVPRIPRTVLDAHREGLILGTACSEGEVFDAVVSQGVDAAVEVAKYYDFIEI 689

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP         +    D +     +  L+     L     A  +  Y    +++  ++  
Sbjct: 690 MPPAIYAPLIAKEQVKDVEELHTIIKNLIEVGNRLDKPVLATGDVHYIEPEEEIYREIIV 749

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
                               P  L   +   ++  L E  F
Sbjct: 750 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAF 790


>gi|296110428|ref|YP_003620809.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
           kimchii IMSNU 11154]
 gi|295831959|gb|ADG39840.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
           kimchii IMSNU 11154]
          Length = 1437

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/378 (12%), Positives = 99/378 (26%), Gaps = 31/378 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V +D ET G     D+  + + V++ +    IE    +       +        +T IT
Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKM-QLGNVIEKFSEY---INPGFPLSDFTTKLTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E      I +F       ++  +N+ FD  +    + R            
Sbjct: 475 DTMVAHADTEEN----IITRFRKWIGDAVLIGHNVTFDIGFMNAAYAR------YNQTVI 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L   R +Y                 S++L  LA    I    AH A  D   T
Sbjct: 525 KNPVIDTLPFTRWLY-------------PDYKSYRLGTLAKRFNINLEQAHRAIFDAETT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             + W + ++    +E     +  + +      ++  P+     +  A            
Sbjct: 572 GHIAWRLIKEVNTRYELTRHNQLNDYMTDGDAWKHGRPVHATLLVQNAVGLKNLYKLVSR 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            +  +   V     S   +  + L               ++      +K+        + 
Sbjct: 632 SNIDFFARVPRIPRSILNQYREGLIIGTGDTSGDVIMTLIEKGREEALKKAKYYDYIEIQ 691

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P              +  +  + L  +       D+   +      ++            
Sbjct: 692 PTANYAPMIESELVANETKLHDILKEMVSIGETLDKPVVVTGDVKYTNP----EDKIYRD 747

Query: 365 FADVDRQIMDRILRTAPE 382
                +    +     PE
Sbjct: 748 ILIATQPGNPQNRTALPE 765


>gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 1538

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/480 (14%), Positives = 145/480 (30%), Gaps = 59/480 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G     ++  +   V+V    + ++    F      +     E   +T I+ 
Sbjct: 514 VVFDIETTGFSPLKNKIIEIGAVKV-ENGKIVDRFSTF---VNPEVPIPFEIEKLTSISD 569

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
              L    +E E   +  +F    +  ++  +N  FD  + R+                 
Sbjct: 570 NMVLGAPKIE-EVLPKFLEF---CSDAVMVAHNASFDMSFIRHNAMI----------QGK 615

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +    +LD +       P+  +          FKL  +A    I   N H A  D  AT 
Sbjct: 616 SFEPTVLDTVSMARFLLPNLNR----------FKLDTVAKELRISLENHHRAVDDAGATA 665

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA- 244
            +     E          D  N+     +  I+ M P  H+  +         L   V+ 
Sbjct: 666 EIFVKFVEMLKSRGIENLDELNEQSRMSVETIRKM-PTNHIIILAKNDVGRINLYRLVSD 724

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKCPIL 303
            +  Y         S  ++  + L      +        L+G+    I K V       +
Sbjct: 725 SNLVYYAKRPRIPKSQILKYREGLIIGSACEAGELYQALLRGVPEAEINKIVSFYDYLEI 784

Query: 304 MPI-DYCKKEHFERWGIDHKRCLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            P+ +       E+  +  +  L+  N  ++           A  +  +     +V  ++
Sbjct: 785 QPLGNNAFMLRDEKSTVKTEEDLKDLNRKIVELGERFNKPVCATCDVHFLDPEDEVYRRI 844

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                   D            +  + L L  ++  L E  F Y   +    +     +  
Sbjct: 845 IMAGKGFKDC-----------DDQAPLYLRTTEEMLRE--FEYLGSDKAEEVVITNTRKI 891

Query: 421 LEHRKKMLT-------RSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                + ++          I      L+++    + E  G++  + ++  L   L  +I 
Sbjct: 892 AAMC-ERISPVRPDKCPPVIPNSDEMLRNICYNRAHEMYGEDLPKIVVERLERELNSIIS 950


>gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family
           [Mycobacterium sp. Spyr1]
 gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Mycobacterium sp. Spyr1]
          Length = 617

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 64/204 (31%), Gaps = 28/204 (13%)

Query: 4   HFVIYDYETFGRDVALDR---PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            FV+ D ET G   + DR     +   V+V R  E +                 P+ V +
Sbjct: 21  TFVVVDLETTGGRASGDRHDAITEIGAVKV-RGGEVLGEFATL---VDPGRAIPPQIVAL 76

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT         +E      +  F       ++  +N  FD  + R    RN       
Sbjct: 77  TGITSAMVYDAPRIE----SVLPSFLEFCRGAVLVAHNAGFDMGFLRAAAERNQVPWP-- 130

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      + + R +              D A S KL  LA   G      H A  D
Sbjct: 131 ----KPPVLCTVALARRV-----------LTRDEAPSVKLSALARLFGASTTPTHRALDD 175

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT+ ++  + E+      + Y 
Sbjct: 176 ARATVDVLHALIERVGNQGVHTYA 199


>gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK]
 gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
          Length = 617

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 64/204 (31%), Gaps = 28/204 (13%)

Query: 4   HFVIYDYETFGRDVALDR---PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            FV+ D ET G   + DR     +   V+V R  E +                 P+ V +
Sbjct: 21  TFVVVDLETTGGRASGDRHDAITEIGAVKV-RGGEVLGEFATL---VDPGRAIPPQIVAL 76

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT         +E      +  F       ++  +N  FD  + R    RN       
Sbjct: 77  TGITSAMVYDAPRIE----SVLPSFLEFCRGAVLVAHNAGFDMGFLRAAAERNQVPWP-- 130

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      + + R +              D A S KL  LA   G      H A  D
Sbjct: 131 ----KPPVLCTVALARRV-----------LTRDEAPSVKLSALARLFGASTTPTHRALDD 175

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT+ ++  + E+      + Y 
Sbjct: 176 ARATVDVLHALIERVGNQGVHTYA 199


>gi|15835150|ref|NP_296909.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270285322|ref|ZP_06194716.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270289339|ref|ZP_06195641.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
 gi|301336719|ref|ZP_07224921.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
 gi|8163241|gb|AAF73567.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
           Nigg]
          Length = 232

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 69/234 (29%), Gaps = 30/234 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               + YD ET G  +  DR  + A           ES +        +     EA  I 
Sbjct: 1   MPDLIFYDTETTGTQIDKDRIVEIAAY----NGTTGESFQTL---VNPEIPIPAEATKIH 53

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +         E  ++   F    N  ++ +NN  FD         R+        
Sbjct: 54  GITTSEVANAPK-FPEAYQQFSDFCGTDN-ILVAHNNNAFDYPLLLRECRRHGLPE---- 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 +   +D ++    +  D               LQ L    G E  NAH A  DV
Sbjct: 108 -----PQLRTIDSLKWAKKYRTDL----------PQHSLQYLRQVYGFEENNAHRALDDV 152

Query: 182 YATLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                +  ++       +++  L +  +    +         PL  V   + A 
Sbjct: 153 ITLHRVFSVLVGDLSPDQIYNLLNETCHPRVFKMPFGKYKGKPLSEVPSSYIAW 206


>gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a]
 gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a]
          Length = 580

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 63/201 (31%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   A     +   VRV R  E +        +P+      P    ITGI
Sbjct: 20  TFVVVDLETTGTSAATSEITEIGAVRV-RGGEVLAEMSTL-VRPSAG--IPPMVSVITGI 75

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          EAE      +F       ++  +N  FD  + R    R  Y    W   
Sbjct: 76  TDAMVATAPA-EAEVVPTFLEF---ARGAVLVAHNAPFDLGFLRAAAQRCGYPPPAWEH- 130

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   LD +R                D A   +L  LA          H A AD  A
Sbjct: 131 --------LDTLRIARRL--------VSRDEAPDCRLASLARLFRSSTEPCHRALADARA 174

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+         +
Sbjct: 175 TVDVLHGLFERLGNAGVRTLE 195


>gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3]
 gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3]
          Length = 584

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 60/201 (29%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G     D   +   VRV R    +                 P    +TGI
Sbjct: 29  TFVVFDLETTGTSPGRDEITEIGAVRV-RGGRILAEMATL---VRPGVGIPPMVSVLTGI 84

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              ++ +  F       ++  +N  FD  + R       Y    W + 
Sbjct: 85  TDVMVATAPP----VTQVLPTFLEFARGAVLVAHNAPFDLGFLRAAVELCGYPVPVWEY- 139

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R +              D +   +L  LA          H A AD  A
Sbjct: 140 -----LDTLRIARRV-----------VTRDESPDCRLTSLASLFRSPVEPRHRALADARA 183

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+         +
Sbjct: 184 TVDVLHGLFERLGNAGVTTLE 204


>gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 572

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 64/201 (31%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   A D   +   V+V R  E +   +        +    P  V ITGI
Sbjct: 24  TFVVVDLETTGGSNAQDAVTEIGAVKV-RGGEVVGEFQTL---VDPERDIPPSVVTITGI 79

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      +  F       ++  +N  FD  + R    R      +    
Sbjct: 80  TEAMVRDAPRLD----SVLPAFLEFCRGSVLVAHNAPFDTGFLRAGCERLGLRWPKPK-- 133

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++  +R                D   +++L  LA   G      H A  D  A
Sbjct: 134 -------VVCTVRLARRVL--------TRDETPNYRLGTLAGVLGARTEPVHRALDDARA 178

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   +     +
Sbjct: 179 TVDVLHALLERLGPIGVRTLE 199


>gi|229818165|ref|ZP_04448447.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
           20098]
 gi|229784416|gb|EEP20530.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
           20098]
          Length = 186

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 55/191 (28%), Gaps = 26/191 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T+ +V+ D ET G   A DR  +   VRV                             +T
Sbjct: 16  TDDYVVVDLETTGISPARDRIIEIGAVRV-EHGTVTAEYSKL---VNPGRPVGGFITGLT 71

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +       +EA             +T  I  +N  FD  +  +   R         
Sbjct: 72  GISDEMVGNASPIEA-VLPDFLAHLRPSDT--IVAHNANFDINFLYDNCMRTLGKP---- 124

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +D +D +R   A                  +L DL    GI     H   +D 
Sbjct: 125 -----FSYDFIDTLRLSRALF----------PQERQHRLVDLIQRFGIADEEEHRGLSDA 169

Query: 182 YATLALVWLIR 192
             T+     ++
Sbjct: 170 LQTVECYERMK 180


>gi|326791606|ref|YP_004309427.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326542370|gb|ADZ84229.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM
           5427]
          Length = 1468

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/391 (12%), Positives = 112/391 (28%), Gaps = 34/391 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +   +V++D ET G    ++R  +   V+V    + +++   F            +   +
Sbjct: 438 LMESYVVFDLETTGFSPKMNRIIEIGAVKV-VGGQIVDTFSEF---VNPKVPIPYQIEKL 493

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  +  +    +E      + QF +    C++  +N  FD  +               
Sbjct: 494 TGINDRMVMEAETIEV----LLPQFLAFCEGCVMVAHNADFDMSFIEANAKEQGL----- 544

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                 +  D + + R                    +FKL ++A    I   N H A  D
Sbjct: 545 --AADFTVMDTVALARI-------------LMPHLGNFKLNNVAKHLDISLENHHRAVDD 589

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN---T 237
             AT  +     E   +      D  N + +    D     P  H   +           
Sbjct: 590 ATATGEIFVRFIEMLQEKGVTTLDAIN-DMVEISPDYIKKLPTYHGVILVKNEIGRINLN 648

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEV 295
            L++        +   +  +L    R    + S   A  +F +   ++ +  +   +   
Sbjct: 649 RLVSASHLDYFNRRPRMPKSLIQKHREGLIIGSACEAGEIFQAILREKEETELARLVSFY 708

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
              +   +    +  +        +      N  ++    +      A  +  +     +
Sbjct: 709 DYLEIQPIGNNSFMLRSDKYTAETEEDLRQYNKRVVELGEHYNKPVVATCDVHFLDPEDE 768

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLST 386
           +  ++        D      +     E++  
Sbjct: 769 IYRRIIMAGKGFKDADDQPPVYLRTTEEMLE 799


>gi|257439598|ref|ZP_05615353.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257197965|gb|EEU96249.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 1417

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/391 (14%), Positives = 120/391 (30%), Gaps = 39/391 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F ++D ET G D  ++   +   V V R  E +E  + F           P+   +TGIT
Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIV-RNGEVVEEFDTF---VKPGKPITPKITELTGIT 452

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E E      +F       ++ +N   FD  + +    R+           
Sbjct: 453 NEMVADAPG-EKEALEAFLRF--ADGRILVAHNAHAFDIRFLKAAAKRSGI-------SF 502

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L + +A+Y    +             +K   +     +    AH A  D  A 
Sbjct: 503 EPTYIDTLTMAQAMYPGLHN-------------YKQGTINKHLELPSYEAHRACEDSAAL 549

Query: 185 LALVWLIREKKPKLFEYLYDYRN-----KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             +  ++     +      +  N       ++ K    +    L+ +       ++   +
Sbjct: 550 GRIFCVMLSDLAEKEVTTVEGINTGLGGNREVLK----KKYFHLIILVKNQMGLKNLYKI 605

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
           ++    +  +K   +  +L    R    L S   A  L+ +  E +    +  K      
Sbjct: 606 VSEAHVNYFFKKPRVPRSLLNKYRDGLILTSACEAGELYRAVVEGRSYEELK-KIASYYD 664

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
              + P+   +    +      +   + N T++R   +L     A  +  +T     +  
Sbjct: 665 VLEIQPLGNNEYMVRDGKVESEEVIKDFNRTIIRLGEDLHKPVIATGDVHFTEPEDAIYR 724

Query: 359 Q-LYDGFFADVDRQIMDRILRTAPEQLSTLN 388
             L  G              RT  + L   +
Sbjct: 725 TVLQAGNGFKDADTQPPLFYRTTEDMLKQFS 755


>gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
 gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
          Length = 1036

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/452 (12%), Positives = 124/452 (27%), Gaps = 44/452 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   A +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 429 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEF---IDPGHPLSAFTTELTGI 484

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T               + + +F +     ++  +N  FD  +    + R+          
Sbjct: 485 TDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHNATFDVGFMNANYERHNLPLI----- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 536 -TQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALEHHHMANYDAEA 581

Query: 184 TLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++    +    L +   K           +             ++   L++
Sbjct: 582 TGRLLFIFLKEARENRDVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     S      + L               L   +   +         
Sbjct: 642 --LSNVKYFEGVARIPRSVLDAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYDFI 699

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ------QTNLRDRFKAIYNKPYTSSSQD 355
            +MP    +         D     + +  L +      +  L                + 
Sbjct: 700 EVMPPAIYRPLVVRDLIKDEVGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPEDEIYREI 759

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNF--PHT 411
           +   L  G   +      +         L   +   ++  L E  F  +  A      +T
Sbjct: 760 IVRSLGQGAMINRTIGRGEDAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYEIVVTNT 816

Query: 412 LSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            +  ++ + +E  K  L    ++  + ++  L
Sbjct: 817 NTFADRFEDVEVVKGDLYTPFVDRAEERVAEL 848


>gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
 gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
          Length = 1437

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/476 (13%), Positives = 151/476 (31%), Gaps = 44/476 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I+D ET G     D+  Q + V++ +    +++ + F       +    + + +TGIT
Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKM-KNGVVLDTFDQF---INPGFPLSEQTINLTGIT 465

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     EAE  +   QF     T + G+N I+FD  +  +    +           
Sbjct: 466 DDLVKNS-KPEAEVLKMFQQF--YAGTILAGHNVIKFDYGFVNHALAVHKLP------KI 516

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L++ R +Y                  + L  L+    +   + H A  D  AT
Sbjct: 517 NTLVIDTLNLARWLY-------------PNFGRYTLDFLSKKFSVNLEHHHRAIDDSTAT 563

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP--LVHVSGMFGASRSNTALIAP 242
             L+ +  ++  + +  +YD +           +   P  L  +       ++   L++ 
Sbjct: 564 GMLLHIFLKEAEENYGVVYDEQLNEHTDDHESWRQTRPTHLSILVKNQTGLKNLYKLVSE 623

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y+ S +  +L    R    + S  +   LF +         + + +        
Sbjct: 624 SNINYHYRVSRVPKSLLTKYRNGLLVGSGDIGGNLFDTLAREGIDKAIELADSINYDYIE 683

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P++  +      +  D     + +    +  ++ +    +    +  + +D   +   
Sbjct: 684 VQPLENYQPRIESGFIKDRATLEKLIKQYVKLADILELPLVVTGDVHYLTEKDRIYRTIL 743

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                           T  +          D    E  F    +   + +  +      +
Sbjct: 744 LNSKIARSAAAGETRYTLADLSMKKTQHLLD----EFAF--LGKEKAYEIVVENSHKINQ 797

Query: 423 HR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
                   KK L+  +IE  ++ L+      + E  G+   + +   L   L  +I
Sbjct: 798 MIDDVQPLKKGLSTPKIEGSEDILRKKAYARAKEMYGNPLPDLIQKRLDRELNAII 853


>gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis
           OL]
 gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
           OL]
          Length = 1402

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 145/477 (30%), Gaps = 54/477 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G D   ++  +   V++    +  E    F      +         +TGI
Sbjct: 389 TFVVVDVETTGFDSQKNKIIEIGAVKI-ENGQITERFSTF---VDPEGKIPVRISELTGI 444

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +           I +F    +  ++  +N +FD  + +  +             
Sbjct: 445 YQDMVDKAPK----LRDAILEFEKFASGSVLVAHNAQFDIGFLKKAYQECGI-------I 493

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L++ R                 G +S KL  +A    +E  + H A +D   
Sbjct: 494 FDYTYIDTLELSR-------------RLLTGLSSHKLNKVAEFLNVELRHHHRADSDAET 540

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAP 242
           T  +   + E+            N  +     D+++ +    +        ++   L++ 
Sbjct: 541 TAGIFTSLMERLKVRGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY 600

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 YK   I  +    ++    + S   +  +F +  E K    +  K         
Sbjct: 601 SHLEYFYKRPRIPKSFLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIE-KIATFYDFLE 659

Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           +MP++       E +  D +   E N  + +    L     A  +  Y    Q V  Q+ 
Sbjct: 660 IMPVENNSFLIREGYLKDEESLREINKKIYQLGKKLGKLVVATSDAHYCHPHQRVLRQIL 719

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                               E    L    +D  L E  F Y   +  + +  +      
Sbjct: 720 KHNQGYN-----------DVENDPQLYFRTTDEMLKE--FEYLGPDACYEVVVENTNKIA 766

Query: 422 EHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +  +            +IE  + ++ ++    + E  GD   E +   L + L  +I
Sbjct: 767 DMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSII 823


>gi|291548851|emb|CBL25113.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Ruminococcus torques L2-14]
          Length = 231

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 59/204 (28%), Gaps = 28/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   ++ +D ET G         +   ++V    + ++    F      D    P    I
Sbjct: 1   MLKSYIAFDLETTGLSPQEHEIIEIGALKVRE-GKVVDRFMEF---VHPDKPITPMITNI 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT            E    IH F S     ++  +N+ FD  + +    R        
Sbjct: 57  THITNDMVAGA-RSCPEV---IHDFLSFCEDDVLIGHNVMFDYSFVKCSAVREGL----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + R ++                 S  L  L     IE+  AH A  D
Sbjct: 108 --TFEKMGIDTLKIARKVH-------------KDFESKSLGALCDYYHIENPAAHRAYYD 152

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  L   +          ++ 
Sbjct: 153 ALATAKLYQTLAHYFEPQDPKVFQ 176


>gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1]
 gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 588

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 61/200 (30%), Gaps = 25/200 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     D   +   V++ R  E I                 P  V ITGI
Sbjct: 23  TFVVVDLETTGARPGEDAITEIGAVKI-RGGEVIAEMATL---VDPGRSIPPHIVEITGI 78

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E    R +  F       ++  +N  FD  + +                
Sbjct: 79  TTAMVIDAPRIE----RVLPAFLEFARGAVLVAHNAPFDTGFLKAAASATDTPW------ 128

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               ++ +L  ++                D A S KL  LA    +     H A  D  A
Sbjct: 129 ---PKFTVLCTVKLARRVL--------SRDEAPSVKLSSLARLFDVGTTPTHRALDDARA 177

Query: 184 TLALVWLIREKKPKLFEYLY 203
           T+ ++  +  +      +  
Sbjct: 178 TVDVLHALIARVGNQGVHSL 197


>gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
           14600]
 gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
           14600]
          Length = 1532

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/392 (14%), Positives = 99/392 (25%), Gaps = 35/392 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     DR  +   VR+       +    F                +T 
Sbjct: 498 DSFVVFDIETTGFSAEKDRIIEIGAVRM-EGGRITDRFSSF---VNPGRPIPFRITELTS 553

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     +    +E      +  F +     I+  +N  FD  + R    R   ++     
Sbjct: 554 IRDDMVIGSAGIE----EVLPDFLAFSQGAIMVAHNADFDMGFIRQNCLRLHLEAPAT-- 607

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    +D +       P               KL  LA A  I+  + H A  D  
Sbjct: 608 --------YMDTVAMGRYLMPSLHN----------QKLNTLAKALKIDPGHHHRAVDDAE 649

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV-SGMFGASRSNTALIA 241
           AT  +     +             N N       I+ M     +        R N   + 
Sbjct: 650 ATAHIFEKFIQMFRDRGMNELSDINANARMSDEVIRKMHANHCILIARNDIGRINLYKLT 709

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE----VHL 297
            +  H R+         S   +  + L      +          G  P  I         
Sbjct: 710 SL-SHLRFFQRQAKIPKSLVEKYREGLIIGSACEAGELFQALEGGRPPQEISRIVSFYDY 768

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDV 356
            +   +    +  +   +    +      N  ++R   +      A  +  +     +  
Sbjct: 769 LEIQPIGNNRFLLEADNDNIQTEEDLRDFNRRIVRLGEDFHKPVCATGDVHFLNPEDEIY 828

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLN 388
              +  G             L T  E L   +
Sbjct: 829 RRIIQVGKGFKDADHQPPLFLHTTEEMLEEFS 860


>gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4]
 gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4]
          Length = 588

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 61/200 (30%), Gaps = 25/200 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     D   +   V++ R  E I                 P  V ITGI
Sbjct: 23  TFVVVDLETTGARPGEDAITEIGAVKI-RGGEVIAEMATL---VDPGRSIPPHIVEITGI 78

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E    R +  F       ++  +N  FD  + +                
Sbjct: 79  TTAMVIDAPRIE----RVLPAFLEFARGAVLVAHNAPFDTGFLKAAAAATDTPW------ 128

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               ++ +L  ++                D A S KL  LA    +     H A  D  A
Sbjct: 129 ---PKFTVLCTVKLARRVL--------TRDEAPSVKLSSLARLLDVGTTPTHRALDDARA 177

Query: 184 TLALVWLIREKKPKLFEYLY 203
           T+ ++  +  +      +  
Sbjct: 178 TVDVLHALIARVGNQGVHSL 197


>gi|281355248|ref|ZP_06241742.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281318128|gb|EFB02148.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 185

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 68/197 (34%), Gaps = 30/197 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I+D ET G     DR  + A VRVDR    +   +              +AV +  IT
Sbjct: 9   FTIFDVETTGMSPVRDRIVELAAVRVDRDGS-LSRFQSL---VNPGVRIPAQAVAVHHIT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                        F+R    F    +   +  +N RFD  + +    R     ++     
Sbjct: 65  DDMVAGAPS----FARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLPLWKGK--- 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV---NAHDAKADV 181
                  LD +R +    P+            S+ LQ L     +E     NAH A ADV
Sbjct: 118 ------TLDSLRLLKTTFPNL----------PSYNLQSLRAYFQLETEKGMNAHRAGADV 161

Query: 182 YATLALVWLIREKKPKL 198
             T  ++ +   K  ++
Sbjct: 162 EWTRQVLEIALSKAIRM 178


>gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 663

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 82/265 (30%), Gaps = 27/265 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   + A V++  +   IES + F       +      V +TGI
Sbjct: 426 TYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRTTVDLTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E E  R   +F       I+  +N  FD  +    + R           
Sbjct: 482 TDGMVRGS-KSEEEVLRMFLEF---SKDTILVAHNAAFDMGFLNTSYARYGIPEAAN--- 534

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                  F L  L+   G+     H A  D  A
Sbjct: 535 ---PVIDTLELARYLY-------------PQFKRFGLGVLSKKFGVSLEQHHRAIYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L W+  ++       LY  +    + +    +   P          +          
Sbjct: 579 TGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLIS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDL 268
             +  Y + V     S   ++ ++L
Sbjct: 639 MSNVEYFERVPRIPRSQLKKMRENL 663


>gi|295398912|ref|ZP_06808894.1| DnaQ family exonuclease/DinG family helicase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978378|gb|EFG53974.1| DnaQ family exonuclease/DinG family helicase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 921

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 75/221 (33%), Gaps = 28/221 (12%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M + FVI D ET G      DR  Q   V V    + IE    FF     +    P    
Sbjct: 1   MKDRFVIMDLETTGNVPKKGDRIIQLGMVVV-ENGQIIERFSSFF---NPERDIPPFVQQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I  Q      V  AE + ++              +N+ FD  + +   +   +  + 
Sbjct: 57  LTNINEQMVADAPV-FAEEAAKVVDMLQQS---YFVAHNVSFDLQFLQEELHMAGFPPF- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D +++ R ++               A S+KL DLA    I H   H A +
Sbjct: 112 -----SGPTIDTVELARIVF-------------PDAESYKLADLAKLLCIAHDQPHHADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
           D   T  L   + ++  +L      +  +       D+ ++
Sbjct: 154 DAEVTAKLFIALLDRLRQLPLVTLQHLKRLSAYLKSDLYSL 194


>gi|312110481|ref|YP_003988797.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y4.1MC1]
 gi|311215582|gb|ADP74186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y4.1MC1]
          Length = 921

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 75/221 (33%), Gaps = 28/221 (12%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M + FVI D ET G      DR  Q   V V    + IE    FF     +    P    
Sbjct: 1   MKDRFVIMDLETTGNVPKKGDRIIQLGMVVV-ENGQIIERFSSFF---NPERDIPPFVQQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I  Q      V  AE + ++              +N+ FD  + +   +   +  + 
Sbjct: 57  LTNINEQMVADAPV-FAEEAAKVVDMLQQS---YFVAHNVSFDLQFLQEELHMAGFPPF- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D +++ R ++               A S+KL DLA    I H   H A +
Sbjct: 112 -----SGPTIDTVELARIVF-------------PDAESYKLADLAKLLCIAHDQPHHADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
           D   T  L   + ++  +L      +  +       D+ ++
Sbjct: 154 DAEVTAKLFIALLDRLRQLPLVTLQHLKRLSAYLKSDLYSL 194


>gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159]
 gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159]
          Length = 1465

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/474 (12%), Positives = 126/474 (26%), Gaps = 35/474 (7%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    +V++D ET G     +   Q A  ++  +   +E  + F       +        
Sbjct: 420 MNEATYVVFDVETTGLSAINNDLIQIAASKM-HKGNIVEQFDEF---IDPGHPLSQFTTD 475

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT Q            S+ + +F S     ++  +N  FD  +    + R+      
Sbjct: 476 LTGITDQHVKGAKP----ISQVLQEFQSFCQDTVLVAHNATFDVGFMNANYERHDLP--- 528

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D L+  R +Y                    L  L     +   + H A  
Sbjct: 529 ---KITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANY 572

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           D  AT  L+++  ++  +            ++      +          +          
Sbjct: 573 DAEATGRLLFIFLKEAKEKHGVNNLLDLNTKIVDDNSYKKARVKHATIYVLNQKGLKNLF 632

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
                 +  Y   V     +   +    L               L   V   ++      
Sbjct: 633 KLVSLSNVTYFAGVARIPRTILDQYRDGLLLGTACSDGEVFDTVLSKGVEDAVEVAKYYD 692

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
              +MP    +         D     + +  L +    L     A  +  Y     ++  
Sbjct: 693 FIEVMPPALYEPLLARELIKDEAGIQQIIKDLIEVGRRLDKPVLATGDVHYLEPEDEIYR 752

Query: 359 QLYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSE 414
           ++                      P  L   +   ++  L E  F     AR+       
Sbjct: 753 EIIVRSLGQGAMINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLARDIVIKNPN 812

Query: 415 KEKQDWL--EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
           +  + +   E  K  L    IE  + K+  ++ E   +     L + +   ++ 
Sbjct: 813 EMVERFEDVEVVKTDLYTPFIENSEEKVAEMTYEKAFEIYGNPLPDIIDLRIEK 866


>gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
 gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
          Length = 967

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 59/191 (30%), Gaps = 28/191 (14%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            N  ++ D+ET G      D   Q   V +D   +  ES               P    +
Sbjct: 1   MNRLLVVDFETTGSHPRQGDSIIQIGAVAID-DGQITESFSTL---IHPGQDIPPFITQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       +E         F  + +      +N  FD  + +       Y +   
Sbjct: 57  TGITNEMVADAPSLE----EVFPDFLRLLDGRAFVAHNASFDLQFLQEALLSQGYYA--- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     +LD +                     S++L +LA    IEH N H A +D
Sbjct: 110 ------FDGYVLDTVELSRVLL----------PMQNSYRLGELASELEIEHDNPHQADSD 153

Query: 181 VYATLALVWLI 191
             AT  L   +
Sbjct: 154 ALATAQLFLHL 164


>gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 1407

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/481 (13%), Positives = 141/481 (29%), Gaps = 53/481 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + F ++D ET G     D   +   V++ ++ + I++ E F                +
Sbjct: 390 LEDEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKL 445

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI          +E E   +  +F    N+ ++ +N      +        N   +   
Sbjct: 446 TGIDESMVKDAPSIE-EILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNVNNA- 501

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     +LD +        D            ++KL  LA    ++  + H A  D
Sbjct: 502 ----------VLDTLELSRHLYKDL----------KNYKLDTLADHLQVKLEHHHRAVDD 541

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +     ++  +L        N       +DI+ + P+ HV+ +    +    L 
Sbjct: 542 AMATAEIFIKTIDRLKELGVEKVKDINAILKESEVDIRKL-PVYHVTILVKDQKGLRNLY 600

Query: 241 APVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LN 298
             ++  +  Y         S  + + + L      ++       +  L    ++ +    
Sbjct: 601 EIISKSNLEYFHRTPRIPKSLLISMREGLIIGSACEQGEVFRAIVSNLEEKKLENIISFY 660

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
               + P+   +    +      +   E    +       ++        +     D   
Sbjct: 661 DYLEVQPVGNNEFLIEKGEVKSVEELREINQKIYLLGKKYNKLVVATGDVHFLDPWDDIY 720

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           +                      ++   L    +D  L E  F Y        +      
Sbjct: 721 RKILMAGKGYK----------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNPN 768

Query: 419 DWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +  +++  +        IE  + +L+ L    + E  GD   E + N L   L  +I
Sbjct: 769 KIADLVEEVKPIPDGTFPPVIEGAEEELRRLTLDKAHEIYGDPLPEIVQNRLDRELNSII 828

Query: 469 P 469
            
Sbjct: 829 N 829


>gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
 gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
          Length = 1451

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 106/387 (27%), Gaps = 31/387 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ +D ET G   A DR  +   VR+    E  +    F      +     +   +TGI 
Sbjct: 434 YISFDLETTGLSAANDRITEIGAVRI-HNGEITDVFNTF---VNPERPIPAKITELTGIN 489

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +     E E      +F       ++  +N  FD  + + +  R+  D        
Sbjct: 490 DSMVIDAPK-EKEAVEAFLEFCGKEP--VLLAHNAPFDTSFIQAVAARHNLDF------- 539

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N+  D + + RA+               G  + KL  +A    +   N H A  D    
Sbjct: 540 SNTYLDTVPMCRAM-------------LPGIKNHKLDTVAKHLKLAPFNHHRASDDAMVL 586

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +  ++ ++  + ++        N      DI+ +     +  +  ++           
Sbjct: 587 ANIFLVLLQRLQEDYQIG-KVSQINTALAGGDIKKLRSYHQIILVKNSTGLKNLYKLISY 645

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKCPIL 303
            H  Y         S  M+  + L      +        + G      +          +
Sbjct: 646 AHLDYFYKKPRIPKSVLMKHREGLLIGSACEAGELFRAIVSGQPWNELVSIAKFYDYLEI 705

Query: 304 MPIDYCKKEHFERWGIDHKRCLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            P+        +      ++  E     +   Q   +                D    L 
Sbjct: 706 QPLGNNMFMLRDGTVQTEEQLREFNRTVIKLGQELNKPVVATCDVHFMDPHDSDYRKILM 765

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLN 388
            G       Q      RT PE L    
Sbjct: 766 AGQGFTDADQQAPLYYRTTPEMLQEFA 792


>gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
           pallidum SS14]
 gi|6014996|sp|O83649|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon
 gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 215

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 66/212 (31%), Gaps = 25/212 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F  +D ET G     DR  +   V  DR+   I            D    P+   I  IT
Sbjct: 15  FTAFDTETTGLKAEEDRIIEIGAVTFDRKG-IIARFSTL---IFPDRAIPPDVSKINHIT 70

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +       E      +F       ++  +N  FD  +           S       
Sbjct: 71  DDMLVNKPR-FCEIVSDFSRFIK---GTVLVAHNANFDVEFLNAEL------SLCKKQPL 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +   D   + +A++                  ++LQ+LAL  G+    AH A+ D    
Sbjct: 121 SHKVVDTYAMAQAVFPGLGRHQ-----------YRLQNLALQFGLTVHAAHRAEDDARVC 169

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
           + L   +     K   +  ++     ++KLI 
Sbjct: 170 MELFTTMIAHHAKQNGHCVNHAQSPTIKKLIQ 201


>gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
 gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
          Length = 1424

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/446 (12%), Positives = 118/446 (26%), Gaps = 34/446 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 385 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIVEQFDEF---IDPGHPLSAFTTELTGI 440

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+   +      
Sbjct: 441 TDNHVKGA-KPLVQVLQEFQEF---CQGTVLVAHNATFDVGFMNANYERHQLPTIL---- 492

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 493 --QPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 537

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +            +   +L      +          +   +          
Sbjct: 538 TGRLLFIFIKDVFDKHGLTNLEQLNTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVS 597

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     +      + +               L   +   ++         +
Sbjct: 598 LSNVSYFEGVARIPRTVLDEYREGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEV 657

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    D     + +  L +  N  D+        +  + +D   +    
Sbjct: 658 MPPAIYAPLIAKGLIKDEAAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 717

Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418
                   I   I       P  L   +   ++  L +  F  +  A     T ++    
Sbjct: 718 RALGQGAMINRPIGKGENAKPAPLPEAHFRTTNEMLDDFAFLGKDLAYKIVVTNTQAMAD 777

Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442
                E  KK L    I+  + ++  
Sbjct: 778 QIEEVEVVKKDLYTPFIDRAEEQVAE 803


>gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus vestibularis F0396]
 gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus vestibularis F0396]
          Length = 1464

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/446 (12%), Positives = 117/446 (26%), Gaps = 34/446 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 425 TYVVFDVETTGLSAVHNDLIQIAASKM-HKGNIVEQFDEF---IDPGHPLSAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 481 TDNHVKGA-KPLVQVLQEFQEF---CQGTVLVAHNATFDVGFMNANYERHQLP------T 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 ISQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALDHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +            +   +L      +          +   +          
Sbjct: 578 TGRLLFIFIKDVFDKHGLTNLEQLNTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             +  Y + V     +      + +               L   +   ++         +
Sbjct: 638 LSNVSYFEGVARIPRTVLDEYREGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEV 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           MP         +    D     + +  L +  N  D+        +  + +D   +    
Sbjct: 698 MPPAIYAPLIAKDLIKDEAAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIV 757

Query: 364 FFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418
                   I   I       P  L   +   ++  L +  F  +  A     T ++    
Sbjct: 758 RALGQGAMINRPIGKGENAKPAPLPEAHFRTTNEMLDDFAFLGKDLAYKIVVTNTQAMAD 817

Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQS 442
                E  KK L    I+  + ++  
Sbjct: 818 QIEEVEVVKKDLYTPFIDRAEEQVAE 843


>gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 574

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 61/201 (30%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G         +   V+V R  E +                 P    +TGI
Sbjct: 20  TFVVFDLETTGVSAGEHAITEIGAVKV-RGGEVLGEFGTL---VDPGSPIPPFISVLTGI 75

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      +  F        +  +N  FD  + +     + Y        
Sbjct: 76  TDTMVVAAPKIE----SVLPSFLEFAEGTTLVAHNAGFDLGFIKAACAAHGYPPPA---- 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++D +                 D A + KL  LA     +    H A AD  A
Sbjct: 128 -----HPVVDTVVLARKLL--------TRDEAPNCKLSTLARIF-SKTEPRHRALADAQA 173

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+      +  +
Sbjct: 174 TVDVLHALLERAGSFGVHTLE 194


>gi|225026305|ref|ZP_03715497.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
 gi|224956369|gb|EEG37578.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
          Length = 1484

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/403 (11%), Positives = 110/403 (27%), Gaps = 43/403 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D   +   V+V  + +  +   VF                +T 
Sbjct: 451 DDYVVFDLETTGFSPIHDAIIEIGAVKV-SKGKISDHYSVF---VNPQRPIPLRITELTS 506

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I          +E      + +F S    C +  +N  FD  +      R  ++      
Sbjct: 507 IDDSMVADAKSIE----EILPEFLSFCEGCSLVAHNAEFDVSFIEENAKRQGFE------ 556

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               + + +LD ++       D  +          FKL  +     I+  + H A  D  
Sbjct: 557 ----TDFTVLDTVQMARLLLTDLNK----------FKLNTVCKRLNIKQEHHHRAVDDAR 602

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLR--KLIDIQNMTPLVHVSGMFGASRSNTALI 240
            T  +     E   +   +     N        LI        + +        +   L+
Sbjct: 603 VTAEVFLRFVEMLEEQDVHTLAKLNDMGAMSPDLIKKAPSYHGIILVKNETGRINLNRLV 662

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLN 298
           +        +   +  +L    R    L S   A  LF +    + +  +   ++     
Sbjct: 663 SASHLDYFNRRPRMPESLIQKYREGLILGSACEAGELFQAVIRGKSEEELAELVRFYDYL 722

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           +   +    +  +               N  ++           A  +  + +   +   
Sbjct: 723 EIQPIGNNMFMLESDRYEAKTVEDLQNYNRKIVELGERYHKPVVATCDVHFLNPEDEQYR 782

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
           ++                  +  +  + L    ++  L E  +
Sbjct: 783 RILMAGKGF-----------SDADNQAPLYFRTTEEMLEEFAY 814


>gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 1407

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/481 (13%), Positives = 141/481 (29%), Gaps = 53/481 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + F ++D ET G     D   +   V++ ++ + I++ E F                +
Sbjct: 390 LEDEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKL 445

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI          +E E   +  +F    N+ ++ +N      +        N   +   
Sbjct: 446 TGIDESMVKDAPSIE-EILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNVNNA- 501

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     +LD +        D            ++KL  LA    ++  + H A  D
Sbjct: 502 ----------VLDTLELSRHLYKDL----------KNYKLDTLAEHLQVKLEHHHRAVDD 541

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +     ++  +L        N       +DI+ + P+ HV+ +    +    L 
Sbjct: 542 AMATAEIFIKTIDRLKELGVEKVKDINAILKESEVDIRKL-PVYHVTILVKDQKGLRNLY 600

Query: 241 APVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LN 298
             ++  +  Y         S  + + + L      ++       +  L    ++ +    
Sbjct: 601 EIISKSNLEYFHRTPRLPKSLLISMREGLIIGSACEQGEVFRAIVSNLEEKKLENIISFY 660

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
               + P+   +    +      +   E    +       ++        +     D   
Sbjct: 661 DYLEVQPVGNNEFLIEKGEVKSVEELREINRKIYLLGKKYNKLVVATGDVHFLDPWDDIY 720

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           +                      ++   L    +D  L E  F Y        +      
Sbjct: 721 RKILMAGKGYK----------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNPN 768

Query: 419 DWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +  +++  +        IE  + +L+ L    + E  GD   E + N L   L  +I
Sbjct: 769 KIADLVEEVKPIPDGTFPPVIEGAEEELRRLTLDKAHEIYGDPLPEIVQNRLDRELNSII 828

Query: 469 P 469
            
Sbjct: 829 N 829


>gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
 gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
          Length = 1421

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/487 (12%), Positives = 125/487 (25%), Gaps = 74/487 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V+ D+ET G     D   +   V+      +++           D     E   +TGI
Sbjct: 408 TYVVLDFETTGFSPQTDEIIEIGAVKF-INGMEVDRFGTL---VKPDKEIPFEVSKLTGI 463

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +    + +F       ++  +N  FD  + +  F +           
Sbjct: 464 TLDMVKDAPDA-RQALAALREFI---GDAVLVAHNAAFDLSFLKVGFRKYLQVEVTNQ-- 517

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L   R                    + KL  L     IE  N H A  D  A
Sbjct: 518 ----VVDTLGTARV-------------LLPHLKNHKLDTLVKEFKIELANHHRAVDDAAA 560

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L  ++  K  +         ++       D      +  +       ++   LI+  
Sbjct: 561 TGKLWQVLLTKAVEQGAQDLAALSQLGQGVSTDKLRSRHVTILVKDQVGLKNLYQLIS-- 618

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV----HLNK 299
             H +Y            ++  + L      +        L G     ++E+       +
Sbjct: 619 LSHLKYYHRQPRIPRHELIKYREGLLVGSACEAGEIFQALLSGCSQEELEEMAAFYDFLE 678

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              L   ++  +        D K     +  +  +  +        +             
Sbjct: 679 IQPLGNNEFLLRSGQVGSQEDLKNLNRRIIDIGNKLGIPVVATGDVHFLNPEDEIYRRIL 738

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--------------RYRA 405
           +    F                +  + L    +D  L E  +              R  A
Sbjct: 739 MAGKGFD-------------DADNQAPLYFKTTDEMLEEFSYLGEATARQVVITNPRMIA 785

Query: 406 RNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALY 461
                     +     +     L    IE  + ++  +    + E  G+   E +   + 
Sbjct: 786 ----------DMVQTFKPIPDELHPPIIEGAEQQITEMTLRRARELYGNPLPEIVQQRID 835

Query: 462 EYLQWVI 468
           + L+ +I
Sbjct: 836 KELKSII 842


>gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
           12755]
 gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
           12755]
          Length = 918

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 27/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   + + D ET G D  +DR  QF  V V +  + I            D     +   +
Sbjct: 1   MKPIYAVVDLETTGTDSTIDRIIQFGCVLV-QDGKIINRF---AADINPDRRISKQIQRL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT Q+  +    E + +  I+   S  NT  + +N   FD ++  N F R        
Sbjct: 57  THITNQQVSKAPYFE-DVADTIYNLLS--NTIFVAHNIY-FDYHFLSNEFVRCGLPPL-- 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D +     F              +SF+L DLA + G  H N H A +D
Sbjct: 111 -------SLPGIDTVELAQVFL----------PTESSFRLGDLADSIGFRHDNPHQADSD 153

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
              T AL   I     +L      
Sbjct: 154 AEVTAALFLYIEAIMRELPRTTLK 177


>gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20]
 gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20]
          Length = 918

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 27/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   + + D ET G D  +DR  QF  V V +  + I            D     +   +
Sbjct: 1   MKPIYAVVDLETTGTDSTIDRIIQFGCVLV-QDGKIINRF---AADINPDRRISKQIQRL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT Q+  +    E + +  I+   S  NT  + +N   FD ++  N F R        
Sbjct: 57  THITNQQVSKAPYFE-DIADTIYNLLS--NTIFVAHNIY-FDYHFLSNEFVRCGLPPL-- 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D +     F              +SF+L DLA + G  H N H A +D
Sbjct: 111 -------SIPGIDTVELSQVFL----------PTESSFRLGDLADSIGFRHDNPHQADSD 153

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
              T AL   I     +L      
Sbjct: 154 AEVTAALFLYIEAIMRQLPRTTLK 177


>gi|332359968|gb|EGJ37782.1| DNA polymerase III PolC [Streptococcus sanguinis SK1056]
          Length = 866

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 118/449 (26%), Gaps = 38/449 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 423 TYVVFDVETTGLSAVYNDLIQVAASKM-HKGNIIAEFDEF---INPGHPLSAFTTDLTGI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 479 TDEHVRNA-KPLEQVLKEFQEF---CQDSVLVAHNATFDVGFMNVNYERHGLP------K 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     I   + H A  D  A
Sbjct: 529 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQIALEHHHMANYDAEA 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +             L      +          +   +          
Sbjct: 576 TGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVS 635

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               +   V   ++         +
Sbjct: 636 LSNTKYFEGVPRIPRTVLDTHREGLILGSACAEGEVYDAVVSQGVDAAVEVAKYYDFIEV 695

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +    +    D K     +  L+     L     A  N  Y    +++  ++  
Sbjct: 696 MPPAIYEPLIAKEQIKDQKELQTIIRNLIEVGERLGKPVLATGNVHYIEPEEEIYREIIV 755

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF------RYRARNFPHTLSE 414
                               P  L   +   ++  L E  F      +      P+ L  
Sbjct: 756 RSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQL-- 813

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
            E  + +E  K  L    I++ +  +  L
Sbjct: 814 AETFEPVEVVKGDLYTPFIDKAEETVAEL 842


>gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10]
 gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10]
          Length = 918

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 27/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   + + D ET G D  +DR  QF  V V +  + I            D     +   +
Sbjct: 1   MKPIYAVVDLETTGTDSTIDRIIQFGCVLV-QDGKIINRF---AADINPDRRISKQIQRL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT Q+  +    E + +  I+   S  NT  + +N   FD ++  N F R        
Sbjct: 57  THITNQQVSKAPYFE-DIADTIYNLLS--NTIFVAHNIY-FDYHFLSNEFVRCGLPPL-- 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D +     F              +SF+L DLA + G  H N H A +D
Sbjct: 111 -------SIPGIDTVELAQVFL----------PTESSFRLGDLADSIGFRHDNPHQADSD 153

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
              T AL   I     +L      
Sbjct: 154 AEVTAALFLYIEAIMRQLPRTTLK 177


>gi|302389800|ref|YP_003825621.1| DNA polymerase III catalytic subunit, PolC type
           [Thermosediminibacter oceani DSM 16646]
 gi|302200428|gb|ADL07998.1| DNA polymerase III catalytic subunit, PolC type
           [Thermosediminibacter oceani DSM 16646]
          Length = 1415

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/477 (12%), Positives = 131/477 (27%), Gaps = 55/477 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G  +  D   +   V+V R  + I+    F                +TGI 
Sbjct: 404 YVVTDIETTGLSLDADEIIEIGAVKVYR-GQIIDRFHSF---VNPGRPISSHITNLTGIN 459

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                +           +  F       I   +N  FD  + R    +            
Sbjct: 460 NAMVSQAPP----VKDVMSDFLRFIGNGIFVAHNAEFDAGFIRRDCKKFGM-------KF 508

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L++                      + +L  +A    I   + H A  D   T
Sbjct: 509 DNKVMDTLNLS-------------ALVFPELKNHRLDTIAKKFNINMGSHHRAGDDANTT 555

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             ++  + +K  +         N+   +    + +   ++ V       R    L++   
Sbjct: 556 ALILIELLKKLKEQGIDDLSMINQVNKKATQYLNSYHAIILVKNS-QGLRDLYKLVSISH 614

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
               Y+   I  +L    R    + S   A  LF S            + V       + 
Sbjct: 615 LEYFYRHPRIPKSLLKKYREGLIVGSGCEAGELFQSLI-YHHSDKDIERIVFFYDFLEIQ 673

Query: 305 PIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           P+   K    +    + ++  E N  + +             +  + +   +   ++   
Sbjct: 674 PLQNNKFLIEKGILSNEEKLKEINKRIYQLGKKYNKPVVITGDVHFLNPEDETYRKILLT 733

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL----SEKEKQD 419
                D  +   +     E++                 RY        +      +   +
Sbjct: 734 VQGYRDNNLDSGLYLKTTEEMLDEC-------------RYLGEEAAKEVVIENPNRIADE 780

Query: 420 WLEHRK---KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             +  K     L   +IE    ++ ++    + E  G+E  E +   +   L  ++ 
Sbjct: 781 IEDGIKPVPDELYPPKIEGADEEIINMTYNRAKEIYGEELPEIVKKRIERELNSIVN 837


>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1151

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 61/484 (12%), Positives = 131/484 (27%), Gaps = 53/484 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G D   D+  +   V++ R  E I     F      +    P+   +T IT
Sbjct: 117 YVVFDIETTGFDPFNDKIIEIGAVKM-RGREIIGEFSEF---VNPEIPIPPKITELTTIT 172

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       +E      + +F        +  +N +FD  + +        +        
Sbjct: 173 DEMVANAEKIE----TVLPRFLEFCTDTTVVAHNAKFDVGFIKQKTIEQGLE-------Y 221

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S  D L + R                  +  + L +L    GI     H A  D  AT
Sbjct: 222 SPSVIDTLPLART-------------LLPDSRGYGLANLVKYFGITLETHHRAVDDAKAT 268

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +                   N +    + + + +  ++ V    G       +     
Sbjct: 269 AEVFQKFLNMILSKGILKLIEINTDLQPNIQNSETLNTMILVKNQAGLRDLYELVSRSNI 328

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDL----DSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
                +   I   L   MR    +     + +  K    +            ++      
Sbjct: 329 EFFGMRRPRIPKTLLNSMRENLLIASSASASERNKGELVNLYLRGAEKDDIEEKARFYDY 388

Query: 301 PILMPIDYCKKEHFE--RWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
             + P         +  +    +    E      +    +++        +    ++  +
Sbjct: 389 IEIHPHTNYADMVEKTSKEIESYDIIKEMNKYFYELGKSQNKIVVATGDTHYLEEREAIN 448

Query: 359 Q--LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
           +  L  G       +  + +          L    ++  L    F Y        +  + 
Sbjct: 449 RNVLLLGSGTMWKTETSEGVRGYEFFDR-KLYFKTTEEILE--SFNYLGEEAAQEVVVEN 505

Query: 417 KQDWLEHRKKM------LTRSRIEEY--------KNKLQSLSGEYKGDEGKEGLINALYE 462
                +  +++          +IE           +KL+ L GE    + KE +   L  
Sbjct: 506 THKINDMIEQVRPIPTGFYPPKIEGAEDEVRKMTYSKLKELYGENIDPDLKERVEKELNS 565

Query: 463 YLQW 466
            +Q 
Sbjct: 566 IIQN 569


>gi|89901349|ref|YP_523820.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89346086|gb|ABD70289.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 476

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 28/195 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V+ D ET G +   DR  + A VR+    +++                 P    +
Sbjct: 1   MLPCYVLLDLETTGGNPVHDRITEIAAVRI-ENGQEVARWSTL---VNPGCSISPFIQHL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E   ++ +       +  ++  +N+RFD  +  N   R        
Sbjct: 57  TGISNAMVRGAPGFET-VAQHLLALL---DGAVLVAHNVRFDHGFLLNELARL------- 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   R   L  +R                       L  +   +GI  +  H A  D
Sbjct: 106 ---DVALRVKTLCTVRLSRLLY----------PQHKGHGLDAIMQRHGIRTLERHRAMGD 152

Query: 181 VYATLALVWLIREKK 195
           V    A + + R++ 
Sbjct: 153 VEVMQAWLQIARQEH 167


>gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
 gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
          Length = 1512

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/401 (12%), Positives = 107/401 (26%), Gaps = 43/401 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV++D ET G     ++  +   V+V       +    F      +         +T 
Sbjct: 487 ETFVVFDLETTGFSPDKNKIIEIGAVKV-VGGVITDRFSTF---VNPEVPIPFRIEELTS 542

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     +    +E      + +F       I+  +N  FD  + +        +      
Sbjct: 543 IKDDMVIDAPKIE----EILPEFMKFCEGAIMVAHNAEFDMSFIKKNCKDQGIE------ 592

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 + ++D +       P+  +          FKL  +A A  +   N H A  D  
Sbjct: 593 ----REFTIIDTVALARILLPNLNR----------FKLDTVAKALNVSLENHHRAVDDAA 638

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG--ASRSNTALI 240
            T  +     E   +      D  N         +  M     +          +   L+
Sbjct: 639 CTAEIFVKFIEMLKERGMENLDDVNHMVSTSPETVMKMPTYHAIILATNDIGRINLYRLV 698

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLN 298
           +        K   +  +     R    L S   A  L+ +      +  +   +K     
Sbjct: 699 SLSHLTYYNKRPRVPKSEFVKYREGLLLGSACEAGELYRAIVGGRPQEEIIRLVKFYDYL 758

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           +   L   ++  +   E      +    N  + R          A  +  +     ++  
Sbjct: 759 EIQPLGNNEFMLRSDKEPVNTMEELQDINRRICRLGEEFNKLVVATCDVHFLDPEDEIYR 818

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           ++                     ++ + L L  ++  L E 
Sbjct: 819 RIIMAGKGFK-----------DADEQAPLYLRTTEEMLKEF 848


>gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977]
 gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium
           abscessus]
          Length = 600

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 58/188 (30%), Gaps = 25/188 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     D   +   V+V R  E +                 P+ V +TGI
Sbjct: 27  TFVVVDLETTGGSAENDAITEIGAVKV-RGGEVLGELATL---VDPQRSLPPQIVRLTGI 82

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +         ++ +  F       ++  +N  FD  + +    +   D  +    
Sbjct: 83  TSAMLVDAPP----IAQVLPAFLEFARGAVLVAHNAGFDIGFLKAAARQCGIDWPQP--- 135

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  +L  +R                D A    L  LA   G      H A  D  A
Sbjct: 136 ------AVLCTVRLARRVL--------SRDEAPRVSLGALAQLLGASTTPNHRALDDARA 181

Query: 184 TLALVWLI 191
           T+ ++  +
Sbjct: 182 TVDVLHAL 189


>gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
 gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
          Length = 1426

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/399 (13%), Positives = 118/399 (29%), Gaps = 39/399 (9%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++  FV++D ET G     D+  +   V++ R +E ++           +         +
Sbjct: 408 LSQEFVVFDLETTGFSNINDKITEIGAVKI-RDFEIVDRFSEL---VNPEKDISYRVQEL 463

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       +E E   +  +F       ++  +N  FD  +          +    
Sbjct: 464 TGITNEMVKDKPTIE-EILPKFMEFV---GDDVLVAHNADFDTGFIMQKCKEQGLE---- 515

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N + D L + R +                   +KL  +A   G++ +N H A  D
Sbjct: 516 ---YKNKKVDTLMLARIM-------------LPNLKRYKLDKVAKEVGVQLLNHHRAVDD 559

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +         K         N    +          +  ++      ++   ++
Sbjct: 560 AEATANIFIKFLGMLKKQGVEKLSDVNTVLGKVDYTKLKTHHITLIAKNQTGIKNLYKIV 619

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    +  Y+   I  ++  + R    + S   A  ++ +  +      +  K +     
Sbjct: 620 SDAHVNHFYRAPRILQSVLDEYREGIIVGSACEAGVVYDAVKKRLPDEEME-KIIAPYDY 678

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             +MPID  +         D     E    + +      +        +     D   + 
Sbjct: 679 IEVMPIDNNRFMIDNGDVEDEDELKEINKRVVETAKKFGKIPVATGDVHFLDKHDAVLRR 738

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
              F                 ++ + L+   +D  L E 
Sbjct: 739 VLKFSQGFKLD----------DEETYLHFRTTDEMLDEF 767


>gi|289640817|ref|ZP_06472988.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289509393|gb|EFD30321.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 629

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 64/201 (31%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   A     +   V++ R  E +            D    P    +TGI
Sbjct: 92  TFVVVDLETTGSRAADSEITEIGAVKI-RGGEVLAELATL---VRPDAPIPPFISVLTGI 147

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++A     +  F    +  ++  +N  FD  + R    R  +        
Sbjct: 148 TDAMVATAPRIDA----ALPTFLEFAHGSVLVAHNAPFDLGFLREACVRCGHP------- 196

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                W+ LD +R                D     KL  LA     +    H A AD  A
Sbjct: 197 --VPDWEHLDTLRIARQVLG--------RDETPDHKLASLARLFPADAGPCHRALADARA 246

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+A++  + E+         +
Sbjct: 247 TVAVLHGLFERLGGFGVTTLE 267


>gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM
           43160]
 gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM
           43160]
          Length = 609

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V R  E +   +             P    +TGI
Sbjct: 38  TFVVVDLETTGGSPKDSAITEIGAVKV-RGGEVLGEFQTL---VDPGCEIPPYISVLTGI 93

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                 +  F       ++  +N  FD  + +     N          
Sbjct: 94  TSTMVAAAPR----IGAVLPHFLEFARGAVLVAHNAPFDLGFLKAACAANGIPWPAT--- 146

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D   + R +              D   + KL  LA          H A AD  A
Sbjct: 147 ---ASVDTAVLARRL-----------LSRDEVPNCKLATLAPYFRTSTEPCHRALADARA 192

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   L     +
Sbjct: 193 TVDVLHGLFERLGPLGITSLE 213


>gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 589

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 22/201 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     +   +   V+V R  E +                      +TGI
Sbjct: 43  TFVVVDLETTGAKPGPESITEIGAVKV-RGGETVGEFSTL---VNPGQPIPAFITSLTGI 98

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T     R   + A     + +F     + ++  +N RFD  + +  F    +        
Sbjct: 99  TTAMTARAPRI-AAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTWP----- 152

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + + R  +             D   +FKL  LA A G      H A  D  A
Sbjct: 153 -SVRVLDTVALARRAF-----------SSDEVPNFKLSTLAGACGATTAPNHRALDDARA 200

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  +  +   L     +
Sbjct: 201 TVDVLHAMLGRLGPLGVTHLE 221


>gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
 gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
          Length = 1468

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/403 (11%), Positives = 107/403 (26%), Gaps = 34/403 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I+  + F       +        +TGI
Sbjct: 429 TYVVFDVETTGLSAVNNSLIQIAASKM-HKGNIIDQFDEF---INPGHPLSQFTTDLTGI 484

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T               + + +F       ++  +N  FD  +    + R+          
Sbjct: 485 TDNHLKDAKP----LLQVLEEFQEFCQDTVLVAHNATFDVGFMNANYERHDLPLI----- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 536 -SQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALDHHHMANYDAEA 581

Query: 184 TLALVWLIREKKPKL--FEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++  +      L D   K           +             ++   L++
Sbjct: 582 TGRLLFIFIKEARENRGITDLADLNTKLVSEDSYKKARVKHATIYVQNQTGLKNIFKLVS 641

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     +   +  + L               L   +   ++        
Sbjct: 642 --LSNVKYFEGVARIPRTVLDQYREGLLLGSACSEGEVFDAVLSHGLDKALEVAKYYDFI 699

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP    +         + +   + +  L +    L     A  +  Y      +  ++
Sbjct: 700 EVMPPAIYRPLIARELIKNEEGIEQVIKDLIEVGRRLNKPVLATGDVHYLEPEDQLYREI 759

Query: 361 YDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
                                 P  L   +   ++  L +  F
Sbjct: 760 IVRSLGPGALINRPIGRGEGAQPAPLPDAHFRTTNEMLDDFAF 802


>gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1]
 gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus
           oeni PSU-1]
          Length = 1437

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 66/476 (13%), Positives = 153/476 (32%), Gaps = 44/476 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I+D ET G     D+  Q + V++ +    +++ + F       +    + + +TGIT
Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKM-KNGVVLDTFDQF---INPGFPLSEQTINLTGIT 465

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     EAE  +   QF++   T + G+N I+FD  +  +    +           
Sbjct: 466 DDLVKNS-KPEAEVLKMFQQFYAR--TILAGHNVIKFDYGFVNHALAVHKLP------KI 516

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L++ R +Y                  + L  L+    +   + H A  D  AT
Sbjct: 517 NTLVIDTLNLARWLY-------------PNFGRYTLDFLSKKFSVNLEHHHRAIDDSTAT 563

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP--LVHVSGMFGASRSNTALIAP 242
             L+ +  ++  + +  +YD +           +   P  L  +       ++   L++ 
Sbjct: 564 GMLLHIFLKEAEENYGVVYDEQLNEHTDDHESWRQTRPTHLSILVKNQTGLKNLYKLVSE 623

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
              +  Y+ S +  +L    R    + S  +   LF +         + + +        
Sbjct: 624 SNINYHYRVSRVPKSLLTKYRNGLLVGSGDIGGNLFDTLAREGIDKAIELADSINYDYIE 683

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           + P++  +      +  D     + +    +  ++ +    +    +  + +D   +   
Sbjct: 684 VQPLENYQPRIESGFIKDRATLEKLIKQYVKLADILELPLVVTGDVHYLTEKDRIYRTIL 743

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                           T  +          D    E  F    +   + +  +      +
Sbjct: 744 LNSKIARSAAAGETRYTLADLSMKKTQHLLD----EFAF--LGKEKAYEIVVENSHKINQ 797

Query: 423 HR------KKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWVI 468
                   KK L+  +IE  ++ L+      + E  G+   + +   L   L  +I
Sbjct: 798 MIDDVQPLKKGLSTPKIEGSEDILRKKAYARAKEMYGNPLPDLIQKRLDRELNAII 853


>gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 1417

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 55/386 (14%), Positives = 115/386 (29%), Gaps = 31/386 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F ++D ET G D  ++   +   V V +  E +E  + F           P+   +TGIT
Sbjct: 397 FCVFDTETTGLDPGVEYMTEIGAVIV-KNGEVVEEFDTF---VKPGKPITPKITELTGIT 452

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E E      +F    +  ++G+N   FD  + R    R+           
Sbjct: 453 NEMVADAPG-EKEALEAFLKF--AGDRILVGHNVHAFDMRFLRAAAKRSGI-------KL 502

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L + +A+Y    +             +K   +     +    AH A  D  A 
Sbjct: 503 EPTYIDTLTMAQAMYPGLHN-------------YKQGTINKHLELPAYEAHRACEDSAAL 549

Query: 185 LALVWLI-REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
             +  ++  + K K    + +        + +  +    L+ +       ++   +++  
Sbjct: 550 GRIFGVMLNDLKEKQVAKVSEINTGLGGNREVLKKKYYHLIILVKNQMGLKNLYKIVSEA 609

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE--LKGLVPVPIKEVHLNKCP 301
             +  +K   +  +L    R    L S   A  L+ +  +      +        + +  
Sbjct: 610 HVNYFFKKPRVPRSLLNKYRDGLLLTSACEAGELYRAIVDGTSYEELKKIASYYDILEIQ 669

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            L    Y  ++       D K     +  L +    +                   + L 
Sbjct: 670 PLGNNAYMVRDGKVDSEEDIKNFNRTVIKLGE-DLHKPVIATGDVHFTEPEDAAYRAVLQ 728

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTL 387
            G              RT  + L+  
Sbjct: 729 AGNGFKDADNQPPLFFRTTQDMLAQF 754


>gi|210612665|ref|ZP_03289413.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
 gi|210151467|gb|EEA82475.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
          Length = 234

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 28/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V++D ET G DV  D   +   ++V    +  +    F      D    P    I
Sbjct: 1   MIKTYVVFDLETTGLDVENDNIIEIGALKVRE-GKVTDRFMEF---LKPDMPISPMITGI 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +          +    I  F +     I+  +NI FD  + +         + ++
Sbjct: 57  TGITNEMVKNA----RDTKTVIRDFVNFCEDHILVGHNIMFDYKFMKK-------YASQY 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + R ++                 S  L+ L     I +  AH A  D
Sbjct: 106 GESFEKKGIDTLKIARKVH-------------KDLESKSLEALCEHYQIVNTAAHRAYHD 152

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  +  ++     +    +++
Sbjct: 153 ALATAKVYHMMAHYFEEKGPTVFE 176


>gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydibrachium pacificum DSM 12653]
          Length = 1375

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 71/474 (14%), Positives = 153/474 (32%), Gaps = 47/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G     D   +   V++ +  + +++ E F                +TGI 
Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKI-KNKKIVDTFETF---VNPQIPISSFITKLTGID 443

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   ++E      + +F       ++  +N  FD  + ++   +            
Sbjct: 444 ESMVKDAPLIE----EVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGL-------TV 492

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N+  D L++ R                    ++KL  LA    ++ ++ H A  D  AT
Sbjct: 493 ENTVLDTLELSR-------------HLYQDLKNYKLDTLAEFFEVKLLHHHRAVEDAKAT 539

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS---GMFGASRSNTALIA 241
             +   + EK  ++        N   + + +D++ + P+ HV+         R+   +I+
Sbjct: 540 AEIFIKMLEKLQEIGIKSVSEINSVLMEREVDVKKL-PVYHVTILVKDQKGLRNLYEIIS 598

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299
                  ++   I  +L   MR    + S      +F +   +  +  +   I      +
Sbjct: 599 RSNLEFFHRTPRIPKSLLVKMREGLIIGSACEQGEVFRALVSNLEEKKLEDIINFYDYLE 658

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              +   ++  +    R   + K     +  L ++ N         +             
Sbjct: 659 IQPVGNNEFLIERGEVRSVEELKEINRKIYELGKKYNKLVVATGDVHFLDPWDDVYRKIL 718

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +    + D DRQ       T       + + F    L E   R      P+ +   E  +
Sbjct: 719 MAGKGYKDADRQPPLYFRTTE-----EMLMEFE--YLGEEAAREVVIENPNKI--AEIVE 769

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
            ++   +      IE  + +L+ +    + E  GD     +   L   L  +I 
Sbjct: 770 DVKPIPEGTFPPVIEGAEEELRRITLEKAHEIYGDPLPPIVQERLDRELNAIIN 823


>gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4]
 gi|24418364|sp|Q8RA32|DPO3_THETN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type
           [Thermoanaerobacter tengcongensis MB4]
          Length = 1401

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 71/474 (14%), Positives = 153/474 (32%), Gaps = 47/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G     D   +   V++ +  + +++ E F                +TGI 
Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKI-KNKKIVDTFETF---VNPQIPISSFITKLTGID 443

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   ++E      + +F       ++  +N  FD  + ++   +            
Sbjct: 444 ESMVKDAPLIE----EVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGL-------TV 492

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N+  D L++ R                    ++KL  LA    ++ ++ H A  D  AT
Sbjct: 493 ENTVLDTLELSR-------------HLYQDLKNYKLDTLAEFFEVKLLHHHRAVEDAKAT 539

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS---GMFGASRSNTALIA 241
             +   + EK  ++        N   + + +D++ + P+ HV+         R+   +I+
Sbjct: 540 AEIFIKMLEKLQEIGIKSVSEINSVLMEREVDVKKL-PVYHVTILVKDQKGLRNLYEIIS 598

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNK 299
                  ++   I  +L   MR    + S      +F +   +  +  +   I      +
Sbjct: 599 RSNLEFFHRTPRIPKSLLVKMREGLIIGSACEQGEVFRALVSNLEEKKLEDIINFYDYLE 658

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              +   ++  +    R   + K     +  L ++ N         +             
Sbjct: 659 IQPVGNNEFLIERGEVRSVEELKEINRKIYELGKKYNKLVVATGDVHFLDPWDDVYRKIL 718

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
           +    + D DRQ       T       + + F    L E   R      P+ +   E  +
Sbjct: 719 MAGKGYKDADRQPPLYFRTTE-----EMLMEFE--YLGEEAAREVVIENPNKI--AEIVE 769

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
            ++   +      IE  + +L+ +    + E  GD     +   L   L  +I 
Sbjct: 770 DVKPIPEGTFPPVIEGAEEELRRITLEKAHEIYGDPLPPIVQERLDRELNAIIN 823


>gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1407

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 64/481 (13%), Positives = 140/481 (29%), Gaps = 53/481 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + F ++D ET G     D   +   V++ ++ + I++ E F                +
Sbjct: 390 LEDEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKL 445

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI          +E E   +  +F    N+ ++ +N      +        N   +   
Sbjct: 446 TGIDESMVKDAPSIE-EILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNVNNA- 501

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     +LD +        D            ++KL  LA    ++  + H A  D
Sbjct: 502 ----------VLDTLELSRHLYKDL----------KNYKLDTLADHLQVKLEHHHRAVDD 541

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +     ++  +L        N       +DI+ + P+ HV+ +    +    L 
Sbjct: 542 AMATAEIFIKTIDRLKELGVEKVKDINAILKESEVDIRKL-PVYHVTILVKDQKGLRNLY 600

Query: 241 APVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LN 298
             ++  +  Y         S  +   + L      ++       +  L    ++ +    
Sbjct: 601 EIISKSNLEYFHRTPRIPKSLLISRREGLIIGSACEQGEVFRAIVSNLEEKKLENIISFY 660

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
               + P+   +    +      +   E    +       ++        +     D   
Sbjct: 661 DYLEVQPVGNNEFLIGKGEVKSVEELREINRKIYLLGKKYNKLVVATGDVHFLDPWDDIY 720

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           +                      ++   L    +D  L E  F Y        +      
Sbjct: 721 RKILMAGKGYK----------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNPN 768

Query: 419 DWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +  +++  +        IE  + +L+ L    + E  GD   E + N L   L  +I
Sbjct: 769 KIADLVEEVKPIPDGTFPPVIEGAEEELRKLTLDKAHEIYGDPLPEIVQNRLDRELNSII 828

Query: 469 P 469
            
Sbjct: 829 N 829


>gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 684

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 28/201 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G     DR  + AGVR+ R  E +++ +        +    P  V  TGI+
Sbjct: 101 FVVVDTETTGLRPGPDRVIEVAGVRM-RNGEILDTFQSL---VHPERRIPPFIVRFTGIS 156

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          +      +F        +  +N+ FD  +  +                
Sbjct: 157 PEMLADAPKA-RDIMPDFLRFIE---GATLVGHNLSFDVNFLTHEAQLLGLPFP------ 206

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                + LD +                  G   FKL  +A    I+  N H A  D   T
Sbjct: 207 ----VEGLDTILLSRRLL----------PGLKRFKLDMVAQYLQIQTHNRHRALGDAQVT 252

Query: 185 LALVWLIREKKPKLFEYLYDY 205
             +   + E+      +   +
Sbjct: 253 ADVFARLLERAKIQEIHTLGH 273


>gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c]
 gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c]
          Length = 615

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 61/201 (30%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G         +F  V+V R  E +                 P    +TGI
Sbjct: 51  TFVVFDLETTGTGPTTAEITEFGAVKV-RGGEVVAEFATL---VRASTGIPPLITVLTGI 106

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           AE      +F       ++  +N  FD  + +    R  Y    W   
Sbjct: 107 TDAMLATAP-PLAEVLPAFLEFIQ---GTVLVAHNAGFDLSFLKAACERVGYPVPTWEH- 161

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   LD  R                D + + KL  LA          H A AD  A
Sbjct: 162 --------LDTARLARRI--------VTRDESPNNKLSSLARLFRARTEPCHRALADARA 205

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   L     +
Sbjct: 206 TVDVLHGLFERLGNLGVTTLE 226


>gi|257066105|ref|YP_003152361.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
 gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
          Length = 1365

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 62/206 (30%), Gaps = 28/206 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV++D ET G     DR  +    RV    +  E           + +   + + ITG
Sbjct: 347 ESFVVFDLETTGLSRYKDRITEIGACRV-EGGKITEIYNEL---VNPEMVIPEKIIEITG 402

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       +E      +  F       I+   N  FD  + R   +R   D      
Sbjct: 403 ITNEMVKDCPTIE----EVLPGFLDFCKDSILVGQNTDFDVGFVRENCHRMGLDFNPI-- 456

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    LD +    A   D  +          F L  +A    I   N H A  D  
Sbjct: 457 --------YLDTLPMARALFSDMKK----------FSLDKIARKLEIPAFNHHRASDDAR 498

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208
           AT  +   + +   +         NK
Sbjct: 499 ATAQIFIKMFKMIMEEDGINLSTINK 524


>gi|300173484|ref|YP_003772650.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887863|emb|CBL91831.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 1437

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/408 (12%), Positives = 115/408 (28%), Gaps = 38/408 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V +D ET G     D+  + + V++ +    IE    +       +        +T IT
Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKM-QLGNVIEKFSEY---INPGFPLSDFTTKLTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E    +R  Q+       ++  +N+ FD  +    + R   +        
Sbjct: 475 DTMVAHTD-TEENIIKRFRQWV---GEAVLIGHNVTFDIGFMNAAYARYSQE------SI 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L   R +Y                 S++L  +A    I    AH A  D   T
Sbjct: 525 TNPVIDTLPFTRWLY-------------PDYKSYRLGTIAKRFNINLEQAHRAIFDAETT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             + W + ++    ++ +   +  + + +    ++  P VH + +         L   V+
Sbjct: 572 GHIAWRLIKEANLRYDLVRHEQLNDHMTEGDAWKHGRP-VHATLLVQNDIGLKNLYKLVS 630

Query: 245 WHPRYKD-SVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
                    V     S   +  + L               ++      +K+        +
Sbjct: 631 QSNINFFARVPRIPRSILDQYREGLIIGTGDTSGDVIMTLIEKGRDEALKKAQYYDYIEI 690

Query: 304 MPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P    +         + ++    L  ++     L+       +  YT+    +   +  
Sbjct: 691 QPTANYEPMLESELIANTEKLHAILQEMVSIGDQLKKPVVVTGDVKYTNPEDKIYRDILI 750

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL---PELFFRYRARN 407
                  +    +     P+          D       +L  +    N
Sbjct: 751 -----ATQPGNPQNRTALPKLYFRTTQDLLDDYAFMGEDLAKKLIIDN 793


>gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Acidothermus cellulolyticus 11B]
 gi|117648639|gb|ABK52741.1| DNA polymerase III, epsilon subunit [Acidothermus cellulolyticus
           11B]
          Length = 566

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 25/188 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         + A V+V R  E +   +             P    +TGI
Sbjct: 25  TFVVVDLETTGGAPGTGAITELAAVKV-RGGEVLGELQTL---VNPGRPIPPFITVLTGI 80

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++A     +  F       ++  +N  FD  + R       YD       
Sbjct: 81  TDAMVAPAPPIDA----VLPTFLEFATGSVLVAHNAPFDVGFLRAACAAAGYDW------ 130

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +++LD  R                + A +  L  LA     +    H A ADVYA
Sbjct: 131 ---PEFEVLDTARLARRVL--------TREEAPNCTLATLARVFRAKTTPNHRALADVYA 179

Query: 184 TLALVWLI 191
           T+ ++  +
Sbjct: 180 TIDVLHGL 187


>gi|257458230|ref|ZP_05623380.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
 gi|257444340|gb|EEV19433.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
          Length = 216

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 69/200 (34%), Gaps = 27/200 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+ +D ET G D A  R  +   V+ DR+        V       +     EA  + GIT
Sbjct: 16  FIAFDTETTGLDPAAGRIVEIGAVKFDRRG-IAARYNVL---INPEIPMPEEAGKVNGIT 71

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +     +     FF    T ++  +N  FD  Y      R            
Sbjct: 72  DEMLKDKPL----IAAVFPDFFDFIGTGVLVAHNAPFDINYINAELKRIGKSPL------ 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           GN   D     + ++              G +S+ LQDLA+  GI  + AH A+ D    
Sbjct: 122 GNKVVDTRIFAKEVF-------------PGLSSYALQDLAVQFGITALEAHRAEDDARVC 168

Query: 185 LALVWLIREKKPKLFEYLYD 204
           + L   I  +  K    L +
Sbjct: 169 MELFDKILNRFLKNNPELVE 188


>gi|166032846|ref|ZP_02235675.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC
           27755]
 gi|166027203|gb|EDR45960.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC
           27755]
          Length = 232

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 28/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V +D ET G     +   +   ++V    + ++    F      +    P    +
Sbjct: 1   MLKSYVAFDIETTGLSPEHNEIIEIGALKVRE-GKVVDRFIRF---IEPEAGIPPMITQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT       G    E      +F        +  +N++FD  + +             
Sbjct: 57  TGITNDMVEGAGNC-GEVLPEFLEFCER---DTLIGHNVQFDFSFVKTKAKELG------ 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            +   +   D L + + ++A                S KL  L     IE+V AH A  D
Sbjct: 107 -YTYDHMGIDTLKIAKVVHA-------------DLPSRKLGALCEYYHIENVAAHRAYHD 152

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  L   +     +    ++ 
Sbjct: 153 ALATAKLYQSMAHFYEEKEPKVFK 176


>gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Enterococcus faecalis TX1467]
          Length = 240

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|240146656|ref|ZP_04745257.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82]
 gi|257201200|gb|EEU99484.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82]
          Length = 226

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 69/233 (29%), Gaps = 34/233 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+YD ET G     D   + + V+V R  + ++                  A  +  I+
Sbjct: 17  YVLYDLETTGISSLYDEVIEISAVKV-RNGKIVDEFSEL---VNPGRPIPYAASSVNNIS 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          +       F    +  + G+N   FD  +      + F          
Sbjct: 73  DKMVENA-RSFEKVLPEFLAF--AGDDVLAGHNIAGFDMKFLYRDCEKYF------GQTL 123

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L + +  +                   KL DLA   GI    AH A AD    
Sbjct: 124 TNDYIDTLAIAKLCF-------------PEWKHRKLSDLAEHYGISTKGAHRALADCRMN 170

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
             +  L+ ++            +  Q  + I  +    L   +G FG     T
Sbjct: 171 QQVFELMAKESGG--------TSAKQTEEKICPRCGLALKKRNGRFGGFWGCT 215


>gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1510

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/404 (12%), Positives = 111/404 (27%), Gaps = 49/404 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     ++  +   V+V    E ++    F      +         +T 
Sbjct: 478 DKYVVFDIETTGFSPEKNKIIEIGAVKV-IGGEIVDRYSTF---INPEVPIPFRIEELTS 533

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     +    V  +    + QF      CI+  +N  FD  + +        +      
Sbjct: 534 IRDDMVITSPTV--DVI--LPQFMEFCKDCIMVAHNADFDMSFIKRNCALLGMECNPT-- 587

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   ++D +       P   +          FKL  +A A  I   + H A  D  
Sbjct: 588 --------IVDTVALARVLLPQLNR----------FKLDTVAKALNISLDHHHRAVDDAA 629

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN---KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
            T  +     EK         D  N   K+ +  +  +     ++  +   G +     +
Sbjct: 630 CTAEIFVKFIEKLKDRGISSLDEVNALAKSSVEMIRKMPTYHAIILATCDQGRTNLYRLI 689

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE----V 295
                 H +Y +       S   +    L      +        L G     I       
Sbjct: 690 ---SLSHIKYYNKRPRIPKSEFNKYRDGLLIGSACEAGELYRAILNGRPQEEITRLVNFY 746

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
              +   L    +  ++       +      N  +++          A  +  + +   +
Sbjct: 747 DYLEIQPLGNNAFMIRDEDSDIASNDDLIDINKRIVKLGEEFGKLVVATCDVHFLNPEDE 806

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           +  ++                     ++ + L L  ++  L E 
Sbjct: 807 IYRRIIMAGKGFK-----------DADEQAPLYLRTTEEMLKEF 839


>gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 1465

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/450 (11%), Positives = 109/450 (24%), Gaps = 40/450 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHNLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++      +        +    L      +          +              
Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L       ++  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEK 415
             L  G   +      +         L   +   ++  L E  F  +  A       ++ 
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 416 EKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443
                   E  K  L    I++ +  +  L
Sbjct: 816 MADRIEEVEVVKGDLYTPYIDKAEETVAEL 845


>gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 1465

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/450 (11%), Positives = 109/450 (24%), Gaps = 40/450 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHNLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++      +        +    L      +          +              
Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L       ++  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEK 415
             L  G   +      +         L   +   ++  L E  F  +  A       ++ 
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 416 EKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443
                   E  K  L    I++ +  +  L
Sbjct: 816 MADRIEEVEVVKGDLYTPYIDKAEETVAEL 845


>gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
 gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
          Length = 1269

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 98/366 (26%), Gaps = 35/366 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D   +   V+V    +  +    F      +     E   +T 
Sbjct: 454 DTYVVFDIETTGFSAVEDHIIEIGAVKV-ENGKITDKYSTF---VNPEVPIPFEITQLTS 509

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     +    +  +    + QF        +  +N  FD  +                 
Sbjct: 510 IDDSMVMDAPKI--DVI--LPQFLEFVGDASLVAHNAGFDVGFIEQNC----------KN 555

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N    +  +D +       P   +          +KL  +A A  I   N H A  D  
Sbjct: 556 LNIEQEFVSVDTVALARVLLPTLSK----------YKLNIVAKALNISLENHHRAVDDAG 605

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIA 241
           AT  +     E   +         N         ++ M      +       R N   + 
Sbjct: 606 ATAEIFVKFVEMLKEREITTLKGVNAFGATNPDAVKKMPTYHAIILAKNDVGRVNLYRLI 665

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI-KEVHLNKC 300
            +  H  Y         S   R  + L      +        L       I + V     
Sbjct: 666 SL-SHLTYYARRPRIPKSEFNRYREGLLIGSACEAGELYQAVLNNKSDETIARLVEFYDY 724

Query: 301 PILMPI--DYCKKEHFERWGIDHKRCLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
             + P+  +    +  +   I     L+  N  +++          A  +  +  +  +V
Sbjct: 725 LEIQPLGNNQFMVDSPKYSQIRSDEDLKDINRKIVKLGEEFHKPVVATCDVHFLDAEDEV 784

Query: 357 DSQLYD 362
             ++  
Sbjct: 785 YRRIIM 790


>gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514]
 gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1407

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/481 (13%), Positives = 140/481 (29%), Gaps = 53/481 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + F ++D ET G     D   +   V++ ++ + I++ E F                +
Sbjct: 390 LEDEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKL 445

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI          +E E   +  +F    N+ ++ +N      +        N   +   
Sbjct: 446 TGIDESMVKDAPSIE-EILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNVNNA- 501

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     +LD +        D            ++KL  LA    ++  + H A  D
Sbjct: 502 ----------VLDTLELSRHLYKDL----------KNYKLDTLAEHLQVKLEHHHRAVDD 541

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +     ++  +L        N       +DI+ + P+ HV+ +    +    L 
Sbjct: 542 AMATAEIFIKTIDRLKELGVEKVKDINAILKESEVDIRKL-PVYHVTILVKDQKGLRNLY 600

Query: 241 APVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LN 298
             ++  +  Y         S  +   + L      ++       +  L    ++ +    
Sbjct: 601 EIISKSNLEYFHRTPRIPKSLLISRREGLIIGSACEQGEVFRAIVSNLEEKKLENIISFY 660

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
               + P+   +    +      +   E    +       ++        +     D   
Sbjct: 661 DYLEVQPVGNNEFLIGKGEVKSVEELREINRKIYLLGKKYNKLIVATGDVHFLDPWDDIY 720

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           +                      ++   L    +D  L E  F Y        +      
Sbjct: 721 RKILMAGKGYK----------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNPN 768

Query: 419 DWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +  +++  +        IE  + +L+ L    + E  GD   E + N L   L  +I
Sbjct: 769 KIADLVEEVKPIPDGTFPPVIEGAEEELRRLTLDKAHEIYGDPLPEIVQNRLDRELNSII 828

Query: 469 P 469
            
Sbjct: 829 N 829


>gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152]
 gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152]
          Length = 598

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 60/200 (30%), Gaps = 25/200 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     D   +   V+V R  E +                 P  V +TGI
Sbjct: 26  TFVVVDLETTGTSPEGDAITEIGAVKV-RGGEVLGEFATL---VNPGRAIPPAVVQVTGI 81

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +EA     +  F       ++  +N RFD  + R    R           
Sbjct: 82  TTALVYAAPRIEA----VLPGFLEFAAGAVLVAHNARFDTAFLRAAAARCALPW------ 131

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  +L  ++                D A S +L  LA   G      H A  D  A
Sbjct: 132 ---PDAPVLCTVKLARRVLG--------RDEAPSVRLASLARLLGASTQPTHRALDDARA 180

Query: 184 TLALVWLIREKKPKLFEYLY 203
           T+ ++  +  +      +  
Sbjct: 181 TVDVLHALIARVGNQGVHSL 200


>gi|229820392|ref|YP_002881918.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM
           12333]
 gi|229566305|gb|ACQ80156.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM
           12333]
          Length = 590

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 59/200 (29%), Gaps = 25/200 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G     D   +   VRV R                      P    +TGIT
Sbjct: 32  FVVVDLETTGGSPNADAITEIGAVRV-RGGVVEGELGTL---VDPGRSIPPTITVLTGIT 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +    +E      +  F    +  ++  +N RFD  + R    R            
Sbjct: 88  NAMVIGAPPIE----EVLPSFLEFAHGAVLVAHNARFDTGFLRVAAERMGLTWP------ 137

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + R +              D A + +L  LA          H A  D  AT
Sbjct: 138 KPLVVDTVQLARRV-----------VSRDEAPNHRLGSLARLFHASVTPDHRALTDARAT 186

Query: 185 LALVWLIREKKPKLFEYLYD 204
           + ++  +  +   L     +
Sbjct: 187 VDVLHGLLARMAPLGVTHLE 206


>gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
 gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
          Length = 565

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 56/196 (28%), Gaps = 28/196 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   A DR  + A VRV +    +E                P    +TGI
Sbjct: 7   SFVVVDTETTGSGPA-DRIIELAAVRV-QGGRIVERFATL---INPGRSVPPFITRLTGI 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +       E       F       ++  +N+ FD         R           
Sbjct: 62  TTAMLVGRP-SADEVLPDFLDFLGDG---VLVAHNLAFDRKMLEAELQRIGLAWPGNP-- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L  +R                 G  +  L  L     I   N H A  D  A
Sbjct: 116 -------ALCTLRLARRLL----------PGLPAKGLDGLIRFYQIPVENRHRALGDAEA 158

Query: 184 TLALVWLIREKKPKLF 199
           T  ++  + E+  + +
Sbjct: 159 TAHVLLRLLEEARRQY 174


>gi|152967191|ref|YP_001362975.1| hypothetical protein Krad_3247 [Kineococcus radiotolerans SRS30216]
 gi|151361708|gb|ABS04711.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 601

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 22/218 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   A     +   V+V R  + +   +                  +TGI
Sbjct: 27  TFVVVDLETTGGAPADAGITEIGAVKV-RGGQVLGEFQTL---VRPSSPIPAFVQVLTGI 82

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           A+      +F       ++  +N  +D  + +                
Sbjct: 83  TNGMVATAP-SLAQVLPAFLEFAGFERGTVLVAHNAPYDTSFLKAACQVTGRPWP----- 136

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + + R +              D A   KL  LA   G      H A  D  A
Sbjct: 137 -KPRVVDTVVLARQL-----------VDRDEAPDRKLGTLARLFGTATTPDHRALHDARA 184

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           T+ ++  +  +      +  +  +      +  ++   
Sbjct: 185 TVDVLHALLGRVGNRGVHSLEDLSAFAATAVNPVRRAK 222


>gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180]
 gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180]
          Length = 1465

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 95/404 (23%), Gaps = 36/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQDA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++      +        +    L      +          +              
Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L        +  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             L  G   +      +         L   +   ++  L E  F
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270]
 gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270]
          Length = 1465

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 96/404 (23%), Gaps = 36/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQDA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +    L      +          +              
Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L        +  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             L  G   +      +         L   +   ++  L E  F
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862]
          Length = 1440

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 92/322 (28%), Gaps = 27/322 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G     D+  + + V++  +   I     F       +      V +T IT
Sbjct: 424 FVVFDVETTGLSAVYDKVIELSAVKM-VKGNVIAEFSEF---IDPGFPLSQTTVDLTSIT 479

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E +      +F       ++  +N+ FD  + +  + R+           
Sbjct: 480 DDMVRGS-KPEKQVFEEFREF---YGDAVLVGHNVTFDMGFMQEGYARHQLAPI------ 529

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L + R +Y                 S++L  LA   GI     H A  D   T
Sbjct: 530 TNPVIDTLILARFLY-------------PNMRSYRLNTLAKHFGIVLEQHHRAIFDSETT 576

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L  +  E+  + +   Y  +  + +      ++  P   +  +   +           
Sbjct: 577 GHLNRVFLEQAREEYGIEYADQLNDHMMDNDAWRHGRPNHAIVLVQTQTGVKNLYKMISE 636

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            + +Y   V     S   +  + L               ++       ++        + 
Sbjct: 637 SNTKYLQRVPRVPRSLLNKYREGLLLGTGDNTGEFWEALMQKGYAAAKEKATYYDYIEIQ 696

Query: 305 PIDYCKKEHFERWGIDHKRCLE 326
           P              D  R  E
Sbjct: 697 PSANYVPALEAELIQDEARLRE 718


>gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parauberis NCFD 2020]
 gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parauberis NCFD 2020]
          Length = 1465

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/406 (12%), Positives = 106/406 (26%), Gaps = 40/406 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-YKGNILEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +     + + +F +     ++  +N  FD  +    + R           
Sbjct: 482 TDNHLVGAKPLH----QVLVEFQAFCKDTVLVAHNASFDVGFMNANYARENLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVALDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKP--KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  +          L D   K           +             ++   L++
Sbjct: 579 TGRLLFIFLKDAREKHNVTNLLDLNTKLVAEDSYKKARVKHATIYVQNQVGLKNMFKLVS 638

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +  Y + V     +   +  + L               L   V   ++        
Sbjct: 639 --LSNVVYFEGVPRIPRTILDQYREGLLLGSACSEGEVFDTVLNKGVDAAVEVGKYYDFI 696

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQD 355
            +MP    +         D +   + +  L        +  L                + 
Sbjct: 697 EIMPPAIYQPLIARELIKDQEGIHQIIRDLIEVGARLNKPVLVTGNVHYIEPEDEIYREI 756

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
           +   L  G   +      +         L   +   ++  L E+ F
Sbjct: 757 IVRSLGQGAIINRTIGRGEGAQPAP---LPQAHFRTTNEMLDEMAF 799


>gi|291537849|emb|CBL10960.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 226

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 69/233 (29%), Gaps = 34/233 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+YD ET G     D   + + V+V R  + ++                  A  +  I+
Sbjct: 17  YVLYDLETTGISSLYDEVIEISAVKV-RNGKIVDEFSEL---VNPGRPIPYAASSVNNIS 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          +       F    +  + G+N   FD  +      + F          
Sbjct: 73  DKMVENA-RSFEKVLPEFLAF--AGDDVLAGHNIAGFDMKFLYRDCEKYF------GQTL 123

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L + +  +                   +L DLA   GI    AH A AD    
Sbjct: 124 TNDYIDTLAIAKLCF-------------PEWKHRRLSDLAEHYGISTKGAHRALADCRMN 170

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
             +  L+ ++            +  Q  + I  +    L   +G FG     T
Sbjct: 171 QQVFELMAKESGG--------TSAKQTEEKICPRCGLALKKRNGRFGRFWGCT 215


>gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
 gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
          Length = 175

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 27/190 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREK 194
             L+ LI+EK
Sbjct: 166 AELLLLIQEK 175


>gi|257869632|ref|ZP_05649285.1| DNA polymerase III [Enterococcus gallinarum EG2]
 gi|257803796|gb|EEV32618.1| DNA polymerase III [Enterococcus gallinarum EG2]
          Length = 920

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 71/204 (34%), Gaps = 27/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   + + D ET G D A+DR  QF  V + +  + I            D     +   +
Sbjct: 1   MKPIYAVVDLETTGTDPAIDRIIQFGCVLI-QDGQVINRFAT---DINPDRRISKQIQNL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT Q+  R    E + +  I+   +     +   +NI FD ++      R    S   
Sbjct: 57  THITNQQVKRAPYFE-DVAHTIYNLLTQ---TVFVAHNIYFDYHFLSQELIRCGMPSLE- 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D +     F              +SF+L DLA + G  H N H A +D
Sbjct: 112 --------IPGIDTVELAQVFL----------PTESSFRLGDLAESIGFVHENPHQADSD 153

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
              T AL+  I     +L      
Sbjct: 154 AEVTAALLLYIESIMRELPWVTLK 177


>gi|331082627|ref|ZP_08331750.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400246|gb|EGG79888.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 1487

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/414 (13%), Positives = 104/414 (25%), Gaps = 48/414 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  +   V+V       E    F                +T I 
Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKV-ENGRITERFSEF---VNPQIPIPFRIEELTSIN 518

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    ++     +  +F      C++  +N  FD  + R  +     +        
Sbjct: 519 DNMVADAPTIDV-ILPKFEKF---CEGCVMVAHNAEFDMSFIRKNYEDIGIE-------R 567

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            ++  D + + R                     FKL  +A A G+   + H A  D   T
Sbjct: 568 EDTVVDTVGMAR-------------FLLPQLNRFKLDTVAKAVGVSLEHHHRAVDDASCT 614

Query: 185 LALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
             +    I     +    L +   K  +      +  T    +       R N       
Sbjct: 615 ADIFVKFIEMCAERDIFNLDELNEKGTVSVHSIQKMPTYHAIILAKNDVGRVNLY-HLIS 673

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KEVHLNK 299
             H  Y         S  ++  + L      +        L G     I          +
Sbjct: 674 DSHLIYYHRRPRIPKSLFLKYQEGLLIGSACEAGELYQAVLNGRPEQEIARLVNFYDYLE 733

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
              L    +  K          +   E N  +++             +  +     +V  
Sbjct: 734 IQPLGNNAFMLKNEDRSDITSWEDLQEINKKIVKLGEAFNKPVVGTCDVHFLDPEDEVYR 793

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL 412
           ++                     +  + L L  ++  L E    Y  R     +
Sbjct: 794 RIIMAGKGFD-----------DADDQAPLYLRTTEEMLKEFS--YLGREKAEEI 834


>gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           carboxidivorans P7]
 gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           carboxidivorans P7]
          Length = 1449

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/481 (12%), Positives = 144/481 (29%), Gaps = 58/481 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G    +++  +   +++ +  + I+      C         P  V +T I
Sbjct: 425 TYCVLDLETTGFSPVIEKITEIGIMKI-KDGKVIDKFS---CFVNPKKPIPPRVVEVTNI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E +   ++  F       ++  +N  FD  + ++      YD       
Sbjct: 481 TDDMVRDAETIE-QVFPKMLDFIKDS---VLVAHNAEFDIGFLKHNARVLGYDF------ 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + +                    ++KL  +A   GI+   AH A  DV  
Sbjct: 531 -DFTYLDTLTLAQ-------------ELFPDFKTYKLGRIAKNLGIKVEVAHRALDDVDT 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNTA 238
           T+ +  ++ EK  +         +     +    +    L     +  A      ++   
Sbjct: 577 TVKIFNVMLEKLKERGAETLQDVDVYGSDEAAKKEEYKKLKTYHAIILAKDYVGLKNLYK 636

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
           L++       YK   I  ++         L S      L+ +   L              
Sbjct: 637 LVSYSHLDYFYKKPRILKSMYKKYSEGLILGSACSEGELYQA-ILLGKSDEQIEAIAQDY 695

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
               + P+        +    + +   + N  ++           A  +  +     ++ 
Sbjct: 696 DYLEIQPLGNNDYLVRQEQVPNKEYLKKINKKIIALAEKFNKPVVATGDVHFMDPEDEIY 755

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
            ++ +                   +  + L L  ++  L E    Y      + +     
Sbjct: 756 RRILEAGQGFK-----------DADNQAPLYLRTTEEMLQEFS--YLGEEKAYEVVVTNT 802

Query: 418 QDWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWV 467
               +  +++  ++  +    I+  +  ++ +    + E  GD   E +   L + L+ +
Sbjct: 803 NKIADMCEQISPISPEKCPPHIDGCEQTIKDIAYEKAHELYGDPLPEIVQTRLDKELESI 862

Query: 468 I 468
           I
Sbjct: 863 I 863


>gi|291537711|emb|CBL10823.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 226

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 69/233 (29%), Gaps = 34/233 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+YD ET G     D   + + V+V R  + ++                  A  +  I+
Sbjct: 17  YVLYDLETTGISSLYDEVIEISAVKV-RNGKIVDEFSEL---VNPGRPIPYAASSVNNIS 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          +       F    +  + G+N   FD  +      + F          
Sbjct: 73  DKMVENA-RSFEKVLPEFLAF--AGDDVLAGHNIAGFDMKFLYRDCEKYF------GQTL 123

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L + +  +                   +L DLA   GI    AH A AD    
Sbjct: 124 TNDYIDTLAIAKLCF-------------PEWKHRRLSDLAEHYGISTKGAHRALADCRMN 170

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
             +  L+ ++            +  Q  + I  +    L   +G FG     T
Sbjct: 171 QQVFELMAKESGG--------TSAKQTEEKICPRCGLALKKRNGRFGGFWGCT 215


>gi|315497459|ref|YP_004086263.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
           48]
 gi|315415471|gb|ADU12112.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
           48]
          Length = 717

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 65/190 (34%), Gaps = 28/190 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G   A +R  +   V++ R  E I++ +        +    P    +TGI+
Sbjct: 545 YTVVDIETTGGQSANERVTEIGAVKI-RNGEIIDTWQSL---INPERRIPPFITELTGIS 600

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +     F       +   +N+ FD  +    + R            
Sbjct: 601 NAMVRDAPR-FADIADDFDAFLK---GTVFVAHNVNFDYGFLSAEYRRLERP-------- 648

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R+  +  + ++    P              + L  L+   GIE  N H A +D  A 
Sbjct: 649 --FRYPKMCTVASMRRHFPGLAA----------YGLGPLSREFGIELKNHHRALSDAMAA 696

Query: 185 LALVWLIREK 194
             L+ LI E+
Sbjct: 697 AELLKLINER 706


>gi|331084769|ref|ZP_08333857.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410863|gb|EGG90285.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 238

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 64/205 (31%), Gaps = 32/205 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V +D ET G     D   +   V+V    +  +    F           P    I
Sbjct: 1   MIKTYVAFDLETTGLSEERDSIIEIGAVKV-TDGKVTDRFMEF---LKPAEEISPMITQI 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +        +A     I  F       ++  +NI FD  + +          Y  
Sbjct: 57  TGITNEMVAHARNTKA----VIDDFMGFCGEEVLLGHNILFDYKFMKR---------YAC 103

Query: 121 SWDNGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            + +   R   D L + R ++                 S  L+ L     I++  AH A 
Sbjct: 104 KYQHSFERRGIDTLKIARKVH-------------KDLESRSLEALCAHYQIKNDAAHRAY 150

Query: 179 ADVYATLALVWLIREKKPKLFEYLY 203
            D  AT  L   +     +    L+
Sbjct: 151 HDALATAKLYHCLGHYFEEKEPNLF 175


>gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
           2_A_57_CT2]
 gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
           2_A_57_CT2]
          Length = 933

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 71/209 (33%), Gaps = 28/209 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M N +V+ D ET G      D+  QFA V +    +  E           +    P    
Sbjct: 1   MGNKYVVVDLETTGNAPKKGDKIIQFAAVVI-ENGKITEEYSSL---VNPEQSIPPFIEE 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TG++ +      +  +E + ++              +N+ FD  + +       Y    
Sbjct: 57  LTGLSDEMVENAPL-FSEIAPKVLTLLE---GAYFVAHNVLFDLSFLQEELIEAGY---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                      +LD +                   A SFKL DLAL  G+ H   H A +
Sbjct: 109 -----NGFYGPVLDTVEMARILF----------PTADSFKLSDLALREGLNHERPHQADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK 208
           D Y T  L+ ++  K   L     D  +K
Sbjct: 154 DAYVTAELLLILLNKLKNLPHNTIDLLHK 182


>gi|296129915|ref|YP_003637165.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM
           20109]
 gi|296021730|gb|ADG74966.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM
           20109]
          Length = 631

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   A D   +   V+V R  E +   +             P    +TGI
Sbjct: 63  TFVVVDLETTGGRAAEDAITEIGAVKV-RGGEVLGEFQTL---VDPGGPVPPFIQVLTGI 118

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +  E      +F       ++  +N  FD  +           +     +
Sbjct: 119 TTSMLVGAPTI-GEVLPSFLEF---ARGAVLVAHNAPFDVGF---------LRAAAARSE 165

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + ++D +R                D A + KL  LA   G      H A AD  A
Sbjct: 166 RAWPGFQVVDTVRLARRV--------VLRDEAPNHKLSTLAALFGATVTPNHRALADARA 217

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  +  +   L     +
Sbjct: 218 TVDVLHALLGRLAPLGVTHLE 238


>gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2]
          Length = 581

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 65/201 (32%), Gaps = 24/201 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FVI D ET G         +   V+  R  E +   +    KP ++ +  P    +TGI
Sbjct: 30  TFVIVDLETTGTTAGKSEITEIGAVKT-RGGEVLGEFQSL-VKP-EESVISPFVARLTGI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                 +  F       ++  +N  FD  + R+   +  Y   + +  
Sbjct: 87  THAMVDDAPS----IRSVLPSFLEFCVGAVLVAHNAPFDIGFIRSACEKLDYHWPQPT-- 140

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + + R +              D   + KL  LA   G E    H A +D  A
Sbjct: 141 ----VLDTVTLSRRV-----------VSRDEVRNHKLSTLAAHFGTEVSPDHRALSDAKA 185

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  ++  + E+         +
Sbjct: 186 TGEVLHRVLERFGGYGITTLE 206


>gi|332143320|ref|YP_004429058.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 715

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 28/196 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G + + +R  +   V++    ++++  +                  +TGI+
Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKL-VGGKEVDRFQTL---LNPQRRIPSSITRLTGIS 598

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +  AE +  I  F       +   +N+ FD  + +  F R            
Sbjct: 599 DDMVADAPL-FAEVADHIASFTED---AVFVAHNVNFDYGFIKQEFARLEQ--------- 645

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            + R   +  +R +               G +S+ L +L     I+    H A +D  A 
Sbjct: 646 -SFRRPKMCTVREMR----------RTHPGLSSYSLANLTKHFHIDMEQHHRALSDAKAA 694

Query: 185 LALVWLIREKKPKLFE 200
             L+ L  EK  + F 
Sbjct: 695 AELLKLAFEKDDEGFS 710


>gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans
           CB1190]
          Length = 586

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 62/201 (30%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   A     +   V+V R  E +                 P  V +TGI
Sbjct: 30  TFVVLDLETTGGSSANHSITEIGAVKV-RGGEVLGELATL---VDPGTGVPPGVVALTGI 85

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           A+    + +F       ++  +N  FD  + R    R+          
Sbjct: 86  TTAMVTGAPR-LAQVLPTLLEFM---GGAVLVAHNAPFDAGFLRAACERHDRRW------ 135

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R   L   R   A              A S +L  LA   G      H A AD  A
Sbjct: 136 ---PRPPQLCTARLARAVL--------SRAEAPSVRLGALARLFGTATQPTHRALADARA 184

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   L     +
Sbjct: 185 TVEVLHRLLERVGNLGVQSLE 205


>gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
 gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
          Length = 483

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 57/188 (30%), Gaps = 28/188 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F   D ET G + + DR  +   +R  R    +   +        +    P    +TGI
Sbjct: 12  TFAFLDIETTGGNPSHDRITEIG-IRFWRAGAVVGEWQTL---VNPETRISPFIESLTGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        V E + +  + +        I   +N RFD  + +  F R           
Sbjct: 68  TNDMVADAPVFE-DIAEVLEKQLKD---TIFVAHNARFDYGFIKAEFRRLGL-------- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  +L  ++                 G     +  L   +G+E V  H A  DV A
Sbjct: 116 --LFSAKVLCTVKLSRKLY----------PGFRRHNMDALIERHGLEQVQRHRALGDVAA 163

Query: 184 TLALVWLI 191
            +A     
Sbjct: 164 MMAFFEHA 171


>gi|260589219|ref|ZP_05855132.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260540300|gb|EEX20869.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 1487

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/414 (13%), Positives = 104/414 (25%), Gaps = 48/414 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  +   V+V       E    F                +T I 
Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKV-ENGRITERFSEF---VNPQIPIPFRIEELTSIN 518

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    ++     +  +F      C++  +N  FD  + R  +     +        
Sbjct: 519 DNMVADAPTIDV-ILPKFEKF---CEGCVMVAHNAEFDMSFIRKNYEDIGIE-------R 567

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            ++  D + + R                     FKL  +A A G+   + H A  D   T
Sbjct: 568 EDTVVDTVGMAR-------------FLLPQLNRFKLDTVAKAVGVSLEHHHRAVDDASCT 614

Query: 185 LALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
             +    I     +    L +   K  +      +  T    +       R N       
Sbjct: 615 ADIFVKFIEMCVERDIFNLDELNEKGTVSVHSIQKMPTYHAIILAKNDVGRVNLY-HLIS 673

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI----KEVHLNK 299
             H  Y         S  ++  + L      +        L G     I          +
Sbjct: 674 DSHLIYYHRRPRIPKSLFLKYQEGLLIGSACEAGELYQAVLNGRPEQEIARLVNFYDYLE 733

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
              L    +  K          +   E N  +++             +  +     +V  
Sbjct: 734 IQPLGNNAFMLKNEDRSDITSWEDLQEINKKIVKLGEAFNKPVVGTCDVHFLDPEDEVYR 793

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL 412
           ++                     +  + L L  ++  L E    Y  R     +
Sbjct: 794 RIIMAGKGFD-----------DADDQAPLYLRTTEEMLKEFS--YLGREKAEEI 834


>gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 1415

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 66/399 (16%), Positives = 120/399 (30%), Gaps = 41/399 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V++D ET G     D+  +   V++       E             L   +   +T 
Sbjct: 399 NTYVVFDIETTGLSPIRDKITEIGAVKI-VDGIITERFSQL---INPQMLIPEKVQELTR 454

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT      +  +E E + + + F       ++  +N +FD  + R +F  N  D      
Sbjct: 455 ITNALVENEPTIE-EVAPKFYDFIKDS---VLVAHNAKFDTAFIRRVFKENDLDFI---- 506

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L   RA                    F L  L    G+  V AH A  D  
Sbjct: 507 ---NPILDTLSFARA-------------TVKDTKKFNLATLCKKFGVSLVGAHRAVNDAE 550

Query: 183 ATLALVWLIRE--KKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           AT  L   +      PK  ++      K+Q+   I  ++   ++  +      ++   L+
Sbjct: 551 ATAHLFIKLINKIFDPKHIDFNKLNSLKSQIEPEILFESSLSIL--TKNEEGLKNLYKLV 608

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +    +   + + +  +L    R    + S   +  +F +      +  V  K       
Sbjct: 609 SDSHMNYFNRVAKVPRSLINKYRKGLLIGSGDESGEIFNAFFRNLEIDEVE-KIASFYDY 667

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             + PID                   N  + +   NL     A  N  Y     D+  ++
Sbjct: 668 LEIQPIDNFIPSLLRNKLTREDIIEINKKICKVGENLGIPVIATSNCFYLDEKDDLVRRI 727

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
                          +     +    L    +D  L E 
Sbjct: 728 IL--------NGKVGVPDYNAKIKQKLYFKSTDLMLEEF 758


>gi|148255092|ref|YP_001239677.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1]
 gi|146407265|gb|ABQ35771.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1]
          Length = 720

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 61/190 (32%), Gaps = 28/190 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G   + DR  +   V+V R  + +E                 + V +TGIT
Sbjct: 546 YVVVDIETTGSWSSGDRITEIGAVKV-RNHQIVEEWHSL---INPQRPIPAKIVELTGIT 601

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q          + +     F       I   +N+ FD  +    + R            
Sbjct: 602 NQMVRDAP-FFHDIADSFIAFMGDG---IFVAHNVNFDYGFLSYEYERLER--------- 648

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R+  L     +            R  G  S+ L  L    GI   + H A  D  A 
Sbjct: 649 -RFRFPKLCTCVGMR----------RRYPGHKSYGLGKLCAIYGIALDDHHRALCDARAA 697

Query: 185 LALVWLIREK 194
             L+ LI +K
Sbjct: 698 ARLLHLINKK 707


>gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus pyogenes M49 591]
 gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131]
 gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131]
          Length = 1465

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 97/404 (24%), Gaps = 36/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQDA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +    L      +          +              
Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L       ++  L                + + 
Sbjct: 699 MPPAVYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             L  G   +      +         L   +   ++  L E  F
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1472

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/403 (13%), Positives = 113/403 (28%), Gaps = 46/403 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + + + D ET G    L++  +   ++V +  + I+    F      +    P  V +T 
Sbjct: 444 DIYCVLDLETTGFSPKLEKITEIGIMKV-KDGKVIDKFSTF---VNPEKPIPPRVVEVTN 499

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++    +   +        I+  +N  FD  + R+      +D      
Sbjct: 500 ITDDMVRNAETID----KVFPKMLEFIEGSILVAHNAEFDIGFLRHYAKVLGHDF----- 550

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               +  D L + +                    S+KL  +A   GI+   AH A  DV 
Sbjct: 551 --DFTYLDTLSLAQ-------------DLFPQYKSYKLGRIAKNLGIKVEVAHRALDDVD 595

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNT 237
            T+ +  ++ +   +               +         L     +  A      ++  
Sbjct: 596 TTVKVFNVMIDMLKERGAKTLSDIETYACDEESKKVQYKKLRTHHAIILAKDYTGLKNLY 655

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297
            L++       YK   I  ++         L S      LF S   L             
Sbjct: 656 KLVSYSHLDYFYKKPRILKSMFKKYSEGLILGSACSEGELFQS-ILLGKSDEEIENIAKD 714

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
                + PI             + +   E N  ++     L     A  +  +     ++
Sbjct: 715 YDYLEIQPIGNDDYLIRNEQVPNKEYIKEINRKIISLGEKLGKLVVATGDVHFMDPEDEI 774

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
             ++ +                   +  + L L  ++  L E 
Sbjct: 775 YRRILEAGQGFK-----------DADMQAPLYLKTTEEMLEEF 806


>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1459

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 66/491 (13%), Positives = 126/491 (25%), Gaps = 67/491 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G D   D+  +   V++ R  E I     F      +     +   +T IT
Sbjct: 425 YVVFDIETTGFDPFNDKIIEIGAVKM-RGREVIGEFSEF---VNPEIPIPQKITELTTIT 480

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       +E      + +F        +  +N +FD  + +        +        
Sbjct: 481 DEMVANAEKIE----TVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLE-------Y 529

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S  D L + R                     + L +L    GI     H A  D  AT
Sbjct: 530 SPSVIDTLPLART-------------LLPELRGYGLANLVKYFGITLETHHRAVDDAKAT 576

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +                   N +    + + + +  ++ V    G       +     
Sbjct: 577 AEVFQKFLNMILSKGILKLIEINTDLQPNIQNSETLNTMILVKNQAGLRDLYELV----- 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              R      G       +   +     L      S  E      V +      K  I  
Sbjct: 632 --SRSHIEFFGKRRPRIPKSLLNSMRENLLIASSASASERNRGELVNLYLRGTEKDDIEE 689

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN---------------KPY 349
              +              R  +    +     +R+  K  Y                   
Sbjct: 690 KAKFYDYIEIHPTANYTDRVEKRSKEIENYDIIREMNKYFYELGKKLNKIVVATGDTHYL 749

Query: 350 TSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFP 409
                   + L  G       ++ + +          L    ++  L E  F+Y      
Sbjct: 750 EEREVINRNVLLLGSGTMWKTEVAEGVKEYEFFDR-KLYFKTTEEMLEE--FKYLGEETA 806

Query: 410 HTLSEKEKQDWLEHRKKM------LTRSRIEEY--------KNKLQSLSGEYKGDEGKEG 455
             +  +      +  +++          +IE           +KL+ L GE    + KE 
Sbjct: 807 QEVVVENTHRISDMIEQVRPIPTGFYPPKIEGAEDEVRKMTYSKLKELYGENIDPDLKER 866

Query: 456 LINALYEYLQW 466
           +   L   +Q 
Sbjct: 867 VEKELNSIIQN 877


>gi|332522391|ref|ZP_08398643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313655|gb|EGJ26640.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 1466

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/454 (13%), Positives = 124/454 (27%), Gaps = 48/454 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 427 TYVVFDVETTGLSAINNDLIQIAASKM-YKGNIIEQFDEF---INPGHPLSSFTTELTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +          + +  F +     I+  +N  FD  +    + R+          
Sbjct: 483 TDNHLIGAKT----LLQVLEAFQAFCQDAILVAHNASFDVGFMNANYERHHLPLI----- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 534 -KQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 579

Query: 184 TLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++  +      L D   K           +             ++   L++
Sbjct: 580 TGRLLFIFLKEAREKHGLTNLLDLNTKLVAEDSYKKARVKHATIYVQNQIGLKNIFKLVS 639

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     +   +  + L               L   V    +  +     
Sbjct: 640 --LSNVKYFEGVPRIPRTVLDQHREGLLLGTACSEGEVFDAVLTKGVEAATELANYYDFI 697

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP    +         D +   +  L L+     L     A  N  Y    + +  ++
Sbjct: 698 EIMPPALYQPLIARELIKDQEGVQKAILDLIEVGKRLNKPVLATGNVHYIEPEEAIYREI 757

Query: 361 YDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPHT 411
                                 P  L   +   ++  L        EL ++   +N    
Sbjct: 758 IVRSLGQGAMINRPIGRGEGAQPAPLPEAHFRTTNEMLDDFAFLGKELAYQVVVQN---- 813

Query: 412 LSEKEKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443
            ++         E  K  L    I++ +  +  L
Sbjct: 814 -TQDFADRIEEVEVVKGDLYTPFIDKAEETVAEL 846


>gi|229544028|ref|ZP_04433087.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
           36D1]
 gi|229325167|gb|EEN90843.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
           36D1]
          Length = 930

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 76/244 (31%), Gaps = 37/244 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +V+ D ET G      DR  QF+ V V    E       F      +    P    +
Sbjct: 1   MQRYVVVDLETTGNSAKKGDRIIQFSAVVV-EGREIKTQFTSF---VNPEKPVPPFISEL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI         V  +E + RI +        I   +N+ FD  + +       +     
Sbjct: 57  TGIDNGMLEEAPV-FSEIAPRIMEILEDS---IFVAHNVLFDLPFLQQELKAAGFPP--- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R   LD +       P             S+KL DLA +  + H   H A +D
Sbjct: 110 ------FRGPSLDTVEFSRIAFPTLN----------SYKLGDLADSLSLYHERPHRADSD 153

Query: 181 VYATLALVWLIREKKPKLFEYLYD------YRNKNQLRKLIDI---QNMTPLVHVSGMFG 231
            + T  L+    EK   L     +      Y  KN L  + +    +    + H+     
Sbjct: 154 AFVTAKLLLACMEKCASLPVVTLEQLVPLSYSLKNDLAGIFEDILEEKRRHIEHLPPDME 213

Query: 232 ASRS 235
             R 
Sbjct: 214 VYRG 217


>gi|325661635|ref|ZP_08150259.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472162|gb|EGC75376.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 238

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 64/205 (31%), Gaps = 32/205 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V +D ET G     D   +   V+V    +  +    F           P    I
Sbjct: 1   MIKTYVAFDLETTGLSEERDSIIEIGAVKV-TDGKVTDRFMEF---LKPAEEISPMITQI 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +        +      I  F       ++  +NI FD  + +          Y  
Sbjct: 57  TGITNEMVAHARNTK----EVIDDFMGFCGEEVLLGHNILFDYKFMKR---------YAC 103

Query: 121 SWDNGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            + +   R   D L + R ++                 S  L+ L +   I++  AH A 
Sbjct: 104 KYQHSFERRGIDTLKIARKVH-------------KDLESRSLEALCVHYQIKNDAAHRAY 150

Query: 179 ADVYATLALVWLIREKKPKLFEYLY 203
            D  AT  L   +     +    L+
Sbjct: 151 HDALATAKLYHCLGHYFEEKEPNLF 175


>gi|288922213|ref|ZP_06416412.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
 gi|288346447|gb|EFC80777.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
          Length = 565

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 62/201 (30%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   A     +   V+V R  + +                 P    +TGI
Sbjct: 28  TFVVVDLETTGGSPATSEITEIGAVKV-RGGQVLGEMSSL---VRASTPIPPVVSVLTGI 83

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E      +F       ++  +N  FD  + R       Y    W   
Sbjct: 84  TDSMLATAP-TLDEVVPTFLEF---SRGAVLVAHNAAFDLGFLRAAAQACGYPVPAWEH- 138

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + + R +              D A + +L  LA   G      H A AD  A
Sbjct: 139 -----LDTVLIARRV-----------VTRDEAPNCRLASLATLFGSPTEPNHRALADARA 182

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+A++  + E+   L     +
Sbjct: 183 TVAVLHGLFERLGNLGVTTLE 203


>gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 697

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 28/222 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     ++  +   V+V    E  E    F      +         +T 
Sbjct: 473 DTYVVFDLETTGFSPDKNKIIEIGAVKV-VHGEITERFSTF---VNPEVPIPYRIEELTS 528

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     +    +E      + QF       I+  +N  FD  +      R   +      
Sbjct: 529 IRDDMVIDAPKIE----TILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIE------ 578

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 + ++D +       P   +          FKL  +A A G+   N H A  D  
Sbjct: 579 ----KEFTIIDTVALARILLPQLNR----------FKLDTVAKALGVSLENHHRAVDDAG 624

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
            T  +     +          D  N+        I  M    
Sbjct: 625 CTAEIFVKFVKMLHDRGMETLDQVNQMGQASPETIMKMNTYH 666


>gi|110638081|ref|YP_678290.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280762|gb|ABG58948.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 449

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 77/258 (29%), Gaps = 37/258 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    +  D ET G   + +R  + A  + D + +  ++ +        +         +
Sbjct: 1   MMYSII--DIETTGGHASGNRIIEIAIYKFDGE-KITDTYQTL---INPERRIPVFITSL 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  +      V  A+ +R I  F       +   +N+ FD  + +             
Sbjct: 55  TGIDTEMVADAPV-FADVAREITDFTRDS---VFVAHNVNFDYTFVKKELQALNMPYN-- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      L  +R                 G  S+ L +L  + GI+  N H A  D
Sbjct: 109 --------LPKLCTVRLSRKIF----------PGLPSYSLGNLCGSLGIDVQNRHRAAGD 150

Query: 181 VYATLALVWLIREKKPKLF-EYLYDYRNKNQLRKLI---DIQNMTPLVHVSGMFGASRSN 236
             AT+ L+  +     + F        +K  L       +  +  P       F   +  
Sbjct: 151 AEATVRLLNKLLLNDTEGFIPKSLKKNSKETLLPANLPREQFDALPETFGVYYFHDHKGK 210

Query: 237 TALIAPVAWHPRYKDSVI 254
              +  V      K  VI
Sbjct: 211 ---VIYVGKANNIKKRVI 225


>gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315]
 gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1]
 gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
           MGAS315]
 gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
           SSI-1]
          Length = 1465

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 97/404 (24%), Gaps = 36/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +    L      +          +              
Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L       ++  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             L  G   +      +         L   +   ++  L E  F
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 193

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 28/201 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G     DR  +   +R      + ES + F    +       EAV I GIT
Sbjct: 10  FVAIDVETTGLSNRWDRIVEIGAIRFTP-GSETESFQTF---VSPGRPIPSEAVAIHGIT 65

Query: 65  PQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            +       + EA  +  +  F        + ++N  FD  +                  
Sbjct: 66  DEMVEGAPGLSEASIA--LASFLKDEEP--MVFHNPSFDLGFLDANMRAIKGSW------ 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N    +D   + R  +              G   + L  LA   G+     H A  D   
Sbjct: 116 NVMPVFDTCGLARKAF-------------PGIKGYSLVALARHFGLSGGGHHRALEDCRY 162

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           + +L  LI E           
Sbjct: 163 SASLFNLILEAIDGFRCMSLK 183


>gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232]
 gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232]
          Length = 1465

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 96/404 (23%), Gaps = 36/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHNLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++      +        +    L      +          +              
Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L       ++  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             L  G   +      +         L   +   ++  L E  F
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 269-3]
 gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 269-3]
          Length = 1405

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 141/478 (29%), Gaps = 53/478 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E IE  + F       +      + +T IT
Sbjct: 388 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 443

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   +    EAE  +R  +F        +  +N++FD  +      R+           
Sbjct: 444 DEMVSKAD-DEAEVIKRFQEF---YGDRPLCGHNVQFDVGFVNAALRRSGLKEI------ 493

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  L     +   + H A  D  AT
Sbjct: 494 TQPVVDTLEVSRLLH-------------PEQTKHTLDSLCKKYNVVLEHHHRANQDAEAT 540

Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L++ + +     FE   L    +  +  ++      T +  ++      ++   L++ 
Sbjct: 541 GYLMFKLLDAFNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKNMYKLVSL 600

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
            +    Y++     +     R      S      +F     ++       ++        
Sbjct: 601 ASTQYFYREPRTPISELRKYREGLLFGSGCWKGDVFI--TMMQKGYDEAREKARFYDFLE 658

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVD 357
           + P     +   +    D ++  E L  + +        +       Y  P     +++ 
Sbjct: 659 VQPPAAYSQLIADELIKDEEQLEEILKNIYKLGQELNIPVVATGDCHYLNPEDKIYREIL 718

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
                        Q       T  E L   N    D             N     + K  
Sbjct: 719 IAAQRSNPNRNKSQPKLHFYSTQ-EMLDAFNFMGEDV-----AKEIVIDN-----TNKIA 767

Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
            +  E    K  L    I++   ++  L    + E  G    + + + +   L  +I 
Sbjct: 768 DEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGKPLPKIVKDRIELELNSIIS 825


>gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 1465

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/455 (11%), Positives = 112/455 (24%), Gaps = 50/455 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +    L      +          +              
Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L        +  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPH 410
             L  G   +      +         L  ++   ++  L        +L ++   +N   
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKVHFRTTNEMLDEFTFLGKDLAYQVVVQN--- 812

Query: 411 TLSEKEKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443
             ++         E  K  L    I++ +  +  L
Sbjct: 813 --TQDMADRIEEVEVVKGDLYTPYIDKAEETVAEL 845


>gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429]
 gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096]
 gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429]
 gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096]
          Length = 1465

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 96/404 (23%), Gaps = 36/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++      +        +    L      +          +              
Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L       ++  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             L  G   +      +         L   +   ++  L E  F
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|15604982|ref|NP_219766.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76788983|ref|YP_328069.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
 gi|166154472|ref|YP_001654590.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
 gi|166155347|ref|YP_001653602.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802684|ref|YP_002887878.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804606|ref|YP_002888760.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311062|ref|ZP_05353632.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
 gi|255317363|ref|ZP_05358609.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
 gi|255348621|ref|ZP_05380628.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
 gi|255503161|ref|ZP_05381551.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
 gi|255506839|ref|ZP_05382478.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
 gi|301335732|ref|ZP_07223976.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
 gi|3328673|gb|AAC67854.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
 gi|76167513|gb|AAX50521.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
 gi|165930460|emb|CAP03953.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
 gi|165931335|emb|CAP06907.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231272906|emb|CAX09817.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273918|emb|CAX10710.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525300|emb|CBJ14776.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
 gi|296434850|gb|ADH17028.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
 gi|296435777|gb|ADH17951.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
 gi|296436702|gb|ADH18872.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
 gi|296437637|gb|ADH19798.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
 gi|296438570|gb|ADH20723.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
 gi|297140136|gb|ADH96894.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
 gi|297748391|gb|ADI50937.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-EC]
 gi|297749271|gb|ADI51949.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-LC]
          Length = 232

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 69/234 (29%), Gaps = 30/234 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               + YD ET G  +  DR  + A           ES +        +     EA  I 
Sbjct: 1   MPALIFYDTETTGTQIDKDRIVELAAY----NGTTSESFQTL---VNPEIPIPAEATKIH 53

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +         E  ++  +F    N  ++ +NN  FD         R+        
Sbjct: 54  GITTAEVADAPR-FPEAYQKFIEFCGTDN-ILVAHNNNAFDYPLLVRECRRHGL------ 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 +   +D ++    +  D               LQ L    G E   AH A  DV
Sbjct: 106 ---SEPQLRTIDSLKWAKKYRTDL----------PQHSLQYLRQVYGFEENQAHRALDDV 152

Query: 182 YATLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                +   +       ++++ L +  +    +         PL  V   + A 
Sbjct: 153 ITLYRVFSALVGDLSPDQIYDLLNETCHPRIFKMPFGKYKGKPLSEVPSSYIAW 206


>gi|294498159|ref|YP_003561859.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
           QM B1551]
 gi|294348096|gb|ADE68425.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           megaterium QM B1551]
          Length = 933

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 68/205 (33%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   FV+ D ET G      D+  QFA V V    + +E    F           P    
Sbjct: 1   MNKRFVVVDLETTGHSPKQGDKMIQFAAVIV-EDGKIVERFSSF---LNPGMDIPPFITQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I         + E E S +I +            +N+ FD  + +   Y+   ++  
Sbjct: 57  LTNIQNDMVKDAPLFE-EISPKIIELLDD---AYFVAHNVAFDLTFLQEELYQCGEETLY 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            S          +D +       P              +KL  LA    IEH N H A +
Sbjct: 113 NS---------TVDTVELARILLPTVD----------GYKLSQLAEYLHIEHENPHQADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D   T  ++ L+ EK  KL      
Sbjct: 154 DAEVTARILLLLIEKLKKLPLTTLK 178


>gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 677

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 61/221 (27%), Gaps = 27/221 (12%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F+++D ET G   +  D+  Q   VR+      + S E F        +  PE++   G
Sbjct: 483 TFIVFDTETTGLQPSQGDQIVQIGAVRI-VNGRIL-SGESFNRIVNPGRVIPPESIKFHG 540

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT                +   F +     ++  +N  FD  + R    +          
Sbjct: 541 ITDDMVKDKP-PLGVVLPQFKAFAAD---AVLVAHNAAFDLKFLRMNERQFG-------- 588

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       ++         +     D   T   L  +    GI   + H A  D  
Sbjct: 589 ------------LKFDNPVLDTMMLSNYLDGPETGHSLDAICDRLGISITDRHTALGDAI 636

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
            T A++    +          +   K     +   +     
Sbjct: 637 VTAAVLLNQIDALESRGITTLEQVVKELDMNMALHERQRAF 677


>gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 1153]
 gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 1153]
          Length = 1428

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 141/478 (29%), Gaps = 53/478 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E IE  + F       +      + +T IT
Sbjct: 411 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 466

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   +    EAE  +R  +F        +  +N++FD  +      R+           
Sbjct: 467 DEMVSKAD-DEAEVIKRFQEF---YGDRPLCGHNVQFDVGFVNAALRRSGLKEI------ 516

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  L     +   + H A  D  AT
Sbjct: 517 TQPVVDTLEVSRLLH-------------PEQTKHTLDSLCKKYNVVLEHHHRANQDAEAT 563

Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L++ + +     FE   L    +  +  ++      T +  ++      ++   L++ 
Sbjct: 564 GYLMFKLLDAFNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKNMYKLVSL 623

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
            +    Y++     +     R      S      +F     ++       ++        
Sbjct: 624 ASTQYFYREPRTPISELRKYREGLLFGSGCWKGDVFI--TMMQKGYDEAREKARFYDFLE 681

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVD 357
           + P     +   +    D ++  E L  + +        +       Y  P     +++ 
Sbjct: 682 VQPPAAYSQLIADELIKDEEQLEEILKNIYKLGQELNIPVVATGDCHYLNPEDKIYREIL 741

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
                        Q       T  E L   N    D             N     + K  
Sbjct: 742 IAAQRSNPNRNKSQPKLHFYSTQ-EMLDAFNFMGEDV-----AKEIVIDN-----TNKIA 790

Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
            +  E    K  L    I++   ++  L    + E  G    + + + +   L  +I 
Sbjct: 791 DEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGKPLPKIVKDRIELELNSIIS 848


>gi|149196822|ref|ZP_01873875.1| exonuclease [Lentisphaera araneosa HTCC2155]
 gi|149139932|gb|EDM28332.1| exonuclease [Lentisphaera araneosa HTCC2155]
          Length = 261

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 70/201 (34%), Gaps = 27/201 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V +D ET G +   DR  +   ++V    ++    ++   +   +     EA  ITGIT
Sbjct: 9   IVFFDLETTGLNPTEDRIIEICCIKVHPDGKR----DIKTRRVNPEKPISSEASEITGIT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +    +     + ++ I++FF      I GYN +RFD       F R            
Sbjct: 65  DEDVKDEP-TFKQMAKGIYKFFE--GCDISGYNIMRFDLRVLTEEFKRAGI-------SF 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S  DL+DV R  +                       L      +   AH A+ DV AT
Sbjct: 115 DASAHDLVDVQRIFH-------------KKEPRTLEAALRFYCKKDLEGAHAAENDVIAT 161

Query: 185 LALVWLIREKKPKLFEYLYDY 205
           + ++    +    L   +   
Sbjct: 162 IDVLEGQLDMYDDLENDMAKL 182


>gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus lacrimalis 315-B]
 gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus lacrimalis 315-B]
          Length = 1415

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 66/401 (16%), Positives = 119/401 (29%), Gaps = 41/401 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V++D ET G     D+  +   V++       E             L   +   +T 
Sbjct: 399 NTYVVFDIETTGLSPIRDKITEIGAVKI-VDGIITERFSQL---INPQMLIPEKVQELTR 454

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT      +  +E E + + + F       ++  +N +FD  + R +F  N  D      
Sbjct: 455 ITNALVENEPTIE-EVAPKFYDFIKDS---VLVAHNAKFDTAFIRRVFKENDLDFI---- 506

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L   RA                    F L  L    G+  V AH A  D  
Sbjct: 507 ---NPILDTLSFARA-------------TVKDTKKFNLATLCKKFGVSLVGAHRAVNDAE 550

Query: 183 ATLALVWLIRE--KKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           AT  L   +      PK  ++      K+Q+   I  ++   ++  +      ++   L+
Sbjct: 551 ATAHLFIKLINKIFDPKHIDFNKLNSLKSQIEPEILFESSLSIL--TKNEEGLKNLYKLV 608

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +        + + +  +L    R    + S   +  +F +      +  V  K       
Sbjct: 609 SDSHMKYFNRVAKVPRSLINKYRKGLLIGSGDESGEIFNAFFRNLEIDEVE-KIASFYDY 667

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             + PID                   N  + +   NL     A  N  Y     D+  ++
Sbjct: 668 LEIQPIDNFIPSLLRNKLTREDIIEINKKICKVGENLGIPVIATSNCFYLDEKDDLVRRI 727

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
                                +    L    +D  L E  +
Sbjct: 728 ILNGKVGAPDY--------NAKIKQKLYFRSTDLMLEEFLY 760


>gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo]
 gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo]
          Length = 1465

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 95/404 (23%), Gaps = 36/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++      +        +    L      +          +              
Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L        +  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             L  G   +      +         L   +   ++  L E  F
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 1466

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 60/454 (13%), Positives = 121/454 (26%), Gaps = 48/454 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 427 TYVVFDVETTGLSAINNDLIQIAASKM-YKGNIIEQFDEF---INPGHPLSTFTTELTGI 482

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +          + +  F       I+  +N  FD  +    + R+          
Sbjct: 483 TDNHLIGAKP----ILKVLEAFQDFCQNTILVAHNASFDVGFMNANYERHQLPLI----- 533

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 534 -NQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 579

Query: 184 TLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           T  L+++  ++  +      L D   K           +             ++   L++
Sbjct: 580 TGRLLFIFLKEAREKHGLTNLLDLNTKLVAEDSYKKARVKHATIYVQNQIGLKNIFKLVS 639

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               + +Y + V     +   +  + L               L   V    +  +     
Sbjct: 640 --LSNVKYFEGVPRIPRTVLDQYREGLLLGTGCSEGEVFDAVLTKGVEAAAELANYYDFI 697

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            +MP              D +   +    L+     L     A  N  Y    + +  ++
Sbjct: 698 EIMPPALYNPLIARELIKDQEGVQKIIFDLIEVGKRLNKPVLATGNVHYIEPEEAIYREI 757

Query: 361 YDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPHT 411
                                 P  L   +   ++  L        EL ++   +N    
Sbjct: 758 IVRSLGQGAMINRPIGRGEGAQPAPLPEAHFRTTNEMLDDFAFLGKELAYQVVVQN---- 813

Query: 412 LSEKEKQDWL--EHRKKMLTRSRIEEYKNKLQSL 443
            ++         E  K  L    I++ +  +  L
Sbjct: 814 -TQDFADRIEEVEVVKGDLYTPFIDKAEETVAEL 846


>gi|332653359|ref|ZP_08419104.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Ruminococcaceae bacterium D16]
 gi|332518505|gb|EGJ48108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Ruminococcaceae bacterium D16]
          Length = 1396

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 67/478 (14%), Positives = 143/478 (29%), Gaps = 56/478 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V +D ET G D   +   +     + +  E  E+   F    A   +  PE + +TGIT
Sbjct: 371 IVCFDIETTGLDKRREVIIEIGAAVL-KNGEVTETFNTF---VAPGRILSPEIIHLTGIT 426

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +     + E  R    F        +  +N  FD  +      +            
Sbjct: 427 DEMLVGAP-SQEEALRAFLDFV---GDRPLAAHNAEFDMGFISTGCRKYGIPF------- 475

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L + +             +       +KL  +A    +   N H A  D    
Sbjct: 476 TNPSIDSLILAQ-------------NLLPELGKYKLDIVAEYLQLPAFNHHRASDDAATV 522

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKL---IDIQNMTPLVHVSGMFGASRSNTALIA 241
             ++    EK   +  +  +  N    +        +    L+ ++      R+   LI+
Sbjct: 523 AYMLPPFFEKLEAMGVHRLEDINAAMPKLRKGGKARRQPKHLIVLAKNQTGLRNLYKLIS 582

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
                   +  ++  ++  + R    + S   A  LF +    K    +  +        
Sbjct: 583 LAHLEHFKRYPIMPKSVINENREGLIIGSACEAGELFQAVTADKDWEELK-RIASWYDFL 641

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
            + PI        +      +   + N T++R    L     A  +  +     ++   +
Sbjct: 642 EIQPICNNMFMLRKGMVRSEEELRDFNRTVVRLGEELGKPVCATGDVHFLDPEDEIYRHI 701

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                                ++   +    +D  L E    Y  +   + +  K     
Sbjct: 702 LLASKGFE-----------DADEALPIYFKTTDEMLQEFA--YLGKEKAYEVVVKNTNLI 748

Query: 421 LEHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
            +         + L   ++E+   +L+ L    + E  GDE  + +++ +   L  +I
Sbjct: 749 ADWCDPIKPLPQGLFAPKLEDSDGELKRLVWGKAHELYGDEPPQIVVDRINVELGDII 806


>gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
          Length = 1439

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 141/478 (29%), Gaps = 53/478 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E IE  + F       +      + +T IT
Sbjct: 422 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   +    EAE  +R  +F        +  +N++FD  +      R+           
Sbjct: 478 DEMVSKAD-DEAEVIKRFQEF---YGDRPLCGHNVQFDVGFVNAALRRSGLKEI------ 527

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  L     +   + H A  D  AT
Sbjct: 528 TQPVVDTLEVSRLLH-------------PEQTKHTLDSLCKKYNVVLEHHHRANQDAEAT 574

Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L++ + +     FE   L    +  +  ++      T +  ++      ++   L++ 
Sbjct: 575 GYLMFKLLDAFNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKNMYKLVSL 634

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
            +    Y++     +     R      S      +F     ++       ++        
Sbjct: 635 ASTQYFYREPRTPISELRKYREGLLFGSGCWKGDVFI--TMMQKGYDEAREKARFYDFLE 692

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVD 357
           + P     +   +    D ++  E L  + +        +       Y  P     +++ 
Sbjct: 693 VQPPAAYSQLIADELIKDEEQLEEILKNIYKLGQELNIPVVATGDCHYLNPEDKIYREIL 752

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
                        Q       T  E L   N    D             N     + K  
Sbjct: 753 IAAQRSNPNRNKSQPKLHFYSTQ-EMLDAFNFMGEDV-----AKEIVIDN-----TNKIA 801

Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
            +  E    K  L    I++   ++  L    + E  G    + + + +   L  +I 
Sbjct: 802 DEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYELYGKPLPKIVKDRIELELNSIIS 859


>gi|288556130|ref|YP_003428065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pseudofirmus OF4]
 gi|288547290|gb|ADC51173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pseudofirmus OF4]
          Length = 940

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 82/293 (27%), Gaps = 45/293 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M + F++ D ET G  VA  DR  Q   V +    E IE    F      +    P    
Sbjct: 1   MNDRFIVVDVETTGHSVAKGDRIIQIGAVVI-ENGEIIERFASF---VNPEVEIPPFIEE 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI             E +  +   F          +N+ FD  + +N F         
Sbjct: 57  LTGINQAMVEHAP-TFKELAVELLPLFENVG---FVAHNVPFDLSFLKNQFELIGEKFP- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                    +D +++ R                    S+KL  LA + G+ H   H A +
Sbjct: 112 -----KMKCYDTVELSRM-------------LLPKEESYKLGHLAFSLGLSHDRPHQADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV--HVSGMFGASRSNT 237
           D   T  +                   NK +   L+ ++ + P+V    S +     +  
Sbjct: 154 DAEVTAEI--------------FLYLLNKLKGLPLLTLEQLIPIVRYFRSSLEPMISAFI 199

Query: 238 ALIAPVAWHPRY-KDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289
                +  +     D      L        +               EL     
Sbjct: 200 QEKVMLGVNDAQEFDCYRQLALKKQPEHDNEPAPESFKGTFSEFRSELFSADK 252


>gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO]
 gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO]
          Length = 1379

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 66/478 (13%), Positives = 139/478 (29%), Gaps = 52/478 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +VI D ET G         +   V +    +  +    F          +   V  T
Sbjct: 367 QERYVIVDIETTGLHPMFSEIIEIGAVAI-ENGQITDEFHSF---VKPSEKLNAFTVQFT 422

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            IT Q       +E      + +F        +  +N  FD  + R    ++   ++   
Sbjct: 423 KITDQMLANQPSIE----EVLPKFMEFCKDTTLVAHNANFDYRFLRYWIEKSLKLNWE-- 476

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                +  D L + + +                 +S+ L+ LA    +   + H A  D 
Sbjct: 477 ----PAVIDTLALAKKLVRL--------------SSYNLEKLASHFKLGPFSHHRASEDA 518

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  +   + +   +     +      Q    +          +       ++   LI+
Sbjct: 519 KVTAKIFLELLKLLKERKITTFKEIESLQKESTLRQSKPFHTTIIVQTKEGLKNLYKLIS 578

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDS------VQLAKRLFTSHDELKGLVPVPIKEV 295
               H +Y  SV     S    +   L         +L + + T  +E +    +   + 
Sbjct: 579 N--AHVKYFYSVPRIPKSELQALRAGLLIGSACVGGELIQEMLTGANESEIEEKMAFYDF 636

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                  L+P+        ER    + +  E    +              +  +     +
Sbjct: 637 VEVMPLDLLPVTNDLGLTRERLKELYIKLYEIARKINV------PVVMTGDVHFLDPEDE 690

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
              ++      +   +     LRT  E L      F D              FP+ ++E 
Sbjct: 691 KIRKVLQAPQQENISEQPAAYLRTTDEMLKAALEIFEDTNKAY----KVVVEFPNQIAES 746

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
            ++      +K L   RIE  +++++++    + +  G    E +   L   L  +I 
Sbjct: 747 VEKIV--PLEKKLHTPRIEGAEDQVRTIAMQRAEQLYGTPLPELVERRLNRELDAIIN 802


>gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51]
 gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1447

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 86/280 (30%), Gaps = 33/280 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G   A ++  +   +++ +  + I+      C    +       V +T I
Sbjct: 423 TYCVLDLETTGFSAATEKITEIGIMKI-QGGKIIDQF---GCFVNPEKPIPARVVEVTNI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++ +   +I  F       ++  +N  FD  + ++      YD       
Sbjct: 479 TDDMVRDAETID-QVFPKILNFIE---GSVLVAHNADFDMGFLKHNAKVLGYDFDYT--- 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + +                    ++KL  +A   GI+   AH A  DV  
Sbjct: 532 ----YLDTLSLAK-------------ELFPDYKTYKLGRIAKNLGIKVEVAHRALDDVGT 574

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNTA 238
           T+ +  ++ +   +      +  +     +         L     +  A      ++   
Sbjct: 575 TVKVFNIMVDMLKERGVETLEDIDLKAADEAARKDEYKKLKTYHAIILAKDYTGLKNLYK 634

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF 278
           L++       YK   I  +L         L S      L+
Sbjct: 635 LVSYSHLDYFYKKPRILKSLYKKYSEGLILGSACSEGELY 674


>gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense
           DCB-2]
 gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
           DCB-2]
          Length = 1447

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 86/280 (30%), Gaps = 33/280 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G   A ++  +   +++ +  + I+      C    +       V +T I
Sbjct: 423 TYCVLDLETTGFSAATEKITEIGIMKI-QGGKIIDQF---GCFVNPEKPIPARVVEVTNI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++ +   +I  F       ++  +N  FD  + ++      YD       
Sbjct: 479 TDDMVRDAETID-QVFPKILNFIE---GSVLVAHNADFDMGFLKHNAKVLGYDFDYT--- 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + +                    ++KL  +A   GI+   AH A  DV  
Sbjct: 532 ----YLDTLSLAK-------------ELFPDYKTYKLGRIAKNLGIKVEVAHRALDDVGT 574

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNTA 238
           T+ +  ++ +   +      +  +     +         L     +  A      ++   
Sbjct: 575 TVKVFNIMVDMLKERGVETLEDIDLKAADEAARKDEYKKLKTYHAIILAKDYTGLKNLYK 634

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF 278
           L++       YK   I  +L         L S      L+
Sbjct: 635 LVSYSHLDYFYKKPRILKSLYKKYSEGLILGSACSEGELY 674


>gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii SJ-7A-US]
          Length = 1439

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 106/331 (32%), Gaps = 31/331 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E IE  + F       +      + +T IT
Sbjct: 422 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   +    EAE  +R  +F        +  +N++FD  +      R+           
Sbjct: 478 DEMVSKAD-DEAEVIKRFQEF---YGDRPLCGHNVQFDVGFVNAALRRSGLKEI------ 527

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  L     +   + H A  D  AT
Sbjct: 528 TQPVVDTLEVSRLLH-------------PEQTKHTLDSLCKKYNVVLEHHHRANQDAEAT 574

Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L++ + +     FE   L    +  +  ++      T +  ++      ++   L++ 
Sbjct: 575 GYLMFKLLDAFNDKFEQDDLGKMNDYAKFGQVYKRAKPTHMTVLALTQKGLKNMYKLVSL 634

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
            +    Y++     +     R      S      +F     ++       ++        
Sbjct: 635 ASTQYFYREPRTPISELRKYREGLLFGSGCWKGDVFI--TMMQKGYDEAREKARFYDFLE 692

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ 333
           + P     +   +    D ++  E L  + +
Sbjct: 693 VQPPAAYSQLIADELIKDEEQLEEILKNIYK 723


>gi|295703510|ref|YP_003596585.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
           DSM 319]
 gi|294801169|gb|ADF38235.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           megaterium DSM 319]
          Length = 933

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 68/205 (33%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   FV+ D ET G      D+  QFA V V    + +E    F           P    
Sbjct: 1   MNKRFVVVDLETTGHSPKQGDKMIQFAAVIV-EDGKIVERFSSF---LNPGMDIPPFITQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I         + E E S +I +            +N+ FD  + +   Y+   ++  
Sbjct: 57  LTNIQNDMVKGAPLFE-EISPKIIELLDD---AYFVAHNVAFDLTFLQEELYQCGRETLY 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            S          +D +       P              +KL  LA    IEH N H A +
Sbjct: 113 NS---------TVDTVELARILLPTVD----------GYKLSQLAEYLHIEHENPHQADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D   T  ++ L+ EK  KL      
Sbjct: 154 DAEVTARILLLLIEKLKKLPLTTLK 178


>gi|315640656|ref|ZP_07895761.1| DNA polymerase III [Enterococcus italicus DSM 15952]
 gi|315483595|gb|EFU74086.1| DNA polymerase III [Enterococcus italicus DSM 15952]
          Length = 911

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 71/233 (30%), Gaps = 32/233 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + I D ET G +   DR  QF  V V    E +                 P+   +T
Sbjct: 1   MTTYAIVDIETTGTNPKEDRIFQFGCVFV-ENGEIVGRFAT---MIHPGRSISPQIQHLT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
             T +        E + +  I++  S     +   +NI FD  +      R   +     
Sbjct: 57  HTTNKDVRHSPYFE-DVAPTIYELLS---GTVFVAHNIHFDYRFLNAELERCGCE----- 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G+ H   H A +D 
Sbjct: 108 -RLQLKGIDTVELAQI-------------LFPTEISFRLSDLSESLGLAHERPHQADSDA 153

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
             T  L   + ++               +L +L     M     ++     S+
Sbjct: 154 EVTAQLFIALEQRLA-----SLPLCTIKELSRLSKTLTMQTGEFIAKYVQYSK 201


>gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394]
 gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394]
          Length = 1465

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/404 (11%), Positives = 96/404 (23%), Gaps = 36/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +    L      +          +              
Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + +     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGIPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L        +  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             L  G   +      +         L   +   ++  L E  F
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 584

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V R  E +   +                  +TGI
Sbjct: 32  TFVVVDLETTGTRTTDSGITEIGAVKV-RGGEVLGEFQSL---VNPGREVPAFVARLTGI 87

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      +  F    + C++  +N  FD  + +       Y        
Sbjct: 88  TTAMVSTAPSIDL----VLPSFLEWAHDCVLVAHNAPFDVGFLKAAAAGLGYPWP----- 138

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G    D + + R +              D A + KL  LA          H A AD  A
Sbjct: 139 -GFPVVDTVPLARRVVP-----------KDEAPNHKLATLAHLFRARVTPEHRALADARA 186

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   +     +
Sbjct: 187 TVDVLHGLLDRLGAMGVQHLE 207


>gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750]
 gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750]
          Length = 1465

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/404 (11%), Positives = 97/404 (24%), Gaps = 36/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +    L      +          +              
Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRF------KAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L +     ++                   + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKLVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             L  G   +      +         L   +   ++  L E  F
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1]
 gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum
           reducens MI-1]
          Length = 1426

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 63/477 (13%), Positives = 119/477 (24%), Gaps = 58/477 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           VI D+ET G     D   +   V+     E++                  E   +TGIT 
Sbjct: 415 VIIDFETTGFSPQTDEIIEIGAVKY-LNGEEVGRFGTL---VNPKKEIPFEVTKLTGITD 470

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          E    + +F       ++  +N  FD  + R    +          +  
Sbjct: 471 EMVKDAPDG-KEALTALSEFM---GEAVLVAHNASFDLSFLRVGLRKYL------KQEVT 520

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           N   D L V R                    + KL  L     IE  N H A  D  AT 
Sbjct: 521 NPAIDTLGVARV-------------LFPNLKNHKLNTLVKEFKIELTNHHRAVDDASATA 567

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245
            L  +   K  +         +        +      +  +       ++   LI     
Sbjct: 568 KLWQIFLRKLAEQEISDVKTLSGMGQGVNQEKLKSRHVTILVKDEVGLKNLYQLIT--LS 625

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIK----EVHLNKCP 301
           H RY            ++  + L      +        + G     ++         +  
Sbjct: 626 HLRYFHRQPRIPRRELVKYREGLLIGSACEAGEFYQALMAGASQEELEDIASFYDYLEIQ 685

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            L   ++  +        D K     +  L  +  +        +             + 
Sbjct: 686 PLGNNEFMIRTGQVNGEEDLKEINRKIVALGSKLGIPVVATGDVHFLNPEDEVYRRILMA 745

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN-FPHTL---SEKEK 417
              F                +  + L    ++  L E    Y  R      +        
Sbjct: 746 GKGFD-------------DADNQAPLYFKTTEEMLKEFS--YLGRETAFQVVVSNPRNIA 790

Query: 418 QDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                       L    IE  + ++  +    + E  G+   E +   + + L+ +I
Sbjct: 791 SMIQAFKPIPDTLHPPYIEGAEQQITDMTLQRARELYGEPLPEVVQQRVDKELKSII 847


>gi|146341316|ref|YP_001206364.1| DNA-directed DNA polymerase [Bradyrhizobium sp. ORS278]
 gi|146194122|emb|CAL78141.1| hypothetical protein; putative DNA-directed DNA polymerase
           [Bradyrhizobium sp. ORS278]
          Length = 737

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 64/190 (33%), Gaps = 28/190 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G   + DR  +   V+V R  + +E                 + V +TGIT
Sbjct: 563 YVVVDIETTGSWSSGDRITEIGAVKV-RNHQLVEQWHSL---INPQRPIPAKIVELTGIT 618

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q      V   E +     F       I   +N+ FD  +  + F R            
Sbjct: 619 NQMVRDAPVFH-EIADSFMAFMGDG---IFVAHNVNFDYGFLSSEFERLER--------- 665

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R+  L     +            R  G TS+ L  L    GIE  + H A  D  A 
Sbjct: 666 -RFRFPKLCTCVGMR----------RRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAA 714

Query: 185 LALVWLIREK 194
             L+ LI  K
Sbjct: 715 AHLLNLINTK 724


>gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP]
 gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma
           pulmonis]
          Length = 1435

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 154/476 (32%), Gaps = 51/476 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+YD ET G    L+   QF    + +    IE+   F          D     +TGIT
Sbjct: 404 YVVYDIETTGLSPMLNELIQFGASVI-KNGRIIETHHFF---IKPKSKLDSFTTKLTGIT 459

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +     G    E   +I   F      I+  +N  FD  + +  F  N  +        
Sbjct: 460 QEHL-EKGYELQEALEKISSIFK---ARIMVAHNAAFDHNFLKQKFIDNNIEFEE----- 510

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182
                D L++ + +                  S++L ++A    + +    AH A  D  
Sbjct: 511 -MISIDTLNLAKVLNPIY-------------RSYRLGEVASKLSVVYDPSIAHRADYDSS 556

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG-----ASRSNT 237
               +  L      +    L+   N     K         +  ++            ++ 
Sbjct: 557 VLTNIFILQMSHLKEKGINLFKELNSLSSEKFYSKMFAKDISIIAKNQAGLKELFKINSD 616

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297
            L      +P+     I  + +  +     L+S  + K LF++ +++   +     +   
Sbjct: 617 VLTKYYFANPKMFWEDIKRSKNLLIG-SGGLNSPLIDKLLFSTQEDVLNEIDK--YDYIE 673

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-----TNLRDRFKAIYNKPYTSS 352
              P      +  K   ++  I  ++ ++      +          +            +
Sbjct: 674 IPSPNNFSHFWTTKFSDQQIKIQLQKLIKWAKEKNKIIVAIGEPRYNEKWQKIIHEIYIN 733

Query: 353 SQDVDSQLYDGFFADV--DRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
           S  +++ L+  F      D    ++I +T  E     +  +     PEL      +N P+
Sbjct: 734 STGIENSLHPLFIIKKDMDTFYPEQIYKTTNEMKQEFSFLYD----PELIEEIVVKN-PN 788

Query: 411 TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
            +S + ++  ++  K  L   + ++   KL+ L  E    +  + L   + + ++ 
Sbjct: 789 LISSQIEK--IQVIKDKLYTPKFDDSHIKLKKLVYENAWKKYGKNLPEIIEQRIEK 842


>gi|239995207|ref|ZP_04715731.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC
           27126]
          Length = 711

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 28/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G + + +R  +   V++    ++++  +                  +TGI+
Sbjct: 543 YVVVDIETTGGNSSYNRITEIGMVKL-VGGKEVDRFQTL---LNPQRRIPSNITRLTGIS 598

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +  AE +  +  F       +   +N+ FD  + +  F R            
Sbjct: 599 DDMVADAPL-FAEVAEHVANFTED---AVFVAHNVNFDYGFIKQEFARLEQ--------- 645

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            + R   +  +R +               G  S+ L +L     IE    H A +D  A 
Sbjct: 646 -SFRRPKMCTVREMR----------RTYPGLPSYSLANLTKHFHIEMEQHHRALSDAKAA 694

Query: 185 LALVWLIREKKPKL 198
             L+ L  EK  + 
Sbjct: 695 AELLKLAFEKDDEQ 708


>gi|310828723|ref|YP_003961080.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
 gi|308740457|gb|ADO38117.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
          Length = 461

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 73/205 (35%), Gaps = 25/205 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             ++V+ D ET G D + +   +   +++      I+S + F        +P  +   IT
Sbjct: 143 PKNYVMVDVETTGLDPSNNEIIEIGALKI-TDGNVIDSFKTFVKPIN--SIPS-KITSIT 198

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT                    F S  +  I+GYN + FD  +  + +Y+NF +     
Sbjct: 199 GITNNMVADAP-SIKTVLMEFKSFLS--DNYIVGYNVL-FDIKFLHDSYYKNFGNC---- 250

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +DV+R    +             A + KL  +     I+    H A AD 
Sbjct: 251 ---DWLSHDYIDVLRFCRKYF----------KSAPNHKLTTMIDYLNIDVKEHHRALADC 297

Query: 182 YATLALVWLIREKKPKLFEYLYDYR 206
           YATL      +E+  K         
Sbjct: 298 YATLECYNNCKERALKENIRFELNS 322


>gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005]
 gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005]
          Length = 1465

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 97/404 (24%), Gaps = 36/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +    L      +          +              
Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L       ++  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             L  G   +      +         L   +   ++  L E  F
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 1012

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 67/473 (14%), Positives = 136/473 (28%), Gaps = 49/473 (10%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           ++D ET G     D+  +   V++ +    ++           +       V +TGI+  
Sbjct: 2   VFDIETTGLSSRNDKITEIGAVKI-KNGMIVDRFSQL---INPEKEIPQVVVDLTGISNA 57

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
               +  +E      I +F+      ++  +N +FD  + R  +  N          N  
Sbjct: 58  MVENEPTIE----EVILKFYDFAKDAVLVAHNAKFDISFIRREYANN----------NLV 103

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
               +LD +    A   D             F L  L    G+  V AH A  D  AT  
Sbjct: 104 FNHPILDTLVLARATMSDM----------KRFNLGTLCKNLGVSLVGAHRAVNDAEATAE 153

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246
           +   + EK  +  E+ ++  NK  +         + L+ +       ++   LI+     
Sbjct: 154 VFIKLIEKIKREEEFNFENLNKEIVNIDSKRLFESSLLLLVQNEIGLKNLYMLISDSHMK 213

Query: 247 PRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPI 306
                + +  +L    R    + S      LF +   +     + ++         + P 
Sbjct: 214 YFNFVAKVPRSLLDKYREGILVGSGNSNSELFDAIYRMCPQEEL-LEIAKYYDFLEIQPA 272

Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFA 366
                   +           N  ++     L     A  +  Y   S+DV  ++      
Sbjct: 273 SDNILAIEDGKYTIEDIREINKKIISIGEELNIPVVADSDTYYLEESEDVLRRIVLNGKP 332

Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK 426
                   R                ++  L E    Y  ++  + +            K 
Sbjct: 333 GRPDPRASRNQ--------KFYFKTTEEMLDEFS--YLGQDKAYEVVVTNTNKLKNSIKD 382

Query: 427 M--LTRSRIEEYKNKLQSLSGEYK--------GDEGKEGLINALYEYLQWVIP 469
           +  +                 E          GDE  + + + L + L+ +I 
Sbjct: 383 IKPIPDGTYPPVIEGSDDSLREMTYKKAHDIYGDELPKIVEDRLEKELKSIIS 435


>gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS]
 gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS]
          Length = 1465

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 97/404 (24%), Gaps = 36/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  +   +        +    L      +          +              
Sbjct: 579 TGRLLFIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L       ++  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             L  G   +      +         L   +   ++  L E  F
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|291166154|gb|EFE28200.1| DNA polymerase III, alpha subunit, Gram-positive type [Filifactor
           alocis ATCC 35896]
          Length = 1407

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 99/330 (30%), Gaps = 31/330 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G     D   +   V++ +  E I+    F                +T IT
Sbjct: 390 FVVFDIETTGFSSINDAIIEIGAVKI-KNREIIDRFSEF---VNPKREIPYHITELTSIT 445

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +    +  +E E   R  +F       +   +N  FD  + +    R      R     
Sbjct: 446 NEMVCNEDTIE-EVLPRFMEF---SKDSVFVAHNSDFDTSFIKENCKRLDLLYDRI---- 497

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +D +    A   D              KL  +A   GI   N H A  D  AT
Sbjct: 498 ------AIDTVELSRALLTDL----------KRHKLNVVAKKLGISLENHHRAVDDAEAT 541

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +         +         N+   +  ID      +   +      ++   LI+   
Sbjct: 542 AQIFLKFLTMIEECGVTTLAEVNQKITKTNIDTIRDKSITIFAQNLVGLKNLYKLISFSH 601

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF--TSHDELKGLVPVPI-KEVHLNKCP 301
               Y+   I  +   + R    + +      +F     +  +G+ P  + +++      
Sbjct: 602 IKHFYRIPRILKSELVEHREGLLIGTGGENGEIFGGVREEVERGVDPSVVDEKIKFYDFA 661

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLL 331
            +MP+   +     R+ ++          +
Sbjct: 662 EVMPVSTYRSFFSARFDMNETDLRRINQRI 691


>gi|331091091|ref|ZP_08339933.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405313|gb|EGG84849.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 236

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 68/225 (30%), Gaps = 32/225 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   ++ +D ET G     D   +   V+V+   + ++    F                +
Sbjct: 1   MRKTYISFDLETTGLSEEKDYIIEIGAVKVN-NGKVVDRFARF---LKPPISISNTITNL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT       G  +      I  F    +   +  +NI FD  + +    R        
Sbjct: 57  TGITDDMVKNAGDTQ----ETIKDFIKFCDGYFLLGHNIMFDYKFMKTYAARFGLHF--- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + R ++                 S  L+ L     I + +AH A  D
Sbjct: 110 ----EKEGIDTLKIARKVH-------------KNLESKSLESLCTYYNIVNASAHRAYHD 152

Query: 181 VYATLALVWLIREKKPKLFEYLYD----YRNKNQLRKLIDIQNMT 221
             AT  L  ++          L+          +++K+   Q + 
Sbjct: 153 ALATAKLYHMLAHDFEVSEPSLFTPETLCYKPKKVQKITKKQLIY 197


>gi|294622016|ref|ZP_06701159.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium U0317]
 gi|291598406|gb|EFF29480.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium U0317]
          Length = 929

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  L+ LI E+  KL           Q+ +L     M     +  +    +     + 
Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210

Query: 242 P 242
           P
Sbjct: 211 P 211


>gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 547

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G     DR  + A +R+D     ++       +          A +I GIT
Sbjct: 49  FAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWST---RLNPQRTV--GATWIHGIT 103

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ + ++ Q  +      +G+N  RFD  +      R  +D+   +   
Sbjct: 104 DADVAHAP-SFADVAAQVAQRLT--GAVFVGHNA-RFDAGFVLAELTRAGWDAPEPT--- 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                        I+        W      A+S +L D+A A GI   +AH A  D  AT
Sbjct: 157 -------------IWCTQAASHHW---LPDASSRRLVDVAAAAGISLTHAHSALGDARAT 200

Query: 185 LALVWLI 191
            A++   
Sbjct: 201 AAMLTRY 207


>gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
 gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
          Length = 1465

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 95/404 (23%), Gaps = 36/404 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   +E  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +    F       I+  +N  FD  +    + R+          
Sbjct: 482 TDKHLQGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------K 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++      +        +    L      +          +              
Sbjct: 579 TGRLLFIFLRDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +      + L               L   +   +          +
Sbjct: 639 LSNIKYFEGVPRIPRTVLDAHREGLFLGTACSDGEVFDAVLTKGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVD 357
           MP    +         D     + +  L        +  L                + + 
Sbjct: 699 MPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYREIIV 758

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
             L  G   +      +         L   +   ++  L E  F
Sbjct: 759 RSLGQGAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM
           20162]
 gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM
           20162]
          Length = 610

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 26/189 (13%)

Query: 4   HFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV+ D ET G      D   +   V+V R  E +            +    P    +TG
Sbjct: 21  TFVVVDLETTGGSPKGGDAITEIGAVKV-RGGEVLGEFATL---VDPERGIAPHITHLTG 76

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT              +  +  F       ++  +N RFD  + +               
Sbjct: 77  ITTAMVTGAPT----IASVLPAFLEFAQGAVLVAHNARFDIGFLKAAAAATGTPWP---- 128

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                        +     +    +     D A S KL ++A     E    H A  D  
Sbjct: 129 -------------KPQTLCTVQLARRVLTRDEAPSVKLSEMARLFRAETTPTHRALDDAR 175

Query: 183 ATLALVWLI 191
           AT+ ++  +
Sbjct: 176 ATVDVLHGL 184


>gi|294616364|ref|ZP_06696157.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1636]
 gi|291590878|gb|EFF22594.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1636]
          Length = 929

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 77/241 (31%), Gaps = 32/241 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  L+ LI E+   L           Q+ +L     M     +  +    +     + 
Sbjct: 156 EVTGQLLLLIEERMRNLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210

Query: 242 P 242
           P
Sbjct: 211 P 211


>gi|314997169|ref|ZP_07862155.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a01]
 gi|313588743|gb|EFR67588.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a01]
          Length = 929

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  L+ LI E+  KL           Q+ +L     M     +  +    +     + 
Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210

Query: 242 P 242
           P
Sbjct: 211 P 211


>gi|261209451|ref|ZP_05923814.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566622|ref|ZP_06447041.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           D344SRF]
 gi|260076579|gb|EEW64343.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161563|gb|EFD09444.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           D344SRF]
          Length = 929

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  L+ LI E+  KL           Q+ +L     M     +  +    +     + 
Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210

Query: 242 P 242
           P
Sbjct: 211 P 211


>gi|69247318|ref|ZP_00604300.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
           [Enterococcus faecium DO]
 gi|257890489|ref|ZP_05670142.1| DNA polymerase III [Enterococcus faecium 1,231,410]
 gi|258614363|ref|ZP_05712133.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecium DO]
 gi|260558928|ref|ZP_05831115.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293559766|ref|ZP_06676286.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1162]
 gi|314940162|ref|ZP_07847340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a04]
 gi|314942421|ref|ZP_07849264.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133C]
 gi|314950181|ref|ZP_07853466.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0082]
 gi|314952303|ref|ZP_07855314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133A]
 gi|314994254|ref|ZP_07859557.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133B]
 gi|68194888|gb|EAN09359.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
           [Enterococcus faecium DO]
 gi|257826849|gb|EEV53475.1| DNA polymerase III [Enterococcus faecium 1,231,410]
 gi|260075036|gb|EEW63351.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291606249|gb|EFF35663.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1162]
 gi|313591341|gb|EFR70186.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133B]
 gi|313595562|gb|EFR74407.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133A]
 gi|313598821|gb|EFR77666.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133C]
 gi|313640601|gb|EFS05181.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0133a04]
 gi|313643491|gb|EFS08071.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
           TX0082]
          Length = 929

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  L+ LI E+  KL           Q+ +L     M     +  +    +     + 
Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210

Query: 242 P 242
           P
Sbjct: 211 P 211


>gi|257884118|ref|ZP_05663771.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257819956|gb|EEV47104.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 929

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  L+ LI E+  KL           Q+ +L     M     +  +    +     + 
Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210

Query: 242 P 242
           P
Sbjct: 211 P 211


>gi|294619947|ref|ZP_06699320.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1679]
 gi|291593804|gb|EFF25305.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1679]
          Length = 929

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  L+ LI E+  KL           Q+ +L     M     +  +    +     + 
Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210

Query: 242 P 242
           P
Sbjct: 211 P 211


>gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
 gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
          Length = 1424

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 63/474 (13%), Positives = 139/474 (29%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+  +F+       +  +N++FD  +      R   D        
Sbjct: 463 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L       +       ++       ++  +     + 
Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679

Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           P    ++   ++   D K   E   N+  L ++  +     +  +      +      L 
Sbjct: 680 PPAAYQQLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                      +  +     +++      F D ++         +N     +        
Sbjct: 740 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNIIADKIE 790

Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G+   + + + L   L+ +I 
Sbjct: 791 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844


>gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
 gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
          Length = 1421

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 57/403 (14%), Positives = 116/403 (28%), Gaps = 50/403 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G   A ++  +   V++    + ++           +     +   +T IT
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDN-QIVDEFNQL---INPEIPIPEKITELTSIT 457

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       +E      + +F      C +  +N  FD  + +        +        
Sbjct: 458 NEMVKDMPKIE----EVLPEFLKFVGDCTLIAHNADFDMGFIKKNCLDLRINPI------ 507

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L   RA              +    + KL  L     +   N H A  D  AT
Sbjct: 508 -RTYIDTLAFARA-------------LEPHLKNHKLDTLTKKYNVNLFNHHRACDDARAT 553

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +   + +   K         NK      I  +        +      ++   L+   A
Sbjct: 554 GEVFICMVKDLEKRGVKFDININKIDSDWSISKRESHTATIYAQNLIGLKNLYKLVT--A 611

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDL------DSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
            + +Y     G   S   +  + L      +  +L K +     + + L  +  +   L 
Sbjct: 612 SNLKYFYREGGIPKSELNKRREGLVIGSGNEDGELIKAILGFESD-EKLDEIISRYDFLE 670

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
             P L       K          +   +   L ++    +      Y K +  +     +
Sbjct: 671 VQPPLYYDGVKSKRMSFNLKSCEELTRKLYDLSKKHN--KPLVADSYAKYFEKTDYIFRN 728

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
            + +G    +             E+  TL    +D  + E  F
Sbjct: 729 IILEGQPRKIYG-----------EKFPTLFFRTTDEMMNEFSF 760


>gi|257879980|ref|ZP_05659633.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|257894416|ref|ZP_05674069.1| DNA polymerase III [Enterococcus faecium 1,231,408]
 gi|257814208|gb|EEV42966.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|257830795|gb|EEV57402.1| DNA polymerase III [Enterococcus faecium 1,231,408]
          Length = 929

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  L+ LI E+  KL           Q+ +L     M     +  +    +     + 
Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210

Query: 242 P 242
           P
Sbjct: 211 P 211


>gi|330898430|gb|EGH29849.1| exonuclease I [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 173

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 9/160 (5%)

Query: 315 ERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIM 373
           +R  +D          L ++     D+  A+Y K    +S+D + QLYDGF  D DR++ 
Sbjct: 10  QRLQLDMAGYQARAAQLSERREVWHDKLAAVYGKDDFVASEDPEQQLYDGFIGDRDRRLC 69

Query: 374 DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRS-- 431
           +++ +  PEQL+    PF D RLPEL FRYRARNFP TLS +E+  W +  ++ L     
Sbjct: 70  EQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQIRWRDFCQQRLRSPEW 129

Query: 432 ----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
                + ++      +         +  ++    +Y   +
Sbjct: 130 GAPNTLHDFTAAW--VECSLSAAPEQLEVLRQWQDYANKL 167


>gi|257886903|ref|ZP_05666556.1| DNA polymerase III [Enterococcus faecium 1,141,733]
 gi|257822957|gb|EEV49889.1| DNA polymerase III [Enterococcus faecium 1,141,733]
          Length = 929

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-EAGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ LI E+  KL     +
Sbjct: 156 EVTGQLLLLIEERMRKLPIITLE 178


>gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum
            V10Sc8a]
          Length = 1605

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 134/478 (28%), Gaps = 54/478 (11%)

Query: 3    NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            +  +++D ET G   A +R  +   V++ R  E ++    F                +TG
Sbjct: 589  DDIIVFDIETTGLHPANERITEIGAVKL-RNMEIVDRFSTF---VNPMMPIPSNITELTG 644

Query: 63   ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            IT            + +  +  F +      +  +N +FD  + R+   R          
Sbjct: 645  ITDDMVADAPT--EDVA--VSDFMAFCGNSPVCAHNAKFDVSFIRSAAAR-------MEK 693

Query: 123  DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               N   D L + +A                G  ++KL  +A    +   + H A AD  
Sbjct: 694  SFDNPVVDTLSIAKAA-------------LKGIKNYKLDTIAKYFKLGDFDHHRAVADAE 740

Query: 183  ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241
                +   I     K  +  Y          +   +  T    +        ++   LI+
Sbjct: 741  MLCMIYMHIVNDTRKTAKLEYIGDFNTAFGSVDIKKLPTYHQIILVKNKVGLKNLYRLIS 800

Query: 242  PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
                   YK   I  +L    R    + S   A  LF +  E K       +        
Sbjct: 801  ASNLDYFYKKPRIPKSLLSQYREGLIIGSACEAGELFRAILE-KESQEKIEEIASFYDYL 859

Query: 302  ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             + PI               +   + N  +++    L     A  +  +      V  ++
Sbjct: 860  EIQPIGNNMFLLRNGKVSSEEDLRDLNRAIVQLGDRLGKPVVATCDVHFKDPEDAVFREV 919

Query: 361  YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                    D                 L    +D  L E    Y        +        
Sbjct: 920  LQAGQGYEDFA-----------NQPPLYFRTTDEMLEEFA--YLGEEKAKEVVITNTNRI 966

Query: 421  LEHRK--KMLTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
             +  +  + +        I+    +LQ L    +  + GD+  E +   L + L  +I
Sbjct: 967  ADMIEVVRPIPTGTYTPHIDGADEELQQLCWDRAHAWYGDDLPETVEKRLKKELDSII 1024


>gi|293568616|ref|ZP_06679931.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1071]
 gi|291588576|gb|EFF20409.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1071]
          Length = 929

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-EAGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ LI E+  KL     +
Sbjct: 156 EVTGQLLLLIEERMRKLPIITLE 178


>gi|257883091|ref|ZP_05662744.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257818749|gb|EEV46077.1| DNA polymerase III [Enterococcus faecium 1,231,502]
          Length = 929

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ LI E+  KL     +
Sbjct: 156 EVTGQLLLLIEERMRKLPIITLE 178


>gi|15963758|ref|NP_384111.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021]
 gi|307302561|ref|ZP_07582318.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
 gi|307316108|ref|ZP_07595552.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|15072933|emb|CAC41392.1| Probable DNA polymerase III, epsilon chain [Sinorhizobium meliloti
           1021]
 gi|306897948|gb|EFN28690.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|306903231|gb|EFN33821.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
          Length = 242

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 27/188 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +  G+ ++ Q+     T   +  P  +    PEA+ + GIT 
Sbjct: 4   IIFDTETTGLDNREDRVIEIGGIELENQF-PTGRTIHIYINP-GERKVHPEALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         A+ ++ I  FF          +N  FD  +    F R             
Sbjct: 62  EFLKDKP-PFADVAQEIVDFF---GDARWVAHNATFDIGFINAEFERLGLPPI-----GS 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
           +   D L + R  +   P+               L  L    G++  H   H A  D   
Sbjct: 113 DRVIDTLALARRKHPMGPN--------------SLDALCRRYGVDNSHRTRHGALLDSEL 158

Query: 184 TLALVWLI 191
              +   +
Sbjct: 159 LAEVYIEM 166


>gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec]
 gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec]
          Length = 603

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 57/191 (29%), Gaps = 25/191 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   A     +   VRV R  + +                      +TGI
Sbjct: 28  TFVVVDLETTGGSPATSEITEIGAVRV-RGGQILGEMSSL---VRPSAPIPAFISVLTGI 83

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +  E      +F       ++  +N  FD  + R       Y +  W   
Sbjct: 84  TGAMVATAPGI-GEVVPTFLEF---ARGAVLVAHNAPFDLGFLRAAATACGYPAPAWEH- 138

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   LD +R                D     +L  LA   G      H A AD  A
Sbjct: 139 --------LDTVRIARRV--------ISRDETRDCRLSSLAALFGSATQPNHRALADARA 182

Query: 184 TLALVWLIREK 194
           T+ ++  + E+
Sbjct: 183 TVDVLHGLFER 193


>gi|227551932|ref|ZP_03981981.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecium TX1330]
 gi|257895474|ref|ZP_05675127.1| DNA polymerase III [Enterococcus faecium Com12]
 gi|293378340|ref|ZP_06624509.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecium PC4.1]
 gi|227178933|gb|EEI59905.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecium TX1330]
 gi|257832039|gb|EEV58460.1| DNA polymerase III [Enterococcus faecium Com12]
 gi|292643204|gb|EFF61345.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecium PC4.1]
          Length = 929

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-EAGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ LI E+  KL     +
Sbjct: 156 EVTGQLLLLIEERMRKLPIITLE 178


>gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
           zooepidemicus]
 gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus]
 gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
           zooepidemicus]
          Length = 1465

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/447 (12%), Positives = 111/447 (24%), Gaps = 34/447 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIIEQFDEF---INPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +       +       F       I+  +N  FD  +    + R           
Sbjct: 482 TDNHLVGA-KPIQQVLEAFQAF---CQGTILVAHNASFDVGFMNANYDRYGL------AK 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ISQPVIDTLELARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        +    L      +          +              
Sbjct: 579 TGRLLFIFLKEAREKHGITNLLQLNTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +   +  + L               L   +   +          +
Sbjct: 639 LSNVKYFEGVPRIPRTVLDQYREGLLLGTACSDGEVFDAVLTQGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +         D     + +  L +     +    A  N  Y      +   +  
Sbjct: 699 MPPAIYQPLVVRELIKDQAGVEQIIRDLIEVGRRAQKPVLATGNVHYIEPEDAIYRDIIV 758

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF--RYRARNFPHTLSEKEKQ 418
                               P  L   +   ++  L +  F  +  A       ++    
Sbjct: 759 RSLGQGAMINRTIGRGEAAKPVPLPEAHFRTTNEMLDDFAFLGKDLAYEVVVKNTQALAD 818

Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQSL 443
                E  K  L    I++ +  +  L
Sbjct: 819 RIEEVEVVKGDLYTPYIDKAEETVAEL 845


>gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
 gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
          Length = 1424

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+  +F+       +  +N++FD  +      R   D        
Sbjct: 463 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L       +       ++       ++  +     + 
Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679

Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           P    +    ++   D K   E   N+  L ++  +     +  +      +      L 
Sbjct: 680 PPATYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                      +  +     +++      F D ++         +N     +        
Sbjct: 740 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 790

Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G+   + + + L   L+ +I 
Sbjct: 791 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844


>gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
 gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
          Length = 1416

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 399 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 454

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+  +F+       +  +N++FD  +      R   D        
Sbjct: 455 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 504

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 505 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 551

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 552 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 611

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L       +       ++       ++  +     + 
Sbjct: 612 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 671

Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           P    +    ++   D K   E   N+  L ++  +     +  +      +      L 
Sbjct: 672 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 731

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                      +  +     +++      F D ++         +N     +        
Sbjct: 732 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 782

Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G+   + + + L   L+ +I 
Sbjct: 783 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 836


>gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302434255|gb|EFL06071.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
          Length = 572

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 25/188 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G     D   +   V+V    + +                 P+ V +TGI
Sbjct: 25  TFVVFDLETTGTKPGPDGITEIGAVKVRA-GQVLGEFATL---VNPGTPIPPQIVELTGI 80

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E    R +  F    +  ++  +N  FD  + +     + Y        
Sbjct: 81  TQAMVYDAPRIE----RVLPAFLEFISGAVLVAHNSGFDTSFMKAACEGHGYVWP----- 131

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                       R     +    +     + A S++L  L++  G      H A  D  A
Sbjct: 132 ------------RPTVVCTVKLARRVIPREEARSYRLSSLSMLLGSRTRPTHRALDDARA 179

Query: 184 TLALVWLI 191
           T  ++  +
Sbjct: 180 TTDVLHAL 187


>gi|293553821|ref|ZP_06674436.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1039]
 gi|291602027|gb|EFF32264.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E1039]
          Length = 929

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 32/241 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-ESGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  L+ LI E+  KL           Q+ +L     M     +  +    +     + 
Sbjct: 156 EVTGQLLLLIEERMRKLPIITL-----EQIARLSRHTGMDTSRFIYHVIEEMKEKPEPLD 210

Query: 242 P 242
           P
Sbjct: 211 P 211


>gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis]
 gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114]
          Length = 1437

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/477 (13%), Positives = 131/477 (27%), Gaps = 47/477 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G    LD   +F    V +     +  + F              V  + I 
Sbjct: 407 YVVFDLETTGLSPRLDDIIEFGATIV-KNNTITQKIQFF---LQTKRELSAFTVESSHIN 462

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +     G  + E  ++I++        I   +N  FD  + +  F +   D+       
Sbjct: 463 NEMLKN-GYAQEEGIKKIYEILKDK---IAVAHNANFDINFCKEKFSKLGLDN------- 511

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S+   LD +   Y  +PD        +   S            +   AH    D    
Sbjct: 512 --SKIFGLDTLALSYFLNPD--------EFRHSLGYVAKRFNIIYDTTVAHRGDYDANVL 561

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA-LIAPV 243
             +   + +K  K +  L      N   + I     T    +     A       +I+  
Sbjct: 562 AKIWIKMIDKLAKDYNILNSQDLNNVDSQKILSHKFTYETRILVKNQAGLKKLFKIISRS 621

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
                 K+  I  +  G+        +   +             +   +K     + P +
Sbjct: 622 LTSQFKKNPQIYFDQLGNDEDLFFGSATNQSYVWDQVFTGTNENLLNSLKYYDYIELPPI 681

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
               Y    +                L+ +  +L     A+ +  Y  + Q +  ++Y  
Sbjct: 682 SSFQYMIDSNHVTLDELKFLYK---DLISKAKSLNKMCVAVSDCRYIYNYQRLIHEIYIE 738

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF----RYRAR---NFPHTLSEKE 416
                      +   + PE             L E  F              P+ ++ + 
Sbjct: 739 APTLGGGLHWLKKRPSHPEFRYLTTR----EMLKEFAFLNDSYLINEIVIENPNKIANEI 794

Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQS-----LSGEYKGDEGKEGLINALYEYLQWVI 468
             +     K  L     +    KL+      L   Y  +     ++  + + L  +I
Sbjct: 795 SSNIQ-VIKDKLYVPTFDNSPQKLREVVYRTLKERYGDNPDPI-IVKRIEKELNPII 849


>gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners
           AB-1]
 gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 1420

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 458

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+  +F+       +  +N++FD  +      R   D        
Sbjct: 459 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 508

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 509 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 555

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 556 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 615

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L       +       ++       ++  +     + 
Sbjct: 616 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 675

Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           P    +    ++   D K   E   N+  L ++  +     +  +      +      L 
Sbjct: 676 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 735

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                      +  +     +++      F D ++         +N     +        
Sbjct: 736 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 786

Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G+   + + + L   L+ +I 
Sbjct: 787 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 840


>gi|257898090|ref|ZP_05677743.1| DNA polymerase III [Enterococcus faecium Com15]
 gi|257836002|gb|EEV61076.1| DNA polymerase III [Enterococcus faecium Com15]
          Length = 929

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-EAGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ LI E+  KL     +
Sbjct: 156 EVTGQLLLLIEERMRKLPIITLE 178


>gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
          Length = 1420

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 458

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+  +F+       +  +N++FD  +      R   D        
Sbjct: 459 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 508

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 509 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 555

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 556 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 615

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L       +       ++       ++  +     + 
Sbjct: 616 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 675

Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           P    +    ++   D K   E   N+  L ++  +     +  +      +      L 
Sbjct: 676 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 735

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                      +  +     +++      F D ++         +N     +        
Sbjct: 736 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 786

Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G+   + + + L   L+ +I 
Sbjct: 787 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 840


>gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
 gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
          Length = 1424

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+  +F+       +  +N++FD  +      R   D        
Sbjct: 463 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L       +       ++       ++  +     + 
Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679

Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           P    +    ++   D K   E   N+  L ++  +     +  +      +      L 
Sbjct: 680 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                      +  +     +++      F D ++         +N     +        
Sbjct: 740 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 790

Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G+   + + + L   L+ +I 
Sbjct: 791 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844


>gi|293571662|ref|ZP_06682683.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E980]
 gi|291608332|gb|EFF37633.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus faecium E980]
          Length = 929

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   DR  QF  V +           +             +   +T
Sbjct: 3   PRTYAVVDIETTGTNPKEDRIIQFGCVMI-EAGRITSRFSI---DIHPGRKISKQIQHLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +    E + ++ I+   +     I   +NI FD  +  +   R         
Sbjct: 59  GITNQRVQKAPYFE-DVAQTIYNLLAD---TIFVAHNIYFDYNFLNHELMRCGLP----- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +                    SF+L DL+ + G  H N H A +D 
Sbjct: 110 -SLKIPGIDTVELAQIF-------------LPTEPSFRLADLSESLGFIHENPHQADSDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ LI E+  KL     +
Sbjct: 156 EVTGQLLLLIEERMRKLPIITLE 178


>gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 1449

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/401 (12%), Positives = 112/401 (27%), Gaps = 44/401 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G     ++  +   +++ +  + I++   F      +       V +T I
Sbjct: 425 TYCVLDLETTGFSPVTEKITEIGIMKI-KDGKVIDTFSTF---VNPEKPIPLRVVEVTNI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E +   ++  F       ++  +N  FD  + ++       D       
Sbjct: 481 TDDMVRNAETIE-QVFPKMLDFIKDS---VLVAHNAEFDVGFLKHNAKILGCDF------ 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + + ++                 ++KL  +A   GI+   AH A  DV  
Sbjct: 531 -DFTYVDTLSLAQEVF-------------PDFKTYKLGRIAKNLGIKVEVAHRALDDVAT 576

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNTA 238
           T+ +  ++ EK  +         +     +    +    L     +  A      ++   
Sbjct: 577 TVKVFNVMLEKLKERGAENLKDIDIYGRDEAAKKEEYKKLKTYHAIILAKDYVGLKNLYK 636

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
           L++       YK   I  +L         L S      L+ +   L        +     
Sbjct: 637 LVSYSHLDYFYKKPRILKSLYKKYSEGLILGSACSEGELYQA-ILLGKSDEEIEELAKGY 695

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
               + P+               +   E    +       ++        +    +D   
Sbjct: 696 DYLEIQPLGNNDYLVRTEQVPGKEYLEEINKKIVALGEKLNKLVVATGDVHFMDPEDEIY 755

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           +                      +  + L L  ++  L E 
Sbjct: 756 RRILEAGQGFK----------DADNQAPLYLKTTEEMLEEF 786


>gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
 gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
          Length = 584

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V R  E++    V            P    +TGI
Sbjct: 31  TFVVVDLETTGGAPDGGGITEIGAVKV-RGGEELG---VLATLVNPGVPIPPFITVLTGI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    L    +E    + +  F    +  ++  +N  +D  + +    R+ Y        
Sbjct: 87  TEAMLLPAPSIE----QVLPSFLEFVSDAVLVAHNAPYDVGFLKAACARHGYRWP----- 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + R +              D   + KL  LA          H A  D  A
Sbjct: 138 -NPRVLDTAALARRV-----------LLRDEVPNRKLGTLAAYFRAATTPTHRALDDARA 185

Query: 184 TLALVWLI 191
           T+ ++  +
Sbjct: 186 TVDVLHGL 193


>gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
 gi|311889521|emb|CBH48838.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
          Length = 577

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 25/200 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     D   +   V+V R  E +                 P  V +TGI
Sbjct: 28  TFVVVDLETTGGSSESDAITEIGAVKV-RGGEVLGELGTL---VDPGRAIPPYIVELTGI 83

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      +  F       ++  +N  FD  + +    R           
Sbjct: 84  TTAMVRTAPRID----TVLPAFLEFAGGAVLVAHNAGFDVGFLKAAAARQGLPW------ 133

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               ++ +L  ++                D A S KL  LA   G +    H A  D  A
Sbjct: 134 ---PKFQVLCTVKLARRVLG--------RDEAPSVKLSALAALLGADTTPTHRALDDARA 182

Query: 184 TLALVWLIREKKPKLFEYLY 203
           T+ ++  +  +      +  
Sbjct: 183 TVDVLHALIGRVGNQGVHSL 202


>gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707]
 gi|325552236|gb|EGD21926.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707]
          Length = 577

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 25/200 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     D   +   V+V R  E +                 P  V +TGI
Sbjct: 28  TFVVVDLETTGGSSESDAITEIGAVKV-RGGEVLGELGTL---VDPGRAIPPYIVELTGI 83

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      +  F       ++  +N  FD  + +    R           
Sbjct: 84  TTAMVRTAPRID----TVLPAFLEFAGGAVLVAHNAGFDVGFLKAAAARQGLPW------ 133

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               ++ +L  ++                D A S KL  LA   G +    H A  D  A
Sbjct: 134 ---PKFQVLCTVKLARRVLG--------RDEAPSVKLSALAALLGADTTPTHRALDDARA 182

Query: 184 TLALVWLIREKKPKLFEYLY 203
           T+ ++  +  +      +  
Sbjct: 183 TVDVLHALIGRVGNQGVHSL 202


>gi|56963828|ref|YP_175559.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus clausii KSM-K16]
 gi|56910071|dbj|BAD64598.1| ATP-dependent DNA helicase DinG [Bacillus clausii KSM-K16]
          Length = 942

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 60/205 (29%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+  FV+ D ET G       +  Q   V+V       +    F           P    
Sbjct: 1   MSQSFVVIDLETTGNSPDQGAKMIQIGAVKV-EGCTITDRFSTF---VDPGCSIPPFITE 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT +      V   E +  +  F    +   +  +N+ FD  +              
Sbjct: 57  LTGITDKDVEGAPV-FREIATDLLAFMEGSS---LVAHNVPFDKGFLEAQLETEGLRL-- 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                   +    D +                     S+KL +L+ +  ++H   H A +
Sbjct: 111 -------PKCCQFDTVELSRVLL----------PTQESYKLSELSSSLDMDHDRPHRADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D   T  L   +  K  +L      
Sbjct: 154 DAEITAELFIKLLHKLERLPLVTLQ 178


>gi|229824922|ref|ZP_04450991.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
           49176]
 gi|229790925|gb|EEP27039.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
           49176]
          Length = 1463

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/479 (14%), Positives = 129/479 (26%), Gaps = 55/479 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G      R  +   V+V    + I+    F            E   +T IT 
Sbjct: 436 VVFDIETTGFGPKNCRIIEIGAVKV-MGGKVIDKFSAF---VNPKQSIPEEITKLTSITQ 491

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
              + +     E    +  F      C +  +N  FD  +      R             
Sbjct: 492 DMVINEP----EIDVILPAFLEFCKGCFLVAHNASFDTSFIFENMKRLGL---------- 537

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           N  + + D +                  G  ++KL  +A   GI   + H A  D   T 
Sbjct: 538 NEDFTIADTVTISRVLL----------PGLKNYKLDTVAERLGITLEHHHRAVDDAGCTA 587

Query: 186 ALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM-TPLVHVSGMFGASRSNTALIAPV 243
            +   L      K    L    N N+      I+ M T  + +       R N   +  +
Sbjct: 588 EIYIKLCELAVTKYGNELLGNFNTNEGFCCDTIKKMGTDHIIILAKNDIGRINLYKLVSL 647

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             H  Y         S  M   + L        +  S  E   L    ++    ++   +
Sbjct: 648 -SHLEYFQRRPRIPKSLLMANREGL--------IIGSACEAGELYQAVLRRHGEDELAAI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
                  +                  +  ++       K +      +         +  
Sbjct: 699 ADFYDYFEIQPLDNNGFMIESDRVPDITSEEDLREINRKIVELGEKFNKPVVATCDAHFL 758

Query: 364 FFADVDRQIMDRILR--TAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT-------LSE 414
              D   +      +     ++   L L  ++  L E    Y  +            L  
Sbjct: 759 NPEDEIYRKYLLWSKGMKDADRPLPLYLRTTEEMLEEFA--YLGKEKAEEVVITNTNLIA 816

Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
              ++    R        IE    +L+ +    + E  GD+  + +++ L   L  +I 
Sbjct: 817 DMIENISPVRPDK-CAPIIENSDAELRRICYDKAHEIYGDDLPKKVVDRLEHELNSIIS 874


>gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233]
 gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM
           44233]
          Length = 613

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 63/201 (31%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G   A +   +   V+V R  + +                 P+   +TGI
Sbjct: 48  TFVVVDLETTGGSPATEAITEIGAVKV-RGGQVLGEFATL---VDPGRTIPPQITMLTGI 103

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  F       ++  +N RFD  + R    R           
Sbjct: 104 TNAMVYDAPR----ISSVLPAFLEFARGSVLVAHNARFDVGFLRAACARQQVPWP----- 154

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G +  D + + R +                A S +L  LA   G      H A  D  A
Sbjct: 155 -GPAVVDTVRLARKV-----------LPRAEAPSVRLSALAALLGARTRPDHRALTDARA 202

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   L  +   
Sbjct: 203 TVDVLHALFERLGSLGVHSLA 223


>gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
 gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
          Length = 236

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 66/225 (29%), Gaps = 33/225 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +  G+ +   +     T   +  P  D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLDNKADRIIEIGGIELFNHF-PTGKTLHLYINP-GDRKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         A+ +  I  FF          +N  FD  +    F R             
Sbjct: 62  ESLKDKP-PFADVADEILAFFEGAK---WIAHNATFDMGFVNAEFNRLGRPPIL-----P 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
           +   D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 113 DMVIDTLAMARRKHPMGPN--------------SLDALCRRYGIDNSHRTRHGALLDSEL 158

Query: 184 TLALV------WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
              +                        R  N + +++      P
Sbjct: 159 LAEVYIEMIGGRQTALGLGSSNGSSARSRQNNDVEEVVVEILARP 203


>gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1421

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/400 (12%), Positives = 108/400 (27%), Gaps = 44/400 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G   A ++  +   V++    + ++           +     +   +T IT
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDN-KIVDEFNQL---INPEIPIPEKITELTSIT 457

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       ++A     + +F      C +  +N  FD  + +        +        
Sbjct: 458 NEMVKDMPKIDA----VLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPV------ 507

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L   RA              +    + KL  L     +   N H A  D  AT
Sbjct: 508 -RTYIDTLAFARA-------------LEPHLKNHKLDTLTKKYNVNLFNHHRACDDARAT 553

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
             +   +     +         N+      +   ++ T  ++   + G       + A  
Sbjct: 554 GEVFICMVNNLEQRGFKFDININQMDSDWSISKRESHTATIYAKNLIGLKNLYKLVTASN 613

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH--LNKCP 301
             +   +  +    L+            +  + +              I   +  L   P
Sbjct: 614 LKYFSREGGIPKSELNKRREGLVIGSGNENGELIKAILSFESDEKIDEIISRYDFLEVQP 673

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            L       K          +   +   L  +   L       Y K +        + + 
Sbjct: 674 PLYYDGVKSKSMSFNLRSCEELTRKLYDLSLKHNKLL--VADSYAKYFEKEDYIFRNIIL 731

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
           +G    +             E+  TL    +D  + E  F
Sbjct: 732 EGQPRKIYG-----------EKFPTLFFRTTDEMMNEFGF 760


>gi|238062933|ref|ZP_04607642.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
 gi|237884744|gb|EEP73572.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
          Length = 286

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 62/184 (33%), Gaps = 30/184 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G     DR  + A VR+      ++              PDP   F+  IT
Sbjct: 37  FVVVDVETTGLSSTSDRIVEIALVRI-EGGRVVDEWATL---VDPGRDPDP--TFVHHIT 90

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+ +  I    S  +  ++  +N RF++ +    F R            
Sbjct: 91  AEMLSGAP-TFADVAGEI---LSRLDGAVVVAHNARFEEGFIAQEFARVGI--------- 137

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +    +  +R                  A +F+L       GIE  +AH A  D  AT
Sbjct: 138 STAPLPAVCTLRLARQVL-----------AAPNFQLVSCCTVYGIELHDAHTALGDTRAT 186

Query: 185 LALV 188
             L+
Sbjct: 187 AQLL 190


>gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
 gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
          Length = 1420

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 458

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+  +F+       +  +N++FD  +      R   D        
Sbjct: 459 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 508

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 509 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 555

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 556 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 615

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L       +       ++       ++  +     + 
Sbjct: 616 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 675

Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           P    +    ++   D K   E   N+  L ++  +     +  +      +      L 
Sbjct: 676 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 735

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                      +  +     +++      F D ++         +N     +        
Sbjct: 736 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNIIADKIE 786

Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G+   + + + L   L+ +I 
Sbjct: 787 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 840


>gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 1407

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/481 (13%), Positives = 140/481 (29%), Gaps = 53/481 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + F ++D ET G     D   +   V++ ++ + I++ E F                +
Sbjct: 390 LEDEFTVFDIETTGLSNINDEIIEIGAVKI-KEGKIIDTFETF---VNPKIPISSFITKL 445

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI          +E E      +F    N+ ++ +N      +        N   +   
Sbjct: 446 TGIDESIVKDAPSIE-EILPNFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNVNNA- 501

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     +LD +        D            ++KL  L+    ++  + H A  D
Sbjct: 502 ----------VLDTLELSRHLYKDL----------KNYKLDTLSEHLQVKLEHHHRAVDD 541

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +     ++  +L        N       +DI+ + P+ HV+ +    +    L 
Sbjct: 542 ARATAEIFIKTIDRLKELGVKKVKDINAILRESEVDIRKL-PVYHVTILVKDQKGLRNLY 600

Query: 241 APVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LN 298
             ++  +  Y         S  + + + L      ++       +  L    ++ +    
Sbjct: 601 EIISKSNLEYFHRTPRIPKSLLISMREGLIIGSACEQGEVFRAIVSNLEEKKLENIISFY 660

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
               + P+   +    +      +   E    +       ++        +     D   
Sbjct: 661 DYLEVQPVGNNEFLIEKGEVKSVEELREINRKIYLLGKKYNKLVVATGDVHFLDPWDNIY 720

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
           +                      ++   L    +D  L E  F Y        +      
Sbjct: 721 RKILMAGKGYK----------DADRQPPLYFKTTDEMLKE--FEYLGEEVAKEIVIDNPN 768

Query: 419 DWLEHRKKM--LTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +  +++  +        IE  + +L+ L    + E  GD   E + N L   L  +I
Sbjct: 769 KIADLVEEVKPIPDGTFPPVIEGAEEELRKLTLDKAHEIYGDPLPEIVQNRLDRELNSII 828

Query: 469 P 469
            
Sbjct: 829 N 829


>gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1463

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 69/249 (27%), Gaps = 32/249 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G     D   +   VRV    E  E+          + +   + V ITGI
Sbjct: 447 SFVVFDIETTGLLKYRDAITEIGAVRV-ENGEITETYNQL---INPERILPEKIVEITGI 502

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++      +  F       +I   N  FD  + R    R           
Sbjct: 503 TDAMLADKPKID----EVLPGFLDFCGDSLIVGQNTDFDVGFIRENAKRLGL-------K 551

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + RA               D    F L  +A    I   N H A  D  A
Sbjct: 552 FDPIYLDTLPMARA-------------LFDDMGKFSLDKIARKLDIPAFNHHRASDDARA 598

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  +   + +   +         N+ +     +          +  F   ++    +  +
Sbjct: 599 TAQIFIKMYKMIMEEEGLNLSKINRLK----TNYPKAKHETFSALAFAKDKTGLKNLYKL 654

Query: 244 AWHPRYKDS 252
               R    
Sbjct: 655 ISESRMNYM 663


>gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
          Length = 1424

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/474 (13%), Positives = 137/474 (28%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+   F+       +  +N++FD  +      R   D        
Sbjct: 463 DEMVQNAD-DENIVIRQFQDFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L       +       ++       ++  +     + 
Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679

Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           P    +    ++   D K   E   N+  L ++  +     +  +      +      L 
Sbjct: 680 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                      +  +     +++      F D ++         +N     +        
Sbjct: 740 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 790

Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G+   + + + L   L+ +I 
Sbjct: 791 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844


>gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
 gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
          Length = 1424

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/474 (13%), Positives = 137/474 (28%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+  +F+       +  +N++FD  +      R   D        
Sbjct: 463 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L               ++       ++  +     + 
Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLHGDVFISMMQKGYDATREKARIYDFLEVQ 679

Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           P    +    ++   D K   E   N+  L ++  +     +  +      +      L 
Sbjct: 680 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                      +  +     +++      F D ++         +N     +        
Sbjct: 740 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNIIADKIE 790

Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G+   + + + L   L+ +I 
Sbjct: 791 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844


>gi|268610447|ref|ZP_06144174.1| DNA polymerase III, alpha subunit [Ruminococcus flavefaciens FD-1]
          Length = 1441

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/475 (12%), Positives = 145/475 (30%), Gaps = 53/475 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G +   DR  +   V++ +  + ++S      K   +     +   +TGI+ 
Sbjct: 426 IVFDVETTGLNFRTDRLTEIGAVKL-KNLQVVDSFNT---KVNPEKPIPEKITELTGISD 481

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                    EAE  R   +F    +  ++  +N R+D      +  R           N 
Sbjct: 482 ADVKDAPH-EAEALRMFMEF--CGDKPVLIAHNARYDTNMINQVCKR----------QNI 528

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +  +  +D +    +  P+  +           KL  +A    +   + H A  D     
Sbjct: 529 DFDYTWVDTLVMCQSMLPEMGR----------HKLNLVAKQLKLGKFDHHRASDDALMLA 578

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIAPVA 244
            +   +  +      +         + ++   +  +    +     A  ++   L++   
Sbjct: 579 KIYIELAGRLKNDRGFKSLNELNRLVDEIETKKLKSYHHIILVRNQAGLKNLYKLVSLSN 638

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
               YK  +I  ++    R      S   A  LF +  +++       +         + 
Sbjct: 639 LEYFYKKPLIPKSILEQHREGLIFGSACEAGELFQAILDIRDEE-YIEQIAKFYDYLEIQ 697

Query: 305 PIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           PI   +    +    + +  ++ N  ++     L     A  +  +      +  ++   
Sbjct: 698 PIGNNEFMVRDGKAENDEELMQYNREIVELGDKLGIPVCATCDVHFIDPKDGIYRKIILA 757

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL------SEKEK 417
                             E  + L L  ++  + E    Y        +      +  ++
Sbjct: 758 SMGFK-----------DAENQAPLYLRTTEEMMKEFA--YLGEEKAKEIVITNTNNIADQ 804

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEY----KGDEGKEGLINALYEYLQWVI 468
            + +    K      I+  + +L  ++ E      GD   E +   L   L  +I
Sbjct: 805 IEVVRPIPKGTFTPTIDGAEEELVKITHEKAFSIYGDPLPEIVDKRLDRELSSII 859


>gi|150398405|ref|YP_001328872.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
 gi|150029920|gb|ABR62037.1| DNA polymerase III, epsilon subunit [Sinorhizobium medicae WSM419]
          Length = 242

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 62/188 (32%), Gaps = 27/188 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +  G+ ++ Q+     T   +  P  D    PEA+ + GIT 
Sbjct: 4   IIFDTETTGLDNREDRVIEIGGIELENQF-PTGRTIHIYINP-GDRKVHPEALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                     AE ++ I  FF          +N  FD  +    F R             
Sbjct: 62  DFLKDKP-SFAEIAQEIVDFF---GDARWVAHNATFDMGFINAEFERLGLPPV-----GS 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
           +   D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 113 DRVIDTLSLARRKHPMGPN--------------SLDALCRRYGIDNSHRTRHGALLDSEL 158

Query: 184 TLALVWLI 191
              +   +
Sbjct: 159 LAEVYIEM 166


>gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
 gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
          Length = 1465

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/447 (12%), Positives = 109/447 (24%), Gaps = 34/447 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIIEQFDEF---INPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +       +       F       I+  +N  FD  +    + R           
Sbjct: 482 TDNHLVGA-KPIQQVLEAFQAF---CQGTILVAHNASFDVGFMNANYDRYGL------AK 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ISQPVIDTLELARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        +    L      +          +              
Sbjct: 579 TGRLLFIFLKEAREKHGITNLLQLNTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +   +  + L               L   +   +          +
Sbjct: 639 LSNVKYFEGVPRIPRTVLDQHREGLLLGTACSDGEVFDAVLTQGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +         D     + +  L +          A  N  Y      +   +  
Sbjct: 699 MPPAIYQPLVVRELIKDQAGVEQIIRDLIEVGRRAEKPVLATGNVHYIEPEDAIYRDIIV 758

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQ 418
                               P  L   +   ++  L +  F     A       ++    
Sbjct: 759 RSLGQGALINRTIGRGEAAKPVPLPEAHFRTTNEMLDDFAFLGQDLAYEVVVQNTQALAD 818

Query: 419 DWL--EHRKKMLTRSRIEEYKNKLQSL 443
                E  K  L    I++ +  +  L
Sbjct: 819 RIEKVEVVKDDLYTPYIDKAEETVAEL 845


>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC
           33386]
          Length = 1421

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 28/225 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++I+D ET G D   D+  +   V++ +    I+    F      +     E + +T IT
Sbjct: 399 YIIFDIETTGFDPYKDKIIEIGAVKL-KGRNIIDRFSAF---VNPEVPIPEEIIKLTNIT 454

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +++      + +F      C +  +N +FD  +      +   +        
Sbjct: 455 DDMVKDAELID----TVLPRFLEFCGDCTMVAHNAKFDVGFLTQKARQLELEFLP----- 505

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D +        D             F L+ LA    I   N H A  D  AT
Sbjct: 506 -----SVIDTLYWARVLITDL----------KRFNLKALANYFNISLDNHHRAVDDAEAT 550

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
            ++   +               N      +     M  ++ V   
Sbjct: 551 ASIFIKMLNMVLSKGILQIYEINDTFQNNVQTADTMNTMILVKNR 595


>gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
 gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
          Length = 1358

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 68/220 (30%), Gaps = 30/220 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G     DR  +    +V    +  E           + L   +   ITGI
Sbjct: 341 SFVVFDLETTGLSRYRDRITEIGACKV-IDGKICEIYNEL---VNPEMLIPEKITEITGI 396

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T Q       +E      +  F       I+   N  FD  + R    R   D       
Sbjct: 397 TNQMVESCPKIE----EVLPGFLEFCQGSILVGQNTDFDVGFVRENCTRLGLDFN----- 447

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + RA++A                 F L  +A    I   N H A  D  A
Sbjct: 448 --PLYLDTLPMARALFA-------------DMKKFSLDKIARKLEIPAFNHHRASDDARA 492

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
           T  +   I+  K  + E   D  + N+L+           
Sbjct: 493 TAQIF--IKMFKMIMKEDGIDLSSINKLKSYWPKAKHEYF 530


>gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
 gi|167657062|gb|EDS01192.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
          Length = 1605

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 134/478 (28%), Gaps = 54/478 (11%)

Query: 3    NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            +  +++D ET G   A +R  +   V++ R  E +E    F                +TG
Sbjct: 589  DDIIVFDIETTGLHPANERITEIGAVKL-RNMEIVERFSTF---VNPMMPIPSNITELTG 644

Query: 63   ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            IT            + +  +  F +      +  +N +FD  + R+   R          
Sbjct: 645  ITDDMVADAPT--EDVA--VSDFMAFCGNSPVCAHNAKFDVSFIRSAAAR-------MEK 693

Query: 123  DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               N   D L + +A                G  ++KL  +A    +   + H A AD  
Sbjct: 694  SFDNPVVDTLSIAKAA-------------LKGIKNYKLDTIAKYFKLGDFDHHRAVADAE 740

Query: 183  ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241
                +   I     K  +  Y          +   +  T    +        ++   LI+
Sbjct: 741  MLCMIYMHIVNDTRKTAKLEYIGDFNTAFGSVDIKKLPTYHQIILVKNKVGLKNLYRLIS 800

Query: 242  PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
                   YK   I  +L    R    + S   A  LF +  E K       +        
Sbjct: 801  ASNLDYFYKKPRIPKSLLSQYREGLIIGSACEAGELFRAILE-KESQEKIEEIASFYDYL 859

Query: 302  ILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             + PI               +   + N  +++    L     A  +  +      V  ++
Sbjct: 860  EIQPIGNNMFLLRNGKVSSEEDLRDLNRAIVQLGDRLGKPVVATCDVHFKDPEDAVFREV 919

Query: 361  YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
                    D                 L    +D  L E    Y        +        
Sbjct: 920  LQAGQGYEDFA-----------NQPPLYFRTTDEMLEEFA--YLGEEKAKEVVITNTNRI 966

Query: 421  LEHRK--KMLTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
             +  +  + +        I+    +LQ L    +  + GD+  E +   L + L  +I
Sbjct: 967  ADMIEVVRPIPTGTYTPHIDGADEELQQLCWDRAHAWYGDDLPETVEKRLKKELDSII 1024


>gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 27-2-CHN]
 gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
 gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 27-2-CHN]
 gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
          Length = 1439

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 31/331 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E IE  + F       +      + +T IT
Sbjct: 422 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   +    EAE  +R  +F        +  +N++FD  +      R+           
Sbjct: 478 DEMVSKAD-DEAEVIKRFQEF---YGDRPLCGHNVQFDVGFVNAALRRSGLKEI------ 527

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  L     +   + H A  D  AT
Sbjct: 528 TQPVVDTLEVSRLLH-------------PEQTKHTLDSLCKKYNVVLEHHHRANQDAEAT 574

Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L++ + +     FE   L    +  +  ++        +  ++      ++   L++ 
Sbjct: 575 GYLMFKLLDAFNDKFEQDDLGKMNDYAKFGQVYKRAKPAHMTVLALTQKGLKNMYKLVSL 634

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
            +    Y++     +     R      S      +F     ++       ++        
Sbjct: 635 ASTQYFYREPRTPISELRKYREGLLFGSGCWKGDVFI--TMMQKGYDEAREKAKFYDFLE 692

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ 333
           + P     +   +    D  +  E L  + +
Sbjct: 693 VQPPAAYSQLIADELIKDENQLEEILKNIYK 723


>gi|315504521|ref|YP_004083408.1| DNA polymerase iii, epsilon subunit [Micromonospora sp. L5]
 gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5]
          Length = 584

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V R  E++    V            P    +TGI
Sbjct: 31  TFVVVDLETTGGAPDGGGITEIGAVKV-RGGEELG---VLATLVNPGVPIPPFITVLTGI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    L    +E +      +F S     ++  +N  +D  + +    ++ Y        
Sbjct: 87  TQAMLLPAPPIE-QVLPSFLEFISD---AVLVAHNAPYDVGFLKAACAKHGYRWP----- 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + R +              D   + KL  LA          H A  D  A
Sbjct: 138 -NPRVLDTAALARRV-----------LTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKA 185

Query: 184 TLALVWLI 191
           T+ ++  +
Sbjct: 186 TVDVLHGL 193


>gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 1402

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/480 (14%), Positives = 136/480 (28%), Gaps = 58/480 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E I+  + F       +      + +T IT
Sbjct: 383 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 438

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          + +  I +F        +  +N++FD  +      R  Y         
Sbjct: 439 DEMVQAAD----DEAVVIKEFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEI------ 488

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  L     +   + H A  D  AT
Sbjct: 489 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVALEHHHRANQDAEAT 535

Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              +  L+     K  E      N     +       T +  ++        N   +  +
Sbjct: 536 GYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 595

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A   +Y    +    S   R+   L       +       ++       K+        +
Sbjct: 596 AGI-KYNFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYKEAKKKAEFYDFLEI 654

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDS 358
            P         +    D  +  E LT + +        +     A Y   + +  +DV  
Sbjct: 655 QPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLL 714

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTL 412
               G      +        T                L E  F     A+      P+ +
Sbjct: 715 AAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISNPNKI 761

Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +     + ++  +      +I     ++++L    + E  GD   + +   L   L  +I
Sbjct: 762 NA-MIDEGVQPVQDESFPPKIPHTAERVRNLTYDKAHELYGDPLPDNIQARLDRELDAII 820


>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
 gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
          Length = 1438

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 65/222 (29%), Gaps = 28/222 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G D   D+  +   +++  + E I+   VF      +     E   +T IT
Sbjct: 412 YVVFDIETTGLDPYKDKIIEIGAIKLKGK-EIIDEFSVF---INPEIDIPEEITALTNIT 467

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    VE      + +F        +  +N +FD  +          +        
Sbjct: 468 NDMVKDAEKVE----TVLPKFLEFCKDTTVVAHNAKFDVGFINQKAKNLGLE-------Y 516

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S  D L   R                     F L+ +A    +   N H A  D  AT
Sbjct: 517 SPSVIDTLHWARI-------------LLPEQKRFGLKYIANYFNVVLDNHHRAVDDAKAT 563

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
             +                   N+     + +   +  ++ V
Sbjct: 564 AEIFQKFLNMVLSRGVLKLSEINQELQTNIQNADTLNTMILV 605


>gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus halodurans C-125]
 gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 942

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M N FV+ D ET G+ VA  DR  +   V ++ +    E+ E F      +    P    
Sbjct: 1   MNNRFVVIDIETTGQSVAQGDRIIEIGAVVIEDE----EAVESFCTLVNPERSIPPFIEE 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+ +             + I +  S+    +   +N+ FD  + + +     Y    
Sbjct: 57  LTGISDEMVKGAPTFH----QCIPELMSMLEGGVFVAHNVHFDLSFLQKLLEHEGY---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                G     ++D +                     S+KL  L    G+EH N H A +
Sbjct: 109 -----GPLLVPIIDTVELSRILL----------PTEESYKLSALTEQLGLEHENPHRADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D   T  L+ L+ +K  +L      
Sbjct: 154 DAKVTADLLLLLLQKLRQLPLMTLQ 178


>gi|118471901|ref|YP_888535.1| hypothetical protein MSMEG_4259 [Mycobacterium smegmatis str. MC2
           155]
 gi|118173188|gb|ABK74084.1| DNA polymerase III, epsilon subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 672

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 63/208 (30%), Gaps = 32/208 (15%)

Query: 4   HFVIYDYETFGRDVAL-------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
            FV+ D ET G            D   +   V+V R  E +                 P+
Sbjct: 75  TFVVVDLETTGGRAKATAPGGLCDAITEIGAVKV-RGGEVLGELATL---VDPGRAIPPQ 130

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            V +TGIT         ++A     +  F       ++  +N  FD  + R    R    
Sbjct: 131 IVELTGITTAMVRDAPRIDA----VLPMFLEFARGAVLVAHNAGFDIGFLRAAAERT--- 183

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                      R  +L  ++                D A S +L +LA   G      H 
Sbjct: 184 ------QLTWPRPPVLCTVKLARRVL--------TRDEAPSVRLSELARLFGASTTPTHR 229

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204
           A  D  AT+ ++  + E+      +   
Sbjct: 230 ALDDARATVDVLHGLIERVGNQGVHTLA 257


>gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1445

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/480 (14%), Positives = 135/480 (28%), Gaps = 58/480 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E I+  + F       +      + +T IT
Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 481

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          + +  I QF        +  +N++FD  +      R  Y         
Sbjct: 482 DEMVQAAD----DEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEI------ 531

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  L     +   + H A  D  AT
Sbjct: 532 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVALEHHHRANQDAEAT 578

Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              +  L+     K  E      N     +       T +  ++        N   +  +
Sbjct: 579 GYLMFKLLDAFNDKYHEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A   +Y    +    S   R+   L       +       ++       K+        +
Sbjct: 639 AGI-KYNFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYDFLEI 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDS 358
            P         +    D  +  E LT + +        +     A Y   + +  +DV  
Sbjct: 698 QPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLL 757

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTL 412
               G      +        T                L E  F     A+      P+ +
Sbjct: 758 AAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISNPNKI 804

Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +     + ++  +      +I     +++ L    + E  GD   + +   L   L  +I
Sbjct: 805 NA-MIDEGVQPVQDESFPPKIPHTAERVRKLTYDKAHELYGDPLPDNIQARLDRELDAII 863


>gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7]
 gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7]
          Length = 1440

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/491 (13%), Positives = 144/491 (29%), Gaps = 68/491 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V +D ET G  V  D   +F  V++ +  E I+  ++F                +T I
Sbjct: 402 TYVSFDLETTGLSVIHDGITEFGAVKI-KNGEVIDRLQMF---VNPGKSISSRITNLTSI 457

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T      +  ++A    RI +FF     CI+  +N  FD  +      RN          
Sbjct: 458 TNDMVRNEPTIDA-LLPRIIEFFDD---CILVAHNANFDIGFLNENLRRNNMPEI----- 508

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181
             N   D L + RAI                  S++L ++  +     +   AH A  D 
Sbjct: 509 -TNPIIDSLALARAI-------------LKPMKSYRLGNVCRSYRVNYDDEVAHRADYDA 554

Query: 182 YATLALVWLIREKKPKLFEYL---YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
                +  ++  +  +  +Y          + + K++   +MT L        A   N  
Sbjct: 555 EVLGDVFNMMLHQIMQSGKYNLLDLCELTGDDVYKIVYPYHMTALAL----NKAGLKNMF 610

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
            +   A + +Y  +             + L               L        + +   
Sbjct: 611 KLVSEA-NTKYFHNGSRIPKERLEHYREGLLYGSSCYNGDVFEAALNLSDEKLERAMEFY 669

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
               + P++            D    +++L  ++     L     A  +  +      + 
Sbjct: 670 DYIEIQPLEDYYHLVDRGKLQDTDELIKSLHRIIDCAKKLDKLIVATGDVHFLEVRDKIF 729

Query: 358 SQLYDGFFADVDRQIMDRI--LRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
             ++              +   R    +     L  ++  L           +P  L + 
Sbjct: 730 RDVFISNPTIGIGHRAHPLCDRRNPKAKNPCQYLRTTNEML---------EGYP-YLPQD 779

Query: 416 EKQDW--------------LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLI 457
           E  ++              ++     L   +I+     L+ +    + +  G+   + + 
Sbjct: 780 EVFEYVVTNTNKIADMVEEIKPVHDKLFTPKIDGADENLKKICYDTAHKTYGNPLPQIVE 839

Query: 458 NALYEYLQWVI 468
             L + L  +I
Sbjct: 840 KRLEKELSNII 850


>gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 1445

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/480 (14%), Positives = 135/480 (28%), Gaps = 58/480 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E I+  + F       +      + +T IT
Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 481

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          + +  I QF        +  +N++FD  +      R  Y         
Sbjct: 482 DEMVQAAD----DEAVVIKQFMDFYGNDPLCGHNVQFDVGFVNAALKRCGYPEI------ 531

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  L     +   + H A  D  AT
Sbjct: 532 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVALEHHHRANQDAEAT 578

Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              +  L+     K  E      N     +       T +  ++        N   +  +
Sbjct: 579 GYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A   +Y    +    S   R+   L       +       ++       K+        +
Sbjct: 639 AGI-KYNFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYDFLEI 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDS 358
            P         E    D  +  E LT + +        +     A Y   + +  +DV  
Sbjct: 698 QPPSNYSSLIAEGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLL 757

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTL 412
               G      +        T                L E  F     A+      P+ +
Sbjct: 758 AAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISNPNKI 804

Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +     + ++  +      +I     +++ L    + E  GD   + +   L   L  +I
Sbjct: 805 NA-MIDEGVQPVQDESFPPKIPHTAERVRKLTYDKAHELYGDPLPDNIQARLDRELDAII 863


>gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
           ISDg]
 gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
           ISDg]
          Length = 1527

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/399 (12%), Positives = 104/399 (26%), Gaps = 45/399 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G     D+  +   V++ +    ++    F      +         +T IT 
Sbjct: 498 VVFDIETTGFSSVKDKIIEIGAVKI-QHGTIVDRFSTF---INPEVPIPYHIQKLTSITD 553

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +  +    +E      + +F S    C +  +N  FD  +             +  + N 
Sbjct: 554 EMVIGSRTIE----EILPEFLSFCEGCYLVAHNASFDIGFITK----------KAEFLNI 599

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 +D +                      FKL  +A A  I   N H A  D   T 
Sbjct: 600 PLTVTSVDTVGLARVLLNHLNN----------FKLDTVAKALSISLENHHRAVDDAGCTA 649

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAPVA 244
            +     E   +         N+ +      I+ M      +       R N   +    
Sbjct: 650 EIYLKFLEMLRERGIETLAQINRAEEVTPDVIKKMPTYHAIILCQNDIGRVNLYRMVS-Y 708

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE----VHLNKC 300
            H  Y         S  M+  + L      +        L+      I          + 
Sbjct: 709 SHINYFQRRPRIPKSVLMKHREGLLIGSACEAGELYQAILRNSSEGEIVRLANFYDYYEI 768

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             L    +  +        + +    N  ++           A  +  + +   +V  ++
Sbjct: 769 QPLGNNQFMIESEKIDISSEEELKEINRKIIALGEEYNKPVVATCDVHFLNPEDEVYRRI 828

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
                             +  +  + L    ++  L E 
Sbjct: 829 IMAAKGF-----------SDADNQAPLYFRTTEEMLEEF 856


>gi|297529654|ref|YP_003670929.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           C56-T3]
 gi|297252906|gb|ADI26352.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           C56-T3]
          Length = 909

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 66/205 (32%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   FVI D ET G      DR  Q     V      +E    FF     +         
Sbjct: 1   MATRFVIIDLETTGNGPKKGDRIIQLGMAVV-EDGLIVERFASFF---NPEQPIPLFIQQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I  Q      +  A+ +  I       +      +N+ FD  + +    R  +  + 
Sbjct: 57  LTNINEQMVEGAPL-FADKAGEIAALM---HGAYFVAHNVDFDLPFLQAELERAGWPPFA 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D +++ R +                A S+KL DLA   G+ H   H A +
Sbjct: 113 ------GPTIDTVELARIV-------------LPTAESYKLGDLARQLGLHHDRPHQADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D   T  L   + ++  +L     +
Sbjct: 154 DAEVTAKLFIALLKRLSRLPLMTLE 178


>gi|257784354|ref|YP_003179571.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
 gi|257472861|gb|ACV50980.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
          Length = 342

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 30/193 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V+ D ET G DV      + A ++V    +  E                  A  I 
Sbjct: 75  PESYVVVDLETTGLDVHYCEIIEIAALKV-VDGKITEEFSSL---IHPPREIPSGATAIN 130

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            IT            +   +   F       +IG+N++R+D       F+R  +      
Sbjct: 131 HITNHMVKNAP-TLDKVIPQFDTFVK--GFPLIGHNSLRYDAIVLEENFFRRDFLCDYVW 187

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180
           +       D   + R I                   +KL ++A    ++ H  AH A AD
Sbjct: 188 Y-------DTYKLARQI---------------LEPPYKLINIAKRLNVKQHGKAHRALAD 225

Query: 181 VYATLALVWLIRE 193
            Y T  +   +RE
Sbjct: 226 CYMTYGIYEKMRE 238


>gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
 gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
          Length = 1445

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/491 (13%), Positives = 144/491 (29%), Gaps = 68/491 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V +D ET G  V  D   +F  V++ +  E I+  ++F                +T I
Sbjct: 407 TYVSFDLETTGLSVIHDGITEFGAVKI-KNGEVIDRLQMF---VNPGKSISSRITNLTSI 462

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T      +  ++A    RI +FF     CI+  +N  FD  +      RN          
Sbjct: 463 TNDMVRNEPTIDA-LLPRIIEFFDD---CILVAHNANFDIGFLNENLRRNNMPEI----- 513

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181
             N   D L + RAI                  S++L ++  +     +   AH A  D 
Sbjct: 514 -TNPIIDSLALARAI-------------LKPMKSYRLGNVCRSYRVNYDDEVAHRADYDA 559

Query: 182 YATLALVWLIREKKPKLFEYL---YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
                +  ++  +  +  +Y          + + K++   +MT L        A   N  
Sbjct: 560 EVLGDVFNMMLHQIMQSGKYNLLDLCELTGDDVYKIVYPYHMTALAL----NKAGLKNMF 615

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
            +   A + +Y  +             + L               L        + +   
Sbjct: 616 KLVSEA-NTKYFHNGSRIPKERLEHYREGLLYGSSCYNGDVFEAALNLSDEKLERAMEFY 674

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
               + P++            D    +++L  ++     L     A  +  +      + 
Sbjct: 675 DYIEIQPLEDYYHLVDRGKLQDTDELIKSLHRIIDCAKKLDKLIVATGDVHFLEVRDKIF 734

Query: 358 SQLYDGFFADVDRQIMDRI--LRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
             ++              +   R    +     L  ++  L           +P  L + 
Sbjct: 735 RDVFISNPTIGIGHRAHPLCDRRNPKAKNPCQYLRTTNEML---------EGYP-YLPQD 784

Query: 416 EKQDW--------------LEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLI 457
           E  ++              ++     L   +I+     L+ +    + +  G+   + + 
Sbjct: 785 EVFEYVVTNTNKIADMVEEIKPVHDKLFTPKIDGADENLKKICYDTAHKTYGNPLPQIVE 844

Query: 458 NALYEYLQWVI 468
             L + L  +I
Sbjct: 845 KRLEKELSNII 855


>gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola
           ATCC 35405]
 gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405]
 gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola
           F0402]
          Length = 217

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 67/205 (32%), Gaps = 27/205 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F  +D ET G +   +R  +   V+ D +   I    V       +    PEA  +  IT
Sbjct: 16  FTAFDTETTGTEAKAERVVEIGCVKFDIRG-VIARYNVL---IDPEKPMPPEAGKVNQIT 71

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE       F       ++  +N  FD  +      R            
Sbjct: 72  DEMLAGQPK-FAEVLPDFLDFIRN---TVLVAHNASFDINFINCELERCG------KTKL 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N  +D L   R                 G  S+ LQ+LA   G++ VNAH A+ D    
Sbjct: 122 TNKVFDTLTFAR-------------ETLPGLQSYALQNLATQFGVQAVNAHRAEDDARVC 168

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
           +    +      +  + + DY  K+
Sbjct: 169 MEFFKIAVSHFFEKNKDMLDYYKKD 193


>gi|82703123|ref|YP_412689.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
 gi|82411188|gb|ABB75297.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 463

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 28/190 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI D ET G     DR  + A +R   +  + E  E             P    +TGI+
Sbjct: 6   YVILDLETTGGTPLHDRIIEIALIRF-EEGMESERWETL---VNPGISIPPFITHLTGIS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       + + R++ F    +  ++  +N+RFD  + +N + R            
Sbjct: 62  NGMVKDAP-SFGDIAHRLYGFL---DGAVLAAHNVRFDYGFLKNEYRRMG---------- 107

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +  +L   R                       L  +   +G++    H A  DV   
Sbjct: 108 ALLQHRVLCTARLSRKLY----------PQHKGHGLDAIMQRHGLKTEMRHRAMGDVELV 157

Query: 185 LALVWLIREK 194
            A + + R +
Sbjct: 158 AAYLEMARRE 167


>gi|311030323|ref|ZP_07708413.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. m3-13]
          Length = 844

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   FV+ D ET G      D+  Q   V +    E +E    F           P    
Sbjct: 1   MKQRFVVLDLETTGNTPKKNDKIIQVGAVLI-EDGEIVERFASF---VNPQCTIPPFIEQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I      R     A+ +  + +     +   +  +N+ FD  + ++    + +    
Sbjct: 57  LTNINQDMVGRAP-TFAQIAPMLCEMLKGSS---LVAHNVPFDLSFLQHELKTSGHP--- 109

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                  + +D +++ R                    S+KL DL++   + H N H A +
Sbjct: 110 ---TFSGNTFDTVELARI-------------LLPTQKSYKLTDLSIFYELNHDNPHRADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D  AT  +   + EK   L      
Sbjct: 154 DAEATAIIFLKLLEKIKTLPSITIK 178


>gi|261417986|ref|YP_003251668.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus sp. Y412MC61]
 gi|319767201|ref|YP_004132702.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC52]
 gi|261374443|gb|ACX77186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC61]
 gi|317112067|gb|ADU94559.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC52]
          Length = 909

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 66/205 (32%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   FVI D ET G      DR  Q     V      +E    FF     +         
Sbjct: 1   MATRFVIIDLETTGNGPKKGDRIIQLGMAVV-EDGLIVERFASFF---NPEQPIPLFIQQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I  Q      +  A+ +  I       +      +N+ FD  + +    R  +  + 
Sbjct: 57  LTNINEQMVEGAPL-FADKAGEIAALM---HGAYFVAHNVDFDLPFLQAELERAGWPPFA 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D +++ R +                A S+KL DLA   G+ H   H A +
Sbjct: 113 ------GPTIDTVELARIV-------------LPTAESYKLGDLARQLGLRHDRPHQADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D   T  L   + ++  +L     +
Sbjct: 154 DAEVTAKLFIALLKRLSRLPLMTLE 178


>gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
          Length = 1476

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 69/222 (31%), Gaps = 27/222 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D   +   V++ +  + ++    F                +TG
Sbjct: 449 DTYVVFDLETTGLSPVNDSIIEIGAVKI-QNKKVVDRFSTF---VNPKIPIPYNIEQLTG 504

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     +    +E      + +F    +  ++  +N  FD  + R             + 
Sbjct: 505 IDDSMVVDADTIEN----ILPEFLKFCDGAVMVAHNAEFDVTFIRE---------KTKTI 551

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   ++D +    A  P+  +          F L  +A A  +  ++ H A  D  
Sbjct: 552 LGKAFECTVVDTVSLARALIPNLGK----------FTLDHVAKALNVSLLHHHRAVDDAE 601

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
               +   +  +      +  D  N+ +   +  I+      
Sbjct: 602 CCADIFLALVARLEMRNIFNLDEINEIEEFNINAIKKAKTYH 643


>gi|302392350|ref|YP_003828170.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
           arabaticum DSM 5501]
 gi|302204427|gb|ADL13105.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
           arabaticum DSM 5501]
          Length = 1440

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 139/470 (29%), Gaps = 43/470 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++++D ET G +   +   +    +V +    I+           +       V +TGI 
Sbjct: 428 YIVFDLETTGFNPYHNEIIEIGAAKV-KDGRIIDRFGTL---VDPETEIPERIVELTGID 483

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E      +++F        I  +N+ FD  +  N                
Sbjct: 484 NSMVAGKPKKE----EALNEFLDFVGEATIVAHNLSFDRNFINNKLQAIG------ESAL 533

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            NS  D L++ RA                   SFKL  LA        N H A  D   T
Sbjct: 534 DNSALDTLNLARA--------------LLDLKSFKLNRLAKEFDKSLDNHHRAVDDAEVT 579

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             ++  + +   +         N  +L   ID + + P   V  +               
Sbjct: 580 AEILLELLDILKEDGVTHLTEVN--ELSSEIDYKRLRPYHAVILVKNQQGLKNLYKLVSK 637

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH-LNKCPIL 303
            H      V     S  ++  + L      +        + G     I+E+        +
Sbjct: 638 AHIETFHRVPRILKSDLLKRREGLIIGSACEAGQLYQAIVNGKDESTIREIAEFYDYLEI 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            P+   +           ++  E N  + +    L     A  +  +      +  ++  
Sbjct: 698 QPLGNNQFLIENEQVDSKEKLKEINHQIYQLGQKLNKPVVATGDVHFLDPEDKIYREILM 757

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
                 D +    +     E++      F     PE+       N P  + E+ ++  ++
Sbjct: 758 EGQGFDDAEDQAPLYYRTTEEMLDEFDYFE----PEVAKEVVIDN-PKQIVEEVEE--VK 810

Query: 423 HRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
                L    IE    +++ +    +    GDE  E ++N L + L  +I
Sbjct: 811 PVPDGLFTPEIEGAVEEVKQMTYNKARSIYGDELPELVVNRLEKELDAII 860


>gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0860]
 gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0860]
          Length = 929

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 89/281 (31%), Gaps = 38/281 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L+ LI+EK   L           ++ +L           +   +   +     + P  
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP-- 218

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK 285
                   V G  L        +    Q +    T   + K
Sbjct: 219 ----AYQVVSGIALRKKEDPLFEETFYQTSTYPKTKKAKEK 255


>gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 1421

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/398 (14%), Positives = 117/398 (29%), Gaps = 36/398 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           TN FV++D ET G    +D   +   V++      ++                   V +T
Sbjct: 403 TNSFVVFDIETTGFSPQVDEITEIGAVKI-VDGVIVDRFSQL---VNPMIKIPDRVVELT 458

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+      +  ++    + I  F       ++  +N  FD  + R        D  +++
Sbjct: 459 GISNDFVKDEPTID----KVIVDFNDFCKNSVLVAHNAGFDISFIRR-------DMLKYN 507

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                +  D L + RAI                   F L  L+   G+  VNAH A  D 
Sbjct: 508 LSFNFTVLDTLSLARAI-------------IKDIKRFNLTALSKKLGVSLVNAHRAVNDA 554

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT  +   + +   KL    +   NK +      I   + +  +       ++   L++
Sbjct: 555 EATAEVFIKMLDILKKLGIKTFCDINKLKKDIDSSILFESSISLLVKNNVGLKNLYKLVS 614

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
               +   + + +  +L    R    + S   +  LF +   ++    +           
Sbjct: 615 ESHMNYVNRVAKVPRSLINKYREGILVGSGNSSSELFKAVFNMESEENI-RNIARYYDYI 673

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            + P++            D+         L       +         Y    +D  ++  
Sbjct: 674 EIQPLENNLNYIENNLVKDYDTLKFINKKLYDLGKELNIPVVATGDVYYLDEKDDITRRV 733

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
                         I +        L    +D  L E 
Sbjct: 734 ILNGQTGRPPENAHIPQ-------KLFFRTTDEMLEEF 764


>gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
 gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
          Length = 695

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 56/202 (27%), Gaps = 29/202 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   + D   Q A VR+          EV            P +  + GI
Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRV--EAEVLDTLVNPHRPIPPSSTEVHGI 552

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +  E  RR H+F       ++  +N  FD  + R                
Sbjct: 553 TDAMVAEAPDI-VEVGRRFHKF---AEGAVLVAHNAPFDMEFLRRAEPLIGR-------- 600

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181
                       R         +        +    L  L    G  I     H A  D 
Sbjct: 601 ------------RFDNPILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDT 648

Query: 182 YATLALV-WLIREKKPKLFEYL 202
            AT      L+   + + FE  
Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670


>gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
          Length = 695

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 56/202 (27%), Gaps = 29/202 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   + D   Q A VR+          EV            P +  + GI
Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRV--EAEVLDTLVNPHRPIPPSSTEVHGI 552

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +  E  RR H+F       ++  +N  FD  + R                
Sbjct: 553 TDAMVAEAPDI-VEVGRRFHKF---AEGAVLVAHNAPFDMEFLRRAEPLIGR-------- 600

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181
                       R         +        +    L  L    G  I     H A  D 
Sbjct: 601 ------------RFDNPILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDT 648

Query: 182 YATLALV-WLIREKKPKLFEYL 202
            AT      L+   + + FE  
Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670


>gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
 gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
          Length = 1438

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 96/330 (29%), Gaps = 31/330 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+ +D ET G  V  D   +F  V++ +  ++I   +        +     +   +T I
Sbjct: 396 TFISFDLETTGLSVMDDDITEFGAVKI-KNGQEIGRLQSL---IKPNKRISQKITNLTHI 451

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       +  E+  +I +FF      +I  +N  FD  +   I  R+ Y+       
Sbjct: 452 TNEDVKDAPTI-QEYIPKILEFF---GDDVIVAHNATFDVGFLNEILQRHGYE------K 501

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181
             N   D L +                       F+L ++A       +  +AH A  D 
Sbjct: 502 LKNPAIDSLALA-------------WKLLPQLKGFRLGNVARYYRIAYDGDDAHRADYDA 548

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
                +  ++     +  +Y     N         I     +  ++      ++   L++
Sbjct: 549 EVLAGVFNMMLHDMMQNQQYSLLDMNAMPCESAYKIVRPKHMCVLAKDKTGLKNMFKLVS 608

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
                   K S I        R      S      +F              K +      
Sbjct: 609 EANTTYYQKTSRIPRERLEFYREGLLFGSGCYNSEIFDLAMTRSIEELK--KAMAFYDYI 666

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLL 331
            ++P+D C            +     L  +
Sbjct: 667 EILPLDICDYFVERGRVDTKEDLQRILRRI 696


>gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1446

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/402 (13%), Positives = 125/402 (31%), Gaps = 48/402 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     ++  +   +++ +  + I+      C    +       V +T IT
Sbjct: 423 YCVLDLETTGFSPLTEKITEVGIMKL-KDGKVIDQFS---CFVNPEKPIPARVVEVTNIT 478

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    +E    +   +        ++  +N  FD  + ++             ++ 
Sbjct: 479 DYMVQDAETIE----KVFPKMLEFIEGSVLVAHNAEFDIGFLKHNAKVLG-------YNF 527

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L + + I+                 S+KL  +A   GI+   AH A  DV  T
Sbjct: 528 DFTYLDTLSLAKEIF-------------PDYKSYKLGRIAKNLGIKVDVAHRALDDVDTT 574

Query: 185 LALVWLIREKKPKLFEYLYD---YRNKNQLRKLIDIQNMTPLVHV--SGMFGASRSNTAL 239
           + +  ++ EK  +      +     + ++  K  + + +     +  +  +   ++   L
Sbjct: 575 VKVFNIMLEKLKEKGVQTLEDVDTYSSDEEAKKSEYKKLKTYHAIILAKDYVGLKNLYKL 634

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLN 298
           ++       YK   I  ++         L S      LF     L G     I+ +    
Sbjct: 635 VSYSHLDYFYKKPRILKSVYKKYSEGLILGSACSEGELF--QAILHGKSDDEIETIAKDY 692

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
               + P+        +    D +   E N  ++     L     A  +  +     ++ 
Sbjct: 693 DYLEIQPLGNNDYLVRKEEVPDKEYIKEINRKIVALGEQLNKPVVATGDVHFLDPEDEIY 752

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
            ++ +                   ++ + L L  +D  L E 
Sbjct: 753 RRILEAGQGYD-----------DADKQAPLYLKTTDEMLEEF 783


>gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC
           27029]
 gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC
           27029]
          Length = 584

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V R  E++    V            P    +TGI
Sbjct: 31  TFVVVDLETTGGAPDGGGITEIGAVKV-RGGEELG---VLATLVNPGVPIPPFITVLTGI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    L    +E    + +  F    +  ++  +N  +D  + +    ++ Y        
Sbjct: 87  TQAMLLPAPPIE----QVLPSFLEFVSDAVLVAHNAPYDVGFLKAACAKHGYRWP----- 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + R +              D   + KL  LA          H A  D  A
Sbjct: 138 -NPRVLDTAALARRV-----------LTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKA 185

Query: 184 TLALVWLI 191
           T+ ++  +
Sbjct: 186 TVDVLHGL 193


>gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1411

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 70/480 (14%), Positives = 135/480 (28%), Gaps = 58/480 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E I+  + F       +      + +T IT
Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 447

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          + +  I QF        +  +N++FD  +      R  Y         
Sbjct: 448 DEMVQAAD----DEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEI------ 497

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  L     +   + H A  D  AT
Sbjct: 498 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVALEHHHRANQDAEAT 544

Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              +  L+     K  E      N     +       T +  ++        N   +  +
Sbjct: 545 GYLMFKLLDAFNDKYHEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 604

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A   +Y    +    S   R+   L       +       ++       K+        +
Sbjct: 605 AGI-KYNFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYDFLEI 663

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDS 358
            P         +    D  +  E LT + +        +     A Y   + +  +DV  
Sbjct: 664 QPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLL 723

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTL 412
               G      +        T                L E  F     A+      P+ +
Sbjct: 724 AAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISNPNKI 770

Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +     + ++  +      +I     +++ L    + E  GD   + +   L   L  +I
Sbjct: 771 NA-MIDEGVQPVQDESFPPKIPHTAERVRKLTYDKAHELYGDPLPDNIQARLDRELDAII 829


>gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
 gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
          Length = 318

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 103/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRILGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + K    +    NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCAAIEEKGNRKV----NKAVLDETAVYEAVKEMLVCNKRNVEWLRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +           K + TS           +K    N   +L 
Sbjct: 220 -DIKAFYPVMRVKVKGRKKYVLTEILEDGVKEICTSLK-----CEPALKSEVGNTRIMLN 273

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++   K         +   L+ L   ++     D     Y  
Sbjct: 274 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315


>gi|119717352|ref|YP_924317.1| hypothetical protein Noca_3128 [Nocardioides sp. JS614]
 gi|119538013|gb|ABL82630.1| DNA polymerase III, epsilon subunit [Nocardioides sp. JS614]
          Length = 601

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 63/202 (31%), Gaps = 26/202 (12%)

Query: 4   HFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F + D ET G          +   V+V R  E +   +                  +TG
Sbjct: 29  TFCVVDLETTGGSAEGGAMITEIGAVKV-RGGEVLGEFQTL---VNPRTEIPAFIAVLTG 84

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+         VEA     +  F       ++  +N  FD  + R    +          
Sbjct: 85  ISNSMVADAPPVEA----ALPAFLEFAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPG--- 137

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 ++++D  R                D A + KL  LA A G      H A +D  
Sbjct: 138 ------FEVVDTARLARRV--------VSRDDAPNCKLSSLAKAFGSTTTPNHRALSDAR 183

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT+ ++  + E+   +  +  +
Sbjct: 184 ATVDVLHGLMERLGGVGVHTLE 205


>gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
 gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
          Length = 1421

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/400 (12%), Positives = 108/400 (27%), Gaps = 44/400 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G   A ++  +   V++    + ++           +     +   +T IT
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDN-KIVDEFNQL---INPEIPIPEKITELTSIT 457

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       ++A     + +F      C +  +N  FD  + +        +        
Sbjct: 458 NEMVKDMPKIDA----VLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPV------ 507

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L   RA              +    + KL  L     +   N H A  D  AT
Sbjct: 508 -RTYIDTLAFARA-------------LEPHLKNHKLDTLTKKYNVNLFNHHRACDDARAT 553

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
             +   +     +         N+      +   ++ T  ++   + G       + A  
Sbjct: 554 GEVFICMVNNLEQRGFKFDININQMDSDWSISKRESHTATIYAKNLIGLKNLYQLVTASN 613

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH--LNKCP 301
             +   +  +    L+            +  + +              I   +  L   P
Sbjct: 614 LKYFSREGGIPKSELNKRREGLVIGSGNENGELIKAILSFESDEKIDEIISRYDFLEVQP 673

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            L       K          +   +   L  +   L       Y K +        + + 
Sbjct: 674 PLYYDGVKSKSMSFNLRSCEELTRKLYNLSLKHNKLL--VADSYAKYFEKEDYIFRNIIL 731

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
           +G    +             E+  TL    +D  + E  F
Sbjct: 732 EGQPRKIYG-----------EKFPTLFFRTTDEMMNEFVF 760


>gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 1445

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 70/480 (14%), Positives = 135/480 (28%), Gaps = 58/480 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E I+  + F       +      + +T IT
Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 481

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          + +  I QF        +  +N++FD  +      R  Y         
Sbjct: 482 DEMVQAAD----DEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEI------ 531

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  L     +   + H A  D  AT
Sbjct: 532 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVPLEHHHRANQDAEAT 578

Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              +  L+     K  E      N     +       T +  ++        N   +  +
Sbjct: 579 GYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A   +Y    +    S   R+   L       +       ++       K+        +
Sbjct: 639 AGI-KYNFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYDFLEI 697

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDS 358
            P         +    D  +  E LT + +        +     A Y   + +  +DV  
Sbjct: 698 QPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLL 757

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTL 412
               G      +        T                L E  F     A+      P+ +
Sbjct: 758 AAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISNPNKI 804

Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +     + ++  +      +I     +++ L    + E  GD   + +   L   L  +I
Sbjct: 805 NA-MIDEGVQPVQDESFPPKIPHTAERVRKLTYDKAHELYGDPLPDNIQARLDRELDAII 863


>gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 695

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 57/202 (28%), Gaps = 29/202 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   + D   Q A VR+                P     P   +  + GI
Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVFDTLVNPRRPIPPS--STEVHGI 552

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E  R+ H+F       ++  +N  FD  +                  
Sbjct: 553 TDAMVADAP-DMTEVGRQFHKF---AEGAVLVAHNAPFDMEFL----------------- 591

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181
               R +LL   R         +             L  LA   G  I     H A  D 
Sbjct: 592 ---RRAELLIDRRFDNPILDTVLLSAVLFGQTEVHSLDALAHRLGITIPEEARHTAIGDT 648

Query: 182 YATLALV-WLIREKKPKLFEYL 202
            AT      L+   + + FE  
Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670


>gi|240143784|ref|ZP_04742385.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257204219|gb|EEV02504.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 228

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 2/157 (1%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              V +D ET G D   D+  + A   V     +++     FCK  +      + V +T 
Sbjct: 5   KKIVFFDTETTGLDPEKDQIIELAAALVTENGIELK--IDAFCKLPEGEKIPEKIVELTH 62

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT       G+   E  R         +  ++  +NI+FD  +   +F R          
Sbjct: 63  ITDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPKAPKL 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
              +S     D     +  +     +   D    S +
Sbjct: 123 RALDSLTVYKDRAAYPHKLANAIEHYGLADKVQNSHR 159


>gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum
            70/3]
          Length = 1605

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 69/479 (14%), Positives = 127/479 (26%), Gaps = 56/479 (11%)

Query: 3    NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            +  +++D ET G   A +R  +   V++ R  E ++    F                +TG
Sbjct: 589  DDIIVFDIETTGLHPANERITEIGAVKL-RNMEIVDRFSTF---VNPMMPIPSNITELTG 644

Query: 63   ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            IT            + +  +  F +      +  +N +FD  + R+   R          
Sbjct: 645  ITDDMVADAPT--EDVA--VSDFMAFCGNSPVCAHNAKFDVSFIRSAATRMGK------- 693

Query: 123  DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               N   D L + +A                G  ++KL  +A    +   + H A AD  
Sbjct: 694  SFDNPVVDTLSIAKAA-------------LKGIKNYKLDTIAKYFKLGDFDHHRAVADAE 740

Query: 183  ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241
                +   I     K  +  Y          +   +  T    +        ++   LI+
Sbjct: 741  MLCMIYMHIVNDTRKTAKLEYIGDFNTAFGSVDIKKLPTYHQIILVKNKVGLKNLYRLIS 800

Query: 242  PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
                   YK   I  +L    R    + S   A  LF +  E K       +        
Sbjct: 801  ASNLDYFYKKPRIPKSLLSQYREGLIIGSACEAGELFRAILE-KESQEKIEEIASFYDYL 859

Query: 302  ILMPIDYCKKEHFERWGIDHKRCLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
             + PI               +   +     +       +                     
Sbjct: 860  EIQPIGNNMFLLRNGKVSSEEDLRDLNRAIVELGDRLGKPVVATCDVHFKDPEDAVFREV 919

Query: 360  LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
            L  G          +      P     L    +D  L E    Y        +       
Sbjct: 920  LQAGQ-------GYEDFANQPP-----LYFRTTDEMLEEFA--YLGEEKAKEVVITNTNR 965

Query: 420  WLEHRK--KMLTRSR----IEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +  +  + +        I+    +LQ L    +  + GD   E +   L + L  +I
Sbjct: 966  IADMIEVVRPIPTGTYTPHIDGADEELQQLCWDRAHAWYGDNLPETVEKRLKKELDSII 1024


>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
 gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
          Length = 1431

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/398 (14%), Positives = 111/398 (27%), Gaps = 41/398 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV++D ET G     +   +   VRV    + ++           +     E   ITG
Sbjct: 415 DTFVVFDIETTGLSHLKNNITEIGAVRV-ESGKIVDVFNGL---VNPEQEISQEITEITG 470

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +      ++ +E   +  +F       +   +N  FD  + +    R   +      
Sbjct: 471 ITNEMVADKPLI-SEIMPKFLEF---SKNAVFVAHNAEFDISFIKTNCKRLNLEFNPT-- 524

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    +D M    A  P             + KL  L    G+  +N H A  D  
Sbjct: 525 --------FIDTMGFARAILPHL----------KNHKLNTLCKELGVNLLNHHRASFDAE 566

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           A   ++  + +   K  +   +  N  + +  +        +       A      +++ 
Sbjct: 567 ACAGILLELIKIVEKEGKVFDENINNIETKWPVAKNISYNSIIYVKKMEALSGFYKMVSE 626

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                  + +    +   + R    + S      LF +  E K      ++         
Sbjct: 627 GLMKYFRRVAGFPKSRLKEYREGLLIGSGNWDGELFRAFIEEKSEE-EILEIAKFYDFFE 685

Query: 303 LMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + PI   K   F    +      E N  +      L     A  N  Y   +  +   + 
Sbjct: 686 IQPISNLKHLFFRGKVLSIDDLKEINKKIYELGKKLDKLVVATGNVKYLDKNDYIFRNVI 745

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
                  +            E+  +     +D    E 
Sbjct: 746 LYGQGRKNL-----------EKEGSFYFRTTDEMFDEF 772


>gi|167753685|ref|ZP_02425812.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216]
 gi|167658310|gb|EDS02440.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216]
          Length = 257

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 27/197 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    + +D ET G D+A DR  + + V+V    E+I    V   +         EA  I
Sbjct: 5   LKRPIIFFDLETTGIDIARDRIVEISMVKVMPDGEEI----VRTRRINPGMPIPAEATAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +      +   + ++ + QF         G+N+ RFD       F R   D    
Sbjct: 61  HGITDEDVKDCPL-FPQIAKSLAQFIE--GCDFGGFNSNRFDLPMLVEEFMRAGVDVDFR 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+ ++   +   +                 +       G +  +AH A+AD
Sbjct: 118 KRKF----IDVQNIFHKMEQRTL----------------VAAYKFYCGKDLADAHSAEAD 157

Query: 181 VYATLALVWLIREKKPK 197
             AT  ++    ++  +
Sbjct: 158 TLATYEVLKAQLDRYGE 174


>gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 318

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 103/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCAAIEEEGNRKV----NKAVLDETAVYEAVKEMLVCNKRNVEWLRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +           K + TS           +K    N   +L 
Sbjct: 220 -DIKAFYPVMRVKVKGRKKYVLTEILEDDVKEICTSLK-----CEPALKSEVGNTRIMLN 273

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++   K         +   L+ L   ++     D     Y  
Sbjct: 274 SLEDVMKL-ESYILEQYDFVLQVLHDYKENEMNADEKLKEYLN 315


>gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
 gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
          Length = 318

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +        +  K + TS           +K    N   +L 
Sbjct: 220 -DIKAFYPVMRLKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 273

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++   K         +   L+ L   ++     D     Y  
Sbjct: 274 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315


>gi|56420711|ref|YP_148029.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus kaustophilus HTA426]
 gi|56380553|dbj|BAD76461.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 909

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 66/205 (32%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   FVI D ET G      DR  Q     V      +E    FF     +         
Sbjct: 1   MATRFVIIDLETTGNGPKKGDRIIQLGMAVV-EDGLIVERFASFF---NPEQPIPLFIQQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I  +      +  A+ +  I       +      +N+ FD  + +    R  +  + 
Sbjct: 57  LTNINEEMVEGAPL-FADKAGEIAALM---HGAYFVAHNVDFDLPFLQAELERAGWPPF- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D +++ R +                A S+KL DLA   G+ H   H A +
Sbjct: 112 -----SGPTIDTVELARIV-------------LPTAESYKLGDLARQLGLHHNRPHQADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D   T  L   + ++  +L     +
Sbjct: 154 DAEVTAKLFIALLKRLSRLPLMTLE 178


>gi|153815178|ref|ZP_01967846.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
 gi|145847437|gb|EDK24355.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
          Length = 279

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 60/204 (29%), Gaps = 28/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   ++ +D ET G D   +   +   ++V R  +  E    F        L  P    +
Sbjct: 35  MLKSYIAFDLETTGLDPMNNEIIEIGALKV-RDGKVSERFMEF---IKPQELISPAITGL 90

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+                 I  F       I+  +NI FD  +++    R      + 
Sbjct: 91  TGISNDMVASA----RPARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKM 146

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + + ++                 S  L  L     IE+  AH A  D
Sbjct: 147 G-------IDTLKIAKKVH-------------PELESKSLSALCEHYKIENKAAHRAYFD 186

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  L   +           + 
Sbjct: 187 ALATAKLYQTLSHYFEPDNPKTFK 210


>gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1454

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/400 (12%), Positives = 113/400 (28%), Gaps = 43/400 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FVI+D ET G   + ++  +   V++ R  + I++   F      +         +TG
Sbjct: 434 DEFVIFDLETTGLSSSSNKIIEIGAVKI-RNGKIIDTFSSF---VNPETDIPEHITELTG 489

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT              +  + QF     + I+  +N  FD  +  +       +      
Sbjct: 490 ITTTDIADAPT----IAAVLPQFVEFCASAILVAHNADFDMGFILHNTRDLAIEFN---- 541

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               +  D + + R                    + KL ++A    +   N H A  D  
Sbjct: 542 ---KTYIDTVSMARI-------------LLPNLGNAKLSNIANKLKVSLKNHHRAVDDAS 585

Query: 183 ATLALV-WLIREKKPKLFEYL--YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           AT  +    I     +    L   +  +      +  +     ++ V        +   L
Sbjct: 586 ATAEIFLKFIEMLAQREIRNLDQLNELSNTSAEAIKKLPTYXGIILVKNEI-GRINLNKL 644

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
           ++        +   +  +L    R    + S   A  +F++       +   +      +
Sbjct: 645 VSASHLDYFARRPRMPKSLIAQHREGLIIGSACEAGEVFSALLRDSNNIESIVDFYDYLE 704

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
               M  ++  +               N  +++       R  A  +  +     ++  +
Sbjct: 705 IQPTMNNEFMIRSDKHAATSRKDLEDYNKRIVQLGEKCGKRVVATCDVHFLDPEDEIYRR 764

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           +   +                 +    L    +D  L E 
Sbjct: 765 ILMDYKGFK-----------DADLQPPLYFRTTDEMLDEF 793


>gi|154487101|ref|ZP_02028508.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis
           L2-32]
 gi|154084964|gb|EDN84009.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis
           L2-32]
          Length = 256

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M +++   D ET G   + DR  +   +RV R    ++                 E   +
Sbjct: 82  MVDNYTSIDLETTGFSPSDDRIVEIGAIRV-RNGRPVKRYSQL---INPQRPLPEEITRL 137

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G+T         V+ +      +F    N  +IG+N   FD  +      R        
Sbjct: 138 NGLTDADLRNQPTVD-QVLPDFIRFI--GNDTLIGHNINEFDAAFLLANTTRLGMRHI-- 192

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
               GN   D L + RA+Y                   +L D+    GI    +H A  D
Sbjct: 193 ----GNKTIDTLPLDRALY-------------PEEPKHRLVDIIRRFGIAQTESHRAADD 235

Query: 181 VYATLALVWLIREKKPKL 198
              T      ++      
Sbjct: 236 ALQTAQCYETMKAYMKAN 253


>gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 205

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 71/229 (31%), Gaps = 34/229 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+I D ET G +       + A +RV      ++       KP+  ++P      +TGI
Sbjct: 10  SFLIVDLETTGLNPVNSEIIEIAALRV-EGGIVVDKFHTL-VKPSIGFIPT-YITKLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E        QF       II  +N +FD  +  ++ Y+           
Sbjct: 67  TNALVVDKPTIE----EVFPQFLKFSENSIIVAHNAQFDMSFLNSVSYQ------ITGRS 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N      ++ +                    S  L +LA    I +   H A  D   
Sbjct: 117 IQNPVLCTQNLAK-------------RLFPDLPSKSLVNLAYHFNIPYNKKHRALEDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA 232
           T  L   I +             N N++  L+ + N   L   S     
Sbjct: 164 TYELFKKIID--------YLYMFNINKVMDLVRLSNGKDLNQTSKRRRY 204


>gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 1411

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 70/480 (14%), Positives = 135/480 (28%), Gaps = 58/480 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E I+  + F       +      + +T IT
Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 447

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          + +  I QF        +  +N++FD  +      R  Y         
Sbjct: 448 DEMVQAAD----DEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEI------ 497

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  L     +   + H A  D  AT
Sbjct: 498 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVPLEHHHRANQDAEAT 544

Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              +  L+     K  E      N     +       T +  ++        N   +  +
Sbjct: 545 GYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 604

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A   +Y    +    S   R+   L       +       ++       K+        +
Sbjct: 605 AGI-KYNFKGLRTPKSELRRLHAGLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYDFLEI 663

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDS 358
            P         +    D  +  E LT + +        +     A Y   + +  +DV  
Sbjct: 664 QPPSNYSSLIADGLIADEAQLEEILTNIYKLGRELNKPVVATSDAHYIDKHEAIYRDVLL 723

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----FPHTL 412
               G      +        T                L E  F     A+      P+ +
Sbjct: 724 AAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISNPNKI 770

Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
           +     + ++  +      +I     +++ L    + E  GD   + +   L   L  +I
Sbjct: 771 NA-MIDEGVQPVQDESFPPKIPHTAERVRKLTYDKAHELYGDPLPDNIQARLDRELDAII 829


>gi|145580424|pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
 gi|145580425|pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
          Length = 186

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 55/195 (28%), Gaps = 28/195 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D+ET G D  +D   +   V++ +  + ++                 ++  ITGI
Sbjct: 13  TFVVLDFETTGLDPQVDEIIEIGAVKI-QGGQIVDEYHTL---IKPSREISRKSSEITGI 68

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          E       F       II  +N  FD  + R    +     +   + 
Sbjct: 69  TQEMLENK-RSIEEVLPEFLGFLEDS---IIVAHNANFDYRFLRLWIKKVMGLDWERPY- 123

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                               D +          S+ L  +    G+     H A  D   
Sbjct: 124 -------------------IDTLALAKSLLKLRSYSLDSVVEKLGLGPFRHHRALDDARV 164

Query: 184 TLALVWLIREKKPKL 198
           T  +     E   K 
Sbjct: 165 TAQVFLRFVEMMKKE 179


>gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 695

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 56/202 (27%), Gaps = 29/202 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   + D   Q A VR+          EV            P +  + GI
Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRV--EAEVLDTLVNPHRPIPPSSTEVHGI 552

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +  E  RR H+F       ++  +N  FD  + R                
Sbjct: 553 TDAMVAEAPDI-VEVGRRFHKF---AEGAVLVAHNAPFDMEFLRRAEPLIGR-------- 600

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181
                       R         +        +    L  L    G  I     H A  D 
Sbjct: 601 ------------RFDNPILDTVLLSAVLFGQSDVHSLDALTHRIGITIPEEARHTAIGDT 648

Query: 182 YATLALV-WLIREKKPKLFEYL 202
            AT      L+   + + FE  
Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670


>gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1346]
          Length = 929

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|317502363|ref|ZP_07960529.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089964|ref|ZP_08338855.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896236|gb|EFV18341.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403102|gb|EGG82665.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 245

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 60/204 (29%), Gaps = 28/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   ++ +D ET G D   +   +   ++V R  +  E    F        L  P    +
Sbjct: 1   MLKSYIAFDLETTGLDPMNNEIIEIGALKV-RDGKVSERFMEF---IKPQELISPAITGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+                 I  F       I+  +NI FD  +++    R      + 
Sbjct: 57  TGISNDMVASA----RPARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKM 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + + ++                 S  L  L     IE+  AH A  D
Sbjct: 113 G-------IDTLKIAKKVH-------------PELESKSLSALCEHYKIENKAAHRAYFD 152

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  L   +           + 
Sbjct: 153 ALATAKLYQTLSHYFEPDNPKTFK 176


>gi|167949795|ref|ZP_02536869.1| Exodeoxyribonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 142

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 337 LRDRFKAIYNKPYTSSSQDVDSQLYDGFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRR 395
           ++ +   ++         D D  LY G F ++ DR+ M +I  T  +QL+ L+  F D R
Sbjct: 1   MQAKISRVHQMKQFEPQTDPDLSLYSGPFFSEDDRRRMQQIRETPVDQLAGLHFAFDDAR 60

Query: 396 LPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKG 449
           LPE+ FRYRARN+P TL+E E+Q W E+R+  L  +       ++EY  +L  L+ +   
Sbjct: 61  LPEMLFRYRARNWPETLNETERQRWDEYRQTRLFDADGGGAIQLDEYLAQLDLLAADEGL 120

Query: 450 DEGKEGLINALYEYLQWVI 468
              +  L+  L E+ + V 
Sbjct: 121 SAERRALLPKLLEWAERVA 139


>gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 1424

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 65/473 (13%), Positives = 136/473 (28%), Gaps = 43/473 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+  +F+       +  +N++FD  +      R   D        
Sbjct: 463 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L       +       ++       ++  +     + 
Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
           P    +    ++   D K   E +T + +            +  +    +D   +     
Sbjct: 680 PPAAYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739

Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARNFPHTLSEKEKQDWLE 422
               +R            +L  L+   +   L    F     A       +         
Sbjct: 740 AQKANRGKNY--------ELPDLHFYTTQEMLDAFSFLNPKIAEEIVIKNTNIIADKIEN 791

Query: 423 H--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
               K  L    IE    +++ L    + E  G+   + + + L   L+ +I 
Sbjct: 792 VEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844


>gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis PC1.1]
 gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4248]
 gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0635]
 gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis PC1.1]
 gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4248]
 gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0635]
 gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1341]
          Length = 929

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0027]
          Length = 929

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 929

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0855]
 gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0855]
          Length = 929

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|167746785|ref|ZP_02418912.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
 gi|167653745|gb|EDR97874.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
          Length = 1475

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 88/289 (30%), Gaps = 30/289 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   DR  +   V+V    E  E+   F            +   +T IT
Sbjct: 449 FVVFDIETTGFNSQTDRIIEIGAVKV-IDGEITETFSEF---INPQIPIPFKITQLTTIT 504

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +    ++A     + +F       ++  +N  FD  +      R   D +      
Sbjct: 505 DEMVMNADTIDA----VLPRFLEFCGDSVLVAHNAGFDTGFIHENAKRLDLDFHPT---- 556

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D +    +      +          F L +L     I+    H A  D  AT
Sbjct: 557 ------IVDTLGLSRSLMTHLAK----------FTLDNLCKNLNIKLETHHRAVDDATAT 600

Query: 185 LALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             +     +   +   +  D  N+        I        + +        +   L++ 
Sbjct: 601 GKIFIKFVQMLEEKEIFDLDQVNEFVAGSEDFIKKGRTYHGIILVKNNTGRVNLNRLVSE 660

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291
                  +   +  +L    R    + S   A  L+++  + +    + 
Sbjct: 661 SHVRYFNRRPRMPKSLINKYREGLIIGSACEAGELYSAIVDQRSEEEIA 709


>gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0411]
 gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0411]
 gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4000]
          Length = 929

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0109]
 gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0109]
 gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1302]
          Length = 929

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1]
          Length = 929

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|315038988|ref|YP_004032556.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
 gi|325957414|ref|YP_004292826.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
 gi|312277121|gb|ADQ59761.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
 gi|325333979|gb|ADZ07887.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
 gi|327184122|gb|AEA32569.1| DNA polymerase III [Lactobacillus amylovorus GRL 1118]
          Length = 318

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 68/206 (33%), Gaps = 24/206 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ + D ET G     DR  +   V+V R  + ++        P ++ +P      + GI
Sbjct: 32  NYTMLDIETTGLSPYRDRITELGAVKV-RNGQIVDQYTNLIKFPKNNKVP-AFITKLNGI 89

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++ + +G+   +  +   +F    +  IIGYN               NF       + 
Sbjct: 90  TEEQIVNEGIPAEQAIKEFREFID--DDIIIGYNVNFDL----------NFLYDLSQKYK 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +DV+R   A+                 +L D     GI  V  H   AD   
Sbjct: 138 LPILNNDYVDVLRLARAYY----------PRERHNRLIDCMQRAGIAQVEEHHGLADSLD 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209
           T+ +                  + KN
Sbjct: 188 TIKVYNDFSAHFTDDLLEATRNKIKN 213


>gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 1402

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 69/484 (14%), Positives = 134/484 (27%), Gaps = 66/484 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E I+  + F       +      + +T IT
Sbjct: 383 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 438

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          + +  I QF        +  +N++FD  +      R  Y         
Sbjct: 439 DEMVQAAD----DEAVVIKQFMDFYGNDPLCGHNVQFDVGFVNAALKRCGYPEI------ 488

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  L     +   + H A  D  AT
Sbjct: 489 SQPVVDTLEVSRLLH-------------PEQSRHTLDSLCRKYNVALEHHHRANQDAEAT 535

Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
              +  L+     K  E      N     +       T +  ++        N   +  +
Sbjct: 536 GYLMFKLLDAFNDKYQEDDLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSL 595

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD----ELKGLVPVPIKEVHLNK 299
           A             L       + L +  L     +  +     ++       K+     
Sbjct: 596 AGIKYNFK-----GLRTPKSELRRLHAGLLYGSSCSQGEVFIAMMQKGYEEAKKKAEFYD 650

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQ 354
              + P         +    D  +  E LT + +        +     A Y   + +  +
Sbjct: 651 FLEIQPPSNYSSLIADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYR 710

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN----F 408
           DV      G      +        T                L E  F     A+      
Sbjct: 711 DVLLAAQRGNPNRNKQHPDLHFYTTQ-------------EMLDEFSFMGEDIAKEVVISN 757

Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYL 464
           P+ ++     + ++  +      +I     +++ L    + E  GD   + +   L   L
Sbjct: 758 PNKINA-MIDEGVQPVQDESFPPKIPHTAERVRKLTYDKAHELYGDPLPDNIQARLDREL 816

Query: 465 QWVI 468
             +I
Sbjct: 817 DAII 820


>gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
 gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
          Length = 604

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V R  E++    V            P    +TGI
Sbjct: 51  TFVVVDLETTGGAPDGGGITEIGAVKV-RGGEELG---VLATLVNPGVPIPPFITVLTGI 106

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E +      +F +     ++  +N  +D  + +    R+ Y        
Sbjct: 107 TQAMLVPAPPIE-QVLPSFLEFVAD---AVLVAHNAPYDVGFLKAACARHGYRWP----- 157

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + R +              D   + KL  LA          H A  D  A
Sbjct: 158 -NPRVLDTAALARRV-----------LGRDEVPNRKLGTLASYFRTATRPTHRALDDAKA 205

Query: 184 TLALVWLI 191
           T+ ++  +
Sbjct: 206 TVDVLHGL 213


>gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis ATCC 29200]
 gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
           faecalis TUSoD Ef11]
 gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0102]
 gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis ATCC 29200]
 gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
           faecalis TUSoD Ef11]
 gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0102]
 gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0031]
 gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0312]
 gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1342]
 gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis OG1RF]
          Length = 929

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0645]
          Length = 929

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 1465

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/401 (11%), Positives = 97/401 (24%), Gaps = 30/401 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   IE  + F       +        +TGI
Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKM-FKGNIIEQFDEF---INPGHPLSAFTTELTGI 481

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +       +       F       I+  +N  FD  +    + R           
Sbjct: 482 TDNHLVGA-KPIQQVLEAFQAF---CQGTILVAHNASFDVGFMNANYDRYGL------AK 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +Y                    L  L     +   + H A  D  A
Sbjct: 532 ISQPVIDTLELARNLY-------------PEYKRHGLGPLTKRFQVSLEHHHMANYDAEA 578

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        +    L      +          +              
Sbjct: 579 TGRLLFIFLKEAREKHGITNLLQLNTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLVS 638

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
             + +Y + V     +   +  + L               L   +   +          +
Sbjct: 639 LSNVKYFEGVPRIPRTVLDQHREGLLLGTACSDGEVFDAVLTQGIDAAVDLAKYYDFIEI 698

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           MP    +         D     + +  L +          A  N  Y      +   +  
Sbjct: 699 MPPAIYQPLVVRELIKDQAGVEQIIRDLIEVGRRAEKPVLATGNVHYIEPEDAIYRDIIV 758

Query: 363 GFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFF 401
                               P  L   +   ++  L +  F
Sbjct: 759 RSLGQGALINRTIGRGEAAKPVPLPEAHFRTTNEMLDDFAF 799


>gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol]
          Length = 929

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218


>gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 315

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 162 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 216

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +        +  K + TS           +K    N   +L 
Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEAGNTRIMLN 270

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++   K         +   L+ L   ++     D     Y  
Sbjct: 271 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312


>gi|302338443|ref|YP_003803649.1| DNA polymerase III subunit epsilon [Spirochaeta smaragdinae DSM
           11293]
 gi|301635628|gb|ADK81055.1| DNA polymerase III, epsilon subunit [Spirochaeta smaragdinae DSM
           11293]
          Length = 210

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV +D+ET G D   DR  +   V   +  +  E+               P +  + GIT
Sbjct: 25  FVSFDFETTGLDSFRDRILEIGAVSWRQ-GKTKETFSSL---VRPGIPVPPASTAVHGIT 80

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               L       +    +  F       +   +N+ FD  +  +   R            
Sbjct: 81  DDDLLDAP----DEKGALVSFLRFIEGKVAVAHNLPFDYGFLESSVDRLGL------SLG 130

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R +Y              G  S+ L +L     +   +AH A +D    
Sbjct: 131 DTLFIDTLTLSRRVY-------------PGLPSYALGNLITFLNLFQEDAHRALSDASDC 177

Query: 185 LALVWLIREKKPKLFEYLY 203
             L +   ++  ++ +   
Sbjct: 178 GRLFFRCLDEDKQMLKMTI 196


>gi|269794889|ref|YP_003314344.1| exonuclease, DNA polymerase III subunit epsilon family
           [Sanguibacter keddieii DSM 10542]
 gi|269097074|gb|ACZ21510.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Sanguibacter keddieii DSM 10542]
          Length = 616

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V R  E I   +         +        +TGI
Sbjct: 61  TFVVVDLETTGGSSKDAGITEIGAVKV-RGGEVIGEFQSL---VNPGHPVPAFIARLTGI 116

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      +  F       ++  +N  FD  + +                
Sbjct: 117 TTLMVSSAPSIEL----VLPSFLEFARGTVLVAHNAPFDISFLKAAARSMDLAWP----- 167

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            GN   D + + R +              D A + KL  LA          H A +D  A
Sbjct: 168 -GNQVLDTVPLARRV-----------VTRDEAPNHKLGTLAALFRATITPDHRALSDARA 215

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 216 TVDVMHALFDRMAPLGITHLE 236


>gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0017]
          Length = 929

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2137]
          Length = 929

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           62]
          Length = 929

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|31747869|gb|AAN10194.1| DNA polymerase III epsilon subunit [Candidatus Fritschea bemisiae]
          Length = 249

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 70/245 (28%), Gaps = 33/245 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV +D E+ G D   DR  + A ++       I+S E        + L   E   I 
Sbjct: 6   KEIFVCFDCESTGLDPEKDRIIEIAAIKFSFN-AIIDSIEDL---INPETLIPQETTRIH 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            IT +   +   +       I  +       I+  + I FD         R        S
Sbjct: 62  HITDEMVQKSPKIN----EVIQSYLDFIGESIVVGHGIPFDLALLEAEAKRAGVP----S 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L + R                  + +  L+ L     I+ +NAH A +DV
Sbjct: 114 RLLNQRYLDTLRLAR--------------LYGESPTNSLESLRKHFNIQGINAHRAMSDV 159

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
              + +   + +    + E          LR +       PL    G          L  
Sbjct: 160 LVNIDVFKYLSQGFNTVEELFKKLEKPIALRAM-------PLGKHKGRSFREIPTEYLKW 212

Query: 242 PVAWH 246
               +
Sbjct: 213 ACHQN 217


>gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
          Length = 1449

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 27/204 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   ++  +   V++ +    I+                     IT IT
Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKI-KAGRIIDRYSQL---INPGISIPYHITEITSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++      ++ E   +  +F       ++  +N  FD  + +              + N
Sbjct: 478 NEQVANQPKID-EVIGKFVEFI---GDAVLVAHNAPFDMGFIKR---------DIKEYLN 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +    ++D ++      PD  +          + L DL  A G+     H A  D  AT
Sbjct: 525 IDLECSVIDTLQMARDLFPDFKK----------YGLGDLNKALGLALEKHHRAVDDSQAT 574

Query: 185 LALVWLIREKKPKLFEYLYDYRNK 208
             +  +  EK  +         NK
Sbjct: 575 ANMFIIFLEKYKEKGIEYLKDINK 598


>gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis HH22]
 gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis HH22]
          Length = 929

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218


>gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecalis V583]
 gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis TX0104]
 gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecalis V583]
 gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis TX0104]
 gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0309B]
 gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0309A]
          Length = 929

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218


>gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
 gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
          Length = 318

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCAAIEEEGKRKV----NKVMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +        +  K + TS           +K    N   +L 
Sbjct: 220 -DIKAFYPVMRLKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 273

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++   K         +   L+ L   ++     D     Y  
Sbjct: 274 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315


>gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 463

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 28/197 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   + I D ET G   + DR  + A V  D   + +ES E        + L       +
Sbjct: 1   MKKKYAIIDVETTGGKASRDRIIEIAVVIHDGN-QILESWESL---INPETLIPWNITIL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  Q          E +R+I +        I   +N RFD  +    F R        
Sbjct: 57  TGINDQMVANAPK-FYEVARKIVELTE---GAIFVAHNARFDYSFIGEEFKRLG------ 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            +     +   L + R                     + L  L+    I +   H A  D
Sbjct: 107 -YTYTRKQLCTLRLARQTLPGLYA-------------YGLDALSRHFNIHNQARHRAMGD 152

Query: 181 VYATLALVWLIREKKPK 197
           V AT+ ++  I + +  
Sbjct: 153 VQATIKVLEYILQHEDN 169


>gi|323489712|ref|ZP_08094939.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2]
 gi|323396843|gb|EGA89662.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2]
          Length = 920

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 71/212 (33%), Gaps = 28/212 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           T  +V+ D ET G   A  DR  Q A V      E  ++   F                +
Sbjct: 3   TQKYVVVDIETTGHSPAKGDRIIQLAMV-TIENGEITDTYTEF---INPGRTIPLFIQDL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT          E  +++ +++        I   +N  FD  + +    R+       
Sbjct: 59  TNITDADVAEAKAFEH-YAQTVYEKMQD---AIFVAHNTNFDLPFLQAELKRSGLP---- 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D ++++R +Y  +              SFKLQD+    GI   +AH A  D
Sbjct: 111 --KWQGLTMDTVELVRLMYPTAF-------------SFKLQDITSELGIPLESAHRADDD 155

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
             AT  L    +E    L      + +K   +
Sbjct: 156 AMATALLFLRAKEDLASLPYATLAFLHKRSFQ 187


>gi|291544892|emb|CBL18001.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
           18P13]
          Length = 1444

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 62/480 (12%), Positives = 129/480 (26%), Gaps = 57/480 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  +I+D ET G     DR  +   ++V +     +S   +      +    PE   +TG
Sbjct: 426 DTIIIFDVETTGLSAERDRLTEIGAIKV-KNMRVADSFHTY---VNPERPIPPEITDLTG 481

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           I               S+ + +FF+      ++  +N RFD  +      R         
Sbjct: 482 IHEGMVAEAPK----ASQALKEFFAFCGEDPVLVAHNARFDTSFIDAAAGRAGQ------ 531

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                         R  YA+    +   +        KL  +A    +   + H A  D 
Sbjct: 532 --------------RYAYAYIDSLVLCQAMLPDLAKHKLNVVAKHLKLGKFDHHRADNDA 577

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALI 240
                +   +  +     +  Y      +++K+   +  +    +        ++   LI
Sbjct: 578 MMLAKIYLELVGRLITEKKLEYLSELNTKVQKIDARKLKSFHQIILAKNQTGLKNLYRLI 637

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
           +       YK  ++  +            S   A  LF +  + +    + ++       
Sbjct: 638 SYGHIDCFYKKPLMPKSQLLKYHEGLLFGSACEAGELFRAMVDGRPYAEL-LELAKFYDY 696

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL--RDRFKAIYNKPYTSSSQDVDS 358
             + P+                       ++ +  +                        
Sbjct: 697 LEIQPLGNNAFMLRNGTAESEDDLKNWNRMICKIGDDLGLPVVATCDVHFMDPKDGKYRQ 756

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
            L  G                  +Q + L L  +D  L E    Y  +   + +  +   
Sbjct: 757 ILMAGNGFK------------DADQQAPLYLRTTDEMLEEFS--YLGQEKAYEVVVENTN 802

Query: 419 DWLEHRK------KMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVI 468
              +         K      IE  +  L  +    + E  GD   E +   L   L  +I
Sbjct: 803 RIADLIDFVRPIPKGTFTPNIEGAEEDLTRITNNRAREIYGDPLPEIVAKRLDRELSSII 862


>gi|325265145|ref|ZP_08131871.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5]
 gi|324029549|gb|EGB90838.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5]
          Length = 233

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 61/204 (29%), Gaps = 28/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   ++ +D ET G +   +   +   ++V R  +  E    F           P  + +
Sbjct: 1   MLKSYIAFDLETTGLNPEQNEIIEIGALKV-RDGKVQERFMEF---VRPTENISPVVMNL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +               I  F       I+  +N+ FD  + +        D    
Sbjct: 57  TGITNEMVADARSSRN----VIPDFLDFCGDDILIGHNVIFDYSFVKIGAMAEGLDF--- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                 +  D L + R ++                 S  L  L     IE+  AH A  D
Sbjct: 110 ----ERAGIDTLKIARKVH-------------KDMESKSLGCLCDYYHIENNAAHRAYHD 152

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  L   +          ++ 
Sbjct: 153 ALATAKLYQTLAHYFEAQEPKIFQ 176


>gi|320332653|ref|YP_004169364.1| DNA polymerase III subunit epsilon [Deinococcus maricopensis DSM
           21211]
 gi|319753942|gb|ADV65699.1| DNA polymerase III, epsilon subunit [Deinococcus maricopensis DSM
           21211]
          Length = 174

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 53/192 (27%), Gaps = 27/192 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D   +   +R+ R  E +E  + F      +         + GI 
Sbjct: 3   YVVFDLETTGLSPERDAIVEIGAIRI-RNGEVLED-DTFHTLVNPERDIPWYVSRVHGIR 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         +  +  F     T  +  +N  FD  + R    R   +        
Sbjct: 61  NAHVASAPR----ITEALPAFLQYAGTTPVVAHNAAFDTGFIRAAAARQGLEW------R 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                  L + R  +                 S KL  LA   G+       H A AD  
Sbjct: 111 PQREICTLQLSRRAF-------------PREKSHKLDALAQRLGLLQEARGLHSAHADAR 157

Query: 183 ATLALVWLIREK 194
            T      +   
Sbjct: 158 LTAHAFAHLLRH 169


>gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0012]
          Length = 929

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218


>gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
 gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
 gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0630]
          Length = 929

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYDFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNP 218


>gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0470]
 gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0470]
 gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2141]
          Length = 929

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218


>gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2134]
 gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus sp. 7L76]
 gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2134]
          Length = 929

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218


>gi|225163449|ref|ZP_03725765.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
 gi|224801949|gb|EEG20229.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
          Length = 197

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 20/192 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + VI+D ET G     +   Q A VR+       + T   +  P            +TGI
Sbjct: 2   NLVIFDLETTGFSPRWNDIIQIAAVRL-VDGRISDETFSTYVSPRRPV--PDHITELTGI 58

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           T           ++  R   +F        ++ +N  RFD  +       +         
Sbjct: 59  TDADVADAPET-SDALRAFARFVGDVGPTTLVAHNGHRFDMRFIAESCTLHGLP------ 111

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    +  +R I +       WP+         ++ L +  GI     HDA+ADV+
Sbjct: 112 ---------MRPIRFIDSIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARADVH 162

Query: 183 ATLALVWLIREK 194
                V  + + 
Sbjct: 163 LLANAVRRMIQN 174


>gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 315

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 100/345 (28%), Gaps = 44/345 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 162 AAVYQKCAAIEEEGNRKV----NKAVLDETAVYEAVKEMLVCNKRNVEWLRCMNVGSYLD 217

Query: 245 WHPRYKDSVIGCNLSGDM--RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
               Y    +              + D  ++   L              +K    N   +
Sbjct: 218 IKAFYPVMRVKVKGRKKYVLTEILEDDVKEICTSLK---------CEPALKSEVGNTRIM 268

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
           L  ++   K         +   L+ L   ++     D     Y  
Sbjct: 269 LNSLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312


>gi|225573157|ref|ZP_03781912.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039486|gb|EEG49732.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM
           10507]
          Length = 234

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 28/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V +D ET G D   +   +   ++V R  + +E    F                +
Sbjct: 1   MLKSYVAFDVETTGLDPEQNEIIEIGALKV-RNGKVVERFMKF---IRPTEEISQTITDL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +  +     E    + I +F       I+  +N+ FD  + +        D    
Sbjct: 57  TGITNEMVVNAQSRE----QVIPEFLDFCREDILIGHNVAFDYSFMKMGALAVGLDFVSQ 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + R ++                 S  L+ L     IE+  AH A  D
Sbjct: 113 G-------IDTLKIARKVH-------------GDLESKSLERLCAYYQIENKAAHRAYHD 152

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  L   +     +    ++ 
Sbjct: 153 ALATAKLYQTLAHYFEEKEPAVFQ 176


>gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
 gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
 gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0043]
          Length = 929

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218


>gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
          Length = 1421

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/400 (12%), Positives = 108/400 (27%), Gaps = 44/400 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G   A ++  +   V++    + ++           +     +   +T IT
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDN-KIVDEFNQL---INPEIPIPEKITELTSIT 457

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       ++A     + +F      C +  +N  FD  + +        +        
Sbjct: 458 NEMVKDMPKIDA----VLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPV------ 507

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L   RA              +    + KL  L     +   N H A  D  AT
Sbjct: 508 -RTYIDTLAFARA-------------LESHLKNHKLDTLTKKYNVNLFNHHRACDDARAT 553

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
             +   +     +         N+      +   ++ T  ++   + G       + A  
Sbjct: 554 GEVFICMVNNLEQRGFKFDININQMDSDWSISKRESHTATIYAKNLIGLKNLYKLVTASN 613

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH--LNKCP 301
             +   +  +    L+            +  + +              I   +  L   P
Sbjct: 614 LKYFSREGGIPKSELNKRREGLVIGSGNENGELIKAILSFESDEKIDEIISRYDFLEVQP 673

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            L       K          +   +   L  +   L       Y K +        + + 
Sbjct: 674 PLYYDGVKSKSMSFNLRSCEELTRKLYNLSLKHNKLL--VADSYAKYFEKEDYIFRNIIL 731

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
           +G    +             E+  TL    +D  + E  F
Sbjct: 732 EGQPRKIYG-----------EKFPTLFFRTTDEMMNEFVF 760


>gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
 gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
          Length = 315

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 162 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 216

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +        +  K + TS           +K    N   +L 
Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 270

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++   K         +   L+ L   ++     D     Y  
Sbjct: 271 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312


>gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
 gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
          Length = 1513

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/387 (12%), Positives = 110/387 (28%), Gaps = 40/387 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G    +DR  +   V+V    E ++    F      +         +T 
Sbjct: 471 DTYVVFDLETTGFSAEVDRIIEIGAVKV-CNGEIVDRFSTF---VNPEIPIPFRIETLTH 526

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  Q  +    +E      + +F       ++  +N  FD  +  N   +   +      
Sbjct: 527 INDQMVMNAPKIE----EILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTT-- 580

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   ++D +       P+             +KL  L     +   + H A     
Sbjct: 581 --------IIDTVLLAQFLMPNLHN----------YKLDTLTKHLNVVLESHHRAV---D 619

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF-----GASRSNT 237
              A   +  +    L++      +K      +D   +  L     +          +  
Sbjct: 620 DAAATADIFVKMIKMLYDRDIPDVDKLNEEGKMDENAIKKLHQYHCIILASNEMGRINLY 679

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEV 295
            L++        +   I  +L    R    + S   A  LF S  +   +  +   +   
Sbjct: 680 RLVSASHLQYFNRFPKIPKSLVNQYREGLIIGSACEAGELFRSLVNGRSEAEIARIVNFY 739

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
              +   +    +  ++       +      N  ++           A  +  + +   +
Sbjct: 740 DYLEIQPIGNNRFMIEKEDCYVQNEEDLRNLNRRIVELGDKFGKPVVATCDVHFLNPEDE 799

Query: 356 VDSQLYD--GFFADVDRQIMDRILRTA 380
           V  ++      F D D Q    +  T 
Sbjct: 800 VYRRIIMAGKGFDDADNQAPLYLHTTE 826


>gi|94985918|ref|YP_605282.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM
           11300]
 gi|94556199|gb|ABF46113.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM
           11300]
          Length = 180

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 56/193 (29%), Gaps = 33/193 (17%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPAD---DYLPDPE-A 57
           + V++D ET G     D   +   +RV      +  E  E    +P +   + +P P  A
Sbjct: 2   NVVVFDLETTGLSPERDAIVEIGALRV-VDGRVVESERFETL-VRPQNAAGEVVPIPWRA 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             + GI+            E  + + +F        +  +NI FD  + R    R     
Sbjct: 60  QRVHGISDAMVQDAP----ELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGL-- 113

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAH 175
                            + A  A                +  L  LA   G+       H
Sbjct: 114 -----------------VWAPPAEYCTVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRH 156

Query: 176 DAKADVYATLALV 188
            +  DV  T    
Sbjct: 157 RSLGDVQVTAEAF 169


>gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
 gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
          Length = 470

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 51/191 (26%), Gaps = 30/191 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
            F ++D ET G     D   Q   VRV    + +                  P +  + G
Sbjct: 277 SFTVFDTETTGLMPNKDEIVQIGAVRV-VNGKIVPGEVIDQLV--DPGRPIPPASTKVHG 333

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          +    + QF +     +I  +N  FD  +       +  +      
Sbjct: 334 ITDEMVKGAP----DAVTSVQQFHTFAKDSVIVAHNAPFDMAFLHRYGRESGLEW----- 384

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180
                   ++D +                        L  L    G  I     H A  D
Sbjct: 385 -----DHPIMDTVLLSAVVYGTTEI----------HTLDALCDRLGVTIPVELRHTALGD 429

Query: 181 VYATLALVWLI 191
             AT  ++  +
Sbjct: 430 AQATAEVLCHL 440


>gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC
           13950]
          Length = 323

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 63/207 (30%), Gaps = 28/207 (13%)

Query: 4   HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            FV+ D ET G           D   +   V+V R    +                 P+ 
Sbjct: 16  TFVVVDLETTGGRTKSAAGTEPDAITEIGAVKV-RGGVVLGEFATL---IDPQRSIPPQV 71

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V +TGIT         ++A       +F  +    ++  +N  FD  + R    R     
Sbjct: 72  VRLTGITTAMVSDAPTIDA-VLPMFLEFARLDQGAVLVAHNAGFDIGFLRAAAQRCDI-- 128

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R  +L  +R                + A S +L  LA    +     H A
Sbjct: 129 -------AWPRPQVLCTVRLARRVL--------SREEAPSVRLASLARLFAVTTQPTHRA 173

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
             D  AT+ ++  + E+      + Y 
Sbjct: 174 LDDARATVDVLHALIERVGNQGVHTYA 200


>gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter
           sphaeroides KD131]
          Length = 695

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 56/202 (27%), Gaps = 29/202 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G   + D   Q A VR+          EV            P +  + GI
Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRV--EAEVLDTLVNPHRSIPPSSTEVHGI 552

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +  E  RR H+F       ++  +N  FD  + R                
Sbjct: 553 TDAMVAEAPDI-VEVGRRFHKF---AEGAVLVAHNAPFDMEFLRRAEPLIGR-------- 600

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181
                       R         +        +    L  L    G  I     H A  D 
Sbjct: 601 ------------RFDNPILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDT 648

Query: 182 YATLALV-WLIREKKPKLFEYL 202
            AT      L+   + + FE  
Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670


>gi|116696325|ref|YP_841901.1| putative exonuclease [Ralstonia eutropha H16]
 gi|113530824|emb|CAJ97171.1| putative exonuclease [Ralstonia eutropha H16]
          Length = 220

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 26/182 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +   FV++D ET G D       +   +RV+R     ++ +V             +   +
Sbjct: 48  LPERFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVL---VKPSRKVPKKITEL 104

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP+    +GV      +   +F    N  ++ +N                 +D    
Sbjct: 105 TGITPEMIEAEGVSLESAVQDFAKF--AGNLRLVSFNAE---------------FDMAFI 147

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           S   G S     + +    A       WP       S++L ++A    ++  + H A  D
Sbjct: 148 SKAAGKSSITFANPV--SCALKMSRRAWP----DRKSYRLAEIAKDGNLDTSDMHRALGD 201

Query: 181 VY 182
             
Sbjct: 202 CQ 203


>gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae]
          Length = 1459

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 140/479 (29%), Gaps = 48/479 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V +D ET G         +F  V +++  +       FF KP            +TGI
Sbjct: 424 SYVSFDIETTGLSPKFHEIIEFGAVDINQDLKV-GKVTQFFIKPQ--AKIGAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T Q    +G+   +  +RI+      +  +   +N +FD  + +  F  N       +  
Sbjct: 481 TQQMLDSEGLSIKDGLQRIYDCL---DGKVAIAHNAKFDFNFLKEQFRLNNVPFPNVT-- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
                 D L   R  +                   KL+D+A   G+ +    AH    D 
Sbjct: 536 ----VIDTLIASRIGF-------------PNYKRHKLEDVASRLGVVYDPNVAHRGDYDA 578

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
                +   I  +      + ++         L    +   +  ++      +    LI 
Sbjct: 579 KVLANVWVNIISELNSKNIFTFEDLGNFTSNDLYAKMHGYEVSTIALNNKGLKKQFELIT 638

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-----PVPIKEVH 296
                      +           F +LD   +     T    L            IKE+ 
Sbjct: 639 DCLTKKFINGPITF------KEDFVNLDRSDILVGSGTLKGLLIDKYFYSSHDDFIKELK 692

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLL--RQQTNLRDRFKAIYNKPYTSSSQ 354
                 + P   C +   +   I  K+  + L+ +    + + +        K      +
Sbjct: 693 HYDFIEI-PAPQCFEHWIKYGFITTKQLYDGLSEIISEAKKHSKICIATADVKYLDPWDK 751

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFF---RYRARN-- 407
           ++   L         R  +    +    +L   N  F  +D  L +  F   +  A    
Sbjct: 752 EIFMSLVYAKGIKNARHYLFDYKKAEEGKLVIPNQRFLTTDEMLEQFAFLNDKKLAEEIV 811

Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
             +T       + +E  K  L     ++ K KL  L  +    +  E L   + + +  
Sbjct: 812 IDNTQKIANMAENIEVIKNGLFTPEFDDSKKKLHDLVYKNAHAKYGENLPELIQKRIDS 870


>gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
 gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
          Length = 318

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 103/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +        +  K + TS           +K    N   +L 
Sbjct: 220 -DIKAFYPVMRVKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 273

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++             +   L+ L   ++     D     Y  
Sbjct: 274 SLEDVM-RLESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315


>gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
          Length = 486

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 28/194 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F   D ET G + A DR  +   +R  R  E +   +        +    P     TGI
Sbjct: 12  TFAFLDIETTGGNSARDRITEIG-IRFWRAGEVVGEWQTL---LNPETRISPFIENFTGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      + E E +  +          +   +N RFD  + ++ F R           
Sbjct: 68  SNEMVADAPLFE-EVADELEAQLK---GKVFVAHNARFDYGFIKSEFRRLGR-------- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  +L  ++                       +  L   +G+  V  H A  DV A
Sbjct: 116 --LFSAKVLCTVKLSRRLY----------PEFRRHNMDALIARHGLARVQRHRAMGDVSA 163

Query: 184 TLALVWLIREKKPK 197
            LA     R +K  
Sbjct: 164 MLAFFEHARSEKGD 177


>gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
 gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
          Length = 233

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G D  +DR  +   V ++ Q+     +   F  P D     P+A+ + GIT 
Sbjct: 4   IVFDTETTGLDNKVDRIIEIGCVELENQF-PTGRSLHLFINP-DGRAVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q      V  A+ +  I  FF   +      +N  FD  +    F R           + 
Sbjct: 62  QFLADKPV-FADLADEIAAFF---DGAHYVAHNANFDMGFLNAEFDRIGLPPV-----DP 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 113 GLVIDTLALARRRHPMGPN--------------SLDALCRRYGIDNAHRTKHGALLDAEL 158

Query: 184 TLALVWLIR 192
              +   +R
Sbjct: 159 LTDVYIEMR 167


>gi|227495992|ref|ZP_03926303.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM
           15434]
 gi|226834480|gb|EEH66863.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM
           15434]
          Length = 547

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 58/202 (28%), Gaps = 23/202 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   VRV R  +  +                 +   +TGI
Sbjct: 30  TFVVVDLETTGAGPGSHTITEIGAVRV-RGGQVEDELSTL---VNPGRAIPAQITVLTGI 85

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           T            E   R  Q+  +     ++  +N RFD  + R        D +    
Sbjct: 86  TNAMVAGAP-PVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHE--- 141

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + R  +                 + +L  LA   G      H A  D  
Sbjct: 142 ---PRVLDTLALARRAWT-----------RSEVPNHRLATLASFVGSPTRPTHRALDDAR 187

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT+ ++    E    L     +
Sbjct: 188 ATVDVLHAALEVLGPLGVTHLE 209


>gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
 gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
          Length = 462

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 28/195 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V+ D ET G     DR  +   +R      +++  +        +    P    I
Sbjct: 1   MLPAYVLLDLETTGATPVTDRITEIGLIRY-ENGIEVKRWQTL---VNPEMHISPFITSI 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+        +    F    ++  S  +  ++  +N+RFD  + +N F R        
Sbjct: 57  TGISNAMVKDAPL----FKDVANELLSHLHGAVLCAHNVRFDYGFLKNEFRRLDI----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R ++L  ++      P+            S  L  +   +GI     H A  D
Sbjct: 108 -----TLRQNVLCTVKLSRRLYPEY----------KSHGLDAIIARHGIACAARHRAMGD 152

Query: 181 VYATLALVWLIREKK 195
           V      + +   + 
Sbjct: 153 VEVMAEFLHIAEAEH 167


>gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
 gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
          Length = 1451

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 81/239 (33%), Gaps = 37/239 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+YD ET G   + D   +F  V ++R   +I+ T+  F KP      +      T IT
Sbjct: 399 YVVYDLETTGLSCSFDHIIEFGAVVIERG--EIKETKQLFVKPP--VPINAFISEKTNIT 454

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   +     AE ++ +  F       ++  +N  FD  +      R            
Sbjct: 455 NEDVAQA-KPFAEVAQELVDFI---GDKVLVAHNATFDYNFLNEELKRIGMAPL------ 504

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
            N   D LD+ RA++                 S++L ++A       +   AH A  D  
Sbjct: 505 TNPVVDTLDLARALH-------------SDRRSYRLGNIARHYRITYDEEVAHRADYDAD 551

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
              ++  L+ ++           R    +  L ++Q+    V V        +      
Sbjct: 552 VLASVFMLMIKEC--------KDRGAQTVADLQNLQDKKAFVKVMKRHVNVIAKNQAGL 602


>gi|282890058|ref|ZP_06298591.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500064|gb|EFB42350.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 231

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 68/225 (30%), Gaps = 28/225 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + YD ET G     D   + A    D    +      F           PEA  I  IT 
Sbjct: 4   LYYDTETTGIKADRDYVIELA--VYDPVGNR-----TFERLINPGVPIPPEATAIHHITD 56

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          E      +F S  +  +I +NN +FD ++ RN F R+  +   W +   
Sbjct: 57  EMVANAP-SFGEIIEEFKEFCS-GDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKF--- 111

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D L   R                +      LQ L    GI   NAH A  DV    
Sbjct: 112 ---LDTLKWARRYR-------------NDLPRHTLQFLRGIYGIAENNAHRALDDVIVLH 155

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
            +   + +       Y    + K+            PL  V   +
Sbjct: 156 QVFSAMLDDLSIAEAYALMNQPKDIQHMPFGKHQGMPLKQVPASY 200


>gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 324

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 102/343 (29%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 19  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 74

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 75  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 125 TNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNALDDCITC 170

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 171 AAVYQKCAAIEEEGNRKV----NKAVLDETAVYEAVKEMLARNKRNVEWLRCMNVGSYL- 225

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +           K + TS           +     N   +L 
Sbjct: 226 -DIKAFYPVMRLKVKGRKKYVLTEILEDDVKEICTSLT-----CEPALNSEAGNTRIMLN 279

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++   K         +   L+ L   ++     D     Y  
Sbjct: 280 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 321


>gi|109898663|ref|YP_661918.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700944|gb|ABG40864.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
          Length = 769

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G      R  +   V+V    + ++S          +         +TGI+
Sbjct: 604 YVVVDVETTGGCKPGHRITEIGAVKV-IDSKVVDSWSSL---INPERRVPHFITRLTGIS 659

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   E    +  F      CI   +N+ FD  + +  + R            
Sbjct: 660 NDMVEDAPL-FCEVIDDLEAFMQD---CIFVAHNVNFDYGFFKLEYGRLER--------- 706

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R +  +            G+ S+ L  L+   G+   N H A  D  A 
Sbjct: 707 -AFSMPKLCTVREMRKYY----------PGSPSYSLGKLSKEYGLSLDNHHRALCDAQAA 755

Query: 185 LALVWLIREKKPK 197
             L+ ++ EKK  
Sbjct: 756 AELLIMVNEKKHT 768


>gi|291484662|dbj|BAI85737.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. natto BEST195]
          Length = 931

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 87/279 (31%), Gaps = 30/279 (10%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              FV+ D ET G      D+  Q A V +    +  E    +      +         +
Sbjct: 3   KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNKSIPAFIEQL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ Q    +       +  + Q     +      +NI FD  + +   ++  +     
Sbjct: 59  TGISNQMVENE-QPFEAVAEEVFQLL---DGAYFVAHNIHFDLGFVKYELHKAGF----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +++ R ++                  +KL +L+    + H   H A +D
Sbjct: 110 -QLPDCEVLDTVELSRIVFPGFEG-------------YKLTELSEELQLRHDQPHRADSD 155

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
              T  +   I EK  +L         +     + D+ ++  +             T   
Sbjct: 156 AEVTGLIFLEILEKLRQLPYPTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRFS 215

Query: 241 APVAWHPRYKDSVI--GCNLSGDMRVFQDLDSVQLAKRL 277
           +     P   D  I    N S ++  ++  +   L++ +
Sbjct: 216 SFSVREPEAIDVRINEDENFSFEIESWEAGNEKALSELM 254


>gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 1454

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 66/203 (32%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   +   +   V++ +    ++                     IT IT
Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 482

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +  ++ E   +   F       ++  +N  FD  + +    +     Y+ S   
Sbjct: 483 DEQVANEPKID-EVIGKFVDFI---GDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 535

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D ++      PD  +          + L DL    G+     H A  D  AT
Sbjct: 536 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 579

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             +  +  +K  +         N
Sbjct: 580 ANMFIIFLDKYKEKGLEYMKDIN 602


>gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1454

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 66/203 (32%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   +   +   V++ +    ++                     IT IT
Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 482

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +  ++ E   +   F       ++  +N  FD  + +    +     Y+ S   
Sbjct: 483 DEQVANEPKID-EVIGKFVDFI---GDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 535

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D ++      PD  +          + L DL    G+     H A  D  AT
Sbjct: 536 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 579

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             +  +  +K  +         N
Sbjct: 580 ANMFIIFLDKYKEKGLEYMKDIN 602


>gi|240142703|ref|YP_002967216.1| Protein with DNA-directed DNA polymerase-like domain
           [Methylobacterium extorquens AM1]
 gi|240012650|gb|ACS43875.1| Protein with DNA-directed DNA polymerase-like domain
           [Methylobacterium extorquens AM1]
          Length = 754

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 63/194 (32%), Gaps = 30/194 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             FV+ D+ET G      DR  +   V +          +         +        IT
Sbjct: 542 ERFVVIDFETTGLSPNNGDRVIEVGAVEI-VDGRIGRRFQSLA---NPGFPVSARITAIT 597

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+    +      AE  R +  F        +  +N  FD  + +    R         
Sbjct: 598 GISNAMLVDAP-PLAEVIREVSAFIE---GATLVAHNAGFDRRFLQAEMERLGL------ 647

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                  WD  +++  +               G  S+KL  LA   G+   +A H A AD
Sbjct: 648 -------WDDREMLCTMRLGK-------RAYPGLGSYKLAFLAEHAGVALPDAMHRALAD 693

Query: 181 VYATLALVWLIREK 194
             AT  L  ++RE+
Sbjct: 694 AMATAELFLVMRER 707


>gi|282600891|ref|ZP_06257782.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
           15176]
 gi|282571272|gb|EFB76807.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
           15176]
          Length = 1347

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/474 (13%), Positives = 133/474 (28%), Gaps = 39/474 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++  FV++D ET G D  ++   +   V V    +  E  + F            + V +
Sbjct: 317 LSGSFVVFDTETTGLDSNVEALTEIGAVYV-ENGKINEE-KKFCTFVNPGKPIPQKVVEL 374

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI           E E  R   +F       ++ +N   FD  + R    +        
Sbjct: 375 TGINDAMVADAPTPE-EAIRAFKEFCGDH--VLVAHNAHSFDMLFIRKAGEKAGISFDEN 431

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           ++         +D +    A             G  ++KL  +     I   N H A  D
Sbjct: 432 TY---------IDTLPMGQALF----------PGLRNYKLDTINKHLEIPPFNHHRAVDD 472

Query: 181 VYATLALVWLI-REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             A   +  ++  + + K    +          K +  +    L+ +       ++   +
Sbjct: 473 AMALARIFEVMLNDLQEKDIPTVEAINTGLGGNKEVLKKKYYHLIILVQNQVGLKNLYRI 532

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
           ++       +K   +  +L    R    L     A  L+             ++      
Sbjct: 533 VSAAHTQYFFKKPRVPRSLLNKYREGLLLSPACEAGELY-RAIVAGQPYEQLLRIADYYD 591

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
              + P+   +           +     N T+++   +L     A  +  +      +  
Sbjct: 592 YLEVQPLGNNEFMVRNGQVDSIEAIKNFNRTVIKLGEDLHKPVVATGDSHFQEPEDWIYR 651

Query: 359 Q-LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
             L  G               T  E L   +    D+      F     N P+ ++    
Sbjct: 652 AVLQAGNGFKDADNQAPLYYHTTTEMLEDFSYLPQDK-----AFEIVVTN-PNKIAATID 705

Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQS----LSGEYKGDEGKEGLINALYEYLQWV 467
            +      K      I   + +L+      +    G    + L   L + L  +
Sbjct: 706 NNLRA-IPKGTYPPSIPGAEQELRDDTWKHAARDYGTPLPDVLQKRLKKELDSI 758


>gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           R712]
 gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           S613]
 gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           DAPTO 512]
 gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis DAPTO 516]
 gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           R712]
 gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           S613]
 gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           DAPTO 512]
 gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis DAPTO 516]
          Length = 929

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 81/238 (34%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V ++ + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QEGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218


>gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
 gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
          Length = 315

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 99/345 (28%), Gaps = 44/345 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 162 AAVYQKCAAIEEEGNRKV----NKAVLDETAVYEAVKEMLVCNKRNVEWLRCMNVGSYLD 217

Query: 245 WHPRYKDSVIGCNLSGDM--RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
               Y    +              + D  ++   L              +K    N   +
Sbjct: 218 IKAFYPVMRVKVKGRKKYVLTEILEDDVKEICTSLK---------CEPALKSEVGNTRIM 268

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
           L  ++   K         +   L+     ++     D     Y  
Sbjct: 269 LNSLEDVMKL-ESYILEQYDFVLQAFHDYKENEMNADEKLKEYLN 312


>gi|16079297|ref|NP_390121.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310156|ref|ZP_03592003.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314478|ref|ZP_03596283.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221319400|ref|ZP_03600694.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323676|ref|ZP_03604970.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. SMY]
 gi|1706437|sp|P54394|DING_BACSU RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|1146243|gb|AAB38451.1| 22.4% identity with Escherichia coli DNA-damage inducible protein
           ...; putative [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2634658|emb|CAB14156.1| damage inducible ATP-dependent helicase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 931

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 87/279 (31%), Gaps = 30/279 (10%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              FV+ D ET G      D+  Q A V +    +  E    +      +         +
Sbjct: 3   KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNKSIPAFIEQL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ Q    +       +  + Q     +      +NI FD  + +   ++  +     
Sbjct: 59  TGISNQMVENE-QPFEAVAEEVFQLL---DGAYFVAHNIHFDLGFVKYELHKAGF----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +++ R ++                  +KL +L+    + H   H A +D
Sbjct: 110 -QLPDCEVLDTVELSRIVFPGFEG-------------YKLTELSEELQLRHDQPHRADSD 155

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
              T  +   I EK  +L         +     + D+ ++  +             T   
Sbjct: 156 AEVTGLIFLEILEKLRQLPYPTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRFS 215

Query: 241 APVAWHPRYKDSVI--GCNLSGDMRVFQDLDSVQLAKRL 277
           +     P   D  I    N S ++  ++  +   L++ +
Sbjct: 216 SFSVREPEAIDVRINEDENFSFEIESWEAGNEKALSELM 254


>gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 288

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 28/195 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N FV  D ET G +   D+  + A V+  +  + I+           +         I  
Sbjct: 113 NEFVAIDLETTGLNPINDKIIEVAAVKF-KDGQIIDRFTTL---INPEIHIPSGITRINH 168

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +      V  AE    +  F       I+  +N  FD  + ++      +D      
Sbjct: 169 ITDEMVKDAPV-LAEVMPCLVNFIEDS---ILVMHNASFDLKFLKHHAMNFGHDIN---- 220

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              NS  D L   R I++   +             +KL  +A   GI   + H A  D  
Sbjct: 221 ---NSYIDTLPTCRNIFSGLEN-------------YKLPTIASHLGICGDSFHRACNDAE 264

Query: 183 ATLALVWLIREKKPK 197
               ++    E    
Sbjct: 265 ICGQVLIKCIETAKD 279


>gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 318

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 103/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCASIEEEGKRKV----NKVMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +        +  K + TS           +K    N   +L 
Sbjct: 220 -DIKAFYPVMRVKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 273

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++             +   L+ L   ++     D     Y  
Sbjct: 274 SLEDVM-RLESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315


>gi|52080748|ref|YP_079539.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus licheniformis ATCC 14580]
 gi|52786119|ref|YP_091948.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus licheniformis ATCC 14580]
 gi|319645294|ref|ZP_07999527.1| DinG protein [Bacillus sp. BT1B_CT2]
 gi|52003959|gb|AAU23901.1| ATP-dependent helicase [Bacillus licheniformis ATCC 14580]
 gi|52348621|gb|AAU41255.1| DinG [Bacillus licheniformis ATCC 14580]
 gi|317393103|gb|EFV73897.1| DinG protein [Bacillus sp. BT1B_CT2]
          Length = 930

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 30/206 (14%)

Query: 2   TNH--FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            N+  +V+ D ET G      DR  Q A V +    +  E    +      +        
Sbjct: 1   MNNQRYVVIDVETTGNSPKKGDRIIQIAAVVI-ENGQITERFSKY---VNPNQPIPAFIE 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI+ +    +    +  +  I +     ++C I +N   FD  + ++      +   
Sbjct: 57  QLTGISNEMVENE-EPFSAIAEDIFELL--HDSCFIAHNI-HFDLAFVKHELQLAGFGEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                   S  D +++ R ++                  +KL +L+    I H N H A 
Sbjct: 113 E------CSVLDTVELSRIVFPGFDG-------------YKLTELSEELQIRHENPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D   T  +   + ++  +L   +  
Sbjct: 154 SDAEVTALIFLHMMDRLKRLPIPVLK 179


>gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 473

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 28/192 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V+ D ET G    +DR  + A +R     +++   +        +    P    +
Sbjct: 1   MLPAYVLLDLETTGATPLVDRITEIALIRF-ENGQEVSRWQTL---VNPETAIPPFIQRL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI             E +  +          ++  +N+RFD  + +N F R   D    
Sbjct: 57  TGIDDGMVATAPH-FKEVAGELLDHLE---GAVLCAHNVRFDHGFLKNEFKRIGID---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R  +L  ++                    S  L  +   + ++    H A  D
Sbjct: 109 ------LRQKVLCTVKLSRKLY----------PQHRSHSLDSIIERHSLQCGARHRAMGD 152

Query: 181 VYATLALVWLIR 192
           V A +  +    
Sbjct: 153 VVALVDFLRAAE 164


>gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
           13941]
 gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 944

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 32/191 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V  D ET G +  +D   + A V+  R  E IE+ +    +P      +  +  +
Sbjct: 1   MDQIYVAIDVETTGLEAGVDEIIEIAAVKF-RTGEVIETFDTL-VQPRHSLPLN--SSRL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +         +E + R   F        +  +N+RFD    +    R        
Sbjct: 57  TGITAEMLAGAPR-FSEVAPRFAAFLKN---YPLVGHNVRFDINMLQAQGMRL------- 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +D  ++                      +++L  LA   GI H  AH A +D
Sbjct: 106 ----PQPAFDTFELA-------------TLLMPRTPAYRLSALAETLGIVHDEAHRALSD 148

Query: 181 VYATLALVWLI 191
              T  +   +
Sbjct: 149 ADVTRQVFLHL 159


>gi|321311709|ref|YP_004203996.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis BSn5]
 gi|320017983|gb|ADV92969.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis BSn5]
          Length = 931

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 30/279 (10%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              FV+ D ET G      D+  Q A V +    +  E    +      +         +
Sbjct: 3   KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNKSIPAFIEQL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ Q    +       +  + Q     +      +NI FD  + +   ++  +     
Sbjct: 59  TGISNQMVENE-QPFEAVAEEVFQLL---DGAYFVAHNIHFDLGFVKYELHKAGF----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +++ R ++                  +KL +L+    + H   H A +D
Sbjct: 110 -QLPDCEVLDTVELSRIVFPGFEG-------------YKLTELSEELQLRHDQPHRADSD 155

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
              T  +   I EK  +L         +     + D+ ++  +             T   
Sbjct: 156 AEVTGLIFLEILEKLRQLPYPTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRFS 215

Query: 241 APVAWHPRYKDSVI--GCNLSGDMRVFQDLDSVQLAKRL 277
           +     P   D+ I    N S ++  ++  +   L++ +
Sbjct: 216 SFSVREPEAIDARINEDENFSFEIESWEAGNEKALSELM 254


>gi|254506300|ref|ZP_05118443.1| exonuclease I [Vibrio parahaemolyticus 16]
 gi|219550780|gb|EED27762.1| exonuclease I [Vibrio parahaemolyticus 16]
          Length = 96

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 1/97 (1%)

Query: 373 MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR 432
           MD I +T P  L+ L++ F+D R+  L FRYRARNFP TL E E+Q W  H +     SR
Sbjct: 1   MDIIRQTDPNNLAALDISFNDDRIAPLLFRYRARNFPATLDESEQQRWANHCRDYF-ESR 59

Query: 433 IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           IE+Y   L++L  E++ DE K  ++ ++Y+Y+Q ++ 
Sbjct: 60  IEDYMLNLENLVHEHESDEKKLAILKSVYQYVQKLVS 96


>gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4244]
          Length = 929

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 81/238 (34%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V ++ + I +          + +   +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QEGKIIANFAT---DVNPNQVVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218


>gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264]
 gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis
           BMB171]
 gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           B4264]
 gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis
           BMB171]
          Length = 315

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 103/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 162 AAVYQKCVAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 216

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +        +  K + TS           +K    N   +L 
Sbjct: 217 -DIKAFYPVMRVKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 270

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++             +   L+ L   ++     D     Y  
Sbjct: 271 SLEDVM-RLESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312


>gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
 gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
          Length = 318

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 105/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +  +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HANVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNKVIDTVFLAKKY-------------MKQAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +++  + +  ++  +           + + + 
Sbjct: 165 AAVYQKCAAIEEEGQRKV----NKVSLDEIVVYEAVKEMLARNKRNVEWLRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +        +  K + TS           +K    N   +L 
Sbjct: 220 -DIKAFYPVMRVKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 273

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++   K         +   L+ L   ++     D     Y  
Sbjct: 274 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315


>gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
 gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
          Length = 1449

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   +   +   V++ +    ++                     IT IT
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +  ++ E   +   F       ++  +N  FD  + +    +     Y+ S   
Sbjct: 478 DEQVANEPKID-EVIGKFVDFV---GDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 530

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D ++      PD  +          + L DL    G+     H A  D  AT
Sbjct: 531 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 574

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             +  +  EK  +         N
Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597


>gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 470

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 28/192 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V+ D ET G    +DR  + A +R     +++   +        +    P    +
Sbjct: 1   MLPAYVLLDLETTGATPLVDRITEIALIRF-ENGQEVSRWQTL---VNPETAIPPFIQRL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI             E +  +          ++  +N+RFD  + +N F R   D    
Sbjct: 57  TGIDDGMVATAPR-FREVAGELLNHLE---GAVLCAHNVRFDHGFLKNEFKRIGID---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R  +L  ++                    S  L  +   + ++    H A  D
Sbjct: 109 ------LRQKVLCTVKLSRKLY----------PQHRSHSLDSIIERHSLQCGARHRAMGD 152

Query: 181 VYATLALVWLIR 192
           V A +  +    
Sbjct: 153 VVALVDFLRAAE 164


>gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
 gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
          Length = 318

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 104/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPSRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++      +         
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGFPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + K    +    NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCTSIEEKGKRKV----NKAVLDETAVYEAVKEILVRNKRNVEWLRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +           K + TS      +    +K    N   +L 
Sbjct: 220 -DIKAFYPVMRLKVKGRKKYVLTEIVEDDVKEICTSL-----ICEPALKSEVGNTRVMLN 273

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            +    K         +   L+ L   R+     D     Y  
Sbjct: 274 SLADVLKL-ESYILEQYDFVLQALDTYRENETNADEKLKEYLN 315


>gi|218134802|ref|ZP_03463606.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990187|gb|EEC56198.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC
           43243]
          Length = 237

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 72/245 (29%), Gaps = 35/245 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + +V  D ET G + A DR  +    +V      +     F           P    +
Sbjct: 1   MIDTYVAIDLETTGTNPAEDRIIEVGAAKV-ECGRVVSIFSTF---VNPQISISPRITSL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +      V     +  I    +      I  +N+ FD  + +     +  +  + 
Sbjct: 57  TGITDEDVAGAPV----IADIIADMIAYTKDVPILGHNVIFDYSFIKKAAANSKLEYAKE 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + R                       L  L     I+   +H A  D
Sbjct: 113 G-------IDTLKIAR-------------RILPDVPHKNLPALCEHFKIDPGKSHRALDD 152

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN--MTPLVHVSGMFGASRSNTA 238
             +   L + +    P+      +  NK  +      ++  +TP         A   N A
Sbjct: 153 AISASKLYYALYAVNPED-----EMFNKAMVLNYSVKKDSPITPAQKKYLTALAQYHNVA 207

Query: 239 LIAPV 243
           +  P+
Sbjct: 208 VTVPI 212


>gi|325282490|ref|YP_004255031.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
 gi|324314299|gb|ADY25414.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
          Length = 185

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 29/192 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA----DDYLPDPEAVFIT 61
           V++D ET G     D   +   +R+       E       +P     +       A  I 
Sbjct: 12  VVFDLETTGLSPERDGIVEIGALRIRDGRVVTEDPYQTLVRPQNSLGESVTIPWRAERIH 71

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +  +         ++ + +F        +  +NI FD  + R              
Sbjct: 72  GISNEMVVAAPS----IAQVLPEFLEWAGDAPLVAHNIGFDSGFMRAAARHCGLRW---- 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                     + + R  +                    L  LA   G+       H +  
Sbjct: 124 --APQREICTVQLSRRAF-------------PRERRHNLDSLAGRLGLSFSPQGRHRSLG 168

Query: 180 DVYATLALVWLI 191
           DV  T A    +
Sbjct: 169 DVEVTAAAYLRL 180


>gi|284030730|ref|YP_003380661.1| DNA polymerase III subunit epsilon [Kribbella flavida DSM 17836]
 gi|283810023|gb|ADB31862.1| DNA polymerase III, epsilon subunit [Kribbella flavida DSM 17836]
          Length = 602

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G         +   V+V    E +   +             P    +TGI
Sbjct: 38  TFCVVDLETTGGAPGDSGITEIGAVKVRA-GELVGEFQSL---VNPAEPIPPFIAVLTGI 93

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                 +  F      C++  +N  FD  + ++    + YD       
Sbjct: 94  TDLMVASSPR----IGSVLPAFLEFARGCVLVAHNAPFDVGFLKHDSQVHGYDW------ 143

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + ++D                   D   + KL  LA          H A +D  A
Sbjct: 144 ---PDFPVVDTALLARRVL--------TPDEVPNCKLGTLAKLFRATTTPNHRALSDARA 192

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   L     +
Sbjct: 193 TVDVLHGLFERVGSLGVQTLE 213


>gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
 gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
          Length = 318

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 92/276 (33%), Gaps = 36/276 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPSRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++      +         
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGFPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV- 243
            A+       + K    +    NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCTSIEEKGKRKV----NKAVLDETAVYEAVKEILVRNKRNVEWLRCMNVGSYLD 220

Query: 244 --AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL 277
             A++P  +  V G        + +D D  ++   L
Sbjct: 221 IKAFYPVMRLKVKGRKKYVLTEIVED-DVKEICTSL 255


>gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234]
 gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234]
          Length = 232

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 60/188 (31%), Gaps = 27/188 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +  GV ++ Q+     T   +  P  D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLDSREDRVIEIGGVELENQF-PTGRTIHIYINP-GDRKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                     A+    I  FF          +N  FD  +    F R             
Sbjct: 62  DFLKDKP-SFADVVEEIVDFF---GDARWVAHNATFDIGFINAEFDRLGLPPVVI----- 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
           +   D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 113 DRVTDTLALARRKHPMGPN--------------SLDALCRRYGIDNSHRAKHGALLDSEL 158

Query: 184 TLALVWLI 191
              +   +
Sbjct: 159 LAEVYIEM 166


>gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 1449

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 27/204 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   ++  +   V++ +    I+                     IT IT
Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKI-KAGRIIDRYSQL---INPGISIPYHITEITSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++      ++ E   +  +F       ++  +N  FD  + +              + N
Sbjct: 478 NEQVANQPKID-EVIGKFVEFI---GDAVLVAHNAPFDMGFIKR---------DIKEYLN 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +    ++D ++      PD  +          + L DL  + G+     H A  D  AT
Sbjct: 525 IDLESSVIDTLQMARDLFPDFKK----------YGLGDLNKSLGLALEKHHRAVDDSQAT 574

Query: 185 LALVWLIREKKPKLFEYLYDYRNK 208
             +  +  EK  +         NK
Sbjct: 575 ANMFIIFLEKYKEKGIEYLKDINK 598


>gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
 gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
          Length = 1449

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   +   +   V++ +    ++                     IT IT
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +  ++    + I +F       ++  +N  FD  + +    +     Y+ S   
Sbjct: 478 NEQVANEPKID----KVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 530

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D ++      PD  +          + L DL    G+     H A  D  AT
Sbjct: 531 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 574

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             +  +  EK  +         N
Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597


>gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1449

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 61/204 (29%), Gaps = 27/204 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   ++  +   V++ +    I+                     IT IT
Sbjct: 422 FVVFDIETTGLNSHTNKIIEIGAVKI-KAGRIIDRYSQL---INPGISIPYHITEITSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++      ++ E   +   F       ++  +N  FD  + +             S   
Sbjct: 478 NEQVANQPKID-EVIGKFVDFI---GDAVLVAHNAPFDMGFIKRDIKEYLNIDLENS--- 530

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R                     + L DL  + G+     H A  D  AT
Sbjct: 531 ---VIDTLQMAR-------------DLFPDFKKYGLGDLNKSLGLALEKHHRAVDDSQAT 574

Query: 185 LALVWLIREKKPKLFEYLYDYRNK 208
             +  +  EK  +         NK
Sbjct: 575 ANMFIIFLEKYKEKGIEYLKDINK 598


>gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1]
          Length = 929

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 79/238 (33%), Gaps = 32/238 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   DR  QF  V V +  + I +          +     +   +TGI+
Sbjct: 13  YAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQAVPKQIQSLTGIS 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I+ +       I   +N+ FD  +      R            
Sbjct: 69  NTQVQKAPYFE-DVAHTIYHYLED---TIFVAHNVHFDYNFLARELVRCGTPPLTI---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++ +                    SF+L DL+ + G+ H N H A +D   T
Sbjct: 121 --PAIDTVELAQIF-------------LPTEKSFRLSDLSESLGLSHENPHQADSDAQVT 165

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L+ LI+EK   L           ++ +L           +   +   +     + P
Sbjct: 166 AELLLLIQEKMKSLPLVTM-----EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNP 218


>gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 61/207 (29%), Gaps = 27/207 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +  G+ +   +    +    +  P  D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLDNRADRIIEIGGIELFNHF-PTGNVIHIYINP-GDQKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         AE +  I  FF          +N  FD  +      R             
Sbjct: 62  EFLKDK-KPFAEVAEEILTFFGDAK---WIAHNATFDMGFINAELARIGLPPIL-----P 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 113 ERVLDTLSMARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQ 210
              +   +   +   F       +   
Sbjct: 159 LAEVYIEMIGGRQAAFGLSMTATSGQN 185


>gi|206974778|ref|ZP_03235693.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus H3081.97]
 gi|217959123|ref|YP_002337671.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus AH187]
 gi|222095271|ref|YP_002529331.1| bifunctional ATP-dependent DNA helicase/DNA polymerase iii subunit
           epsilon [Bacillus cereus Q1]
 gi|206746797|gb|EDZ58189.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus H3081.97]
 gi|217066733|gb|ACJ80983.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH187]
 gi|221239329|gb|ACM12039.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
          Length = 934

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  + E + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
 gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
          Length = 956

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 32/191 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   ++  D ET G +  +D   + A V+ +   E +E+      +P      +  +  +
Sbjct: 1   MNQIYIAIDVETTGLEAGVDEIIEIAAVKFNAD-EVLETFSTL-VQPVHSLPLN--SSRL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT           AE + R   F        +  +N+ FD    R    R        
Sbjct: 57  TGITADMLASAPR-FAEVAPRFAAFLKN---YPLVGHNVEFDLRMLRAQGMRL------- 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +D  ++                      +++L  LA   GI H  AH A +D
Sbjct: 106 ----PQPAFDTFELA-------------TLLMPRTPAYRLSALAATLGIHHDEAHRALSD 148

Query: 181 VYATLALVWLI 191
              T  +   +
Sbjct: 149 ADVTRQIFLYL 159


>gi|254774974|ref|ZP_05216490.1| hypothetical protein MaviaA2_09919 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 648

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 28/207 (13%)

Query: 4   HFVIYDYETFGR------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            FV+ D ET G       + A D   +   V+V R    +                 P+ 
Sbjct: 44  TFVVVDLETTGGRSTSTGETAPDAITEIGAVKV-RDGVVLGEFATL---VDPQRSIPPQI 99

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + +TGIT         ++A       +F  +    ++  +N  FD  + R    +     
Sbjct: 100 MRLTGITTAMVSDAPAIDA-VLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDI-- 156

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R  +L  +R                + A S +L  LA    +     H A
Sbjct: 157 -------AWPRPRVLCTVRLARRVL--------SREEAPSVRLASLARLFAVTTQPTHRA 201

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
             D  AT+ ++  + E+      + Y 
Sbjct: 202 LDDARATVDVLHALIERVGNQGVHTYA 228


>gi|118466522|ref|YP_881505.1| hypothetical protein MAV_2300 [Mycobacterium avium 104]
 gi|118167809|gb|ABK68706.1| DNA polymerase III, epsilon subunit [Mycobacterium avium 104]
          Length = 643

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 28/207 (13%)

Query: 4   HFVIYDYETFGR------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            FV+ D ET G       + A D   +   V+V R    +                 P+ 
Sbjct: 39  TFVVVDLETTGGRSTSTGETAPDAITEIGAVKV-RDGVVLGEFATL---VDPQRSIPPQI 94

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + +TGIT         ++A       +F  +    ++  +N  FD  + R    +     
Sbjct: 95  MRLTGITTAMVSDAPAIDA-VLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDI-- 151

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R  +L  +R                + A S +L  LA    +     H A
Sbjct: 152 -------AWPRPRVLCTVRLARRVL--------SREEAPSVRLASLARLFAVTTQPTHRA 196

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
             D  AT+ ++  + E+      + Y 
Sbjct: 197 LDDARATVDVLHALIERVGNQGVHTYA 223


>gi|324325658|gb|ADY20918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 934

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  + E + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 946

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/474 (13%), Positives = 138/474 (29%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+  +F+       +  +N++FD  +      R   D        
Sbjct: 463 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 512

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L       +       ++       ++  +     + 
Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679

Query: 305 PIDYCKKEHFERWGIDHKRCLE---NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           P    +    ++   D K   E   N+  L ++  +     +  +      +      L 
Sbjct: 680 PPATYQHLLDDKLIKDKKELQEIITNIYKLGKELGIPVVATSDAHYIDKKDAIYRKILLS 739

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                      +  +     +++      F D ++         +N     +        
Sbjct: 740 AQKANRGKNYELPDLHFYTTQEMLD-AFSFLDPKI---AEEIVIKN-----TNMIADKIE 790

Query: 422 EH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G+   + + + L   L+ +I 
Sbjct: 791 NVEPIKSGLYPPHIENADKEMEQLTYDKAHELYGNPLPKIVKDRLEYELKSIIS 844


>gi|229195843|ref|ZP_04322602.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1293]
 gi|228587616|gb|EEK45675.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1293]
          Length = 934

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  + E + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|229090605|ref|ZP_04221839.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-42]
 gi|228692748|gb|EEL46473.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-42]
          Length = 934

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  + E + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|317471587|ref|ZP_07930931.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
 gi|316900902|gb|EFV22872.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
          Length = 1478

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 88/289 (30%), Gaps = 30/289 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   DR  +   V+V    E  E+   F            +   +T IT
Sbjct: 452 FVVFDIETTGFNSQTDRIIEIGAVKV-IAGEITETFSEF---INPQIPIPFKITQLTTIT 507

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +    ++A     + +F       ++  +N  FD  +      R   D +      
Sbjct: 508 DEMVMNADTIDA----VLPRFLEFCGDSVLVAHNAGFDTGFIHENAKRLDLDFHPT---- 559

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D +    +      +          F L +L     I+    H A  D  AT
Sbjct: 560 ------IVDTLGLSRSLMTHLAK----------FTLDNLCKNLNIKLETHHRAVDDATAT 603

Query: 185 LALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             +     +   +   +  D  N+        I        + +        +   L++ 
Sbjct: 604 GKIFIKFVQMLEEKEIFDLDQVNEFVAGSEDFIKKGRTYHGIILVKNNTGRVNLNRLVSE 663

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291
                  +   +  +L    R    + S   A  L+++  + +    + 
Sbjct: 664 SHVRYFNRRPRMPKSLINKYREGLIIGSACEAGELYSAIVDQRSEEEIA 712


>gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1449

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G +   +   +   V++ +    ++                     IT IT
Sbjct: 422 FVIFDIETTGLNSHTNEIIEIGAVKI-KSGRIVDRYSQL---INPGRPIPYHITEITSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +  +  E   +   F       ++  +N  FD  + +    +     Y+ S   
Sbjct: 478 DEQVANEPKIN-EVIGKFVDFV---GDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 530

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D ++      PD  +          + L DL    G+     H A  D  AT
Sbjct: 531 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 574

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             +  +  EK  +         N
Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597


>gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1449

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   +   +   V++ +    ++                     IT IT
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +  ++    + I +F       ++  +N  FD  + +    +     Y+ S   
Sbjct: 478 DEQVANEPKID----KVIGKFVDFIGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 530

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D ++      PD  +          + L DL    G+     H A  D  AT
Sbjct: 531 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 574

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             +  +  EK  +         N
Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597


>gi|329847967|ref|ZP_08262995.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Asticcacaulis biprosthecum C19]
 gi|328843030|gb|EGF92599.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Asticcacaulis biprosthecum C19]
          Length = 708

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 51/172 (29%), Gaps = 28/172 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V+ D ET G     DR  + A V+V R  + I            +         +TGI
Sbjct: 542 TYVVVDVETTGGRAVNDRVTEIAAVKV-RGGKIIAEWSSL---INPERRIPGYITQLTGI 597

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE +  +  F S     +   +N+ FD  +  + + R           
Sbjct: 598 TNEMVAGAPK-FAEIADDLAAFLS---GAVFVAHNVNFDHSFIASEYRRLER-------- 645

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                       R                 G  S+ L  L+   GI   N H
Sbjct: 646 ------------RFHAPKLCTCAGMRKYYPGHGSYGLGPLSKEYGIRLENHH 685


>gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
 gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
          Length = 1449

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   +   +   V++ +    ++                     IT IT
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +  ++    + I +F       ++  +N  FD  + +    +     Y+ S   
Sbjct: 478 DEQVANEPKID----KVIGKFVDFIGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 530

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D ++      PD  +          + L DL    G+     H A  D  AT
Sbjct: 531 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 574

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             +  +  EK  +         N
Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597


>gi|228984721|ref|ZP_04144893.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774919|gb|EEM23313.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 934

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|310658999|ref|YP_003936720.1| DNA polymerase III polc [Clostridium sticklandii DSM 519]
 gi|308825777|emb|CBH21815.1| DNA polymerase III PolC [Clostridium sticklandii]
          Length = 1417

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 82/276 (29%), Gaps = 28/276 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     D   +   V++ R  E I+S                +   +TG
Sbjct: 404 DEYVVFDIETTGFSNTSDEITEIGAVKI-RNKEIIDSFGEL---INPHMPIPLKVQELTG 459

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            E   R  +F     + I+  +N  FD  + R    R          
Sbjct: 460 ITNDLIKDKP-SIDEVLPRFLEFV---GSSILVAHNSDFDMGFIRAKAKRLNL------- 508

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L + R                      KL  +    GI   N H A  D  
Sbjct: 509 AFENKDIDTLKLSRI-------------LLPNLKRHKLNLITNHLGISLENHHRAVDDAK 555

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +     E         ++  N    +          +  ++  +   ++   LI+ 
Sbjct: 556 ATALVFIKFMEMLIDKDINTFEMVNDKLGKLDYKSIPSNHITIIARDYTGLKNLYKLISA 615

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF 278
                 YK+  I  +L    R    + S   A  L+
Sbjct: 616 SHIDYFYKNPRIPKSLLIKHREGLLIGSACEAGELY 651


>gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2]
 gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2]
          Length = 1459

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/479 (14%), Positives = 139/479 (29%), Gaps = 48/479 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V +D ET G         +F  V +++  +       FF KP            +TGI
Sbjct: 424 SYVSFDIETTGLSPKFHEIIEFGAVDINQDLKV-GEVTQFFIKPQ--AKIGAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T Q    +G+   +  +RI+      +  +   +N +FD  + +  F  N       +  
Sbjct: 481 TQQMLDSEGLSIKDGLQRIYDCL---DGKVAIAHNAKFDFNFLKEQFRLNNVPFPNVT-- 535

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
                 D L   R  +                   KL+D+    G+ +    AH    D 
Sbjct: 536 ----VIDTLIASRIGF-------------PNYKRHKLEDVTSRLGVVYDPNVAHRGDYDA 578

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
                +   I  +      + ++         L    +   +  ++      +    LI 
Sbjct: 579 KVLANVWVNIISELNSKNIFTFEDLGNFTSNDLYAKMHGYEVSTIALNNKGLKKQFELIT 638

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-----PVPIKEVH 296
                      +           F +LD   +     T    L            IKE+ 
Sbjct: 639 DCLTKKFINGPITF------KEDFVNLDRSDVLVGSGTLKGLLIDKYFYSSHDDFIKELK 692

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLL--RQQTNLRDRFKAIYNKPYTSSSQ 354
                 + P   C +   +   I  K+  + L+ +    + + +        K      +
Sbjct: 693 HYDFIEI-PAPQCFEHWIKYGFITTKQLHDGLSEIISEAKKHSKICIATADVKYLDPWDK 751

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFF---RYRARN-- 407
           ++   L         R  +    +    +L   N  F  +D  L +  F   +  A    
Sbjct: 752 EIFMSLVYAKGIKNARHYLFDYKKAEEGKLVIPNQRFLTTDEMLEQFAFLNDKKLAEEIV 811

Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
             +T       + +E  K  L     ++ K KL  L  +    +  E L   + + +  
Sbjct: 812 IDNTQKIANMAENIEVIKTGLFTPEFDDSKKKLHDLVYKNAHAKYGENLPELIQKRIDS 870


>gi|304439997|ref|ZP_07399890.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371489|gb|EFM25102.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 1403

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 28/191 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV++D E+ G   A D   +   V++      ++    F            + V +T 
Sbjct: 391 QKFVVFDIESTGLSPASDMITEIGAVKI-EDGVIVDRFSRF---VNPMRPIPEKVVELTR 446

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +    +  +E      I  F        +  +N  FD  + R    +          
Sbjct: 447 ITNEMVANEPPIEV----VIKDFVEFIGDATLVAHNAEFDTAFIRRDMDKVGLK------ 496

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 + +LD +    A   D             F L  +    G+    AH A  D  
Sbjct: 497 ----FDFPVLDTLYLSRAILNDL----------KRFNLSAICKKLGVNLEGAHRAVNDAE 542

Query: 183 ATLALVWLIRE 193
           AT      + +
Sbjct: 543 ATAEAFIKMMK 553


>gi|300117431|ref|ZP_07055221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus SJ1]
 gi|298725266|gb|EFI65918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus SJ1]
          Length = 934

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  + E + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|228945241|ref|ZP_04107597.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814476|gb|EEM60741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 934

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  + E + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|171056716|ref|YP_001789065.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170774161|gb|ACB32300.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 210

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 62/207 (29%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G   +   R  +   V V R  E +   +             P    +
Sbjct: 1   METIAVIDFETTGMTPSQGARATEIGAVLV-RGGEIVGQYQSLMYS---GVHIPPFIEQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E +  R +  F      C +  +N  FD  +      R   +    
Sbjct: 57  TGISNAMLRDAPPAE-QVMREVAAFTR---GCPMVAHNAAFDRGFWLAERERAGCEPDL- 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                               F+   +     +  A + KL  LA   G+  +  AH A A
Sbjct: 112 -----------------AQEFACTVLLSRRLNTEAPNHKLGTLASWFGLPNNGRAHRALA 154

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYR 206
           D   T  L+  +++   + +      R
Sbjct: 155 DALTTAHLLVRLQDLVAQRYADQLQGR 181


>gi|154686487|ref|YP_001421648.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus amyloliquefaciens FZB42]
 gi|154352338|gb|ABS74417.1| DinG [Bacillus amyloliquefaciens FZB42]
          Length = 928

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 80/277 (28%), Gaps = 28/277 (10%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              FV+ D ET G      D+  Q A V +    +  E    +      +    P    +
Sbjct: 3   KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNQAIPPFIEQL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+      + +     +  I       +      +NI FD  + R+      Y+    
Sbjct: 59  TGISSGMVENE-LPFEAVAEEIFHLL---DGAYFVAHNIHFDLGFVRHELSEAGYELP-- 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +++ R ++                  +KL +L     I H   H A +D
Sbjct: 113 ----DCEVLDTVELSRIVFPGFEG-------------YKLGELCAELNIVHDRPHRADSD 155

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
              T  +   I  K   L         +     + D+  +             +S     
Sbjct: 156 AEVTGLVFLDILHKLKHLPLPTLKQLRRLSQHFISDLTLLLDSFIHESRPAEEKSCIPYA 215

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL 277
           +     P +       N + D+  + +     L+  +
Sbjct: 216 SFSIKEPDHIPVSRPVNAAIDLEKWNEEKEQILSGII 252


>gi|332799219|ref|YP_004460718.1| DNA polymerase III subunit alpha [Tepidanaerobacter sp. Re1]
 gi|332696954|gb|AEE91411.1| DNA polymerase III, alpha subunit [Tepidanaerobacter sp. Re1]
          Length = 1422

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/480 (13%), Positives = 130/480 (27%), Gaps = 57/480 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     D   +   V++    E I+    F        L     + +TGI
Sbjct: 407 TFVVVDIETTGLCFDNDEIIEIGAVKI-LNNEIIDRFSSF---IKPQRLIPTNIINLTGI 462

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E    + +  F       +   +N  FD  + R    +           
Sbjct: 463 TNDMLKTARPIE----KVLPSFMEFLGDGVFVAHNAEFDSGFIRREASKLGIPF------ 512

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D L + R I+                 + +L  LA    I+  + H A  D   
Sbjct: 513 -KNNILDTLALARIIF-------------SKLKNHRLDTLAKELNIKMGSHHRAIDDAKT 558

Query: 184 TLALVWLIREKKPKLFEYLYDYRN-KNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
              ++  +  K  +         N   +L+K     +      +       ++   L++ 
Sbjct: 559 AALILQELLIKVNEAGINNLSQINDIYKLKKGATNLSSYHATILVKDNIGLKNLYKLVSV 618

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN--KC 300
                 Y+   I  +L    R    + S   A  LF S         V       +  + 
Sbjct: 619 SHLDFFYRHPRIPKSLLRTYRKGLLIGSGCQAGELFQSLLHFCSYEKVKEISGFYDFLEI 678

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             L    +     +       +     +  + +            +      + DV    
Sbjct: 679 QPLHNNAFLIDGGYASGMQRLEELNRKIYDIGKN-----------SGKPVVMTGDVHFAN 727

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRY---RARN----FPHTLS 413
            +                   E    L    +D  L E         A       P+ ++
Sbjct: 728 PEDEILRKILLNAQGFQDADKESR--LYFKTTDEMLNE-CKYLGTEIANEVVIKNPNIIA 784

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
           ++     +      L   +I   + ++  +    + +  G++    +   +   L  ++ 
Sbjct: 785 DEVNDGIVPF-PDGLYPPKIAGAEQEIIDMTYRQAKKLYGEKLPPIVEKRIKHELNSIVN 843


>gi|42780745|ref|NP_977992.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus ATCC 10987]
 gi|42736665|gb|AAS40600.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus ATCC 10987]
          Length = 934

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
          Length = 229

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 27/216 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D  +DR  +  G+ +   +    +T   +  P  D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         AE +  I  FF          +N  FD  +    F R             
Sbjct: 62  EFLKDK-KAFAEVAEEILAFFGDAK---WIAHNATFDMGFINAEFARIGLPPIL-----P 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    G++  H   H A  D   
Sbjct: 113 ERVVDTLSMARRKHPMGPN--------------SLDALCRRYGVDNSHRAKHGALLDSEL 158

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
              +   +   +          ++    R  + +++
Sbjct: 159 LAEVYIEMIGGRQAALGLGLSGQSGQTARGEMAMED 194


>gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 706

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 57/191 (29%), Gaps = 31/191 (16%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFI 60
            + ++D ET G + A  D   Q   +R+    + +  E  +             PE++  
Sbjct: 515 SYTVFDTETTGLNPAQGDEIIQIGALRI-LNGKLLRGERFDQL---VDPGREIPPESIPY 570

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI P+       + AE     H +    +T ++G+N      +                
Sbjct: 571 HGIHPEMVQGQPRI-AEVLPAFHAY--ASDTVLVGHNVAFDMRFLQLKEAATGL------ 621

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                          R         +          S  L+ +A   G+E    H+A +D
Sbjct: 622 ---------------RFDQPVLDTLLLASIAQPHEPSHSLEAIAARLGVEITQRHNALSD 666

Query: 181 VYATLALVWLI 191
              T  +   +
Sbjct: 667 ALVTAEVFLRL 677


>gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 315

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 102/343 (29%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 TNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNALDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 162 AAVYQKCAAIEEEGNRKV----NKAVLDETAVYEAVKEMLARNKRNVEWLRCMNVGSYL- 216

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +           K + TS           +     N   +L 
Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTEILEDDVKEICTSLT-----CEPALNSEAGNTRIMLN 270

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++   K         +   L+ L   ++     D     Y  
Sbjct: 271 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312


>gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
 gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
          Length = 1514

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 28/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++++D ET G     ++  +   V+V +  E+I+    F      +         +T IT
Sbjct: 458 YIVFDIETTGLSQKKNKIIEIGAVKV-KDGEEIDRFSEF---INPEEPIPYSIEQLTSIT 513

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +    V  +    + +F       I+  +N  FD  + +                 
Sbjct: 514 DEMVMHAPTV--DVI--LPKFLEFCGDDIVVAHNAAFDTGFIKKNAKDLGMKFDNT---- 565

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D M   +   P+  +          F L  +  A  +++ + H A  D  AT
Sbjct: 566 ------IMDTMTLSHVLLPELGK----------FTLDRVCKALNVKNEHHHRAVDDANAT 609

Query: 185 LALV 188
             + 
Sbjct: 610 AKIF 613


>gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
 gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
          Length = 315

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 92/276 (33%), Gaps = 36/276 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPSRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++      +         
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGFPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV- 243
            A+       + K    +    NK  L +    + +  ++  +           + + + 
Sbjct: 162 AAVYQKCTSIEEKGKRKV----NKAVLDETAVYEAVKEILVRNKRNVEWLRCMNVGSYLD 217

Query: 244 --AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL 277
             A++P  +  V G        + +D D  ++   L
Sbjct: 218 IKAFYPVMRLKVKGRKKYVLTEIVED-DVKEICTSL 252


>gi|229155207|ref|ZP_04283319.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           4342]
 gi|228628334|gb|EEK85049.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           4342]
          Length = 934

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKRHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K]
 gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 1433

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/484 (15%), Positives = 151/484 (31%), Gaps = 53/484 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V++D ET G     D   +F   ++    + I++ + FF KP  +     +   ITG
Sbjct: 398 ETYVVFDLETTGLSPIFDDIIEFGAQKI-LNGKVIDTLQ-FFVKPNKE--ISEKITLITG 453

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  Q      + E E  ++I +F        +  +N  FD          NF +     +
Sbjct: 454 IKNQDVENA-ISEKEALKKILEFMGDH---TVVAHNATFDM---------NFINEKIEKY 500

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180
           +   S   ++D +       P+  +          F L++LA  +G       AH A  D
Sbjct: 501 NFQESNLQIIDTLVVSKIIEPEAKK----------FSLENLASRSGIIYNSTEAHRADYD 550

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
                 +  L  +K   +    +D     +   + +      +  ++      +     I
Sbjct: 551 ADVLAKVWNLYIQKLSDMNVKYFDDIYNFKSNIIYEKTRPFEITILAKNQSGLKELFQKI 610

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV-HLNK 299
           +  +    +    +      +      + S  L   +     E+       ++E      
Sbjct: 611 SLTSTKQYFNGPKMFFEDLLEKSKNILIGSGTLKSLIIN---EVFRGTRKGLREYLKYFD 667

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              ++P             +  +       L+ +   L     A+ +  Y    + +  +
Sbjct: 668 YVEIIPPKNFSHWIKNEDILKEELLEGLKILVEESKKLNKIVVAVGDVRYVQKDEKILHE 727

Query: 360 LYDG--------FFADVDRQIMDRILRTAPEQLSTLNLPF---SDRRLPELFFRYRARNF 408
           +Y                 Q               +   F    D    +L      +N 
Sbjct: 728 IYINAKGLQGIRHPLFKYDQSETDYPTLNYLNTQEMIDQFLFLQD---NDLIKEIVVKN- 783

Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYL 464
            H +S + + +  E  KK L   +IE   N L+ L    + E  G    E +I+ + + L
Sbjct: 784 THLISNQIENNI-EVIKKDLFTPKIENSANLLRELVYAKAFEIYGKNLPELIISRIEKEL 842

Query: 465 QWVI 468
             +I
Sbjct: 843 NPII 846


>gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
 gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
          Length = 315

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 104/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPSRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++      +         
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGFPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + K    +    NK  L +    + +  ++  +           + + + 
Sbjct: 162 AAVYQKCTSIEEKGKRKV----NKAVLDETAVYEAVKEILVRNKRNVEWLRCMNVGSYL- 216

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +           K + TS      +    +K    N   +L 
Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTEIVEDDVKEICTSL-----ICEPALKSEVGNTRVMLN 270

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            +    K         +   L+ L   R+     D     Y  
Sbjct: 271 SLADVLKL-ESYILEQYDFVLQALDTYRENETNADEKLKEYLN 312


>gi|229172279|ref|ZP_04299843.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
 gi|228611267|gb|EEK68525.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
          Length = 934

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  +         Y   
Sbjct: 57  ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRWAGYTEV 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|291521660|emb|CBK79953.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Coprococcus catus GD/7]
          Length = 245

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 28/203 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V++D ET G     D   +   ++V  Q +  +    F            +   +
Sbjct: 1   MVKDYVVFDLETTGLSPDKDTIIEIGALKV-IQGKVADRFSEF---INPHQKLTQQISEL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT                 +  F       ++  +N+ FD  +++    +        
Sbjct: 57  TGITDDMLAGA----RNLQVVVGDFVDFCEDYVVVGHNLGFDYRFTKMAAEKYHLPF--- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                +   D L + + ++                 S  L  L    GI + +AH A  D
Sbjct: 110 ----EHEGIDTLKIAKTVH-------------KDLPSRSLGALCEHYGIINSSAHRAYHD 152

Query: 181 VYATLALVWLIREKKPKLFEYLY 203
             AT  L   +          L+
Sbjct: 153 ALATAKLYQTLAHYFETSEPKLF 175


>gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
 gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
          Length = 318

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  AT+ KL+ L    GI    +H+A  D    
Sbjct: 119 KNKVIDTVFLAKKY-------------MKHATNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +        +  K + TS           +K    N   +L 
Sbjct: 220 -DIKAFYPVMRVKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 273

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++             +   L+ L   ++     D     Y  
Sbjct: 274 SLEDVM-RLESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 315


>gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 648

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%)

Query: 4   HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            FV+ D ET G           D   +   V+V R    +            +    P+ 
Sbjct: 42  TFVVVDLETTGGRTKATGGNAPDAITEIGAVKV-RGGVVLGEFATL---VDPERSIPPQI 97

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V +TGIT         ++A     +  F       ++  +N  FD  + R    R     
Sbjct: 98  VRLTGITTAMVSDAPRIDA----VLPMFLEFAGDAVLVAHNAGFDIGFLRAAAARCDI-- 151

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R  +L  +R                + A S +L  LA    +     H A
Sbjct: 152 -------AWPRPKVLCTVRLARRVL--------SREEAPSVRLGALARLFAVAAQPTHRA 196

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
             D  AT+ ++  + E+      + Y 
Sbjct: 197 LDDARATVEVLHALIERVGNQGVHTYA 223


>gi|228926672|ref|ZP_04089741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228833048|gb|EEM78616.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 934

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  + E + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|65318908|ref|ZP_00391867.1| COG1199: Rad3-related DNA helicases [Bacillus anthracis str. A2012]
          Length = 934

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  + E + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEEXRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|196039095|ref|ZP_03106402.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus NVH0597-99]
 gi|196030240|gb|EDX68840.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus NVH0597-99]
          Length = 934

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  + E + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
 gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
          Length = 865

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 25/192 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V++D E+ G D + D   Q A VR+D     + S E    +      P  ++  +  
Sbjct: 497 KNVVVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRSFE----QLLHPSKPVGQSEAVHH 552

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            +       G    +       F       ++  +N+ FD     +   R       +  
Sbjct: 553 FSDALLAERGGEPPQVLAEFCSFVR---GAVVVGHNVGFDLTILASELSRLGLPPAEYE- 608

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 +D LD+ R  Y                 + KL+ L+     E  ++HDA  D+ 
Sbjct: 609 ----EYYDTLDLARRFY-------------PDLPNHKLETLSKLLDTEVKSSHDAMDDIL 651

Query: 183 ATLALVWLIREK 194
           AT  ++  +   
Sbjct: 652 ATKDVLLHLTAH 663


>gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS]
 gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
          Length = 630

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 28/203 (13%)

Query: 4   HFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            FV+ D ET G        D   +   V+V R  E +                 P+ V +
Sbjct: 29  TFVVVDLETTGGRATGERPDAITEIGAVKV-RGGEVLGELATL---VDPGRAIPPQIVSL 84

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT         +E      +  F       ++  +N  FD  + R    +        
Sbjct: 85  TGITTAMVCAAPRIE----SVLPAFLEFARGSVLVAHNAGFDIGFLRAAAEQCGL----- 135

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R  +L  ++                D A S +L  LA     +    H A  D
Sbjct: 136 ----TWPRPPVLCTVKLARRVL--------TRDEAPSVRLSALAQLFRAKTTPTHRALDD 183

Query: 181 VYATLALVWLIREKKPKLFEYLY 203
             AT+ ++  + E+      + Y
Sbjct: 184 ARATVDVLHGLIERIGNQGVHTY 206


>gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM
           44728]
 gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 578

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 25/196 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F++ D ET G         +   V+V R  E +                D     +TGI
Sbjct: 25  TFMVVDLETTGVASDACSITEIGAVKV-RGGEVLGEYATL---VNPGEAIDARISALTGI 80

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E      +  F       +   +N  FD  + R+   +           
Sbjct: 81  TDAMVADAPAIE----EVLPSFLEFARGAVWVAHNAPFDVGFLRSACAQAELPW------ 130

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R  ++D +                     + +L  LA   G     +H A  D  A
Sbjct: 131 ---PRPQVVDTVVLARRL--------VDRSEVPNKRLSTLARYFGARVKPSHRALDDARA 179

Query: 184 TLALVWLIREKKPKLF 199
           T+ ++  + E+    +
Sbjct: 180 TVDVLHALLERLGTHY 195


>gi|295398569|ref|ZP_06808601.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Aerococcus viridans ATCC 11563]
 gi|294973170|gb|EFG48965.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Aerococcus viridans ATCC 11563]
          Length = 957

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 30/255 (11%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           T  + + D ET G      DR  Q   V   +  + ++           +     E   +
Sbjct: 5   TTTYAVLDLETTGSTYDNGDRIIQIG-VAFVQNGQVVDQFAT---DIFPNQEIPREITKL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT ++  R      E    I   +   +  +I  +NI FD  +    F  + Y +   
Sbjct: 61  TGITNEQVKRAPK--FEAVAEI--LWQKLSNTVIVAHNIGFDYKFLDKSFQAHGYPAM-- 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                + R D ++++R ++  +              S+KL +  LA+GI+  NAH A  D
Sbjct: 115 ----THDRVDTVEMVRTLFPTAD-------------SYKLGEFCLAHGIQLENAHTAIDD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  ++ + +EK   +   L+              Q    +         ++     I
Sbjct: 158 AVATAHILIMCQEKVATMPVELFAQL--QPFLHYFIGQTGDYMALWFKDHKGAKRPCEYI 215

Query: 241 APVAWHPRYKDSVIG 255
           AP   +P+  +  I 
Sbjct: 216 APFVLNPKSANFHIF 230


>gi|118477094|ref|YP_894245.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis str. Al Hakam]
 gi|196046614|ref|ZP_03113838.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB108]
 gi|225863505|ref|YP_002748883.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB102]
 gi|229183836|ref|ZP_04311053.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
           6E1]
 gi|118416319|gb|ABK84738.1| ATP-dependent DNA helicase [Bacillus thuringiensis str. Al Hakam]
 gi|196022547|gb|EDX61230.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB108]
 gi|225789838|gb|ACO30055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB102]
 gi|228599685|gb|EEK57288.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
           6E1]
          Length = 934

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  + E + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|30261638|ref|NP_844015.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Ames]
 gi|47526838|ref|YP_018187.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184469|ref|YP_027721.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Sterne]
 gi|165869397|ref|ZP_02214056.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0488]
 gi|167639095|ref|ZP_02397368.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0193]
 gi|170706543|ref|ZP_02897003.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0389]
 gi|177650486|ref|ZP_02933453.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0174]
 gi|190568647|ref|ZP_03021552.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227815611|ref|YP_002815620.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. CDC 684]
 gi|229602233|ref|YP_002866045.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0248]
 gi|254734478|ref|ZP_05192190.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755128|ref|ZP_05207162.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Vollum]
 gi|254759665|ref|ZP_05211689.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Australia 94]
 gi|30255866|gb|AAP25501.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. Ames]
 gi|47501986|gb|AAT30662.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178396|gb|AAT53772.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           anthracis str. Sterne]
 gi|164714837|gb|EDR20355.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0488]
 gi|167512885|gb|EDR88258.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0193]
 gi|170128641|gb|EDS97508.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0389]
 gi|172083630|gb|EDT68690.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0174]
 gi|190560247|gb|EDV14227.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227006832|gb|ACP16575.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. CDC 684]
 gi|229266641|gb|ACQ48278.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0248]
          Length = 934

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  + E + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
 gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
          Length = 241

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 27/216 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D  +DR  +  G+ +   +    +T   +  P  D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         AE +  I  FF          +N  FD  +    F R             
Sbjct: 62  EFLKDK-KAFAEVAEEILAFFGDAK---WIAHNATFDMGFINAEFARIGLPPIL-----P 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    G++  H   H A  D   
Sbjct: 113 ERVVDTLSMARRKHPMGPN--------------SLDALCRRYGVDNSHRAKHGALLDSEL 158

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
              +   +   +          ++    R  + +++
Sbjct: 159 LAEVYIEMIGGRQAALGLGLSGQSGQTARGEMAMED 194


>gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1449

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 60/203 (29%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   +   +   V++ +    ++                     IT IT
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +  +  E   +   F       ++  +N  FD  + +    +     Y      
Sbjct: 478 DEQVANEPKIN-EVIGKFVDFV---GDAVLVAHNAPFDMGFIKRDIKKYLNIDY------ 527

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S  D L + R                     + L DL    G+     H A  D  AT
Sbjct: 528 KCSVIDTLQMAR-------------DLFPDLKKYGLGDLNKTLGLALEKHHRAVDDSQAT 574

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             +  +  EK  +         N
Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597


>gi|229121184|ref|ZP_04250421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           95/8201]
 gi|228662303|gb|EEL17906.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           95/8201]
          Length = 934

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|49477263|ref|YP_035758.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196033564|ref|ZP_03100976.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus W]
 gi|218902753|ref|YP_002450587.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH820]
 gi|49328819|gb|AAT59465.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195993998|gb|EDX57954.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus W]
 gi|218538657|gb|ACK91055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH820]
          Length = 934

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|260663059|ref|ZP_05863952.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552680|gb|EEX25680.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           fermentum 28-3-CHN]
          Length = 946

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 62/201 (30%), Gaps = 28/201 (13%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G  V    R  Q   V V +  + I   E    K     +       +TGI
Sbjct: 14  YAVVDLETTGTSVKTGSRIIQIGCVLV-QDGQVINEFET---KINPRTVVPLTIEQLTGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                    + E + +  +          I   +N+ FD  +    F R           
Sbjct: 70  KNNDVKDAPLFE-DVAPTLKSLLDD---TIFVAHNVNFDFPFLNAEFERAG------EAP 119

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + + +                  A SF+L+DL     I+H   H A +D  A
Sbjct: 120 LTIPAIDTVTLSQI-------------LMPTAPSFRLRDLTSYLAIDHDQPHSAVSDAVA 166

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+  + ++   L      
Sbjct: 167 TAHLLIELLKRLADLPTITLQ 187


>gi|227894158|ref|ZP_04011963.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
 gi|227864030|gb|EEJ71451.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
          Length = 318

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 24/206 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ + D ET G     DR  +   V+V    + ++        P ++ +P      + GI
Sbjct: 32  NYTMLDIETTGLSPYRDRITELGAVKVRNN-QIVDQYTNLVKFPKNNKVP-AFITKLNGI 89

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++ + +G+   +  +   +F       IIGYN               NF       ++
Sbjct: 90  TEEQIVNEGIPAEQAIKEFREFIGDDP--IIGYNVNFDL----------NFLYDLSQKYN 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +DV+R   A+                 +L D     GI  V  H   AD   
Sbjct: 138 LPVLNNDYVDVLRLARAYY----------PRERHNRLIDCMQRAGIAQVEQHHGLADSLD 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209
           T+ +     +   +        R KN
Sbjct: 188 TIKVYNDFNKHFTEELLEAARSRIKN 213


>gi|184155667|ref|YP_001844007.1| helicase [Lactobacillus fermentum IFO 3956]
 gi|183227011|dbj|BAG27527.1| helicase [Lactobacillus fermentum IFO 3956]
          Length = 943

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 62/201 (30%), Gaps = 28/201 (13%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G  V    R  Q   V V +  + I   E    K     +       +TGI
Sbjct: 11  YAVVDLETTGTSVKTGSRIIQIGCVLV-QDGQVINEFET---KINPRTVVPLTIEQLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                    + E + +  +          I   +N+ FD  +    F R           
Sbjct: 67  KNNDVKDAPLFE-DVAPTLKSLLDD---TIFVAHNVNFDFPFLNAEFERAG------EAP 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + + +                  A SF+L+DL     I+H   H A +D  A
Sbjct: 117 LTIPAIDTVTLSQI-------------LMPTAPSFRLRDLTSYLAIDHDQPHSAVSDAVA 163

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+  + ++   L      
Sbjct: 164 TAHLLIELLKRLADLPTITLQ 184


>gi|16801079|ref|NP_471347.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria innocua Clip11262]
 gi|16414514|emb|CAC97243.1| dinG [Listeria innocua Clip11262]
          Length = 928

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 29/188 (15%)

Query: 1   MTNH-FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M    +++ D ET G   +  DR  QFA   V    +++E+   F      +        
Sbjct: 1   MKKKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYSTF---LNPEKPIPAFIQ 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI+P+      + E + +  I          I   +N+ FD  +      R      
Sbjct: 57  ELTGISPKDVKNAPLFE-DVAPIIASLLED---TIFVAHNVSFDWTFLEREMTRAGI--- 109

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ R +Y              G  S+KLQDL+   G+ H   H A 
Sbjct: 110 ---SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHRAD 153

Query: 179 ADVYATLA 186
           +D   T  
Sbjct: 154 SDAEVTAD 161


>gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Oceanobacillus iheyensis HTE831]
 gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 939

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 68/208 (32%), Gaps = 28/208 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            N FV+ D ET G   +  D+  +   V ++   E I++   FF          P    +
Sbjct: 1   MNRFVVIDLETTGHAPSKNDKIIEIGMVIIEGD-EIIDTKTTFF---NPGQPIPPFITNL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+        +   E +  I           I  +N+ FD  +       N  D    
Sbjct: 57  TGISDDDVADAPL-FTEKALSIKSILEDS---YIIAHNVNFDLGFLNAELKENGIDRLHN 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     +LD +                   A  +KL  L+    ++H + H A +D
Sbjct: 113 ---------QVLDTVELSRILF----------PTAPGYKLSQLSDHFNLQHDDPHRALSD 153

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNK 208
            Y T  L   + +K  +L     +   K
Sbjct: 154 AYVTAKLFQKLMDKINQLPYETIEQWLK 181


>gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
 gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
          Length = 315

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLLEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 162 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 216

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +        +  K + TS           +K    N   +L 
Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 270

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++   K         +   L+ L   ++     D     Y  
Sbjct: 271 SLEDVMKL-ESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312


>gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 1437

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/475 (13%), Positives = 139/475 (29%), Gaps = 47/475 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E IE  + F       +    + + +T IT
Sbjct: 420 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIERFDKF---INPHHPLSEQTINLTSIT 475

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        EA   ++   F        +  +N++FD  +      RN +         
Sbjct: 476 DEMVSAAD-DEAIVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRNGFSEI------ 525

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                    L  LA    +   + H A  D  AT
Sbjct: 526 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 572

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP-LVHVSGMFGASRSNTALIAPV 243
             L++ + +   + +         N        +   P  + V     A   N   +  +
Sbjct: 573 GYLMYKLLDAFNEKYHEDNLNNLNNYAAHGEVYKRARPSHMTVLAKNQAGLKNLYKLVSI 632

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A   +    +     S   R+ + L       +       ++       ++        +
Sbjct: 633 AS-TKDFYRIPRTPKSDLARLHEGLFYGSGCWQGDVFIAMMQKGYDEAREKARFYDFLEV 691

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---L 360
            P     +   +    D ++  E ++ + +     ++        +     D   +   +
Sbjct: 692 QPPKNYSQLIEDGLIKDEEQLEEIISNIYKLGKELNKPVVATGDAHYVEPHDAIYRTILI 751

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQ 418
                     +    +   + +++      F   D     +       N        E  
Sbjct: 752 SAQRSNPNRNKPQPDLHFYSTQEMLD-AFSFLGED-----IAKEIVIENTNKI--ADEIS 803

Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
           +     K+ L    IE    +++ L    + E  G+   + + + +   L  +I 
Sbjct: 804 EIQ-PIKEGLYPPHIEHADEEMKKLTYDKAYELYGNPLPKIVKDRIDLELNSIIS 857


>gi|47566006|ref|ZP_00237044.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus G9241]
 gi|47556923|gb|EAL15253.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus G9241]
          Length = 934

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 64/206 (31%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                +      +L                      A S+KL+DLA  + +EH   H A 
Sbjct: 113 HCPKVDTVELGQIL-------------------LPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|313623167|gb|EFR93428.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL J1-023]
          Length = 928

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 29/188 (15%)

Query: 1   MTNH-FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M    +++ D ET G   +  DR  QFA   V    +++E+   F      +        
Sbjct: 1   MKKKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYSTF---LNPEKPIPAFIQ 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI+P+      + E + +  I          I   +N+ FD  +      R      
Sbjct: 57  ELTGISPKDVKNAPLFE-DVAPIIASLLED---TIFVAHNVSFDWTFLEREMTRAGI--- 109

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ R +Y              G  S+KLQDL+   G+ H   H A 
Sbjct: 110 ---SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHRAD 153

Query: 179 ADVYATLA 186
           +D   T  
Sbjct: 154 SDAEVTAD 161


>gi|313618186|gb|EFR90268.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL S4-378]
          Length = 931

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 29/188 (15%)

Query: 1   MTNH-FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M    +++ D ET G   +  DR  QFA   V    +++E+   F      +        
Sbjct: 4   MKKKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYSTF---LNPEKPIPAFIQ 59

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI+P+      + E + +  I          I   +N+ FD  +      R      
Sbjct: 60  ELTGISPKDVKNAPLFE-DVAPIIASLLED---TIFVAHNVSFDWTFLEREMTRAGI--- 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ R +Y              G  S+KLQDL+   G+ H   H A 
Sbjct: 113 ---SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHRAD 156

Query: 179 ADVYATLA 186
           +D   T  
Sbjct: 157 SDAEVTAD 164


>gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
 gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
          Length = 483

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  F   D ET G  VA DR  +   ++  R  E +   +             P    +T
Sbjct: 10  TTTFAFLDLETTGGSVATDRITEIG-IQFWRAGECVGQWQTL---VNPKTRISPFIEQLT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+        + E + +  + Q     +  +   +N RFD  + +  F R         
Sbjct: 66  GISNAMVADAPLFE-DIADELEQRL---DGVVFVAHNARFDYGFVKGEFRRLGR------ 115

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                    +L  ++                       +  L   +G++ V  H A  DV
Sbjct: 116 ----MFVAKVLCTVKLSRRLY----------PEFRRHNMDALIERHGLQQVQRHRAMGDV 161

Query: 182 YATLALVWLIREKKPKL 198
            A L     +  ++ + 
Sbjct: 162 AAMLGFFEHVLAQQGED 178


>gi|301053179|ref|YP_003791390.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|300375348|gb|ADK04252.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 934

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
 gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
          Length = 1504

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/388 (11%), Positives = 109/388 (28%), Gaps = 25/388 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + ++D ET G     D+  + A  +V   +   E  EV       +         IT IT
Sbjct: 412 YTVFDIETTGFSFTRDKIIEIAAYKVRGGF-IAERFEVL---INPEEQLSETTKRITNIT 467

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +    +  +E E      +F       ++  +N  FD  +                   
Sbjct: 468 DEMVENEKTIE-EVLPTFLEFIK---GTVLVAHNASFDIGFIYEKSRLLGL------QHE 517

Query: 125 GNSRWDLLDVMRAIY-------AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
             +  D L++ R  Y         +   +           F L+ L     +     H A
Sbjct: 518 PFAVIDTLNIARYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEAHHRA 577

Query: 178 KADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
             D YAT  +   ++++   +     ++ +    + ++           ++      ++ 
Sbjct: 578 IYDAYATAEVFLNMLQDFYKEEIYSYFELQASLDMNEVWRHPIPKYATVLAQTQEGYKNL 637

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296
             L++            +  +     R    + S      +F +   L           +
Sbjct: 638 FKLVSDALTTHFDGGPRLLKSAFLKYREGLLIGSGTEHSEVFEAALNLNDEQLKEAISFY 697

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQD 355
                 + P++       E   +  +     +  +      +++     +  +  +    
Sbjct: 698 --DYIEVQPLNAYLHLEKEIGALGREVIQAAIKKIITYAKEQNKIVIASSNAHYLNPEDK 755

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQ 383
              ++Y    +            T+P+Q
Sbjct: 756 KYREIYIQTKSVGGGLHPLANYETSPDQ 783


>gi|52143806|ref|YP_083022.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus E33L]
 gi|51977275|gb|AAU18825.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
          Length = 934

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|15605265|ref|NP_220051.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3328974|gb|AAC68138.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
 gi|297748666|gb|ADI51212.1| Exonuclease family protein [Chlamydia trachomatis D-EC]
 gi|297749546|gb|ADI52224.1| Exonuclease family protein [Chlamydia trachomatis D-LC]
          Length = 250

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 25/193 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G DV  DR  +FA +R     E I+S E        +     E+  I  I+
Sbjct: 9   FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EIIDSVEFL---IHPERAVSAESQKIHKIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E   RI  FF   +   I  +++ FD         R            
Sbjct: 65  DAMLRDKPK-FGEVFSRIKGFFKERD--HIVGHHVGFDLQVLSQESERLG---------- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   + +   + +  D ++       + +  L+ LA    + H   H A  DV   
Sbjct: 112 --------ETLLPKHHYVIDTLRLAKGYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMN 163

Query: 185 LALVWLIREKKPK 197
           + +   + ++   
Sbjct: 164 VKVFKHLTKRFRT 176


>gi|295107656|emb|CBL05199.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 445

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 27/192 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F+ +D ET G     DR  +   +      + + S                EA  I 
Sbjct: 5   KSKFIAFDVETTGLSEYADRIVEIGAICF-EDRKPMRSFSTL---VNPGVRISVEASRIN 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            I+ +        E +   +  +F         I+  +N RFD  + +N   R       
Sbjct: 61  HISNEMLGNAP-SENQAYEQFVEFLGDALAGNSILCAHNARFDMGFLKNTLERLG----- 114

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             +    +  D L + R                    ++K   +A    I++   H A  
Sbjct: 115 --YSGTINYVDTLSLSR-------------RLISDLPNYKQPTVAQYFNIQNNAEHRAYG 159

Query: 180 DVYATLALVWLI 191
           D      +   +
Sbjct: 160 DAEVCGMMFCKL 171


>gi|257068588|ref|YP_003154843.1| hypothetical protein Bfae_14220 [Brachybacterium faecium DSM 4810]
 gi|256559406|gb|ACU85253.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Brachybacterium faecium DSM 4810]
          Length = 551

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 57/201 (28%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V+ D ET G D A D   +   V+V R  E +     F      +         +TGI
Sbjct: 20  TLVVVDLETTGTDPAADAITEIGAVKV-RGGEVLGEFRTF---VDPERPIPAYIASLTGI 75

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                    F        +  +N RFD  +               +W 
Sbjct: 76  TDAAVAEAP-SIRTVLPMFLDF---AGDAALVAHNARFDIGFLSAQAAAC-----EITWP 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R              R D     +L  LA   G      H A +D  A
Sbjct: 127 RP-RVLDTLALAR-----------TVFRRDEVRDHRLSTLARHVGAGITPDHRALSDARA 174

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  I E+         +
Sbjct: 175 TVDVLHAIIERLGPSGASTLE 195


>gi|227498668|ref|ZP_03928812.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226904124|gb|EEH90042.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 225

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 26/185 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V+ D ET G DVA     +   V V R        + F   P       P    +TGI
Sbjct: 56  SYVVIDIETTGLDVARSAIIEIGAVHV-RNGAVSGRFQTFLT-PEPYQSLSPFITNLTGI 113

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +       E   R+  F        +  +N+ FD  +  +  YR   +     + 
Sbjct: 114 TDSDLVGAP-TFREILPRLRDFL---GGYTLVGHNVNFDINFLYDRIYRETGEHLNNPYL 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +       +                     G + + L+ L    GI   N H A  D   
Sbjct: 170 DTKKLAKTV-------------------VPGLSHYSLEALCKHFGIA-GNHHRAVDDCEL 209

Query: 184 TLALV 188
           T  ++
Sbjct: 210 TEKVL 214


>gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512]
          Length = 241

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 27/216 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D  +DR  +  G+ +   +    +T   +  P  D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         AE +  I  FF          +N  FD  +    F R             
Sbjct: 62  EFLKDK-KAFAEVAEEILAFFGDAK---WIAHNATFDMGFINAEFARIGLPPIL-----P 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    G++  H   H A  D   
Sbjct: 113 ERVVDTLSMARRKHPMGPN--------------SLDALCRRYGVDNSHRAKHGALLDSEL 158

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
              +   +   +          ++    R  + +++
Sbjct: 159 LAEVYIEMIGGRQAALGLGLSGQSGQTARGDMAMED 194


>gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 1480

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/371 (11%), Positives = 100/371 (26%), Gaps = 32/371 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+++D ET G     D   +   V+V  + E ++    F            +   +T I+
Sbjct: 456 FIVFDIETTGFSAKNDAITEIGAVKV-VKGEIVDRFSTF---VNPRRPIPFKIEELTHIS 511

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +    +E      + +F       II  +N  FD  + R    +   +        
Sbjct: 512 DAMVMNAPFIE----DILPKFLDFCEDYIIVAHNAGFDTGFIRENAKKINKE-------Y 560

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S  D + + R                     FKL  +  A  I     H A  D  AT
Sbjct: 561 NPSIIDTVAMARL-------------LLPELNRFKLDTVCKALNISLEGHHRAVNDAEAT 607

Query: 185 LALVWLIREKKPKLFEYLYD--YRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             +     ++                     ++       ++ ++       +   LI+ 
Sbjct: 608 AQIWVEFIKRLKDKGISKLSEVASLGETNADIVKKTKYNHVIILAKNDIGRINLYKLISL 667

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNKC 300
                  K   I  ++   MR    + S      ++ +  +D     +   +      + 
Sbjct: 668 SHIDYFNKRPRIPKSILAKMREGLIIGSACEQGEVYKALLNDATDDELNRIVSFYDYLEI 727

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             +    +  ++              N  ++           A  +  + +   ++  ++
Sbjct: 728 QPIANNMFLIEDEQNDIHSIEDLQEINKRIVELGNVYEKPVVATCDVHFLNPEDEIYRRI 787

Query: 361 YDGFFADVDRQ 371
                   D  
Sbjct: 788 IFYGKGYKDAD 798


>gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis]
 gi|1090178|prf||2018296A DNA polymerase III
          Length = 1435

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 151/476 (31%), Gaps = 52/476 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+YD ET G    L+   QF    + +    IE+   F          D     +TGIT
Sbjct: 404 YVVYDIETTGLSPMLNELIQFGASVI-KNGRIIETHHFF---IKPKSKLDSFTTKLTGIT 459

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +     G    E   +I   F      I+  +N  FD  + +  F  N  +        
Sbjct: 460 QEHL-EKGYELQEALEKISSIFK---ARIMVAHNAAFDHNFLKQKFIDNNIEFEE----- 510

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182
                D L++ + +                  S++L ++A    + +    AH A  D  
Sbjct: 511 -MISIDTLNLAKVLNPIY-------------RSYRLGEVASKLSVVYDPSIAHRADYDSS 556

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG-----ASRSNT 237
               +  L      +    L+   N     K         +  ++            ++ 
Sbjct: 557 VLTNIFILQMSHLKEKGINLFKELNSLSSEKFYSKMFAKDISIIAKNQAGLKELFKINSD 616

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297
            L      +P+     I  + +  +     L+S  + K LF++ +++   +     +   
Sbjct: 617 VLTKYYFANPKMFWEDIKRSKNLLIG-SGGLNSPLIDKLLFSTQEDVLNEIDK--YDYIE 673

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-----TNLRDRFKAIYNKPYTSS 352
              P      +  K   ++  I  ++ ++      +          +            +
Sbjct: 674 IPSPNNFSHFWTTKFSDQQIKIQLQKLIKWAKEKNKIIVAIGEPRYNEKWQKIIHEIYIN 733

Query: 353 SQDVDSQLYDGFFADV--DRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
           S  +++ L+  F      D    ++I +T  E     +  +     PEL          +
Sbjct: 734 STGIENSLHPLFIIKKDMDTFYPEQIYKTTNEMKQEFSFLYD----PELIEEIVV--KSN 787

Query: 411 TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
            +S + ++  ++  K  L   + ++   KL+ L  E    +  + L   + + ++ 
Sbjct: 788 LISSQIEK--IQVIKDKLYTPKFDDSHIKLKKLVYENAWKKYGKNLPEIIEQRIEK 841


>gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L]
 gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
          Length = 315

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 105/344 (30%), Gaps = 40/344 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGI
Sbjct: 9   NYVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGI 64

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +      +E E       F    +T +I  +N  FD  + ++               
Sbjct: 65  TNYRVSDAPTIE-EVLPVFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP----- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D + + +                  A + KL+ L    GI    +H+A  D   
Sbjct: 116 -KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCIT 160

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
             A+       + +    L    NK  L + +  + +  ++  +           + + +
Sbjct: 161 CAAVYQKCASIEEEAKRKL----NKEALDETVVYEAVKEILVRNKRDIEWIRCMNVGSYL 216

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
               +    V+   + G  +           K + TS           +K    N   +L
Sbjct: 217 --DIKAFYPVMRLKVKGRKKYVLTDILEDDVKEICTSLA-----CEPALKSEVGNTRIML 269

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
             ++   K         +   L+ L   +Q     D     Y  
Sbjct: 270 NSLEDVLKL-ESYILEQYDFVLQALRDYKQSEMNADEKLKEYLN 312


>gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 1216

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   +   +   V++ +    ++                     IT IT
Sbjct: 422 FVVFDIETTGLNSHTNEIIEIGAVKI-KSGRIMDRYSQL---INPGRPIPYHITEITSIT 477

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +  ++    + I +F       ++  +N  FD  + +    +     Y+ S   
Sbjct: 478 DEQVANEPKID----KVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS--- 530

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D ++      PD  +          + L DL    G+     H A  D  AT
Sbjct: 531 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 574

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             +  +  EK  +         N
Sbjct: 575 ANMFIIFLEKYKEKGLEYMKDIN 597


>gi|308174031|ref|YP_003920736.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606895|emb|CBI43266.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552843|gb|AEB23335.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus amyloliquefaciens TA208]
 gi|328912360|gb|AEB63956.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           LL3]
          Length = 928

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 80/277 (28%), Gaps = 28/277 (10%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              FV+ D ET G      D+  Q A V +    +  E    +      +    P    +
Sbjct: 3   KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNQDIPPFIEQL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+      + +     +  I       +      +NI FD  + R+      Y+    
Sbjct: 59  TGISTGMVENE-LPFEAVAEEIFHLL---DGAYFVAHNIHFDLGFVRHELSEAGYE---- 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +++ R ++                  +KL +L     I H   H A +D
Sbjct: 111 --LTDCEVLDTVELSRIVFPGFEG-------------YKLGELCAELNIVHDRPHRADSD 155

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
              T  +   I  K   L         +     + D+  +           A  S     
Sbjct: 156 AEVTGLIFLDILHKLKHLPLPTLKQLRRLSQHFISDLTLLLDSFIHENRPAAEESCIPYA 215

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL 277
           +     P    +    + + D+  + +     L+  +
Sbjct: 216 SFSIKEPEQIPASRPVSAAIDLEKWNEEKERLLSDII 252


>gi|237804887|ref|YP_002889041.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273187|emb|CAX10100.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 250

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 25/193 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G DV  DR  +FA +R     E I+S E        +     E+  I  I+
Sbjct: 9   FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EIIDSVEFL---IHPERAVSAESQKIHKIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E   RI  FF   +   I  +++ FD         R            
Sbjct: 65  DAMLRDKPK-FGEVFSRIKGFFKERD--HIVGHHVGFDLQVLSQESERLG---------- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   + +   + +  D ++       + +  L+ LA    + H   H A  DV   
Sbjct: 112 --------ETLLPKHHYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMN 163

Query: 185 LALVWLIREKKPK 197
           + +   + ++   
Sbjct: 164 VKVFKHLTKRFRT 176


>gi|229029323|ref|ZP_04185411.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1271]
 gi|228731982|gb|EEL82876.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1271]
          Length = 934

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPL-FQDVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEV 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|332306380|ref|YP_004434231.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173709|gb|AEE22963.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 788

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 28/190 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G      R  +   V+V      ++S          +         +TGI+
Sbjct: 623 YVVVDVETTGGCKPGHRITEIGAVKV-INGRVVDSWSSL---INPERRVPHFITRLTGIS 678

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   E    +  F      CI   +N+ FD  + +  + R            
Sbjct: 679 NDMVEEAPL-FCEVIDDLECFMQD---CIFVAHNVNFDYGFFKLEYARLER--------- 725

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +     L  +R +  +            G+ S+ L +L    G+   N H A  D  A 
Sbjct: 726 -SFSMPKLCTVREMRKYY----------PGSKSYSLGNLTKEYGLSLDNHHRALCDAQAA 774

Query: 185 LALVWLIREK 194
             L+ ++ EK
Sbjct: 775 AELLIMVNEK 784


>gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp.
           ART55/1]
          Length = 1603

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 60/190 (31%), Gaps = 28/190 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     ++  +   V+V +  E +++   F            +   +T I 
Sbjct: 547 YVVFDIETTGLSKKHNKIIEIGAVKV-KDGEVVDTFSEF---INPGVPIPYQIEQLTSIN 602

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   +    + +F       I+  +N  FD  + R                 
Sbjct: 603 DDMVKDAPM--FDVI--VPRFVEFCGDDIVVAHNASFDTGFVRMNAEELGLKFDNT---- 654

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +LD M   +   P+  +          F L  +     + + + H A  D  AT
Sbjct: 655 ------VLDTMTLSHILLPELGK----------FTLDRVCKELKVVNAHHHRAIDDAEAT 698

Query: 185 LALVWLIREK 194
             + + + + 
Sbjct: 699 AKVFFKLLDM 708


>gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
 gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
          Length = 463

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 69/221 (31%), Gaps = 35/221 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     D+  + A  + D +   ++S          +         ITGIT
Sbjct: 2   YTIIDVETTGLRPTDDKITEIAIYKHDGE-SVVDSFHSL---VNPECYISDRITQITGIT 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E ++ I          +   +N  FD  + R  F    Y   R +   
Sbjct: 58  NDMVANAPK-FYEIAKDILAITE---GTVFVAHNAHFDYGFVREEFKALGYKFTRKT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L  L     I+  N H A AD  AT
Sbjct: 111 -------LCTVRVSRKVF----------PGLPSYSLAKLCKHFKIQLTNHHRASADALAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
           + +   + EK             KN +   I  +N+ P ++
Sbjct: 154 VEVFEKLLEKNSSK-------LTKNVVETEIKAKNLPPKIN 187


>gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
 gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
          Length = 1390

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 82/276 (29%), Gaps = 31/276 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G D   D   +   V + R  E  E+ + F    +       E V +T IT 
Sbjct: 370 VCFDIETTGLDNRRDVIIEIGAVIL-RNGEIAETFDTF---VSPGRPLSREIVELTSITD 425

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +        E      I  F        +  +N  FD  +      R      + S    
Sbjct: 426 KMLEGAPSQE----EAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTS---- 477

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 +D +       PD  +          +KL  +A    +     H A AD     
Sbjct: 478 ------IDTLILAQNLLPDLGK----------YKLDIVAEHLRLPPFKHHRADADAGMVA 521

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLID---IQNMTPLVHVSGMFGASRSNTALIAP 242
            ++    +    L  +     N    R  +     +    L+ ++      R+   LI+ 
Sbjct: 522 YMLVPFFKMLEDLGIHTLQSINPEMTRLRVKGKARRQPKHLIVLAKNNMGLRNLYTLISK 581

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF 278
                  +  ++  +L    R    L S   A  LF
Sbjct: 582 AHLEHFKRYPIMPKSLINQYREGLILGSACEAGELF 617


>gi|329942403|ref|ZP_08291213.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|332287044|ref|YP_004421945.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|313847640|emb|CBY16628.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci
           RD1]
 gi|325507354|gb|ADZ18992.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|328815313|gb|EGF85301.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|328914277|gb|AEB55110.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
          Length = 249

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 57/187 (30%), Gaps = 26/187 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D E  G DV  DR  +FA +R       I+S E        D +   E+  I  I+
Sbjct: 9   FVCLDCEMTGLDVKKDRIIEFAAIRFTFD-RVIDSMETL---INPDRVISAESQRIHHIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    + AE   +I  F    +   I  +++ FD         R         +  
Sbjct: 65  DAMLKDQPRI-AEVFPKIKSFLKEGD--YIVGHSVGFDLQVLSQEAERIGESFLSKYYVI 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R                          + +  L+ LA+   + +   H A  DV   
Sbjct: 122 DTLRL-------------------AKEYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEIN 162

Query: 185 LALVWLI 191
           +++    
Sbjct: 163 ISIFKHF 169


>gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579]
 gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
          Length = 315

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 104/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  AT+ KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHATNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L +    + +  ++  +           + + + 
Sbjct: 162 AAVYQKCAAIEEEGKRKV----NKAMLDETAVYEAVKEILACNKRNVEWLRCMNVGSYL- 216

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +        +  K + TS           +K    N   +L 
Sbjct: 217 -DIKAFYPVMRVKVKGRKKYVLTEILEEDVKEICTSLK-----CEPALKSEVGNTRIMLN 270

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++             +   L+ L   ++     D     Y  
Sbjct: 271 SLEDVM-RLESYILEQYDFVLQALHDYKENEMNADEKLKEYLN 312


>gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42]
 gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42]
          Length = 240

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 62/201 (30%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +  G+ +   +    +T   +  P  D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLDNRADRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         A  +  I  FF          +N  FD  +    F R             
Sbjct: 62  EFLKDK-KPFAAVADEILAFFGDGK---WIAHNATFDMGFINAEFARIGLPPIL-----P 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
           +   D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 113 DKVIDTLSMARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158

Query: 184 TLALVWLIREKKPKLFEYLYD 204
              +   +   +   F     
Sbjct: 159 LAEVYIEMIGGRQAAFGLSIS 179


>gi|326790794|ref|YP_004308615.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326541558|gb|ADZ83417.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 237

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 69/214 (32%), Gaps = 28/214 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N +V+ D ET G         +   V +  + +  +             +     + IT
Sbjct: 1   MNKYVVVDIETTGAHPVQSEIIEIGAVYI-EEGQVKKIFNEL---VRPTQIISDYIISIT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +       +E E   R   F       +IG+N I FD    +       +      
Sbjct: 57  GITNEMVADAPPIE-EVMPRFIDFCEDVP--LIGHNIILFDYRMLKTKATALGF------ 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L + R + A                S KL DL     I   NAH A  D 
Sbjct: 108 -TFEKMGVDTLVISRKMLA-------------HLPSRKLGDLCEHYAISLENAHRAYHDA 153

Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKNQLRKL 214
           +AT  L   L  E + K  +     R K ++ K+
Sbjct: 154 FATYELFEKLRNEFEKKEAKLFLPERMKWEVPKI 187


>gi|124005083|ref|ZP_01689925.1| exonuclease [Microscilla marina ATCC 23134]
 gi|123989335|gb|EAY28896.1| exonuclease [Microscilla marina ATCC 23134]
          Length = 245

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 63/206 (30%), Gaps = 27/206 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V +D ET G D   DR  Q A +++     K+E                PE   + 
Sbjct: 4   KKPIVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEK----ERLINPTIPIPPEVTKVH 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ +          + ++ + +F       + GYN++ FD       F R         
Sbjct: 60  GVSDEMVKDAP-TFHQVAKSLFEFIR--GCDLAGYNHLNFDMPLLIEEFARAGV------ 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     +DVM+  Y F                       L    E  NAH+A AD 
Sbjct: 111 -VFPEPDVQYIDVMKVYYHFH-------------PRTLSAAYQLYCHKELENAHNAMADT 156

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN 207
            ATL +              + +  N
Sbjct: 157 QATLEIFESQLATHFDEEPSINEIHN 182


>gi|146308744|ref|YP_001189209.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
 gi|145576945|gb|ABP86477.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
          Length = 199

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 51/192 (26%), Gaps = 29/192 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                + D+ET G   +  R  +   V +      ++  +             P    +T
Sbjct: 1   MESIAVIDFETTGVSPSQARATEIG-VAIIEDGRIVDRYQSLM---NSGAWVPPFIEQLT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+     +    E +    +  F        +  +N  FD  +      R         
Sbjct: 57  GISNAMLRKAPPSE-QVMNEVADFI---GERPLLAHNASFDQKFWDAELARVRR------ 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                         R    F+   +        A S KL +L    G  +   AH A AD
Sbjct: 107 --------------RRSQPFACSLLLSRRLLPEAPSHKLGNLNAWAGLPDTGRAHRALAD 152

Query: 181 VYATLALVWLIR 192
                 L   + 
Sbjct: 153 AEMAANLTLHLF 164


>gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396383|gb|AAS04247.1| hypothetical protein MAP_1930 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 643

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 28/207 (13%)

Query: 4   HFVIYDYETFGR------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            FV+ D ET G       + A D   +   V+V R    +                 P+ 
Sbjct: 39  TFVVVDLETTGGRSTSTEETAPDAITEIGAVKV-RGGVVLGEFATL---VDPQRSIPPQI 94

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + +TGIT         ++A       +F  +    ++  +N  FD  + R    +     
Sbjct: 95  MRLTGITTAMVSDAPAIDA-VLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDI-- 151

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R  +L  +R                + A S +L  LA    +     H A
Sbjct: 152 -------AWPRPRVLCTVRLARRVL--------SREEAPSVRLASLARLFAVTTQPTHRA 196

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
             D  AT+ ++  + E+      + Y 
Sbjct: 197 LDDARATVDVLHALIERVGNQGVHTYA 223


>gi|76789273|ref|YP_328359.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
 gi|255311354|ref|ZP_05353924.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
 gi|255317655|ref|ZP_05358901.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
 gi|255348913|ref|ZP_05380920.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
 gi|255503453|ref|ZP_05381843.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
 gi|255507132|ref|ZP_05382771.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
 gi|76167803|gb|AAX50811.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
 gi|289525581|emb|CBJ15059.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
 gi|296435141|gb|ADH17319.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
 gi|296436069|gb|ADH18243.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
 gi|296436997|gb|ADH19167.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
 gi|296437930|gb|ADH20091.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
 gi|296438861|gb|ADH21014.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
 gi|297140430|gb|ADH97188.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
          Length = 250

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 25/193 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G DV  DR  +FA +R     E I+S E        +     E+  I  I+
Sbjct: 9   FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EIIDSVEFL---IHPERAVSAESQKIHKIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E   RI  FF   +   I  +++ FD         R            
Sbjct: 65  DAMLRDKPK-FGEVFSRIKGFFKERD--HIVGHHVGFDLQVLSQESERLG---------- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   + +   + +  D ++       + +  L+ LA    + H   H A  DV   
Sbjct: 112 --------ETLLPKHHYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMN 163

Query: 185 LALVWLIREKKPK 197
           + +   + ++   
Sbjct: 164 VKVFKHLTKRFRT 176


>gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1]
 gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
          Length = 242

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 27/203 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +   V +  ++     T  +F  P       P+A  + GI+ 
Sbjct: 4   IIFDTETTGLDPREDRVIELGCVELANRF-PTGRTLHYFINPQ-GRSVHPDAQAVHGISD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  V  AE      +F    +   +  +N  FD  +    F R         + + 
Sbjct: 62  ADLAGKPV-FAEILDEFLEFI---DGAKLVAHNANFDIGFINAEFQRVGQP-----YIDP 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 113 ARVIDTLAIARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDAEL 158

Query: 184 TLALVWLIREKKPKLFEYLYDYR 206
              +   +   K   F      +
Sbjct: 159 LAEVYIELAGGKQASFGLEIATQ 181


>gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7]
 gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7]
          Length = 224

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 21/203 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62
           +V++D ET G +   DR  +   ++V +    ++                   +   +TG
Sbjct: 41  YVVFDLETTGFNKKEDRIIEIGAIKV-KNGRVVDRFSTLCAPIKGGKPMYISAKITEVTG 99

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     L   + E+E  +    +    +   + +N ++FD  + +    R+  +      
Sbjct: 100 IKNVDLLNQ-IPESEAVKNFMCWLGE-SKISVAHNGLKFDIPFLKEACKRSNVEFKFTH- 156

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   +LD M    A +         +    + K + LA   G+++  AH A  D  
Sbjct: 157 --------ILDTMLLSKALNY------VNNGNIPNNKQETLARYFGVDY-QAHRAVNDCE 201

Query: 183 ATLALVWLIREKKPKLFEYLYDY 205
           A L +   ++     +   L   
Sbjct: 202 ALLKIFDKLKNDAKNINFSLKKI 224


>gi|296333022|ref|ZP_06875479.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674874|ref|YP_003866546.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149873|gb|EFG90765.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413118|gb|ADM38237.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 954

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 85/279 (30%), Gaps = 30/279 (10%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              FV+ D ET G      D+  Q A V +    +  E    +      +         +
Sbjct: 26  KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNKSIPAFIEQL 81

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ Q    +       +  +       +      +NI FD  + +   ++  +     
Sbjct: 82  TGISNQMVEHE-QPFEAVAEEVFHLL---DGAYFVAHNIHFDLGFVKYELHKAGFHLP-- 135

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +++ R ++                  +KL +L+    + H   H A +D
Sbjct: 136 ----DCEVLDTVELSRIVFPGFEG-------------YKLTELSEELQLRHDQPHRADSD 178

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
              T  +   I EK  +L         +     + D+ ++  +                 
Sbjct: 179 AEVTGLIFLEILEKLRQLPYPTLKQLRRLSQHFISDLTHLLDMFIYENRHTEIPGYARFS 238

Query: 241 APVAWHPRYKDSVIGC--NLSGDMRVFQDLDSVQLAKRL 277
           +     P+  D       N S ++  ++  +   L++ +
Sbjct: 239 SFSVREPQSFDEHANEDGNFSFEIENWEAGNEKALSELM 277


>gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 318

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 101/345 (29%), Gaps = 44/345 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +         NK  L +++  + +  ++  +           + + + 
Sbjct: 165 AAVYQKCAAIEEE----RQRKVNKVSLDEIVVYEAVKEMLARNKRNVEWLRCMNVGSYLD 220

Query: 245 WHPRYKDSVIGCNLSGDM--RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
               Y    +              + D  ++   L              +K    N   +
Sbjct: 221 IKAFYPVMRVKVKGRKKYVLTDILEDDVKEICTSLK---------CEQALKSEVGNTRIM 271

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
           L  ++   K         +   L+ L   ++     D     Y  
Sbjct: 272 LNSLEDVMKL-ESYILKQYDFVLQALHDYKENEMNADEKLKEYLN 315


>gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 1435

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/474 (12%), Positives = 125/474 (26%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E +E  + F       +    + + +T IT
Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 473

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        EA   ++   F        +  +N++FD  +      R            
Sbjct: 474 DEMVSAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 523

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                    L  LA    +   + H A  D  AT
Sbjct: 524 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 570

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   K +                  +   P                      
Sbjct: 571 GYLMYKLLDAFKKKYNEDNLNNLNGYAAHGEVYKRARPSHMTVLAKDQKGLKNLYKLVSI 630

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +     S   R+ + L       +       ++       ++        + 
Sbjct: 631 ASTKDFYRIPRTPKSDLARLHEGLLYGSGCWQGDVFVAMMQKGYDEAREKAKFYDFLEVQ 690

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P     +   +    D ++  E ++ + +      +        +     D   +   + 
Sbjct: 691 PPKNYSQLIEDGLIKDEEQLEEIISNIYKLGKELKKPVVATGDAHYVEPHDAIYRTILIS 750

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    +    +   + +++      F   D             N        E  +
Sbjct: 751 AQRSNPNRNKPQPDLHFYSTQEMLN-AFSFLGEDV-----AKEIVIDNSNKI--ADEISE 802

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    I     +L+ L    + E  G+   + + + +   L  +I 
Sbjct: 803 IQ-PIKDGLYPPHIAHADEELKKLTYDKAYELYGNPLPKIVKDRIDLELNSIIS 855


>gi|228932930|ref|ZP_04095795.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826733|gb|EEM72502.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 934

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESMVKQAPL-FQDVAPMVGELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|237802965|ref|YP_002888159.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231274199|emb|CAX10993.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 250

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 25/193 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G DV  DR  +FA +R     E I+S E        +     E+  I  I+
Sbjct: 9   FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EIIDSVEFL---IHPERAVSAESQKIHKIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E   RI  FF   +   I  +++ FD         R            
Sbjct: 65  DAMLRDKPK-FGEVFSRIKGFFKERD--HIVGHHVGFDLQVLSQESERLG---------- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   + +   + +  D ++       + +  L+ LA    + H   H A  DV   
Sbjct: 112 --------ETLLPKHHYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMN 163

Query: 185 LALVWLIREKKPK 197
           + +   + ++   
Sbjct: 164 VKVFKHLTKRFRT 176


>gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 711

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 61/206 (29%), Gaps = 27/206 (13%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV++D ET G   +  D+    AGVR+      + S E F            E++   G
Sbjct: 517 TFVVFDTETTGLHPSQGDQIVSIAGVRI-VNGRIL-SGESFNRIVNPGRSIPAESIRYHG 574

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  +           +   + +     ++  +N  FD  + R               
Sbjct: 575 ITDEMVIDKP-PAGVVLPQFRSYVAD---AVLVAHNAAFDLKFLRMREKEMG-------- 622

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +R         I     D       L D+    GIE  + H A  D  
Sbjct: 623 ------------VRFDSPVLDTMILSNFLDGPEAGHSLDDICERYGIEITDRHTALGDSM 670

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208
            T A++    E       +  D   K
Sbjct: 671 VTAAVLLRQIEALEGRGIHTLDQAVK 696


>gi|329942731|ref|ZP_08291510.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|332287328|ref|YP_004422229.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|313847912|emb|CBY16907.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1]
 gi|325506611|gb|ADZ18249.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
 gi|328814991|gb|EGF84980.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Chlamydophila psittaci Cal10]
 gi|328914571|gb|AEB55404.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
          Length = 228

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 59/231 (25%), Gaps = 30/231 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               + YD ET G  +  DR  + A        +  ES   +      +     EA  I 
Sbjct: 1   MTTLIFYDTETTGTQIDKDRIIEIAAY----NHKTKESFVTY---VNPEIPIPEEASKIH 53

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT    +       E  +    F       ++ +NN  FD         R+        
Sbjct: 54  GITTSTVISAPK-FPEAYKHFCDFCGN-EAVLVAHNNDSFDFPLLEKECRRHALPPL--- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     +D ++    + PD               LQ L    G     AH A  DV
Sbjct: 109 ------SLKTIDSLKWAQKYRPDL----------PKHNLQYLRQVYGFAENQAHRALDDV 152

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMF 230
                +   +               +      +         PL  V   +
Sbjct: 153 ITLHNVFSALIGDLSAEQVLALMEESYHPKTFKMPFGKYKGKPLSEVPPSY 203


>gi|166154751|ref|YP_001654869.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
 gi|166155626|ref|YP_001653881.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336025|ref|ZP_07224269.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
 gi|165930739|emb|CAP04236.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
 gi|165931614|emb|CAP07190.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 250

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 25/193 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G DV  DR  +FA +R     E I+S E        +     E+  I  I+
Sbjct: 9   FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EIIDSVEFL---IHPERAVSAESQKIHKIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E   RI  FF   +   I  +++ FD         R            
Sbjct: 65  DAMLRDKPK-FGEVFSRIKGFFKERD--HIVGHHVGFDLQVLSQESERLG---------- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   + +   + +  D ++       + +  L+ LA    + H   H A  DV   
Sbjct: 112 --------ETLLPKHHYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMN 163

Query: 185 LALVWLIREKKPK 197
           + +   + ++   
Sbjct: 164 VKVFKHLTKRFRT 176


>gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72]
 gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72]
          Length = 734

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 27/186 (14%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + ++D ET G + +  D   Q   VRV    + +  +E F            E+  + G
Sbjct: 543 TYTVFDTETTGLNPSQGDEIIQIGAVRV-LNGKPL-RSEAFEQLIDPCRPLPEESARVHG 600

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT        V+EA      H F    +T ++ +N      +                  
Sbjct: 601 ITADMLAGQPVIEA-VLPSFHAF--AADTVLVAHNAAFDMRFLQLKE------------- 644

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L  +R         +          S +L+ +A   GI  V  H A  D  
Sbjct: 645 --------DLTGLRFDQPVLDTLLLSAVIHPNQDSHRLEAIAERLGITVVGRHTALGDAM 696

Query: 183 ATLALV 188
            T  + 
Sbjct: 697 VTAEVF 702


>gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Exiguobacterium sp. AT1b]
 gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp.
           AT1b]
          Length = 936

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 28/204 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + +VI D ET G  V   D   +FA V V ++ E IE                P    +
Sbjct: 1   MDTYVIVDLETTGHSVKSGDELIEFAAVVV-QEGEVIERYSTL---IRPSRPIPPFITQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T I+ +        E      I   + + +  +   +N+ FD  +      +  Y +++ 
Sbjct: 57  TTISDEDVSDAPTFE----DVIPDIWKMLDGRVFVAHNVAFDLTFLNESLEQAGYLAFQ- 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +++ R +Y                 S  L+ L+    + H +AH A +D
Sbjct: 112 -----GRAIDTVELARILYPTLE-------------SHALEALSDTFDLVHTDAHRALSD 153

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  L   + ++   L      
Sbjct: 154 AEATAELFIRMLDRLRDLPMVTLK 177


>gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS]
 gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS]
 gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 630

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 28/203 (13%)

Query: 4   HFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            FV+ D ET G        D   +   V+V R  E +                 P+ V +
Sbjct: 29  TFVVVDLETTGGRATGERPDAITEIGAVKV-RGGEVLGELATL---VDPGRAIPPQIVSL 84

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT         +E      +  F       ++  +N  FD  + R    +        
Sbjct: 85  TGITTAMVCAAPRIE----SVLPAFLEFARGSVLVAHNAGFDIGFLRAAAEQCAL----- 135

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R  +L  ++                D A S +L  LA     +    H A  D
Sbjct: 136 ----TWPRPPVLCTVKLARRVL--------TRDEAPSVRLSALAQLFRAKTTPTHRALDD 183

Query: 181 VYATLALVWLIREKKPKLFEYLY 203
             AT+ ++  + E+      + Y
Sbjct: 184 ARATVDVLHGLIERIGNQGVHTY 206


>gi|315303836|ref|ZP_07874324.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
 gi|313627797|gb|EFR96442.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
          Length = 928

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 32/246 (13%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   + D R  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASRDDRIIQFAACFV-ESGKRLETYATF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVRDAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMNRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+   G+ H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHRADSD 155

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
              T  L+ L+ EK   L   +     +  +     +++  P +         R+N  L 
Sbjct: 156 AEVTADLLLLLLEKLENLPLPVI----RQMVTVSGSLKSCLPELLFDIEMKKERANKPLD 211

Query: 241 APVAWH 246
                H
Sbjct: 212 TNFIEH 217


>gi|329929369|ref|ZP_08283117.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Paenibacillus sp. HGF5]
 gi|328936456|gb|EGG32901.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Paenibacillus sp. HGF5]
          Length = 246

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 26/184 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V++D ET G +    D    F  +RV    E++   E F           P    +TGIT
Sbjct: 62  VVFDLETTGFNHQHGDEILSFGAIRVI--GEQVIENETFHMIVNSGAPVSPFIAELTGIT 119

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q               +H F +     ++  +    D  +     ++            
Sbjct: 120 QQMVDAAPP----LMEGLHDFMAFIGGRVLVAHAAAHDRGFLNAALWKT----------- 164

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                     +R  +      +           + L +L  ++GI     H A +D   T
Sbjct: 165 --------SKVRLTHRLLDTMMLAQRLYPEQKDYSLDELLRSSGIPVEGRHHALSDARMT 216

Query: 185 LALV 188
             L 
Sbjct: 217 ARLW 220


>gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
 gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
          Length = 1483

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 56/184 (30%), Gaps = 28/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+++D ET G     D   +   V+V    E ++    F                +T I+
Sbjct: 459 FIVFDIETTGFSAKNDAITEIGAVKV-VNGEIVDRFSTF---VNPKRPIPFRIEELTHIS 514

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +   V+E E   +   F        I  +N  FD  + R    R   +        
Sbjct: 515 DAMVVNAPVIE-EILPKFLDF---CEDYTIVAHNAGFDTGFIRENAKRINAEYNP----- 565

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D +       PD  +          FKL  +  A  I     H A  D  AT
Sbjct: 566 -----SIIDTVAMARLLLPDLNR----------FKLDTVCKALNISLEGHHRAVNDAEAT 610

Query: 185 LALV 188
             + 
Sbjct: 611 AEIW 614


>gi|261408383|ref|YP_003244624.1| hypothetical protein GYMC10_4596 [Paenibacillus sp. Y412MC10]
 gi|261284846|gb|ACX66817.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. Y412MC10]
          Length = 246

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 26/184 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V++D ET G +    D    F  +RV    E++   E F           P    +TGIT
Sbjct: 62  VVFDLETTGFNHQHGDEILSFGAIRVI--GEQVIENETFHMIVNSGAPVSPFIAELTGIT 119

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q               +H F +     ++  +    D  +     ++            
Sbjct: 120 QQMVDAAPP----LMEGLHDFMAFIGGRVLVAHAAAHDRGFLNAALWKT----------- 164

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                     +R  +      +           + L +L  ++GI     H A +D   T
Sbjct: 165 --------SKVRLTHRLLDTMMLAQRLYPEQKDYSLDELLRSSGIPVEGRHHALSDARMT 216

Query: 185 LALV 188
             L 
Sbjct: 217 ARLW 220


>gi|228990657|ref|ZP_04150622.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           pseudomycoides DSM 12442]
 gi|228769183|gb|EEM17781.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           pseudomycoides DSM 12442]
          Length = 930

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 65/206 (31%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       DR  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDRITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  + +    +  Y   
Sbjct: 57  ELTGIDENLVKQAPL-FCDVAPMVAELLQ---GAYFVAHNVHFDWNFLKEELKQAGY--- 109

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                 G      +D +                   A S+KL+DLA  + +EH   H A 
Sbjct: 110 ------GEVNCPKIDTVELAQILL----------PTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D   T  L      +  KL      
Sbjct: 154 SDALVTAELFLQFLNQLEKLPLVTLQ 179


>gi|229160592|ref|ZP_04288587.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           R309803]
 gi|228623002|gb|EEK79833.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           R309803]
          Length = 933

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|15618325|ref|NP_224610.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           CWL029]
 gi|15835943|ref|NP_300467.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
 gi|16752629|ref|NP_444893.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
 gi|4376690|gb|AAD18554.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
 gi|8163413|gb|AAF73657.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
           pneumoniae AR39]
 gi|8978782|dbj|BAA98618.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
 gi|269303286|gb|ACZ33386.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 237

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 63/234 (26%), Gaps = 34/234 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
            +  + YD ET G  +  DR  + A      D           F      +     EA  
Sbjct: 6   MDVLIFYDTETTGTQIERDRIIEIAAYNSVTDE---------SFLTYVNPEIPIPDEASK 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GIT    L       E      +F    ++ ++ +NN  FD         R+  +   
Sbjct: 57  IHGITTDAVLSAPK-FPEAYEGFRKFCGE-DSILVAHNNDGFDFPLLGKECRRHSLEPL- 113

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                 N   D L   +                       LQ L    G     AH A  
Sbjct: 114 -----TNRTIDSLKWAQKYR-------------PDLPKHNLQYLRQVYGFAENQAHRALD 155

Query: 180 DVYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKL-IDIQNMTPLVHVSGMFG 231
           DV     +   +    P      L       ++ K+        PLV +   + 
Sbjct: 156 DVVILHKVFTSLIGDLPPQQVLDLLQQSYHPKVFKMPFGKYKGQPLVDIPKSYF 209


>gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1]
          Length = 403

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 54/201 (26%), Gaps = 25/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G     D   +   V V R  E I                  +   +TGI
Sbjct: 24  TFCVVDLETTGGSHRADAITEVGAVSV-RGGESIGELSTL---VDPGTRVPADVTRLTGI 79

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                 +          ++  +N  FD  + R    R+          
Sbjct: 80  TNGMLAGAP-PLGAVLPPVLDLLR---GSVLVAHNAPFDTGFLRAACERHERPWPSPP-- 133

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  +L   R   A  P             S +L  LA   G      H A  D  A
Sbjct: 134 -------VLCTARLARAVLPRSEC--------PSVRLGALAAHFGCRTTPDHRALTDARA 178

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+   L     +
Sbjct: 179 TVEVLHHLLERIGNLGVQSLE 199


>gi|260102980|ref|ZP_05753217.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|260083211|gb|EEW67331.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
 gi|328464560|gb|EGF35931.1| DNA polymerase III [Lactobacillus helveticus MTCC 5463]
          Length = 317

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 25/195 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ + D ET G     DR  +  GV+V R  + ++        P ++ +P      + GI
Sbjct: 32  NYTMLDVETTGLSPFRDRITELGGVKV-RNGQIVDQYTNLVKFPKNNKVP-AFITKLNGI 89

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++   +G+   +  +   +F    +  IIGYN               NF       ++
Sbjct: 90  TEEQLTNEGIPAEQAIKEFREFI--GDDTIIGYNVNFDL----------NFLYDLSQKYN 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +DV+R    + P               +L D     GI  V  H   AD   
Sbjct: 138 LPVLNNDYVDVLRLARVYYPRQHN-----------RLIDCMQRAGIAQVEQHHGLADSLD 186

Query: 184 TLALVWLIREKKPKL 198
           T+ +     +   + 
Sbjct: 187 TIKVYNDFNQHFTED 201


>gi|227514853|ref|ZP_03944902.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum ATCC 14931]
 gi|227086785|gb|EEI22097.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum ATCC 14931]
          Length = 946

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 62/201 (30%), Gaps = 28/201 (13%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G  V    R  Q   V V +  + I   E    K     +       +TGI
Sbjct: 14  YAVVDLETTGTSVKTGSRIIQIGCVLV-QDGQVINEFET---KINPRTVVPLTIEQLTGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                    + E + +  +          I   +N+ FD  +    F R           
Sbjct: 70  KNNDVKGAPLFE-DVAPTLKSLLDD---TIFVAHNVNFDFPFLNAEFERAG------EAP 119

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + + +                  A SF+L+DL     I+H   H A +D  A
Sbjct: 120 LTIPAIDTVTLSQI-------------LMPTAPSFRLRDLTSYLAIDHDQPHSAVSDAVA 166

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+  + ++   L      
Sbjct: 167 TAHLLIELLKRLADLPTITLQ 187


>gi|260587424|ref|ZP_05853337.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|331083705|ref|ZP_08332816.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542291|gb|EEX22860.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|330403916|gb|EGG83468.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 236

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 78/289 (26%), Gaps = 53/289 (18%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V  D ET G + + DR  +   V+V R  E +                      +
Sbjct: 1   MME-YVALDLETTGLEPSKDRIIEIGAVKV-RNKEVVGEYGTL---INPQMEIPDRITEL 55

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+        +     ++ + +         +  +N+ FD  + ++            
Sbjct: 56  TGISNDMVQGKPL----IAQALGELLDFCEELPLLGHNLMFDYSFVKHQAVNAGM----- 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + RA                   S  LQ+L +   I   +AH A  D
Sbjct: 107 --VFEKKGMDTLKLARA-------------LLPELPSRSLQNLRMHYEIPQKDAHRALED 151

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
              T                YL   R + +  +        P + V             +
Sbjct: 152 ARTT----------------YLLYERLREEFEEK------QPKLFVPNALIYKVKKQGPV 189

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289
              A   RY   +I  +          L   + ++ +         +V 
Sbjct: 190 T--AAQKRYLQDLIKYHRIELNVEIDSLTKNEASREIDKILSTYGKIVR 236


>gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
 gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
          Length = 469

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 54/190 (28%), Gaps = 28/190 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   Q   +RV R          F             +  + GI
Sbjct: 276 SYVVFDTETTGLLPHKDEIVQIGALRVVRNRIVAGEQ--FGTLVDPGTPIPAASTKVHGI 333

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +         +  + +R  H+F    +  +I  +N  FD  + R    R      +    
Sbjct: 334 SDAMVQGAPDI-GQAARAFHRF---ASDAVIVAHNAPFDMAFLRRHAKRAGVSWDQ---- 385

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                  +LD +                     S  L  L     +    A  H A  D 
Sbjct: 386 ------PVLDTVLLSAVLFGASQ----------SHTLDALCERLEVTIPPALRHTAMGDA 429

Query: 182 YATLALVWLI 191
            AT  +   +
Sbjct: 430 QATAEVFCKM 439


>gi|114773251|ref|ZP_01450486.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255]
 gi|114546370|gb|EAU49279.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255]
          Length = 313

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 28/193 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V+ D ET G      +  +   V+V    + ++  +                  +T
Sbjct: 139 MQPYVVVDIETTGGRATSHKITEIGMVKV-INGQVVDEYQTL---LNPKRRIPRNITALT 194

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI          + AE +  + QF      C+   +N+ FD  + +  F R         
Sbjct: 195 GIDDVMVSNAP-IFAEVADEVAQFTK---GCVFVAHNVNFDYGFIKQEFTRLER------ 244

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                             A      +      G  S+ L +L    GIE    H A +D 
Sbjct: 245 --------------HFSRAKLCTVREMRKARPGLASYSLANLTRHFGIEMSRHHRAMSDA 290

Query: 182 YATLALVWLIREK 194
            A   L+ +I E 
Sbjct: 291 IAANELLTIINEH 303


>gi|229084648|ref|ZP_04216916.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-44]
 gi|228698671|gb|EEL51388.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-44]
          Length = 930

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F      +    P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQVAAVVV-EDGEILEIFSSF---VNPEREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  + R    +  Y   
Sbjct: 57  ELTGIDEDLVKQAPL-FCDVAPMIVELLQ---GAYFVAHNVHFDWNFLREELKQAGY--- 109

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                 G      +D +                   A S+KL+DLA  + +EH   H A 
Sbjct: 110 ------GEVNCQKIDTVELAQILL----------PTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D   T  L      +  +L      
Sbjct: 154 SDALVTAELFLQFLNQLEQLPLVTLQ 179


>gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 735

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 60/202 (29%), Gaps = 27/202 (13%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + ++D ET G + A  D   Q   VR+      +   E F      +    PE + I G
Sbjct: 544 TYTVFDTETTGMEPAAGDEIIQIGAVRI-VNGRLL-RNENFDQLVDPERFIRPEGIRIHG 601

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+         +E      +H F    N  ++  +N  FD  + +    R          
Sbjct: 602 ISDDMVRGQPNIEV-VLPALHDF---CNDTVLVAHNAAFDMRFLQLKEERTG-------- 649

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +          +          S +L  +A   GI   + H+A  D  
Sbjct: 650 ------------VAFSQPVLDTLLLSGVLHPNQESHQLDSIAERLGIGIEDRHNALGDAC 697

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  +   +     ++      
Sbjct: 698 ATAEVFLKMLPLLAQMGITTLR 719


>gi|241206948|ref|YP_002978044.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860838|gb|ACS58505.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 240

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 66/216 (30%), Gaps = 27/216 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +  G+ +   +    +  +F      D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFIN--PGDQKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          E + +I  FF          +N  FD  +      R             
Sbjct: 62  EFLKDK-QPFGEVAEQILTFFGDAK---WIAHNATFDMGFINAELARIGLPPIL-----P 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 113 ERVLDTLSMARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
              +   +   +          R+    R  + +++
Sbjct: 159 LAEVYIEMIGGRQAALGLGMVGRSNQAARGDMGMED 194


>gi|124265242|ref|YP_001019246.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124258017|gb|ABM93011.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 208

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 63/207 (30%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V V R  + +   +             P    +
Sbjct: 1   METIAVIDFETTGISPGQGARATEIAAVLV-RGGQIVGRYQSLM---NSGAWVPPFIEQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ +   R    E    R +  F +    C +  +N  FD  + +    R   D    
Sbjct: 57  TGISNRMLERAPPAER-VMREVLDFTA---GCPLVAHNAAFDRGFWQAERARAGCDEDA- 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                             +AF+   +        A + +L  LA  +   +   AH A A
Sbjct: 112 -----------------AHAFACTLLLARRLYPEAPNHRLGTLAKLHALPDGGRAHRALA 154

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYR 206
           D      L+  +++     F      R
Sbjct: 155 DAETAAHLLLRMQDDLRVRFAAELAER 181


>gi|226325409|ref|ZP_03800927.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758]
 gi|225206152|gb|EEG88506.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758]
          Length = 231

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 57/204 (27%), Gaps = 28/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V +D ET G D   +   +   ++V R  +  E    F           P    +
Sbjct: 1   MLKSYVCFDLETTGLDPLYNEIIEIGALKV-RDGKVAERFMEF---IHPQEEISPMITNL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +        +A     I  F       ++  +N+ FD  + ++            
Sbjct: 57  TGITNEMVANARPADA----VISDFLEFCEDDVLIGHNVGFDYSFMKSGASNLGL----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D   + +      P                   L     IE+  AH A  D
Sbjct: 108 --TFEKFGIDTFKIAQRTLKSLPSKSL-------------SSLCEYYQIENKAAHRAYYD 152

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  L   +          L+ 
Sbjct: 153 ALATAKLYQTLAHYFENEDPSLFK 176


>gi|228996755|ref|ZP_04156392.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock3-17]
 gi|228763074|gb|EEM11984.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock3-17]
          Length = 930

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 65/206 (31%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       DR  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDRITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  + +            +N+ FD  + +    +  Y   
Sbjct: 57  ELTGIDENLVKQAPL-FCDVAPMVAELLQ---GAYFIAHNVHFDWNFLKEELKQAGY--- 109

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                 G      +D +                   A S+KL+DLA  + +EH   H A 
Sbjct: 110 ------GEVNCPKIDTVELAQILL----------PTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D   T  L      +  KL      
Sbjct: 154 SDALVTAELFLQFLNQLEKLPLVTLQ 179


>gi|194333813|ref|YP_002015673.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM
           271]
 gi|194311631|gb|ACF46026.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM
           271]
          Length = 208

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           + +  V+ D+ET G      DR  +   V V  +   ++  +         +        
Sbjct: 6   LADSVVVLDFETTGLSPQYGDRAIEIGAVLV-EEGRIVDRFQKLM---NPGFRISSFIEA 61

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            TGIT +    +   E E   +  +F +  N   I  +N  FD  +      R       
Sbjct: 62  YTGITNEMLKGEACCE-EVMAQFSEFIAGHN---IVAHNASFDKRFLDFELKRANRS--- 114

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAK 178
                                     +        + + KLQ L    G+    + H A 
Sbjct: 115 -----------------YEGVCCCSLLVSRRIYQDSPNHKLQTLVSHAGVPTIGSFHRAL 157

Query: 179 ADVYATLALVWLIREKKPKLF 199
           AD   T  L   + ++  K +
Sbjct: 158 ADAEMTAHLWLAMIDRIRKQY 178


>gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
 gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
          Length = 1623

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 54/190 (28%), Gaps = 28/190 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     ++  +   V+V +  E +++   F            +   +T I 
Sbjct: 567 YVVFDIETTGLSKKHNKIIEIGAVKV-KDGEVVDTFSEF---INPGVPIPYQIEQLTSIN 622

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   +    + +F       I+  +N  FD  + +                 
Sbjct: 623 DDMVKDAPM--YDVI--VPRFVEFCGDDIVVAHNASFDTGFVKKNAEELG---------- 668

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                     +R                     F L  +     + + + H A  D  AT
Sbjct: 669 ----------LRFDNTVLDTMTLSHILLPELGKFTLDRVCKELKVVNAHHHRAIDDAEAT 718

Query: 185 LALVWLIREK 194
             + + + + 
Sbjct: 719 SKVFFKLLDM 728


>gi|86130357|ref|ZP_01048957.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
 gi|85819032|gb|EAQ40191.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
          Length = 466

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 72/208 (34%), Gaps = 30/208 (14%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G+ +  +R  +F  VR+ +  E I+           +    P    +TGI   
Sbjct: 11  IIDVETTGKGINGNRITEFCAVRL-KDGEIIDKFTSL---VNPEQYIPPFITNLTGIDDA 66

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 + E E ++R+ +        I   +N+ FD    +  F R      R       
Sbjct: 67  MVEDAPLFE-EIAQRVLEITE---GAIFVAHNVNFDFNVIKGEFKRLGVSFVRKK----- 117

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  +R      P+            S+ L +L  + GI   N H A+ D  AT+ 
Sbjct: 118 -----LCTVRLSRKLIPNLF----------SYSLGNLCASIGIPLNNRHRAEGDTDATVI 162

Query: 187 LVWLIREKKP--KLFEYLYDYRNKNQLR 212
           L   + +     K+     + R+K    
Sbjct: 163 LFKRLLDLDEGKKVMNAFLNVRSKEATL 190


>gi|309812650|ref|ZP_07706394.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185]
 gi|308433345|gb|EFP57233.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185]
          Length = 608

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 55/188 (29%), Gaps = 24/188 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FVI D ET G         +   V+V R  E +                 P+   +TGI
Sbjct: 27  TFVIVDLETAGGRPGAQGITEIGAVKV-RGGEVLGEFATL---VDPGCAIPPQIQRLTGI 82

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           A       +F       ++  +N  FD  +                  
Sbjct: 83  TTAMVHNAPK-LASVLPAFFEFL--GPDAVLVAHNAPFDVGFLTAAARDLEVPWPA---- 135

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D + + RA+              D   + +L  LA   G      H A AD  A
Sbjct: 136 --PAVVDTVKLARALVP-----------RDEVRNHRLGTLAAHFGASVNPNHRALADAQA 182

Query: 184 TLALVWLI 191
           T+ ++  +
Sbjct: 183 TVDVLHAL 190


>gi|229043387|ref|ZP_04191104.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH676]
 gi|228725968|gb|EEL77208.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH676]
          Length = 934

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVEMAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|160915589|ref|ZP_02077800.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
 gi|158432709|gb|EDP10998.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
          Length = 1447

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 76/489 (15%), Positives = 142/489 (29%), Gaps = 64/489 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   +F G  V +    I+S ++F              V +TGI
Sbjct: 398 TYCVFDLETTGLSSRFDHIIEFGGQIV-KDRTCIKSLQLF---IKPPVPIPAHIVELTGI 453

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +         AE + +I  F       I+  +N  FD  +  +   R           
Sbjct: 454 SEEHVRNA-KSFAECADQILDFI---GDSILVAHNADFDYNFLNSELVRIGRKPL----- 504

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D LD+ R++                   ++L  +A + GI +    AH A  D 
Sbjct: 505 -DNPVIDTLDLARSMQ--------------DRKGYRLGQIARSYGIRYDEDVAHRADYDA 549

Query: 182 YATL-----------ALVWLIREKKPKLFEYLYDYRNK------NQLRKLIDIQNMTPLV 224
                           +  L   +  +        R K           L ++  +  L 
Sbjct: 550 EVLANTYMNMLNDLKHIQNLAALQDMQNARSFTKVRAKHVTILVKNAAGLKELFELVTLS 609

Query: 225 HVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL 284
           H   +  + +S   ++A     PR     I             + S  L   +F      
Sbjct: 610 HTKYLSYSDKSTGNIVA----EPRILREEIEKRRRNG---NLLIGSSCLNGEVFDIAQTR 662

Query: 285 KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKA 343
                  +K +       L P+   +            R  E L  +         R  A
Sbjct: 663 GEEE--LLKVMQFYDYIELQPLGNYRHLVERDSIESMDRLKEILRSIVEAAKKCGKRIIA 720

Query: 344 IYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLST---LNLPFSDRRLPELF 400
             +  Y   ++ +   +Y    A    +    I      +       +L  +   L E  
Sbjct: 721 SGDVHYAHPNEKMIRDIYISSQAIGGIRHPLYIYNQEKRRKFKSPDQHLLTTKEMLKEFA 780

Query: 401 FRYRARNFPHTLSE----KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGL 456
           +      + + ++      +  + ++  K  L    IE    KL  +  E    +    L
Sbjct: 781 WLGEKEAYTYVVTNTNAIADMIEVVKPVKDRLYPPDIEGSDQKLIDICYENAHKKYGPNL 840

Query: 457 INALYEYLQ 465
            + + E L+
Sbjct: 841 PDIVEERLK 849


>gi|78224248|ref|YP_385995.1| DNA polymerase III subunit epsilon [Geobacter metallireducens
           GS-15]
 gi|78195503|gb|ABB33270.1| DNA polymerase III, epsilon subunit [Geobacter metallireducens
           GS-15]
          Length = 218

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 57/203 (28%), Gaps = 32/203 (15%)

Query: 2   TNHF--VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
              F  VI D+ET G      DR  +   V V      ++  +                 
Sbjct: 1   MGKFTAVILDFETTGLSPGYGDRAIEIGAVLVRNN-RIVDRFQSLM---NPGKRVSGFIE 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
             TGIT +   +    E +   R   F +  N   +  +N  FD  +      R      
Sbjct: 57  EYTGITNEMLAKAPPAE-QVMERFASFIAGHN---LVAHNASFDRRFLDAELSRIGR--- 109

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDA 177
                      D    M A      +          A + +L+ L     ++     H A
Sbjct: 110 -------RRTGDFACSMLAARRIYTN----------APNHRLETLVSHLSLQTDGVFHRA 152

Query: 178 KADVYATLALVWLIREKKPKLFE 200
            AD   T  L   +  +  + + 
Sbjct: 153 LADAEMTAQLWTAMIGELKETYR 175


>gi|228938753|ref|ZP_04101356.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228971635|ref|ZP_04132257.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978244|ref|ZP_04138621.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis Bt407]
 gi|228781261|gb|EEM29462.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis Bt407]
 gi|228788048|gb|EEM36005.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228820928|gb|EEM66950.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326939259|gb|AEA15155.1| ATP-dependent helicase DinG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 934

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|82523686|emb|CAI78468.1| Rad3-related DNA helicases [uncultured candidate division WS3
           bacterium]
          Length = 965

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 59/202 (29%), Gaps = 26/202 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D ET G D  +DR  +   VRV       ++ E F            + V +T
Sbjct: 25  PRTFVGLDLETTGVDSRVDRIIEVGAVRV-VDGRVADTFESF---VNPGCPIPSDIVHLT 80

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+         ++ E   RI +F     + I+ ++      +       R         
Sbjct: 81  GISDADVAGAPTID-EVLPRIIEFI--GGSPIVAHHAPFDTGFLDEAAGGRPGL------ 131

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R  + D +    A                + +L   A    I    +H A  D 
Sbjct: 132 ---LVGRGGVFDTLPLTRALL----------PRLPNHRLATAARFFDIPTGRSHRATDDA 178

Query: 182 YATLALVWLIREKKPKLFEYLY 203
            A   L   +     ++   + 
Sbjct: 179 RAVSDLFLALLGVLDQIGATVL 200


>gi|311068754|ref|YP_003973677.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus atrophaeus 1942]
 gi|310869271|gb|ADP32746.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus atrophaeus 1942]
          Length = 930

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 71/248 (28%), Gaps = 28/248 (11%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              FV+ D ET G      D+  Q A V +    +  E    +      +         +
Sbjct: 3   KQRFVVIDVETTGNSPKKGDKIIQIAAVVI-ENGQITERFSKY---INPNKSIPFFIEQL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT      +       +  + Q     +      +NI FD  + +       +     
Sbjct: 59  TGITNSMVENE-QPFEAVAEEVFQLL---DGAYFVAHNIHFDLGFVKYELNEAGFRLP-- 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +++ R +Y                  +KL +L+    ++H N H A +D
Sbjct: 113 ----DCEVLDTVELSRIVYPGFEG-------------YKLTELSEELQLKHENPHRADSD 155

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
              T  +   I +K  +L         +     + D+  +            +       
Sbjct: 156 AEVTGFIFLKIIDKLQRLPLPTLKQLRRLSQHFISDLTFLLDTFIFEREKAEAPGYVKFA 215

Query: 241 APVAWHPR 248
           +     P 
Sbjct: 216 SFSIREPE 223


>gi|193212860|ref|YP_001998813.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327]
 gi|193086337|gb|ACF11613.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB
           8327]
          Length = 208

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 59/199 (29%), Gaps = 30/199 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  V+ D+ET G      DR  +   V +      ++  +         +   P     T
Sbjct: 7   DSVVVLDFETTGLSPQYGDRAIEIGAVLL-ENGVIVDRFQRLM---NPGFRISPFIESYT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +    +   E E       F +  N   I  +N  FD  +      R         
Sbjct: 63  GITNEMLKVEPPCE-EVMAGFSDFIAGHN---IVAHNASFDRRFLDFELKRARR------ 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180
                   D    +        D          A + KLQ L    GI    + H A AD
Sbjct: 113 ----AYEGDCCCSLLLSRRIYQD----------APNHKLQTLVNHAGIPKVGSFHRALAD 158

Query: 181 VYATLALVWLIREKKPKLF 199
              T  L   + ++  + +
Sbjct: 159 AEMTAHLWLSMIDRIRQHY 177


>gi|161986630|ref|YP_445565.2| hypothetical protein SRU_1441 [Salinibacter ruber DSM 13855]
          Length = 563

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 53/191 (27%), Gaps = 27/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     DR  +   V+V R    ++  +                  +TGI
Sbjct: 7   TFVVTDLETTGTTPDDDRIMEIGAVKV-RDGSVVDRFQQL---VNPQQSVPGRITKMTGI 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E       F       I+  +N+ FD  +      R   ++      
Sbjct: 63  TTGMVFEAP-PADEVLPDYRAFLGDG---ILVAHNVSFDGSFLDAELQRMGDETLPNE-- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L  +R      P             S  L  LA    I+    H A  D  A
Sbjct: 117 -------TLCTVRLARRLLPGLD----------SKGLSRLAQFYDIDVEGRHRALGDAEA 159

Query: 184 TLALVWLIREK 194
           T  ++     +
Sbjct: 160 TSVVLRRFVSQ 170


>gi|58337906|ref|YP_194491.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
 gi|227902927|ref|ZP_04020732.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
 gi|58255223|gb|AAV43460.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
 gi|227869343|gb|EEJ76764.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
          Length = 318

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 24/206 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ + D ET G     DR  +   V+V R  + ++        P ++ +P      + GI
Sbjct: 32  NYTMLDIETTGLSPYRDRITELGAVKV-RNGQIVDQYTNLVKFPKNNKVP-AFITKLNGI 89

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++ + +G+   +      +F    +  I GYN               NF       + 
Sbjct: 90  TEEQIINEGIPAEQAITEFREFI--GDDVIAGYNINFDL----------NFLYDLSQKFK 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +DV+R   A+                 +L D     GI  V  H   AD   
Sbjct: 138 LPILNNDYVDVLRLARAYY----------PRERHNRLIDCMQRAGIAKVEQHHGLADSLD 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209
           T+ +     E            + KN
Sbjct: 188 TIKVYNDFSEHFTDELLENARNKIKN 213


>gi|33241759|ref|NP_876700.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           TW-183]
 gi|33236268|gb|AAP98357.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila
           pneumoniae TW-183]
          Length = 232

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 63/234 (26%), Gaps = 34/234 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
            +  + YD ET G  +  DR  + A      D           F      +     EA  
Sbjct: 1   MDVLIFYDTETTGTQIERDRIIEIAAYNSVTDE---------SFLTYVNPEIPIPDEASK 51

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GIT    L       E      +F    ++ ++ +NN  FD         R+  +   
Sbjct: 52  IHGITTDAVLSAPK-FPEAYEGFRKFCGE-DSILVAHNNDGFDFPLLGKECRRHSLEPL- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                 N   D L   +                       LQ L    G     AH A  
Sbjct: 109 -----TNRTIDSLKWAQKYR-------------PDLPKHNLQYLRQVYGFAENQAHRALD 150

Query: 180 DVYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKL-IDIQNMTPLVHVSGMFG 231
           DV     +   +    P      L       ++ K+        PLV +   + 
Sbjct: 151 DVVILHKVFTSLIGDLPPQQVLDLLQQSYHPKVFKMPFGKYKGQPLVDIPKSYF 204


>gi|228952021|ref|ZP_04114116.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228957917|ref|ZP_04119657.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801833|gb|EEM48710.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228807553|gb|EEM54077.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 934

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|206970727|ref|ZP_03231679.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH1134]
 gi|229078824|ref|ZP_04211377.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock4-2]
 gi|229178049|ref|ZP_04305421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           172560W]
 gi|206734363|gb|EDZ51533.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH1134]
 gi|228605537|gb|EEK62986.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           172560W]
 gi|228704506|gb|EEL56939.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock4-2]
          Length = 934

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|229144240|ref|ZP_04272654.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST24]
 gi|228639248|gb|EEK95664.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST24]
          Length = 934

 Score = 99.5 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|15835437|ref|NP_297196.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270285617|ref|ZP_06195011.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
 gi|270289627|ref|ZP_06195929.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
 gi|301337013|ref|ZP_07225215.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
 gi|8163328|gb|AAF73606.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
           Nigg]
          Length = 250

 Score = 99.5 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 62/193 (32%), Gaps = 25/193 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G DV  DR  +FA +R     E I+S E        +     E+  I  I+
Sbjct: 9   FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EVIDSVEFL---IHPERAVSAESQKIHKIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      +E    I  FF   +   I  +++ FD         R            
Sbjct: 65  DAMLKDKPK-FSEVFSTIKGFFKERD--YIVGHHVGFDLQVLSQESERLG---------- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   + +     +  D ++       + +  L+ LA    + H   H A  DV   
Sbjct: 112 --------ETLLPKQHYVIDTLRLAKEYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMN 163

Query: 185 LALVWLIREKKPK 197
           + +   + ++   
Sbjct: 164 VKVFKHLTKRFRT 176


>gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 240

 Score = 99.5 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 27/216 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +  G+ +   +    +  +F      D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFIN--PGDQKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         AE + +I  FF          +N  FD  +    F R             
Sbjct: 62  EFLKDK-QPFAEVAEQILTFFGDAK---WIAHNATFDMGFINAEFARIGLPPIL-----P 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 113 ERVLDTLSMARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
              +   +   +          ++    R  + +++
Sbjct: 159 LAEVYIEMIGGRQAALGLGMVGKSNQAARGEMGMED 194


>gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
 gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 378

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 53/189 (28%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 16  LVFVDLETTGGSPAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQPIPPFIQQLTGIS 70

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A  +  +   F   +  +   +N  FD  + R  F R  +         
Sbjct: 71  DEMVRDAP-SFASLAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               T   L  L   +G+     H A AD    
Sbjct: 122 -----DVLCTVRLSRALF----------PRETRHGLDALIERHGLVPAARHRALADADLL 166

Query: 185 LALVWLIRE 193
           L    L+ +
Sbjct: 167 LQFWRLLHD 175


>gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 719

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 56/183 (30%), Gaps = 25/183 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G DV  DR  Q   VR+     +I+ T VF             A  I G+  
Sbjct: 21  VVLDTETTGLDVRHDRIVQIGAVRM--HGAEIDETAVFEVTVDPGIPIPEVASRIHGLAD 78

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                     A     +  F       ++  ++I FD    R+   R+ +          
Sbjct: 79  ADVAGKPG-LAAVMPDLVAFI---GDAVVVGHSIHFDMAVLRHEAERHGFVWKEPR---- 130

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 LDV         + +             L  LAL  G+     H A  D  AT 
Sbjct: 131 -----ALDVALMAAGLDRELVDT----------SLDSLALGLGVTITGRHTALGDALATA 175

Query: 186 ALV 188
            + 
Sbjct: 176 RVY 178


>gi|229126955|ref|ZP_04255966.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-Cer4]
 gi|228656555|gb|EEL12382.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-Cer4]
          Length = 934

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|218230901|ref|YP_002366323.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus B4264]
 gi|228907275|ref|ZP_04071134.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 200]
 gi|229069194|ref|ZP_04202485.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           F65185]
 gi|218158858|gb|ACK58850.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus B4264]
 gi|228713946|gb|EEL65830.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           F65185]
 gi|228852329|gb|EEM97124.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 200]
          Length = 934

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|294507448|ref|YP_003571506.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8]
 gi|294343776|emb|CBH24554.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8]
          Length = 563

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 53/191 (27%), Gaps = 27/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     DR  +   V+V R    ++  +                  +TGI
Sbjct: 7   TFVVTDLETTGTTPDDDRIMEIGAVKV-RDGAVVDRFQQL---VNPQQSVPGRITKMTGI 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E       F       I+  +N+ FD  +      R   ++      
Sbjct: 63  TTGMVFEAP-PADEVLPDYRAFLGDG---ILVAHNVSFDGSFLDAELQRMGDETLPNE-- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L  +R      P             S  L  LA    I+    H A  D  A
Sbjct: 117 -------TLCTVRLARRLLPGLD----------SKGLSRLAQFYDIDVEGRHRALGDAEA 159

Query: 184 TLALVWLIREK 194
           T  ++     +
Sbjct: 160 TSVVLRRFVSQ 170


>gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
 gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
          Length = 315

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 83/267 (31%), Gaps = 32/267 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+     E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-HNHELVDQFVSY---VNPERPIPNRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPFFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    +    NK  L + +  + +  ++  +           + + + 
Sbjct: 162 AAVYQNCAAIEEEGKRKV----NKEVLDETVVYEAVREILVRNKRNVEWLRCMNVGSYLD 217

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSV 271
               Y    +         + + L+  
Sbjct: 218 VKAFYPVMRLKVKGRKKYVLTEILEDD 244


>gi|62184729|ref|YP_219514.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
 gi|62147796|emb|CAH63542.1| putative DNA polymerase III epsilon chain [Chlamydophila abortus
           S26/3]
          Length = 249

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 26/187 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D E  G DV  DR  +FA +R       I+S E        D +   E+  I  I+
Sbjct: 9   FVCLDCEMTGLDVKKDRIIEFAAIRFTFD-SVIDSMETL---INPDRVISAESQRIHHIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    + AE   +I  F    +   I  +++ FD         R        ++ +
Sbjct: 65  DAMLKDQPRI-AEVFPKIKSFLKEGD--YIVGHSVGFDLQVLSQEAERIG-----ETFLS 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + +                  + +  L+ LA+   + +   H A  DV   
Sbjct: 117 KYYIIDTLRLAK--------------EYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEIN 162

Query: 185 LALVWLI 191
           +++    
Sbjct: 163 ISIFKHF 169


>gi|296502210|ref|YP_003663910.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171]
 gi|296323262|gb|ADH06190.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171]
          Length = 934

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|229189723|ref|ZP_04316737.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           10876]
 gi|228593772|gb|EEK51577.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           10876]
          Length = 934

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|218896571|ref|YP_002444982.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus G9842]
 gi|218545327|gb|ACK97721.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus G9842]
          Length = 934

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|212638970|ref|YP_002315490.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Anoxybacillus flavithermus WK1]
 gi|212560450|gb|ACJ33505.1| DNA polymerase III, epsilon subunit and Rad3-related DNA helicase
           [Anoxybacillus flavithermus WK1]
          Length = 880

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 28/211 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M + FV+ D ET G      DR  Q   V ++   +  +    F      +         
Sbjct: 1   MNDRFVVVDIETTGNAPKKEDRIIQIGFVVIEGD-KVKKRFSTF---VQPERDIPLFIQQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI               +  + +            +N++FD  + +  F R+      
Sbjct: 57  LTGIDHAMVHDAP-PFQHIAAMLVE---QWEGAYFVAHNVQFDWAFLQEEFIRSGI---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D +++ R                   +S+KL  LA A    H   H A  
Sbjct: 109 --QPPTCRLLDTVELAR-------------FLMPTQSSYKLNHLAEALSFAHDRPHQADY 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
           D  AT  L+  +  K  +L         ++ 
Sbjct: 154 DAEATAQLLLFLLHKLSRLPLVTLKQLRRHS 184


>gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
 gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
          Length = 460

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 111/374 (29%), Gaps = 35/374 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ I D ET G     +   + A  R D + + ++           +    P  V +TGI
Sbjct: 2   NYAILDIETTGGKYNEEGITEIAIYRFDGE-KVVDQFCSL---VNPERPIQPFVVNLTGI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        E ++RI +       CI+  +N +FD+      F R  YD       
Sbjct: 58  NSDMLKNAPK-FYEVAKRIVEITKD---CILVAHNAQFDNRILTTEFDRLGYD------- 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L  +       PD            S+ L  L  + GI   + H A+ D  A
Sbjct: 107 ---FDLETLCTVELSKKLIPDM----------PSYSLGKLVRSLGIPITDRHRAQGDAKA 153

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLR-----KLIDIQNMTPLVHVSGMFGASRSNTA 238
           T+ L  ++  K  +  + +     K   +     KL+D+    P          +  N  
Sbjct: 154 TVTLFKMLLLKDTE--KEIIKAAVKKDPKRQIDTKLLDLIKQAPSETGVYYMHDTHGNIL 211

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
            I       +        +      +   + S+ + K        L+    +   +   N
Sbjct: 212 YIGKSKNIKKRLTQHFTNDNRKSKEMQLKVTSISIEKTGSELLALLEENDQIKRHKPRFN 271

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
           +       +Y      +  G  + +  +     +  T   +   A  N        ++  
Sbjct: 272 RALKRSIFNYQLGSFVDEDGYINLKIEKADARKKAITTFSNYQSAKNNVASYIEKFNLCQ 331

Query: 359 QLYDGFFADVDRQI 372
           +L     +      
Sbjct: 332 RLSGFEKSTGACFN 345


>gi|75760399|ref|ZP_00740443.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492110|gb|EAO55282.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 934

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|320535302|ref|ZP_08035422.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Treponema phagedenis F0421]
 gi|320147834|gb|EFW39330.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Treponema phagedenis F0421]
          Length = 216

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 65/219 (29%), Gaps = 25/219 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F  +D ET G     D   +  G++ D +   I    +             +   +  IT
Sbjct: 15  FTAFDTETTGLKQEEDSVVEIGGIKFDHRG-VIARFNIL---INPGKPMPEDVTAVNNIT 70

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                              +F       ++  +N  FD  +  N   R            
Sbjct: 71  DAMLADKP-PFNAVIPDFLRFIKK---TVLVAHNAPFDIGFINNELKRCKKPPL------ 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D L + + ++                  ++LQ+LAL  GI  + AH A+ D    
Sbjct: 121 TNKVIDTLVLAQEVFPGLGKHQ-----------YRLQNLALQFGITALEAHRAEDDSRVC 169

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
           +    +  E   K  E L      N   + I  +   P+
Sbjct: 170 MEFFTIAVEHFFKNNEKLVKQIKANTNIEEILREAPPPV 208


>gi|228900222|ref|ZP_04064453.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 4222]
 gi|228859391|gb|EEN03820.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 4222]
          Length = 934

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|229016898|ref|ZP_04173826.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1273]
 gi|229023104|ref|ZP_04179618.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1272]
 gi|228738250|gb|EEL88732.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1272]
 gi|228744459|gb|EEL94533.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1273]
          Length = 934

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEV 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKVDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFIQFLNEIEKLPLVTLQ 179


>gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 303

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 28/188 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGI
Sbjct: 12  NYVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +      +E E       F       +I  +N  FD  + ++               
Sbjct: 68  TNYRVSDAPTIE-EVLPLFLAFLHKN---VIVAHNASFDMRFLKSNVNMLGLPEP----- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   D + + +                  A + KL+ L    GI    +H+A  D   
Sbjct: 119 -KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCIT 163

Query: 184 TLALVWLI 191
             A+    
Sbjct: 164 CAAVYQKC 171


>gi|317497265|ref|ZP_07955589.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895510|gb|EFV17668.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 235

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 71/212 (33%), Gaps = 28/212 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V +D ET G     D+  +   V++ R  +         C    +       + +T
Sbjct: 1   MKDYVAFDLETTGLSPDSDQIIEIGAVKI-RDGKISGKYN---CIIHPEIEVSDFIINLT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+     + G+   E    + +F        +  +N+ FD  + +            + 
Sbjct: 57  GISRDMLRK-GIPLKE---GVEEFLEFSGDLPVLGHNVMFDYKFMKMAAA-------SFK 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +    +  D L V R                 G  + KL+ L       +  AH A  D 
Sbjct: 106 YPFEKTGVDTLKVAR-------------KLLTGLENKKLETLCAHYHYVNQAAHRAYDDA 152

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            AT  +   ++++ P   E     + + +++K
Sbjct: 153 LATAVVFEQMKKEFPTEEEIFQPQQLQFKVKK 184


>gi|289177416|gb|ADC84662.1| DNA polymerase III, epsilon chain [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 190

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 26/185 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +++  D ET G     DR  +   V+V R  + ++                     +TGI
Sbjct: 12  NYISLDLETTGFSAQNDRITEIGAVKV-RDGKIVDRFTQL---VNPGRRVSARITELTGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      V+E      +  F        +  +N +FD  +      R F D       
Sbjct: 68  SNEMLEDQPVIE----DILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSD------- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +       +D M       P               +L DL    GI  V  H A +D   
Sbjct: 117 STRFSVRPIDTMHIDRLLFPS-----------ERHRLVDLIQRYGIGDVEEHRALSDATQ 165

Query: 184 TLALV 188
           T   +
Sbjct: 166 TYQCL 170


>gi|332667256|ref|YP_004450044.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336070|gb|AEE53171.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 282

 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 63/192 (32%), Gaps = 26/192 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D E  G +V  DR  Q A ++  +        +              EA+ + GI 
Sbjct: 9   LCFFDIEATGLNVVRDRIVQIAIIKYFKDGR---EPQELSLMINPGIPISLEAILVHGIQ 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          + +++I  F    N  + GYN+ RFD       F R   +       +
Sbjct: 66  PKDVANKP-TFQQLAQKIWDFI--GNADLAGYNSNRFDIPMLMEEFARVGMEFDVTKRRS 122

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +DV R  Y                       L      EH +AHDA ADV AT
Sbjct: 123 -------IDVQRIFY-------------KMEPRTLKAALKFYCEKEHEDAHDAMADVRAT 162

Query: 185 LALVWLIREKKP 196
           + +     +K  
Sbjct: 163 IDVFKGQLDKYE 174


>gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
 gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
          Length = 412

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 59/206 (28%), Gaps = 27/206 (13%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV++D ET G   +  D+    AGVR+      + S E F            E++   G
Sbjct: 218 TFVVFDTETTGLHPSQGDQIVSIAGVRI-VNGRIL-SGESFNRIVNPGRPIPAESIRYHG 275

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    +           +   + +     ++  +N  FD  + R               
Sbjct: 276 ITDDMVVDKP-PAGVVLPQFRSYVAD---AVLVAHNAAFDLKFLRMREKDMG-------- 323

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +R         I     D       L D+    GIE  + H A  D  
Sbjct: 324 ------------IRFDIPVLDTMILSNFLDGPDAGHSLDDICDRYGIEITDRHTALGDAM 371

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208
            T A++    E          D   K
Sbjct: 372 VTAAVLLRQIEALEGRGIQTLDQAVK 397


>gi|161507964|ref|YP_001577928.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348953|gb|ABX27627.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 317

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 25/195 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ + D ET G     DR  +  GV+V R  + ++        P ++ +P      + GI
Sbjct: 32  NYTMLDVETTGLSPFRDRITELGGVKV-RNGQIVDQYTNLVKFPKNNKVP-AFITKLNGI 89

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++   +G+   +  +   +F    +  IIGYN               NF       ++
Sbjct: 90  TEEQITNEGIPAEQAIKEFREFI--GDDTIIGYNVNFDL----------NFLYDLSQKYN 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +DV+R    + P               +L D     GI  V  H   AD   
Sbjct: 138 LPVLNNDYVDVLRLARVYYPRQHN-----------RLIDCMQRAGIAQVEQHHGLADSLD 186

Query: 184 TLALVWLIREKKPKL 198
           T+ +     +   + 
Sbjct: 187 TIKVYNDFNQHFTED 201


>gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 1454

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 65/203 (32%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   +   +   V++ +    ++                     IT IT
Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKI-KAGRIVDRYSQL---INPGRPIPYHITEITSIT 482

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +  ++      I +F       ++  +N  FD  + +    +      + S   
Sbjct: 483 DEQVANEPKID----EVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKYLNIDLQSS--- 535

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D ++      PD  +          + L DL    G+     H A  D  AT
Sbjct: 536 ------VIDTLQMARDLFPDLKK----------YGLGDLNKTLGLALEKHHRAVDDSQAT 579

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             +  +  +K  +         N
Sbjct: 580 ANMFIIFLDKYKEKGLEYIKDIN 602


>gi|228920352|ref|ZP_04083698.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228839274|gb|EEM84569.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 934

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|227495535|ref|ZP_03925851.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831082|gb|EEH63465.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 206

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 24/193 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D ET G     D   + A V+  ++ + +E+                    +TGI
Sbjct: 16  TLVSVDIETTGLG-DSDAITELAAVKY-QKGQVVETFSSL---VNPGRQIPVFITRLTGI 70

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q          E      +F   P + ++ +N  RFD  +  N   +         W 
Sbjct: 71  DNQLVADAP-TLREVLPVFLEFCDFPRSVLLAHNA-RFDTRFLMNACAQLGL-----EWQ 123

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              S    +D +    A  P             + +L  LA   GI++ NAH A AD Y 
Sbjct: 124 FPAS----IDTVFFSRALLP--------RPQVQNHRLGTLAHHFGIKNPNAHRALADAYT 171

Query: 184 TLALVWLIREKKP 196
            L L   + +   
Sbjct: 172 CLELYKCLLDVLH 184


>gi|297625374|ref|YP_003687137.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921139|emb|CBL55686.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 203

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 53/201 (26%), Gaps = 28/201 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              + + D ET G   A  DR  +   VR+D Q    +        P         A  +
Sbjct: 1   MAGYAVLDLETTGFSPARGDRIIEIGLVRLDPQGHVDDEWSTL-VNPRRTVR----ATRV 55

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             IT           AE +  +          ++  +N  FD  +               
Sbjct: 56  HHITSADVAAAP-TMAELAPGLVDKLRDR---VVVAHNSSFDVGFLTAELRTAGM----- 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +  MR    F             A S +L D   A G+   +AH A  D
Sbjct: 107 --TIPPEPIPSVCTMRQSTRFL-----------HARSRRLVDCCEAAGVSLRDAHSALGD 153

Query: 181 VYATLALVWLIREKKPKLFEY 201
             AT  L             +
Sbjct: 154 ARATAELFGHYLRAAGGELPW 174


>gi|229109097|ref|ZP_04238697.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-15]
 gi|228674375|gb|EEL29619.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-15]
          Length = 934

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQVGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 469

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 54/186 (29%), Gaps = 28/186 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V+ D ET G +  LDR  + A +RV  Q E +                 P    +
Sbjct: 1   MLPCYVLLDLETTGSNPVLDRITEVAVMRV-EQGEVVAKWSRL---LNPGQRIPPFIQQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI             E    +       +  ++  +N+RFD  + +    R   D    
Sbjct: 57  TGIDDAMVAGAPA-FGEVLPELLAVL---DGAVLVAHNVRFDHGFLKQAAAREGVD---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R   L  +R                  A    L  +   +G+     H A  D
Sbjct: 109 ------LRVKTLCTVRLSRKLY----------PQARGHGLDAIMRRHGLHTTARHRAMGD 152

Query: 181 VYATLA 186
           V     
Sbjct: 153 VELLHQ 158


>gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205]
 gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205]
          Length = 585

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 54/188 (28%), Gaps = 24/188 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V       E   V            P    +TGI
Sbjct: 31  TFVVVDLETTGGAPDGGGITEIGAVKVRGG----EQLGVLATLVNPGVPVPPFVTVLTGI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    L      A+      +F S     ++  +N  +D  + +     + +        
Sbjct: 87  TQAMLLPAP-SIAQVLPSFLEFLSAD--AVLVAHNAPYDVGFLKAACAAHGHRWP----- 138

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + R +              D   + +L  LA          H A  D  A
Sbjct: 139 -NPRILDTAALARRV-----------LSRDEVPNRRLGTLAAYFRTSTQPTHRALDDAKA 186

Query: 184 TLALVWLI 191
           T+ ++  +
Sbjct: 187 TVDVLHGL 194


>gi|251796155|ref|YP_003010886.1| hypothetical protein Pjdr2_2143 [Paenibacillus sp. JDR-2]
 gi|247543781|gb|ACT00800.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. JDR-2]
          Length = 244

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 26/188 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            V++D ET G   +  D    F  V +  +  +++ +  F+           + + +TGI
Sbjct: 60  IVVFDLETTGFYPSNGDEIISFGAVHM--KGLELDESRQFYSLVNPKRRIPRQIIELTGI 117

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  + +H F       ++  +    D  +     +R           
Sbjct: 118 TNEMVQDAP----DLMQVLHDFMEFIGRRLLIAHAAGHDKQFLNAALWR------TSKVS 167

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +   D + V +               +    S+ L DL    GI     H A  D   
Sbjct: 168 LNHRVLDTMLVAK-------------WLEPKRASYALDDLLEDCGIPITERHHALQDSLM 214

Query: 184 TLALVWLI 191
           T  L    
Sbjct: 215 TAKLWQQF 222


>gi|150007345|ref|YP_001302088.1| DNA polymerase III subunit epsilon [Parabacteroides distasonis ATCC
           8503]
 gi|255014024|ref|ZP_05286150.1| DNA polymerase III epsilon chain [Bacteroides sp. 2_1_7]
 gi|256839636|ref|ZP_05545145.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13]
 gi|262382080|ref|ZP_06075218.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B]
 gi|298375333|ref|ZP_06985290.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|301310653|ref|ZP_07216592.1| exonuclease [Bacteroides sp. 20_3]
 gi|149935769|gb|ABR42466.1| DNA polymerase III epsilon chain [Parabacteroides distasonis ATCC
           8503]
 gi|256738566|gb|EEU51891.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13]
 gi|262297257|gb|EEY85187.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B]
 gi|298267833|gb|EFI09489.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|300832227|gb|EFK62858.1| exonuclease [Bacteroides sp. 20_3]
          Length = 256

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 67/195 (34%), Gaps = 27/195 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N  V +D ET G ++  DR  + + V+V    ++    E    +        PE+  I G
Sbjct: 7   NPLVFFDLETTGINIVKDRIVEISYVKVFPNGKE----ETKTRRINPGMPIPPESTAIHG 62

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          E ++ +          + GYN+ RFD       F R   D      
Sbjct: 63  ITDEDVKDCP-TFKEIAKSLATQIE--GCDLAGYNSNRFDIPMLAEEFLRAGVD------ 113

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    +D+ R  +           +   + ++K             NAH A+AD  
Sbjct: 114 ---------IDLNRRKFIDVQTIFHKMEQRTLSAAYKF-----YCNKSLENAHTAEADTL 159

Query: 183 ATLALVWLIREKKPK 197
           AT  ++    ++ P 
Sbjct: 160 ATYEVLKAQLDRYPD 174


>gi|146301193|ref|YP_001195784.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146155611|gb|ABQ06465.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 453

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 98/343 (28%), Gaps = 38/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D   E ++           +    P  V +TGI 
Sbjct: 2   YAILDIETTGGQFNEEGITEIAIYKFDGH-EVVDQFISL---VNPEIPIQPFVVKLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E ++RI +  +    C+I  +N  FD    R  F R  YD    +   
Sbjct: 58  NAMLRSAPK-FYEVAKRIIEITTD---CVIVAHNASFDYRILRTEFRRLGYDFEAKT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +                     S+ L  L  A GI   + H A  D  AT
Sbjct: 111 -------LCTVELAKKL----------IPEQPSYSLGKLVRALGIPMADRHRASGDAMAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRK--------LIDIQNMTPLVHVSGMFGASRSN 236
             L  ++ EK  +  + +     K ++ K        +++       V+       +   
Sbjct: 154 TKLFKMLLEKDVE--KTIVKDFIKLEVEKGISPKFLDIVNQMPAKTGVYYIYKEDGTLIY 211

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296
                 +        + I             +   +    L     E + +     +   
Sbjct: 212 IGKSQNIKKRVNQHFTGITTKSKRIQAEVFTITYDETGSELIALLKESQEVKVNRPRYNR 271

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339
             K  +     Y +K+      +  ++       +    +L++
Sbjct: 272 SQKKSVFPVALYAEKDSNGYINLRLEKADGRKKEITSFASLQE 314


>gi|183602347|ref|ZP_02963713.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|241191299|ref|YP_002968693.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196705|ref|YP_002970260.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218266|gb|EDT88911.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|240249691|gb|ACS46631.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251259|gb|ACS48198.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794292|gb|ADG33827.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 188

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 26/185 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +++  D ET G     DR  +   V+V R  + ++                     +TGI
Sbjct: 10  NYISLDLETTGFSAQNDRITEIGAVKV-RDGKIVDRFTQL---VNPGRRVSARITELTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      V+E      +  F        +  +N +FD  +      R F D       
Sbjct: 66  SNEMLEDQPVIE----DILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSD------- 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +       +D M       P               +L DL    GI  V  H A +D   
Sbjct: 115 STRFSVRPIDTMHIDRLLFPS-----------ERHRLVDLIQRYGIGDVEEHRALSDATQ 163

Query: 184 TLALV 188
           T   +
Sbjct: 164 TYQCL 168


>gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
 gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
          Length = 911

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   FVI D ET G      DR  Q     V      ++    FF     +         
Sbjct: 1   MAMRFVIIDLETTGNVPKKGDRIIQLGMAVV-EDGSIVKRFASFF---NPEQPIPLFIQQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I  Q      +  A+ +  I              +N+ FD  + +    R  +  + 
Sbjct: 57  LTNIDEQTVEGAPL-FADKADEITAMME---GAYFVAHNVDFDLPFLQAELERAGWPPF- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D +++ R +                A S+KL DLA   G+ H   H A +
Sbjct: 112 -----TGPTIDTVELARIV-------------LPTAESYKLGDLAKQLGLHHDRPHQADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D   T  L   + E+  +L     +
Sbjct: 154 DAEVTAKLFIALLERLGRLPLVTLE 178


>gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus thermodenitrificans NG80-2]
 gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 911

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   FVI D ET G      DR  Q     V      ++    FF     +         
Sbjct: 1   MAMRFVIIDLETTGNVPKKGDRIIQLGMAVV-EDGSIVKRFASFF---NPEQPIPLFIQQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I  Q      +  A+ +  I              +N+ FD  + +    R  +  + 
Sbjct: 57  LTNIDEQTVEGAPL-FADKADEITAMME---GAYFVAHNVDFDLPFLQAELERAGWPPF- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D +++ R +                A S+KL DLA   G+ H   H A +
Sbjct: 112 -----TGPTIDTVELARIV-------------LPTAESYKLGDLAKQLGLHHDRPHQADS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D   T  L   + E+  +L     +
Sbjct: 154 DAEVTAKLFIALLERLGRLPLVTLE 178


>gi|229149839|ref|ZP_04278067.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1550]
 gi|228633520|gb|EEK90121.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1550]
          Length = 934

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHNQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|289435248|ref|YP_003465120.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171492|emb|CBH28036.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 928

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G      DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYATF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKDAPLFE-DVAPIIAGLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+   G+ H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHQADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035]
 gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035]
          Length = 688

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 51/188 (27%), Gaps = 29/188 (15%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV++D ET G      D   Q AG+R+      +   E F           P +  +  
Sbjct: 493 SFVVFDTETTGLSPRGGDEIVQIAGLRI-VNGRIL-RGESFDMLVNPGRPIPPASTRVHH 550

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+         +  E  RR H F       ++  +N  FD  + R               
Sbjct: 551 ISDDMVQDAPDII-EAGRRFHDF---CQGAVLVAHNAPFDLAFLRLKEKVIGR------- 599

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180
                        R         +      D +    L  L    G  I     H A  D
Sbjct: 600 -------------RFDNPVLCTVLMSAGLFDHSGQHTLDALCERFGITIPPEARHTAMGD 646

Query: 181 VYATLALV 188
             AT  + 
Sbjct: 647 TVATAEVF 654


>gi|157961820|ref|YP_001501854.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC
           700345]
 gi|157846820|gb|ABV87319.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC
           700345]
          Length = 215

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  ++ D+ET G      DR  +   V + +  + ++  +         +         T
Sbjct: 16  DTVIVLDFETTGLSPTQGDRAIEIGAVML-KDGKVVDRFQQLM---NPGFRISGFIESYT 71

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+          E E   +   F    N   +  +N  FD  +      R         
Sbjct: 72  GISNAMLADAPSCE-EVMAQFADFIGDYN---LVAHNASFDQRFLDAELKRINC------ 121

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                           +  F+   +        A + KL  L     I+H    H A AD
Sbjct: 122 --------------HYLGQFACSMLIARRLYQAAPNHKLGSLVSYKNIQHDGVFHRALAD 167

Query: 181 VYATLALVWLIREKKPKLFEYL 202
              T +L   + E   + ++  
Sbjct: 168 SEMTASLWLAMLEDLQQDYQLH 189


>gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
 gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
           DSM 5476]
          Length = 319

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 61/197 (30%), Gaps = 27/197 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G D   D   +   +R+  + E +ES              D   + +TGI+
Sbjct: 22  YVVIDLETTGYDPHRDEIIELGALRI-HEGEVVESFSSLT---KPQRDLDDYIIQLTGIS 77

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E S    ++       I+  +N+ FD          NF          
Sbjct: 78  NEMLASAP----ELSDVFPRYLDFIGDSIVVGHNVHFDV---------NFIYDTCIKESL 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                DL+D++       PD           TS KL  ++    I     H +  D   T
Sbjct: 125 KLFTNDLVDLLWLSRKLLPDL----------TSHKLCRVSSHFNICVEGMHRSLFDCKTT 174

Query: 185 LALVWLIREKKPKLFEY 201
                  R    + +  
Sbjct: 175 FECFEKCRILAKERYGQ 191


>gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al
           Hakam]
 gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
 gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
          Length = 315

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 104/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++          +     
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEPQN---- 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 118 --KVIDTVLLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    L    NK  L + +  + +  ++  +           + + + 
Sbjct: 162 AAVYQKCASIEEEAKRKL----NKKALDETVVYEAVKDILVRNKRDIEWIRCMNVGSYL- 216

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +           K + TS           +K    N   +L 
Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTDILEDDVKEICTSLA-----CEPALKSEVGNTRIMLN 270

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++   K         +   L+ L   +Q     D     Y  
Sbjct: 271 SLEDVLKL-ESYILEQYDFVLQALRDYKQSEMNADEKLKEYLN 312


>gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11]
 gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11]
          Length = 471

 Score = 99.1 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 50/202 (24%), Gaps = 29/202 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F ++D ET G     D   Q   VRV                        P +  + GI
Sbjct: 278 SFTVFDTETTGLMPNKDDIVQIGAVRVVNGRMVPGERIDQLV--NPGRPIPPASSKVHGI 335

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +            E     H+F       +I  +N  FD  + +        +       
Sbjct: 336 SDTMVADAPQPL-EAVADFHEFARES---VIVAHNAPFDLAFLQKYGKVAGLEWP----- 386

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKADV 181
                  +LD +                        L  L     I+      H A  D 
Sbjct: 387 -----HPILDTVLLSAVVF----------GSNEVHTLDALCERLCIDIRPEVRHTALGDA 431

Query: 182 YATLA-LVWLIREKKPKLFEYL 202
            AT   L  L+     K FE  
Sbjct: 432 EATAEALCKLLPILTSKGFETF 453


>gi|227878821|ref|ZP_03996728.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|227861569|gb|EEJ69181.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
          Length = 1436

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/474 (12%), Positives = 128/474 (27%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E +E  + F       +    + + +T IT
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        EA   ++   F        +  +N++FD  +      R            
Sbjct: 475 DEMVGAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  LA    +   + H A  D  AT
Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQSRHTLDSLAKKYNVSLEHHHRANQDAEAT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   K +                  +   P          +           
Sbjct: 572 GYLMFKLLDAFNKKYHENNLNNLNGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSI 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +     S   R+   L       +       ++       ++        + 
Sbjct: 632 ASTKDFFRIPRTPKSDLARLHDGLLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQ 691

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P     +   +    D  +  E +  + +     ++     +  +    +D   +   + 
Sbjct: 692 PPATYSQLIADGLIKDEDQLHEIIENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIA 751

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    +    +   + +++      F   D        +    N        E  +
Sbjct: 752 AQRSNPSRNKPQPDLHFYSTQEMLD-AFSFLGEDV-----AKKIVIDNTNKI--ADELSE 803

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 804 IQ-PIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 856


>gi|62185003|ref|YP_219788.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
 gi|62148070|emb|CAH63824.1| DNA polymerase III, epsilon chain [Chlamydophila abortus S26/3]
          Length = 228

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 61/231 (26%), Gaps = 30/231 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               + YD ET G  +  DR  + A           ES   +      +     EA  I 
Sbjct: 1   MTTLIFYDTETTGTQIDKDRIIEIAAY----NHITKESFVTY---VNPEIPIPEEASKIH 53

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT    +       E  +   +F    +  ++ +NN  FD         R+  +     
Sbjct: 54  GITTSTVISAPK-FPEAYKHFCEFCGN-DAVLVAHNNDSFDFPLMEKECRRHALEPL--- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     +D ++    + PD               LQ L    G     AH A  DV
Sbjct: 109 ------SLKTIDSLKWAQKYRPDL----------PKHNLQYLRQVYGFAENQAHRALDDV 152

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMF 230
                +   +               +      +         PL  V   +
Sbjct: 153 ITLHNVFSALIGDLSAEQVLALMEESYHPKTFKMPFGKYKGKPLSEVPPSY 203


>gi|315648491|ref|ZP_07901590.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453]
 gi|315276185|gb|EFU39531.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453]
          Length = 246

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 51/184 (27%), Gaps = 26/184 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V++D ET G +    D    F  VRV    E++   E F           P    +TGIT
Sbjct: 62  VVFDLETTGFNHQHGDEILSFGAVRVI--GEQVIEQESFHMIVNSGSPVPPFITELTGIT 119

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                            +H F +     ++  +    D  +     ++            
Sbjct: 120 QHMVDAAPP----LMEGLHDFMAFVGGRVLVAHAAAHDRGFLNAALWKT----------- 164

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                     +R  +      +         T + L +L     I     H A +D   T
Sbjct: 165 --------SKVRLTHRLLDTMMLAQRLYPEQTDYSLDELLRNCSIPVEGRHHALSDARMT 216

Query: 185 LALV 188
             L 
Sbjct: 217 ARLW 220


>gi|256849838|ref|ZP_05555269.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|256713327|gb|EEU28317.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 1436

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/474 (12%), Positives = 128/474 (27%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E +E  + F       +    + + +T IT
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        EA   ++   F        +  +N++FD  +      R            
Sbjct: 475 DEMVGAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  LA    +   + H A  D  AT
Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQSRHTLDSLAKKYNVSLEHHHRANQDAEAT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   K +                  +   P          +           
Sbjct: 572 GYLMFKLLDAFNKKYHENNLNNLNGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSI 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +     S   R+   L       +       ++       ++        + 
Sbjct: 632 ASTKDFFRIPRTPKSDLARLHDGLLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQ 691

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P     +   +    D  +  E +  + +     ++     +  +    +D   +   + 
Sbjct: 692 PPATYSQLIADGLIKDEDQLHEIIENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIA 751

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    +    +   + +++      F   D        +    N        E  +
Sbjct: 752 AQRSNPSRNKPQPDLHFYSTQEMLD-AFSFLGEDV-----AKKIVIDNTNKI--ADELSE 803

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 804 IQ-PIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 856


>gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and
           Excinuclease ABC, C subunit [Thiomonas sp. 3As]
          Length = 469

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 54/186 (29%), Gaps = 28/186 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V+ D ET G +  LDR  + A +RV  Q E +                 P    +
Sbjct: 1   MLPCYVLLDLETTGSNPVLDRITEVAVMRV-EQGEVVAKWSRL---VNPGQRIPPFIQQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI             E    +       +  ++  +N+RFD  + +    R   D    
Sbjct: 57  TGIDDAMVAGAPA-FGEVLPELLAAL---DGAVLVAHNVRFDHGFLKQAAAREGVD---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R   L  +R                  A    L  +   +G+     H A  D
Sbjct: 109 ------LRVKTLCTVRLSRKLY----------PQARGHGLDAIMRRHGLHTTARHRAMGD 152

Query: 181 VYATLA 186
           V     
Sbjct: 153 VELLHQ 158


>gi|313632670|gb|EFR99647.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           seeligeri FSL N1-067]
          Length = 928

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYATF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKDAPLFE-DVAPIIAGLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+   G+ H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHQADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|154509184|ref|ZP_02044826.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798818|gb|EDN81238.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
          Length = 550

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 53/188 (28%), Gaps = 25/188 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G     D   +   VR+ R    ++                P    +TGITP
Sbjct: 30  VVVDLETTGLGAGAD-ITEIGAVRI-RDGAVVDEFSSL---VKPSRPIPPFITSLTGITP 84

Query: 66  QKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                     A       ++      ++ ++  +N  FD  + R           R    
Sbjct: 85  AMVADA-APIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPR---- 139

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R                    + KL  +A   G   V  H A  D  A
Sbjct: 140 --VRIVDTLALAR-----------LALPRPLVRNHKLGTVASYFGTATVPEHRALGDARA 186

Query: 184 TLALVWLI 191
           T  ++   
Sbjct: 187 TAEILLGF 194


>gi|34496475|ref|NP_900690.1| DNA-directed DNA polymerase III subunit epsilon [Chromobacterium
           violaceum ATCC 12472]
 gi|34102328|gb|AAQ58694.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Chromobacterium violaceum ATCC 12472]
          Length = 481

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 29/186 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G ++A DR  +   V +D      E  E             P    +TGI+ +
Sbjct: 8   IIDLETTGGNIARDRITEVGMVLIDG-----ERVERLSWLVNPGQPIPPFIENMTGISNE 62

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+      +        ++  +N RFD  + +N F R+             
Sbjct: 63  MVAGAPPFSAQA----DELLDRLQGRLLLAHNARFDYGFLKNEFRRHGLRFQAR------ 112

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  L   +GI+    H A AD  A   
Sbjct: 113 ----ALCTVKLSRRLYPQHFK----------HSLDSLIARHGIDMPERHRALADAEAVYR 158

Query: 187 LVWLIR 192
            + +  
Sbjct: 159 FIRIAE 164


>gi|262046916|ref|ZP_06019876.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
 gi|260572898|gb|EEX29458.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
          Length = 1436

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/474 (12%), Positives = 128/474 (27%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E +E  + F       +    + + +T IT
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        EA   ++   F        +  +N++FD  +      R            
Sbjct: 475 DEMVGAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  LA    +   + H A  D  AT
Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQSRHTLDSLAKKYNVSLEHHHRANQDAEAT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   K +                  +   P          +           
Sbjct: 572 GYLMFKLLDAFNKKYHENNLNNLNGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSI 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +     S   R+   L       +       ++       ++        + 
Sbjct: 632 ASTKDFFRIPRTPKSDLARLHDGLLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQ 691

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P     +   +    D  +  E +  + +     ++     +  +    +D   +   + 
Sbjct: 692 PPATYSQLIADGLIKDEDQLHEIIENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIA 751

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    +    +   + +++      F   D        +    N        E  +
Sbjct: 752 AQRSNPSRNKPQPDLHFYSTQEMLD-AFSFLGEDV-----AKKIVIDNTNKI--ADELSE 803

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 804 IQ-PIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 856


>gi|270284149|ref|ZP_05965623.2| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093]
 gi|270277190|gb|EFA23044.1| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093]
          Length = 214

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 53/192 (27%), Gaps = 12/192 (6%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   ++  D ET G     +   +   VRV R     +   +                 +
Sbjct: 14  MPLDYISLDIETTGLAPRQETITEIGAVRV-RDGRIADRFSML---INPGKHIPSRITAL 69

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+        +++      I  F    +   +  +NIRFD  +               
Sbjct: 70  TGISDAMVEDAPMID----EAIPAFVDWVDGDRLIGHNIRFDLSFLLKEAMLLDAALATP 125

Query: 121 SWDNGNSRWDLLDVMRAIYAFSP----DGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                 +   +        A       D +        +   +L DL +  G+    AH 
Sbjct: 126 FNAKAVNPAAMTTTAEITRAMLGPDPLDTMMIDRWLFPSERHRLSDLIVRYGVADTEAHR 185

Query: 177 AKADVYATLALV 188
           A +D   T    
Sbjct: 186 ALSDATQTYQCF 197


>gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1449

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D+ET G     D+  + A +++ +  + I+  +             P    +T I
Sbjct: 408 TYVIFDFETTGLSKINDQIIEIAAIKI-QNNQIIDEFQTL---INPQQELTPFIENLTNI 463

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q      +     +  + +F       I+  +NI FD  +  N   ++          
Sbjct: 464 SNQDLKNQPL----IATILPKFLKFCENSILIAHNISFDMGFLVNQTKKHLN------LK 513

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R               D     F L+ LA    I   N H A +DV  
Sbjct: 514 LNLPFIDTLNLARYC------------LDSNLRYFNLKSLAKYFKISFENHHRAMSDVLI 561

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  +   +           Y 
Sbjct: 562 TKTIFQQLLNYLLTKNIQFYQ 582


>gi|332293348|ref|YP_004431957.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171434|gb|AEE20689.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 466

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 30/208 (14%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G+ +  +R  +   VR+ +  E ++           +    P    +TGI   
Sbjct: 11  VIDVETTGKGINGNRITEICAVRL-KDGEVVDKFTSL---VNPEQYIPPFITNLTGIDDA 66

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 +   E + RI     + +  I   +N+ FD    R+ F R  +   R       
Sbjct: 67  MVADAPL-FNEIADRI---IEISSGAIFVAHNVTFDFNVLRSEFKRLGHSFTRKK----- 117

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  +R      P             S+ L +L  + GI   N H A+ D  AT+ 
Sbjct: 118 -----LCTVRLSRKLIPSLF----------SYSLGNLCASIGIPLNNRHRAEGDTDATVI 162

Query: 187 LVWLI--REKKPKLFEYLYDYRNKNQLR 212
           L   +   ++  K+     + R+K    
Sbjct: 163 LFKRLLTLDEDGKVMSSFLNVRSKEATL 190


>gi|256843343|ref|ZP_05548831.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|293381212|ref|ZP_06627220.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus crispatus 214-1]
 gi|256614763|gb|EEU19964.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|290922252|gb|EFD99246.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus crispatus 214-1]
          Length = 1436

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/474 (12%), Positives = 128/474 (27%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E +E  + F       +    + + +T IT
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        EA   ++   F        +  +N++FD  +      R            
Sbjct: 475 DEMVGAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  LA    +   + H A  D  AT
Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQSRHTLDSLAKKYNVSLEHHHRANQDAEAT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   K +                  +   P          +           
Sbjct: 572 GYLMFKLLDAFNKKYHENNLNNLNGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSI 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +     S   R+   L       +       ++       ++        + 
Sbjct: 632 ASTKDFFRIPRTPKSDLARLHDGLLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQ 691

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P     +   +    D  +  E +  + +     ++     +  +    +D   +   + 
Sbjct: 692 PPATYSQLIADGLIKDEDQLHEIIENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIA 751

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    +    +   + +++      F   D        +    N        E  +
Sbjct: 752 AQRSNPSRNKPQPDLHFYSTQEMLD-AFSFLGEDV-----AKKIVIDNTNKI--ADELSE 803

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 804 IQ-PIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 856


>gi|89902537|ref|YP_525008.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89347274|gb|ABD71477.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 722

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 58/202 (28%), Gaps = 27/202 (13%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + ++D ET G + A  D   Q    R+    +KI   E F      D L    +V I G
Sbjct: 531 SYTVFDTETTGLNPAEGDEIIQIGAARIVN--KKILRQESFEQLVNPDRLISAASVQIHG 588

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  + +    +  E     H F       ++  +N  FD  + +               
Sbjct: 589 ITQDRVIGQPRI-GEVLPAFHAF---AQDTVLVAHNAAFDMKFLQLKEAATG-------- 636

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +          +          S +L+ +A    I  +  H A  D  
Sbjct: 637 ------------LAFHQPVLDTLLLSAVVHPNQESHRLEAIAERFNITVLGRHTALGDAM 684

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
            T  +   +      +  Y   
Sbjct: 685 VTAEVWLRLIPLLNAMGIYTLR 706


>gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 224-1]
 gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 224-1]
          Length = 1389

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/476 (12%), Positives = 128/476 (26%), Gaps = 49/476 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +  E +E  + F       +      + +T IT
Sbjct: 372 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 427

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E +  ++   F        +  +N++FD  +      R   D        
Sbjct: 428 DEMVGAAD-DEKDVIKKFKDF---YGDRPLCGHNVQFDVGFVNAALRRAGLDEI------ 477

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 478 SQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 524

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +     F      +  +  +     +   P                      
Sbjct: 525 GYLMFKLLDAFNARFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 584

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +     S   +  + L       +       ++       ++        + 
Sbjct: 585 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 644

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P    +    +    D     E +  + +     ++        +     +   +   L 
Sbjct: 645 PPAAYQTLIDDDLIKDEDELHEIIQNIYKLGKELNKPVVATGDSHYVEPHEAIYRKILLA 704

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    + +  +   + +++      F   D             N     + K    
Sbjct: 705 AQKSNPNRNKKLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIEN-----TNKLADQ 753

Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             E    K  L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 754 IEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 809


>gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
 gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
          Length = 318

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 100/344 (29%), Gaps = 43/344 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+     E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-HNHELVDQFVSY---VNPERSIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N+  D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNNVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +         NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCAAVEEEGKRKA----NKEVLDETAVFEAVKEMLVRNKRDIEWIRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +I   + G  +           + + TS           +K    N   ++ 
Sbjct: 220 -DIKAFYPIIRLKVKGRKKYVLTEKVEDDVREICTSLT-----YEAALKSEIGNTRIMID 273

Query: 305 PIDYCKK----EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344
            ++   K       E   +           +     ++     +
Sbjct: 274 SVEDILKLESYIVAEYDSVLRALDEYRANKVNADEEIKKYLNTM 317


>gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
 gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
          Length = 315

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 103/343 (30%), Gaps = 40/343 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLLEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +         NK  L + +  + +  ++  +           + + + 
Sbjct: 162 AAVYQKCASIEEEKTRK----ENKVVLDETVVYEAVKEILVRNKRNVEWLRCMNVGSYL- 216

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    V+   + G  +           K + TS           +K    N   +L 
Sbjct: 217 -DIKAFYPVMRLKVKGRKKYVLTEILEDDVKEICTSLT-----CEPALKNEVGNTRIMLN 270

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
            ++   K         +   L+ L   ++     D     Y  
Sbjct: 271 SVEDVLKL-ESYIVEQYDVVLQTLRDYKENEMNADEKLKEYLN 312


>gi|167767436|ref|ZP_02439489.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1]
 gi|167710728|gb|EDS21307.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1]
 gi|291558729|emb|CBL37529.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SSC/2]
          Length = 235

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 28/212 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V +D ET G     D+  +   V++ R  +         C    +       + +T
Sbjct: 1   MKDYVAFDLETTGLSPDSDQIIEIGAVKI-RDGKISGKYN---CIIHPEIEVSDFIINLT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+     + G+   E    + +F        I  +N+ FD  + +            + 
Sbjct: 57  GISRDMLRK-GIPLKE---GVEEFLEFSGDLPILGHNVMFDYKFMKMAAA-------SFK 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +    +  D L V R                 G  + KL+ L       +  AH A  D 
Sbjct: 106 YPFEKTGVDTLKVAR-------------KLLTGLENKKLETLCAHYHYVNQAAHRAYDDA 152

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            AT  +   ++++ P   E     + + +++K
Sbjct: 153 LATAVVFEQMKKEFPTEEEIFQPQQLQFKVKK 184


>gi|94501331|ref|ZP_01307852.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65]
 gi|94426602|gb|EAT11589.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65]
          Length = 738

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 61/193 (31%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI D ET G      R  +   V+V    E ++  +                  +TGI+
Sbjct: 573 YVIVDVETTGGRKEQHRVTEVGMVKV-LNGEIVDEWQSL---INPMRHIPQSITRLTGIS 628

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V   + +  I +F       +   +N+ FD  + R+ F R            
Sbjct: 629 NEMVSNAPV-FDDVADEIAEF---CAGSVFVAHNVNFDYGFFRSEFERLGR--------- 675

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                      R                 G +S+ L  L  A  I+  N H A  D  A 
Sbjct: 676 -----------RFHAPKLCTVQMSRKYLPGHSSYSLGKLCAALDIDLENHHRALDDAKAA 724

Query: 185 LALVWLIREKKPK 197
             +  LI+EK+  
Sbjct: 725 AHVFRLIQEKRQT 737


>gi|311741608|ref|ZP_07715431.1| epsilon subunit family exonuclease [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303272|gb|EFQ79352.1| epsilon subunit family exonuclease [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 221

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 70/221 (31%), Gaps = 25/221 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G +   DR  + A VR D  +  I+S          D     +   I GIT
Sbjct: 21  FAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTL---LNPDGK-AIKNSHIHGIT 76

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +      +E       +    +   +  +N  FD         R           +
Sbjct: 77  NDMVVTAP-TFSEVYGDFTSYI---DGMQLFAHNAPFDSKMIVAEVDRMTGGDN-----D 127

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G+  +  +D +         G            + L  L    G+++ +AH A AD  +T
Sbjct: 128 GDEFFPFIDTIDLAKQMLDCGP-----------YNLPALLDRLGLDNPDAHAAVADATST 176

Query: 185 LALVWLIREKKPKLF-EYLYDYRNKNQLRKLIDIQNMTPLV 224
           + ++  +   K       +       +        ++ PL+
Sbjct: 177 VNMLHALFGFKRGEIGRKILRQGQAFRATNTWRKSHVAPLL 217


>gi|47096482|ref|ZP_00234074.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254899404|ref|ZP_05259328.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes J0161]
 gi|254912457|ref|ZP_05262469.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
 gi|254936784|ref|ZP_05268481.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
 gi|284802344|ref|YP_003414209.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5578]
 gi|284995486|ref|YP_003417254.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5923]
 gi|47015135|gb|EAL06076.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609379|gb|EEW21987.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
 gi|284057906|gb|ADB68847.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5578]
 gi|284060953|gb|ADB71892.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5923]
 gi|293590439|gb|EFF98773.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
          Length = 928

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+    + H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
           86-1044]
 gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
           86-1044]
          Length = 231

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 70/241 (29%), Gaps = 30/241 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    + YD ET G     DR  + A    D      +E                 EA  
Sbjct: 1   MPARPIFYDTETTGIKAEHDRIVEIAA--YDPISGCSLEEL------VNPGIPIPKEASK 52

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +  IT            E  ++  +F S  +  +I +NN  FD ++ R+ F R+  +   
Sbjct: 53  VHHITDDMVKDAP-TFKEVGQKFIEFCS-GDVILIAHNNDNFDVHFLRHEFKRHALEMPE 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
           W +      +D L   R                       LQ L     IE  NAH A  
Sbjct: 111 WRF------FDTLKWARRYR-------------PDLPRHALQFLREIYSIEANNAHRALD 151

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DV     +   + +       Y      ++            PL  V   +    + +  
Sbjct: 152 DVIVLHKVFEKMSDDLDIEQSYSLLCMPRDITVMPFGKYQGKPLQEVPEDYVKWLAKSEA 211

Query: 240 I 240
            
Sbjct: 212 F 212


>gi|116873334|ref|YP_850115.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742212|emb|CAK21336.1| ATP-dependent helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 928

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYSTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGIAPKDVKNAPLFE-DVAPIIASLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+   G+ H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHRADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|114321202|ref|YP_742885.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227596|gb|ABI57395.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 714

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 57/208 (27%), Gaps = 27/208 (12%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV++D E  G +    D     AGVRV      + + E F           P +V   G
Sbjct: 508 SFVVFDCEMTGLNPEGGDEIISIAGVRV-VNGRVL-TGETFDRIINPGRPIPPGSVRFHG 565

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         +E      + QF S     ++  +N  FD  +                 
Sbjct: 566 ITDDDVQDKPPIEV----VLPQFKSFVGDAVLVAHNAAFDMKFISMKEREAG-------- 613

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +R         +     D       L  L    GI     H A  D  
Sbjct: 614 ------------VRFDNPVLDTLLLSALLDGDEEDHSLDALCDRYGIAITGRHTALGDTL 661

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210
           AT  L+  I E+        +    K  
Sbjct: 662 ATAELLVRIIERLEAQGYQTFGEVMKAS 689


>gi|16803938|ref|NP_465423.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes EGD-e]
 gi|224501301|ref|ZP_03669608.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes FSL R2-561]
 gi|16411352|emb|CAC99977.1| dinG [Listeria monocytogenes EGD-e]
          Length = 928

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+    + H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
 gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
          Length = 318

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 100/344 (29%), Gaps = 43/344 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+     E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-HNHELVDQFVSY---VNPERSIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N+  D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNNVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +         NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCAAVEEEGKRKA----NKEVLDETAVFEAVKEMLVRNKRDIEWIRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +I   + G  +           + + TS           +K    N   ++ 
Sbjct: 220 -DIKAFYPIIRLKVKGRKKYVLTEKMEDDVREICTSLT-----YEAALKSEIGNTRIMID 273

Query: 305 PIDYCKK----EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344
            ++   K       E   +           +     ++     +
Sbjct: 274 SVEDILKLESYIVAEYDSVLRALDEYRANKVNADEEIKKYLNMM 317


>gi|110598328|ref|ZP_01386602.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM
           13031]
 gi|110340026|gb|EAT58527.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM
           13031]
          Length = 219

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 62/203 (30%), Gaps = 30/203 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +    V+ D+ET G      DR  +   V +  + E +   +         +        
Sbjct: 5   LAESVVVLDFETTGLSPEYGDRAIEIGAVLL-EEGEIVGRFQKLM---NPGFRISQFIEG 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            TGIT +        E E      +F +  N   I  +N  FD  +      R       
Sbjct: 61  YTGITNEMLKGQPCCE-EVMAEFSEFIAGRN---IVAHNAAFDRRFLDFELKRA------ 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAK 178
                  S    L V R IY               + + +LQ L    GI +    H A 
Sbjct: 111 -KRAYEGSCCCSLLVSRRIY-------------QDSPNHRLQTLVSHAGIRQTGVFHRAL 156

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
           AD   T  L   + E+  + +  
Sbjct: 157 ADAEMTAQLWLSMIERIRRQYGM 179


>gi|89898728|ref|YP_515838.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
 gi|89332100|dbj|BAE81693.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
          Length = 249

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 26/187 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D E  G DV  DR  +FA  R       I+S E        D +   E+  I  I+
Sbjct: 9   FVCLDCEMTGLDVKKDRIIEFAAKRFTFD-NVIDSMETL---INPDRVISAESQRIHRIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    + +E   +I  F    +   I  +++ FD         R        ++ +
Sbjct: 65  DAMLKDQPRI-SEVFPKIQAFLKEGD--YIVGHSVGFDLQVLTQEAERIG-----ETFLS 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + +                  + +  L+ LA+   + +   H A  DV   
Sbjct: 117 KYCIIDTLRLAK--------------EYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEIN 162

Query: 185 LALVWLI 191
           + +    
Sbjct: 163 INIFKHF 169


>gi|312887472|ref|ZP_07747071.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM
           18603]
 gi|311300112|gb|EFQ77182.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM
           18603]
          Length = 456

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 59/207 (28%), Gaps = 29/207 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G   +     + A +  D         E          L       +TGI 
Sbjct: 2   YAIVDIETTGGHASAHGITEIAIIIHDGH-TITNRFETL---INPGMLIPMHIQVLTGID 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      +  ++ +++       C    +N+ FD  + ++    + YD        
Sbjct: 58  NDMVKNAP-PFSSIAQHVYEILE---PCTFVAHNVNFDYSFVKHHLMASGYDLQS----- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L       GI++   H A  D  AT
Sbjct: 109 -----PKLCTVRLGRKIF----------PGLPSYSLGKFCGHMGIDNSARHRAMGDADAT 153

Query: 185 LALVWLIREKKPKLF-EYLYDYRNKNQ 210
             L  ++     +    +    R+K  
Sbjct: 154 AKLFSMMLLNDKEGHITHTLKQRSKES 180


>gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771]
          Length = 238

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 60/188 (31%), Gaps = 27/188 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D  +DR  +  G+ +   +    +T   +  P  D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         AE +  I  FF          +N  FD  +    F R             
Sbjct: 62  EFLKDK-KAFAEVAEEILAFFGDAK---WIAHNATFDMGFINAEFARIGLPPIL-----P 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R      P+               L  L    G++  H   H A  D   
Sbjct: 113 ERVVDTLSMARRKNPMGPN--------------SLDALCRRYGVDNSHRAKHGALLDSEL 158

Query: 184 TLALVWLI 191
              +   +
Sbjct: 159 LAEVYIEM 166


>gi|254827216|ref|ZP_05231903.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
 gi|258599599|gb|EEW12924.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
          Length = 928

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+    + H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|291513942|emb|CBK63152.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Alistipes shahii WAL 8301]
          Length = 255

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 65/197 (32%), Gaps = 27/197 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    + +D ET G D A DR  + + V+V    E+I        +         EA  I
Sbjct: 5   LKRPIIFFDLETTGVDTARDRIVEISMVKVMPDGEEI----TKTRRLNPGMHIPEEASAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT           A+ +R + QF         G+N+ RFD       F R   D    
Sbjct: 61  HGITDDDVRDCP-TFAQVARSLEQFIR--GCDFGGFNSNRFDLPVLVEEFLRAGVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D  R  +    +      +     ++K          +   AH A+AD
Sbjct: 114 -----------VDFKRRKFIDVQNIFHKKEQRTLVAAYKF-----YCDKDLEEAHSAEAD 157

Query: 181 VYATLALVWLIREKKPK 197
             AT  ++    ++   
Sbjct: 158 TKATYEVLKAQLDRYDD 174


>gi|221632241|ref|YP_002521462.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM
           5159]
 gi|221156344|gb|ACM05471.1| DNA polymerase III, epsilon subunit [Thermomicrobium roseum DSM
           5159]
          Length = 693

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 58/201 (28%), Gaps = 27/201 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D ET G   A  R  +   VR       +E   V               V +T
Sbjct: 83  PRSFVALDVETTGLRPARHRIIEIGAVRY-EDGCCVERFSVL---VNPHRRLPVYIVRLT 138

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI  +  L       + +     F     + +IGYN   FD  +      R         
Sbjct: 139 GIRDEDLLTAP-SFVDVAAAFRVFLGE--STVIGYNVG-FDLDFLNAELRRIGQGPL--- 191

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N   D+L + RA                    + L  +  + G+     H A  D 
Sbjct: 192 ---PNPALDVLPLARA-------------LLTANGRYDLDAICRSIGLARGTRHRALPDA 235

Query: 182 YATLALVWLIREKKPKLFEYL 202
            AT  L   + E+  ++    
Sbjct: 236 EATAVLYLHLVERAEQVGYRS 256


>gi|224500250|ref|ZP_03668599.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes Finland 1988]
 gi|254831500|ref|ZP_05236155.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 10403S]
          Length = 928

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+    + H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|323467153|gb|ADX70840.1| DNA polymerase III [Lactobacillus helveticus H10]
          Length = 317

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 25/195 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ + D ET G     DR  +  GV+V R  + ++        P ++ +P      + GI
Sbjct: 32  NYTMLDIETTGLSPFRDRITELGGVKV-RNGQIVDQYTNLVKFPKNNKVP-AFITKLNGI 89

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++   +G+   +  +   +F    +  IIGYN               NF       ++
Sbjct: 90  TEEQLTNEGIPAEQAIKEFREFI--GDDTIIGYNVNFDL----------NFLYDLSQKYN 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +DV+R    + P               +L D     GI  V  H   AD   
Sbjct: 138 LPVLNNDYVDVLRLAKVYYPRQHN-----------RLIDCMQRAGIAQVEQHHGLADSLD 186

Query: 184 TLALVWLIREKKPKL 198
           T+ +     +   + 
Sbjct: 187 TIKVYNDFNQHFTED 201


>gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 958

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 54/181 (29%), Gaps = 28/181 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV  D ET G     DR  + A VR      +I                      +TGI
Sbjct: 5   SFVAIDVETTGTSPEHDRLIEVAAVRF-EDGREIGCFSRL---IDPGCPVPQRIQHLTGI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P        +E E    +  F        +  +N  FD  + +  F R       WS+ 
Sbjct: 61  HPAMLAGKPRIE-EVVPDLASFL---GDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSY- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D  ++ R     +              + +L  LA   G+   + H A+ D  A
Sbjct: 116 ------DTAELARVALPLA-------------RNHRLATLAELLGLPLEHHHRAEDDARA 156

Query: 184 T 184
            
Sbjct: 157 C 157


>gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 1433

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 74/490 (15%), Positives = 147/490 (30%), Gaps = 55/490 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V +D ET G     D   +F GV +      ++  + F   P       P    +T I
Sbjct: 384 SYVSFDLETTGLSNYYDHIIEFGGVLI-ENGRVVKKMQTFIKAPVPVR---PFIQELTNI 439

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E E    I +F       ++  +N +FD  + +    R   +  +    
Sbjct: 440 TDADLVNAPSIE-EAMDEILEFLGDH---VLVAHNAQFDIDFIQETLRRIGKEPIQN--- 492

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA--LANGIEHVNAHDAKADV 181
              +  D LD+ RA               D   S++L  +A  +  G +   AH A  D 
Sbjct: 493 ---AVIDTLDLSRA-------------LFDNRRSYRLGSIARFMRIGYDEGVAHRADYDA 536

Query: 182 Y------------ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
                          L+ +  I + +    E  +    K+    +   Q+    ++    
Sbjct: 537 EVLSLVFLEMLRLEQLSTMQTIDDLQSLNNESSFKKLRKSHCTVIAKTQSSIKDLYQLIT 596

Query: 230 FGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289
              ++                +  I        R    + +      LF     +     
Sbjct: 597 LSHTKYLAFFGKTSKGDAVMAEPRILRRELERFRENLLIGAGCTNSELF--EIAMNKSQE 654

Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKP 348
              + V       +MP+D        +      R L+ +  ++   T L     A+ N  
Sbjct: 655 ALERCVAFYDYVEIMPLDLYAPLLESQAIESESRLLDIINRIIATATKLNKPILAVGNVH 714

Query: 349 YTSSSQDVDSQLYDGFFADVDRQIMDRI---LRTAPEQLSTLNLPFSDRRLPELFFR--Y 403
           Y   S+ V   +Y         +    I    R    +    +   ++  L    F    
Sbjct: 715 YNHPSEKVIRDVYIHSQGIGGSRHPLYIFNEQRRMAFEAPNQHFRSTNEMLDAFAFLGAD 774

Query: 404 RARNFPHTLSEKEKQDWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLI 457
           +A  +      K   +  +   +KK L    +E     L+ +    + +  G+   E + 
Sbjct: 775 KAYEYVVKNPVKLLNEIEDISPKKKELFTPHLENSDELLKDIVYHNAHKLYGNPLPELVQ 834

Query: 458 NALYEYLQWV 467
             +   L+ +
Sbjct: 835 ARIERELKSI 844


>gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 398

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 53/194 (27%), Gaps = 29/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 38  LVFVDLETTGGTPAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQPIPPFIQQLTGIS 92

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE +  +   F   +  +   +N  FD  + R  F R  +         
Sbjct: 93  DAMVRDAP-SFAELAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 143

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   +G+     H A AD    
Sbjct: 144 -----DVLCTVRLSRALF----------PRESRHGLDALIARHGLVPAARHRALADADLL 188

Query: 185 LALVWLIREKKPKL 198
                 + +  P+ 
Sbjct: 189 WQFWRHLHDVVPRE 202


>gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
          Length = 375

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 53/194 (27%), Gaps = 29/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGTPAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQPIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE +  +   F   +  +   +N  FD  + R  F R  +         
Sbjct: 70  DAMVRDAP-SFAELAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   +G+     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIARHGLVPAARHRALADADLL 165

Query: 185 LALVWLIREKKPKL 198
                 + +  P+ 
Sbjct: 166 WQFWRHLHDVVPRE 179


>gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
          Length = 375

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 53/194 (27%), Gaps = 29/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGTPAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQPIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE +  +   F   +  +   +N  FD  + R  F R  +         
Sbjct: 70  DAMVRDAP-SFAELAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   +G+     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIARHGLVPAARHRALADADLL 165

Query: 185 LALVWLIREKKPKL 198
                 + +  P+ 
Sbjct: 166 WQFWRHLHDVVPRE 179


>gi|226224503|ref|YP_002758610.1| ATP-dependent helicase [Listeria monocytogenes Clip81459]
 gi|254825606|ref|ZP_05230607.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
 gi|225876965|emb|CAS05674.1| Putative ATP-dependent helicase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|293594849|gb|EFG02610.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
 gi|328466248|gb|EGF37405.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 1816]
          Length = 928

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+    + H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|310830408|ref|YP_003965509.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2]
 gi|309249875|gb|ADO59441.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2]
          Length = 311

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 28/197 (14%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +V+ D ET G   A   R  + AGV++    + ++           +    P+   +TGI
Sbjct: 26  YVVADIETTGFSPAKGGRIIEVAGVKI-ENGKIVDEFNQL---INPEQKIYPKITELTGI 81

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      V   +     ++F       +   +N  FD            +D Y   + 
Sbjct: 82  TNEMVSGKPV-FGQVLPEFYRFI---GDAVFVAHNKSFD------------WDRYLLHYF 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                        A  A     I          ++ L+D+    G++  N H A  D  A
Sbjct: 126 EKVGII-------ADNASICTKILAKMYRPNLPAYGLEDICKDAGVQITNHHRALDDSIA 178

Query: 184 TLALVWLIREKKPKLFE 200
              +          L++
Sbjct: 179 LAHVFLRYLNTYAPLYQ 195


>gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 1432

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/476 (11%), Positives = 131/476 (27%), Gaps = 49/476 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +  E +E  + F       +      + +T IT
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E +  ++  +F        +  +N++FD  +      R   +        
Sbjct: 471 DEMVGAAD-DEKDVIKKFKEF---YGDRPLCGHNVQFDVGFVNAALRRAGLEEI------ 520

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 521 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F      +  +  +     +   P                      
Sbjct: 568 GYLMFKLLDAFNERFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 627

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +     S   +  + L       +       ++       ++        + 
Sbjct: 628 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 687

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P    +    +    D     E +  + +     ++     +  +     +   +   L 
Sbjct: 688 PPAAYQTLIEDDLIKDEDELHEIIQNIYKLGKELNKPVVATSDSHYVEPHEAIYRKILLA 747

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    + +  +   + +++      F   D             N     + K    
Sbjct: 748 AQKGNPNRNKNLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIDN-----TNKLADQ 796

Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             E    K  L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 797 IEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852


>gi|254931930|ref|ZP_05265289.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
 gi|293583482|gb|EFF95514.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
          Length = 928

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+    + H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|284040095|ref|YP_003390025.1| DNA polymerase III subunit epsilon [Spirosoma linguale DSM 74]
 gi|283819388|gb|ADB41226.1| DNA polymerase III, epsilon subunit [Spirosoma linguale DSM 74]
          Length = 180

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G      R  + A  R D Q + ++S               P    +TGI+
Sbjct: 2   YCIVDVETTGGVKGPTRLTEIAIFRHDGQ-QVVDSFHSL---LNPGCPIPPFIRHLTGIS 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +           F+   +   ++    I   +N+ FD  + +       +D  R +   
Sbjct: 58  DEMVQDAPT----FADVANDVLNITQDAIFVAHNVGFDFSFIQKELNWLGHDFLRRT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L  L  +  I     H A+ D  AT
Sbjct: 111 -------LCTVRTSRKLL----------PGYPSYSLGKLCRSLEIPLNGRHRAQGDAAAT 153

Query: 185 LALVWLIREKKPK 197
           + L  ++ +   +
Sbjct: 154 VLLFEMLLKNDAQ 166


>gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
 gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
          Length = 318

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 100/344 (29%), Gaps = 43/344 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+     E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-HNHELVDQFVSY---VNPERSIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N+  D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNNVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +         NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCAAVEEEGKRKA----NKEVLDETAVFEAVKEMLVRNKRDIEWIRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +I   + G  +           + + TS           +K    N   ++ 
Sbjct: 220 -DIKAFYPIIRLKVKGRKKYVLTEKMEDDVREICTSLT-----YEAALKSEIGNTRIMID 273

Query: 305 PIDYCKK----EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344
            ++   K       E   +           +     ++     +
Sbjct: 274 SVEDILKLESYIVAEYDSVLRALDEYRANKVNADEEIKKYLNTM 317


>gi|46908132|ref|YP_014521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes serotype 4b str. F2365]
 gi|46881402|gb|AAT04698.1| ATP-dependent helicase DinG [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 928

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+    + H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M]
 gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 674

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 61/207 (29%), Gaps = 31/207 (14%)

Query: 4   HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            FV+ D ET G           D   +   V+V R    +                 P+ 
Sbjct: 56  TFVVVDLETTGGRATGTEASPPDAITEIGAVKV-RGGVILGEFATL---VDPQRSIPPQI 111

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V +TGIT         ++      +  FF      ++  +N  FD  + R    R     
Sbjct: 112 VRLTGITTAMLCDAPTID----SVLPMFFEFVGNSVLVAHNAGFDIGFLRAAAGRCDIAW 167

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                        +L  +R                + A S +L  LA    +     H A
Sbjct: 168 PGSK---------VLCTVRLARRVL--------SREEAPSVRLAALARLFSVATQPTHRA 210

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
             D  AT+ ++  + E+      + Y 
Sbjct: 211 LDDARATVEVLHALIERVGNQGVHSYA 237


>gi|254852803|ref|ZP_05242151.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
 gi|300763791|ref|ZP_07073788.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
 gi|258606130|gb|EEW18738.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
 gi|300515527|gb|EFK42577.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
          Length = 928

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+    + H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 375

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 50/188 (26%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGTPAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQPIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE +  +   F   +  +   +N  FD  + R  F R  +         
Sbjct: 70  DAMVRDAP-SFAELAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   +G+     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIARHGLVPAARHRALADADLL 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWRHLH 173


>gi|154484062|ref|ZP_02026510.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC
           27560]
 gi|149735104|gb|EDM50990.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC
           27560]
          Length = 237

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 64/204 (31%), Gaps = 28/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V  D ET G  V  D+  +   V+V R  + +++               P    +
Sbjct: 1   MVKDYVCVDIETSGIRVKWDKIIEIGAVKV-RDGKAVDTFSEL---INPGLKLSPYITEL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       +E      + +F       +I  +NI FD  + +             
Sbjct: 57  TGITDEMLKDKPFIE----EVLPRFIEFAGDDVIMGHNIMFDYSFLKQNA-------INQ 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + R                 G  S  L+ L    GI   N H A  D
Sbjct: 106 KLKFDKMGIDTLKIAR-------------KTLKGLESRGLEYLCNYYGIADENHHRAFND 152

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
              T  L  ++ EK       L++
Sbjct: 153 AEVTSKLYNVLMEKFGTESPGLFE 176


>gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 398

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 50/188 (26%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 38  LVFVDLETTGGTPAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQPIPPFIQQLTGIS 92

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE +  +   F   +  +   +N  FD  + R  F R  +         
Sbjct: 93  DAMVRDAP-SFAELAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 143

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   +G+     H A AD    
Sbjct: 144 -----DVLCTVRLSRALF----------PRESRHGLDALIARHGLVPAARHRALADADLL 188

Query: 185 LALVWLIR 192
                 + 
Sbjct: 189 WQFWRHLH 196


>gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
 gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
          Length = 1432

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/476 (11%), Positives = 131/476 (27%), Gaps = 49/476 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +  E +E  + F       +      + +T IT
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E +  ++  +F        +  +N++FD  +      R   +        
Sbjct: 471 DEMVGAAD-DEKDVIKKFKEF---YGDRPLCGHNVQFDVGFVNAALRRAGLEEI------ 520

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 521 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F      +  +  +     +   P                      
Sbjct: 568 GYLMFKLLDAFNERFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 627

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +     S   +  + L       +       ++       ++        + 
Sbjct: 628 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 687

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P    +    +    D     E +  + +     ++     +  +     +   +   L 
Sbjct: 688 PPAAYQTLIEDDLIKDEDELHEIIQNIYKLGKELNKPVVATSDSHYVEPHEAIYRKILLA 747

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    + +  +   + +++      F   D             N     + K    
Sbjct: 748 AQKGNSNRNKNLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIDN-----TNKLADQ 796

Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             E    K  L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 797 IEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852


>gi|332312340|gb|EGJ25435.1| ATP-dependent helicase [Listeria monocytogenes str. Scott A]
          Length = 931

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 6   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 61

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 62  TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+    + H   H A +D
Sbjct: 113 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 158

Query: 181 VYATLA 186
              T  
Sbjct: 159 AEVTAD 164


>gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
 gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
          Length = 466

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 52/190 (27%), Gaps = 30/190 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + ++D ET G     D   Q   +R VD +  + E+ +               +  I GI
Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTL---VDPGGPIPRASSKIHGI 330

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  +         +    +FF      ++  +N  FD  + R                
Sbjct: 331 TDKMVMGQPR----IAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGV-------- 378

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
                  ++D +           +            L  +    GI       H A  D 
Sbjct: 379 --AFDHPIVDTVLVSAIIFGTTERHM----------LDVVCERLGIRIEKKDRHTALGDA 426

Query: 182 YATLALVWLI 191
             T   +  +
Sbjct: 427 RVTAEAMKRM 436


>gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 249

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 64/220 (29%), Gaps = 27/220 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N F+  D ET G D   DR  + A +  D   +     E        +      ++ I 
Sbjct: 6   KNKFICIDCETTGLDPQQDRIIEVAVMCFDGN-QVYAQMESL---INPECPIPETSIAIH 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            IT         +      +I +  S     II  + + FD         R+        
Sbjct: 62  HITQDMVKDKPTINH-VLPQILELISDH---IIIGHGVGFDIEILAVAAERHGIPCKIRK 117

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     LD +R    +             +    L+ L     I    AH A +DV
Sbjct: 118 NR-------FLDTLRMARLY-----------GESPVNSLEYLRKHFNIPLEGAHRAMSDV 159

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
                +   + ++     E L++  +K  L   + +    
Sbjct: 160 IVNKEVFKHLSKRYRTT-EQLFEVLSKPILMNTMPLGKHK 198


>gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 202-4]
 gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 202-4]
          Length = 1432

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/477 (12%), Positives = 135/477 (28%), Gaps = 51/477 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +  E +E  + F       +      + +T IT
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E +  ++   F        +  +N++FD  +      R   D        
Sbjct: 471 DEMVGAAD-DEKDVIKKFKDF---YGDRPLCGHNVQFDVGFVNAALRRAGLDEI------ 520

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 521 SQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP-LVHVSGMFGASRSNTALIAPV 243
             L++ + +     F      +  +  +     +   P  V V  +      N   +  +
Sbjct: 568 GYLMFKLLDAFNARFHEADLGKMNDYAKYGQVYKRAKPSHVSVLALNQEGLKNMYKLVSL 627

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A   +Y   +     S   +  + L       +       ++       ++        +
Sbjct: 628 AS-TKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEV 686

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---L 360
            P    +    +    D     E +  + +     ++        +     +   +   L
Sbjct: 687 QPPAAYQTLIDDDLIKDEDELHEIIQNIYKLGKELNKPVVATGDSHYVEPHEAIYRKILL 746

Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQ 418
                     + +  +   + +++      F   D             N     + K   
Sbjct: 747 AAQKSNPNRNKKLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIEN-----TNKLAD 795

Query: 419 DWLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
              E    K  L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 796 QIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852


>gi|119357378|ref|YP_912022.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354727|gb|ABL65598.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           DSM 266]
          Length = 219

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 63/219 (28%), Gaps = 30/219 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M +  V+ D+ET G      DR  +   V V    E ++  +         +        
Sbjct: 5   MADSVVVLDFETTGLSPQYGDRAIEIGAVLV-EHGEIVDRYQKLM---NPGFRISRFIES 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            TGIT +        E E      +F +  N   I  +N  FD  +      R       
Sbjct: 61  YTGITNEMLSGQPCCE-EVMTEFSEFIAGHN---IVAHNASFDRRFLDFELKRAKR---- 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAK 178
                               A     +        + + KLQ L    GI    + H A 
Sbjct: 113 ----------------VYEGACCCSLLVSRRIYQDSPNHKLQTLVSHAGIPEIGSFHRAL 156

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
           AD   T  L   + ++    +     + ++      ID 
Sbjct: 157 ADAEMTAHLWMSMIDRIRLQYGISMIFFDQLSELSKIDK 195


>gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           bovis PG45]
          Length = 1458

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 77/478 (16%), Positives = 143/478 (29%), Gaps = 46/478 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V +D ET G         +F  V +++  +    T  FF KP D          +TGI
Sbjct: 423 SYVSFDIETTGLSPKFHEIIEFGAVDINQDLKV-GKTTQFFIKPKD--KIGSFTTELTGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T Q     G+   E   +I+      +  I   +N +FD  + +  F  N          
Sbjct: 480 TQQMLDSKGLYIKEGLEKIYDCL---DGKIAIAHNAKFDFNFLKEQFRLNNM-------- 528

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
               R  ++D + A                G    KL+D+A   G+ +    AH    D 
Sbjct: 529 -QFPRVTVIDTLVASRIGF----------PGYKRHKLEDVASRLGVVYDPNVAHRGDYDA 577

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
                +   I  +      + +D  +K    +L    +   +  ++      +    LI 
Sbjct: 578 KVLANVWVNIISELNAKGIFTFDDLSKYSSNELYAKMHGYEVSTIALNNQGLKKQFELIT 637

Query: 242 -PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
             +             + +   R    + S  L   L   +          I E+ L   
Sbjct: 638 DCLTKKYINGPITFKEDFASLNRTDILVGSGTLKGLLIDKY--FYSSHDDFINELKLYDF 695

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLL--RQQTNLRDRFKAIYNKPYTSSSQDVDS 358
             + P   C +       I  K+  + L+ +    + + +        K      Q++  
Sbjct: 696 IEI-PAPQCFEHWIRYGFITTKQLQKGLSEIIYEAKKHSKIFIATADVKYLDPWDQEIFK 754

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFR--------YRARNF 408
            L         R  +    +    +L   N  F  ++  L +  F             N 
Sbjct: 755 SLVYAKGIKNARHYLFDYKKAEEGRLVIPNQRFLTTEEMLKQFAFLQDNQLIEELVIDN- 813

Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
              L     ++  E  K  L     ++ K KL  L  +    +  E L   + + +  
Sbjct: 814 -TQLIANMAENI-EVIKSGLFTPEFDDSKKKLYDLVYKNAYAKYGEKLPEIIQKRIDS 869


>gi|295136252|ref|YP_003586928.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
 gi|294984267|gb|ADF54732.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
          Length = 1462

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 66/198 (33%), Gaps = 30/198 (15%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     I   + +  +P    +P 
Sbjct: 2   YLIFDTETTGLPKRWDAPLTDSDNWPRCIQIAWQLHDEMGNLI-EHQDYLVRPEGFDIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  + GI+   A  +G+   E   + ++      T  I   N+ FD        +R  
Sbjct: 61  -DAERVHGISTDLAREEGISLEEMLEKFNEALGK--TKFIVGQNLGFDVNIMGAELHRAG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            D          S+   L V+      + +  + P    G   FKL  L           
Sbjct: 118 MD----------SQLLELPVLDTCTETTAEMCRIPGGRGGK--FKLPTLTELHEYLFDEP 165

Query: 171 HVNAHDAKADVYATLALV 188
              AH+A ADV AT    
Sbjct: 166 FGEAHNATADVEATTRCF 183


>gi|154488710|ref|ZP_02029559.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
           L2-32]
 gi|154082847|gb|EDN81892.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
           L2-32]
          Length = 210

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 66/223 (29%), Gaps = 30/223 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   F + D+ET G   A  DR  +   V V       +  E               A +
Sbjct: 1   MNQGFAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLI-----HVDRSVGASW 55

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +  IT +  L     E   +  +    +     +   +N+ FD  +    + R       
Sbjct: 56  VHHITARDLLHAPDFEG-IAHELRDLLA---GRVFVAHNVSFDSRFLLAEYSRMGASIPV 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                      +L  M+   +    G             KL D     GI + +AH A +
Sbjct: 112 HQST-------MLCTMKLSRSLIGRG-------------KLSDCCDYFGIANEDAHSALS 151

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
           D +AT  L+  + E  P    +     +     +        P
Sbjct: 152 DAHATALLLGRLLEADPNWPGFQRRLESAADAAEQWPTFAALP 194


>gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 231

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 62/185 (33%), Gaps = 27/185 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G +   DR  +  GV +  ++     T   +  P       PEA+ + GI+ 
Sbjct: 4   IVFDTETTGLERLEDRVIEIGGVELINKF-PTGRTFHKYINPQ-GRQVHPEALAVHGISN 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++ L      AE      +FF   +   +  +N  FD  +      R      +      
Sbjct: 62  EQLLDKP-TFAEVLDEFLEFF---DGAKLVAHNAMFDLGFINAELARLGQAEIQSE---- 113

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183
               D L + R  +   P+               L  L    GIE+ +   H A  D   
Sbjct: 114 -RIIDTLALARRKHPMGPN--------------SLDALCKRYGIENGHRTLHGALLDSEI 158

Query: 184 TLALV 188
              + 
Sbjct: 159 LAEVY 163


>gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
 gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
          Length = 1449

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 29/198 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            ++ +D ET G     D   +F  VR+ +    I+  ++F                 T I
Sbjct: 393 TYISFDLETTGLSCYFDHIIEFGAVRI-KNSTIIDRKQLF---IKPPVSIPGFITSKTNI 448

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           AE    I  +       ++  +N  FD Y+      R           
Sbjct: 449 TNDMVKNA-KPFAEAIDEILDYIKD---DVLVAHNATFDYYFLNEELRRIGRKPL----- 499

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181
             N   D LD+ RA+                  +++L +L+           AH A  D 
Sbjct: 500 -TNVVIDTLDMSRAV-------------LPDRRAYRLGNLSRYYHVNYNEEEAHRADFDA 545

Query: 182 YATLALVWLIREKKPKLF 199
            A   +   + +     F
Sbjct: 546 GALADVFLCLLKDAKDKF 563


>gi|47094224|ref|ZP_00231936.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
 gi|47017396|gb|EAL08217.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
          Length = 618

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G      DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+    + H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
 gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
          Length = 465

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 57/206 (27%), Gaps = 25/206 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V R  + +                  +   +TGI
Sbjct: 21  TFVVVDLETTGGAPGARSVTEIGAVKV-RGGQVLAEFSTL---VNPGVAIPAQITMLTGI 76

Query: 64  TPQKALRDG--VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           T              E         +  +  I+  +N RFD  + R        +     
Sbjct: 77  TNAMVAGAPGVRTCVEAFLDWADLLA--DDVILVAHNARFDVGHLRGAAAAVGLEWPE-- 132

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L + R  +                 + KL  LA   G +    H A  D 
Sbjct: 133 ----PRVLDTLALARRAWT-----------RSEVPNHKLGTLAAFVGSQTRPTHRALDDA 177

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN 207
            AT+ ++    E    L     +  +
Sbjct: 178 RATVDVLHAALEVMAPLGVTHLEDLS 203


>gi|260205487|ref|ZP_05772978.1| hypothetical protein MtubK8_14429 [Mycobacterium tuberculosis K85]
 gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 645

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%)

Query: 4   HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            FV+ D ET G           D   +   V+V      +             +   P+ 
Sbjct: 42  TFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHSIPPQI 97

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V +TGIT         ++A     +  FF      ++  +N  FD  + R    R     
Sbjct: 98  VRLTGITTAMVGNAPTIDA----VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI-- 151

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     +  +L  MR                D A S +L  LA    +     H A
Sbjct: 152 -------TWPQPQVLCTMRLARRVL--------SRDEAPSVRLAALARLFAVASNPTHRA 196

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
             D  AT+ ++  + E+      + Y 
Sbjct: 197 LDDARATVDVLHALIERVGNQGVHTYA 223


>gi|218753913|ref|ZP_03532709.1| hypothetical protein MtubG1_10964 [Mycobacterium tuberculosis GM
           1503]
          Length = 493

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%)

Query: 4   HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            FV+ D ET G           D   +   V+V      +             +   P+ 
Sbjct: 34  TFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHSIPPQI 89

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V +TGIT         ++A     +  FF      ++  +N  FD  + R    R     
Sbjct: 90  VRLTGITTAMVGNAPTIDA----VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI-- 143

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     +  +L  MR                D A S +L  LA    +     H A
Sbjct: 144 -------TWPQPQVLCTMRLARRVL--------SRDEAPSVRLAALARLFAVASNPTHRA 188

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
             D  AT+ ++  + E+      + Y 
Sbjct: 189 LDDARATVDVLHALIERVGNQGVHTYA 215


>gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 647

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%)

Query: 4   HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            FV+ D ET G           D   +   V+V      +             +   P+ 
Sbjct: 44  TFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHSIPPQI 99

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V +TGIT         ++A     +  FF      ++  +N  FD  + R    R     
Sbjct: 100 VRLTGITTAMVGNAPTIDA----VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI-- 153

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     +  +L  MR                D A S +L  LA    +     H A
Sbjct: 154 -------TWPQPQVLCTMRLARRVL--------SRDEAPSVRLAALARLFAVASNPTHRA 198

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
             D  AT+ ++  + E+      + Y 
Sbjct: 199 LDDARATVDVLHALIERVGNQGVHTYA 225


>gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97]
 gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 645

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%)

Query: 4   HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            FV+ D ET G           D   +   V+V      +             +   P+ 
Sbjct: 42  TFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHSIPPQI 97

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V +TGIT         ++A     +  FF      ++  +N  FD  + R    R     
Sbjct: 98  VRLTGITTAMVGNAPTIDA----VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI-- 151

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     +  +L  MR                D A S +L  LA    +     H A
Sbjct: 152 -------TWPQPQVLCTMRLARRVL--------SRDEAPSVRLAALARLFAVASNPTHRA 196

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
             D  AT+ ++  + E+      + Y 
Sbjct: 197 LDDARATVDVLHALIERVGNQGVHTYA 223


>gi|15609328|ref|NP_216707.1| hypothetical protein Rv2191 [Mycobacterium tuberculosis H37Rv]
 gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
 gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11]
 gi|167969416|ref|ZP_02551693.1| hypothetical protein MtubH3_15860 [Mycobacterium tuberculosis
           H37Ra]
 gi|215403581|ref|ZP_03415762.1| hypothetical protein Mtub0_07840 [Mycobacterium tuberculosis
           02_1987]
 gi|215411916|ref|ZP_03420690.1| hypothetical protein Mtub9_11341 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427566|ref|ZP_03425485.1| hypothetical protein MtubT9_14751 [Mycobacterium tuberculosis T92]
 gi|215431125|ref|ZP_03429044.1| hypothetical protein MtubE_10707 [Mycobacterium tuberculosis
           EAS054]
 gi|215446420|ref|ZP_03433172.1| hypothetical protein MtubT_10948 [Mycobacterium tuberculosis T85]
 gi|219558170|ref|ZP_03537246.1| hypothetical protein MtubT1_13062 [Mycobacterium tuberculosis T17]
 gi|253798744|ref|YP_003031745.1| hypothetical protein TBMG_04035 [Mycobacterium tuberculosis KZN
           1435]
 gi|254551229|ref|ZP_05141676.1| hypothetical protein Mtube_12318 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187187|ref|ZP_05764661.1| hypothetical protein MtubCP_14313 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201308|ref|ZP_05768799.1| hypothetical protein MtubT4_14636 [Mycobacterium tuberculosis T46]
 gi|289443698|ref|ZP_06433442.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289447819|ref|ZP_06437563.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554022|ref|ZP_06443232.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570307|ref|ZP_06450534.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289745464|ref|ZP_06504842.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           02_1987]
 gi|294993576|ref|ZP_06799267.1| hypothetical protein Mtub2_03474 [Mycobacterium tuberculosis 210]
 gi|297634780|ref|ZP_06952560.1| hypothetical protein MtubK4_11686 [Mycobacterium tuberculosis KZN
           4207]
 gi|297731771|ref|ZP_06960889.1| hypothetical protein MtubKR_11808 [Mycobacterium tuberculosis KZN
           R506]
 gi|298525683|ref|ZP_07013092.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313659105|ref|ZP_07815985.1| hypothetical protein MtubKV_11818 [Mycobacterium tuberculosis KZN
           V2475]
 gi|1722908|sp|Q10384|Y2191_MYCTU RecName: Full=Uncharacterized protein Rv2191/MT2247
 gi|1237044|emb|CAA94260.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148506160|gb|ABQ73969.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
 gi|148721925|gb|ABR06550.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253320247|gb|ACT24850.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289416617|gb|EFD13857.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289420777|gb|EFD17978.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438654|gb|EFD21147.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289544061|gb|EFD47709.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685992|gb|EFD53480.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           02_1987]
 gi|298495477|gb|EFI30771.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326903805|gb|EGE50738.1| DNA polymerase III [Mycobacterium tuberculosis W-148]
 gi|328458507|gb|AEB03930.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 645

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%)

Query: 4   HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            FV+ D ET G           D   +   V+V      +             +   P+ 
Sbjct: 42  TFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHSIPPQI 97

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V +TGIT         ++A     +  FF      ++  +N  FD  + R    R     
Sbjct: 98  VRLTGITTAMVGNAPTIDA----VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI-- 151

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     +  +L  MR                D A S +L  LA    +     H A
Sbjct: 152 -------TWPQPQVLCTMRLARRVL--------SRDEAPSVRLAALARLFAVASNPTHRA 196

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
             D  AT+ ++  + E+      + Y 
Sbjct: 197 LDDARATVDVLHALIERVGNQGVHTYA 223


>gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551]
 gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
           SUMu001]
 gi|308369651|ref|ZP_07418557.2| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
           SUMu002]
 gi|308370940|ref|ZP_07423289.2| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372166|ref|ZP_07427656.2| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
           SUMu004]
 gi|308373349|ref|ZP_07431961.2| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
           SUMu005]
 gi|308374520|ref|ZP_07436352.2| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375805|ref|ZP_07668121.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
           SUMu007]
 gi|308376938|ref|ZP_07668388.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
           SUMu008]
 gi|308377937|ref|ZP_07480989.2| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379142|ref|ZP_07485216.2| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380293|ref|ZP_07489432.2| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
           SUMu011]
 gi|308404461|ref|ZP_07493965.2| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
           SUMu012]
 gi|13881937|gb|AAK46533.1| DNA polymerase III, epsilon subunit, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|289694886|gb|EFD62315.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308215084|gb|EFO74483.1| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326837|gb|EFP15688.1| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
           SUMu002]
 gi|308330190|gb|EFP19041.1| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334026|gb|EFP22877.1| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
           SUMu004]
 gi|308337834|gb|EFP26685.1| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
           SUMu005]
 gi|308341594|gb|EFP30445.1| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
           SUMu006]
 gi|308345002|gb|EFP33853.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349313|gb|EFP38164.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
           SUMu008]
 gi|308354021|gb|EFP42872.1| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
           SUMu009]
 gi|308357963|gb|EFP46814.1| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
           SUMu010]
 gi|308361897|gb|EFP50748.1| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
           SUMu011]
 gi|308365560|gb|EFP54411.1| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
           SUMu012]
          Length = 637

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 63/207 (30%), Gaps = 31/207 (14%)

Query: 4   HFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            FV+ D ET G           D   +   V+V      +             +   P+ 
Sbjct: 34  TFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHSIPPQI 89

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V +TGIT         ++A     +  FF      ++  +N  FD  + R    R     
Sbjct: 90  VRLTGITTAMVGNAPTIDA----VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI-- 143

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     +  +L  MR                D A S +L  LA    +     H A
Sbjct: 144 -------TWPQPQVLCTMRLARRVL--------SRDEAPSVRLAALARLFAVASNPTHRA 188

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
             D  AT+ ++  + E+      + Y 
Sbjct: 189 LDDARATVDVLHALIERVGNQGVHTYA 215


>gi|315038577|ref|YP_004032145.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276710|gb|ADQ59350.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 1435

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/474 (11%), Positives = 124/474 (26%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E +E  + F       +    + + +T IT
Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 473

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    ++   F        +  +N++FD  +      R            
Sbjct: 474 DEMVSAAD-DEDVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLSEI------ 523

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                    L  LA    +   + H A  D  AT
Sbjct: 524 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 570

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   K +                  +   P                      
Sbjct: 571 GYLMYKLLDAFKKKYNEDNLNNLNGYAAHGEVYKRARPSHMTVLAKDQKGLKNLYKLVSI 630

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +     S    + + L       +       ++       ++        + 
Sbjct: 631 ASTKDFYRIPRTPKSDLADLHEGLLYGSGCWQGDVFVAMMQKGYDEAREKAKFYDFLEVQ 690

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P     +   +    D  +  E ++ + +     ++        +     D   +   + 
Sbjct: 691 PPATYSQLIADGLIKDEDQLEEIISNIYKLGKELNKPVVATGDSHYVEPHDAIYRTILIS 750

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    +    +   + +++      F   D     +       N        E  +
Sbjct: 751 AQRSNPNRNKPQPDLHFYSTQEMLD-AFSFLGED-----IAKEIVIENTNKI--ADEISE 802

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    I     +++ L    + E  G+   + + + +   L  +I 
Sbjct: 803 IQ-PIKDGLYPPHIAHADEEMKKLTYDKAYELYGNPLPKIVKDRIDLELNSIIS 855


>gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 315

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 82/275 (29%), Gaps = 34/275 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +         N   L +    + +  ++  +           + + + 
Sbjct: 162 AAVYQKCASIEEEAKRK----SNTEVLDETAVYEAVKEILVRNKRNIEWIRCMNVGSYLD 217

Query: 245 WHPRYKDSVIGCNLSGDM--RVFQDLDSVQLAKRL 277
               Y    +              + D  ++   L
Sbjct: 218 IKAFYPVMRLKVKGRKKYVLTDILEDDVKEICTSL 252


>gi|323489901|ref|ZP_08095123.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
 gi|323396408|gb|EGA89232.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
          Length = 202

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 59/192 (30%), Gaps = 30/192 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            ++V+ D+ET G     D+  Q   V+        E  E  +               ITG
Sbjct: 40  ENYVVLDFETTGLRPGNDKIIQIGAVKYVNH----EREETMYLMVNPQRSISNTITRITG 95

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +      V+E       H   +      I  +N  FD  +   +        Y    
Sbjct: 96  ITNKDVENAPVIE----DIAHDLITFIGDLPIIAHNAPFDMGFLYALEDITPIPEY---- 147

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               +  D + + R                    + KL  L     +EH  AHDA  D  
Sbjct: 148 ----TVIDTVKLARKA-------------ITQTPNHKLTTLTAFLKLEHD-AHDALGDCL 189

Query: 183 ATLALVWLIREK 194
           AT A+     ++
Sbjct: 190 ATAAIYQYCYDR 201


>gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 315

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 85/275 (30%), Gaps = 34/275 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++          +     
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEPQN---- 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 118 --KVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +    L    NK  L + +  + +  ++  +           + + + 
Sbjct: 162 AAVYQKCASIEEEAKRKL----NKKALDETVVYEAVKEILVRNKRDIEWIRCMNVGSYLD 217

Query: 245 WHPRYKDSVIGCNLSGDM--RVFQDLDSVQLAKRL 277
               Y    +              + D  ++   L
Sbjct: 218 IKAFYPVMRLKVKGRKKYVLTDILEDDVKEICTSL 252


>gi|323493701|ref|ZP_08098821.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546]
 gi|323312041|gb|EGA65185.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546]
          Length = 204

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 30/197 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  ++ D+ET G    + DR  +   V++    E +++ +         +         T
Sbjct: 5   NSVIVLDFETTGLSPNMGDRAIEIGAVKL-INGEVVDTFQQLM---NPGFRVSSFIEGYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT          E E   + H F +  N   +  +N  FD  +    F R   D     
Sbjct: 61  GITNAMLANAPSCE-EVMSQFHSFIADDN---LVAHNASFDKRFLDAEFDRINKDYL--- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                   D    +      + D          A S KL DL     I++    H A AD
Sbjct: 114 -------GDFACSLLVSRRLNQD----------APSHKLGDLVRYKQIDNDGVFHRALAD 156

Query: 181 VYATLALVWLIREKKPK 197
              T  L  L+ E   +
Sbjct: 157 SQMTAKLWLLMLEDIEQ 173


>gi|219850553|ref|YP_002464986.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
           9485]
 gi|219544812|gb|ACL26550.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
           9485]
          Length = 233

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 12/200 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   D       V V+     ++ T     +P     P  E++ +  +T
Sbjct: 38  YTVIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHLT 97

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P++        AE    + +  +     ++  +    D  +              +    
Sbjct: 98  PEELRDAPPP-AEVLAELLRLIA---GRVLVVHVAEIDVRFINAALK-------PFGGRL 146

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D   +   ++  +    + P       + +L+ L  A G+     H+A  D   T
Sbjct: 147 RRPILDTARLAMTLHLNAQWLGELPRDMPA-PAVELRGLTGALGLPIYAQHNALNDAVTT 205

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L                 
Sbjct: 206 AQLFIAQATLLADQGRNNLA 225


>gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
 gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
          Length = 1450

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/414 (13%), Positives = 110/414 (26%), Gaps = 39/414 (9%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +  +F+++D ET G +       +   V++      ++                 +   +
Sbjct: 420 LEENFIVFDLETMGLNSHEHEIIEIGAVKLRGN-RIVDRFSQL---VNPQKPIPKKIQEL 475

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT +       +E E   +  +F        +  +N  FD  + R    R     Y  
Sbjct: 476 TNITQEMVDNMPTIE-EVLPKFMEFV---GDATMVAHNAAFDMGFIRRDVKRLLGYDY-- 529

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                 +  D L + R +Y                  + L++L    G+   + H A  D
Sbjct: 530 ----TPAIIDTLQMARDLY-------------PDLKGYGLKNLNKVLGLSLESHHRAVDD 572

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +  +  E+  +      +         L        +V V     A   N   +
Sbjct: 573 SQATANMFIIFMERYLEKGITNLNQITGAFPINLKKQDTHNVMVLV--QNLAGLKNMYKL 630

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-----LVPVPIKEV 295
              A    Y +       S   +  + L         F++  EL             K +
Sbjct: 631 VSEAHIDYYGNKKPRILKSHLEKYREGLIVGSSMTVHFSNDGELTDYYMRYDYESIEKNI 690

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                  L+P     + + +              +        +  K        SS+  
Sbjct: 691 GFYDYIELLPKGAYSEIYEDDGTGSISSFKAIEDM---NRYFYNLAKEKGILVTASSNVH 747

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR--YRARN 407
              +      + +     +       +  +      +D  L E  +     AR 
Sbjct: 748 YLDEEDYKIRSILLYGSGNVFRANQYKIDNKFYFRTTDEMLEEFSYLGEDIARE 801


>gi|228964616|ref|ZP_04125724.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228795047|gb|EEM42545.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 365

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|269123116|ref|YP_003305693.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
           12112]
 gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
           12112]
          Length = 1465

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G     D+  +   V++ +  + ++    F        +   + V +TGI 
Sbjct: 404 FVVFDIETTGFSPINDKIIEIGAVKL-KNGKVLDRFSEF---VNPQTIIPKKIVELTGIN 459

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +++ +   R  +F     T ++ +N      + S+     N    + +    
Sbjct: 460 DNMVKDSDIID-KVMPRFLEFVK--GTTLVAHNAKFDVGFISKKCEDLNLETDFSYIDTL 516

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S+  + DV R                     F L  L     I+  N H A  D  AT
Sbjct: 517 EWSKILVDDVKR---------------------FNLDTLTKRFNIKLENHHRAVDDANAT 555

Query: 185 LALVWLI 191
             L   +
Sbjct: 556 AELFKKL 562


>gi|325957051|ref|YP_004292463.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325333616|gb|ADZ07524.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC]
 gi|327183774|gb|AEA32221.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL
           1118]
          Length = 1435

 Score = 97.6 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/474 (11%), Positives = 124/474 (26%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E +E  + F       +    + + +T IT
Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 473

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    ++   F        +  +N++FD  +      R            
Sbjct: 474 DEMVSAAD-DEDVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLSEI------ 523

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                    L  LA    +   + H A  D  AT
Sbjct: 524 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 570

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   K +                  +   P                      
Sbjct: 571 GYLMYKLLDAFKKKYNEDNLNNLNGYAAHGEVYKRARPSHMTVLAKDQKGLKNLYKLVSI 630

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +     S    + + L       +       ++       ++        + 
Sbjct: 631 ASTKDFYRIPRTPKSDLADLHEGLLYGSGCWQGDVFVAMMQKGYDEAREKAKFYDFLEVQ 690

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P     +   +    D  +  E ++ + +     ++        +     D   +   + 
Sbjct: 691 PPATYSQLIADGLIKDEDQLEEIISNIYKLGKELNKPVVATGDSHYVEPHDAIYRTILIS 750

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    +    +   + +++      F   D     +       N        E  +
Sbjct: 751 AQRSNPNRNKPQPDLHFYSTQEMLD-AFSFLGED-----IAKEIVIENTNKI--ADEISE 802

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    I     +++ L    + E  G+   + + + +   L  +I 
Sbjct: 803 IQ-PIKDGLYPPHIAHADEEMKKLTYDKAYELYGNPLPKIVKDRIDLELNSIIS 855


>gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 476

 Score = 97.6 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 29/181 (16%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G  +  DR  +   + +D   E+IE  E             P    +TGI+  
Sbjct: 9   IVDLETTGGHITRDRITEIGILLID--GERIERYETL---VNPGQPIPPFIENMTGISDA 63

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                      F+  +          ++  +N RFD  + +N F R  +           
Sbjct: 64  MVAEAPP----FAALVETLLEKLQGRLLLAHNARFDYGFLKNEFKRAGH----------V 109

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
            + ++L  ++      P   +            L  L   +GI   + H A AD  A   
Sbjct: 110 FQSEVLCTVKLSRRLYPQHFK----------HSLDSLIARHGIVLADRHRAMADALAVYH 159

Query: 187 L 187
            
Sbjct: 160 F 160


>gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis
           KBAB4]
 gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 315

 Score = 97.6 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 100/344 (29%), Gaps = 43/344 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+     E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-HNHELVDQFVSY---VNPERSIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTKVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N+  D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNNVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +         NK  L +    + +  ++  +           + + + 
Sbjct: 162 AAVYQKCAAVEEEGKRKA----NKEVLDETAVFEAVKEMLVRNKRDIEWIRCMNVGSYL- 216

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +I   + G  +           + + TS           +K    N   ++ 
Sbjct: 217 -DIKAFYPIIRLKVKGRKKYVLTEKMEDDVREICTSLT-----YEAALKSEIGNTRIMID 270

Query: 305 PIDYCKK----EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344
            ++   K       E   +           +     ++     +
Sbjct: 271 SVEDILKLESYIVAEYDSVLRALDEYRANKVNADEEIKKYLNTM 314


>gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
 gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
           16823]
          Length = 458

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 68/201 (33%), Gaps = 28/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ I D ET G      +  + A  + D   + I+S +        +         +TGI
Sbjct: 2   NYAIVDIETTGGSTKSSKITEIAIYKHD-GMKIIDSFDTL---VNPEMPIPEFISRLTGI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        E +++I +F      CI   +N+ FD    R+ F    YD       
Sbjct: 58  HDDMVENAPK-FYEIAKQIIEFTED---CIFVAHNVGFDYGIIRHEFKLLGYDY------ 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R   L  +RA     PD            S+ L  L  A GI+ +  H AK D  A
Sbjct: 108 ----RKAHLCTVRASRYVIPDHE----------SYSLGKLTKALGIQLIGRHRAKGDAEA 153

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L  L+     K  +    
Sbjct: 154 TAHLFTLLHTTDSKGLQTFIQ 174


>gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7]
 gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1500

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T+  + +D ET G +   D+  +   V++ R  E ++  ++       +         +
Sbjct: 445 LTDEIICFDLETTGTNAKEDKIIEIGAVKL-RNLEIVDKFDML---VDPEVPLTEFISNL 500

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYR 119
           T IT           A+    I  F +       +  +N  FD  + RN   R   D   
Sbjct: 501 TNITDDMLKGQ----ADIRTAIDAFIAFCGDSPCLVAHNAPFDTGFIRNTCERLGIDFNF 556

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                  S  D + + + +                    KL  +A   G      H    
Sbjct: 557 -------SSVDTVPMSQLM-------------LPQLERHKLNYVAEHFGYGDFQHHRGCD 596

Query: 180 DVYATLALVWLIREKKPKLFEYLYDY 205
           D      +   + +     +  +   
Sbjct: 597 DAEVLGHIFIELSKMLMAQYPLVLIT 622


>gi|217963949|ref|YP_002349627.1| DnaQ family exonuclease/DinG family helicase [Listeria
           monocytogenes HCC23]
 gi|217333219|gb|ACK39013.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           monocytogenes HCC23]
 gi|307571481|emb|CAR84660.1| ATP-dependent helicase [Listeria monocytogenes L99]
          Length = 928

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKNAPLFE-DVAPIIAGLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+    + H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|162455854|ref|YP_001618221.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce
           56']
 gi|161166436|emb|CAN97741.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce
           56']
          Length = 258

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 50/184 (27%), Gaps = 19/184 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET GRD A DR  +   + + R  E +                  E+  I GI 
Sbjct: 45  IAFVDVETTGRDPAGDRIIELG-IVIGRSGEILTRYNWL---IHPGRPIPAESTAIHGIK 100

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE +  I   F         YN   FD  +      R            
Sbjct: 101 DADVEGKP-SFAEVAEEILGCFK--GAIPAAYNA-TFDRSFLLAELERVGMRPREPP-PA 155

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +D +                     S  L D+A   GI    AH A  D  A 
Sbjct: 156 MRREVDWVDPLTFARELY----------KNEESRALGDMAARLGISLEKAHRATDDAEAA 205

Query: 185 LALV 188
           L ++
Sbjct: 206 LQVL 209


>gi|154492230|ref|ZP_02031856.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC
           43184]
 gi|154087455|gb|EDN86500.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC
           43184]
          Length = 256

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 27/197 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  + + V+V    ++    E    +   +    PE+  I
Sbjct: 5   LKNPLVFFDLETTGINIVKDRIVEISFVKVYPNGKE----ESKTRRINPEMPIPPESTAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          E ++ +          + GYN+ RFD       F R   D    
Sbjct: 61  HGITDEDVKDCP-TFKEIAKSLAAQIE--GCDLAGYNSNRFDIPLLAEEFLRAGVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ +  +           +   A ++K             NAH A+AD
Sbjct: 114 -----------IDLNKRKFVDVQTIFHKMEQRTLAAAYKF-----YCDKSLENAHTAEAD 157

Query: 181 VYATLALVWLIREKKPK 197
             AT  ++    ++ P+
Sbjct: 158 TMATYEVLKAQLDRYPE 174


>gi|261251946|ref|ZP_05944520.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
 gi|260938819|gb|EEX94807.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
          Length = 204

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 69/216 (31%), Gaps = 30/216 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  ++ D+ET G    + DR  +   V++    + +++ +         +         T
Sbjct: 5   NSVIVLDFETTGLSPNMGDRAIEIGAVKL-IDGQVVDTFQQLM---NPGFRVSSFIEGYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT           AE     + F    N   +  +N  FD  +    F R         
Sbjct: 61  GITNNMLAGAP-SCAEVMSDFNDFIGNDN---LVAHNASFDKRFLDAEFERI-------- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
             N N R +    +      + +          A S KL DL     I++    H A AD
Sbjct: 109 --NRNYRGEFACSLLVSRRLNQE----------APSHKLGDLVRYMNIDNDGVFHRALAD 156

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
              T  L  L+ E   +   +   +    ++ K   
Sbjct: 157 SQMTAKLWLLMLEDMQQQGIHQPSFSLMQKVSKTSK 192


>gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           ATCC 33323]
 gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           gasseri ATCC 33323]
          Length = 1432

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/476 (12%), Positives = 128/476 (26%), Gaps = 49/476 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +  E +E  + F       +      + +T IT
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E +  ++   F        +  +N++FD  +      R   D        
Sbjct: 471 DEMVGAAD-DEKDVIKKFKDF---YGDRPLCGHNVQFDVGFVNAALRRAGLDEI------ 520

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 521 SQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +     F      +  +  +     +   P                      
Sbjct: 568 GYLMFKLLDAFNARFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 627

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +     S   +  + L       +       ++       ++        + 
Sbjct: 628 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 687

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P    +    +    D     E +  + +     ++        +     +   +   L 
Sbjct: 688 PPAAYQTLIDDDLIKDEDELHEIIQNIYKLGKELNKPVVATGDSHYVEPHEAIYRKILLA 747

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    + +  +   + +++      F   D             N     + K    
Sbjct: 748 AQKSNPNRNKKLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIEN-----TNKLADQ 796

Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             E    K  L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 797 IEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852


>gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
 gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
          Length = 1432

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/478 (11%), Positives = 133/478 (27%), Gaps = 53/478 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +  E +E  + F       +      + +T IT
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E +  ++  +F        +  +N++FD  +      R   +        
Sbjct: 471 DEMVGAAD-DEKDVIKKFKEF---YGDRPLCGHNVQFDVGFVNAALRRAGLEEI------ 520

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 521 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F      +  +  +     +   P                      
Sbjct: 568 GYLMFKLLDAFNERFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 627

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +     S   +  + L       +       ++       ++        + 
Sbjct: 628 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 687

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P    +    +    D     E +  + +     ++     +  +     +   +   L 
Sbjct: 688 PPAAYQTLIEDDLIKDEDELHEIIQNIYKLGKELNKPVVATSDAHYVEPHEAIYRKILLA 747

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                    + +  +   + +++                F +   +    +         
Sbjct: 748 AQKGNPNRNKNLPDLHFYSTQEMLD-------------AFSFLGEDVAKEIVIDNTNKLA 794

Query: 422 EHRKKM------LTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
           +H +++      L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 795 DHIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852


>gi|169827550|ref|YP_001697708.1| ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41]
 gi|168992038|gb|ACA39578.1| Probable ATP-dependent helicase dinG [Lysinibacillus sphaericus
           C3-41]
          Length = 923

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 71/215 (33%), Gaps = 30/215 (13%)

Query: 1   MTN--HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M     + I D ET G   A  DR  Q A V +     +IE T   F             
Sbjct: 1   MMESQKYAIVDLETTGHSPANGDRMIQIAIVIMKDW--EIERTYTKF--INPGKAIPTFI 56

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T IT +          E +  I++  +    C+   +N  FD  + +  F R     
Sbjct: 57  QDLTHITNEDVKDS-YPFEEHADYIYELLAD---CVFVAHNADFDLSFLQAEFKRAGLP- 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     + D +++ +                  +  FKL DLA    IE  NAH A
Sbjct: 112 -----KWQGKKMDTVELAKI-------------LFPMSLGFKLGDLAADLNIELANAHRA 153

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
             D  AT  L     ++   L +   +  +K   R
Sbjct: 154 DDDARATAELFKCCWKELLSLPQLTLEQMHKRSFR 188


>gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma
           citri]
          Length = 1453

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/457 (12%), Positives = 116/457 (25%), Gaps = 54/457 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  V +D         ++                 +TGI
Sbjct: 409 KYVIFDLETTGLSSGYDEIIEFGAVIMDG---ISGERQIINHLFKPSVKLSSFTTELTGI 465

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +           F   I Q        I+  +N  FD  + ++   +        +  
Sbjct: 466 TDELLADKPT----FIESIDQILEYFKDAILIAHNAEFDLGFIQSWLKKAGRSEINNT-- 519

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181
                 D L + R               +    +++L  +A           AH    D 
Sbjct: 520 ----VIDTLQLSRI-------------LEPHLKNYRLGTIARCYSVIYNEEVAHRGDYDA 562

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
                +      K    +   +D  +   +      + + P          +        
Sbjct: 563 IVLTDIYEHQLRKMINNYGIEFDN-DIENIHDPAVYKKLRPKHMAILAKNQAGLLELFKL 621

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
             + H +Y  S      S   +   +L                   +    + +      
Sbjct: 622 ITSAHTKYFYSSPKLLRSVIEQHRSNLLIGSSCVNGDVFEVARNKNLSELRETIKFYDYI 681

Query: 302 ILMPIDYCK------KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
            + P    K          ER     K  +     L +          +  +        
Sbjct: 682 EVQPPSVYKHLVQMGDLSEERLLTVIKDIVFTAKELNKLVVATGDVHYLNPEDKIFREVY 741

Query: 356 VDSQLYDGFF------ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN-- 407
           ++++   G                D+ LRT  E ++       D                
Sbjct: 742 INAKGIGGRPHPLYDYKKRVTDNPDQFLRTTMEMMNEFKFLNDDE--------LIYEIVV 793

Query: 408 -FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
             P+ +S++ ++  +E  K  L   +IE     L+ L
Sbjct: 794 TNPNLISDQIEK--VEIIKDKLYTPKIEGSDQLLKEL 828


>gi|33596994|ref|NP_884637.1| putative exonuclease [Bordetella parapertussis 12822]
 gi|33566445|emb|CAE37698.1| putative exonuclease [Bordetella parapertussis]
          Length = 247

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 58/180 (32%), Gaps = 27/180 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G  VA     +FA VRV    +             D  +P P    +TGIT
Sbjct: 80  FVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVR--TDGRVP-PFISRLTGIT 136

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  RDGV   +       F        + ++N  FD  + +    R        +   
Sbjct: 137 QAEVERDGVPVRQAFGDFLDFIE---GGPLFFHNASFDRRFLQAAADRTGLPFEAQT--- 190

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L + R  +                 S KL  LA   G      H A ADV  T
Sbjct: 191 ----HCTLMLARQAW-------------PELPSHKLNVLARHLGAS-EPTHRALADVRTT 232


>gi|33600836|ref|NP_888396.1| putative exonuclease [Bordetella bronchiseptica RB50]
 gi|33568436|emb|CAE32348.1| putative exonuclease [Bordetella bronchiseptica RB50]
          Length = 247

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 58/180 (32%), Gaps = 27/180 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G  VA     +FA VRV    +             D  +P P    +TGIT
Sbjct: 80  FVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVR--TDGRVP-PFISRLTGIT 136

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  RDGV   +       F        + ++N  FD  + +    R        +   
Sbjct: 137 QAEVERDGVPVRQAFGDFLDFIE---GGPLFFHNASFDRRFLQAAADRTGLPFEAQT--- 190

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L + R  +                 S KL  LA   G      H A ADV  T
Sbjct: 191 ----HCTLMLARQAW-------------PELPSHKLNVLARHLGAS-EPTHRALADVRTT 232


>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
 gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 1458

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 66/455 (14%), Positives = 136/455 (29%), Gaps = 34/455 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D+  +F  ++   +  ++ES ++F      +     +   IT I
Sbjct: 420 TYVIFDIETTGLSPYYDKIIEFGAIKY-HKGVQVESIQMF---INPEEKISDKIFAITKI 475

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      +   E   +I  F    ++ +I +N I+FD  +       N  D  +    
Sbjct: 476 SNEDVKDA-LKIKEALVKIKDFI--GDSVLIAHNGIKFDLPFLNCKLEENKMDIIKNP-- 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  L+D ++   A +              S  +         +   AH A  D   
Sbjct: 531 -------LIDTLQISRAINEQIHGH--------SLGVIARKYKIDYDETQAHRADKDAEY 575

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI--A 241
            L +   + E +        +  N N     +  +N   L+ V         N   +   
Sbjct: 576 LLNIWKRMLENQKLQDIKTLNEINSNLQNDFLRERNRGSLITVYCKNEGEIRNLYKLIST 635

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
            +  +      V   N +     F   +S    +    +    + ++   IK+ +     
Sbjct: 636 SLTSNFDGGPKVYWENFNEFNNSFIVSNSATEGEIFEAAMSNTQQVLEDIIKDKYDFITI 695

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
                               +  ++   +++       +  A  +  Y + S +V  ++Y
Sbjct: 696 GSPECFLHDIHREIYKRGWIEDAIKR--IIKIANKYNKKVVATSDTYYLNESDEVYFRVY 753

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
                   ++            L       +D    E  F     N P  L         
Sbjct: 754 VNAKVLGGKRNRLFKYNELNTVLPKYYFRTTDELKDEFSFL----NDP-VLVNDIVVTNS 808

Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGL 456
            +    L  + I+  K  L S   E   D+ K+ +
Sbjct: 809 NYIAS-LIDANIKPIKETLHSPHIEGASDKLKQLI 842


>gi|297571338|ref|YP_003697112.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931685|gb|ADH92493.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 200

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 58/197 (29%), Gaps = 27/197 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G D+A DR  +   V +    E+                    A  I  I
Sbjct: 2   TYAVVDVETTGLDLATDRIIEIGIVLLSDSLEQSGYFHSL---IDPQR--SITAQHIHHI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +           A  + R+ +     +  II  +N  FD  +    F R           
Sbjct: 57  SSAMVADAP-SFALVAERVAKVL---DGQIIVAHNAPFDLGFLNAEFARAQAGI------ 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R + +  +     + P+G           S  L  LA   GIE   AH A AD   
Sbjct: 107 -SIDRANAVCTLDQSRIYCPEG-----------SHSLIGLAARLGIETPVAHRALADALT 154

Query: 184 TLALVWLIREKKPKLFE 200
              L       + +   
Sbjct: 155 CTELFRHYHACESRGHR 171


>gi|307327522|ref|ZP_07606708.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306886921|gb|EFN17921.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 274

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 61/190 (32%), Gaps = 20/190 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR  Q A V  DR   ++   E          L   EA  I GIT  +
Sbjct: 15  FDTETTGLDVFKDRIVQAALVGQDRSGREVFREEWL---INPGILIPREATKIHGITSDR 71

Query: 68  ALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A+ DG   AE   +I           C +   N  +D         R+            
Sbjct: 72  AMEDGQDPAEAIEQITGLLEKALRAGCALVIQNAPYDLALLDAEAQRHSVVPLA-ERRPV 130

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D + + +                       L  L+   G+ +  AH A AD   TL
Sbjct: 131 APVLDPVMLAKV--------------AKVEGRHSLAALSARFGVTNPRAHTAYADAVTTL 176

Query: 186 ALVWLIREKK 195
           A++  +    
Sbjct: 177 AVLRKLMMID 186


>gi|29839853|ref|NP_828959.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
 gi|29834200|gb|AAP04837.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
          Length = 249

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 57/187 (30%), Gaps = 26/187 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D E  G DV  DR  +FA +R     + I+S E        D +   E+  I  I+
Sbjct: 9   FVCLDCEMTGLDVKKDRIIEFAAMRFTFD-KVIDSMETL---INPDRVISAESQRIHRIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    + AE   +I  F    +   I  +++ FD         R         +  
Sbjct: 65  DAMLKDQPRI-AEVFPKIKSFLKEGD--YIVGHSVGFDLQVLTQEAERIGESFLSKYYII 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R                          + +  L+ LA+   + +   H A  DV   
Sbjct: 122 DTLRL-------------------AKEYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEIN 162

Query: 185 LALVWLI 191
           + +    
Sbjct: 163 INIFKHF 169


>gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
 gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
          Length = 318

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 100/344 (29%), Gaps = 43/344 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+     E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-HNHELVDQFVSY---VNPELSIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N+  D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 119 KNNVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            A+       + +         NK  L +    + +  ++  +           + + + 
Sbjct: 165 AAVYQKCAAVEEEGKRKA----NKEVLDETAVFEAVKEMLVRNKRDIEWIRCMNVGSYL- 219

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +I   + G  +           + + TS           +K    N   ++ 
Sbjct: 220 -DIKAFYPIIRLKVKGRKKYVLTEKMEDDVREICTSLTHEA-----ALKSEIGNTRIMID 273

Query: 305 PIDYCKK----EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344
            ++   K       E   +           +     ++     +
Sbjct: 274 SVEDILKLESYIVAEYDSVLRALDEYRANKVNADEEIKKYLNTM 317


>gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
 gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
          Length = 876

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 86/209 (41%), Gaps = 26/209 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             + +++D E+ G DV  D   Q A +++++  E ++  E F            ++ ++ 
Sbjct: 507 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKKPVK----DSYYVH 562

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G + +   R G  + +  +   +F       II  +N+++D     +   RN     ++ 
Sbjct: 563 GFSDEMLQRIGEDKEKVLK---EFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK 619

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                + +D LD+ R  Y              G  ++KL++L+     +H  +HDA  D+
Sbjct: 620 -----TFYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 661

Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209
            AT  L+   I EK  +         +K+
Sbjct: 662 IATGELLVRAINEKIRETSMERMALMSKH 690


>gi|325286607|ref|YP_004262397.1| DNA polymerase III subunit alpha [Cellulophaga lytica DSM 7489]
 gi|324322061|gb|ADY29526.1| DNA polymerase III, alpha subunit [Cellulophaga lytica DSM 7489]
          Length = 1479

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 114/384 (29%), Gaps = 36/384 (9%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     I   + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPKRWDAPYTDTDNWPRCIQIAWQLHDDMGNVI-EHQDYLVKPDGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+   A +DGV  AE   + +       T  +   N+ FD       F+R  
Sbjct: 61  -DAEKIHGISTALAEQDGVPLAEVLEKFNTALEK--TKFVVGQNVGFDLNIMGAEFHRLQ 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            ++              L V+      +    Q P    G   FKL  L        G  
Sbjct: 118 VENQLQE----------LPVLDTCTEHTASLCQIPGGRGGK--FKLPTLTELHQFLFGEP 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
              AH+A ADV AT      +  K+            +    K     N  P+  +    
Sbjct: 166 FGEAHNATADVEATTRCFLELIRKQQ---YTAEQLDVQPDYFKNFSEANPKPIELIGLKH 222

Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290
              +  +  IA  A   +    V    +  ++   +  +   L      S  +    VP 
Sbjct: 223 INLKKASKKIA-DALWAKDTGGVSKEEIKENLATLESAEFSHLHNHTQFSILQSTISVPD 281

Query: 291 PIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT 350
            IK    N  P +   D+        +   +     N  +  +      R++A       
Sbjct: 282 LIKATAKNNMPAVAMTDHANMMGA--FHFVNGVLNHNKGVKSRNDANEIRYEATQENRLE 339

Query: 351 SSSQDVDSQLYDGFFADVDRQIMD 374
              + +   + +     +      
Sbjct: 340 EGEEPLHEFIPEKEITPIIGCEFQ 363


>gi|282890349|ref|ZP_06298877.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499731|gb|EFB42022.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 249

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 60/205 (29%), Gaps = 27/205 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV  D ET G DV  DR  + A  R     + +E  E        +      ++ I  I
Sbjct: 8   TFVCIDCETTGLDVHADRIIEVAVARFTFD-QILEQFESL---INPECPIPESSIQIHHI 63

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +   +I           I  + + FD         R           
Sbjct: 64  TAEMVADKP-PITQVIPQILDAVRSH---TIVGHGVLFDIELIAVAAERAGIPCSIRQN- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R                  +    L+ L +   I+   AH A +DV  
Sbjct: 119 ---PYLDTLRLAR--------------LYGESPINSLEQLRMHFNIQFEGAHRAMSDVLV 161

Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208
            + +   + ++     + L+   +K
Sbjct: 162 NIEVFKHLAKRYKTT-DNLFQILSK 185


>gi|255522480|ref|ZP_05389717.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes FSL J1-175]
          Length = 807

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G      DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++ R +Y              G  S+KLQDL+    + H   H A +D
Sbjct: 110 -SLGKMKKLDTVELARIMY-------------PGIDSYKLQDLSDEFNLGHDKPHRADSD 155

Query: 181 VYATLA 186
              T  
Sbjct: 156 AEVTAD 161


>gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom
           phytoplasma]
          Length = 1492

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 77/241 (31%), Gaps = 24/241 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +++V+ D ET G     DR    A V++ +  + IE  +     P  D         +T 
Sbjct: 403 HNYVVLDIETTGFSKTRDRIISIAAVKI-QNGKIIEYFDELI-NPGKDIKISNLIQRLTN 460

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ +  L    +  E   +   F      C++  +N  FD  + +  F            
Sbjct: 461 ISDEILLNKPHI-KEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPL--- 516

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   ++D +     +    +++ S +    SFK++             H+A  D  
Sbjct: 517 ------LPVIDTLTLAQKYFNKILKYFSLEKIVKSFKIKL------DSEGQYHNALFDAR 564

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  +   + E+      + +         +           HV+ +    +    L   
Sbjct: 565 ATALIFLEMLEQLEAQKIFNFYD------LQGSLDIKFERPYHVNIIVKNKKGYNNLFHL 618

Query: 243 V 243
           +
Sbjct: 619 I 619


>gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria
           pomeroyi DSS-3]
 gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria
           pomeroyi DSS-3]
          Length = 470

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 55/189 (29%), Gaps = 28/189 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F ++D ET G     D   Q   VRV +                      P +  + G++
Sbjct: 278 FAVFDTETTGLLPHKDEIVQIGAVRVVKGRIVPGERIDQLV--DPGRPIPPASTRVHGVS 335

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    + A  +R+ HQF       +I  +N  FD  + R    R   D        
Sbjct: 336 DAMVAGAPDIVA-AARQFHQFARD---AVIVAHNAPFDIAFLRRHGPRCGLDW------- 384

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                 +LD +                   + +  L  L    G+       H A  D  
Sbjct: 385 ---DHPILDTVLLSAVLF----------GASETHTLDALCDRLGVTIPAPLRHTALGDAQ 431

Query: 183 ATLALVWLI 191
           AT  ++  +
Sbjct: 432 ATAEVLCRM 440


>gi|313123567|ref|YP_004033826.1| 3'-5' exonuclease with to crispr-associated protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280130|gb|ADQ60849.1| 3'-5' exonuclease with to CRISPR-associated protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 290

 Score = 97.2 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 64/187 (34%), Gaps = 30/187 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D ET G +   D+      V+ D           F+     D     + V +T
Sbjct: 123 QKDFVAVDIETTGLNTESDQILSIGAVKHDG--------TEFYRLIKQDIDVPKQIVELT 174

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP    ++GV   +    +  F        I   N RFD  +    + +      +  
Sbjct: 175 GITPAMLDKEGVPLQDVLGELTDFV---GDVPIVGYNFRFDSAFLNREYRKCGMQELKNE 231

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   DLL V++    F  +             +KLQ +    GIE+   H+A +D 
Sbjct: 232 IK------DLLPVVKRKEKFLDN-------------YKLQTVLSNYGIENKVPHNAVSDA 272

Query: 182 YATLALV 188
            AT  L 
Sbjct: 273 RATKELA 279


>gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
 gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
          Length = 1432

 Score = 97.2 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/476 (12%), Positives = 128/476 (26%), Gaps = 49/476 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +  E +E  + F       +      + +T IT
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E +  ++   F        +  +N++FD  +      R   D        
Sbjct: 471 DEMVGAAD-DEKDVIKKFKDF---YGDRPLCGHNVQFDVGFVNAALRRAGLDEI------ 520

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 521 SQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +     F      +  +  +     +   P                      
Sbjct: 568 GYLMFKLLDAFNARFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 627

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +     S   +  + L       +       ++       ++        + 
Sbjct: 628 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 687

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P    +    +    D     E +  + +     ++        +     +   +   L 
Sbjct: 688 PPASYQTLIDDDLIKDEAELHEIIQNIYKLGKELNKPVVATGDSHYVEPHEAIYRKILLA 747

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    + +  +   + +++      F   D             N     + K    
Sbjct: 748 AQKSNPNRNKNLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIEN-----TNKLADQ 796

Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             E    K  L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 797 IEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852


>gi|89890830|ref|ZP_01202339.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
 gi|89516975|gb|EAS19633.1| DNA  polymerase III [Flavobacteria bacterium BBFL7]
          Length = 453

 Score = 97.2 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 30/214 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D   E ++           +    P  V +TGI 
Sbjct: 2   YAIVDVETTGGKFNEEGITEIAIYKFDGH-EIVDQFASL---VNPEKEIQPFVVKLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   R      E ++RI +        ++  +N  FD    R  F R  Y+ +  +   
Sbjct: 58  NKMLARAPK-FYEVAKRIIEIMQ---GTVLVAHNANFDYRMLRIEFERLGYEFHTQT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                           S+ L  L  + GI   + H A  D  AT
Sbjct: 111 -----------------LCTVELAQQLMPEEESYSLGKLTRSLGIPITDRHRATGDALAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
           + L  ++  K     + +     K++ RK ++  
Sbjct: 154 VKLFKMLMAKDSD--KTIISTSLKSETRKKVEPN 185


>gi|291456364|ref|ZP_06595754.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Bifidobacterium breve DSM 20213]
 gi|291381641|gb|EFE89159.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Bifidobacterium breve DSM 20213]
          Length = 235

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 54/193 (27%), Gaps = 26/193 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G         +   VRV R    ++  +              +   +TGIT
Sbjct: 34  YVALDLETTGFYPNRCAITEIGAVRV-RGGRVVDQFQQL---INPLCPIPRQITALTGIT 89

Query: 65  PQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
                    ++    +F   +    +   T  I  +N+ FD  +          D     
Sbjct: 90  DAMVADHDPIDGVLPQFISWLADSNAAAETEPIVGHNVSFDLRF---------LDYNTRH 140

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                      D M+   A  P               +L DL +  GI     H A +D 
Sbjct: 141 IAGCGFACADYDTMQISRALFPKQSH----------HRLADLIVRFGIADNEEHRALSDA 190

Query: 182 YATLALVWLIREK 194
             T      +R  
Sbjct: 191 IQTQQCFEWMRHY 203


>gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
 gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
          Length = 870

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 85/209 (40%), Gaps = 26/209 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             + +++D E+ G DV  D   Q A +++++  E ++  E F            ++ ++ 
Sbjct: 501 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKKPVK----DSYYVH 556

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G + +   R G  + +  +   +F       II  +N+++D     +   RN     ++ 
Sbjct: 557 GFSDEMLQRIGEDKEKVLK---EFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK 613

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                + +D LD+ R  Y              G  ++KL++L+     +H  +HDA  D+
Sbjct: 614 -----TFYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 655

Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209
            AT  L+   I +K            +K+
Sbjct: 656 IATGELLVRAINKKIIPTSMERMALMSKH 684


>gi|218261817|ref|ZP_03476532.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223763|gb|EEC96413.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii
           DSM 18315]
          Length = 256

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 27/197 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  + + V+V    ++    E    +   +    PE+  I
Sbjct: 5   LKNPLVFFDLETTGINIVKDRIVEISFVKVYPNGKE----ESKTRRINPEMPIPPESTAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          E ++ +          + GYN+ RFD       F R   D    
Sbjct: 61  HGITDEDVKDCP-TFKEIAKSLATQIE--GCDLAGYNSNRFDIPLLAEEFLRAGVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ R  +           +   + ++K             NAH A+AD
Sbjct: 114 -----------IDLNRRKFIDVQTIFHKMEQRTLSAAYKF-----YCDKSLENAHTAEAD 157

Query: 181 VYATLALVWLIREKKPK 197
             AT  ++    ++ P+
Sbjct: 158 TMATYEVLKAQLDRYPE 174


>gi|330504960|ref|YP_004381829.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328919246|gb|AEB60077.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01]
          Length = 200

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 51/192 (26%), Gaps = 29/192 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                + D+ET G      R  +   V +      ++  +             P    +T
Sbjct: 1   MESIAVIDFETTGVSPTQARATEIG-VAIIEGGRIVDRYQSLM---NSGAWVPPFIEQLT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+     +    + +    +  F        +  +N  FD  +      R         
Sbjct: 57  GISNAMLRKAPPSD-QVMNEVADFI---GERPLLAHNASFDQKFWDAELARVRR------ 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                         R +  F+   +        A S KL +L    G  +   AH A AD
Sbjct: 107 --------------RRLQPFACSLLLSRRLLPEAPSHKLGNLNAWAGLPDTGRAHRALAD 152

Query: 181 VYATLALVWLIR 192
                 L   + 
Sbjct: 153 AEMAANLTLHLF 164


>gi|251796459|ref|YP_003011190.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           JDR-2]
 gi|247544085|gb|ACT01104.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           JDR-2]
          Length = 953

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 64/201 (31%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G  V+ D   Q     +D   E +E+   F                +TGI
Sbjct: 2   KFAVLDLETTGHSVS-DDILQVGLAVLDDNLEIVETYSSF---VRPTIEIPAFITQLTGI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        E    + Q        ++  +N+ FD  +      R  Y  +     
Sbjct: 58  DADMVADAP----ELDEVLMQLIPYLEDAVLVAHNVNFDAGFLNQALDRCGYHPFI---- 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R D ++++R +Y                T+++L  +    GI H   H A +D  A
Sbjct: 110 --GRRLDTIELLRILY-------------PSITTYQLGAVTELFGIAHDQHHRADSDAIA 154

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L     +K  +L      
Sbjct: 155 TAELFAQSVQKLRQLPLLTLQ 175


>gi|256847331|ref|ZP_05552777.1| helicase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715995|gb|EEU30970.1| helicase [Lactobacillus coleohominis 101-4-CHN]
          Length = 950

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 28/209 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G  V   DR  Q   V + +  + I   E    +             +TGI
Sbjct: 16  YSVVDLETTGTSVKSGDRIIQVGLVMI-QDGKIINQFET---RINPLMKIPRSVQQLTGI 71

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +   +  ++E + +  +    S     I   +N+ FD  +  +   R   D       
Sbjct: 72  TDKDVSKAPLLE-DIAPTLESLLS---GTIFVAHNVNFDFPFINHELTRVGRDPL----- 122

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R   +D +                   A S++L+DL     IEH + H A +D  A
Sbjct: 123 ----RISAIDTVTLSQIL----------MPTAKSYRLRDLTSYLHIEHDHPHSAVSDAEA 168

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLR 212
           T  L+  +  K   L         K +++
Sbjct: 169 TGVLLKDLLAKLRALPTVTLQTLVKMEMQ 197


>gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1432

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/476 (11%), Positives = 131/476 (27%), Gaps = 49/476 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +  E +E  + F       +      + +T IT
Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDEF---INPHHPLSDTTINLTSIT 470

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E +  ++  +F        +  +N++FD  +      R   +        
Sbjct: 471 DEMVGVAD-DEKDVIKKFKEF---YGDRPLCGHNVQFDVGFVNAALRRAGLEEI------ 520

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 521 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 567

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F      +  +  +     +   P                      
Sbjct: 568 GYLMFKLLDAFNERFHEADLGKMNDYAKYGQVYKRAKPSHMSVLALNQEGLKNMYKLVSL 627

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +     S   +  + L       +       ++       ++        + 
Sbjct: 628 ASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQGDVFISMMQKGYDEAREKARFYDYLEVQ 687

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P    +    +    D     E +  + +     ++     +  +     +   +   L 
Sbjct: 688 PPAAYQTLIEDDLIKDEDELHEIIQNIYKLGKELNKPVVATSDSHYVEPHEAIYRKILLA 747

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    + +  +   + +++      F   D             N     + K    
Sbjct: 748 AQKGNSNRNKNLPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIDN-----TNKLADQ 796

Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             E    K  L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 797 IEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVEDRIELELNSIIS 852


>gi|327404630|ref|YP_004345468.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
 gi|327320138|gb|AEA44630.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
           16823]
          Length = 284

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 93/291 (31%), Gaps = 34/291 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T +FV+ D ET G DVA DR  + A ++             +  +         E+  I
Sbjct: 5   LTRNFVMLDLETTGLDVAKDRIIEIALIKT----TPTGEQSEYCKRVNPTIPISKESAEI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +    +   E + +  I  F    +  + GYN+ +FD       F R  +     
Sbjct: 61  TGITDEMVATEPTFE-QLADEIAAFIGDAD--LGGYNSNKFDIPVLAEEFLRISHSFKI- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              N     D+ ++   +   +                              NAH+A  D
Sbjct: 117 ---NDRKFIDVQNIFHKMEQRTLA----------------AAYQFYCKEPMENAHNALYD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV---SGMFGASRSNT 237
              TL +     E+ P L + + +  + ++            L         +   +   
Sbjct: 158 TKVTLDVFKAQLERYPDLAKSIPELADFSRQGNQEWHDFAGRLGKTKDGQVTYNFGKHKG 217

Query: 238 ALIAPVAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
             +A VA   P Y   ++    +      + L   ++ +      ++ +  
Sbjct: 218 KTVADVAESEPGYFGWMMD---ADFPLYTKQLLREEMERIKQKRKEKREDE 265


>gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sp. HGF1]
 gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sp. HGF1]
          Length = 1528

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 64/500 (12%), Positives = 153/500 (30%), Gaps = 62/500 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V+YD ET G     D   + A V++ +    I+    F            + + +T I
Sbjct: 432 TYVVYDVETTGFSTNYDVIIEIAAVKI-KNGTIIDEFSDFA---NPHRKLSLKTIELTHI 487

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR--NFYDSYRWS 121
                     +E +  +R  +       CI+  +N  FD  +    + R           
Sbjct: 488 LQSDVDNAPELE-DVMKRFKE---WSEDCILVAHNAAFDMGHLEQTYKRFNLGVCDNPVL 543

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                +R          + ++ D             F L+ L+    ++    H A  D 
Sbjct: 544 DTLALARVLYHHQYGVYWNYATDATIDEKFKRKMKRFNLKALSKFFKVDLTQHHRAIYDA 603

Query: 182 YAT----LALVWLIREKKPKLFEYLYDYRNKNQLRKL--IDIQNMTPLVHVSGMFGASRS 235
            AT    + ++  I +   K  + +    +K    KL       +     V         
Sbjct: 604 RATGQAFILMLRDILKLDIKTHDEVNQLVDKETSFKLDRTTHVTILAQNQVGFKNLFKVV 663

Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           + ++   +   PR + S +  +  G +     ++       L   +++L+        + 
Sbjct: 664 SQSMTCDLYGQPRIRRSYLQAHREGLLIGSSCVNGEVWESALNKPYEDLQE-------KA 716

Query: 296 HLNKCPILMPIDYCKKEHFER-WGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
                  + P +       +    +         T+++    L     A  +  + +   
Sbjct: 717 KFYDYLEVQPPEVYSHLIDQNSKEMAQSIIETIKTIIKVGEELNIPVCATGDVHHLNRED 776

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
            +  Q+Y         +    +     +++ +++   +D    +  F          L E
Sbjct: 777 KLYRQIYTRTPMIGGGRHP--LNHPDIKEIPSMHFRTTDEMYHDFSF----------LDE 824

Query: 415 KEKQDW--------------LEHRKKMLTRSR--------IEEYKNKLQSL----SGEYK 448
            ++++               ++  K  L            I   K++L  +    + E+ 
Sbjct: 825 AKQKEIIVTNPNAIADSCEMIKAIKDELFTPADDFLKDKGIPSIKDRLTEMCYERAHEWY 884

Query: 449 GDEGKEGLINALYEYLQWVI 468
           G+E  + +++ L + L  +I
Sbjct: 885 GEELPQYVLDRLIKELNSII 904


>gi|313674131|ref|YP_004052127.1| DNA polymerase iii, epsilon subunit [Marivirga tractuosa DSM 4126]
 gi|312940829|gb|ADR20019.1| DNA polymerase III, epsilon subunit [Marivirga tractuosa DSM 4126]
          Length = 465

 Score = 97.2 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 31/221 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G   A +R  + A +  D + + ++  +        +    P+   I GI 
Sbjct: 2   YAIVDIETTGGYAARNRICEIAIILHDGE-KVVKEYQTL---INPERHIPPQLSAIHGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q          E ++ IH+        I   +++ FD  + +  F    Y+        
Sbjct: 58  DQMVEDAPK-FYEEAKTIHELLE---GNIFVAHSVNFDYSFVKAAFQDLGYELKLKK--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L ++    GI+  + H A  D  AT
Sbjct: 111 -------LCTVRLSRKIF----------PGLKSYSLGNICENRGIKINDRHRAFGDAIAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
             L   + +              K     +   +N+   V 
Sbjct: 154 AELFTQLVQHDTD---NHIQKSLKKNAAVVNIPENLERTVF 191


>gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit
           [Anaerococcus vaginalis ATCC 51170]
          Length = 1398

 Score = 97.2 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 30/230 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+++D ET G    +D+  +   V++    E IE           + +   + V +TG
Sbjct: 382 QRFIVFDLETTGLSKYIDKITEIGAVKI-ENGEIIEVFNEL---VNPEKMIPQKVVELTG 437

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  +    ++      + +F            N  FD  + +             S+
Sbjct: 438 ITNEMVMDKPKID----EVLPKFLEFSKDSYFVGQNTDFDIGFIKEACDNL-------SY 486

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + RA++                  F L  LA   G+   N H A  D  
Sbjct: 487 KFEPIYLDTLPMARAVF-------------PTMGRFSLDKLAKKLGVGPFNHHRASDDAM 533

Query: 183 ATLALV-WLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMF 230
            T  +   L  + K K  +   +  N  + +  L   +N + ++      
Sbjct: 534 TTAKIFIKLFEKIKDKNKDLSLEKINSIKTKWPLARHENFSSIIFAKNYH 583


>gi|224023848|ref|ZP_03642214.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
           18228]
 gi|224017070|gb|EEF75082.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
           18228]
          Length = 258

 Score = 97.2 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 80/257 (31%), Gaps = 30/257 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +          +  I
Sbjct: 5   LKNPLVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ESKTMRINPGMHIPEASSAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E ++ I +        I G+N+ RFD       F R   D    
Sbjct: 61  HGIYDADVADCP-TFKEVAKDIARDLE--GADIAGFNSNRFDVPVLVEEFLRAGID---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ R  +           +   + ++K        G    +AH A+AD
Sbjct: 114 -----------IDLTRRKFIDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV--HVSGMFGASRSNTA 238
             AT  ++    +  P + E   ++ ++              +       +F   +    
Sbjct: 158 TRATYEVLKAQLDHYPDVLENDINFLSEYSSYNKNVDFAGRIVYDDKGVEVFNFGKYKGM 217

Query: 239 LIAPVAW-HPRYKDSVI 254
            ++ V    P Y   V+
Sbjct: 218 PVSEVLQRDPGYYGWVL 234


>gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sanguinis PC909]
 gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sanguinis PC909]
          Length = 1528

 Score = 97.2 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 63/500 (12%), Positives = 153/500 (30%), Gaps = 62/500 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V+YD ET G     D   + A V++ +    I+    F            + + +T I
Sbjct: 432 TYVVYDVETTGFSTNYDVIIEIAAVKI-KNGTIIDEFSDFA---NPHRKLSLKTIELTHI 487

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR--NFYDSYRWS 121
                     +E +  +R  +       C++  +N  FD  +    + R           
Sbjct: 488 LQSDVDNAPELE-DVMKRFKE---WSEDCVLVAHNAAFDMGHLEQTYKRFNLGVCDNPVL 543

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                +R          + ++ D             F L+ L+    ++    H A  D 
Sbjct: 544 DTLALARVLYHHQYGVYWNYATDATIDEKFKRKMKRFNLKALSKFFKVDLTQHHRAIYDA 603

Query: 182 YAT----LALVWLIREKKPKLFEYLYDYRNKNQLRKL--IDIQNMTPLVHVSGMFGASRS 235
            AT    + ++  I +   K  + +    +K    KL       +     V         
Sbjct: 604 RATGQAFILMLRDILKLDIKTHDEVNQLVDKETSFKLDRTTHVTILAQNQVGFKNLFKVV 663

Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           + ++   +   PR + S +  +  G +     ++       L   +++L+        + 
Sbjct: 664 SQSMTCDLYGQPRIRRSYLQAHREGLLIGSSCVNGEVWESALNKPYEDLQE-------KA 716

Query: 296 HLNKCPILMPIDYCKKEHFER-WGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
                  + P +       +    +         T+++    L     A  +  + +   
Sbjct: 717 KFYDYLEVQPPEVYSHLIDQNSKEMAQSIIETIKTIIKVGEELNIPVCATGDVHHLNRED 776

Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
            +  Q+Y         +    +     +++ +++   +D    +  F          L E
Sbjct: 777 KLYRQIYTRTPMIGGGRHP--LNHPDIKEIPSMHFRTTDEMYHDFSF----------LDE 824

Query: 415 KEKQDW--------------LEHRKKMLTRSR--------IEEYKNKLQSL----SGEYK 448
            ++++               ++  K  L            I   K++L  +    + E+ 
Sbjct: 825 AKQKEIIVTNPNAIADSCEMIKAIKDELFTPADDFLKDKGIPSIKDRLTEMCYERAHEWY 884

Query: 449 GDEGKEGLINALYEYLQWVI 468
           G+E  + +++ L + L  +I
Sbjct: 885 GEELPQYVLDRLIKELNSII 904


>gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I]
 gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822]
 gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50]
 gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis]
 gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I]
 gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50]
 gi|332381049|gb|AEE65896.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS]
          Length = 244

 Score = 97.2 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 58/197 (29%), Gaps = 33/197 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61
           +I+D ET G D A   R  +   V      E +               D   DPEA+ + 
Sbjct: 4   IIFDTETTGLDPAQGHRIVEIGCV------EIVNRMVTGNNLHLYLNPDRDSDPEALAVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +         AE + +   F +      +  +N  FD  +      R   D     
Sbjct: 58  GLTTEFLADKPR-FAEVAEQFLAFIADAE---LIAHNAAFDVKFFNAELQRIGRDPLNTH 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179
            +N     D L   R+++                    L  L    GI   H   H A  
Sbjct: 114 CEN---IVDSLLHARSLHPG--------------KRNSLDALCDRYGISNAHRTLHGALL 156

Query: 180 DVYATLALVWLIREKKP 196
           D      +   +   + 
Sbjct: 157 DSQLLAEVWLAMTRGQD 173


>gi|295693139|ref|YP_003601749.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1]
 gi|295031245|emb|CBL50724.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1]
          Length = 1436

 Score = 96.8 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 57/474 (12%), Positives = 127/474 (26%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E +E  + F       +    + + +T IT
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        EA   ++   F        +  +N++FD  +      R            
Sbjct: 475 DEMVGAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  LA    +   + H A  D  AT
Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQSRHTLDSLAKKYNVSLEHHHRANQDAEAT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   K +                  +   P          +           
Sbjct: 572 GYLMFKLLDAFNKKYHENNLNNLNGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSI 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +     S   R+   L       +       ++       ++        + 
Sbjct: 632 ASTKDFFRIPRTPKSDLARLHDGLLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQ 691

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P     +   +    D  +  E +  + +     ++     +  +    +D   +   + 
Sbjct: 692 PPATYSQLIADGLIKDEDQLHEIIENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIA 751

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    +    +   + +++      F   D             N        E  +
Sbjct: 752 AQRSNPSRNKPQPDLHFYSTQEMLD-AFSFLGEDV-----AKEIVIDNTNKI--ADELSE 803

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    IE    +++ L    + E  G    + + + +   L  +I 
Sbjct: 804 IQ-PIKDGLYPPHIEHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 856


>gi|323140812|ref|ZP_08075727.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414694|gb|EFY05498.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 304

 Score = 96.8 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 53/199 (26%), Gaps = 27/199 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + + + D ET G     D   + + ++        +           +         +T
Sbjct: 19  PDDYTVLDIETTGLSPQNDYITEISAIKYRNNRRV-DEFSSL---VKPELSIPYYITRLT 74

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI          ++ E       F +  +  I GYN      + +      N    Y   
Sbjct: 75  GINDAMVADAPAID-EVILSFMDFLA--DDIIAGYNVAFDLSFIAE-----NLAGHYAKR 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             N     D +DVM+             +       +K   +A    I    AH A  D 
Sbjct: 127 LAN-----DYVDVMKLAQ----------NELPFLGRYKQTAVAEYFNIATAGAHRALVDC 171

Query: 182 YATLALVWLIREKKPKLFE 200
                    ++E     + 
Sbjct: 172 NICNGCYQKLKELAVADYH 190


>gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87]
 gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87]
          Length = 457

 Score = 96.8 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D + + ++           +    P  V +TGI 
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIYKFDGE-KVVDQFISL---INPERPIQPFVVGLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++RI +  +    CII  +N +FD    R  F R  ++        
Sbjct: 58  NEMLRNAPK-FYEVAKRIVEITTD---CIIVAHNAKFDYRILRTEFKRLGFEF------- 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                           S+ L  L  A GI   + H A  D  AT
Sbjct: 107 -------------QRKSLCTVELSKKLIPDMPSYSLGKLVRALGIPLSDRHRANGDAQAT 153

Query: 185 LALVWLIREKKPK 197
           + L  ++  K  K
Sbjct: 154 VKLFKMLLAKDTK 166


>gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 861

 Score = 96.8 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 67/192 (34%), Gaps = 25/192 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+YD E+ G D   DR  Q A +R+D+   +IE  E F             +  + G T 
Sbjct: 495 VVYDVESTGTDTTQDRIIQIAAMRIDKDGNEIERFERF---INPGKSVG-TSQLVHGFTD 550

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                 G           +F    N  II  +N+ +D     +   R+     ++     
Sbjct: 551 AYLAEHGESPKVVLEAFKEF---SNNRIIVGHNVNYDISILSHELARHNLGEPQFK---- 603

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +D LD+ R  Y    +              KL  L+    I H   H+A  D+ AT 
Sbjct: 604 -AVYDTLDIFRRFYPTLEN-------------HKLGFLSKYFPINHTPTHNAMDDIIATG 649

Query: 186 ALVWLIREKKPK 197
            L+     +   
Sbjct: 650 QLLIYAVRENIM 661


>gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
          Length = 867

 Score = 96.8 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 103/312 (33%), Gaps = 37/312 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +++D E+ G DV  D   Q A +R++R  E I+S E F  KP            I G
Sbjct: 499 DNIIVFDVESTGTDVTEDEIIQIAAIRINRNGEVIDSFERFL-KPKKSVKNS---EHIHG 554

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + +     G  +    +   +F       +I  +N+++D     +  +R          
Sbjct: 555 FSDEFLKEKGEDKETVIK---EFLRFSENAVIVGHNVQYDINILSSEIHRLNL-----GK 606

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               + +D LD+ R  Y                 + KL  L+     E++ +HDA  D+ 
Sbjct: 607 SKFLAFYDTLDIYRRFY-------------PNLVNHKLNTLSDIFKTENIPSHDAMDDIL 653

Query: 183 ATLALVWLIREKK-----------PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231
           AT  L+    +                +   + + ++       + + M P   V     
Sbjct: 654 ATKDLLIRALKIDIIPTSMERIAGMSKYIKAFSFISEKLNDFFKETEEMRP-CEVVNYIV 712

Query: 232 ASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291
              +   L        + +       L  D+          L   +  +      L  + 
Sbjct: 713 QHFNLKTLYPGEEGKGKIERMRDFYALLRDIDDKNKGSRDSLFDIIKLTSLSNGELESLI 772

Query: 292 IKEVHLNKCPIL 303
           +K    ++ PI+
Sbjct: 773 LKRTKKSRIPII 784


>gi|89898431|ref|YP_515541.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
 gi|89331803|dbj|BAE81396.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
          Length = 228

 Score = 96.8 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 59/231 (25%), Gaps = 30/231 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               + YD ET G  +  DR  + A       +  +   E F            EA  I 
Sbjct: 1   MTALIFYDTETTGTQIDKDRIIEIAA------FNNVTK-ESFVTYVNPKIPIPEEASKIH 53

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT            E  ++   F       ++ +NN  FD         R+  +     
Sbjct: 54  GITTSTVASAP-DFPEAYKQFRDFCGN-EAVLVAHNNDGFDFPLLEKECRRHSLEPLT-- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     +D ++    + PD               LQ L    G     AH A  DV
Sbjct: 110 -------LRTIDSLKWAQKYRPDL----------PKHNLQYLRQVYGFAENQAHRALDDV 152

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMF 230
                +   +               +      +         PL  V   +
Sbjct: 153 ITLHDVFSALIGDLSAEQVLALMEESCHPKTFKMPFGKYKGKPLTEVPASY 203


>gi|310641367|ref|YP_003946125.1| DNA polymerase iii, epsilon subunit [Paenibacillus polymyxa SC2]
 gi|309246317|gb|ADO55884.1| DNA polymerase III, epsilon subunit [Paenibacillus polymyxa SC2]
          Length = 245

 Score = 96.8 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 56/214 (26%), Gaps = 36/214 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V++D ET G      D    F  +RV      I   E F+           +   +TGIT
Sbjct: 61  VVFDLETTGFSAQHGDEILSFGAIRVVGD--VIMEKEQFYTLVNPRTEIPEQITRLTGIT 118

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +               +H F S     ++  +    D  +     ++            
Sbjct: 119 REMTDGAPP----LMNGLHDFMSFVGGRVLVAHASAHDKAFLNAALWK------TSKVQL 168

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +   D + + + +                   + L +L     I     H A  D   T
Sbjct: 169 THRVLDTMMLAKWLEPQQHQT------------YSLDELLAYQSIPIEGRHHALEDAKMT 216

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
             L           +        K  +  L D+ 
Sbjct: 217 AKL-----------WVAYVQEMLKRNVTNLADVY 239


>gi|270290279|ref|ZP_06196504.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
           acidilactici 7_4]
 gi|270281060|gb|EFA26893.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
           acidilactici 7_4]
          Length = 927

 Score = 96.8 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 29/210 (13%)

Query: 1   MTNH-FVIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M    + + D ET G   V   R  Q     ++   +  E+ +    K            
Sbjct: 1   MKKTRYAVVDLETTGTGSVEESRIIQIGCAFIEGD-QITETYQT---KINPQMTIPKRIS 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT Q+  +     A+ + +I+Q  +     +   +N+ FD  +      R+ Y   
Sbjct: 57  RLTGITDQQVRQAPK-FADVADKIYQKLA---GTVFVAHNVNFDFPFLNRELVRSGYPEL 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                        +D +                      ++L+DL     IEH + H A 
Sbjct: 113 ---------DLKAIDTVTLSQVLFS----------RTRGYRLRDLTNYLHIEHDDPHSAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNK 208
           +D  AT  L   I+    +L     +   K
Sbjct: 154 SDAVATAHLFLKIKAALSELPIVTLEQLVK 183


>gi|295426318|ref|ZP_06818977.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
 gi|295063991|gb|EFG54940.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
          Length = 1435

 Score = 96.8 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 65/476 (13%), Positives = 129/476 (27%), Gaps = 49/476 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  + +E  + F       +    + + +T IT
Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGKVLERFDKF---INPHHPLSDQTINLTSIT 473

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+   F        +  +N++FD  +      R   +        
Sbjct: 474 DEMVGAAD-DEDVVIRQFKDF---YGDMPLCGHNVQFDVGFVNAALRRAGLEEI------ 523

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  L     +   + H A  D  AT
Sbjct: 524 KQPVVDTLEVSRLLH-------------PEQTRHTLDSLVKKYDVVLEHHHRANQDAEAT 570

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   K F      +  +  +     +   P+         +           
Sbjct: 571 GYLMYKLLDAFKKKFGEDNLGKLNDFAKHGETFKRARPMHMTILAKNQAGLKNMYKLVSI 630

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
            + +          S   +  + L       R       ++       ++        L 
Sbjct: 631 ANTKDFYREPRTPKSALRKYHEGLLYGSGCWRGDVFIAMMQKGYDTAREKAKFYDYLELQ 690

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           P     +   +    D     E LT + +     +  +     A Y  P+    + +   
Sbjct: 691 PPATYSQLIADGLIKDKDELEEILTNIYKLGKELKKPVVADSDAHYVDPHEKIYRTILIS 750

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
                      Q       T  E L        D             N     + K   +
Sbjct: 751 AQRSNPNRNKPQPDLHFYSTQ-EMLDAFAFLGEDA-----AKEIVIDN-----TNKIADE 799

Query: 420 WLEH--RKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
             E    K  L    I+    +++ L    + E  G    + + + +   L  +I 
Sbjct: 800 LEEIAPIKDGLYPPHIDNADQEMKDLTYNKAYELYGKPLPKIVKDRIDLELNSIIS 855


>gi|256851899|ref|ZP_05557287.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
 gi|260661840|ref|ZP_05862750.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
 gi|282931860|ref|ZP_06337341.1| DNA polymerase III [Lactobacillus jensenii 208-1]
 gi|256615857|gb|EEU21046.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
 gi|260547309|gb|EEX23289.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
 gi|281304023|gb|EFA96144.1| DNA polymerase III [Lactobacillus jensenii 208-1]
          Length = 317

 Score = 96.8 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 65/211 (30%), Gaps = 24/211 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + + + D ET G     DR  + AG++V R  + +         P D+ +P      + G
Sbjct: 33  DDYTMLDIETTGLSPYRDRITELAGIKV-RNGKVVAEYSQLVKYPKDNKVPR-FITKLNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     L +G+   E       F       I+GYN               NF       +
Sbjct: 91  IDEALILANGMPVKEAITEFRNFI--GGDVIVGYNVNFDL----------NFIYDLCEKF 138

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  + +DV+     F              +  +L D     GI    AH    D  
Sbjct: 139 QLKKLSNNYIDVLHFSRVFF----------KKESHNRLLDCIRRLGISESEAHRGLKDSL 188

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            T A+  + R++             K+ +  
Sbjct: 189 DTKAVFDIYRKQFTPEMLNEVKDSLKSCVLT 219


>gi|150025957|ref|YP_001296783.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149772498|emb|CAL43981.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 453

 Score = 96.8 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 60/401 (14%), Positives = 117/401 (29%), Gaps = 38/401 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D   + ++           +    P  V +TGI 
Sbjct: 2   YAILDIETTGGQFNEEGITEIAIYKFDGH-QIVDQFISL---VNPEIPIQPFVVKLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +       E ++RI +       CII  +N  FD    R  F R  YD    +   
Sbjct: 58  NAMLVSAPKFH-EVAKRIVEITKD---CIIVAHNTVFDYRILRTEFSRLGYDFQAKT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +                     S+ L  L  A GI   N H A+ D  AT
Sbjct: 111 -------LCTVELAKIL----------IPEQPSYSLGKLVRALGIPITNRHRAEGDALAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRN------KNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           + L  ++ +K  +        +         +L  +I+       V+       +     
Sbjct: 154 VKLFKMLLDKDLEKIIVKEQIKTEITKGIAPKLLNIIESLPNKTGVYYIHKENGTIIFIG 213

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
               +        + I  +     +    +   +    L     E + +         ++
Sbjct: 214 KSRNIKKRVNQHFTGITKSALKIQQEVFTVTYQETGSELIALLKETEEIKRNRPIYNRIS 273

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
                    YC+K+      +  ++       +   T+L++      N  +  +SQ    
Sbjct: 274 PKTHFPVAIYCEKDANGYLNLKLQKFDGRKKEITAYTSLQE----GKNNLFRITSQYNLC 329

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           Q   G +         +I       +  +     ++R+ E 
Sbjct: 330 QKLTGLYETKTHCFQQKINECDGACIGKITPQEYNKRVQEF 370


>gi|152975065|ref|YP_001374582.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023817|gb|ABS21587.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cytotoxicus NVH 391-98]
          Length = 929

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 69/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EGGEILEIFSSF---VNPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +     +      +N+ FD  + +    +  Y   
Sbjct: 57  ELTGIDENLVKQAPL-FQDVAPMIVELLQGAS---FVAHNVHFDWNFLKEELKQAGYADI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLTQIEKLPLVTLQ 179


>gi|125624340|ref|YP_001032823.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493148|emb|CAL98112.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071124|gb|ADJ60524.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 277

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 59/193 (30%), Gaps = 25/193 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  +V++D+ET G     +   Q   V+ D   +++                  E   +
Sbjct: 1   MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYV--STEITQL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI P   L    +E E       F       ++  +N  FD  +               
Sbjct: 59  TGIKPADLLNQPTIE-EILPDFLDFIK---GHLVVAHNAPFDISFLYQAIIDC------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                        +         D +    +    +S+ L++      +  + +HDA  D
Sbjct: 108 ------------AITDVEAFRVYDTLAESKKLLTMSSYALENFKDLLEMNDLRSHDALND 155

Query: 181 VYATLALVWLIRE 193
              T  L   +++
Sbjct: 156 CLITAKLYQYLQK 168


>gi|160937823|ref|ZP_02085182.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439262|gb|EDP17015.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC
           BAA-613]
          Length = 245

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 57/204 (27%), Gaps = 28/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MTN ++  D ET G +  LD+  + A +RV       E                     +
Sbjct: 1   MTNSYIALDLETTGLEARLDKITEIAALRV-EDGRVEERFVTL---VNPGRQLGERITAL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT        V+E      I           +  +NI FD  + +     +  D    
Sbjct: 57  TGITDDMVKDAPVIE----DTIGDVVRFCGNLPLLGHNILFDYAFLKRAAVNSGLDF--- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + R                       L        +    AH A+AD
Sbjct: 110 ----EREGIDTLGICRLF-------------MPEDVKRNLTCACSFYEVSQSAAHRAQAD 152

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             A   L  ++  +  +     + 
Sbjct: 153 AEAAHGLYQVMMARHGEEHPEAFA 176


>gi|42525158|ref|NP_970538.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
 gi|39577369|emb|CAE81192.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
          Length = 217

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 29/191 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE-VFFCKPADDYLPDPEAVFITGI 63
           F+ +D ET G    +D+  +   VR           E +F           P A  + GI
Sbjct: 15  FIAFDLETTGTVPGVDQIVEIGAVRF-----IDGQPEAIFATLIDPLRPIPPGASAVNGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +        +++        +F       ++  +N  FD  +      ++       +  
Sbjct: 70  SDDMVKGKPLIDT-ILPAFAEF---CGEDVLVAHNAPFDSQFLIADIKKH------ETTA 119

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R ++              G  ++KL  L     I   N H A+ D   
Sbjct: 120 PRGVILDSLPIARKVF-------------PGLPNYKLGTLVQHLKIPTSNFHRAEEDATY 166

Query: 184 TLALVWLIREK 194
              +   + ++
Sbjct: 167 LGHMFSQMMKR 177


>gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 375

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 47/189 (24%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGSPAEHRITEIGVVEIGP-----GHMSTWTTLVNPGQPIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A  +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DDMVRDAP-SFASLAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGLAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  ++   A               +   L  L    G+     H A AD    
Sbjct: 121 -----DVLCTVKLSRALF----------PRESRHGLDALIERYGLVPAARHRALADADLI 165

Query: 185 LALVWLIRE 193
                 +  
Sbjct: 166 WQFWRQLHT 174


>gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 205

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 26/195 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G +       + A ++V+      E       KP+  ++P+     +TGI
Sbjct: 10  TFTVVDLETTGLNPKTSEIIEIAAIKVEGN-VITEKFHTL-VKPSIGFIPE-HITKLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E    +    F       II  +N +FD  +     ++           
Sbjct: 67  TNPLVIDKPKIE----QVFPHFLEFTKNSIIIAHNAKFDISFLNEASFQL---------T 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               +  ++  +       PD            S  L +LA    I +   H A AD   
Sbjct: 114 GKLIQNPVICTLVLANRLFPDL----------KSKSLTNLAYHFNIPYHRKHRALADAEV 163

Query: 184 TLALVWLIREKKPKL 198
           T  L     E     
Sbjct: 164 TYELFKKFVEYLQNY 178


>gi|189346954|ref|YP_001943483.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
 gi|189341101|gb|ACD90504.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
          Length = 214

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 65/227 (28%), Gaps = 31/227 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           + +  V+ D+ET G      DR  +   V V    E ++  +         +        
Sbjct: 5   LADSVVVLDFETTGLSPQYGDRAIEIGAVLV-EHGEIVDRFQKLM---NPGFRISSFIEG 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            TGIT +        E E       F +  N   I  +N  FD  +      R       
Sbjct: 61  YTGITNEMLKGQPCCE-EVMAEFSGFIAGRN---IVAHNASFDRRFLDFELKRA------ 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAK 178
                               A     +        + + +LQ L    G  E  + H A 
Sbjct: 111 --------------KRVYEGACCCSLLVSRRIYQDSPNHRLQTLVTHAGIPETGSFHRAL 156

Query: 179 ADVYATLALVWLIREKKPKLFEY-LYDYRNKNQLRKLIDIQNMTPLV 224
           AD   T  L   + ++  + +      +   + L K+  +     L 
Sbjct: 157 ADAEMTALLWMSMIDRIRRQYGISAITFDQLSDLSKIDKLYTHRYLT 203


>gi|260655785|ref|ZP_05861254.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
 gi|260629401|gb|EEX47595.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
          Length = 208

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 27/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G         +   ++     +K E                     I GIT
Sbjct: 12  YVALDIETTGLSPRSCSIIEVGALKFVP-GKKGEEFSSL---IDPGCPIPASGRSIHGIT 67

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    VE E    +  F        +  +N  FD  +   +  +        +   
Sbjct: 68  DDMVAGQPRVE-EVIAGLLDFV---GPAPLVLHNAPFDLSFIAPVLDKLGRKWQAMT--- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               +D L + R  +              G  S+ L+ L+     +    H A  D + T
Sbjct: 121 ---VFDTLPLSRVAF-------------PGLRSYSLESLSDFFEFKEGVHHRALCDCWYT 164

Query: 185 LALVWLI 191
             L    
Sbjct: 165 QQLFTRF 171


>gi|304384907|ref|ZP_07367253.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304329101|gb|EFL96321.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 927

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 29/210 (13%)

Query: 1   MTNH-FVIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M    + + D ET G   V   R  Q     ++   +  E+ +    K            
Sbjct: 1   MKKTRYAVVDLETTGTGSVEESRIIQIGCAFIEGD-QITETYQT---KINPQMTIPKRIS 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT Q+  +     A+ + +I+Q  +     +   +N+ FD  +      R+ Y   
Sbjct: 57  RLTGITDQQVRQAPK-FADVADKIYQKLA---GTVFVAHNVNFDFPFLNRELVRSGYPEL 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                        +D +                      ++L+DL     IEH + H A 
Sbjct: 113 ---------DLKAIDTVTLSQVLFS----------RTRGYRLRDLTNYLHIEHDDPHSAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNK 208
           +D  AT  L   I+    +L     +   K
Sbjct: 154 SDAVATAHLFLKIKAALSELPIVTLEQLVK 183


>gi|229058278|ref|ZP_04196665.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH603]
 gi|228720049|gb|EEL71635.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH603]
          Length = 934

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F               
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPLFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDEDLVKQAPL-FRDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEV 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLSEIEKLPLVTLQ 179


>gi|172057786|ref|YP_001814246.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Exiguobacterium sibiricum 255-15]
 gi|171990307|gb|ACB61229.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium
           sibiricum 255-15]
          Length = 937

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 65/206 (31%), Gaps = 28/206 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   FV+ D ET G  +   D   +   V V    +  E    F           P    
Sbjct: 1   MEKKFVVVDLETTGHSIKSGDEMIEIG-VAVIEDGQITERLSAF---VRPQKPIPPFISQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT +   +     A  + R+ Q     +  +   +N++FD  +         Y  Y 
Sbjct: 57  LTGITDEDVAQA-ESFATIAPRVLQLL---DGGVFVAHNVQFDLTFLNEALEEEGYLPY- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D +++ R                  A S  L  L  A  + H  AH A +
Sbjct: 112 -----TGPVIDTVELARI-------------LLPTAESHSLSHLTEALQLTHHEAHRAGS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYDY 205
           D  AT  L+  +  +   L      +
Sbjct: 154 DAEATAELLLHLLTRLQDLPLDTLRH 179


>gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 1517

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/382 (14%), Positives = 98/382 (25%), Gaps = 36/382 (9%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G     D+  +   V++    +  +  +VF      +         +T I  
Sbjct: 493 VVFDIETTGFHPQTDKIIEIGAVKLRE-GKICDRMDVF---VNPEIPIPFRITQLTSIDD 548

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
              + +  +E      + +F S     +I  +N  FD  + R    R             
Sbjct: 549 SMVIGERTIE----ELLPEFLSFCGDAVIVAHNADFDTGFIRENARRLGLSYDPT----- 599

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                ++D +       P   +          FKL  +A   GI  +N H A  D  AT 
Sbjct: 600 -----VVDTVGLSRLLLPKLNR----------FKLDTVAKELGISLLNHHRAVDDAEATA 644

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245
            +         +         +   L          P  H   +         L   ++ 
Sbjct: 645 EIYQKELSLLRERGVKKLSEIDSL-LFDYEANVRKLPSFHCIILAKNDIGRINLYRLISE 703

Query: 246 -HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE----VHLNKC 300
            H +Y         S   R  + L               L+G     +          + 
Sbjct: 704 SHLKYFRKNPKIPKSLLKRYREGLILGSACAAGELFQAILRGAEEEQLLSIASFYDYLEI 763

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
             L    +                  N  +L     L     A  +  Y     D+  ++
Sbjct: 764 QPLGNNAFMLGSDRYSAKSREDLIAYNRKILSLGEQLGKPVCATCDCHYIEPEDDIYRRI 823

Query: 361 YD--GFFADVDRQIMDRILRTA 380
                 F + +         T 
Sbjct: 824 IMAGRGFEEEESDASLYFRNTE 845


>gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941]
 gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 560

 Score = 96.8 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 48/172 (27%), Gaps = 30/172 (17%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G         +   +++ R    ++               +P    +TGIT
Sbjct: 33  YVVFDLETTGSSAREGGITELGALKLVR-GRVVDRFSTL---VNPGRPIEPFVARLTGIT 88

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E   R  +F       ++  +N  FD  +           +       
Sbjct: 89  DEMVSGAP-PAREVIPRFEEF---AEGSVLVAHNAGFDCSFLAAARGGRGLPN------- 137

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                 +LD +R                 G   ++L  L    G+     H 
Sbjct: 138 -----PVLDTLRLARLL----------VPGLRRYRLSALVSHFGVRQAPNHR 174


>gi|300811276|ref|ZP_07091776.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497736|gb|EFK32758.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 290

 Score = 96.8 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 64/187 (34%), Gaps = 30/187 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D ET G +   D+      V+ D           F+     D     + V +T
Sbjct: 123 QKDFVAVDIETTGLNTESDQILSIGAVKHDG--------TEFYRLIKQDIDVPKQIVELT 174

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP    +DGV   +    +  F        I   N RFD  +    + +      +  
Sbjct: 175 GITPAMLDKDGVPLQDVLGELTDFV---GDVPIVGYNFRFDSAFLNREYRKCGMQELKNE 231

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   DLL V++    F  +             +KLQ +    GIE+   H+A +D 
Sbjct: 232 IK------DLLPVVKRKEKFLDN-------------YKLQTVLSNYGIENKVPHNAVSDA 272

Query: 182 YATLALV 188
            AT  L 
Sbjct: 273 RATKELA 279


>gi|293189820|ref|ZP_06608534.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
 gi|292821235|gb|EFF80180.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
          Length = 540

 Score = 96.8 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 52/188 (27%), Gaps = 25/188 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G         +   VR+ R    ++                P    +TGITP
Sbjct: 20  VVVDLETTGLGAG-AEITEIGAVRI-RDGAVVDEFSSL---VKPSRPIPPFITSLTGITP 74

Query: 66  QKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                     A       ++      ++ ++  +N  FD  + R           R    
Sbjct: 75  AMVADAD-PIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPR---- 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R                    + KL  +A   G   V  H A  D  A
Sbjct: 130 --VRVVDTLALAR-----------LALPRPLVRNHKLGTVASYFGTATVPEHRALGDARA 176

Query: 184 TLALVWLI 191
           T  ++   
Sbjct: 177 TAEILLGF 184


>gi|229102245|ref|ZP_04232954.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-28]
 gi|228681146|gb|EEL35314.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-28]
          Length = 934

 Score = 96.8 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F               
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPVFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|226356768|ref|YP_002786508.1| DNA polymerase III subunit epsilon [Deinococcus deserti VCD115]
 gi|226318758|gb|ACO46754.1| putative DNA-directed DNA polymerase (DNA polymerase III, epsilon
           subunit) [Deinococcus deserti VCD115]
          Length = 202

 Score = 96.8 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 33/193 (17%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--STEVFFCKPAD---DYLPDP-EA 57
           + V++D ET G     D   +   +RV    +  E    E    +P +   + L  P  A
Sbjct: 2   NVVVFDLETTGLSPERDGIVEIGALRV-VNGQVHEHLRYETL-VRPTNAAGERLMIPWHA 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             + GI+ +       +E E      +F        +  +N+ FD  + R    R     
Sbjct: 60  QRVHGISNEMVRSAPTIE-EVLPEFLEFV---GDSAVVAHNVGFDCGFMRAQARRLGM-- 113

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAH 175
                            + A                   +  L  LA   G+       H
Sbjct: 114 -----------------VWAPAGEHCTVQLSRRAFPKERAHNLTVLAERLGLNFAPGGRH 156

Query: 176 DAKADVYATLALV 188
            +  DV  T    
Sbjct: 157 RSFGDVQVTAHAY 169


>gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 597

 Score = 96.4 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 50/188 (26%), Gaps = 22/188 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F++ D ET G    L    +   V+V R    I                      +TGI
Sbjct: 46  TFLVVDVETTGEKPGLHSLTEIGAVKV-RGGTVIGEFGSL---VNPGVPIPAFITRLTGI 101

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E      +F       I   +N  FD    R                
Sbjct: 102 TTGMVATAP-SLGEVLVSFIEFVGGDPDLIFVAHNAPFDMGQLRGAASALGLAFP----- 155

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + + R ++             D   + KL  LA         +H A  D  A
Sbjct: 156 -NRKVIDTVKLSRRVF-----------MKDEVPNHKLSTLARFVNATISPSHRALDDARA 203

Query: 184 TLALVWLI 191
           T+ ++  I
Sbjct: 204 TVDVLHAI 211


>gi|228982633|ref|ZP_04142892.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407]
 gi|228776816|gb|EEM25124.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407]
          Length = 286

 Score = 96.4 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 95/308 (30%), Gaps = 40/308 (12%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N+FV+ D ET         R  +   V+     + ++           +         +T
Sbjct: 17  NNFVVLDIETTAFSPVKGGRITEIGAVKY-IDGKVVDKYSQL---INPEMKIPANITKLT 72

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT        V   +      QF    +  ++  +N +FD          N +  + + 
Sbjct: 73  GITNDMVQGKPV-YGQVLPVFQQFI---DGFLVVAHNAKFD---------WNRFLLFYFE 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               + + ++LD +     F P+  +          +KL D     G  + N H A  D 
Sbjct: 120 KVGIHPKNEVLDSVAVFQHFCPNKGK----------YKLDDFCTTFGYLNKNRHRAYEDA 169

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT   +  ++ +       + +   K  ++ +         V     +    S+T L  
Sbjct: 170 EATGYCLLELKRRFASEIPEVEEEPIK--VQSVQKSSQPEIFVKRVKYWEKKVSSTKL-- 225

Query: 242 PVAWHPRYKDSVIGCNLSGDM-RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
                   K   +  N       V+ D+ +       +    + + +    ++ ++LN  
Sbjct: 226 -------MKRQYVNINDKKKYGTVYFDIPTKTWYNNNYPGEVDFEVVNEKVLRFLNLNST 278

Query: 301 PILMPIDY 308
             L     
Sbjct: 279 IELCSFKN 286


>gi|188995649|ref|YP_001929901.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
           ATCC 33277]
 gi|188595329|dbj|BAG34304.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
           ATCC 33277]
          Length = 259

 Score = 96.4 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 62/205 (30%), Gaps = 27/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  + +D ET G D+  DR  + + ++V     +    E    +   +    PE+  I
Sbjct: 5   LKNPLIFFDLETTGVDLVRDRIVEISILKVMPDGSE----ECKTRRINPERSIPPESTAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +            ++ + Q+       + G+N+ RFD       F R   D    
Sbjct: 61  HGITDEDVKDCP-PFRSVAKSLAQWIE--GCDLAGFNSTRFDVPMLVEEFLRAGVDIDLR 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+  +                                      NAH A+AD
Sbjct: 118 HRKL----IDVQTIFH----------------KMEPRTLEAATRFYCNRTLENAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205
             AT  +     ++     E    +
Sbjct: 158 TRATYDVFKAQLDRYEGTLENDMAF 182


>gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
 gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
          Length = 318

 Score = 96.4 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 13  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERSIPDRITSLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++          +     
Sbjct: 69  NYRVSDAPTIE-EVLPLFLAFL---HTNVIIAHNASFDMRFLKSNVSMLGLPEPQN---- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 121 --KVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 164

Query: 185 LALVWLI 191
            A+    
Sbjct: 165 AAVYQKC 171


>gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
 gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
          Length = 314

 Score = 96.4 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 29/220 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V+ D ET G   + D   + + +R+     +++ T     +P            +T
Sbjct: 22  PKDYVMIDIETTGLKPSNDEILELSAIRIRDH--QMDRTFSTLVQPN--RPISGFITNLT 77

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+    +    +E +       F       I+GYN      +          +      
Sbjct: 78  GISNHMVMTAPPIE-QAIPEFLDFIQED--IILGYNVNFDLSFIYDTAVNLYNFP----- 129

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D LDV+        +            + KL  +A   GI +  AH    D 
Sbjct: 130 -----VRNDYLDVLTIARKLVTE----------TPNHKLGTMAQFYGISYEGAHRGLTDC 174

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           Y T+ +   +  +  ++++   +   KN   +    + + 
Sbjct: 175 YITVEVYNQLFNQAKQVYQS--EQDFKNDFYRRAYPKQIK 212


>gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 769

 Score = 96.4 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 27/186 (14%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + ++D ET G + +  D   Q    R+    + +   E F      +    PE+  I G
Sbjct: 578 SYTVFDTETTGLNPSQGDEIIQVGATRI-LNGKLL-RAESFEQLVDPERPLAPESAKIHG 635

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       ++ +     H F +     ++  +N  FD  +             +   
Sbjct: 636 ITSEMLRGQPTID-KVLPAFHAFAAD---TVLIAHNAAFDMRFL----------QLKEEQ 681

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   ++D +                     S +L+ +A   G+  V  H A  D  
Sbjct: 682 TGLRFDHPVIDTLLLSAVV----------HPNQESHRLEAIAERLGLTIVGRHTALGDAI 731

Query: 183 ATLALV 188
            T  + 
Sbjct: 732 VTAEVF 737


>gi|229166488|ref|ZP_04294244.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH621]
 gi|228617062|gb|EEK74131.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH621]
          Length = 934

 Score = 96.4 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F               
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPLFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDEDLVKQAPL-FRDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEV 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLSEIEKLPLVTLQ 179


>gi|229096133|ref|ZP_04227106.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-29]
 gi|229115089|ref|ZP_04244499.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-3]
 gi|228668229|gb|EEL23661.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-3]
 gi|228687093|gb|EEL40998.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-29]
          Length = 934

 Score = 96.4 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F               
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---VNPKREIPVFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDESLVKQAPL-FQDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKKHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQ 179


>gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
 gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
          Length = 702

 Score = 96.4 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 56/201 (27%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           H+V++D ET G   +  D   Q A VR+            F           PE++   G
Sbjct: 508 HYVVFDTETTGLSPSAGDEIVQIAAVRIVGGRILTGE--TFNMLVDPKRPIPPESIPFHG 565

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++     +   F S     ++  +N  FD  + +               
Sbjct: 566 ITDAMVAGKPTIDT-VLPQFRSFVS---GAVLVAHNAAFDLKFLK-------MKERAAGV 614

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D + + R                       L  +A   GI  V+ H A  D  
Sbjct: 615 TFDCPVLDTMLLSRM-------------LLGNDGDHTLDGIAQRLGIAVVDRHTALGDSL 661

Query: 183 ATLALVWLIREKKPKLFEYLY 203
            T A+   + E          
Sbjct: 662 VTAAVFLRMIEMLRDQGVRTL 682


>gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes]
          Length = 1465

 Score = 96.4 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/399 (11%), Positives = 93/399 (23%), Gaps = 36/399 (9%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     +   Q A  ++  +   +E  + F       +        +TGIT +  
Sbjct: 431 DVETTGLSAMNNDLIQIAASKM-FKGNIVEQFDEF---IDPGHPLSAFTTELTGITDKHL 486

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
                      +    F       I+  +N  FD  +    + R+               
Sbjct: 487 QGA-KPLVTVLKAFQDF---CKDSILVAHNASFDVGFMNANYERHDLP------KITQPV 536

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            D L+  R +Y                    L  L     +   + H A  D  AT  L+
Sbjct: 537 IDTLEFARNLY-------------PEYKRHGLGPLTKRFQVSLDHHHMANYDAEATGRLL 583

Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
           ++  +   +        +    L      +          +                + +
Sbjct: 584 FIFLKDAREKHGIKNLLQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVSLSNIK 643

Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDY 308
           Y + V     +      + L               L   +   +          +MP   
Sbjct: 644 YFEGVPRIPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEIMPPAI 703

Query: 309 CKKEHFERWGIDHKRCLENLTLL------RQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            +         D     + +  L       ++  L                + +   L  
Sbjct: 704 YQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYREIIVRSLGQ 763

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
           G   +      +         L   +   ++  L E  F
Sbjct: 764 GAMINRTIGRGEGAQPAP---LPKAHFRTTNEMLDEFAF 799


>gi|15887364|ref|NP_353045.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str.
           C58]
 gi|15154863|gb|AAK85830.1| DNA polymerase III, epsilon chain [Agrobacterium tumefaciens str.
           C58]
          Length = 232

 Score = 96.4 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 63/188 (33%), Gaps = 27/188 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G +  LDR  +  G+ +   +     T   +  P +D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLESKLDRVIEIGGIELINHF-PTGRTLHLYISP-EDRKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         AE   +I +FF   +      +N  FD  +    F R   +         
Sbjct: 62  EFLKDKPK-FAEVIDQIREFF---DGARWVAHNATFDMGFINAEFARLGIEPVSAE---- 113

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R      P+               L  L    GI+  H   H A  D   
Sbjct: 114 -LVTDTLSLARRKNPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158

Query: 184 TLALVWLI 191
              +   +
Sbjct: 159 LAEVYIEM 166


>gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH
           391-98]
          Length = 299

 Score = 96.4 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 64/201 (31%), Gaps = 28/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++V+ D+ET G     DR  Q A VR  R  E  +    F      +         +TGI
Sbjct: 9   NYVVIDFETTGFHPYNDRIIQVAAVRY-RNHELADQFVSF---VNPERSIPSRITSLTGI 64

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +      V  E       F        I  +N  FD  + ++   R         + 
Sbjct: 65  TNYRVSDAPTV-QEVLPLFLAFL---GNDTIVAHNASFDMRFLKSNMSR---------FQ 111

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G     ++D +     +             A +FKL+ L    GI    +H+A  D   
Sbjct: 112 LGEPNNKVIDTVLLAKKY----------MKHAPNFKLETLKRMLGIRLS-SHNALDDCIT 160

Query: 184 TLALVWLIREKKPKLFEYLYD 204
             A+       +    + L  
Sbjct: 161 CAAVYQQCANMQGDGRKSLKK 181


>gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 659

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 52/188 (27%), Gaps = 29/188 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G D   DR  Q AG+R+ R     E  +             P +  + GIT 
Sbjct: 454 VVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTL---VDPGRPIPPASTAVHGITD 510

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      + +  +  F       ++  +N  FD  + R                  
Sbjct: 511 AMVAGAP----DMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAV----------PETGA 556

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVYA 183
           +    +LD +                        L  L    G  I     H A  D  A
Sbjct: 557 HFDNQVLDTVLLSAMLWGQSAP----------HSLDALTERLGIVIPPEARHTAMGDARA 606

Query: 184 TLALVWLI 191
           T      +
Sbjct: 607 TAEAYLRL 614


>gi|194015490|ref|ZP_03054106.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061]
 gi|194012894|gb|EDW22460.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061]
          Length = 240

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 59/206 (28%), Gaps = 36/206 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVD-----RQWEKIESTEVFFCKPADDYLPDPE 56
              +V+ D ET G D   D+  +   +++      R++E++           +       
Sbjct: 3   PQTYVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHT-MVALEEGRDLPEF 61

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TGIT +        E +    +  F       I+   N  FD  +           
Sbjct: 62  ITNLTGITEEDLEDAPE-EWDALDELQNFI---GDAIVVAQNAPFDLSFI---------- 107

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                     SR D+                     +   S  L+D+    GI     H 
Sbjct: 108 ----------SRGDIEP------ERFYCTRAMARFVEPELSASLKDVTKRIGISLDGHHR 151

Query: 177 AKADVYATLALVWLIREKKPKLFEYL 202
           A  DV AT+ +      +    +   
Sbjct: 152 ALNDVEATIEVFRRYLPRVVDEYNDF 177


>gi|332995649|gb|AEF05704.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
          Length = 710

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 28/172 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G + + +R  +   V++    E +++ +                  +TGI+
Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKI-VAGEVVDTYQTL---INPQRRIPATITRLTGIS 598

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   E + RI  F       +   +N+ FD  + +  F R      R     
Sbjct: 599 DDMVADAPL-FVEVAERIASFTDE---AVFVAHNVNFDYGFIKQEFARLELPFKR----- 649

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  L  +R +             + G  S+ L +L     I+    H 
Sbjct: 650 -----PKLCTVREMRKV----------NPGLPSYSLANLTRHFDIKMEQHHR 686


>gi|269219422|ref|ZP_06163276.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211118|gb|EEZ77458.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 206

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 56/204 (27%), Gaps = 27/204 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR  +   V +D   E     +     P         AVF+ G+T
Sbjct: 3   YAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSL-VNPLRGM----GAVFVHGLT 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+   +I   FS      +  +N  FD  +    F R  Y         
Sbjct: 58  DADVADAP-TLADLLPQIRGLFS---GRALVAHNATFDVGFLNASFARAGYG-------- 105

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                     M      +   ++            L   A   G+     H A AD +  
Sbjct: 106 ----------MHVPREATVCTMELSKIYLPPGRHGLAAAAERAGVATAKRHRALADAHTA 155

Query: 185 LALVWLIREKKPKLFEYLYDYRNK 208
             L+      +     Y     ++
Sbjct: 156 AGLLRHYLNAEADGVRYAERAFSR 179


>gi|120435022|ref|YP_860708.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117577172|emb|CAL65641.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 457

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 28/191 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D Q + ++           +    P  V +TGI 
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIYKFDGQ-KVVDQFISL---VNPEQPIQPFVVNLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E ++RI +       CI+  +N +FD    R  F R  ++        
Sbjct: 58  NDMLKNAPK-FYEVAKRIVEITED---CILVAHNAKFDYRILRTEFRRLGFE-------- 105

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                        G  S+ L  L  + GI   + H A  D  AT
Sbjct: 106 ------------YERKSLCTVELSKKLIPGLPSYSLGKLVRSLGIPLSDRHRAAGDAQAT 153

Query: 185 LALVWLIREKK 195
           + L  ++  K 
Sbjct: 154 IKLFKMLLAKD 164


>gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
          Length = 231

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 75/252 (29%), Gaps = 27/252 (10%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     D   + AGV++ +  E I+  E F       +      + +TGIT    
Sbjct: 1   DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
                +E      + +F       I+  +N  FD  +    + +             N+ 
Sbjct: 57  KGSDPIEV----VLQRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------KAKNAV 106

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            D L++ R +Y                 + +L  L     I     H A  D  AT  L 
Sbjct: 107 VDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLA 153

Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
           W + +   ++ +  Y     + + +    +   P         A             +  
Sbjct: 154 WKLIKDAKEMHDIEYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNIN 213

Query: 249 YKDSVIGCNLSG 260
           Y   V     S 
Sbjct: 214 YFYRVPRIPRSQ 225


>gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI]
 gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
           anthracis str. CI]
          Length = 315

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++          +     
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEPQN---- 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 118 --KVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLI 191
            A+    
Sbjct: 162 AAVYQKC 168


>gi|325983091|ref|YP_004295493.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
 gi|325532610|gb|ADZ27331.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
          Length = 463

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 53/190 (27%), Gaps = 28/190 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G     DR  +   +R      +                  P    +TGIT
Sbjct: 8   YVLLDLETTGVTPTQDRITEIGLIRY-ENGVETGRWNTL---INPGINIPPFIQRLTGIT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      ++    + Q+       ++  +N RFD  + +N F R            
Sbjct: 64  QDMVDHAP-TFSQVYETLLQWLDQ---AVLCAHNARFDYGFLKNEFKRIGV--------- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +  LL  ++      P             S  L  +     +     H A  D    
Sbjct: 111 -TFQKKLLCTVKLSRKLYPQHH----------SHSLNAIIERFRLICDQRHRAMGDTEMI 159

Query: 185 LALVWLIREK 194
            A + +   +
Sbjct: 160 AAFIDVAMRE 169


>gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501]
 gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata
           HTCC2501]
          Length = 1453

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 65/202 (32%), Gaps = 22/202 (10%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D +   +E  +    +P    +P 
Sbjct: 2   YLIFDTETTGLPKRWDAPASDTDNWPRCIQIAWQLHDGEGRLVEQYDAL-VRPDGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+   A  +G+   E         S   T  +   N+ FD       FYR  
Sbjct: 61  -DAEQIHGISTDLAREEGLPLEEVLEAFRGALSR--TQFLVGQNVGFDINVMGAEFYRVA 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +       +   ++ +LD      A                +     L    G     A
Sbjct: 118 DE-------DPLEKFPVLDTCTESTAELCQLPGGRGGKFKLPTLTELHL-HLFGEPFEEA 169

Query: 175 HDAKADVYATLALVWLIREKKP 196
           H+A ADV AT      +  ++ 
Sbjct: 170 HNATADVEATARCFLELLRRRQ 191


>gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
 gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
          Length = 870

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 84/209 (40%), Gaps = 26/209 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             + +++D E+ G DV  D   Q A ++++++ E ++  E F            ++ ++ 
Sbjct: 501 KENIIVFDVESTGVDVIEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPVK----DSYYVH 556

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G + +   + G  + +  +   ++     + I+G+N     +     +   N       +
Sbjct: 557 GFSDEMLQKIGEDKEKVLKEFVEY--SKGSIIVGHNVQYDINILCSELERSNLGKPKFKT 614

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      +D LD+ R  Y              G  ++KL++L+     +H  +HDA  D+
Sbjct: 615 F------YDTLDIYRRFY-------------PGNINYKLENLSNVYDTKHKPSHDAMDDI 655

Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209
            AT  L+   I EK  +         +K+
Sbjct: 656 IATGELLVRAINEKIRETSMERMALMSKH 684


>gi|299821667|ref|ZP_07053555.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
 gi|299817332|gb|EFI84568.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
          Length = 929

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 28/185 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +++ D ET G      DR  QFA   V    +++E+   F      +    P    +T
Sbjct: 6   KRYLVVDLETTGNQANRHDRIIQFAATLV-EGSKRLETYSTF---INPEREIPPFIQQLT 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P        +  + +  I         CI   +N+ FD  +      R  Y   +  
Sbjct: 62  GIKPSDCYDAP-IFTDVAPIIQNLLED---CIFVAHNVSFDWTFLAREMQRAGYPLPKT- 116

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 + D +++ R IY              G  S+KLQDL+    + H   H A +D 
Sbjct: 117 -----KKLDTVELARIIY-------------PGIDSYKLQDLSDEFKLGHDRPHQADSDA 158

Query: 182 YATLA 186
             T  
Sbjct: 159 EVTAD 163


>gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 470

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 33/203 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFITG 62
           FV++D ET G     D   Q   VRV  +   +  E  +             P +  +  
Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRV-VKGRIVEGEQFDTL---VNPGIPIPPASTRVHK 333

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ++ +          +      QF       +I  +N  FD  + R    R   +      
Sbjct: 334 VSDRMVQDAP----DIITAGRQFHHFARDAVIVAHNAPFDMAFLRRHAKRMEVEW----- 384

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKAD 180
                   +LD +                   + +  L  L    GIE      H A  D
Sbjct: 385 -----DHPILDTVLLSAVLF----------GASETHTLDALCDRLGIEIPETLRHTALGD 429

Query: 181 VYATLA-LVWLIREKKPKLFEYL 202
             AT   LV ++   + +  +  
Sbjct: 430 AVATAEALVRMLPMLQARGMKTF 452


>gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 876

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 86/209 (41%), Gaps = 26/209 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             + +++D E+ G DV  D   Q A ++++++ E ++  E F            ++ ++ 
Sbjct: 507 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPVK----DSYYVH 562

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G + +   R G  + +  +   +F       II  +N+++D     +   RN     ++ 
Sbjct: 563 GFSDEMLQRIGEDKEKVLK---EFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK 619

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                + +D LD+ R  Y              G  ++KL++L+     +H  +HDA  D+
Sbjct: 620 -----TFYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 661

Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209
            AT  L+   I EK            +K+
Sbjct: 662 IATGELLVRAINEKIIPTSMERMALMSKH 690


>gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 870

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 87/209 (41%), Gaps = 26/209 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             + +++D E+ G DV  D   Q A ++++++ E ++  E F            ++ ++ 
Sbjct: 501 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPVK----DSYYVH 556

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G + +   R G  + +  +   +F       II  +N+++D     +   RN     ++ 
Sbjct: 557 GFSDEMLQRIGEDKEKVLK---EFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK 613

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                + +D LD+ R  Y              G  ++KL++L+     +H  +HDA  D+
Sbjct: 614 -----TFYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 655

Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209
            AT  L+   I EK  +         +K+
Sbjct: 656 IATGELLVRAINEKIKETSMERMALMSKH 684


>gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
 gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str.
           13]
          Length = 870

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 106/300 (35%), Gaps = 30/300 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             + +++D E+ G DV  D   Q A ++++++ E ++  E F            ++ ++ 
Sbjct: 501 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPVK----DSYYVH 556

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G + +   R G  + +  +   ++    ++ I+G+N     +     +   N       +
Sbjct: 557 GFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKT 614

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      +D LD+ R  Y              G  ++KL++L+     +H  +HDA  D+
Sbjct: 615 F------YDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 655

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT  L+     +K +             L+    I      +       + R    L+A
Sbjct: 656 IATGELLVRAINEKIRETSMERMTLMSKHLKAFTAISKKLNELFQIAE--SKRPY-ELVA 712

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
            V      K    G      +   +DL    L + L       +  +   I+   L+   
Sbjct: 713 CVMNGFNIKSMYAGDENKEKLNRLRDL--YALFRDLDDKSKGNRDALLDIIRITGLSNGE 770


>gi|116511811|ref|YP_809027.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116107465|gb|ABJ72605.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 277

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 59/193 (30%), Gaps = 25/193 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  +V++D+ET G     +   Q   V+ D   +++                  E   +
Sbjct: 1   MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYV--STEITQL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI P   L    +E E       F       ++  +N  FD  +               
Sbjct: 59  TGIKPADLLNQPTIE-EILPDFLDFIK---GHLLVAHNAPFDISFLYQAIIDC------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                        +         D +    +    +S+ L++      +  + +HDA  D
Sbjct: 108 ------------AITDVEAFRVYDTLAESKKLLTMSSYALENFKDLLEMNDLRSHDALND 155

Query: 181 VYATLALVWLIRE 193
              T  L   +++
Sbjct: 156 CLITAKLYQYLQK 168


>gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
 gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
          Length = 1442

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 62/206 (30%), Gaps = 26/206 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V+YD ET G +   +   +   +++ +    ++                 +   +TG
Sbjct: 413 ETYVVYDLETMGLNSHENEIIEIGAIKL-KGTRIVDKYSQL---INPGKSIPSKIQELTG 468

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT      +  +E      +  F        +  +N RFD  +      +     Y    
Sbjct: 469 ITDDMVKDEPSIE----EVLPGFLEFAGDATLVAHNARFDIGFLTRDVKK-----YTNIK 519

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           D   S  D L   R                     + L+ +    G+   N H A  D  
Sbjct: 520 DYKPSVIDTLQWAR-------------DLLPDLRGYGLKSVTKKLGVALENHHRAVDDSQ 566

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208
           AT  +  +  EK  +      +  +K
Sbjct: 567 ATAHMFAIFLEKFIEEGAVKLNELDK 592


>gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
 gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
          Length = 532

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 54/192 (28%), Gaps = 29/192 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++   V  D ET G D   DR  +   V V          E             P    +
Sbjct: 29  LSRPIVFVDLETTGADAQRDRITEIGVVEVGPDGIV--EWETL---LDPGMSIPPFIQRM 83

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E+  +  + +        +   +N RFD  + +N F R        
Sbjct: 84  TGISDDMVRGQPTFES-LAESLAERLQ---GRLFVAHNARFDYGFLKNAFRRAGV----- 134

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R D+L  +R   +  P   +            L  L    G+     H A AD
Sbjct: 135 -----TFRADVLCTVRLSRSLFPSVER----------HGLDALIARFGLTPKGRHRALAD 179

Query: 181 VYATLALVWLIR 192
                     I 
Sbjct: 180 AELLWQFWQKIH 191


>gi|56475526|ref|YP_157115.1| exonuclease [Aromatoleum aromaticum EbN1]
 gi|56311569|emb|CAI06214.1| conserved hypothetical protein, possibly exonuclease [Aromatoleum
           aromaticum EbN1]
          Length = 642

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 27/186 (14%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + ++D ET G D +  D   Q    R+     K+   E F      +    PE+V I G
Sbjct: 451 TYTVFDTETTGLDPSKGDEIIQIGATRIVNS--KLLRQESFEQLIDPERGVSPESVKIHG 508

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITP             +R +  F +     ++  +N  FD  + +               
Sbjct: 509 ITPDMLAGQPT----IARVLPAFHAFAQDTVLIAHNAAFDMRFLQ--------------- 549

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  + +  +R         +          S +L+ +A    +  +  H A  D  
Sbjct: 550 -----LKETMTGLRFDQPVLDTLLLSAVVHPNQESHRLEAIAERLNLTIIGRHTALGDAI 604

Query: 183 ATLALV 188
            T  ++
Sbjct: 605 VTAEVL 610


>gi|320531410|ref|ZP_08032377.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320136382|gb|EFW28363.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 299

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 58/205 (28%), Gaps = 29/205 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V R  + +                  +   +TGI
Sbjct: 21  TFVVVDLETTGGAPGARSLTEIGAVKV-RGGQVLADFSTL---VNPGVAIPAQITMLTGI 76

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           T              S  +  F S      +  ++  +N RFD  + R        +   
Sbjct: 77  TNAMVAGAPG----VSTCVEAFLSWADLLADDVVLVAHNARFDVGHLRGAAAALGLEWPE 132

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D L + R  +                 + KL  LA   G     +H A  
Sbjct: 133 ------PRVLDTLALARKAWT-----------RSEVPNHKLGTLAAFVGSRTRPSHRALD 175

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D  AT+ ++    E    L     +
Sbjct: 176 DARATVDVLHAALEVMAPLGVTHLE 200


>gi|68535798|ref|YP_250503.1| putative exonuclease [Corynebacterium jeikeium K411]
 gi|68263397|emb|CAI36885.1| putative exonuclease [Corynebacterium jeikeium K411]
          Length = 198

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 63/198 (31%), Gaps = 27/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G     +R  + A + + R  E  +           +     E   +TGI+ 
Sbjct: 13  IVIDLETTGLRPQEERIIEIAALHI-RNGELQDKYTTL---LNPNLSVPQEITDLTGISD 68

Query: 66  QKALRDGVVEAEFSRRIHQFFSVP------------NTCIIGYNNIRFDDYYSRNIFYRN 113
                     +E    +  F                +T  +  +N+ FD  + ++   R 
Sbjct: 69  GLLADKP-TFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRT 127

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
              +  ++      R             + +  +     +    ++L ++A    + H  
Sbjct: 128 QLKNSAYANRPYTPRL----------VCTAEASRTLIPRESVGRYRLGNVASYLKVPHRP 177

Query: 174 AHDAKADVYATLALVWLI 191
            H A +D  AT  ++  +
Sbjct: 178 LHRAMSDALATYDVLRAL 195


>gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
 gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
          Length = 821

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 86/269 (31%), Gaps = 30/269 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +++  V++D ET G D  ++   +   V++    + I+  +VF                +
Sbjct: 514 LSSTTVVFDLETTGFDPRVNHIIEIGAVKI-ENGKIIDRMDVF---VNPGVPIPFRITQL 569

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T I     +    +E      + QF       I+  +N  FD ++               
Sbjct: 570 TSIDDSMVMDAKGIE----EVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIP---- 621

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     ++D +       P   +          FKL  +A    IE ++ H A  D
Sbjct: 622 ------FSAPVIDTVALSRLLLPRLNR----------FKLDTVAKELKIELLHHHRAVDD 665

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  +     E   +      +  +  ++ ++  ++ + P  H+  +         L 
Sbjct: 666 AEATARIYLKELEILEQRGVSSLEEIDSLEVDQVGKVRKL-PSYHIILLAKNDIGRINLY 724

Query: 241 APVAW-HPRYKDSVIGCNLSGDMRVFQDL 268
             V+  H +Y         S   +  + L
Sbjct: 725 RLVSQSHLQYFRMKPRIPKSLLKKYREGL 753


>gi|218289182|ref|ZP_03493418.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240765|gb|EED07944.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 952

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 27/192 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D+ET G +       +   +RV R  E +++          +     E   +TG++ 
Sbjct: 4   IIVDFETTGLEPERAEILEIGALRV-RGGEIVDTFHTL---VRPERPIPDEITRLTGLSD 59

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                    E E   R   F    +T + G++            F R+F       +   
Sbjct: 60  TDVAGAP-SEREALMRFATF--AGDTPMAGHH----------WAFERSFLRDRASRYGLP 106

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D L  +      +P  +          S +L+ LA    +    +H A AD +   
Sbjct: 107 LQPGDGLCTLNLARILAPRLM----------SHRLEYLARRLCLRAEISHRALADAHTAH 156

Query: 186 ALVWLIREKKPK 197
            L+  +  K  +
Sbjct: 157 QLLMRLENKARR 168


>gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187]
 gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1]
 gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
 gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH187]
 gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
 gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
          Length = 315

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++          +     
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEPQN---- 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 118 --KVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPK 197
            A+       + +
Sbjct: 162 AAVYQKCAFIEEE 174


>gi|51893409|ref|YP_076100.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857098|dbj|BAD41256.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 390

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 25/198 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M  + V+ D ET G +    R  Q   V +  Q   +++ E        +      A+ +
Sbjct: 20  MRYNLVVIDTETTGLEYDQHRIIQIGVVAIKEQ-RIVKTWESKLRLIDGEV--SAYAMQV 76

Query: 61  TGITPQKALRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
             + P     +     +   R++ + F  P   ++G +N+ FD  + +  F R+    ++
Sbjct: 77  NRLDPSDMRSEKYPHPKAVLRKLQEEFLRPG-VLLGAHNLSFDLGFLQAEFARHGLPQWQ 135

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     + +D M    A  PD            S  L+ LA    +E    HDA A
Sbjct: 136 ---------GNFVDSMALGRALLPDL-----------SASLESLARHFRVELTQHHDALA 175

Query: 180 DVYATLALVWLIREKKPK 197
           D  AT  ++  + +   +
Sbjct: 176 DAVATAHVLLHLLDLAQQ 193


>gi|258511618|ref|YP_003185052.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478344|gb|ACV58663.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 952

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 27/192 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G D       +   +RV R  E +++          +     E   +TG++ 
Sbjct: 4   IIVDLETTGLDPERAEILEIGALRV-RGGEIVDTFHTL---VRPERPIPDEITRLTGLSD 59

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                    E E   R   F        +  ++  F+  +  +   R             
Sbjct: 60  ADVAGAP-SEREALMRFAGF---AGHTPMAGHHWVFERSFLLHRVARYGLPLQP------ 109

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D L  +      +P  +          S +L+ LA    +    +H A AD     
Sbjct: 110 ---GDGLCTLSLARILAPRLM----------SHRLEYLARRLRLRAEVSHRALADARTAH 156

Query: 186 ALVWLIREKKPK 197
            L+  + EK  +
Sbjct: 157 QLLMRLEEKARR 168


>gi|229822935|ref|ZP_04449005.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271]
 gi|229787748|gb|EEP23862.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271]
          Length = 828

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 72/242 (29%), Gaps = 37/242 (15%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             + D ET G  +   D+  Q   V +    + +    +       +         ITGI
Sbjct: 8   IAVVDLETTGSHLDQGDQIIQIGAVLI-EDGQVLAQHSML---LNPERNIPTHITAITGI 63

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
              +        ++ +   ++       C    +N+ FD  + +  F     D       
Sbjct: 64  QSDQVQDAP-TFSQVAGLWYERLKD---CFFVAHNLGFDLTFLQAKFAEQGLDFQP---- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   LD ++    F             A  F LQDL+   G+   +AHDA  D   
Sbjct: 116 ------PALDTVQLAKIFL----------PQAPGFNLQDLSQFFGLNFQDAHDALGDARM 159

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+ ++  +         DY  K     L  I    P      +  AS     +  P 
Sbjct: 160 TAHLLDVLAHQAAD-----LDYGTK---LALQPIFKALPYQASQFLNQASSFYCQVNWPE 211

Query: 244 AW 245
             
Sbjct: 212 GQ 213


>gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
           extructa W1219]
 gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
           extructa W1219]
          Length = 1442

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/418 (12%), Positives = 110/418 (26%), Gaps = 50/418 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   +F  V++ +   +++S ++F                 T I
Sbjct: 392 TYVVFDLETTGLSAKYDYMIEFGAVKI-KNGLRLDSKQLF---IKPPISIPAFIEKKTNI 447

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +         +E    +  +       ++  +N  FD  +      R           
Sbjct: 448 SNEMVRNA-KSFSEVVDELLAYI---GDAVLVAHNASFDFPFLNEELRRLSRKPL----- 498

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181
             N   D LD+ RAI                 + F L+ ++          +AH A  D 
Sbjct: 499 -TNPVIDTLDMARAI-------------LSDRSRFALEYVSNHYKLNYSRSDAHRADYDA 544

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP-LVHVSGMFGASRSNTALI 240
                    +     + F+       ++++    D + M      V     A       +
Sbjct: 545 NILADAFEHLLVDAKRQFQVETIRDLQDKVHTDSDFKRMFSKHAIVIAKNQAGLKVLYDL 604

Query: 241 APVA----------WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290
             ++                        S   +  Q+L                 G    
Sbjct: 605 VSISNTETLAVKTKNEGSNAIGEPRIKRSTLQKYRQNLLVGSACLNGEVFEMACNGDDDR 664

Query: 291 PIKEVHLNKCPILMP-------IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA 343
             K +       L P       ++     +  R     +R +     L            
Sbjct: 665 LKKTMAFYDYIELQPLGNYSTSLELGSLPNLARLKEVQQRMIAMAHELELPILATSDCHY 724

Query: 344 IYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
              +        + ++   G  A       ++I R+ P      +L  +D  + E  +
Sbjct: 725 CKQEEKIFRDIYITAK-GVGGIAHPLYIRNEQIRRSHPN--PDQHLRLTDEMIKEFSW 779


>gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
          Length = 861

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 67/190 (35%), Gaps = 25/190 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+YD E+ G D   DR  Q A +R+D+   +IE  E F             +  + G T 
Sbjct: 495 VVYDVESTGTDTTEDRIVQIAAMRIDKDGNEIERFERF---INPGKSVG-TSQLVHGFTD 550

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                 G           +F    N  II  +N+ +D     +   R+     ++     
Sbjct: 551 AYLAEHGESPKVVLEAFKEF---SNNRIIVGHNVNYDISILSHELARHNLGEPQFK---- 603

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +D LD+ R  Y    +              KL  L+    I H   H+A  D+ AT 
Sbjct: 604 -AVYDTLDIFRRFYPTLEN-------------HKLGFLSKYFPINHTPTHNAMDDIIATG 649

Query: 186 ALVWLIREKK 195
            L+     + 
Sbjct: 650 QLLIYAVREN 659


>gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 328

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 73/219 (33%), Gaps = 30/219 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +  + + D+ET G + A  DR  +   V V       +  E    +   D      A +I
Sbjct: 14  SKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGTLEDEHETLI-RVHRDI----GAQWI 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I+  + +     E   +R +    +     +   +N+ FD  +  + + R   D    
Sbjct: 69  HHISAVELIHAPEFEG-IARELRDLLA---GRVFVAHNVAFDSKFLLSEYRRLGADIPVN 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           S         +L  M+   +    G              L D     GI++ +AH A +D
Sbjct: 125 SHT-------MLCTMKLSRSLIGVG-------------SLADCCREFGIDNEDAHSALSD 164

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
            +AT  L+  + +  PK   +        +  +      
Sbjct: 165 AHATALLLGRLMDADPKWSGWRRRLDAAEEAGEHWPELK 203


>gi|293380779|ref|ZP_06626825.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Lactobacillus crispatus 214-1]
 gi|290922665|gb|EFD99621.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Lactobacillus crispatus 214-1]
          Length = 318

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 24/206 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ + D ET G     DR  +  GV+V R  + ++          ++ +P      + GI
Sbjct: 32  NYTMLDIETTGLYPYRDRIIELGGVKV-RNGQIVDQYTNLVKFSKNNSVP-AFITKLNGI 89

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++ +++G+   +  R   +F    +  IIGYN               NF       + 
Sbjct: 90  TEEQIVKEGIPAEQAIREFREFI--GDDVIIGYNVNFDL----------NFLYDLSQKYG 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +DV+R    +                 +L D     GI  V AH    D   
Sbjct: 138 LPVLDNDYVDVLRLARTYY----------PRERHNRLLDCMQRAGIAQVEAHHGLQDSLD 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209
           T+ +     +            + KN
Sbjct: 188 TIKVYDDFAQHFTDDLLEKAQSKIKN 213


>gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217]
 gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217]
          Length = 688

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 52/188 (27%), Gaps = 29/188 (15%)

Query: 4   HFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV++D ET G      D   Q AG+R+      +   E F           P +  +  
Sbjct: 493 SFVVFDTETTGLSPRGGDEIVQIAGLRI-VNGRIL-RGECFDMLVNPGRAIPPASTRVHH 550

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ +       +  E  RR H F       ++  +N  FD  + R               
Sbjct: 551 ISDEMVQGAPGI-VEAGRRFHDF---CQGAVLVAHNAPFDLAFLRLKEKVIGR------- 599

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180
                        R         +      D +    L  L    G  I     H A  D
Sbjct: 600 -------------RFDNPVLCTVLMSAGLFDHSGQHTLDALCDRFGITIPPEARHTAMGD 646

Query: 181 VYATLALV 188
             AT  + 
Sbjct: 647 TVATAEVF 654


>gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
 gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
          Length = 315

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLI 191
            A+    
Sbjct: 162 AAVYQKC 168


>gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
 gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
          Length = 1477

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 123/387 (31%), Gaps = 47/387 (12%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D   + +   + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDEFGKLV-EHQDYLVKPEGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A   G+  AE   + ++  S      +   NI FD       F+R  
Sbjct: 61  -DAERIHGISTELAEEQGISLAEVVEKFNEALSK--ARFVVGQNIGFDVNIMGCEFHRLG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            D          S    + V+      + + ++ P    G   FKL +L        G+ 
Sbjct: 118 VD----------SPMSSMPVLDTCTEVTAELLKLPGGRGGK--FKLPNLTELHQYLFGVP 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ--NMTPLVHVSG 228
              AH+A ADV AT      + + +    E L    N  ++ +  + +      L HV+ 
Sbjct: 166 FAEAHNATADVEATTRCFLQLIKMEVFSVEQLQCDTNYFRVFREHNPEVIERIGLSHVNL 225

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
              +      L    A  P+         L+ + +  +      L      S  +    +
Sbjct: 226 KSASDEIRKRLQK--AEGPKISKQ----TLAENKQELERAVFAHLHNHTQFSVLQSTINI 279

Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP 348
           P  IK     K P +   D         +            ++     +  R +A   K 
Sbjct: 280 PALIKATAAAKMPAVAMTDRANMMGAFHFV---------AQVINHNKGVDARNQAAIEKG 330

Query: 349 YTSSSQDVDSQLYDGFFADVDRQIMDR 375
                  +   +   FF   + +   R
Sbjct: 331 EVPEEVPIKPIVGCEFFVCENHEDKKR 357


>gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
           8052]
 gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
           8052]
          Length = 1446

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/401 (11%), Positives = 115/401 (28%), Gaps = 46/401 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     ++  +   +++ +  + I+    F              V +T IT
Sbjct: 423 YCVLDLETTGFSPQTEKITEIGVMKI-KDGKVIDKFSTF---VNPQKSIPMRVVEVTKIT 478

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    ++    +   +        ++  +N  FD  + ++      Y+        
Sbjct: 479 DDMVKNAETID----KVFPKLLEFIEGSVLVAHNADFDIGFLKHNAKVLGYEF------- 527

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L + + ++                 S+KL  +A   GI+   AH A  DV  T
Sbjct: 528 DFTYIDTLGLAQDVF-------------PDYKSYKLGRIAKNLGIKVEVAHRALDDVDTT 574

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-----RSNTAL 239
           + +  +I EK  +         +     +         +     +  A      ++   L
Sbjct: 575 VKVFNIIIEKLKERGAQTLSDIDLYAADEEAKKVAYKKVKTHHAIILAKNYVGLKNLYKL 634

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
           ++       YK   I  ++         + S      L+ +   L        +  +   
Sbjct: 635 VSYSHLDYFYKKPRILKSMFKKYSEGLIIGSACSEGELYQA-ILLGKPEEQIEEIANFYD 693

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
              + P+        +      +   E N  ++     L     A  +  +     ++  
Sbjct: 694 YLEIQPLGNNDYLVRQEQVPSKEYLKEINKKIVELAERLGKPVVATGDVHFLDPEDEIYR 753

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
           ++ +                   +  + L L  ++  L E 
Sbjct: 754 RILEAGQGFK-----------DADNQAPLYLRTTEEMLDEF 783


>gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 406

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 62/202 (30%), Gaps = 27/202 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F + D ET G      R A+ A V VD         E     P  D  P      I
Sbjct: 1   MNAGFAVVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETL-VNPQRDLGPQ----HI 55

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI     L   V   + +  + +  +     ++  +N+ FD  +  +   R   +    
Sbjct: 56  HGIRAADILHAPV-FGDIAHDVMELLA---GRVLVAHNVHFDYRFVSHELGRAGLE---- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L  M+    + P   +            L+D   + G+   NAH A  D
Sbjct: 108 ---LPFEVHDCLCTMKLARRYLPGAGR-----------SLKDCCDSFGLNLANAHSAGDD 153

Query: 181 VYATLALVWLIREKKPKLFEYL 202
             A   ++           E+ 
Sbjct: 154 AEAAAHVLSNYLRMDSGNPEWF 175


>gi|218282259|ref|ZP_03488558.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989]
 gi|218216727|gb|EEC90265.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989]
          Length = 525

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 27/211 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V +D ET G D   DR  +   +        +E+          +     EA  I 
Sbjct: 49  MKRYVAFDVETTGLDSKKDRIIEVGAILF-ENGHTVETYSSL---VNPEVKISKEATTIN 104

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            IT     +    E    + + +F          I  +N  FD  +      R  YD+  
Sbjct: 105 HITNGMVKKAP-TEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQI 163

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D L + R                 G +++K   +A    I++   H A +
Sbjct: 164 L-------CLDTLSLSR-------------KIIPGLSNYKQTTVAKHFNIKNKQEHRAIS 203

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
           D      ++W +   K        +   K++
Sbjct: 204 DAEVCGEILWKLLSIKKDEEVKKLEILVKSK 234


>gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16]
 gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16]
          Length = 528

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 51/194 (26%), Gaps = 29/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G D   DR  +   V V          +             P    +TGIT
Sbjct: 30  IVFVDLETTGADAQRDRITEIGVVEVGPDGII--EWDTL---LDPGMSIPPFIQRMTGIT 84

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +            +  + +        +   +N RFD  + +N F R            
Sbjct: 85  EEMVRGQP-SFESLAESLAERLQ---GRLFVAHNARFDYGFLKNAFRRAGV--------- 131

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R D+L  +R   +  P   +            L  L    G+     H A AD    
Sbjct: 132 -TFRADVLCTVRLSRSLFPSVER----------HGLDALIARFGLTPKGRHRALADAELL 180

Query: 185 LALVWLIREKKPKL 198
                 I       
Sbjct: 181 WQFWQKIHATYSVD 194


>gi|304403858|ref|ZP_07385520.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304346836|gb|EFM12668.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 244

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 29/209 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +++D ET G      D    F  V V  + ++I     F+               +TGI
Sbjct: 60  IIVFDLETTGFYPYNGDEIISFGAVLV--KGDEIFEDVSFYSLVNPKRRIPMHITQLTGI 117

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +  + +H F       I+  +    D  +     +R          +
Sbjct: 118 TNEMVEGAP----DLMQVLHDFMEFVGRRILLAHGSGHDKQFLNAALWR------TSKVN 167

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +   D + V + +    PDG            + L +L  +  I   + H A  D   
Sbjct: 168 LTHRLLDTMMVAKWLEPKRPDG------------YGLDELLESANIPIADRHHALKDSIM 215

Query: 184 TLALV----WLIREKKPKLFEYLYDYRNK 208
           T  L       I+E+     + LY Y +K
Sbjct: 216 TAKLWMAYLKKIQERNIVTLDDLYAYLSK 244


>gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01]
 gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01]
          Length = 637

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 54/184 (29%), Gaps = 31/184 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  +D ET G D   D       V +    + +   EVF             +  + G+T
Sbjct: 453 YTAFDLETTGLDPEKDAIIALGAVHIL--GKTVLRHEVFEALVNPGRPIPKASTEVHGLT 510

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       +E E       F    +T ++ +N       +      R   D        
Sbjct: 511 WEMLKEKPKLE-EVLPGFRLFLE--DTVLLAHNGA-----FDMAFLRRVGIDQP------ 556

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 L+D +   Y   PD              +L+ LA   G+  +  H A  D   T
Sbjct: 557 -----PLVDTLLLSYLLFPDLQ----------DHRLETLAERFGVPVIGRHTALGDALMT 601

Query: 185 LALV 188
             + 
Sbjct: 602 AEVF 605


>gi|299538599|ref|ZP_07051882.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1]
 gi|298726186|gb|EFI66778.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1]
          Length = 923

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 77/259 (29%), Gaps = 31/259 (11%)

Query: 1   MTN--HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M     + I D ET G   A  DR  Q A V +     +IE T   F             
Sbjct: 1   MMESQKYAIVDLETTGHSPANGDRMIQIAIVIMKDW--EIERTYTKF--INPGKAIPTFI 56

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T IT +            +  I++  +    C+   +N  FD  + +  F R     
Sbjct: 57  QDLTHITNEDVKDA-FPFEAHADYIYELLAD---CVFVAHNADFDLSFLQAEFKRAGLP- 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     + D +++ +                  +  FKL DLA    IE  NAH A
Sbjct: 112 -----KWQGKKMDTVELAKI-------------LFPMSLGFKLGDLAADLNIELANAHRA 153

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRSN 236
             D  AT  L     ++   L +   +  +K   R K    Q     + +       R N
Sbjct: 154 DDDARATAELFKHCWKELLSLPQLTLEQMHKRSFRLKSNISQLFFEALQIKRQHTTGREN 213

Query: 237 TALIAPVAWHPRYKDSVIG 255
                  A           
Sbjct: 214 VHYYRNFAIGNGRNKHEHV 232


>gi|308068487|ref|YP_003870092.1| DNA polymerase III subunit epsilon [Paenibacillus polymyxa E681]
 gi|305857766|gb|ADM69554.1| DNA polymerase III, epsilon chain [Paenibacillus polymyxa E681]
          Length = 245

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 57/214 (26%), Gaps = 36/214 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V++D ET G      D    F  +RV      +   E F+       +       +TGIT
Sbjct: 61  VVFDLETTGFSAQHGDEILSFGAIRVVGDM--VMEKEQFYTLVNPRTVIPEHITELTGIT 118

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   +           +H F S     ++  +    D  +     ++            
Sbjct: 119 REMTDQAPP----LMNGLHDFMSFVGGRVLVAHASAHDKAFLNAALWK------TSKVQL 168

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +   D + + + +                   + L +L     I     H A  D   T
Sbjct: 169 THRVLDTMMLAKWLEPQQHQT------------YSLDELLAYQSIPIEGRHHALEDAKMT 216

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
             L           +        K  +  L D+ 
Sbjct: 217 AKL-----------WVAYVQEMLKRNVTNLADVY 239


>gi|307717326|gb|ADN88716.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717328|gb|ADN88717.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717342|gb|ADN88724.1| DNA polymerase III [Listeria marthii]
 gi|307717348|gb|ADN88727.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717364|gb|ADN88735.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717370|gb|ADN88738.1| DNA polymerase III [Listeria marthii]
 gi|307717372|gb|ADN88739.1| DNA polymerase III [Listeria marthii]
 gi|307717376|gb|ADN88741.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717382|gb|ADN88744.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717384|gb|ADN88745.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717398|gb|ADN88752.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717404|gb|ADN88755.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 76/252 (30%), Gaps = 27/252 (10%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     D   + AGV++ +  E I+  E F       +      + +TGIT    
Sbjct: 1   DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
                ++      + +F       I+  +N  FD  +    + +   +         N+ 
Sbjct: 57  KGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------KAENAV 106

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            D L++ R +Y                 + +L  L     I     H A  D  AT  L 
Sbjct: 107 VDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLA 153

Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
           W + +   ++ +  +     + + +    +   P         A             +  
Sbjct: 154 WKLIKDAKEMHDIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNIN 213

Query: 249 YKDSVIGCNLSG 260
           Y   V     S 
Sbjct: 214 YFYRVPRIPRSQ 225


>gi|257439307|ref|ZP_05615062.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257198182|gb|EEU96466.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 244

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61
           V +D ET G +    +  + A +RV++         +S +VF   P  + +P  + V +T
Sbjct: 15  VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-KIVELT 73

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++   +G+ EAE + R  +  S     ++  +N +FD  ++  +  R+        
Sbjct: 74  GITDEQLENEGITEAEAAARFTELIS-GGRVLLVAHNAQFDLLFTAEMLRRHGNGGP--E 130

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L V +   A+                     L      +  N+H A  DV
Sbjct: 131 ALKAADYLDSLTVYKDRRAYPHKLAN-------------AILTYKLEGKVQNSHRAIDDV 177

Query: 182 YATLALVWLIR--EKKPKLFEYLYDYRNKNQL 211
            A   +   +         +  ++ Y  K  +
Sbjct: 178 AALFEVCKAMDAERSDLLNYVNVFGYNPKYGV 209


>gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
 gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
          Length = 315

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 28/198 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERSIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++          +     
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEPQN---- 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 118 --KVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLIREKKPKLFEYL 202
            A+       + +     
Sbjct: 162 AAVYQKCASIEEETNRKS 179


>gi|29840147|ref|NP_829253.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
 gi|29834495|gb|AAP05131.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
          Length = 228

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 61/231 (26%), Gaps = 30/231 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               + YD ET G  +  DR  + A           + + V +     +     EA  I 
Sbjct: 1   MTALIFYDTETTGTQIDKDRIIEIAAY-----NNVTKQSFVTYV--NPEIPIPEEASKIH 53

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT            E  ++   F       ++ +NN  FD         R+  +     
Sbjct: 54  GITTSTVSSAPK-FPEAYKQFCDFCGN-EAILVAHNNDSFDFPLLEKECRRHSLEPL--- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     +D ++    + PD               LQ L    G     AH A  DV
Sbjct: 109 ------SLRTIDSLKWAQKYRPDL----------PKHNLQYLRQVYGFAENQAHRALDDV 152

Query: 182 YATLALVWLIREKKPKLFEYLYD--YRNKNQLRKLIDIQNMTPLVHVSGMF 230
                +   +                ++    +         PL  V   +
Sbjct: 153 ITLYNVFSALIGDLSAEQVLALMEESQHPKAFKMPFGKYRGKPLTEVPASY 203


>gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 525

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 51/188 (27%), Gaps = 25/188 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G   A     +   VRV       E                P    +TGITP
Sbjct: 11  VVVDLETTGLG-ARAEITEIGAVRVRE-GRLCEEFSSL---VRPVGPIPPAITALTGITP 65

Query: 66  QKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                     A    R   +  F   +  ++  +N  FD  + R           R    
Sbjct: 66  AMVRGAD-PIATVLDRFLTWAGFEAKDPVVLVAHNAPFDIGFLRRAAAACSLPWPR---- 120

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R                    + KL  +A   G   V  H A  D  A
Sbjct: 121 --VRVVDTLALAR-----------LALPRPIVRNHKLATVASYFGTATVPGHRALGDARA 167

Query: 184 TLALVWLI 191
           T  ++   
Sbjct: 168 TAEVLLGF 175


>gi|307717320|gb|ADN88713.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717330|gb|ADN88718.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717378|gb|ADN88742.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717380|gb|ADN88743.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717394|gb|ADN88750.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717396|gb|ADN88751.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 75/252 (29%), Gaps = 27/252 (10%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     D   + AGV++ +  E I+  E F       +      + +TGIT    
Sbjct: 1   DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
                ++      + +F       I+  +N  FD  +    + +   +         N+ 
Sbjct: 57  KGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------KAENAV 106

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            D L++ R +Y                 + +L  L     I     H A  D  AT  L 
Sbjct: 107 VDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLA 153

Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
           W + +   ++    +     + + +    +   P         A             +  
Sbjct: 154 WKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNIN 213

Query: 249 YKDSVIGCNLSG 260
           Y   V     S 
Sbjct: 214 YFYRVPRIPRSQ 225


>gi|116333503|ref|YP_795030.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
 gi|116098850|gb|ABJ63999.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
          Length = 948

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 88/282 (31%), Gaps = 40/282 (14%)

Query: 5   FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G  V   DR  Q   V V    + I   E                  +TGI
Sbjct: 7   YAVVDIETTGTSVTDGDRIIQIGCVFVQHN-QVINHFET---DVNPLKEIPAAISRLTGI 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++     +   + +  ++   +     +   +N+ FD  +      R  Y +      
Sbjct: 63  TNKRVRHAPL-FDDVAGTLYSLLTN---TVFVAHNVNFDLPFINAELERVGYPALP---- 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +D +                   ATSF+L+DL+    IEH N H A +D  A
Sbjct: 115 -----IAAVDTVSLSQILL----------PTATSFRLRDLSRLFNIEHDNPHSADSDASA 159

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L   +  +   L              ++ID+Q   PL   +    A + N      +
Sbjct: 160 TAELFIFLFRRLRALPMVTLQ--------RMIDLQADLPLQTTTLFRVAQQLNEQSPRKL 211

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK 285
              P Y     G  L             + +K   T   + K
Sbjct: 212 ---PDYLYIKNGLALR-QPAPLPATTLAEPSKYPKTKKQKQK 249


>gi|88802679|ref|ZP_01118206.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
           23-P]
 gi|88781537|gb|EAR12715.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
           23-P]
          Length = 1445

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 68/228 (29%), Gaps = 27/228 (11%)

Query: 5   FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     + P           Q A    D+    I     F  KP    +P 
Sbjct: 2   YLIFDTETTGLPKTWNAPITNTENWPRCVQIAWQLHDKMGNII-EHNDFLIKPDGYNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A   G+  AE     ++  S   T  I   N+ FD       FYR  
Sbjct: 61  -DAERIHGISTELAEEQGISLAEGLLLFNEVLSK--TTFIVGQNLNFDLNIMGCEFYRLG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +       +  +   +LD      A                +          G    +A
Sbjct: 118 VE-------DKMTPLPILDTCTEKTALMCQIPGGRGGKFKLPTLTELH-QHLFGAGFGDA 169

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
           H+A ADV AT      +              + K  +          P
Sbjct: 170 HNATADVEATTRCFLELIRI-----REFTKEQLKEDVAYFKKYSEANP 212


>gi|260587155|ref|ZP_05853068.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260542350|gb|EEX22919.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 244

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 21/191 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61
           V +D ET G +    +  + A +RV++         +S +VF   P  + +P  + V +T
Sbjct: 15  VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-KIVELT 73

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++   +G+ EAE + R  +        ++  +N +FD  ++  +  R+        
Sbjct: 74  GITDEQLENEGITEAEAAARFTELIG-GGRVLLVAHNAQFDLLFTAEMLRRHGNGGP--E 130

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L V +   A+                     L      +  N+H A  DV
Sbjct: 131 ALKAADYLDSLTVYKDRRAYPHKLAN-------------AILTYKLEDKVQNSHRAIDDV 177

Query: 182 YATLALVWLIR 192
            A   +   + 
Sbjct: 178 AALFEVCKAMD 188


>gi|256424475|ref|YP_003125128.1| DNA polymerase III subunit epsilon [Chitinophaga pinensis DSM 2588]
 gi|256039383|gb|ACU62927.1| DNA polymerase III, epsilon subunit [Chitinophaga pinensis DSM
           2588]
          Length = 456

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 86/331 (25%), Gaps = 37/331 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G   + +   + A    D     ++  E                  +TGIT
Sbjct: 2   YAIVDIETTGGHASANGITEIAIYIYD-GRNIVQQYETL---INPGVPIPRYIQSLTGIT 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E +  I          I   +N+ FD  + +    +  Y         
Sbjct: 58  DEMVANAPA-FDEVAGDIFALLHDK---IFVAHNVNFDYSFIQYHLAQAGY--------- 104

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   L  +R                 G  S+ L +L  +  I     H A  D  AT
Sbjct: 105 -QLRTKKLCTVRLGRKI----------IPGLPSYSLGNLCKSLEISVTQRHRAAGDAAAT 153

Query: 185 LALVWLIREKKP-KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           + L  L+ ++   K   +     +K Q             +  +            +  V
Sbjct: 154 VKLFGLLLQQDTGKAIAHALSTHSKEQFLPPNLPPEQVTALPGTPGVYYFHDQKGKVVYV 213

Query: 244 AW--------HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
                     +  +  +  G      +R    +        L     E   +  +     
Sbjct: 214 GKAKNIRKRVNSHFTGNSAGRKRQEFLRNIYSISHEVTGTELMAHILESVEIKRLWPVYN 273

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLE 326
           +  K        YC ++      +  ++  +
Sbjct: 274 YSQKYIEFKYGFYCFEDQEGYLRLVIEKRRK 304


>gi|229010951|ref|ZP_04168147.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM
           2048]
 gi|229132450|ref|ZP_04261304.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST196]
 gi|228651156|gb|EEL07137.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST196]
 gi|228750351|gb|EEM00181.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM
           2048]
          Length = 934

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F               
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPLFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDENLVKQAPL-FRDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEV 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLSEIEKLPLVTLQ 179


>gi|325291458|ref|YP_004277322.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
 gi|325059311|gb|ADY63002.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
          Length = 233

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 61/188 (32%), Gaps = 27/188 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G +  LDR  +  G+ ++  +     T   +  P +D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLESKLDRVIEIGGIELNNHF-PTGRTLHIYINP-EDRKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                     AE    I +FF          +N  FD  +    F R             
Sbjct: 62  DFLKDKPK-FAEVVDEIREFFE---GARWVAHNATFDMGFINAEFARLGIAPVSSE---- 113

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 114 -LVTDTLSLARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158

Query: 184 TLALVWLI 191
              +   +
Sbjct: 159 LAEVYIEM 166


>gi|269302439|gb|ACZ32539.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 249

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 26/187 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D E  G DV  DR  + A VR                    + +   E+  +  I+
Sbjct: 9   FTCLDCEMTGLDVKKDRIIEIAAVRFTFDSVI----SSIEFLINPERVVSAESQRVHHIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    + AE   +I  FF   +   I  +++ FD         R        ++ +
Sbjct: 65  NAMLRDQPKI-AEVFPQIKAFFKEGD--YIVGHSVGFDLQVLSQEMERIG-----ETFLS 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L + +                  + +  L+ LA+   + +   H A  DV   
Sbjct: 117 KYTIIDTLRLAK--------------EYGDSPNNSLESLAVHFNVPYDGNHRAMKDVEIN 162

Query: 185 LALVWLI 191
           + +   +
Sbjct: 163 INIFKHL 169


>gi|218904738|ref|YP_002452572.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH820]
 gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH820]
          Length = 315

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +                +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPKRPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A ++KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNYKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLI 191
            A+    
Sbjct: 162 AAVYQKC 168


>gi|163939458|ref|YP_001644342.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus weihenstephanensis KBAB4]
 gi|163861655|gb|ABY42714.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           weihenstephanensis KBAB4]
          Length = 934

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F               
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPLFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI      +  +   + +  I +            +N+ FD  +      +  Y   
Sbjct: 57  ELTGIDENLVKQAPL-FRDVAPMIVELLQ---GAAFVAHNVHFDWNFLNEELRQAGYTEV 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    + D +++ +                  A S+KL+DLA  + +EH   H A 
Sbjct: 113 H------CPKIDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L      +  KL      
Sbjct: 154 SDALATAELFLQFLSEIEKLPLVTLQ 179


>gi|15618565|ref|NP_224851.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           CWL029]
 gi|15836187|ref|NP_300711.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
 gi|16752385|ref|NP_444644.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
 gi|33242012|ref|NP_876953.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
           TW-183]
 gi|4376954|gb|AAD18794.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
 gi|8163364|gb|AAF73628.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
           pneumoniae AR39]
 gi|8979027|dbj|BAA98862.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
 gi|33236522|gb|AAP98610.1| DNA polymerase III [Chlamydophila pneumoniae TW-183]
          Length = 249

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 26/187 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D E  G DV  DR  + A VR                    + +   E+  +  I+
Sbjct: 9   FTCLDCEMTGLDVKKDRIIEIAAVRFTFDSVI----SSIEFLINPERVVSAESQRVHHIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    + AE   +I  FF   +   I  +++ FD         R        ++ +
Sbjct: 65  NAMLRDQPKI-AEVFPQIKAFFKEGD--YIVGHSVGFDLQVLAQEMERIG-----ETFLS 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D L + +                  + +  L+ LA+   + +   H A  DV   
Sbjct: 117 KYTIIDTLRLAK--------------EYGDSPNNSLESLAVHFNVPYDGNHRAMKDVEIN 162

Query: 185 LALVWLI 191
           + +   +
Sbjct: 163 INIFKHL 169


>gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 315

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERSIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++          +     
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEPQN---- 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 118 --KVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLI 191
            A+    
Sbjct: 162 AAVYQKC 168


>gi|199598401|ref|ZP_03211820.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
 gi|258508490|ref|YP_003171241.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
           rhamnosus GG]
 gi|199590720|gb|EDY98807.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
 gi|257148417|emb|CAR87390.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
           rhamnosus GG]
 gi|259649800|dbj|BAI41962.1| DNA helicase [Lactobacillus rhamnosus GG]
          Length = 933

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 28/194 (14%)

Query: 4   HFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F + D ET G      DR  QF    V R  + I   +        D         +TG
Sbjct: 6   TFAVVDLETTGTSVKDGDRMIQFGCALV-RHGKII---QTISQMINPDRSVPQTIQRLTG 61

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+P++ +       E +  +HQ  +     +   +N+ FD  +    F R      +   
Sbjct: 62  ISPERLVAAPY-FDEVAPALHQVLTK---TVFVAHNVNFDYPFLNAEFERIGLPKLQ--- 114

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  + +D +       P+           +SF+L DL     I+H N H A +D  
Sbjct: 115 ------LEAIDTVELAQVLLPEI----------SSFRLSDLTTHFAIQHDNPHQADSDAT 158

Query: 183 ATLALVWLIREKKP 196
           +T  L+  ++ +  
Sbjct: 159 STAKLLLQLKARFQ 172


>gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99]
 gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99]
          Length = 500

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 62/208 (29%), Gaps = 27/208 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D+ET G     DR  +   V +  + +  +               D  A    GI 
Sbjct: 98  FAVLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTL---INPHR--DVGATERHGIR 152

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  L     EA     I +        +   +N+ FD  +      R            
Sbjct: 153 ARDVLGAPAFEA----IIPRLLRDLRGRVFVAHNVNFDQRFLLAELRRAGVP-------- 200

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                     +   +      ++W  R   A S KL D   A G+   +AH A AD  AT
Sbjct: 201 ----------LDNPWLTGLCTMRWAGRLLPAASRKLPDCCDAAGVFLTDAHRALADARAT 250

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLR 212
            +L+  + +       +  +        
Sbjct: 251 ASLLKYLIDHCGSPPPWAKEIDGAEDFE 278


>gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 453

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 52/194 (26%), Gaps = 34/194 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                  D ET G     DR  +   V VD      E    +           P    +T
Sbjct: 1   MRPLAFVDLETTGATATHDRITEIGIVEVDADGSVRE----WQQLVNPGMRIPPFIEQLT 56

Query: 62  GITPQKALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           GI+ +        EA   E  +R+          +   +N RFD  + +N F R      
Sbjct: 57  GISDEMVADAPPFEAIAGEVMKRLE-------GRLFIAHNARFDYGFLKNEFKRLGV--- 106

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    R  +L  ++      P+               L  L   + +     H A 
Sbjct: 107 -------TFRAAVLCTVKLSRTLFPEH----------KRHNLDSLIERHELRAEARHRAL 149

Query: 179 ADVYATLALVWLIR 192
           AD          I 
Sbjct: 150 ADAQLIHQFWQKIH 163


>gi|78355675|ref|YP_387124.1| DNA polymerase III subunit epsilon [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218080|gb|ABB37429.1| DNA polymerase III, epsilon subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 239

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 57/201 (28%), Gaps = 16/201 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D E  G D   D       VR+             + +P         A  I  IT
Sbjct: 41  FAVTDMEMTGLDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQRSMARP--ATLIHRIT 98

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P +           +  +  F       +I  +++  D  +      R+           
Sbjct: 99  PAQLQHSPA----LAGLLPGFVDWCGQALITGHHVGLDMGFLTRACRRHL---------G 145

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRD-DGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           G      +D MR   A+  +  +          S+ L DL+   G+    AHDA  D   
Sbjct: 146 GAPATPCVDTMRLAQAWERERWERSFDPFQPTVSYTLADLSARYGLPQFRAHDALEDALQ 205

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L   +  K          
Sbjct: 206 TAYLFLYLVRKLKGGGITTLR 226


>gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC
           15444]
 gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 232

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 55/199 (27%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + +D ET G +    DR  +   V        I + + F              + ITGIT
Sbjct: 8   IAFDTETTGLNPNEGDRIIEIGAV---EMINHIPTGKTFRRLINPGMAVSEATIRITGIT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E      I  F       II  +N  FD  +      R   D        
Sbjct: 65  DDHLRDKPPFEHP--DIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIP----- 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D + + R  Y  +P                L  L     I   +   H A  D  
Sbjct: 118 EDRWVDTVQMARKRYPGAPA--------------SLDALCKRFDISLESRTFHGALLDSQ 163

Query: 183 ATLALVWLIREKKPKLFEY 201
              ++   +   + + F +
Sbjct: 164 LLASVYLELLGGRARAFSF 182


>gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 315

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERSIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLI 191
            A+    
Sbjct: 162 AAVYQKC 168


>gi|332877643|ref|ZP_08445386.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684392|gb|EGJ57246.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 258

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 79/256 (30%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++     +D ET G D+  DR  + + ++V     K    E               A  +
Sbjct: 5   LSKPICFFDLETTGIDITKDRIVEISILKVYPNGNK----ESKTWLVNPTIPIPAMASAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +K   +     E +++IH      +  + GYN+ RFD         R   D    
Sbjct: 61  HGITDEKVANEP-TFKELAKQIHNMIKDSD--LAGYNSDRFDIPLLAEEMLRAGVDFDL- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+  +   +   +                         G + + AH A AD
Sbjct: 117 ---GNRVTVDIQTIFHKMEQRTLS----------------AAYKFYCGKDLLEAHTAAAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239
             AT  ++    +K   L   +         +++ D             +F   +   + 
Sbjct: 158 TNATYEILKAQLDKYDNLENNIKKLSEFTYRKQIADFAGFIGYNSEGEEIFTFGKHKGSK 217

Query: 240 IAPVAWH-PRYKDSVI 254
           +  +  + P Y   ++
Sbjct: 218 VEDIFVNEPGYFGWLL 233


>gi|91789989|ref|YP_550941.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91699214|gb|ABE46043.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 729

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 59/213 (27%), Gaps = 27/213 (12%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + ++D ET G + +  D   Q   +R+      +   E             PE++ I G
Sbjct: 538 SYTVFDTETTGLEPSAGDEIIQIGAIRI-VNGRLL-RNETIDQLIDPRRRLKPESIAIHG 595

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         +E +     H+F       ++  +N  FD  + +               
Sbjct: 596 ITEDMVKGQPTIE-QALPAFHEFCED---TVLVAHNAAFDMRFLQLKEASTG-------- 643

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +          +          S +L+ +A   GI  +  H A  D  
Sbjct: 644 ------------IVFRQPVLDTLLLSALLHPNQESHRLEAIAGRLGINVIGRHTALGDAI 691

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215
            T  +   +     +   +      +   R   
Sbjct: 692 VTGEIFLKMIPLLAQQNIHTLRQAREAAARTYY 724


>gi|163782848|ref|ZP_02177844.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881969|gb|EDP75477.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 194

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 59/210 (28%), Gaps = 27/210 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV  D ET G DV          VRV       E+           +        +TGI
Sbjct: 9   TFVAIDVETTGFDVNHAEIIDIGAVRV-EGGIITETFSSL---VDPGFFIPDRIKELTGI 64

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +  E   R   F    ++ I+G++  +             F D Y   + 
Sbjct: 65  TNAMLVGSPKMI-EVLPRFMDFI--GDSIIVGHHISQDIK----------FIDKYTRLYG 111

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G  R   +  +       P                L+++A    +++   H A  D   
Sbjct: 112 EGKFRRPYICTLELSRKLLPSL----------PRHSLKEMADYFSVDYSRLHRALDDALI 161

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
           T  +   +       +     +  K   + 
Sbjct: 162 TAQVFLELLNLLWSNYGIGDYFSIKRLAKT 191


>gi|325068629|ref|ZP_08127302.1| hypothetical protein AoriK_12441 [Actinomyces oris K20]
          Length = 204

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 56/203 (27%), Gaps = 25/203 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V R  + +                  +   +TGI
Sbjct: 21  TFVVVDLETTGGAPGARSLTEIGAVKV-RGGQVLAEFSTL---VNPGVAIPAQITLLTGI 76

Query: 64  TPQKALRDG--VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           T              E         +  +  ++  +N RFD  + R        +     
Sbjct: 77  TNAMVAGAPGVRTCVEAFLDWADLLA--DDVVLVAHNARFDVGHLRGAAAALDLEWPE-- 132

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L + R  +                 + KL  LA   G +    H A  D 
Sbjct: 133 ----PRVLDTLALARKAWT-----------RSEVPNHKLGTLAAFVGSQIRPTHRALDDA 177

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
            AT+ ++    E    L     +
Sbjct: 178 RATVDVLHAALEVMAPLGVTHLE 200


>gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
           albus 8]
 gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
           albus 8]
          Length = 1498

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 58/206 (28%), Gaps = 29/206 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T+  + +D ET G +   D+  +   V++ R  E ++  ++                 +
Sbjct: 443 LTDEIICFDLETTGTNPRDDKIIEIGAVKL-RGLEIVDKFDML---VDPGCPLTEFISNL 498

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           T IT           ++    +  F         +  +N  FD  + ++   R       
Sbjct: 499 TNITDDMLKGQ----SDIKTALEAFVEFCGEKPCLVAHNAPFDTGFIKHACEREGI---- 550

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                  S  D + + + +                    KL  +A   G      H    
Sbjct: 551 ---KFEFSSIDTVPMSQLM-------------LPQLEKHKLNYVAEHFGYGDFQHHRGCD 594

Query: 180 DVYATLALVWLIREKKPKLFEYLYDY 205
           D      +   + +   + F  +   
Sbjct: 595 DAEVLGKIFIELAKMLMEQFPLVLIT 620


>gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 203

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 32/220 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   + ++D ET G D   D+  + A +R D    +    ++   K        PE V +
Sbjct: 1   MREIYTVFDLETTGLDPTKDQITEIAAIRTDL-IREYGRLDIRITK-NSGTKLTPEIVNL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+       GV E      +  F S   T ++ ++      + +R             
Sbjct: 59  TGISESMMRG-GVPEPVAIMLLSCFMS--GTIVVAHHAPFDLAFLARY------------ 103

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                          +                +   S  L  +A   GIE    H A  D
Sbjct: 104 ---------------QFEPDSFVCTRALSKLVESDESASLASVAERRGIELTGHHRAMND 148

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
           V AT+ +   ++ +   L    Y+    ++ R L  I  +
Sbjct: 149 VEATVKVFQQMKAEADALGIKYYNVLINDEERPLTYIPKL 188


>gi|217973179|ref|YP_002357930.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|217498314|gb|ACK46507.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
          Length = 208

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 59/230 (25%), Gaps = 39/230 (16%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G      DR  +   V +       +            +         T
Sbjct: 7   NTLVVLDFETTGLSPNQGDRAIEIGAVLI-ENGVITQRFSELM---NPGFRISRFIEDYT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ Q          E   R   F +  N   +  +N  FD  +    F +  +      
Sbjct: 63  GISNQMLRDA-APCNEVMARFADFIADHN---LVAHNAAFDQRFLDAEFAQIRH------ 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                         R +  F    +        A + +L  L     +      H A AD
Sbjct: 113 --------------RYLGQFGCSLLVARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALAD 158

Query: 181 VYATLALVWLIREKKPKLFEYL---------YDYRNKNQLRKLIDIQNMT 221
              T  L   +     + F               + K  + K +    + 
Sbjct: 159 AEMTGHLWLAMLADLQQEFGLCSPTFELLQKLAKKTKADVPKFLRQYAVK 208


>gi|229552292|ref|ZP_04441017.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           rhamnosus LMS2-1]
 gi|258539701|ref|YP_003174200.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
           rhamnosus Lc 705]
 gi|229314364|gb|EEN80337.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           rhamnosus LMS2-1]
 gi|257151377|emb|CAR90349.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
           rhamnosus Lc 705]
          Length = 933

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 28/194 (14%)

Query: 4   HFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F + D ET G      DR  QF    V R  + I   +        D         +TG
Sbjct: 6   TFAVVDLETTGTSVKDGDRMIQFGCALV-RHGKII---QTISQMINPDRSVPQTIQRLTG 61

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+P++ +       E +  +HQ  +     +   +N+ FD  +    F R      +   
Sbjct: 62  ISPERLVAAPY-FDEVAPALHQVLTK---TVFVAHNVNFDYPFLNAEFERIGLPKLQ--- 114

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  + +D +       P+           +SF+L DL     I+H N H A +D  
Sbjct: 115 ------LEAIDTVELAQVLLPEI----------SSFRLSDLTTHFAIQHDNPHQADSDAT 158

Query: 183 ATLALVWLIREKKP 196
           +T  L+  ++ +  
Sbjct: 159 STAKLLLQLKARFQ 172


>gi|188997343|ref|YP_001931594.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932410|gb|ACD67040.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 205

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 59/195 (30%), Gaps = 26/195 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G +       + A ++V       E       KP+  ++P+     +TGI
Sbjct: 10  TFTVVDLETTGLNPKTSEIIEIAAIKV-EGSVITEKFHTL-VKPSIGFIPE-HITKLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E    +    F       II  +N +FD  +      +           
Sbjct: 67  TNPLVIDKPKIE----QVFPHFLEFTKNSIIIAHNAKFDISFLNEASLQL---------T 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               +  ++  +       PD            S  L +LA    I +   H A AD   
Sbjct: 114 GKLIQNPVICTLVLANRLFPDL----------KSKSLTNLAYHFNIPYHRKHRALADAEV 163

Query: 184 TLALVWLIREKKPKL 198
           T  L     +     
Sbjct: 164 TYELFKKFVDYLQNY 178


>gi|77920206|ref|YP_358021.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380]
 gi|77546289|gb|ABA89851.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380]
          Length = 222

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 52/199 (26%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D+ET G      DR  +   VR+    +  +  +                   TGI+
Sbjct: 20  VVLDFETSGMSPVQGDRAIEIGAVRI-VGGQIADRFQSLM---NPGCRISSFIESFTGIS 75

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +     H F        +  +N  FD  +      R           +
Sbjct: 76  NAMVQAAP-PATQVMAAFHDFI---GDAPLVAHNASFDRRFLDAELQRI----------D 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183
              R +    +       PD          + + KL  L    G+      H A AD   
Sbjct: 122 RCRRQEFACSLLVARRVYPD----------SPNHKLATLVSYKGLPTDGCFHRALADAEM 171

Query: 184 TLALVWLIREKKPKLFEYL 202
           T  L   +       + + 
Sbjct: 172 TAHLWLRMAADLQDAYGFS 190


>gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237]
 gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237]
          Length = 1479

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 71/206 (34%), Gaps = 30/206 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     I   + +  +P    +P 
Sbjct: 2   YLIFDTETTGLPKRWDVPFTDTDNWPRCIQIAWQLHDDMGNLI-EHQDYLVQPDGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+   A + GV  A    + ++  +   T  +   N+ FD       F+R  
Sbjct: 61  -DAEQIHGISTALAEQKGVPLAVVLEKFNEAMAK--TKFVVGQNVGFDLNIMGAEFHRMG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            ++              L V+      +    Q P    G   FKL  L        G+ 
Sbjct: 118 VENPLQE----------LPVLDTCTEHTATLCQIPGGRGGK--FKLPTLTELHHYLFGVG 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKP 196
              AH+A ADV AT      +  K+ 
Sbjct: 166 FGEAHNATADVEATTRCFLELVRKQQ 191


>gi|312869960|ref|ZP_07730099.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
           PB013-T2-3]
 gi|311094545|gb|EFQ52850.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
           PB013-T2-3]
          Length = 949

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 28/185 (15%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G  V   DR  Q   V V +  + I   E    K           V +TGI
Sbjct: 19  YSVVDLETTGTSVNHGDRIIQIGCVLV-QDGQVINHFET---KVNPREKIPRAVVQLTGI 74

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +   +  + E + +  I+   +         +N+ FD  +      R  Y        
Sbjct: 75  QDRDVRKAPLFE-DVAGTIYSLLT---GTTFVAHNVNFDFPFLNAELERAGYPPL----- 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + + +                  A SF+L+DL  +  IEH + H A +D  A
Sbjct: 126 -PIKAIDTVTLSQI-------------LLPTAKSFRLRDLTSSLQIEHDHPHSAVSDAEA 171

Query: 184 TLALV 188
           T +L+
Sbjct: 172 TASLL 176


>gi|149188690|ref|ZP_01866982.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio
           shilonii AK1]
 gi|148837600|gb|EDL54545.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio
           shilonii AK1]
          Length = 207

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 59/206 (28%), Gaps = 34/206 (16%)

Query: 1   MT----NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           M        V+ D+ET G      DR  +   V++      ++  +         +    
Sbjct: 1   MMLSSAKSVVVLDFETTGLSPNQGDRAIEIGAVKL-ENGTVVDRFQSLM---NPGFRVSG 56

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
                TGI+            +       F    N   +  +N  FD  +          
Sbjct: 57  FIENYTGISNAMLANAP-SCKDVMGEFSTFIKNSN---LVAHNASFDKRFLDAE-----L 107

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNA 174
           +    S+                  F+   +     +  A S KL DL A  N       
Sbjct: 108 ELINESYTGE---------------FACSLLVSRRLNQEAHSHKLGDLVAYHNIANDGVF 152

Query: 175 HDAKADVYATLALVWLIREKKPKLFE 200
           H A AD   T +L  L+ +   + F+
Sbjct: 153 HRALADAEVTASLWLLLVDSLTERFK 178


>gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
 gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
          Length = 235

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 66/220 (30%), Gaps = 39/220 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61
           +I+D ET G D   DR  +   V      E I+       F         +   EAV I 
Sbjct: 4   IIFDTETTGLDKEKDRIIEIGCV------EMIDRYLTGKRFHVYLNPQGVVISDEAVAIH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T ++   +    ++ +  + +F S      +  +N  FD  +      R         
Sbjct: 58  GLTNERLKNE-KSFSDIADELLEFIS---GATMVAHNASFDIGFLNAELGRVNKPLISVD 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                   D L + R  +   P+               L  L    GI++ +   H A  
Sbjct: 114 N-----ILDTLAMARRKFPMGPN--------------SLDVLCKRFGIDNSHRVFHGALL 154

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           D      +   +   K      +  + N   + +      
Sbjct: 155 DAEILADVYIELIGGKQG----VLGFENSKSVEQDSQNDK 190


>gi|326406526|gb|ADZ63597.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp.
           lactis CV56]
          Length = 277

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 25/193 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  +V++D+ET G     +   Q   V+ D   ++                   E   +
Sbjct: 1   MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYV--STEITQL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI P   L    +E E       F       ++  +N  FD  +               
Sbjct: 59  TGIKPADLLNQPTIE-EILPEFLDFIK---GHLLVAHNAPFDISFLYQAIIDC------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                        +         D +    +    +S+ L++      +  + +HDA  D
Sbjct: 108 ------------AITDVEAFRVYDTLAESKKLLTMSSYALENFKDLLEMNDLRSHDALND 155

Query: 181 VYATLALVWLIRE 193
              T  L   +++
Sbjct: 156 CLITAKLYQYLQK 168


>gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
 gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
 gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 315

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +                +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPKRPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLI 191
            A+    
Sbjct: 162 AAVYQKC 168


>gi|33593048|ref|NP_880692.1| putative exonuclease [Bordetella pertussis Tohama I]
 gi|33563423|emb|CAE42302.1| putative exonuclease [Bordetella pertussis Tohama I]
 gi|332382461|gb|AEE67308.1| putative exonuclease [Bordetella pertussis CS]
          Length = 224

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 56/180 (31%), Gaps = 27/180 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G  VA     +FA VRV    +              D    P    +TGIT
Sbjct: 57  FVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQV---VRTDGRVLPFISRLTGIT 113

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  RDGV   +       F        + ++N  FD  + +    R        +   
Sbjct: 114 QAEVERDGVPVRQAFGDFLDFIE---GGPLFFHNASFDRRFLQAAADRTGLPFEAQT--- 167

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L + R  +                 S KL  LA   G      H A ADV  T
Sbjct: 168 ----HCTLMLARQAW-------------PELPSHKLNVLARHLGAS-EPTHRALADVRTT 209


>gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 1457

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/476 (12%), Positives = 136/476 (28%), Gaps = 44/476 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     +   +F  V V +  + +E  E                  +TGIT
Sbjct: 404 YVVFDLETTGLSPKFNELIEFGAV-VWQNGQILEKHEFL---IKPKEKIPSYISDLTGIT 459

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q    + +   E + +I Q F      I+  +N RFD       F              
Sbjct: 460 NQMIENEAISVEEAAIKIKQIFQNS---ILVAHNARFDYGCLVEFFKELELYELE----- 511

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R +                  + K      +   +   +H    D    
Sbjct: 512 -QPVIDTLEVSRFLAP-----------TQKRHNLKELAKNASIHYDETESHRGGYDAEVL 559

Query: 185 LALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             +      K  +      +  N+  + +         +  + V             +  
Sbjct: 560 AKVWDQFLIKLIEKNIKDLNSLNQVGSNILDFKRRGLFSKEIRVIVKNQQGLKELFKLVS 619

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL-----FTSHDELKGLVPVPIKEVHL 297
           ++    +    +               +  L  +L     +  H++L+ L+         
Sbjct: 620 LSNTDNFLSKPLLFYDKILPSNNLLWGTSGLDSQLMEILFYNHHNDLETLIKKFDFIEIP 679

Query: 298 NKCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT----NLRDRFKAIYNKPYT 350
                   +      K++  +   +  +   ++  L+   +      ++         Y 
Sbjct: 680 TPSSFIHLIKRNKIKKEDIIKGLKLVIELARKHKKLIVASSEPRYINKEDKIFHLVYIYA 739

Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
                    L+ G     +  I         ++L        D+ L +       RN P+
Sbjct: 740 KGVGGKPHNLFGGDTDKKEDHIFPTKYFMTTQELKAEFAFLEDQDLID---EIVVRN-PN 795

Query: 411 TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
            +   +  + ++  K  L   + ++  +K++ L  +   ++  E L + +   ++ 
Sbjct: 796 KI--ADLVEQVQVIKDKLYPPKFDDSASKIKHLVYQKAHEKYGENLPDQIALRIEK 849


>gi|153000864|ref|YP_001366545.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185]
 gi|160875572|ref|YP_001554888.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195]
 gi|151365482|gb|ABS08482.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185]
 gi|160861094|gb|ABX49628.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195]
 gi|315267759|gb|ADT94612.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678]
          Length = 208

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 53/202 (26%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G      DR  +   V +       +            +         T
Sbjct: 7   NTLVVLDFETTGLSPNQGDRAIEIGAVLI-EDGVITQRFSELM---NPGFRISRFIEDYT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ Q          E   R   F +  N   +  +N  FD  +    F +  +      
Sbjct: 63  GISNQMLRDA-APCNEVMARFADFIADHN---LVAHNAAFDQRFLDAEFAQIRH------ 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                         R +  F    +        A + +L  L     +      H A AD
Sbjct: 113 --------------RYLGQFGCSLLVARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALAD 158

Query: 181 VYATLALVWLIREKKPKLFEYL 202
              T  L   +     + F   
Sbjct: 159 AEMTGHLWLAMLADLQQEFGLC 180


>gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
 gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
          Length = 1436

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/474 (11%), Positives = 123/474 (25%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E IE  + F       +    + + +T IT
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIERFDKF---INPHHPLSEQTINLTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    ++   F        +  +N++FD  +      R            
Sbjct: 475 DEMVSAAD-DEDVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLSEI------ 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                    L  LA    +   + H A  D  AT
Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   K +                  +   P                      
Sbjct: 572 GYLMYKLLDAFKKKYNEDNLNNLNGYAAHGEVYKRARPSHMTVLAKDQKGLKNLYKLVSI 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +     S   R+ + L       +       ++       ++        + 
Sbjct: 632 ASTKNFYRIPRTPKSDLARLHEGLFYGSGCWQGDVFIAMIQKGYDEAREKAKFYDFLEVQ 691

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P     +   +    D  +  + +  + +     ++        +     D   +   + 
Sbjct: 692 PPANYSQLIEDGLIKDEAQLEDIIRNIYKLGKELNKPVVATGDAHYVEPHDAIYRTILIS 751

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    +    +   + +++      F   D     +       N        E  +
Sbjct: 752 AQRSNPNRNKPQPDLHFYSTQEMLD-AFSFLGED-----IAKEIVIDNTNKI--ADEISE 803

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    I     +++ L    + E  G    + + + +   L  +I 
Sbjct: 804 IQ-PIKDGLYPPHIAHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 856


>gi|90577496|ref|ZP_01233307.1| putative DNA polymerase III [Vibrio angustum S14]
 gi|90440582|gb|EAS65762.1| putative DNA polymerase III [Vibrio angustum S14]
          Length = 207

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 57/227 (25%), Gaps = 30/227 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  V+ D+ET G      DR  +   V++    E ++  +         +         T
Sbjct: 8   DSVVVLDFETTGLSPNQGDRAIEIGAVKL-VNGEVVDQFQQLM---NPGFRVSSFIEGYT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+            E       F    N   +  +N  FD  +                
Sbjct: 64  GISNNMLRTAP-PCNEVMDAFADFIGDAN---LVAHNASFDQRFLDAELADIGRY----- 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180
                              F+   +        A + KL  L     IEH    H A AD
Sbjct: 115 ---------------YTGTFTCSMLIARRLYQHAPNHKLGTLVDFKHIEHNGVFHRALAD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
              T  L  ++ E   + +                    +  L H  
Sbjct: 160 SEMTARLWLVMIEDIKRQYNLHTVSFELMMKLAKTPKAKIDTLFHRY 206


>gi|94263435|ref|ZP_01287248.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
 gi|94270278|ref|ZP_01291698.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
 gi|93450870|gb|EAT01889.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
 gi|93456165|gb|EAT06304.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
          Length = 238

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 14/205 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D E  G D   D       VR++     +   + F+ +         ++  I  +T
Sbjct: 40  FVVFDTELTGLDRRRDEIVSIGAVRINNLRIMVG--DTFYVQVKPSQALPKDSTLIHRLT 97

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P +           +  +  F       ++  + +  D  +      R       +    
Sbjct: 98  PHQLSDAPP----LATVLPGFIDYCGQSLLVGHFVGLDVAFVNRACLR------YYGARL 147

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +              R D   S+ L  L    G+     H+A  D   T
Sbjct: 148 SNPCLDTMHLAQTHTEMQWQQYHDRFRMD--ISYNLAALGAKYGLPAFTHHNAYEDALQT 205

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
             L   + +K             K 
Sbjct: 206 AYLFIYLVKKMRSQGVVTLHDLYKA 230


>gi|260063099|ref|YP_003196179.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
 gi|88784668|gb|EAR15838.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
          Length = 375

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G     +   + A  R D   E +++          +    P    +TGI
Sbjct: 2   TYAVLDIETTGGKFDEEGITEIAIHRFDGH-EVVDTFISL---INPERPIQPYVQKLTGI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+          + ++RI +        ++  +N +FD    R  F R  Y+       
Sbjct: 58  DPKMVQTAPRFH-QVAKRIVEITRDS---VLVAHNAQFDYRILRTEFRRLGYNF------ 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                          A S  L  L  + GI   N H A  D  A
Sbjct: 108 --------------ERKTLCTVDLSQRLIPDAESHSLGKLVRSLGIPVSNRHRANGDALA 153

Query: 184 TLALVWLIREKKP 196
           TL L+  + ++  
Sbjct: 154 TLKLLQHLLDRDT 166


>gi|256828365|ref|YP_003157093.1| DNA polymerase III subunit epsilon [Desulfomicrobium baculatum DSM
           4028]
 gi|256577541|gb|ACU88677.1| DNA polymerase III, epsilon subunit [Desulfomicrobium baculatum DSM
           4028]
          Length = 244

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 55/201 (27%), Gaps = 16/201 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D E  G     +       VRV            F             +  I  IT
Sbjct: 46  YTVLDTELTGLSARREEIVSIGAVRVRGLAIVPGE--SFSVLVRPSIPLPKTSTLIHRIT 103

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+   +     AE    + +F     T I+G++    D  +      +N           
Sbjct: 104 PEAIAQAP-PLAEVLPELIEFCK--GTLIVGHHVG-LDMSFLNRACRKNHGQPLANP--- 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADVYA 183
                  LD MR    +              + S+ L DLA    +    AH+A  D   
Sbjct: 157 ------CLDTMRMAMLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQ 210

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L   + +K          
Sbjct: 211 TAYLFIYLAKKIAGNRPLTLR 231


>gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
 gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4]
          Length = 236

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 65/196 (33%), Gaps = 27/196 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G +  LDR  +  G+ +   +     +   +  PA D    P+A+ + GITP
Sbjct: 4   IVFDTETTGLESKLDRVIEIGGIELFNHF-PTGRSFHVYINPA-DRAIHPDALAVHGITP 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +      V  A+    +  FF   +      +N  FD  +    F R             
Sbjct: 62  EFLKDKPV-FADIVEDLVAFF---DGAKWVAHNATFDMGFINAEFERLGRPLV-----GP 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 113 EHVIDTLSLARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158

Query: 184 TLALVWLIREKKPKLF 199
              +   +   +   F
Sbjct: 159 LAEVYIEMLGGRQATF 174


>gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 468

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 54/190 (28%), Gaps = 28/190 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   Q   VRV                          +  +  +
Sbjct: 275 SYTVFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVLDLLV--DPGIPIPASSSRVHKV 332

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +  E  RR H+F       +I  +N  FD  + R    R   +       
Sbjct: 333 TDAMVAGKPDI-GEAGRRFHRF---AKGSVIVAHNAPFDMAFLRRHRDRMGVEW------ 382

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                  +LD +                   + +  L  L    G+E   A  H A  D 
Sbjct: 383 ----DHPILDTVLLSAVLF----------GASETHTLDALCQRLGVEIPQALRHTALGDA 428

Query: 182 YATLALVWLI 191
            AT  ++ ++
Sbjct: 429 NATAQVLVMM 438


>gi|224283886|ref|ZP_03647208.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum NCIMB
           41171]
 gi|311064734|ref|YP_003971459.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010]
 gi|313141038|ref|ZP_07803231.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB
           41171]
 gi|310867053|gb|ADP36422.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium bifidum
           PRL2010]
 gi|313133548|gb|EFR51165.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB
           41171]
          Length = 180

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 28/198 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + +V+ D ET G     D   +F  V+V    + +++ +            +P    +
Sbjct: 7   LPDDYVVLDLETTGVSWYRDTIIEFGAVKV-VDRKPVDTYQQL---VNPMRNLNPFITQL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           TGITP        ++      +  F        +IG+N ++FD  +      R       
Sbjct: 63  TGITPDMLEPAPTLD----TVLPDFLRWCGDDAMIGHNIMQFDIKFIDLAAQRIL----- 113

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                 N   D L + R++Y                   +L DL     I  V  H A +
Sbjct: 114 -HHAVPNRIIDTLQMSRSMYPQYN-------------RHRLVDLIQRFDIADVEEHRALS 159

Query: 180 DVYATLALVWLIREKKPK 197
           D   T      +R+++ +
Sbjct: 160 DAEQTQMCFEYMRDEQRR 177


>gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu]
          Length = 375

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 49/189 (25%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGSSAEHRITEIGVVEIGPLG-----VSTWTSLVNPGQPIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A  +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRDAP-SFASLAPAL---FERLDGKLFVAHNASFDRGFLRAEFERIGLAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   +G+     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHGLVPSARHRALADADLL 165

Query: 185 LALVWLIRE 193
                 + E
Sbjct: 166 WQFWRQLHE 174


>gi|328948895|ref|YP_004366232.1| DNA polymerase III subunit epsilon [Treponema succinifaciens DSM
           2489]
 gi|328449219|gb|AEB14935.1| DNA polymerase III, epsilon subunit [Treponema succinifaciens DSM
           2489]
          Length = 216

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 62/208 (29%), Gaps = 18/208 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV +D ET G     +   +   V+ +     I        KP            +T 
Sbjct: 20  KTFVAFDTETTGLKAEKEFIIEIGAVKFNCDG-IIGEPFDILIKPP--IELPQFIKDLTH 76

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          E   +   F     T ++  +N +FD  +  +   R  +       
Sbjct: 77  ITDKMISCCP-CAKEAVPQFLNFVGGKET-VLVAHNAQFDLGFINSELKRFSHPEL---- 130

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L+  R  Y           ++     +KLQ LA   GIE   AH A  D  
Sbjct: 131 --PNVCIDTLNASRWAYPDF-------IKEQEKGQYKLQSLAKRFGIEAKAAHRANDDAR 181

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210
             + +   I        +     + K  
Sbjct: 182 LCMEIFKRIISDTMDKQKNFSIDKIKRN 209


>gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
 gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
 gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 315

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +                +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPKRPIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLI 191
            A+    
Sbjct: 162 AAVYQKC 168


>gi|34541463|ref|NP_905942.1| exonuclease [Porphyromonas gingivalis W83]
 gi|34397780|gb|AAQ66841.1| exonuclease [Porphyromonas gingivalis W83]
          Length = 259

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 61/205 (29%), Gaps = 27/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  + +D ET G D+  DR  + + ++V     +    E    +   +    PE+  I
Sbjct: 5   LKNPLIFFDLETTGVDLVRDRIVEISILKVMPDGSE----ECKTRRINPERPIPPESTAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +            ++ + Q+       + G+N+ RFD       F R   D    
Sbjct: 61  HGIRDEDVKDCP-PFRSVAKSLAQWIE--GCDLAGFNSTRFDVPMLVEEFLRAGVDIDLR 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+  +                                      NAH A+AD
Sbjct: 118 HRKL----IDVQTIFH----------------KMEPRTLEAATRFYCNRTLENAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205
             AT  +     ++     E    +
Sbjct: 158 TRATYDVFKAQLDRYEGTLENDMAF 182


>gi|119945580|ref|YP_943260.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
 gi|119864184|gb|ABM03661.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
          Length = 204

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 61/201 (30%), Gaps = 30/201 (14%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + VI+D+ET G    + DRP +   VR+ +    +E  +                   T
Sbjct: 5   KNIVIFDFETTGLSPKMGDRPIEIGAVRI-KNGLLVERFQALM---HPGIRISSFIENFT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +         AE   R   F    N   +  +N  FD  +     +R         
Sbjct: 61  GISNKMLAEA-KPCAEVMGRFCDFIGSDN---LVAHNASFDKRFLDAELHRI-------- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
              G S      ++ A                 A + KL  L     I+     H A  D
Sbjct: 109 -SRGYSGQISCSMLLARRVLR-----------DAPNHKLGTLVDYLNIQTEGVYHRALFD 156

Query: 181 VYATLALVWLIREKKPKLFEY 201
              T  +   +  K  + ++ 
Sbjct: 157 SEMTANVWLAMINKIQQHYKM 177


>gi|281491483|ref|YP_003353463.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375201|gb|ADA64714.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
           KF147]
          Length = 277

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 25/193 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  +V++D+ET G     +   Q   V+ D   ++                   E   +
Sbjct: 1   MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYV--STEITQL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI P   L    +E E       F       ++  +N  FD  +               
Sbjct: 59  TGIKPADLLNQPTIE-EILPEFLDFIK---GHLLVAHNAPFDISFLYQAIIDC------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                        +         D +    +    +S+ L++      +  + +HDA  D
Sbjct: 108 ------------AITDVEAFRVYDTLAESKKLLTMSSYALENFKDLLEMNDLRSHDALND 155

Query: 181 VYATLALVWLIRE 193
              T  L   +++
Sbjct: 156 CLITAKLYQYLQK 168


>gi|15672964|ref|NP_267138.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723925|gb|AAK05080.1|AE006332_9 DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 277

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 25/193 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  +V++D+ET G     +   Q   V+ D   ++                   E   +
Sbjct: 1   MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYV--STEITQL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI P   L    +E E       F       ++  +N  FD  +               
Sbjct: 59  TGIKPADLLNQPTIE-EILPEFLDFIK---GHLLVAHNAPFDISFLYQAIIDC------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                        +         D +    +    +S+ L++      +  + +HDA  D
Sbjct: 108 ------------AITDVEAFRVYDTLAESKKLLTMSSYALENFKDLLEMNDLRSHDALND 155

Query: 181 VYATLALVWLIRE 193
              T  L   +++
Sbjct: 156 CLITAKLYQYLQK 168


>gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987]
 gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC
           10987]
          Length = 315

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERSIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLI 191
            A+    
Sbjct: 162 AAVYQKC 168


>gi|282878677|ref|ZP_06287446.1| exonuclease [Prevotella buccalis ATCC 35310]
 gi|281299222|gb|EFA91622.1| exonuclease [Prevotella buccalis ATCC 35310]
          Length = 284

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 82/267 (30%), Gaps = 23/267 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    +++D ET G D+  DR  Q + ++V    ++ E   +       +     E   +
Sbjct: 5   LKKPIIVFDLETTGLDLVKDRIIQISYIKVFPDGKE-ERENIL---VNPEKNIPLEVSAL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR-------- 112
           TGIT +          + ++++ + F        GYN+  FD       F R        
Sbjct: 61  TGITNEDVADAPK-FQDIAQKLAEEFK--GCDFAGYNSNHFDIPILAEEFLRAGIDFDFS 117

Query: 113 --NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANG 168
             N  D+                          D     +  D   +++  +  L   N 
Sbjct: 118 KSNLVDAQAIFHKMERRNLAAAYKFYCGRKMEDDFEAHRADQDAEVTYRVLMGQLDKYNP 177

Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRN-KNQLRKLIDIQNMTPLVHVS 227
                A  A  +      L    +      F     +R+ K    K++  ++ +P+    
Sbjct: 178 ETAEEADRALPN--DMKYLAEFSKMNDNVDFAGRIVWRDMKGADGKVLTTEDGSPMRQEV 235

Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVI 254
             FG  +        +   P Y   ++
Sbjct: 236 FNFGKYKGCAVTEV-LLKDPGYYSWML 261


>gi|148245142|ref|YP_001219835.1| DNA polymerase III subunit epsilon [Clostridium kluyveri DSM 555]
 gi|146337022|gb|ABQ23633.1| DNA polymerase III, epsilon subunit related exonuclease
           [Clostridium kluyveri DSM 555]
          Length = 441

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 91/346 (26%), Gaps = 33/346 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++FV+ D ET G +   D   + A  +     E I++          +    P    I  
Sbjct: 129 DNFVVVDLETTGLEPTRDYIIEIAAAKY-ENNEIIDTYTTL---VNPEVFIPPNITNINH 184

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             E    +  F +      +  +N  FD  +                 
Sbjct: 185 IDNDMVKDCP----EIKEVLPGFMNFIGQLPLVAHNAPFDIKFLNANLALLGLY------ 234

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L + R                    + KL  +     I+  ++H A  D Y
Sbjct: 235 -LNNPIIDTLPISR-------------KLFSEIENHKLGTIKEYLNIDVQDSHRALPDCY 280

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
               +   +     +  +        +    L   +  + +  +        +       
Sbjct: 281 VCGQI--YLEYSTKEKNKKALANIKLHSDIGLNKEECYSIVKEILKKHNKDLTYVRYG-F 337

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
            + +   +       L    + +  L    LA+      D        P  +   NK  I
Sbjct: 338 TSNYFDIRAFYNFLRLKLKGKKYYALLDNSLAEINSMIPDLTLKYEVAP--KSESNKIRI 395

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP 348
           L+                  +C++++   R   ++ ++  A Y   
Sbjct: 396 LINSPEDLYILEPIIIQAFDKCIDSMEYYRNNVSVAEKNIAEYLNT 441


>gi|56477410|ref|YP_158999.1| nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) [Aromatoleum aromaticum EbN1]
 gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) [Aromatoleum aromaticum EbN1]
          Length = 469

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 28/191 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + +  V+ D ET G +   DR  + A +R++R  E +   E        +         +
Sbjct: 3   LPDSLVLIDVETTGANPVSDRVTEIAVLRIER-GEIVGRWESL---VNPERPIPALIQRL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         AE +  +       +  +   +N RFD  + RN F R        
Sbjct: 59  VGITDEMVAGAP-TFAELADSVRGHL---DGAVFVAHNARFDYGFIRNEFSRLGQ----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     +L  ++   A  P+  +            L  L   +G      H A  D
Sbjct: 110 -----QFEASVLCTVKLSRALYPEHHR----------HGLDALIERHGFTCGARHRAMGD 154

Query: 181 VYATLALVWLI 191
                    L+
Sbjct: 155 TDVLWQFARLV 165


>gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1271

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 70/491 (14%), Positives = 134/491 (27%), Gaps = 65/491 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   +F G  V +    I+S ++F                +TGI
Sbjct: 220 TYCVFDLETTGLSSRFDHIIEFGGQIV-KDRACIKSLQMF---IKPPVALSAFTTELTGI 275

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         A+    I  F       I+  +N  FD  +  +   R           
Sbjct: 276 TEEHMKNA-KSFADSIDEILDFI---GDSILVAHNATFDYNFLNDELARIGRKPI----- 326

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D LD+ R++ A                 ++L  +A + GI +    AH A  D 
Sbjct: 327 -MNPVIDTLDLARSMQA-------------DRKGYRLGQIARSYGIRYDEDVAHRADYDA 372

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL----VHVSGMFGASRSNT 237
                           +   L   +N  +L+ +   ++   +    V V     A     
Sbjct: 373 EVLAQTY-------MNMLNDLKHIKNLQELQDMQTAESFRKVRVKHVTVLAKNMAGLKEL 425

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQ---LAKRLFTSHDELKGLVPVPIKE 294
             +  +  H +Y         +           ++   +   L      L G V    + 
Sbjct: 426 FELVTL-SHTKYLAYSSKSTNNIVAEPRILRSEIEKRRINGNLLIGSSCLNGEVFDMAQT 484

Query: 295 ---------VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY 345
                    +       + P++  +            R  E L  +    +  D+     
Sbjct: 485 RNEQTLEEVMQFYDYIEIQPLENYRHLVERDSISSMDRLKEILKSIVSAADKLDKLLVAT 544

Query: 346 NK-PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLST---LNLPFSDRRLPELFF 401
               Y    + +   +Y    A    +    I      +       +   +   L E  +
Sbjct: 545 GDCHYVQPGEKMIRDIYISSQAIGGVRHPLYIYNQEKRRKFKAPDQHFRTTKEMLKEFAW 604

Query: 402 RYRARNFPHTLSEKEKQDWLEHR------KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEG 455
                   + +  K  +   +        K  L    IE    KL  +  E    +    
Sbjct: 605 --LGEQRAYDMVIKNTKLIADMIQEVKPVKDRLYPPDIEGSDQKLTDICYENAHKKYGPV 662

Query: 456 LINALYEYLQW 466
           L   + + L+ 
Sbjct: 663 LPEIVEKRLEK 673


>gi|126174568|ref|YP_001050717.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155]
 gi|125997773|gb|ABN61848.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155]
          Length = 208

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 53/202 (26%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G      DR  +   V +       +            +         T
Sbjct: 7   NTLVVLDFETTGLSPNQGDRAIEIGAVLI-EDGVITQRFSELM---NPGFRISRFIEDYT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ Q          E   R   F +  N   +  +N  FD  +    F +  +      
Sbjct: 63  GISNQMLRDA-APCNEVMARFADFIADHN---LVAHNAAFDQRFLDAEFAQIRH------ 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                         R +  F    +        A + +L  L     +      H A AD
Sbjct: 113 --------------RYLGQFGCSLLVARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALAD 158

Query: 181 VYATLALVWLIREKKPKLFEYL 202
              T  L   +     + F   
Sbjct: 159 AEMTGHLWLAMLADLQQEFGLC 180


>gi|89072880|ref|ZP_01159437.1| putative DNA polymerase III [Photobacterium sp. SKA34]
 gi|89051402|gb|EAR56857.1| putative DNA polymerase III [Photobacterium sp. SKA34]
          Length = 207

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 57/227 (25%), Gaps = 30/227 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  V+ D+ET G      DR  +   V++    E ++  +         +         T
Sbjct: 8   DSVVVLDFETTGLSPNQGDRAIEIGAVKL-VNGEIVDQFQQLM---NPGFRVSSFIEGYT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+            E       F    N   +  +N  FD  +                
Sbjct: 64  GISNNMLRTAPPCH-EVMDAFADFIGDAN---LVAHNASFDQRFLDAELADIGRY----- 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180
                              F+   +        A + KL  L     I+H    H A AD
Sbjct: 115 ---------------YTGTFTCSMLIARRLYQHAPNHKLGTLVDFKHIKHNGVFHRALAD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
              T  L  ++ E   + +                    +  L H  
Sbjct: 160 SEMTARLWLVMLEDIKRQYNLHTISFELMIKLAKTPKAKIDTLFHRY 206


>gi|148544145|ref|YP_001271515.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
           DSM 20016]
 gi|184153518|ref|YP_001841859.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112]
 gi|227364574|ref|ZP_03848635.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM2-3]
 gi|325682311|ref|ZP_08161828.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A]
 gi|148531179|gb|ABQ83178.1| DnaQ family exonuclease/DinG family helicase, putative
           [Lactobacillus reuteri DSM 20016]
 gi|183224862|dbj|BAG25379.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112]
 gi|227070411|gb|EEI08773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM2-3]
 gi|324978150|gb|EGC15100.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A]
          Length = 954

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 71/201 (35%), Gaps = 28/201 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G +V   DR  Q   V V +  E I   E    K           V +TGI
Sbjct: 19  YSVVDLETTGTNVNHGDRIIQIGCVLV-QDGEIINHFET---KINPREKIPRSIVQLTGI 74

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +   +  + E + +  I+   +         +N+ FD  +      R  Y S      
Sbjct: 75  EDKDVRKAPLFE-DIAGTIYSLLAE---TTFVAHNVNFDFPFLNAELERAGYPSLS---- 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +D +                   A SF+L+DL  +  IEH + H A +D  A
Sbjct: 127 -----IPAIDTVTLSQILL----------PTAKSFRLRDLTSSLHIEHDHPHSAVSDAEA 171

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+  + ++  +L     +
Sbjct: 172 TADLLNDLLKRVQELPTLTLE 192


>gi|307717410|gb|ADN88758.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717414|gb|ADN88760.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717416|gb|ADN88761.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
          Length = 231

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 75/252 (29%), Gaps = 27/252 (10%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     D   + AGV++ +  E I+  E F       +      + +TGIT    
Sbjct: 1   DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
                ++      + +F       I+  +N  FD  +    + +             N+ 
Sbjct: 57  KGSDPIDV----VLQRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------KAENAV 106

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            D L++ R +Y                 + +L  L     I     H A  D  AT  L 
Sbjct: 107 VDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLA 153

Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
           W + +   ++ +  Y     + + +    +   P         A             +  
Sbjct: 154 WKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNIN 213

Query: 249 YKDSVIGCNLSG 260
           Y   V     S 
Sbjct: 214 YFYRVPRIPRSQ 225


>gi|194468010|ref|ZP_03073996.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
           100-23]
 gi|194452863|gb|EDX41761.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
           100-23]
          Length = 954

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 65/185 (35%), Gaps = 28/185 (15%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G +V   DR  Q   V V +  E I   E    K           V +TGI
Sbjct: 19  YSVVDLETTGTNVNHGDRIIQIGCVLV-QDGEIINHFET---KINPREKIPRSIVQLTGI 74

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +   +  + E + +  I+   +         +N+ FD  +      R  Y S      
Sbjct: 75  EDKDVRKAPLFE-DIAGTIYSLLAE---TTFVAHNVNFDFPFLNAELERAGYPSLS---- 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +D +                   A SF+L+DL  +  IEH + H A +D  A
Sbjct: 127 -----IPAIDTVTLSQILL----------PTAKSFRLRDLTSSLHIEHDHPHSAVSDAEA 171

Query: 184 TLALV 188
           T  L+
Sbjct: 172 TAELL 176


>gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 203

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 54/195 (27%), Gaps = 30/195 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G   A+ DR  + A V V      ++  +                  +
Sbjct: 1   MKPIAVIDFETTGLSPAMGDRATEVAIVLV-EGGRVVDRFQSLM---NAGVRIPAFITSL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT            + +  +           +  +N  FD  +      R        
Sbjct: 57  TGITNAMVASAP----DAATVMTDANRFVGNAPLVAHNASFDRKFWEAELSRAGE----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
                          RA   F+   +        A S KL  L   + +     AH A A
Sbjct: 108 ---------------RASQPFACTMLVSRRLYPQAPSHKLGVLVDYHHLPKAGRAHRALA 152

Query: 180 DVYATLALVWLIREK 194
           D     +L+  I+  
Sbjct: 153 DAEMAASLLGQIQHD 167


>gi|27367395|ref|NP_762922.1| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6]
 gi|27358964|gb|AAO07912.1| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6]
          Length = 204

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 62/213 (29%), Gaps = 35/213 (16%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G    L DR  +   V++    E ++S +         +         T
Sbjct: 5   NSVVVLDFETTGLSPNLGDRAIEIGAVKI-VDGEVVDSFQQLM---NPGFRVSSFIESYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT            E      +F +  N   +  +N  FD  +      R   D     
Sbjct: 61  GITNNMLRSAP-SCDEVMASFSEFIAGEN---LIAHNASFDKRFLDAELERINCD----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKAD 180
                              F+   +        A S KL +L     I++    H A AD
Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDGIFHRALAD 156

Query: 181 VYATLALVWLIREKKPKL-----FEYLYDYRNK 208
              T  L  L+ E+                 +K
Sbjct: 157 AQMTAKLWLLMVEELEHSGIANPSFQFMQTVSK 189


>gi|320160945|ref|YP_004174169.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
 gi|319994798|dbj|BAJ63569.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
          Length = 934

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 57/203 (28%), Gaps = 32/203 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N +V  D ET G D   D   +   VR                              +T
Sbjct: 4   MNMYVAIDIETTGLDPEKDCIIEIGAVRF-SNRRVEAEWSSL---IKPTKNIPSFITQLT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT     +   +  +    +  F    N  I+G+N      +  +     N        
Sbjct: 60  GITNDMVRKAPTI-QDVIGDLAHFV--GNCPIVGHNIRFDLSFLQKQHILWN-------- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N   D  ++                    A+ + L  LA + GI     H A  D 
Sbjct: 109 ----NHVIDTYELA-------------SVLLPTASRYNLGVLAQSLGILLPATHRALDDA 151

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T AL   + EK  +L   L +
Sbjct: 152 RVTHALFIALLEKASELPVDLLN 174


>gi|149183101|ref|ZP_01861552.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. SG-1]
 gi|148849178|gb|EDL63377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. SG-1]
          Length = 933

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 28/208 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            +  V+ D ET G      D+  Q A + V +    ++S   F                +
Sbjct: 3   PHKIVVVDLETTGNSPKKGDKIIQLAAMVV-QGGAVVDSYTTF---VNPGITIPSFIEEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI            +E + ++ +     +  +   +N++FD  + +       Y     
Sbjct: 59  TGIHDGMVKDAPE-FSEIAPKVLELL---DGAVFCAHNVQFDLGFLQAELEEAGY----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +D +++ +                  A S+KL +L+    + H   H A +D
Sbjct: 110 -NPFSGPSFDTVELAKI-------------TLPTADSYKLTELSDRFSLNHSRPHQADSD 155

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNK 208
              T  L+    EK  KL     +   K
Sbjct: 156 ALVTAELLIHFIEKLAKLPLVTLEQLEK 183


>gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 74/253 (29%), Gaps = 29/253 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     D   + AGV++ +  E I+  E F       +      + +TGIT    
Sbjct: 1   DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56

Query: 69  LRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                        + + F   +   I+  +N  FD  +    + +             N+
Sbjct: 57  KGSDP-----IDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------KAENA 105

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D L++ R +Y                 + +L  L     I     H A  D  AT  L
Sbjct: 106 VVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYL 152

Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
            W + +   ++ +  Y     + + +    +   P         A             + 
Sbjct: 153 AWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI 212

Query: 248 RYKDSVIGCNLSG 260
            Y   V     S 
Sbjct: 213 NYFYRVPRIPRSQ 225


>gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 876

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 84/209 (40%), Gaps = 26/209 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             + +++D E+ G DV  D   Q A +++++  E ++  E F            ++ ++ 
Sbjct: 507 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKKSVK----DSYYVH 562

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G + +   R G  + +  +   ++    ++ I+G+N     +     +   N       +
Sbjct: 563 GFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKT 620

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      +D LD+ R  Y              G  ++KL++L+     +H  +HDA  D+
Sbjct: 621 F------YDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 661

Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209
            AT  L+   I EK  +         +K+
Sbjct: 662 IATGELLVRAINEKIRETSMERMALMSKH 690


>gi|295693537|ref|YP_003602147.1| DNA polymerase iii [Lactobacillus crispatus ST1]
 gi|295031643|emb|CBL51122.1| DNA polymerase III [Lactobacillus crispatus ST1]
          Length = 318

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 24/206 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ + D ET G     DR  +  GV+V R  + ++          ++ +P      + GI
Sbjct: 32  NYTMLDIETTGLYPYRDRITELGGVKV-RNGQIVDQYTNLVKFSKNNSVP-AFITKLNGI 89

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++ +++G+   +  R   +F    +  IIGYN               NF       + 
Sbjct: 90  TEEQIVKEGIPAEQAIREFREFI--GDDVIIGYNVNFDL----------NFLYDLSQKYG 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +DV+R    +                 +L D     GI  V AH    D   
Sbjct: 138 LPVLDNDYVDVLRLARTYY----------PRERHNRLLDCMQRAGIAQVEAHHGLQDSLD 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209
           T+ +     +            + KN
Sbjct: 188 TIKVYDDFAQHFTDDLLEKAQSKIKN 213


>gi|90023051|ref|YP_528878.1| DNA-directed DNA polymerase [Saccharophagus degradans 2-40]
 gi|89952651|gb|ABD82666.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
          Length = 215

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 57/201 (28%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           + N  V+ D+ET G    + DR  +   VR+    E ++  +         +        
Sbjct: 11  LANSVVVLDFETTGLSPDMGDRAIEIGAVRL-HNGEIVDRFQALM---NPGFQISGFIAS 66

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            TGI      +      E       +    N   +  +N  FD  +     YR       
Sbjct: 67  YTGIDNSMLAKAP-PCDEVMDAFANYIGNDN---LVAHNASFDKRFLDAELYRIGRSY-- 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178
                     D    + A     P+              KL  L     ++   A H A 
Sbjct: 121 --------SGDFTCSLLAARRLFPNAEN----------HKLGTLVKHTKLQSDGAFHRAL 162

Query: 179 ADVYATLALVWLIREKKPKLF 199
            D   T  +  ++  +  + +
Sbjct: 163 YDSEMTAKVWMVMLMQLQQAY 183


>gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
 gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
          Length = 328

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 30/216 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +  + + D+ET G + A  DR  +   V V       +  E    +   D      A +I
Sbjct: 14  SKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLI-RVHRDI----GAQWI 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I+  + +     E   +R +    +     +   +N+ FD  +  + + R   D    
Sbjct: 69  HHISAVELIHAPEFEG-IARELRDLLA---GRVFVAHNVAFDSKFLLSEYRRLGTDIPVN 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           S         +L  M+   +    G              L D     GI++ +AH A +D
Sbjct: 125 SHT-------MLCTMKLSRSLIGVG-------------SLADCCREFGIDNEDAHSALSD 164

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
            +AT  L+  + +  P+   +        +  +   
Sbjct: 165 AHATALLLGRLMDADPEWSGWRRRLDAAEEAGEHWP 200


>gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
 gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
          Length = 474

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 58/189 (30%), Gaps = 28/189 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G     DR  + A +R++R  + ++  E             P    +TGI 
Sbjct: 7   YVLVDLETTGAHPLRDRITEIAILRIER-GQLVQRWESL---INPGVPIPPTIQGVTGID 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A  +  +         C+   +N RFD  + +  +     +        
Sbjct: 63  DTMVAGAP-DFAAVADTVAALLDD---CVFVAHNARFDYGFLKTAYAALGREFDA----- 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +L  ++   A  PD  +            L  +   +G+     H A  D    
Sbjct: 114 -----PVLCTVKLSRALYPDHHR----------HGLDAIIERHGLACGARHRAMGDTEVL 158

Query: 185 LALVWLIRE 193
                ++ +
Sbjct: 159 WQFARVVEQ 167


>gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
 gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
          Length = 874

 Score = 94.5 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 25/195 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V++D E  G D   D   Q AG+R+ R  +          +         ++  +  
Sbjct: 511 ENIVVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAEF----KRLLRARRSVGDSYRVHK 566

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+     ++G       R    F       +I  +N+ +D     +   R       +  
Sbjct: 567 ISDAILQQEGEEPEAVLREFCAF---AEGAVIVGHNVTYDLSILGSELARLGLPPLSY-- 621

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 +D LD+ R  Y                 + KL+ L     + H + HDA  DV 
Sbjct: 622 ---QRYYDTLDIFRRFY-------------PNLPNHKLEYLGEFCKVSHRSTHDAMDDVC 665

Query: 183 ATLALVWLIREKKPK 197
           AT  ++    EK  +
Sbjct: 666 ATAEILTYAIEKNIR 680


>gi|219684048|ref|YP_002470430.1| hypothetical protein CKR_P20 [Clostridium kluyveri NBRC 12016]
 gi|219570556|dbj|BAH08539.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 444

 Score = 94.5 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 91/346 (26%), Gaps = 33/346 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++FV+ D ET G +   D   + A  +     E I++          +    P    I  
Sbjct: 132 DNFVVVDLETTGLEPTRDYIIEIAAAKY-ENNEIIDTYTTL---VNPEVFIPPNITNINH 187

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             E    +  F +      +  +N  FD  +                 
Sbjct: 188 IDNDMVKDCP----EIKEVLPGFMNFIGQLPLVAHNAPFDIKFLNANLALLGLY------ 237

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L + R                    + KL  +     I+  ++H A  D Y
Sbjct: 238 -LNNPIIDTLPISR-------------KLFSEIENHKLGTIKEYLNIDVQDSHRALPDCY 283

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
               +   +     +  +        +    L   +  + +  +        +       
Sbjct: 284 VCGQI--YLEYSTKEKNKKALANIKLHSDIGLNKEECYSIVKEILKKHNKDLTYVRYG-F 340

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
            + +   +       L    + +  L    LA+      D        P  +   NK  I
Sbjct: 341 TSNYFDIRAFYNFLRLKLKGKKYYALLDNSLAEINSMIPDLTLKYEVAP--KSESNKIRI 398

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP 348
           L+                  +C++++   R   ++ ++  A Y   
Sbjct: 399 LINSPEDLYILEPIIIQAFDKCIDSMEYYRNNVSVAEKNIAEYLNT 444


>gi|260578114|ref|ZP_05846035.1| exonuclease [Corynebacterium jeikeium ATCC 43734]
 gi|258603753|gb|EEW17009.1| exonuclease [Corynebacterium jeikeium ATCC 43734]
          Length = 198

 Score = 94.5 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 27/200 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G     +R  + A + + R  E  +           +     E   +TGI+ 
Sbjct: 13  IVIDLETTGLRPQEERIIEIAALHI-RNGELQDKYTTL---LNPNLSVPQEITDLTGISD 68

Query: 66  QKALRDGVVEAEFSRRIHQFFSVP------------NTCIIGYNNIRFDDYYSRNIFYRN 113
                     +E    +  F                +T  +  +N+ FD  + ++   R 
Sbjct: 69  GLLADKP-TFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRT 127

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
              +   +      R             + +  +     +    ++L ++A    I H  
Sbjct: 128 QLKNSADANRPYTPRL----------VCTAEASRTLIPRESVGRYRLGNVASYLKIPHRP 177

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A +D  AT  ++  +  
Sbjct: 178 LHRAMSDALATYDVLRALST 197


>gi|291300433|ref|YP_003511711.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569653|gb|ADD42618.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
          Length = 410

 Score = 94.5 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 60/199 (30%), Gaps = 28/199 (14%)

Query: 5   FVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + ++D ET G       R  + A V  D +     +          D    P+   I GI
Sbjct: 2   YAVFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTL---LNPDRDLGPQ--HIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             ++ +       + + ++ Q  S      +  +N+ FD  +    F R           
Sbjct: 57  KARQVIDAPK-FGDIAGQLIQMLS---GRTLVAHNLPFDLRFLSAEFERLG--------- 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +   +      + W +      S  L +   A G++    H A +D  A
Sbjct: 104 ---------HQLTYNHHLGVCTMNWSTTFLEGASRSLPECCKAAGVQLTGWHSALSDAEA 154

Query: 184 TLALVWLIREKKPKLFEYL 202
           T AL+            + 
Sbjct: 155 TAALLKHYINAARGGVPWH 173


>gi|310287853|ref|YP_003939111.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17]
 gi|309251789|gb|ADO53537.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17]
          Length = 180

 Score = 94.5 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 68/198 (34%), Gaps = 28/198 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + +V+ D ET G     D   +F  V+V    + +++ +            +P    +
Sbjct: 7   LPDDYVVLDLETTGVSWYRDTIIEFGAVKV-VDRKPVDTYQQL---VNPMRNLNPFITQL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           TGITP        ++      +  F        +IG+N +RFD  +      R       
Sbjct: 63  TGITPDMLEPAPTLD----TVLPDFLRWCGDDAMIGHNIMRFDIKFIDLAAQRIL----- 113

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                 N   D L + R++Y                   +L DL     I  V  H A +
Sbjct: 114 -HHAVPNRIIDTLQMSRSMYPQYN-------------RHRLVDLIQRFDIADVEEHRALS 159

Query: 180 DVYATLALVWLIREKKPK 197
           D   T      +R+++ +
Sbjct: 160 DAEQTQMCFEYMRDEQRR 177


>gi|300087648|ref|YP_003758170.1| DNA polymerase III subunit epsilon [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527381|gb|ADJ25849.1| DNA polymerase III, epsilon subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 260

 Score = 94.5 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 51/194 (26%), Gaps = 27/194 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V +D ET G +   DR  +   V++     +    E               A  I GIT
Sbjct: 10  LVFFDLETTGLNPLKDRIVEITLVKLLPDGTE----ESRSRLIDPGIPIPETATAIHGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +           ++    F       + G+N  +FD       F R   D        
Sbjct: 66  DDRVAGQP-SFNRIAKSFRDFLE--GCDLCGFNIKKFDIPMLEAEFRRAGVDF----SRA 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G    D   +    +    +                   +L  G +  N H + AD  A 
Sbjct: 119 GRRIIDTQVIFHKFHPRGLE----------------AAYSLYCGKQLANLHSSDADARAC 162

Query: 185 LALVWLIREKKPKL 198
             ++          
Sbjct: 163 AEILSAQLAAHESE 176


>gi|297205524|ref|ZP_06922920.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
 gi|297150102|gb|EFH30399.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
          Length = 317

 Score = 94.5 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 66/211 (31%), Gaps = 24/211 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + + + D ET G  +  DR  + AG++V R  + +         P D+ +P      + G
Sbjct: 33  DDYTMLDIETTGLSLYRDRITELAGIKV-RNGKVVAEYSQLVKYPKDNKVPR-FITKLNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I     L +G+   E       F       I+GYN               NF       +
Sbjct: 91  IDEALILANGMPVKEAITEFRNFI--GGDVIVGYNVNFDL----------NFIYDLWEKF 138

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  + +DV+     F              +  +L D     GI    AH    D  
Sbjct: 139 QLKKLSNNYIDVLHFSRVFF----------KKESHNRLLDCIRRLGISESEAHRGLKDSL 188

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            T A+  + R++             K+ +  
Sbjct: 189 DTKAVFDIYRKQFTPEMLNEVKDSLKSCVLT 219


>gi|260061966|ref|YP_003195046.1| DNA polymerase III subunit epsilon [Robiginitalea biformata
           HTCC2501]
 gi|88783528|gb|EAR14699.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata
           HTCC2501]
          Length = 456

 Score = 94.5 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 74/240 (30%), Gaps = 31/240 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G  +  +R  + A   +D+     +S                    +TGIT
Sbjct: 2   YTVVDIETTGNGIYGNRITEIALFNIDQ-GRIADSYSTL---VNPGCEIPAFITGLTGIT 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      +E + +I  F    +  +   +++ FD    R  F R   D  R     
Sbjct: 58  TAMVRNAP-DFSEIAPKIDAF---SSGRVFVAHSVNFDYPIVRKEFERCGLDFGRKK--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L  L  +  I   + H A  D  AT
Sbjct: 111 -------LCTVRLSRRVF----------PGLRSYSLGKLCRSLEIPLSDRHRAAGDARAT 153

Query: 185 LALVWLIREK--KPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             L+    E+           + R++       + +++   L    G++    S   +I 
Sbjct: 154 ALLLLRAMEQPGGQDTIAGFLNARSREGTLPPHLPLESFRQLPEAPGIYFFKDSKGNVIY 213


>gi|83749368|ref|ZP_00946363.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
 gi|207742873|ref|YP_002259265.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
           IPO1609]
 gi|83723945|gb|EAP71128.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
 gi|206594267|emb|CAQ61194.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
           IPO1609]
          Length = 242

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + A  DR  +   V +            F+     +   DP A+ + GIT
Sbjct: 4   IVLDTETTGLNAATGDRVIEIGCVEL-VNRRLTGRNLHFY--INPEREIDPGAMAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    I  +       I   +N  FD  +    F R    S      +
Sbjct: 61  NEFVADKPK-FAEVVAEIRDYVQGAEAII---HNAAFDLGFLDMEFRRLGLPS-FREHLD 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
           G+   D L   R ++                    L  L    G+   H   H A  D  
Sbjct: 116 GH--IDTLLEARRMFPG--------------KRNSLDALCDRLGVSNAHRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQNTLVIDML 180


>gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis
           CV56]
          Length = 794

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 99/319 (31%), Gaps = 42/319 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D E      + ++  Q   V V    E +E+               P    +T
Sbjct: 4   MTRYAVVDLEATDAHSSENKIIQIGIVLV-EDGEIVETFSTE---VNPHEPLLPRISELT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ ++        +E + ++ +  +     +   +N RFD       F     +     
Sbjct: 60  GLSDKQLKTAPE-FSEVAAKVRELLTDS---VFVAHNARFDYGLLEKSFLNAGLEF---- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             N   R D +D+ R  Y                  + L+ L+    + H + H A +D 
Sbjct: 112 --NEMLRVDTVDLARVFYPTFE-------------KYGLESLSEKLDLAHDHPHAAVSDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYD----------YRNKNQLRKLIDIQNMTPLVHVSGMFG 231
           YAT  L+  I  K  KL   + +          + +K  L++ +D   + P         
Sbjct: 157 YATAELLLKIEAKIQKLPRSVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNI 216

Query: 232 ASRSNTALI---APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
           A+R   A +   +P+          I           + L    L +   T         
Sbjct: 217 ATRKFRASVSKKSPLTALSANFSENISRLGLSSRSKQEKL--AHLMETELTHLQASFIEA 274

Query: 289 PVPIKEVHLNKCPILMPID 307
           P  + + +    PIL    
Sbjct: 275 PTGLGKTYGYLLPILASGK 293


>gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 482

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 58/192 (30%), Gaps = 28/192 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + +     D E+ G     DR  + A +RV    E +   E      A      P    +
Sbjct: 3   LPSRLAFIDVESTGAHPVRDRITEIAILRV-EDGEVVARWESL---VAPGQPIPPLIEEV 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E   +  +         C+   ++ RFD  + RN F R   +    
Sbjct: 59  TGISDAMVAEAPAFEV-LADTVAALLE---GCVFVAHSARFDYGFIRNAFTRIGREFEA- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     +L  ++   A  P+  +            L  L   +G+     H A  D
Sbjct: 114 ---------PVLCTVKLSRALYPEHHR----------HGLDALIERHGLVCAARHRAMGD 154

Query: 181 VYATLALVWLIR 192
           V      V  + 
Sbjct: 155 VEVLWQFVRGLE 166


>gi|152979979|ref|YP_001352248.1| hypothetical protein mma_0558 [Janthinobacterium sp. Marseille]
 gi|151280056|gb|ABR88466.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 195

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 28/192 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    +  D ET G ++  DR  +   V VD     I+    F                +
Sbjct: 3   LNEKLIFVDLETTGANLVNDRITEIGIVAVDPDGC-IDRWSTF---VNPGRPIPEFIQGL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ +      + E   +  + +        +   +N RFD  +  + F R+ +     
Sbjct: 59  TGISDEMVESAPMFET-LADTVRERLQDG---LFIAHNARFDYGFLHHAFVRSGHVLNA- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    ++L  ++   A                   L  L   + +     H A AD
Sbjct: 114 ---------EMLCTVKLSRALF----------PAEKKHNLDSLIARHDLIPEARHRALAD 154

Query: 181 VYATLALVWLIR 192
                 L   + 
Sbjct: 155 ADLLWQLWRKLN 166


>gi|327440746|dbj|BAK17111.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046]
          Length = 926

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 75/232 (32%), Gaps = 28/232 (12%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +  + I D ET G   A  DR  Q A + + + WE ++    F                +
Sbjct: 4   SQKYAIVDIETTGHSPASGDRMIQIA-IVIMQGWEIVKKYSTF---INPGKPIPLFIQDL 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT +      +    ++  I++        +   +N  FD  + +  F R        
Sbjct: 60  TNITDEDVKDA-LPFEAYADYIYELLE---GAVFVAHNTDFDLNFLQAEFNRAGL----- 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D +++                    + S+KL DLA    I   +AH A  D
Sbjct: 111 -SKWHGKKIDTVEL-------------TKILFPMSLSYKLSDLANDFNILLQSAHRADDD 156

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA 232
             AT  L+    E+   L     +  +K   R   D+  +     V     A
Sbjct: 157 ALATAYLLKHCWEELLTLPLVTLEQLHKRSFRLRTDLAQLFFDALVIKRNKA 208


>gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403]
 gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 794

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 99/319 (31%), Gaps = 42/319 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D E      + ++  Q   V V    E +E+               P    +T
Sbjct: 4   MTRYAVVDLEATDAHSSENKIIQIGIVLV-EDGEIVETFSTE---VNPHEPLLPRISELT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ ++        +E + ++ +  +     +   +N RFD       F     +     
Sbjct: 60  GLSDKQLKTAPE-FSEVAAKVRELLTDS---VFVAHNARFDYGLLEKSFLNAGLEF---- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             N   R D +D+ R  Y                  + L+ L+    + H + H A +D 
Sbjct: 112 --NEMLRVDTVDLARVFYPTFE-------------KYGLESLSEKLDLAHDHPHAAVSDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYD----------YRNKNQLRKLIDIQNMTPLVHVSGMFG 231
           YAT  L+  I  K  KL   + +          + +K  L++ +D   + P         
Sbjct: 157 YATAELLLKIEAKIQKLPRSVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNI 216

Query: 232 ASRSNTALI---APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
           A+R   A +   +P+          I           + L    L +   T         
Sbjct: 217 ATRKFRASVSKKSPLTALSANFSENISRLGLSSRSKQEKL--AHLMETELTHLQASFIEA 274

Query: 289 PVPIKEVHLNKCPILMPID 307
           P  + + +    PIL    
Sbjct: 275 PTGLGKTYGYLLPILASGK 293


>gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames]
 gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne]
 gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0488]
 gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0442]
 gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0193]
 gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0465]
 gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0389]
 gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0174]
 gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|229603113|ref|YP_002867802.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0248]
 gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
           CNEVA-9066]
 gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055]
 gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger
           B]
 gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum]
 gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
           Australia 94]
 gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. Ames]
 gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis
           str. Sterne]
 gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0488]
 gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0193]
 gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0442]
 gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0389]
 gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0465]
 gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0174]
 gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0248]
          Length = 315

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +              + +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPKRPIPDRIMSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLI 191
            A+    
Sbjct: 162 AAVYQKC 168


>gi|209809036|ref|YP_002264574.1| exonuclease [Aliivibrio salmonicida LFI1238]
 gi|208010598|emb|CAQ80976.1| exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 227

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           + N  V+ D+ET G      DR  +   V++      ++  +         +        
Sbjct: 26  LANTVVVLDFETTGLSPNQGDRAIEIGAVKL-ENGVIVDRFQKLM---NPGFRVSSFIAN 81

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            TGIT    +       + +  +H+F      C +  +N  FD  +          D   
Sbjct: 82  YTGITNAMLMGAD----DCATVMHEFADFIQGCNLVAHNASFDQRFLDAELDAIQRD--- 134

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178
                                F+   +        A S KL +L   + I++    H A 
Sbjct: 135 -----------------YDGTFACSLLVSRRLTQEAPSHKLGELVAYHQIDNDGVFHRAL 177

Query: 179 ADVYATLALVWLIREKKPKLF 199
           AD   T +L  ++ +     +
Sbjct: 178 ADAEVTASLWQVLLDTLESDY 198


>gi|254419681|ref|ZP_05033405.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
 gi|196185858|gb|EDX80834.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
          Length = 241

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 29/190 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   + + +          F      + L  P+A+ + GIT
Sbjct: 5   IVLDTETTGFDPKTGDRLIEVGCIEI-QDLLPTGR--TFHRFVNPERLIPPDAIRVHGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             K         E +  + +F        +  +N  FD  +    +              
Sbjct: 62  DDKVKDAPKFH-EIADDLIEFI---GDAPMIAHNAGFDRNFIDFEYKLCGRPI-----TG 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + +A +   P+               L  L     +  V    H A  D  
Sbjct: 113 ETRWIDTLKLAQARFPGMPN--------------SLDALCKRFKVSLVERTLHGALIDAR 158

Query: 183 ATLALVWLIR 192
               +   +R
Sbjct: 159 LLAEVYLELR 168


>gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
 gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
          Length = 1432

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 64/473 (13%), Positives = 128/473 (27%), Gaps = 44/473 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ +D ET G         +F    + +    +   + F                +TGIT
Sbjct: 401 YISFDIETTGLSPRYHEIIEFGASII-KNGSIVAREQFFIKASKP---LSSFTTNLTGIT 456

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +    +G+       RI + F      I   +N +FD  +       N Y     S+  
Sbjct: 457 DKMLQEEGIELKTALERILKLFENK---IALAHNAQFDMNFVFQKLLDNCYAIPSISF-- 511

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D L + R I+                +  +L D     G      +AH A  D  
Sbjct: 512 ----VDTLMISRIIF-------------PNKSKHRLGDYTSNLGINYSVDDAHRADYDAE 554

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
                         +L        +  Q   L   +    +  ++      +    L+  
Sbjct: 555 ILAQAWIASISHLAQLNLNNLSDLHNYQNSNLHAKKFSNEVSIIAKNQIGLKKLFKLVTK 614

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +    +        +      +      L T   +   ++   IK     + P 
Sbjct: 615 TLTERFFDSPKLFLEDLEKDQDLLVGSAGLNGFLLNTLFYKSDLVLREYIKLYDYVEIPS 674

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           +       K   E      ++  + L  L+           A+ +  Y          L 
Sbjct: 675 ISN----FKHWIEYEDFTLEQIQDGLRYLINLALEHSKIVIAVGDVRYIDKPGKAAYDLL 730

Query: 362 DGFFADVDRQI-MDRILRTAPEQLSTLNLPFSDRRL-------PELFFRYRARNFPHTLS 413
               A    +  +    R    +        +++ L        EL ++   +N    L 
Sbjct: 731 IYAKAIGGDRHYLYEYRRRHNLKTPERFFLTTEQMLEEFEFLGKELAYKIVVQN--TNLI 788

Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
                +  E  KK L   + ++   KL+ L  +    +  E L   +   ++ 
Sbjct: 789 ADSIDNI-EVIKKDLYTPKFDDSHEKLKDLVYKTAHKKYGEVLPEIIENRIKK 840


>gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit
           [Lactococcus lactis subsp. lactis KF147]
          Length = 794

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 99/319 (31%), Gaps = 42/319 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D E      + ++  Q   V V    E +E+               P    +T
Sbjct: 4   MTRYAVVDLEATDAHSSENKIIQIGIVLV-EDGEIVETFSTE---VNPHEPLLPRISELT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ ++        +E + ++ +  +     +   +N RFD       F     +     
Sbjct: 60  GLSDKQLKTAPE-FSEVAGKVRELLTDS---VFVAHNARFDYGLLEKSFLNAGLEF---- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             N   R D +D+ R  Y                  + L+ L+    + H + H A +D 
Sbjct: 112 --NEMLRVDTVDLARVFYPTFE-------------KYGLESLSEKLDLAHDHPHAAVSDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYD----------YRNKNQLRKLIDIQNMTPLVHVSGMFG 231
           YAT  L+  I  K  KL   + +          + +K  L++ +D   + P         
Sbjct: 157 YATAELLLKIEAKIQKLPRSVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNI 216

Query: 232 ASRSNTALI---APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
           A+R   A +   +P+          I           + L    L +   T         
Sbjct: 217 ATRKFRASVSKKSPLTDLSANFSENISRLDLSSRSKQEKL--AHLMETELTHLQASFIEA 274

Query: 289 PVPIKEVHLNKCPILMPID 307
           P  + + +    PIL    
Sbjct: 275 PTGLGKTYGYLLPILASGK 293


>gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 233

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 27/185 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G +   DR  +  GV +  ++     T   +  P        EA+ + GI+ 
Sbjct: 4   IVFDTETTGLERLEDRVIEIGGVELINKF-PTGRTFHKYINPQ-GRQVHAEALAVHGISN 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++ L      AE      +FF   +   +  +N  FD  +      R      +      
Sbjct: 62  EQLLDKP-TFAEILDEFLEFF---DGAKLVAHNAMFDLGFINAELARLGQAEIQVE---- 113

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183
               D L + R  +   P+               L  L    GIE+ +   H A  D   
Sbjct: 114 -RVVDTLALARRKHPMGPN--------------SLDALCKRYGIENGHRTLHGALLDSEI 158

Query: 184 TLALV 188
              + 
Sbjct: 159 LAEVY 163


>gi|332291057|ref|YP_004429666.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169143|gb|AEE18398.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 458

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 93/328 (28%), Gaps = 39/328 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D   + ++           +       V +TGI 
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIYKFDGH-QVVDQFITL---VNPERPIQAFVVGLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E ++RI +       CII  +N +FD       F R  Y         
Sbjct: 58  NGMLTDAPKFH-EIAKRIIEITE---GCIIVAHNAQFDYRILSLEFDRLGYP-------- 105

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                        G  S+ L  L    GI   N H A  D  AT
Sbjct: 106 ------------YERTTLCSVELSQELLPGHDSYSLGKLTKTLGIAMSNRHRADGDAIAT 153

Query: 185 LALVWLIREKKPK----------LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           + L  L+ EK P+            +   D + K+ +R +     +  + +V+G      
Sbjct: 154 VKLFKLLLEKDPEKTIITKAIRSFPKKHMDTKLKDLIRSVPSETGVYFMHNVNGTIIYIG 213

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            +  +   +  H    +            V       +L   L   + E+K   P   + 
Sbjct: 214 KSKNMKKRLTQHFTNDNRKSKQIQDQVETVTYQTTGTELIALLKE-NAEIKRHKPKFNRA 272

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHK 322
           +   K  + +      + +         
Sbjct: 273 LRRTKFKVQLTHYTDSEGYIHLKTERAD 300


>gi|269215783|ref|ZP_06159637.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
 gi|269130733|gb|EEZ61809.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
          Length = 291

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 26/181 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G +   D   + A +RV R   + ++ +   C              +TG++
Sbjct: 128 YVVVDIETTGLNPNKDEIIELAAIRV-RGGRETDAFQ---CLVRCGGELSDAIAKLTGLS 183

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + + +G++         +F S     +I  +N  FD  + ++      +D +   +  
Sbjct: 184 HSRLMAEGLILENALMNFLEFVSD---DLIVAHNAEFDIGFIQSACEELDWDDFDNDY-- 238

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R              +    +  +L  LA    +E+   H A +D   T
Sbjct: 239 ----LDTLALAR-------------KKLPQISDHRLSSLAERLHLENRQPHRALSDCRLT 281

Query: 185 L 185
            
Sbjct: 282 H 282


>gi|223937241|ref|ZP_03629147.1| DNA-directed DNA polymerase [bacterium Ellin514]
 gi|223894026|gb|EEF60481.1| DNA-directed DNA polymerase [bacterium Ellin514]
          Length = 199

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 5/125 (4%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +VI+D ET G     D   Q A VR+        S++ FF                
Sbjct: 1   MHQDYVIFDLETTGLSSYQDEIIQIAAVRM-SNGVVC-SSDSFFSYVNPGRSISSFITSY 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT Q       V     +   ++       +I +N  RFD  +      RN   +   
Sbjct: 59  TGITNQDVGDAPRV-GTVLKDFSRY--AGKATLIAHNGHRFDMKFLHAGCSRNALPTRAV 115

Query: 121 SWDNG 125
           ++ + 
Sbjct: 116 NYHDS 120


>gi|171317951|ref|ZP_02907125.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171096851|gb|EDT41725.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 205

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 39/225 (17%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    L DR  + A + + R  E ++  +              + V +
Sbjct: 1   MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGEIVDRYQSLM---NAGRRIPSDVVAL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +         ++  +    F        +  +N  FD  + +             
Sbjct: 57  TGITNEMIASAP-PVSQVMKEAAAFV---GNHPVVAHNAGFDKRFWQAELGMLG------ 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                         M A +AF+   +        A S +L  LA    +     AH A  
Sbjct: 107 --------------MAAEHAFACTMLVARRIYPHARSHRLSSLADMLRLPQTGRAHRAMV 152

Query: 180 DVYATLALVWLIREKKPKLFE---------YLYDYRNKNQLRKLI 215
           D      L   ++      +                +K ++    
Sbjct: 153 DAEIASHLWCRLQRDIGATYGVRHIDHGLMSRLQTTSKAKVATFF 197


>gi|169334141|ref|ZP_02861334.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258858|gb|EDS72824.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM
           17244]
          Length = 204

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 26/198 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G +   +   +   V+V R  + ++    F   P  D +  PE   +T
Sbjct: 21  PEDYTVIDIETTGLNPDENEIIEVGAVKV-RDRKIVDEFSSF-VSPKKD-IISPEIRKLT 77

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI          +E +   R ++F       ++G+N               NF       
Sbjct: 78  GIDEAMIEGADQIE-DVIPRFNEFID--GEILLGHNVNFDI----------NFLYDNYER 124

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + +     D +D+++     SP+              KL+ +    GI+    H A +D 
Sbjct: 125 YSDFYLSNDYVDLLKISRKLSPEFEN----------HKLETVLKKLGIKVDQQHRAVSDC 174

Query: 182 YATLALVWLIREKKPKLF 199
                     RE     +
Sbjct: 175 IDAHHCFEKYRETIIAQY 192


>gi|115359655|ref|YP_776793.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
 gi|172064467|ref|YP_001812118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
 gi|115284943|gb|ABI90459.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
 gi|171996984|gb|ACB67902.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 205

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 39/225 (17%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    L DR  + A + + R  E ++  +              + V +
Sbjct: 1   MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGEIVDRYQSLM---NAGRRIPSDVVAL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +         ++  +    F        +  +N  FD  + +             
Sbjct: 57  TGITNEMIASAP-PVSQVMKEAAAFV---GNHPVVAHNAGFDKRFWQAELGMLG------ 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                         M A +AF+   +        A S +L  LA    +     AH A  
Sbjct: 107 --------------MAAEHAFACTMLVARRIYPHARSHRLSSLADMLRLPQTGRAHRAMV 152

Query: 180 DVYATLALVWLIREKKPKLFE---------YLYDYRNKNQLRKLI 215
           D      L   ++      +                +K ++    
Sbjct: 153 DAEIASHLWCRLQRDIGATYGLRHIDHGLMSRLQTTSKAKVATFF 197


>gi|319901725|ref|YP_004161453.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
 gi|319416756|gb|ADV43867.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
          Length = 256

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 84/256 (32%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +     EA  +
Sbjct: 5   LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----EAKTMRINPEMHIPAEASAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +   +      E +R I        + + G+N+ RFD       F R   D    
Sbjct: 61  HGIYDEDVAKCP-TFKEVARNIANDIE--GSDLAGFNSNRFDIPVLAEEFLRAGVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ R  +           +   + ++K        G    +AH A+AD
Sbjct: 114 -----------IDMSRRKFVDVQVIFHKMEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157

Query: 181 VYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  + +  +   +    +  +     +  + +     M    H   +F   +     
Sbjct: 158 TRATYEVLMAQLDRYEDLQNDVAFLADYSSFNKNVDFAGRMVYDEHGVEIFNFGKYKGMS 217

Query: 240 IAPVA-WHPRYKDSVI 254
           ++ V    P Y   ++
Sbjct: 218 VSEVLKRDPGYYSWIL 233


>gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
           (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
           (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 960

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G +   D   Q AG+R   + E +                      +T I+
Sbjct: 24  FVAIDIETTGLNSEWDEIIQIAGMRFKGE-EVVNQFVSL---VKPKGKVPKFIEHLTHIS 79

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ+         E  +    F       I+  +NI FD  +       N           
Sbjct: 80  PQELKTAP-PIKEVLKDFCNFI---GDSILVGHNIGFDFNFLNQFIVDNGGFPISNMH-- 133

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               WD  ++ R    F+ D              KL  L    GIE +NAH A AD  AT
Sbjct: 134 ----WDTAEIGRIYLPFTTD-------------HKLSTLVSFFGIELMNAHQADADALAT 176

Query: 185 LALVWLIREKKPKLFEYLYDYR 206
             L   +       + Y+ + R
Sbjct: 177 GKLFNALTNYILNHYGYMLNAR 198


>gi|283798273|ref|ZP_06347426.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074053|gb|EFE11417.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 244

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 21/191 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61
           V +D ET G +    +  + A +RV++         +S +VF   P  + +P  + V +T
Sbjct: 15  VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-KIVELT 73

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++   +G+ E E + R  +        ++  +N +FD  ++  +  R+        
Sbjct: 74  GITDEQLENEGITETEAAARFTELIG-GGRVLLVAHNAQFDLLFTAEMLRRHGNGGP--E 130

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L V +   A+                     L      +  N+H A  DV
Sbjct: 131 VLKAADYLDSLTVYKDRRAYPHKLAN-------------AILTYKLEDKVQNSHRAIDDV 177

Query: 182 YATLALVWLIR 192
            A   +   + 
Sbjct: 178 AALFEVCKAMD 188


>gi|307717338|gb|ADN88722.1| DNA polymerase III [Listeria welshimeri]
 gi|307717340|gb|ADN88723.1| DNA polymerase III [Listeria welshimeri]
 gi|307717362|gb|ADN88734.1| DNA polymerase III [Listeria welshimeri]
 gi|307717368|gb|ADN88737.1| DNA polymerase III [Listeria welshimeri]
 gi|307717392|gb|ADN88749.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 75/252 (29%), Gaps = 27/252 (10%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     D   + AGV++ +  E I+  E F       +      + +TGIT    
Sbjct: 1   DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
                ++      + +F       I+  +N  FD  +    + +   +         N+ 
Sbjct: 57  KGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------KADNAV 106

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            D L++ R +Y                 + +L  L     I     H A  D  AT  L 
Sbjct: 107 VDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLA 153

Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
           W + +   ++ +  +     + + +    +   P                       +  
Sbjct: 154 WKLIKDAKEMHDINFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNIN 213

Query: 249 YKDSVIGCNLSG 260
           Y   V     S 
Sbjct: 214 YFYRVPRIPRSQ 225


>gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 453

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 106/341 (31%), Gaps = 40/341 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G  +  +   + A  R D   E  +           +   D     +TGI+
Sbjct: 2   YAILDIETTGGKLNEESITEIAIYRFDGN-EVTDRFISL---INPEKKIDDFVAHLTGIS 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++RI +     + CII  +N  FD    R  F R  +D +R +   
Sbjct: 58  NKMVRNAPK-FYEVAKRIIEIT---DGCIIVAHNAAFDYRILRLEFRRLGFDFHRNT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +  +                    +S+ L  L  + GI  +  H A  D  AT
Sbjct: 111 -------ICTVEMSQRLL----------PQESSYSLGKLTRSLGIPLLGRHRANGDAMAT 153

Query: 185 LALVWLIREKKPKL---FEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           + L  L+  K  +     E++    + +    L+ I +  P           +     ++
Sbjct: 154 VHLFKLLLTKDTQKTALTEFVKQNLHPSLNTHLLSILDTLPNQLGIYYIYDKKGKLIFLS 213

Query: 242 P-------VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
                   V  H   ++            +  +L    L   L  + +  K   P   ++
Sbjct: 214 KSKNIYKRVNEHFTSENKRDLYIQKHVGEIMYELTGTTLIATLKEAQELQKK--PFLNRK 271

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT 335
                 P ++     +K + +          ENL +   + 
Sbjct: 272 KKKKSFPFVLVAHTNEKGYIQLSIEFVNTSQENLAIFESKE 312


>gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. HGF2]
 gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. HGF2]
          Length = 1448

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 67/487 (13%), Positives = 137/487 (28%), Gaps = 57/487 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   +F G  V +    I+S ++F                +TGI
Sbjct: 397 TYCVFDLETTGLSSRFDHIIEFGGQIV-KDRACIKSLQLF---IKPPVALSAFTTELTGI 452

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         A+    I  F       I+  +N  FD  +  +   R           
Sbjct: 453 TEEHMKNA-KSFADSIDEILDFI---GDSILVAHNATFDYNFLNDELARIGRPPI----- 503

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D LD+ R++ A                 ++L  +A + GI +    AH A  D 
Sbjct: 504 -MNPVIDTLDLARSMQA-------------DRKGYRLGQIARSYGIRYDEDVAHRADYDA 549

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
                    +                  Q  +      +  +  ++      +    L+ 
Sbjct: 550 EVLAQT--YMNMLNDLKHIKNLQELQDMQTAESFRKVRVKHVTILAKNMAGLKELFELVT 607

Query: 242 -----PVAWHPRYKDSVIG--CNLSGDMRV-----FQDLDSVQLAKRLFTSHDELKGLVP 289
                 +A+  +  ++++     L  ++          + S  L   +F           
Sbjct: 608 LSHTSYLAYSSKSTNNIVAEPRILRSEIEKRRINGNLLIGSSCLNGEVFDMAQTRNEQTL 667

Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKP 348
             + + +      L P++  +           +R  E L  +++    L     A  +  
Sbjct: 668 EEVMQFY--DYIELQPLENYRHLVERDSISSMERLKEILTCIVKAADKLDKLLVASGDCH 725

Query: 349 YTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLST---LNLPFSDRRLPELFFRYRA 405
           Y    + +   +Y    A    +    I      +       +   +   L E  +    
Sbjct: 726 YVQPGEKMIRDIYISSQAIGGVRHPLYIYNQEKRRKFKAPDQHFRTTKEMLKEFAW--LG 783

Query: 406 RNFPHTLSEKEKQDWLEHR------KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINA 459
               + +  K  +   +        K  L    IE    KL  +  E    +    L   
Sbjct: 784 EQRAYDMVIKNTKRIADMIGEVKPVKDRLYPPDIEGSDQKLTDICYENAHKKYGPVLPEI 843

Query: 460 LYEYLQW 466
           + + L+ 
Sbjct: 844 VEKRLEK 850


>gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 721

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 55/186 (29%), Gaps = 27/186 (14%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + ++D ET G + +  D   Q    R+     ++   E F      +    P ++ I G
Sbjct: 530 TYTVFDTETTGLEPSNGDEIIQIGAARIVN--NRLLRQETFNQIVDPEIPLKPASIPIHG 587

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         ++       H+F       ++  +N  FD  + +    R          
Sbjct: 588 ITEDMVRGQPNIDV-VLPAFHEFCED---TVLIAHNAAFDMRFLQLKEER---------- 633

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +R         +          S KL  +    GI     H+A  D  
Sbjct: 634 ----------TNIRFTQPVLDTLLLSAVVHPNQESHKLDVILERLGITIGKRHNALEDAL 683

Query: 183 ATLALV 188
           AT  + 
Sbjct: 684 ATGEVF 689


>gi|322689603|ref|YP_004209337.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|320460939|dbj|BAJ71559.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 235

 Score = 94.1 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 30/195 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G         +   VRV      ++  +              +   +TGIT
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVRE-GHIVDQFQQL---VNPLRPIPRQITTLTGIT 89

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
                       E   R   + + P        I+G+N                F D   
Sbjct: 90  DAMVADLD-PIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLR----------FLDYNT 138

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                        D M+   A  P               +L DL +  GI     H A +
Sbjct: 139 RHIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALS 188

Query: 180 DVYATLALVWLIREK 194
           D   T      +R  
Sbjct: 189 DAIQTQQCFEWMRHY 203


>gi|309782421|ref|ZP_07677145.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
 gi|308918758|gb|EFP64431.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score = 94.1 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 56/211 (26%), Gaps = 27/211 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G + A  DR  +   V +            F+     +   D  A+ + GIT
Sbjct: 4   IILDTETTGLNAATGDRVIEIGCVEM-VNRRLTGRNLHFY--INPEREIDAGAMAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    I  +       I   +N  FD  +    F R     +R     
Sbjct: 61  NEFVADKPK-FAEIVNEIRDYVQGAEAII---HNAAFDLGFLDMEFQRLGLPPFREHLSG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                  +D +R                       L  L    GI   H   H A  D  
Sbjct: 117 ------HIDTLREARQMF-----------PGKRNSLDALCDRLGISNAHRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
               +   +   +  L   + +         
Sbjct: 160 LLAEVYLAMTRGQNTLVIDMLESGEGASAEA 190


>gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91]
          Length = 346

 Score = 94.1 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 48/188 (25%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +   V V+           +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEIGVVVVNANGT-----STWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|241663345|ref|YP_002981705.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D]
 gi|240865372|gb|ACS63033.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12D]
          Length = 242

 Score = 94.1 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 56/211 (26%), Gaps = 27/211 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G + A  DR  +   V +            F+     +   D  A+ + GIT
Sbjct: 4   IILDTETTGLNAATGDRVIEIGCVEM-VNRRLTGRNLHFY--INPEREIDAGAMAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    I  +       I   +N  FD  +    F R     +R     
Sbjct: 61  NEFVADKPK-FAEIVNEIRDYVQGAEAII---HNAAFDLGFLDMEFQRLGLPPFREHLSG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                  +D +R                       L  L    GI   H   H A  D  
Sbjct: 117 ------HIDTLREARQMF-----------PGKRNSLDALCDRLGISNAHRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
               +   +   +  L   + +         
Sbjct: 160 LLAEVYLAMTRGQNTLVIDMLESGEGASAEA 190


>gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243]
 gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243]
          Length = 381

 Score = 94.1 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 48/188 (25%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +   V V+           +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEIGVVVVNANGT-----STWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|227813558|ref|YP_002813567.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. CDC 684]
 gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. CDC 684]
          Length = 315

 Score = 94.1 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +              + +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPKRPIPDRIMSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLGLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLI 191
            A+    
Sbjct: 162 AAVYQKC 168


>gi|163857665|ref|YP_001631963.1| putative exonuclease [Bordetella petrii DSM 12804]
 gi|163261393|emb|CAP43695.1| putative exonuclease [Bordetella petrii]
          Length = 177

 Score = 94.1 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G   A     +FA V V                     +P P    +TGIT
Sbjct: 8   FAVADLETTGLSTASCEILEFAAVHVGPDGAIEREFSQVVR--TRGTVP-PFITRLTGIT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +    G+  AE       F +      + ++N  FD  + +             +   
Sbjct: 65  QAEVDGHGIPVAEAFSAFLAFLAD---APVFFHNASFDCRFLQAAAEHTGLPFANAT--- 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L + R  +                 S KLQ LA   G      H A ADV +T
Sbjct: 119 ----HCTLQLARQAW-------------PELPSHKLQVLARHVGAA-DPTHRALADVRST 160

Query: 185 LALV 188
           +A+ 
Sbjct: 161 VAVA 164


>gi|23464698|ref|NP_695301.1| exonuclease [Bifidobacterium longum NCC2705]
 gi|189438951|ref|YP_001954032.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A]
 gi|239620784|ref|ZP_04663815.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132392|ref|YP_003999731.1| polc [Bifidobacterium longum subsp. longum BBMN68]
 gi|23325262|gb|AAN23937.1| possible exonuclease [Bifidobacterium longum NCC2705]
 gi|189427386|gb|ACD97534.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A]
 gi|239516360|gb|EEQ56227.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311772644|gb|ADQ02132.1| PolC [Bifidobacterium longum subsp. longum BBMN68]
          Length = 235

 Score = 94.1 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 30/195 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G         +   VRV      ++  +              +   +TGIT
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVRE-GHIVDQFQQL---VNPLRPIPRQITTLTGIT 89

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
                       E   R   + + P        I+G+N                F D   
Sbjct: 90  DAMVADLD-PIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLR----------FLDYNT 138

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                        D M+   A  P               +L DL +  GI     H A +
Sbjct: 139 RHIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALS 188

Query: 180 DVYATLALVWLIREK 194
           D   T      +R  
Sbjct: 189 DAIQTQQCFEWMRHY 203


>gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
 gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
          Length = 681

 Score = 94.1 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 72/265 (27%), Gaps = 27/265 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     +   Q A  ++  +   I   + F       +        +TGI
Sbjct: 425 TYVVFDVETTGLSAIYNDLIQVAASKM-YKGNIIAEFDEF---INPGHHLSAFTTELTGI 480

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +  +   +F       ++  +N  FD  +    + R+          
Sbjct: 481 TDDHVKNA-KPLVQVLKEFQEF---CKDTVLVAHNATFDVGFMNANYERHGLP------K 530

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+  R +Y                    L  L    G+   + H A  D  A
Sbjct: 531 ITQPVIDTLEFARNLY-------------PEYKRHGLGPLTKRFGVALEHHHMANYDAEA 577

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+++  ++  +        R    L      +          +              
Sbjct: 578 TGRLLFIFIKEVAEKHGVTNLARLNLDLISPDSYKKARVKHATIYVKNQVGLKNIFKLVS 637

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDL 268
             + +Y + V     +      + L
Sbjct: 638 LSNTQYFEGVPRIPRTVLDAHREGL 662


>gi|227546804|ref|ZP_03976853.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|317481634|ref|ZP_07940669.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322691564|ref|YP_004221134.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227212766|gb|EEI80647.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|316916924|gb|EFV38311.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456420|dbj|BAJ67042.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 235

 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 30/195 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G         +   VRV      ++  +              +   +TGIT
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVRE-GHIVDQFQQL---VNPLRPIPRQITTLTGIT 89

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
                       E   R   + + P        I+G+N                F D   
Sbjct: 90  DAMVADLD-PIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLR----------FLDYNT 138

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                        D M+   A  P               +L DL +  GI     H A +
Sbjct: 139 RHIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALS 188

Query: 180 DVYATLALVWLIREK 194
           D   T      +R  
Sbjct: 189 DAIQTQQCFEWMRHY 203


>gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 317

 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 30/216 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +  + + D+ET G + A  DR  +   V V       +  E    +   D      A +I
Sbjct: 3   SKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLI-RVHRDI----GAQWI 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I+  + +     E   +R +    +     +   +N+ FD  +  + + R   D    
Sbjct: 58  HHISAVELIHAPEFEG-IARELRDLLA---GRVFVAHNVAFDSKFLLSEYRRLGTDIPVN 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           S         +L  M+   +    G              L D     GI++ +AH A +D
Sbjct: 114 SHT-------MLCTMKLSRSLIGVG-------------SLADCCREFGIDNEDAHSALSD 153

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
            +AT  L+  + +  P+   +        +  +   
Sbjct: 154 AHATALLLGRLMDADPEWSGWRRRLDAAEEAGEHWP 189


>gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 392

 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 50/188 (26%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G  V   R  +   V V            +           P    +TGIT
Sbjct: 15  IVFVDLETTGGSVGDHRITEVGVVEVGPNG-----VSSWTTLVDPGQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     EA  +      F+  +  +   +N  FD  + R+ F R  +         
Sbjct: 70  NDMVRGAPTFEAIAA----DLFARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A                   L  L   + +   + H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PAEKRHGLDALVERHALMPSDRHRALADADLL 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQRLH 173


>gi|229496202|ref|ZP_04389922.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
 gi|229316780|gb|EEN82693.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
          Length = 258

 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 30/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    V +D E+ G     DR  + + ++V     +    EV   +   +     E+  +
Sbjct: 5   LKRPLVFFDIESTGLSPEKDRIVEISLIKVYPDGHE----EVRTRRLNPECHIPEESTAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT            + ++ +          I GYN+ RFD       F R   +    
Sbjct: 61  HGITDDDVRDCP-TFRQVAKSLASMIQ--GCDIAGYNSNRFDVPLLGEEFLRADVE---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D  R  +           R     ++K          +   AH A+AD
Sbjct: 114 -----------VDFSRCRFIDVQTIFHKMERRTLEAAYKF-----YCDKDLTEAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM--FGASRSNTA 238
             ATL ++    ++ P+  +   ++ +   +++         + +          +    
Sbjct: 158 TRATLEVLKAQLDRYPEDLQNDVEFLSSFTMQQRNLDLAGRFVYNEKDEVVINFGKHKGV 217

Query: 239 LIAPVA-WHPRYKDSV 253
            +A V    P Y D V
Sbjct: 218 PVAEVLKKEPGYYDWV 233


>gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
 gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
          Length = 468

 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 48/190 (25%), Gaps = 28/190 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G     D   Q   VR+                        P +  + G+
Sbjct: 275 TYTVLDTETTGLLPHKDEIVQIGAVRIVNGRIVPGERMDQLV--NPGRPIPPASSKVHGV 332

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         + AE  RR H F       +I  +N  FD  +      R   +       
Sbjct: 333 TDAMVAGAPGI-AEAGRRFHTFARDS---VIVAHNAPFDMAFLHRHKTRMGVEW------ 382

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                  +LD +                     +  L  L     +       H A  D 
Sbjct: 383 ----THPILDTVLLSAVLFGASQ----------THTLDALCDRLAVTIPPNLRHTALGDA 428

Query: 182 YATLALVWLI 191
            AT  +   +
Sbjct: 429 QATAEVFGRM 438


>gi|107028837|ref|YP_625932.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116690004|ref|YP_835627.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|105898001|gb|ABF80959.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116648093|gb|ABK08734.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
          Length = 212

 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    L DR  + A + + R  + ++  +              + V +
Sbjct: 8   MQTVAVLDFETTGLSPNLGDRATEIAVILL-RNGQVVDRFQSLM---NAGRRIPSDVVAL 63

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT           +E  +    F        +  +N  FD  + ++            
Sbjct: 64  TGITNDMIATAP-PASEVMKEAAAFVGKH---AVVAHNAGFDKRFWQSELGMLG------ 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                         M A +AF+   +        A S +L  LA    +     AH A  
Sbjct: 114 --------------MSADHAFACTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMV 159

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +++   + +
Sbjct: 160 DAEMAGHLWCRLQQDISRTY 179


>gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
 gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
          Length = 547

 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 56/188 (29%), Gaps = 25/188 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G     D   +   VR+ R  E       F     D  LP      +TGI
Sbjct: 37  TFVVVDLETTGTRPGGDEITEIGAVRI-RGGEVQAELSTFVS--IDGVLPG-HISRLTGI 92

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+  +       E      +F       ++  +N RFD  + R       +        
Sbjct: 93  APEDLVGAP-SLGEVMATFLEF---SRGAVLVAHNARFDLGFLRAAAAATGHRWP----- 143

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L + R +                    +L  LA   G      H A  D  A
Sbjct: 144 -DPPSVCTLALARRV-----------LHRGETRGHRLGVLAAHLGATVEPNHRALQDARA 191

Query: 184 TLALVWLI 191
           T+ ++  +
Sbjct: 192 TVDVLHAL 199


>gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 74/253 (29%), Gaps = 29/253 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     D   + AGV++ +  E I+  E F       +      + +TGIT    
Sbjct: 1   DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56

Query: 69  LRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                        + + F   +   I+  +N  FD  +    + +             N+
Sbjct: 57  KGSDP-----IDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------KAENA 105

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D L++ R +Y                 + +L  L     I     H A  D  AT  L
Sbjct: 106 VVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYL 152

Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
            W + +   ++ +  Y     + + +    +   P         A             + 
Sbjct: 153 GWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI 212

Query: 248 RYKDSVIGCNLSG 260
            Y   V     S 
Sbjct: 213 NYFYRVPRIPRSQ 225


>gi|262047863|ref|ZP_06020812.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|312976690|ref|ZP_07788439.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
 gi|260571856|gb|EEX28428.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|310896018|gb|EFQ45083.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
          Length = 318

 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 68/206 (33%), Gaps = 24/206 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ + D ET G     DR  +  GV+V R  + ++          ++ +P      + GI
Sbjct: 32  NYTMLDIETTGLYPYRDRITELGGVKV-RNGQIVDQYTNLVKFSKNNSVP-AFITKLNGI 89

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++  ++G+   +  R   +F    +  IIGYN               NF       + 
Sbjct: 90  TEEQIGKEGIPAEQAIREFREFI--GDDVIIGYNVNFDL----------NFLYDLSQKYG 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +DV+R    +                 +L D     GI  V AH    D   
Sbjct: 138 LPVLDNDYVDVLRLARTYY----------PRERHNRLLDCMQRAGIAQVEAHHGLQDSLD 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209
           T+ +     +            + KN
Sbjct: 188 TIKVYDDFAQHFTDDLLEKAQSKIKN 213


>gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri]
 gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri]
 gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri]
 gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri]
 gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 74/253 (29%), Gaps = 29/253 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     D   + AGV++ +  E I+  E F       +      + +TGIT    
Sbjct: 1   DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56

Query: 69  LRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                        + + F   +   I+  +N  FD  +    + +             N+
Sbjct: 57  KGSDP-----IDVVLKRFKEWSADDILVAHNASFDMGFINTAYEKVGIP------KAENA 105

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D L++ R +Y                 + +L  L     I     H A  D  AT  L
Sbjct: 106 VVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYL 152

Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
            W + +   ++ +  Y     + + +    +   P         A             + 
Sbjct: 153 GWKLIKDAKEMHDIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI 212

Query: 248 RYKDSVIGCNLSG 260
            Y   V     S 
Sbjct: 213 NYFYRVPRIPRSQ 225


>gi|269963944|ref|ZP_06178254.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831319|gb|EEZ85468.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 204

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 30/197 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G    + DR  +   V++    E ++S +         +   P     T
Sbjct: 5   NSVVVLDFETTGLSPNMGDRAIEIGAVKI-VDGEVVDSFQQLM---NPGFRVSPFIEGYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT            E      +F +  N   +  +N  FD  +      R         
Sbjct: 61  GITNNMLRTAP-SCDEVMASFSEFIAGEN---LIAHNASFDKRFLDAELERIDCG----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                              F+   +        A S KL +L     IE+    H A AD
Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDGVFHRALAD 156

Query: 181 VYATLALVWLIREKKPK 197
              T  L  L+ E+  +
Sbjct: 157 AQVTAKLWLLMVEELEQ 173


>gi|172040912|ref|YP_001800626.1| putative exonuclease [Corynebacterium urealyticum DSM 7109]
 gi|171852216|emb|CAQ05192.1| putative exonuclease [Corynebacterium urealyticum DSM 7109]
          Length = 270

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 17/191 (8%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G + A DR  + A V        + S     C    +     E+  I G+   
Sbjct: 93  VVDLETTGLEPATDRVIEIA-VLTVEHGSIVGSFH---CLLNPECSIPGESSNINGLRDD 148

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    AE ++ +           +  +N++FD  +    + R  +           
Sbjct: 149 DVANSP-TFAEVAQELLPHVLNR---TLVGHNVKFDVGFLAAEYARLGHADAARVLTEQC 204

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L       A + + I      +    + L +LA   G+    AH A+ D   T  
Sbjct: 205 -----LPQALCTAATARELI----PREAVGRYTLANLAAHCGLASSPAHRAQQDAATTFD 255

Query: 187 LVWLIREKKPK 197
           L   +     +
Sbjct: 256 LTHRLYTIAQE 266


>gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans
           CH34]
          Length = 530

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 55/194 (28%), Gaps = 29/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G D   DR  +   V V      I+  +             P    +TGIT
Sbjct: 35  IVFVDLETTGADAQRDRITEIGVVEVGPDG--IQEWDTL---VDPLTSIPPFVQGLTGIT 89

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A  +  + +        +   +N RFD  + +N F R            
Sbjct: 90  DEMVRGQP-TFALIAEALAEKLQ---GRLFVAHNARFDYGFLKNEFRRAGV--------- 136

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R D+L  +R   +  P   +            L  L    G+     H A AD    
Sbjct: 137 -TFRADVLCTLRLSRSLFPSVER----------HGLDALIARFGLTPKGRHRALADAELL 185

Query: 185 LALVWLIREKKPKL 198
                 I E     
Sbjct: 186 WQFWQKIHEIYSVD 199


>gi|325102919|ref|YP_004272573.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
 gi|324971767|gb|ADY50751.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
          Length = 1454

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 66/198 (33%), Gaps = 30/198 (15%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     IE  +       D +   
Sbjct: 2   YLIFDTETTGLPKRWDAPITDVDNWPRCIQIAWQLHDEMGNLIEHQDYLIS--PDGFDIP 59

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+   A   GV   E   + ++  S   T  +   NI FD       F+R  
Sbjct: 60  YDAERIHGISTDLAREQGVPLLEILDKFNEALSK--TKFVVGQNIGFDINIMGAEFHRYG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            +          S    L V+      + + +Q P    G   FKL  L         + 
Sbjct: 118 VE----------SALSKLPVLDTCTEITANLLQLPGGRGGR--FKLPTLTELHEYLFNVP 165

Query: 171 HVNAHDAKADVYATLALV 188
              AH+A ADV AT    
Sbjct: 166 FAEAHNATADVEATTRCF 183


>gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1]
 gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens
           MI-1]
          Length = 930

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 59/202 (29%), Gaps = 31/202 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +FV  D ET G D   D   +   V++    ++I+S            +   +   +T
Sbjct: 1   MLNFVALDLETSGLDCLQDEIIEIGLVKM-VDGKEIDSFSTL---IRPKGILPVKIKRLT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI   +         E    I QF +      +  +N++FD  +                
Sbjct: 57  GIKDHELQDAPK-LQEVLPVILQFIAD---LPLVGHNVKFDYDFLSTAVQSPL------- 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                                           GA++ +L  L    GI+  N H A  D 
Sbjct: 106 ----------------ANPLYDTLELSKYLMPGASNHRLGYLCSYLGIDIPNQHRALDDA 149

Query: 182 YATLALVWLIREKKPKLFEYLY 203
                L+  +  +  ++   L 
Sbjct: 150 RGAAMLLIHLLNQCEEMEPELI 171


>gi|308273149|emb|CBX29752.1| hypothetical protein N47_F14470 [uncultured Desulfobacterium sp.]
          Length = 182

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 32/197 (16%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ +VI+D ET G +     R  +   V +      I   +              +A  +
Sbjct: 14  SDKYVIFDVETTGFNPQHGARIIEIGVVHI-ENGNIISEFKSL---INCGKAVSKQAQKV 69

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +    +   E E      +F S      +  +N  FD  + R    R  +     
Sbjct: 70  NGITNEMLSGEPTPE-EVFPDFLKFISKS---TLVAHNAVFDISFLRYELSRLGF----- 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA---NGIEHVNAHDA 177
                    D L  +       PD              KL  +A     N  ++++ H A
Sbjct: 121 -----VLSNDYLCTLNISRKIFPDLEN----------HKLLTVAKHILVNLPKNLHLHRA 165

Query: 178 KADVYATLALVWLIREK 194
             D   T  +   + ++
Sbjct: 166 LDDARLTAMIWMEMMQR 182


>gi|266619529|ref|ZP_06112464.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288868940|gb|EFD01239.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 235

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 62/207 (29%), Gaps = 28/207 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M N +V  D ET G D   D+  +   VR+    E     E F        + + +   +
Sbjct: 1   MVNSYVAVDLETTGLDPKRDKIIEIGAVRI-EAGEITAEFESF---VNPYRMLEAKTRTL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  Q  +    +E E       F        +  + I FD  + +             
Sbjct: 57  TGIRDQDVVHAPGIE-EVLPVFLNF---AGELPLLGHRIIFDYSFLKRAAVNQGE----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                 +  D L + R                       L+      GI+    H A AD
Sbjct: 108 --SFSRAGIDTLTLARLF-------------MPAEERKNLKAACGWFGIDQRETHRAMAD 152

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
             A   L   ++++  K     +  +N
Sbjct: 153 AVAAHQLYQAMKKRYGKERPDAFSEKN 179


>gi|256844192|ref|ZP_05549679.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|256614097|gb|EEU19299.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
          Length = 318

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 68/206 (33%), Gaps = 24/206 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ + D ET G     DR  +  GV+V R  + ++          ++ +P      + GI
Sbjct: 32  NYTMLDIETTGLYPYRDRITELGGVKV-RNGQIVDQYTNLVKFSKNNSVP-AFITKLNGI 89

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  + +++G+   +  R   +F    +  IIGYN               NF       + 
Sbjct: 90  TEAQIVKEGIPAEQAIREFREFI--GDDVIIGYNVNFDL----------NFLYDLSQKYG 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +DV+R    +                 +L D     GI  V AH    D   
Sbjct: 138 LPVLDNDYVDVLRLARTYY----------PRERHNRLLDCMQRAGIAQVEAHHGLQDSLD 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209
           T+ +     +            + KN
Sbjct: 188 TIKVYDDFAQHFTDDLLEKAQSKIKN 213


>gi|300773503|ref|ZP_07083372.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759674|gb|EFK56501.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 469

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 78/275 (28%), Gaps = 29/275 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G   A     + A    D   + I+S +                  +TGIT
Sbjct: 13  YAIVDIETTGGYAANSGITEIAIYLHDGH-QIIDSYQTL---INPHKEIPYHIQMLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          + +  I+ F       +   +N+ FD  +         Y         
Sbjct: 69  PEMLTDAP-SFEDVAADIYSFLENK---VFVAHNVNFDYSFVYAHLKACGYQWKS----- 119

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G +S+ L +L     I   + H A  D  AT
Sbjct: 120 -----PKLCTVRLARNIF----------KGFSSYSLGNLCQRLDIPISDRHRAAGDAKAT 164

Query: 185 LALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           + L   ++      L +       K QL      + +   +         ++N   I  V
Sbjct: 165 VILFERILSHDTNGLIDSFLQTHAKEQLLPTHIDKVVFERLPAKPGIYIFKNNKGKIIYV 224

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF 278
                 +  V+      +    + L   ++    F
Sbjct: 225 GKAINIRKRVLSHFTGNNTSNRRQLFLKEIFDIDF 259


>gi|304408937|ref|ZP_07390558.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|307302940|ref|ZP_07582695.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
 gi|304352758|gb|EFM17155.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|306913300|gb|EFN43722.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
          Length = 208

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 53/199 (26%), Gaps = 30/199 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G      DR  +   V +       +            +         T
Sbjct: 7   NTLVVLDFETTGLSPNQGDRAIEIGAVLI-EDGVITQRFSELM---NPGFRISRFIEDYT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ Q          E   R   F +  N   +  +N  FD  +    F +  +      
Sbjct: 63  GISNQMLRDA-APCNEVMARFADFIADHN---LVAHNAAFDQRFLDAEFAQIRH------ 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                         R +  F    +        A + +L  L     +      H A AD
Sbjct: 113 --------------RYLGQFGCSLLVARRLYQAAPNHQLGTLVRYKKLPTDGTFHRALAD 158

Query: 181 VYATLALVWLIREKKPKLF 199
              T  L   +     + F
Sbjct: 159 AEMTGYLWLAMLADLQQEF 177


>gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 1438

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/474 (11%), Positives = 123/474 (25%), Gaps = 45/474 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E IE  + F       +    + + +T IT
Sbjct: 421 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIERFDKF---INPHHPLSEQTINLTSIT 476

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    ++   F        +  +N++FD  +      R            
Sbjct: 477 DEMVSAAD-DEDVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLSEI------ 526

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                    L  LA    +   + H A  D  AT
Sbjct: 527 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 573

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   K +                  +   P                      
Sbjct: 574 GYLMYKLLDAFKKKYNEDNLNNLNGYAAHGEVYKRARPSHMTVLAKDQKGLKNLYKLVSI 633

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +     S   R+ + L       +       ++       ++        + 
Sbjct: 634 ASTKDFYRIPRTPKSDLARLHEGLFYGSGCWQGDVFIAMMQKGYDEAREKAKFYDFLEVQ 693

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P     +   +    D  +  + +  + +     ++        +     D   +   + 
Sbjct: 694 PPANYSQLIEDGLIKDEAQLEDIIRNIYKLGKELNKPVVATGDAHYVEPHDAIYRTILIS 753

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    +    +   + +++      F   D     +       N        E  +
Sbjct: 754 AQRSNPNRNKPQPDLHFYSTQEMLD-AFSFLGED-----IAKEIVIDNTNKI--ADEISE 805

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
                K  L    I     +++ L    + E  G    + + + +   L  +I 
Sbjct: 806 IQ-PIKDGLYPPHIAHADEEMKKLTYDKAYELYGKPLPKIVKDRIDLELNSIIS 858


>gi|17546591|ref|NP_519993.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum GMI1000]
 gi|17428890|emb|CAD15574.1| probable dna polymerase III (epsilon chain) protein [Ralstonia
           solanacearum GMI1000]
          Length = 242

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 56/202 (27%), Gaps = 27/202 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + A  DR  +   V +            F+     +   D  A+ + GIT
Sbjct: 4   IVLDTETTGLNAATGDRVIEIGCVEL-VNRRLTGRNLHFY--LNPEREIDAGAMAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    I  +       I   +N  FD  +    F R     +      
Sbjct: 61  NEFVADKPK-FAEVVDEIRDYVQGAEAII---HNAAFDLGFLDMEFKRLGLPPF------ 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                      R   A   D +    R        L  L    G+   H   H A  D  
Sbjct: 111 -----------REHLAGHIDTLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
               +   +   +  L   + +
Sbjct: 160 LLAEVYLAMTRGQNTLVIDMLE 181


>gi|254247914|ref|ZP_04941235.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|124872690|gb|EAY64406.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
          Length = 212

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    L DR  + A + + R  + ++  +              + V +
Sbjct: 8   MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGQVVDRFQSLM---NAGRRIPSDVVAL 63

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT           +E  +    F        +  +N  FD  + ++            
Sbjct: 64  TGITNDMIATAP-PASEVMKEAAAFVGKH---AVVAHNAGFDKRFWQSELGMLG------ 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                         M A +AF+   +        A S +L  LA    +     AH A  
Sbjct: 114 --------------MSADHAFACTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMV 159

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +++   + +
Sbjct: 160 DAEMAGHLWCRLQQDISRTY 179


>gi|170733343|ref|YP_001765290.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|169816585|gb|ACA91168.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 212

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    L DR  + A + + R  + ++  +              + V +
Sbjct: 8   MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGQVVDRFQSLM---NAGRRIPSDVVAL 63

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT           +E  +    F        +  +N  FD  + ++            
Sbjct: 64  TGITNDMIATAP-PASEVMKEAAAFVGKH---AVVAHNAGFDKRFWQSELGMLG------ 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                         M A +AF+   +        A S +L  LA    +     AH A  
Sbjct: 114 --------------MSADHAFACTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMV 159

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +++   + +
Sbjct: 160 DAEMAGHLWCRLQQDISRTY 179


>gi|238855548|ref|ZP_04645851.1| DNA polymerase III [Lactobacillus jensenii 269-3]
 gi|260665137|ref|ZP_05865987.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
 gi|282932326|ref|ZP_06337761.1| DNA polymerase III [Lactobacillus jensenii 208-1]
 gi|238831832|gb|EEQ24166.1| DNA polymerase III [Lactobacillus jensenii 269-3]
 gi|260561191|gb|EEX27165.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
 gi|281303547|gb|EFA95714.1| DNA polymerase III [Lactobacillus jensenii 208-1]
          Length = 316

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + + + D ET G     DR  + AG++V R  + ++        P ++ +P      + G
Sbjct: 33  DDYTMLDIETTGLSPYRDRVTELAGIKV-RNGKVVDKYSQLVKHPKNNKVPQ-FITKLNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  +  L  G+   E       F       I+GYN               NF       +
Sbjct: 91  IDEKLILTQGIPVKEAITDFRNFIGED--VIVGYNVNFDL----------NFIYDLCEKF 138

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +      + +DV+     F              +  +L D     GI    AH    D  
Sbjct: 139 NLERLSNNYIDVLHFSRVFF----------KKESHNRLLDCIQRLGISESEAHRGLKDSL 188

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            T A+  + +++             KN +  
Sbjct: 189 DTKAVFDIYQKQFTSEMLSEVKNNLKNCILT 219


>gi|309790215|ref|ZP_07684787.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
 gi|308227800|gb|EFO81456.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
          Length = 935

 Score = 93.7 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 59/192 (30%), Gaps = 33/192 (17%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    FV  D ET G    +D   +FA V+  R  E +E         A       +   
Sbjct: 1   MKERIFVALDVETTGLQAGIDEIIEFAAVKF-RDGEILERFSQL---IAPRQPLPLKITR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT Q          +   +I  F        +  ++I FD    R          Y 
Sbjct: 57  LTGITAQDLADAPH-FNDVGGKIAGFIKS---YPLVGHSINFDLGMLRAQGMNFTQPVYD 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                    +DL  ++    A                 +KL  +A   GI H + H A  
Sbjct: 113 T--------FDLATILMPQIAV----------------YKLGAIADRLGIPHPDDHRALN 148

Query: 180 DVYATLALVWLI 191
           D   T  +   +
Sbjct: 149 DAEVTAHVFTHL 160


>gi|86133336|ref|ZP_01051918.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85820199|gb|EAQ41346.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 359

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 79/249 (31%), Gaps = 28/249 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D Q E ++           +       V +TGI 
Sbjct: 2   YAILDIETTGGKFNEEGITEIAIYKYDGQ-EIVDQFISL---INPEKPIQEFVVRLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++RI +       CII  +N  FD    R  F R  +D  R +   
Sbjct: 58  NKMLKNAPK-FYEVAKRIVEITKN---CIIVAHNSAFDYRILRTEFDRLGFDFERNT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +    A   D            S+ L  L  + GI   + H A  D  AT
Sbjct: 111 -------LCTVELSQALILD----------QPSYSLGKLTKSLGIPISDRHRATGDALAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           + L  L+ EK  K        +  ++  +   ++N+   +               +  + 
Sbjct: 154 VKLFKLLLEKDHKKTIIQNAIKYFDKRLEKQKLKNLIEEIPAVLGVYYIHDANGKVIYIG 213

Query: 245 WHPRYKDSV 253
                K  +
Sbjct: 214 KGKNIKAEI 222


>gi|167747300|ref|ZP_02419427.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662]
 gi|167653278|gb|EDR97407.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662]
          Length = 234

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 64/212 (30%), Gaps = 32/212 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V +D ET G  V  D+  +   V+V +  +         C    +       + +T
Sbjct: 1   MREYVAFDLETTGLSVEEDQVIEIGAVKV-KNGKIAGKYN---CIIYPEREVSDFIIRLT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +     G+   E    +  F +      +  +N+ FD  + +    R  Y      
Sbjct: 57  GITRKML-DGGIPMRE---GVEGFLAFSEGYPVLGHNLMFDYRFMKTAAKRFRY------ 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   + +D +RA                   S KL  L       +  AH A  D 
Sbjct: 107 ----AFEKEGVDTLRAARLLLRGLE----------SKKLSSLCEHYHYVNQAAHRAYDDA 152

Query: 182 YATLALV----WLIREKKPKLFEYLYDYRNKN 209
            AT  +         E +         YR K 
Sbjct: 153 LATAVVFESMKREFGEDQKVFVPEPLQYRPKK 184


>gi|302880064|ref|YP_003848628.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
 gi|302582853|gb|ADL56864.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
          Length = 204

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 55/192 (28%), Gaps = 30/192 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    L DR  + A V V    +     +             P    +
Sbjct: 1   METVAVIDFETTGMSPELGDRATEVAVVIV-SDGKISSRYQSLM---NTGAYIPPFIEDL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ +   +     A+  + +  F           +N  FD  +    + R  +     
Sbjct: 57  TGISNEMIRQAP-PAAQVMKELADFV---GAAPWVAHNASFDSRFLDAEWSRMGH----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                          R   AF+   +        + + KL  L    G  +    H A A
Sbjct: 108 ---------------RREQAFACSMLLARRLYPDSPNHKLGTLVRFLGLPDTARHHRALA 152

Query: 180 DVYATLALVWLI 191
           D   T  L   +
Sbjct: 153 DAEMTAHLWLRM 164


>gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 247

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 53/186 (28%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   + +            F      + L   +A+ + GIT
Sbjct: 5   IVLDTETTGFDPRTGDRLIEVGCIEI-LDLLPTGR--TFHRFVNPERLIPADAIRVHGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             K          F++ +           +  +N +FD  +  +   R  +     +   
Sbjct: 62  DDKVKDAPK----FAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPLLHET--- 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + +  +    +               L  L     I  V+   H A  D  
Sbjct: 115 --RWIDTLQLAQKRFPGMAN--------------SLDALCKRYKISLVDRTLHGALIDAR 158

Query: 183 ATLALV 188
               + 
Sbjct: 159 LLAEVY 164


>gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
 gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
          Length = 1254

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 60/208 (28%), Gaps = 26/208 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G   A DR  +FA     R     +                     +TGI
Sbjct: 176 TIIVFDLETTGFRAAGDRIIEFAA----RDLAGGDR-STISALVNPGRTVPYLITAVTGI 230

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           T Q   +  V    E    I QF            ++ +N  RFD  +    F       
Sbjct: 231 TNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCGIQV 290

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176
             W         D + + R          +         S KL  L  A G      AH 
Sbjct: 291 PEW-----WLFLDSMPLARETKKKFGYNWR---------SLKLSVLHEAYGLHSTERAHR 336

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204
           A ADV    +++  I  +         +
Sbjct: 337 AMADVNMLASVLEAIVSELQLPASEFLE 364


>gi|300771841|ref|ZP_07081712.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761227|gb|EFK58052.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 1474

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 68/198 (34%), Gaps = 30/198 (15%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     +     F   P    +P 
Sbjct: 2   YIIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDDMGNMV-EHADFLIAPDGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            ++  I GI+ + A   G+   E   R ++  +      +   NI FD       FYR  
Sbjct: 61  -DSEKIHGISTELAQERGIPIQEALVRFNEALAKAK--FVVGQNIGFDLNIMGCEFYRYG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL----ALANGIE 170
            +          S    + V+      + + ++ P    G   +KL +L        G+ 
Sbjct: 118 VE----------SPMAGMPVLDTCTEVTAELLKLPGGRGGR--YKLPNLTELHTYLFGVP 165

Query: 171 HVNAHDAKADVYATLALV 188
              AH+A ADV AT    
Sbjct: 166 FAEAHNATADVEATTRCF 183


>gi|170697844|ref|ZP_02888929.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170137231|gb|EDT05474.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 205

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 39/225 (17%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    L DR  + A + + R  E ++  +              + V +
Sbjct: 1   MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGEIVDRYQSLM---NAGRRIPSDVVAL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +         ++  +    F        +  +N  FD  + +             
Sbjct: 57  TGITNEMIASAP-PVSQVMKEAAAFV---GNHPLVAHNAGFDKRFWQAELGMLG------ 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                         M A +AF+   +        A S +L  LA    +     AH A  
Sbjct: 107 --------------MAAEHAFACTMLVARRIYPHARSHRLSSLADMLRLPQTGRAHRAMV 152

Query: 180 DVYATLALVWLIREKKPKLFE---------YLYDYRNKNQLRKLI 215
           D      L   ++      +                +K ++    
Sbjct: 153 DAEIASHLWCRLQRDIGATYGLRHIDHGLMSRLQTTSKAKVATFF 197


>gi|148656137|ref|YP_001276342.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
 gi|148568247|gb|ABQ90392.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
          Length = 233

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 14/200 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G +   D       V +D    +++       +P DD   +PEA+ + G+ 
Sbjct: 38  YSVIDVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGLL 97

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ   +      +    + +  +     ++  +    D  + R    R +          
Sbjct: 98  PQDVEQAPPP-GDVLPVLLRRLT---GRVLVVHVADIDIGFLRQALRRLYQVD------- 146

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   +D  R  + F  +  +     D   + +L+ LA + G+     H+A  D   T
Sbjct: 147 --PRGPAIDTARLAWHFQRN-QRLIDGADQEPALQLRALAESAGLPVYAEHNALNDALTT 203

Query: 185 LALVWLIREKKPKLFEYLYD 204
             +                 
Sbjct: 204 AQVFLAQINAMQPNGTPRLR 223


>gi|313156971|gb|EFR56403.1| exonuclease [Alistipes sp. HGB5]
          Length = 255

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 27/197 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    + +D ET G D A DR  + +  ++    E+I    V   K   +     EA  I
Sbjct: 5   LKRPIIFFDLETTGVDTAKDRIVEISMAKIMPDGEEI----VKTRKLNPEMHIPEEATAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         A+ ++ + QF         G+N+ RFD       F R   D    
Sbjct: 61  HGITDEDVKDCP-TFAQVAKSLEQFIR--GCDFGGFNSNRFDLPVLVEEFLRAGVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D  R  +    +      +     ++K          +  +AH A+AD
Sbjct: 114 -----------VDFKRRKFIDVQNIFHKKEQRTLVAAYKF-----YCDKDLDDAHSAEAD 157

Query: 181 VYATLALVWLIREKKPK 197
             AT  ++    E+ P 
Sbjct: 158 TLATYEVLKAQLERYPD 174


>gi|227877650|ref|ZP_03995697.1| DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850746|ref|ZP_05556169.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|227862746|gb|EEJ70218.1| DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256712459|gb|EEU27457.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 318

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 24/206 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ + D ET G     DR  +  GV+V R  + ++          ++ +P      + GI
Sbjct: 32  NYTMLDIETTGLYPYRDRITELGGVKV-RNGQIVDQYTNLVKFSKNNSVP-AFITKLNGI 89

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  + +++G+   +  R   +F    +  IIGYN               NF       + 
Sbjct: 90  TEAQIVKEGIPAEQAIREFREFI--GDDVIIGYNVNFDL----------NFLYDLSQKYG 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +DV+R    +                 +L D     GI  V AH    D   
Sbjct: 138 LPVLDNDYVDVLRLARTYY----------PRERHNRLLDCMQRAGIAQVEAHHGLQDSLD 187

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209
           T+ +     ++           + KN
Sbjct: 188 TIKVYDDFAQRFTDDLLEKAQSKIKN 213


>gi|58040389|ref|YP_192353.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
 gi|58002803|gb|AAW61697.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
          Length = 228

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 29/225 (12%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    + +D ET G D  + DR  + A + +       E+  V       +     EA  
Sbjct: 1   MKRSIL-FDTETTGFDPDMGDRIIEIAALELIDDLPTGEAYHVL---IHPERDIPAEATK 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + G   +       + +E +    +F        +  +N RFD  +          +   
Sbjct: 57  VHGFRIEDLEGKP-IFSEVADGFLEFI---GDSPMIAHNARFDFKFVNAELKACGREPLD 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
           ++        D +++ R  Y   P                L  L    GI+      H+A
Sbjct: 113 YASR----AIDTVEMARKKYPGLPA--------------SLDALCRRFGIDLSQRGTHNA 154

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
             D      +   +   + +        R+++    +  + N  P
Sbjct: 155 LLDCKLLAEVYVELMGGRQRGLGLAGPSRSRSMTEGINALANRKP 199


>gi|116513938|ref|YP_812844.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093253|gb|ABJ58406.1| 3'-5' exonuclease with to CRISPR-associated protein from COG1343
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 290

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 64/187 (34%), Gaps = 30/187 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D ET G +   D+      V+ D           F+     D     + V +T
Sbjct: 123 QKRFVAVDIETTGLNTESDQILSIGAVKHDG--------IEFYRLIKQDIDVPKQIVELT 174

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +   ++GV   +    +  F        I   N RFD  +    + +      +  
Sbjct: 175 GITSEMLSKEGVPLQDALEELTDFV---GNVPIVGYNFRFDSVFLNRDYRKCGMQELKNE 231

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   DLL V++    F  +             +KLQ +    GIE+   H+A +D 
Sbjct: 232 IK------DLLPVVKRREKFLDN-------------YKLQTVLSNYGIENKVPHNAVSDA 272

Query: 182 YATLALV 188
            AT  L 
Sbjct: 273 RATKELA 279


>gi|307717344|gb|ADN88725.1| DNA polymerase III [Listeria innocua]
 gi|307717350|gb|ADN88728.1| DNA polymerase III [Listeria innocua]
 gi|307717352|gb|ADN88729.1| DNA polymerase III [Listeria innocua]
 gi|307717386|gb|ADN88746.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 76/259 (29%), Gaps = 29/259 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     D   + AGV++ +  E I+  E F       +      + +TGIT    
Sbjct: 1   DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56

Query: 69  LRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                        + + F       I+  +N  FD  +    + +   +         N+
Sbjct: 57  KGSDP-----IDVVLKQFREWSGDDILVAHNASFDMGFINTAYEKVGLE------KANNA 105

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D L++ R +Y                 + +L  L     I     H A  D  AT  L
Sbjct: 106 VVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYL 152

Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
            W + +   ++ +  +     + + +    +   P                       + 
Sbjct: 153 AWKLIKDAKEMHDIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI 212

Query: 248 RYKDSVIGCNLSGDMRVFQ 266
            Y   V     S   ++ +
Sbjct: 213 NYFYRVPRIPRSQLKKMRE 231


>gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
 gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
          Length = 1473

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 28/199 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G +   +R  + A V V                P    +P P  V +TGIT 
Sbjct: 296 VVFDLETTGLNKDRNRIIEIAAVNVSD---PTHQPMSTLVNPGRFAVPPP-VVALTGITN 351

Query: 66  QKALRDGVVEAE-FSRRIHQFFSV-------PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                  V   +  +    ++           +  +  +N  +FD  + +  + R   + 
Sbjct: 352 AMVSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEYRRLGREL 411

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AH 175
                       D L + R                    S+KL+ LA   G++     AH
Sbjct: 412 PE-----DWRFVDTLPLARKT---------LAKEAVPGGSYKLESLAAHFGVDTAGASAH 457

Query: 176 DAKADVYATLALVWLIREK 194
            A+AD      ++  +   
Sbjct: 458 RAEADARMLGDVLQRLVGC 476


>gi|73537451|ref|YP_297818.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
 gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 530

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 54/188 (28%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G D   DR  +   V V  +   I+  +             P    +TGIT
Sbjct: 32  IVFVDLETTGADAQHDRITEIGVVEVGPEG--IQEWDTL---LDPGVSIPPFIQRLTGIT 86

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A  +  + +        +   +N RFD  + +N F R            
Sbjct: 87  DETVQGQP-TFASIAEALAERLQ---GRLFVAHNARFDYGFLKNEFRRAGL--------- 133

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R D+L  +R   +              A    L  +     ++    H A AD    
Sbjct: 134 -TFRADVLCTVRLSRSLF----------PSAARHGLDAIIARFDLQPRARHRALADAELL 182

Query: 185 LALVWLIR 192
                 I 
Sbjct: 183 WQFWQKIH 190


>gi|297568933|ref|YP_003690277.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924848|gb|ADH85658.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 238

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 14/200 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D E  G +   D       V++      +     F            ++  I  IT
Sbjct: 40  FVVFDTELTGLNRQRDEIVSIGAVKIRNLQILVGE--TFHVYIKPSRALPKDSTLIHRIT 97

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ+  +      + +  +  F S     ++  + +  D  +      R++         +
Sbjct: 98  PQQIEQAP----QLATVLPDFISFCGQALLVGHYVGLDVAFLNRACRRHYGAVVSNPCLD 153

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                     M+              R     ++ L  L+    +     HDA  D   T
Sbjct: 154 TMRLAQTYTEMQWQQYH--------DRFRMDATYSLAGLSQEYNLPDFTLHDAYEDALQT 205

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L   + +K          
Sbjct: 206 AYLFVFLIKKMRAKGIVTLK 225


>gi|307717390|gb|ADN88748.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 75/252 (29%), Gaps = 27/252 (10%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     D   + AGV++ +  E I+  E F       +      + +TGIT    
Sbjct: 1   DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
                ++      + +F       I+  +N  FD  +    + +   +         N+ 
Sbjct: 57  KGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE------KADNAV 106

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            D L++ R +Y                 + +L  L     I     H A  D  AT  L 
Sbjct: 107 VDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLA 153

Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
           W + +   ++ +  +     + + +    +   P                       +  
Sbjct: 154 WKLIKDAKEMHDINFHDSLNDYMGEGEAYKRARPFHATIYAQTDVGLKNLFKLITMSNIN 213

Query: 249 YKDSVIGCNLSG 260
           Y   V     S 
Sbjct: 214 YFYRVPRIPRSQ 225


>gi|298528189|ref|ZP_07015593.1| DNA polymerase III, epsilon subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511841|gb|EFI35743.1| DNA polymerase III, epsilon subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 249

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 64/200 (32%), Gaps = 15/200 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D E  G +V  D       +R+      +E +  F   P  D     +++ I GIT
Sbjct: 52  FVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACPTRDV--PKQSIVIHGIT 109

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P +A +      E  + +  F       II  +NI  D         + F          
Sbjct: 110 PSEAQKAP-PLKEALQGLLDF---CGNSIIVGHNINLDISVINRELKKEF---------G 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G      +D MR    +               S+ L+ L+   G+     H+A  D   T
Sbjct: 157 GELHNPCIDTMRLARQYREGQWTGAYECYEEYSYNLRKLSREFGLPLFTEHNAFTDALQT 216

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L   +  K      +   
Sbjct: 217 AYLFIYLVHKMQVNAAWTLK 236


>gi|227536604|ref|ZP_03966653.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243681|gb|EEI93696.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 469

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 79/275 (28%), Gaps = 29/275 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G   A     + A    D   + I+S +                  +TGIT
Sbjct: 13  YAIVDIETTGGYAANSGITEIAIYLHDGH-QVIDSYQTL---INPHKEIPYHIQMLTGIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          + +  I+ F       +   +N+ FD  +         Y         
Sbjct: 69  PEMLTDAP-SFEDVAADIYSFLENK---VFVAHNVNFDYSFIYAHLKACGYQWKS----- 119

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G +S+ L +L     I   + H A  D  AT
Sbjct: 120 -----PKLCTVRLARNIF----------KGFSSYSLGNLCQRLDIPISDRHRAAGDAKAT 164

Query: 185 LALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           + L   ++ +    L +       K QL      + +   +         ++N   I  V
Sbjct: 165 VILFERILSQDTDGLIDSFLQTHAKEQLLPTHIDKMVFERLPAKPGIYIFKNNKGKIIYV 224

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF 278
                 +  V+      +    + L   ++    F
Sbjct: 225 GKAINIRKRVLSHFTGNNTSNRRQLFLKEIFDIDF 259


>gi|187478996|ref|YP_787020.1| exonuclease [Bordetella avium 197N]
 gi|115423582|emb|CAJ50118.1| putative exonuclease [Bordetella avium 197N]
          Length = 193

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 58/176 (32%), Gaps = 27/176 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G         +FA VRVD + +          +     +P      +TGI+
Sbjct: 28  FVVADLETTGLSAHACEILEFAAVRVDTEGQIASEYSQL-VRIN-GRVPS-FIARLTGIS 84

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q+ +RDG    E  R    F     T  + ++N  FD  + R    R            
Sbjct: 85  QQEVIRDGKPIDEAFRAFCDFV---GTAPVFFHNASFDTRFLRATASRCG-------QAF 134

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            N     L + R  +                 S KL  LA   G      H A AD
Sbjct: 135 DNDTHCTLLLARRAW-------------PELRSHKLGMLAEHLGAAT-PTHRALAD 176


>gi|317471044|ref|ZP_07930419.1| exonuclease [Anaerostipes sp. 3_2_56FAA]
 gi|316901485|gb|EFV23424.1| exonuclease [Anaerostipes sp. 3_2_56FAA]
          Length = 234

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 64/212 (30%), Gaps = 32/212 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V +D ET G  V  D+  +   V+V +  +         C    +       + +T
Sbjct: 1   MREYVAFDLETTGLSVEEDQVIEIGAVKV-KNGKIAGKYN---CIIYPEREVSDFIIRLT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +     G+   E    +  F +      +  +N+ FD  + +    R  Y      
Sbjct: 57  GITRKML-DGGIPMRE---GVEGFLAFSEGYPVLGHNLMFDYRFMKTAAKRFRY------ 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   + +D +RA                   S KL  L       +  AH A  D 
Sbjct: 107 ----AFEKEGVDTLRAARLLLRGLE----------SKKLSSLCEHYHYVNQAAHRAYDDA 152

Query: 182 YATLALV----WLIREKKPKLFEYLYDYRNKN 209
            AT  +         E +         YR K 
Sbjct: 153 LATAVVFESMKREFGEDQKVFVPEPLQYRPKK 184


>gi|221195007|ref|ZP_03568063.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium
           rimae ATCC 49626]
 gi|221184910|gb|EEE17301.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium
           rimae ATCC 49626]
          Length = 251

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 26/189 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              +  D ET G D   D   Q + +  D   + I   E   C P     P+  A  I G
Sbjct: 21  EKILCIDTETTGLDPRKDEIIQLSMI--DGHGKSI--FESLICPPTRKRWPN--AQEING 74

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITP+       +E E + ++ +  +  +  I+GYN            F  +  + Y    
Sbjct: 75  ITPKMVKGKPELE-EVADQVQEAINAAD-LIVGYNLPFDISMMEAEGFDFSDKEQY---- 128

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                     D+M           +W S  D     KL   A   GI+   AHDA  D  
Sbjct: 129 ----------DLMEDYAQVFG---RWSSAKDDYLWTKLTTAAKHYGIKFA-AHDAGEDAR 174

Query: 183 ATLALVWLI 191
           AT+ L + +
Sbjct: 175 ATIKLFYAM 183


>gi|109898679|ref|YP_661934.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700960|gb|ABG40880.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
          Length = 235

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 25/205 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  +   V       +  +   F        L + EA+ + GIT
Sbjct: 4   IVLDTETTGIDPRQGHRIIEIGCV---ELLNRRLTGNTFHVYVNPQRLIEQEAIEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  L   +  A+ +    +F S      +  +N  FD  +  + F R           +
Sbjct: 61  NEYLLDKPL-FADVAADFVKFIS---GAQLVIHNAPFDVGFMDHEFARVAA-MAGKKTSD 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L++ R I+    +               L  L    GI+  H   H A  D  
Sbjct: 116 MCTVLDTLEMARQIHPGQKN--------------NLDALCKRYGIDNSHRELHGALLDSE 161

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207
               +  ++   +  L        +
Sbjct: 162 ILADVYLMMTGGQTDLNLSGKSNSD 186


>gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 53/191 (27%), Gaps = 29/191 (15%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV++D ET G      D   Q A VR+           VF             +  + G
Sbjct: 509 TFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGE--VFDTLVNPGRPIPAASTAVHG 566

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         + AE  RR H+F       ++  +N  FD  + R               
Sbjct: 567 ITEAMVATAPAI-AEVGRRFHKF---AEGAVLVAHNAPFDLEFLRRKELLIG-------- 614

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180
              N    +LD +                   A    L  L    G  I     H A  D
Sbjct: 615 --KNFDNPVLDTVLLSAVVF----------GAAEGHSLDALTHRLGITIPEEARHTALGD 662

Query: 181 VYATLALVWLI 191
             AT      +
Sbjct: 663 TVATAEAFLRL 673


>gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein
 gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003]
 gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 53/191 (27%), Gaps = 29/191 (15%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV++D ET G      D   Q A VR+           VF             +  + G
Sbjct: 509 TFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGE--VFDTLVNPGRPIPAASTAVHG 566

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT         + AE  RR H+F       ++  +N  FD  + R               
Sbjct: 567 ITEAMVATAPAI-AEVGRRFHKF---AEGAVLVAHNAPFDLEFLRRKELLIG-------- 614

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180
              N    +LD +                   A    L  L    G  I     H A  D
Sbjct: 615 --KNFDNPVLDTVLLSAVVF----------GAAEGHSLDALTHRLGITIPEEARHTALGD 662

Query: 181 VYATLALVWLI 191
             AT      +
Sbjct: 663 TVATAEAFLRL 673


>gi|189460117|ref|ZP_03008902.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136]
 gi|189433159|gb|EDV02144.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136]
          Length = 258

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 30/257 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +      +  I
Sbjct: 5   LKNPLVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ESKTMRVNPEMHIPEASTAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E ++ I +        I G+N+ RFD       F R   D    
Sbjct: 61  HGIHDEDVADCP-TFKEIAKDIARDLE--GADIAGFNSNRFDVPVLVEEFLRAGID---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ +  +           +   + ++K        G    +AH A+AD
Sbjct: 114 -----------IDLTKRKFIDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV--HVSGMFGASRSNTA 238
             AT  ++    +  P + E    + ++              +   +   +F   +    
Sbjct: 158 TRATYEVLKAQLDHYPDVLENDIKFLSEYSTYSKNVDFAGRIVFDDNGVEVFNFGKYKGI 217

Query: 239 LIAPVAW-HPRYKDSVI 254
            +A V    P Y   ++
Sbjct: 218 SVAEVLQRDPGYYGWIL 234


>gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
          Length = 1450

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+YD ET G +    +  +   V++  +   ++                   V +T I
Sbjct: 423 SFVVYDLETLGFNSHEGKIIEIGAVKIVEK-RIVDRFSQL---VNPGQSIPQNIVDVTNI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T      +  +E E   +   F       I+  +N  FD  Y +    +  Y  +     
Sbjct: 479 TDSMVQNEPNIE-EVLPKFLDFIE---GSILVAHNADFDIGYLKQQCKQQGYSDF----- 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              S  D L + + +Y                  F L  L    G+   N H A  D  A
Sbjct: 530 -NPSFIDTLQMAKDLY-------------PELKQFGLGPLNKKLGLSLENHHRAVDDCQA 575

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  +  +  +K      +   
Sbjct: 576 TGNMFLIFLDKYLDQGIHKLS 596


>gi|163787271|ref|ZP_02181718.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium
           ALC-1]
 gi|159877159|gb|EDP71216.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium
           ALC-1]
          Length = 1128

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     I   + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCI-EHQDYLVKPEGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A   GV  +E   + +   S   T  +   N++FD       F R  
Sbjct: 61  -DAEKIHGISTELAQEQGVSLSEVLEKFNTALSK--TKFVVGQNVKFDLNIMGAEFVR-- 115

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
                   ++  +    L V+      +    Q P        FKL  L           
Sbjct: 116 --------EDVANPLQELPVLDTCTEHTASLCQIP--GGRYGKFKLPTLTELHQFLFNTP 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKP 196
              AH+A ADV AT    + +  K+ 
Sbjct: 166 FGEAHNATADVEATTRCFFELIRKQQ 191


>gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
 gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
          Length = 1208

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 60/208 (28%), Gaps = 26/208 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G   A DR  +FA     R     +                     +TGI
Sbjct: 176 TIIVFDLETTGFRAAGDRIIEFAA----RDLAGGDR-STISALVNPGRTVPYLITAVTGI 230

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           T Q   +  V    E    I QF            ++ +N  RFD  +    F       
Sbjct: 231 TNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCGIQV 290

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176
             W         D + + R          +         S KL  L  A G      AH 
Sbjct: 291 PEW-----WLFLDSMPLAREAKKKFGYNWR---------SLKLSVLHEAYGLHSTERAHR 336

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204
           A ADV    +++  I  +         +
Sbjct: 337 AMADVNMLASVLEAIVSELQLPASVFLE 364


>gi|227529135|ref|ZP_03959184.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350979|gb|EEJ41270.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           vaginalis ATCC 49540]
          Length = 960

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 61/185 (32%), Gaps = 28/185 (15%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G  V   DR  Q   V V +  E I   E    K             +TGI
Sbjct: 25  YSVVDLETTGTSVNHGDRIIQVGCVLV-QDGEIINHFET---KINPRVAVPRHITQLTGI 80

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                    + E + +  ++   S     I   +N+ FD  +      R  Y        
Sbjct: 81  KNNDVRNAPLFE-DIAGTLYSLLS---GTIFVAHNVNFDFPFLNAELERAGYP------S 130

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + + +                    S++L+DL  +  IEH + H A +D  A
Sbjct: 131 LSIKAIDTVTLSQI-------------LMPTVKSYRLRDLTSSLSIEHDHPHSAVSDAEA 177

Query: 184 TLALV 188
           T  L+
Sbjct: 178 TAHLL 182


>gi|46198769|ref|YP_004436.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB27]
 gi|55980782|ref|YP_144079.1| DNA polymerase III subunit epsilon-like protein [Thermus
           thermophilus HB8]
 gi|46196392|gb|AAS80809.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB27]
 gi|55772195|dbj|BAD70636.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB8]
          Length = 624

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 52/184 (28%), Gaps = 31/184 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  +D ET G D   D     AGV V     ++   EVF           P A  + G+T
Sbjct: 440 YTAFDLETTGLDPEQDAVVALAGVHVL--GRRVLRQEVFEALVNPGRPISPAATAVHGLT 497

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       +EA        F       ++  +N  FD  + R    R   D        
Sbjct: 498 AEMLRDKPPLEA-VLPAFRAFVQD---TVLVAHNGAFDLAFLR----RAGLDQP------ 543

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                +           ++L+ LA   G+     H A  D   T
Sbjct: 544 ---------------PLLDTLLLAQLLFPDLKDYRLEALAHRFGVPATGRHTALGDALMT 588

Query: 185 LALV 188
             + 
Sbjct: 589 AEVF 592


>gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 1450

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+YD ET G +    +  +   V++  +   ++                   V +T I
Sbjct: 423 SFVVYDLETLGFNSHEGKIIEIGAVKIVEK-RIVDRFSQL---VNPGQSIPQNIVDVTNI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T      +  +E E   +   F       I+  +N  FD  Y +    +  Y  +     
Sbjct: 479 TDSMVQNEPNIE-EVLPKFLDFIE---GSILVAHNADFDIGYLKQQCKQQGYSDF----- 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              S  D L + + +Y                  F L  L    G+   N H A  D  A
Sbjct: 530 -NPSFIDTLQMAKDLY-------------PELKQFGLGPLNKKLGLSLENHHRAVDDCQA 575

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  +  +  +K      +   
Sbjct: 576 TGNMFLIFLDKYLDQGIHKLS 596


>gi|323496243|ref|ZP_08101301.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326]
 gi|323318520|gb|EGA71473.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326]
          Length = 204

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 58/194 (29%), Gaps = 30/194 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D+ET G    + DR  +   V++    E +++ +         +         TGIT
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKL-VNGEVVDTFQQLM---NPGFRVSAFIEGYTGIT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q          E       F    N   +  +N  FD  +  +   R            
Sbjct: 64  NQMLSGAP-SCDEVMTEFADFIRGEN---LVAHNASFDKRFLDDELERV----------- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183
                     +     F+   +        A S KL D+     IE+    H A AD   
Sbjct: 109 ---------KVAYRGEFACSLLISRRLHQDAPSHKLGDIVRYKHIENDGVFHRALADAQV 159

Query: 184 TLALVWLIREKKPK 197
           T  L  ++     +
Sbjct: 160 TAKLWMVMVNDLQQ 173


>gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
 gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 876

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 85/209 (40%), Gaps = 26/209 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             + +++D E+ G DV  D   Q A ++++++ E ++  E F            ++ ++ 
Sbjct: 507 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKSVK----DSYYVH 562

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G + +   R G  + +  +   ++    ++ I+G+N     +     +   N       +
Sbjct: 563 GFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKT 620

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      +D LD+ R  Y              G  ++KL++L+     +H  +HDA  D+
Sbjct: 621 F------YDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 661

Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209
            AT  L+   I EK  +         +K+
Sbjct: 662 IATGELLVRAINEKIRETSMERMALMSKH 690


>gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD]
          Length = 1457

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 57/476 (11%), Positives = 135/476 (28%), Gaps = 44/476 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     +   +F  V V +  + +E  E                  +TGIT
Sbjct: 404 YVVFDLETTGLSPKFNELIEFGAV-VWQNGQTLEKHEFL---IKPKEKIPSYISDLTGIT 459

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q    + +   E + +I Q F      I+  +N RFD       F              
Sbjct: 460 NQMIENEAISVEEAAIKIKQIFQNS---ILVAHNARFDYGCLVEFFKELELYELE----- 511

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R +                  + K      +   +   +H    D    
Sbjct: 512 -QPVIDTLEVSRFLAP-----------TQKRHNLKELAKNASIHYDETESHRGGYDAEVL 559

Query: 185 LALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             +      K  +      +  N+  + +         +  + V             +  
Sbjct: 560 AKVWDQFLIKLIEKNIKDLNSLNQVGSNILDFKRRGLFSKEIRVIVKNQQGLKELFKLVS 619

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL-----FTSHDELKGLVPVPIKEVHL 297
           ++    +    +               +  L  +L     +  H++L+  +         
Sbjct: 620 LSNTDNFLSKPLLFYDKILPSNNLLWGTSGLDSQLMEILFYNHHNDLETFIKKFDFIEIP 679

Query: 298 NKCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT----NLRDRFKAIYNKPYT 350
                   +      K++  +   +  +   ++  L+   +      ++         Y 
Sbjct: 680 TPSSFIHLIKRNKIKKEDIIKGLKLVIELARKHKKLIVASSEPRYINKEDKIFHLVYIYA 739

Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
                    L+ G     +  I         ++L        D+ L +       RN P+
Sbjct: 740 KGVGGKPHNLFGGDTDKKEDHIFPTKYFMTTQELKAEFAFLEDQDLID---EIVVRN-PN 795

Query: 411 TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
            +   +  + ++  K  L   + ++  +K++ L  +   ++  E L + +   ++ 
Sbjct: 796 KI--ADLVEQVQVIKDKLYPPKFDDSASKIKHLVYQKAHEKYGENLPDQIALRIEK 849


>gi|330444392|ref|YP_004377378.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
 gi|328807502|gb|AEB41675.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
          Length = 232

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 53/187 (28%), Gaps = 28/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +  + YD ET G  +  DR  + A           ES   +      +     ++  I 
Sbjct: 1   MSVLIFYDTETTGTQIDKDRVIEIAAY----NSSTKESFVTY---VNPEIPVPEDSSKIH 53

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT            E      QF    +  ++ +NN  FD    +    R   +     
Sbjct: 54  GITTAMVSSAP-TFPEAYHNFKQFCGSAS-ILVAHNNDNFDLPLLQKECQRYSLEPLN-- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     +D ++    + PD               LQ L    G     AH A  DV
Sbjct: 110 -------LRTIDSLKWAKKYRPDL----------PKHNLQYLRQVYGFAENQAHRALDDV 152

Query: 182 YATLALV 188
                + 
Sbjct: 153 ITLHKVF 159


>gi|307717346|gb|ADN88726.1| DNA polymerase III [Listeria innocua]
 gi|307717356|gb|ADN88731.1| DNA polymerase III [Listeria innocua]
 gi|307717358|gb|ADN88732.1| DNA polymerase III [Listeria innocua]
 gi|307717360|gb|ADN88733.1| DNA polymerase III [Listeria innocua]
 gi|307717374|gb|ADN88740.1| DNA polymerase III [Listeria innocua]
 gi|307717388|gb|ADN88747.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 76/259 (29%), Gaps = 29/259 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     D   + AGV++ +  E I+  E F       +      + +TGIT    
Sbjct: 1   DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56

Query: 69  LRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                        + + F       I+  +N  FD  +    + +   +         N+
Sbjct: 57  KGSDP-----IDVVLKQFREWSGDDILVAHNASFDMGFINTAYEKVGLE------KAKNA 105

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D L++ R +Y                 + +L  L     I     H A  D  AT  L
Sbjct: 106 VVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYL 152

Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
            W + +   ++ +  +     + + +    +   P                       + 
Sbjct: 153 AWKLIKDAKEMHDIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI 212

Query: 248 RYKDSVIGCNLSGDMRVFQ 266
            Y   V     S   ++ +
Sbjct: 213 NYFYRVPRIPRSQLKKMRE 231


>gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM
           6578]
          Length = 198

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 52/183 (28%), Gaps = 27/183 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G D       + A V+   Q  +  +      KP        E   I GI  
Sbjct: 22  VAFDLETTGLDPVRHSVVEIACVKF--QGGEPRAFFSLLVKPPH--PIPAEVTKIHGIGD 77

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q               +  F     T ++  +N  FD  + R  + R            G
Sbjct: 78  QDVEEAP-PLPSVLPMLESFV---GTHLLVAHNAPFDLSFLRIEYARCGRPYP------G 127

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D   + R++                   + L  L  A  I     H A +D +A  
Sbjct: 128 FRAIDTRLLARSV-------------LPHLGRYSLASLTRALDIPLQQHHRALSDAWACG 174

Query: 186 ALV 188
            L 
Sbjct: 175 DLF 177


>gi|104773929|ref|YP_618909.1| hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423010|emb|CAI97696.1| Hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 290

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 30/184 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G +   D+      V+ D           F+     D     + V +TGIT
Sbjct: 126 FVAVDIETTGLNTETDQILSIGAVKHDG--------TEFYRLIKQDIDVPKQIVELTGIT 177

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   ++GV   +    +  F    N  I+GYN       +  +  + N         + 
Sbjct: 178 SEMLSKEGVPLQDALEELTDFV--GNVPIVGYN-------FRFDSAFLNRDYRKCGMQEL 228

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   DLL V++    F  +             +KLQ +    GIE+   H+A +D  AT
Sbjct: 229 KNEIKDLLPVVKRKEKFLDN-------------YKLQTVLSNYGIENKVPHNAVSDARAT 275

Query: 185 LALV 188
             L 
Sbjct: 276 KELA 279


>gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 375

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 49/189 (25%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V V            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGSSAEHRITEIGVVEVGPLG-----VSTWTTLVNPGQSIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A  +  +   F   +  +   +N  FD  + R  F R  Y         
Sbjct: 70  DAMVRDAP-SFASLAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGYAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A                   L  L   +G+     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PREARHGLDALIERHGLVPSARHRALADADLL 165

Query: 185 LALVWLIRE 193
                 + E
Sbjct: 166 WQFWRQLHE 174


>gi|254443946|ref|ZP_05057422.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
 gi|198258254|gb|EDY82562.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
          Length = 205

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 55/202 (27%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  V+ D+ET G   +L DR  +   VR+    E     +                   T
Sbjct: 5   DTVVVLDFETTGLSPSLGDRAIEIGAVRI-EGGEVTGRFQELM---NPGCRISGFIEDYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT          E     R  +F    N   +  +N  FD  +      R         
Sbjct: 61  GITNGMLRDAEPCEV-VMERFAEFIGGHN---LVAHNASFDQRFLDAELARI-------- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180
             +     D +  M A      D          A + +L  L   AN       H A  D
Sbjct: 109 --SQRRVGDFVCSMLAARRLFQD----------APNHQLGTLVRYANFSVDGVFHRALYD 156

Query: 181 VYATLALVWLIREKKPKLFEYL 202
              T  L   + +     +   
Sbjct: 157 SEMTTKLWIRMLDTIGDRYGLF 178


>gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
          Length = 758

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 100/329 (30%), Gaps = 27/329 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 458

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R+  +F+       +  +N++FD  +      R   D        
Sbjct: 459 DEMVQNAD-DENIVIRQFQEFYQD---LPLCGHNVQFDIGFLNAALRRCNMDII------ 508

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 509 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 555

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 556 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 615

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L       +       ++       ++  +     + 
Sbjct: 616 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 675

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQ 333
           P    +    ++   D K   E +T + +
Sbjct: 676 PPAAYQHLLDDKLIKDKKELQEIITNIYK 704


>gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 375

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 49/189 (25%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGSSAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQSIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A  +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DEMVRDAP-SFASLAPTL---FERLDGKLFVAHNASFDRGFLRAEFDRAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A                   L  L   +G+     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PREARHGLDALIERHGLVPAARHRALADADLL 165

Query: 185 LALVWLIRE 193
                 + E
Sbjct: 166 WQFWRQLHE 174


>gi|312978245|ref|ZP_07789989.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
 gi|310894963|gb|EFQ44033.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
          Length = 836

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/444 (11%), Positives = 118/444 (26%), Gaps = 41/444 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E +E  + F       +    + + +T IT
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        EA   ++   F        +  +N++FD  +      R            
Sbjct: 475 DEMVGAAD-DEAVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLKEI------ 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                +   L  LA    +   + H A  D  AT
Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQSRHTLDSLAKKYNVSLEHHHRANQDAEAT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   K +                  +   P          +           
Sbjct: 572 GYLMFKLLDAFNKKYHENNLNNLNGYAAHGEVYKRARPSHMTVLAKDQAGLKNLYKLVSI 631

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +    +     S   R+   L       +       ++       ++        + 
Sbjct: 632 ASTKDFFRIPRTPKSDLARLHDGLLYGSGCWQGDVFIAMMQKGYDEAREKAKFYDYLEVQ 691

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LY 361
           P     +   +    D  +  E +  + +     ++     +  +    +D   +   + 
Sbjct: 692 PPATYSQLIADGLIKDEDQLHEIIENIIKLGKELNKPVVATSDAHYVDQKDAIYRKILIA 751

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHTLSEKEKQD 419
                    +    +   + +++      F   D        +    N        E  +
Sbjct: 752 AQRSNPSRNKPQPDLHFYSTQEMLD-AFSFLGEDV-----AKKIVIDNTNKI--ADELSE 803

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSL 443
                K  L    IE    +++ L
Sbjct: 804 IQ-PIKDGLYPPHIEHADEEMKKL 826


>gi|227540116|ref|ZP_03970165.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239977|gb|EEI89992.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 1474

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 68/198 (34%), Gaps = 30/198 (15%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     +     F   P    +P 
Sbjct: 2   YIIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDDMGNMV-EHADFLIAPDGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            ++  I GI+ + A   G+   E   R ++  +      +   NI FD       FYR  
Sbjct: 61  -DSEKIHGISTELAQERGIPIQEALVRFNEALAKAK--FVVGQNIGFDLNIMGCEFYRYG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL----ALANGIE 170
            +          S    + V+      + + ++ P    G   FKL +L        G+ 
Sbjct: 118 VE----------SPMAEMPVLDTCTEVTAELLKLPGGRGGR--FKLPNLTELHTYLFGVP 165

Query: 171 HVNAHDAKADVYATLALV 188
              AH+A ADV AT    
Sbjct: 166 FAEAHNATADVEATTRCF 183


>gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
 gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
          Length = 470

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 48/186 (25%), Gaps = 28/186 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G     D   Q   VRV +                        +  +  I 
Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRVIKGRIVEGEQLDMLV--DPGIPIPAASTRVHKIN 335

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               L       + ++    F       +I  +N  FD  +      R   +        
Sbjct: 336 DAMVLGAP----DIAKAGLIFHQFSRDAVIVAHNAPFDMAFLHRHAKRMGVEW------- 384

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                 +LD +                   + +  L  +    G  I     H A  D  
Sbjct: 385 ---THPVLDTVLLSAVLF----------GASETHTLDAVCARLGVTIPATLRHTALGDAV 431

Query: 183 ATLALV 188
           AT  ++
Sbjct: 432 ATAEVL 437


>gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 375

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 48/189 (25%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGSTAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQSIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A  +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DDMVRDAP-SFASLAPTL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A                   L  L   +G+     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PREARHGLDALIERHGLVPAARHRALADADLL 165

Query: 185 LALVWLIRE 193
                 + E
Sbjct: 166 WQFWRQLHE 174


>gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101]
 gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101]
          Length = 870

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 105/300 (35%), Gaps = 30/300 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             + +++D E+ G DV  D   Q A +++++  E ++  E F            ++ ++ 
Sbjct: 501 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFLKNKKSVK----DSYYVH 556

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G + +   R G  + +  +   +F       II  +N+++D     +   RN     ++ 
Sbjct: 557 GFSDEMLQRIGEEKEKVLK---EFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK 613

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                + +D LD+ R  Y              G  ++KL++L+     +H  +HDA  D+
Sbjct: 614 -----TFYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDAMDDI 655

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT  L+     +K K             L+    I      +              L+A
Sbjct: 656 IATGELLVRAINEKIKETSMERMALMSKHLKAFTAISKKLNELFQIAERKRP---YELVA 712

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
            V      K    G      +   +DL    L + L       +  +   I+   L+   
Sbjct: 713 CVINGFNIKSMYAGDENKEKLNRLRDL--YALFRDLDDKSKGNRDALLDIIRITGLSNGE 770


>gi|310642523|ref|YP_003947281.1| dnaq family exonuclease/ding family helicase [Paenibacillus
           polymyxa SC2]
 gi|309247473|gb|ADO57040.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           polymyxa SC2]
          Length = 960

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 62/188 (32%), Gaps = 27/188 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D+ET G   A D   Q     +D     I    V+           P    +TGI
Sbjct: 2   KFAVLDFETTGTQSA-DDIIQVGLAIIDHD-NSISR--VYGSYVNPGRSIPPFITGLTGI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E E    +          ++  +N+ FD  + ++   R  Y  +     
Sbjct: 58  TDDDVKDAPALE-EMMMELVPMLDD---VVLVGHNVAFDFNFLQSALDRCGYLPF----- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +D ++ ++                +S++L  ++   G+ H   H A +D  A
Sbjct: 109 -SGRILDTMDFLKIMF-------------PSLSSYQLGFVSSEFGLAHDRPHQADSDALA 154

Query: 184 TLALVWLI 191
           T  +    
Sbjct: 155 TAEVFLKC 162


>gi|261879422|ref|ZP_06005849.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           bergensis DSM 17361]
 gi|270333990|gb|EFA44776.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           bergensis DSM 17361]
          Length = 287

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 24/200 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   +I+D ET G D+A DR  Q + ++VD Q  + E   +F      +    P    +
Sbjct: 5   LTKPLIIFDLETTGLDLATDRIIQISYIKVDPQGNE-ERKSLF---VNPEKPIPPFVQEL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT            + ++ + + F+       G+N+ RFD       F R   D    
Sbjct: 61  THITDDMVKDAP-TFKQIAKSLQETFA--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDF- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                                      +   +    +   +        +   AH A  D
Sbjct: 117 ----------------QRCRLIDAQNIFHKMEPRNLAAAYRFYTGNKMEDDFQAHRADED 160

Query: 181 VYATLALVWLIREKKPKLFE 200
             AT  ++    +K      
Sbjct: 161 TEATYRVLQGQLDKYNPENP 180


>gi|297621916|ref|YP_003710053.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044]
 gi|297377217|gb|ADI39047.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044]
          Length = 249

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 27/233 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D ET G D   DR  + A V    + EK+++ E        +      ++ I 
Sbjct: 6   KQQFVCLDCETTGLDPKEDRVIEVACVAFTLE-EKLDAFETL---IDPERDIPETSIAIH 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            IT +       V  E   ++  F     + II  + I+FD     +   R         
Sbjct: 62  HITQKMVAGKPKV-KEVLPKVLDFV---GSHIIVGHGIQFDIEAISHSCDRAGISKNLRD 117

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     +D +R    +             +    L+ L     IE   AH A +DV
Sbjct: 118 N-------PFIDTLRMARLY-----------GESPINSLEHLRKHFNIESEIAHRAMSDV 159

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKL-IDIQNMTPLVHVSGMFGAS 233
              + +   + +    L +          L+++ +      P   +   +   
Sbjct: 160 MVNIEVFKQLLKGYSSLKQLNKILAKPIMLKEMPLGKHKGRPFKEIPVQYLRW 212


>gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 453

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G  +  +   + A  R D Q +  +           +   D   V +TGI+
Sbjct: 2   YAIIDIETTGGKMGEEAITEIAIYRFDGQ-KVTDRFISL---INPEKKIDDFVVRLTGIS 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   +      E ++RI +       CI+  +N  FD       F R  +D        
Sbjct: 58  NKTVRQAPK-FYEVAKRIVEITED---CILVAHNASFDYRVLSLEFRRLGFD-------- 105

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                          +                S+ L  L  + GI  +N H A  D  AT
Sbjct: 106 ------------YQRSTLCTVEMSQRLLPDEPSYSLGKLTRSLGIPLLNRHRANGDAMAT 153

Query: 185 LALVWLIREKKPK 197
           + L  L+ ++  +
Sbjct: 154 VHLFKLLLDRDTQ 166


>gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
 gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
          Length = 707

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 54/189 (28%), Gaps = 27/189 (14%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FVI+D ET G   +  D     AGVR+      +   E F             ++   G
Sbjct: 513 SFVIFDTETTGLAPSEGDEIISIAGVRM-VNGRIL-EGECFEQLVNPGRPIPKASIKFHG 570

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  +            +  + QF +     ++  +N  FD  + R    +          
Sbjct: 571 IRDEMVADKPG----IATVLPQFSAFVGDSVLVAHNAAFDMKFIRLKEGQCG-------- 618

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       ++         +      D      L+ +A   G+E    H A  D  
Sbjct: 619 ------------LKFENPVLDTLLLSVFLHDHTPEHTLEAIANRLGVEISGRHTALGDTL 666

Query: 183 ATLALVWLI 191
            T  +   +
Sbjct: 667 VTGEIFAQM 675


>gi|332291494|ref|YP_004430103.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169580|gb|AEE18835.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 1463

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 99/339 (29%), Gaps = 33/339 (9%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D     I   + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPKNWNAPLTDSDNWPRAIQIAWQLHDEMGNVI-EHQDYLIKPDGFDIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+   A RDG+  +E   + +   S      +   N+ FD       F+R  
Sbjct: 61  -DAERIHGISTALAERDGIELSEVLSKFNIALSKSK--YVVGQNVGFDTNIMGAEFHRL- 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
                    N  +    L V+      +    Q P    G   FKL  L        G  
Sbjct: 117 ---------NIGNDLQELPVLDTCTEKTATLCQLPGGRGGK--FKLPTLTELHKHLFGEG 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
              AH+A ADV AT        E   +      +        +     N  P+  +    
Sbjct: 166 FGEAHNATADVEAT---TRCFLELIRQRVYTKEELDVAPDYFERFSQSNPQPITFIGLKH 222

Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290
              +  +A IA           +    +  +     D+    L      S  +    V  
Sbjct: 223 INLKKASAKIAQALAAQDDTPEISKAEIEENKEQLSDVKFAHLHNHSQFSILQSTASVQD 282

Query: 291 PIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLT 329
            +K   L+K P +   D         +    K       
Sbjct: 283 IVKAAALHKMPAVAMTDMGNMMGAFHFTKAVKSHNAFAK 321


>gi|171056929|ref|YP_001789278.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170774374|gb|ACB32513.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 731

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 50/185 (27%), Gaps = 27/185 (14%)

Query: 5   FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + ++D ET G +    D   Q    R+     K+   E F           P  + I GI
Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRI--SGGKLRRQESFEQLVDPQRPIPPAGIPIHGI 598

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P        ++       H F       ++  +N  FD  + +    R           
Sbjct: 599 KPDMVAGQPTIDH-VLPAFHAF---AQDTVLVAHNAAFDMRFLQLKQDRTG--------- 645

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +          +          S +L+ +A    I  V  H A  D   
Sbjct: 646 -----------LVFDQPVLDTLLLSAVVHPNQESHRLEAIAERFSITVVGRHTALGDAMV 694

Query: 184 TLALV 188
           T  + 
Sbjct: 695 TAEVF 699


>gi|332306364|ref|YP_004434215.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173693|gb|AEE22947.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 235

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 68/206 (33%), Gaps = 27/206 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G D     R  +   V  V+R+     +   F        L + EA+ + GI
Sbjct: 4   IVLDTETTGIDPRQGHRIIEIGCVELVNRRL----TGNTFHVYINPQRLIEQEAIEVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L   V  A+ +    QF    N   +  +N  FD  +  + F R           
Sbjct: 60  TNEYLLDKPV-FADIAADFAQFI---NGAQLVIHNAPFDVGFMDHEFDRVA-SMVGKKTA 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
           +  +  D L++ R I+    +               L  L    GI+  H   H A  D 
Sbjct: 115 DMCTVLDTLEMARQIHPGQKN--------------NLDALCKRYGIDNSHRELHGALLDS 160

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN 207
                +  ++   +  L        +
Sbjct: 161 EILADVYLMMTGGQTALNLSGKSNSD 186


>gi|261406087|ref|YP_003242328.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
 gi|261282550|gb|ACX64521.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
          Length = 958

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 27/188 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D+ET G + + D   Q     ++        + V+           P    +TGI
Sbjct: 2   KFAVLDFETTG-NQSADEIIQVGLAIIEEDRSI---SRVYGTYVNPGIPIPPFITGLTGI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +            E    +          ++  +N+ FD  + +N   R  Y        
Sbjct: 58  SDSDVADAP-SLEEMMMELVPMLDD---VVLVGHNVAFDFNFLQNALDRCGYLP------ 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  +LD M  +    P             S++L  ++   G+EH   H A +D  A
Sbjct: 108 ---FSGRILDTMHFLKICFPSL----------PSYQLGMVSSHFGLEHDRPHQADSDALA 154

Query: 184 TLALVWLI 191
           T   +   
Sbjct: 155 TAYALLKC 162


>gi|37677155|ref|NP_937551.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|320159243|ref|YP_004191621.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O]
 gi|37201700|dbj|BAC97521.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|319934555|gb|ADV89418.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O]
          Length = 204

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 60/213 (28%), Gaps = 35/213 (16%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G    L DR  +   V++    E +E+ +         +         T
Sbjct: 5   NSVVVLDFETTGLSPNLGDRAIEIGAVKL-VNGEVVETFQQLM---NPGFRVSSFIESYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT            E      +F +  N   +  +N  FD  +      R   D     
Sbjct: 61  GITNNMLRSAP-SCDEVMASFSEFIAGEN---LIAHNASFDKRFLDAELERINCD----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180
                              F+   +        A S KL +L    N       H A AD
Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDGVFHRALAD 156

Query: 181 VYATLALVWLIREKKPKL-----FEYLYDYRNK 208
              T  L  L+ E+                 +K
Sbjct: 157 AQMTAKLWLLMVEELEHSGIANPSFQFMQTVSK 189


>gi|86134050|ref|ZP_01052632.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85820913|gb|EAQ42060.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 275

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 91/300 (30%), Gaps = 33/300 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   V +D ET G ++A DR  + + ++V     K    E        +      A  +
Sbjct: 5   LTKPIVFFDLETTGVNIATDRIVEISILKVFPNGNK----ESKTWLVNPEIEIPQGATDV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +K + +     E + ++ +  +     + G+N+ RFD         R   D    
Sbjct: 61  HGITNEKVVTEP-TFKELAGKVSEMIA--GCDLAGFNSNRFDIPLLAEELMRAGIDFD-- 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+  +       +                         G E   AH A+AD
Sbjct: 116 --MQNRKAIDVQVIFHKKEQRTLSAG----------------YQFYCGKELEGAHGAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239
             AT  ++    EK   +   +      +   K  D             +F   +     
Sbjct: 158 TNATYEILLAQVEKYDDIGNSVDALSEFSTHGKRADFAGFILFNDENQEIFSFGKYKGRT 217

Query: 240 I-APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
           +   +  +P Y + +   +     +        Q+ +R+    D +     +   +   N
Sbjct: 218 VEEVLTENPGYNNWIQNADFPLYTKKVL----KQIKERMSAPKDTMSDEDKLKALQQKFN 273


>gi|317051112|ref|YP_004112228.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
 gi|316946196|gb|ADU65672.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
          Length = 169

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 52/197 (26%), Gaps = 32/197 (16%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            N FV  D ET G   A   R  + A V++  Q + I                      +
Sbjct: 1   MNTFVAIDVETTGLSPARGARVIEIAAVKM-EQGQVIAEFCSL---IQVGVPVSAATTGV 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT            E   +   F        I  +N  FD  +  +   R        
Sbjct: 57  HGITTAMLAGQPAP-GEIWPQFIWFIEHH---PIVAHNAPFDMRFVHSELQRLGLSMA-- 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN---GIEHVNAHDA 177
                N     L + R  Y                 + KL+ LA          +  H A
Sbjct: 111 -----NPSHCTLRLGRRKY-------------PRLPNHKLEYLAQHVLGKLPPEIQLHRA 152

Query: 178 KADVYATLALVWLIREK 194
             D   T  +   +R +
Sbjct: 153 LGDARLTAMVWEEMRRE 169


>gi|187929152|ref|YP_001899639.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J]
 gi|187726042|gb|ACD27207.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12J]
          Length = 242

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 57/211 (27%), Gaps = 27/211 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G + A  DR  +   V +            F+     +   D  A+ + GIT
Sbjct: 4   IILDTETTGLNAATGDRVIEIGCVEM-VNRRLTGRNLHFY--INPEREIDAGAMAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    I  +       I   +N  FD  +    F R    ++R     
Sbjct: 61  NEFVADKPK-FAEIVNEIRDYVQGAEAII---HNAAFDLGFLDMEFQRLGLPAFREHLSG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                  +D +R                       L  L    G+   H   H A  D  
Sbjct: 117 ------HIDTLREARQMF-----------PGKRNSLDALCDRLGVSNAHRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
               +   +   +  L   + +         
Sbjct: 160 LLAEVYLAMTRGQNTLVIDMLESGEGASAEA 190


>gi|330816132|ref|YP_004359837.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
 gi|327368525|gb|AEA59881.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
          Length = 203

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 57/200 (28%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G   A  DR  + A V + R  E ++  +              + V +
Sbjct: 1   MQTVAVLDFETTGLSPAQGDRATEIAIVLL-RDGEIVDRYQSLM---NAGRRIPSDVVAL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT              +  + +  +      +  +N  FD  + ++            
Sbjct: 57  TGITNDMIASAPP----VASVMREAAAFVGNHPVVAHNAGFDRRFWQSELGLLGVP---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                           + + F+   +        A S +L  L       +   AH A  
Sbjct: 109 ----------------SAHEFACTLLVARRIYPQAPSHRLSSLVEMLSLPKTGRAHRAMV 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   ++    + +
Sbjct: 153 DAEMASHLWCRLQSDMARTY 172


>gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 473

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 48/186 (25%), Gaps = 28/186 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G  V  D   Q A  RV             +          P +  I G+ 
Sbjct: 270 FVVFDTETTGLSVETDAIVQIAAQRVMNGRLVKGEVFDAYV--NPGRAIPPASTRIHGVR 327

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    +E +     H F       ++  +N  FD    R                 
Sbjct: 328 DADVADAPSIE-QVIPAFHHF---SKDAVLVAHNAPFDIGLLRQQERATGIKW------- 376

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKADVY 182
                 +LD +           +            L  L     IE    + H A  D  
Sbjct: 377 ---DHPVLDTVLLSAVVFGISQE----------HSLDALCQRLAIEIPAQHRHTALGDAK 423

Query: 183 ATLALV 188
           AT   +
Sbjct: 424 ATAEAL 429


>gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
 gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
          Length = 627

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  +D ET G D   D       V +     ++   EV+             +  + G+T
Sbjct: 443 YTAFDLETTGLDPREDAIIALGAVHLL--GSRVLRHEVYEALVDPGRPIPKASTEVHGLT 500

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       +E E       F       ++  +N  FD  + R                 
Sbjct: 501 WEMLKDKPKLE-EVLPAFRAFLE---GSVLVAHNGAFDMAFLR---------------KV 541

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G  +  L+D +   +   PD              +L+ LA   G+  +  H A  D   T
Sbjct: 542 GIDQPPLVDTLLLAHLLFPDL----------KDHRLERLAERFGVPVLGRHTALGDALMT 591

Query: 185 LALVWLI 191
             +   +
Sbjct: 592 AEVYARM 598


>gi|227544617|ref|ZP_03974666.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300910253|ref|ZP_07127713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|227185400|gb|EEI65471.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri CF48-3A]
 gi|300892901|gb|EFK86261.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
          Length = 954

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 28/201 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G +V   DR  Q   V V +  E +   E    K           V +TGI
Sbjct: 19  YSVVDLETTGTNVNHGDRIIQIGCVLV-QDGEIMNHFET---KINPREKIPRSIVQLTGI 74

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +   +  + E + +  I+   +         +N+ FD  +      R  Y S      
Sbjct: 75  EDKDVRKAPLFE-DIAGTIYSLLAE---TTFVAHNVNFDFPFLNAELERAGYPSLS---- 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +D +                   A SF+L+DL  +  IEH + H A +D  A
Sbjct: 127 -----IPAIDTVTLSQILL----------PTAKSFRLRDLTSSLHIEHDHPHSAVSDAEA 171

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+  + ++  +L     +
Sbjct: 172 TADLLNDLLKRVQELPTLTLE 192


>gi|167624226|ref|YP_001674520.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis
           HAW-EB4]
 gi|167354248|gb|ABZ76861.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 213

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 58/200 (29%), Gaps = 30/200 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  ++ D+ET G      DR  +   V + +  + I+  +         +         T
Sbjct: 14  DTVIVLDFETTGLSPNQGDRAIEIGAVML-KDGKVIDRFQQLM---NPGFRVSGFIENYT 69

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +        E     +   F    N   +  +N  FD  +      R         
Sbjct: 70  GISNEMLSDAKSCET-VMTQFADFIGDYN---LVAHNASFDQRFLDAELSRV-------- 117

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
             N N        M        D          A + KL  L     I+H    H A AD
Sbjct: 118 --NCNYPGQFACSMLIARRLYQD----------APNHKLGSLIHYKNIQHDGVFHRALAD 165

Query: 181 VYATLALVWLIREKKPKLFE 200
              T  L  ++ E     ++
Sbjct: 166 SEMTADLWLVMLEDLNADYQ 185


>gi|332703188|ref|ZP_08423276.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553337|gb|EGJ50381.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 246

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 17/201 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D E  G D   D       VR+     +      ++       LP      I  IT
Sbjct: 49  FTVLDTELTGMDHRRDEIVSIGAVRIRGMAIQPG--ANWYAVVRPSCLPKA-CTLIHRIT 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P +         E S  + +F       +I  +++  D  +      R            
Sbjct: 106 PSEVEAAP----ELSDVLPEFADYLGQSLIVGHHVGMDAAFLNRACKRIL---------G 152

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-ATSFKLQDLALANGIEHVNAHDAKADVYA 183
           G      LD MR    +  +             S+ L DLA   G+    AH+A +D   
Sbjct: 153 GPMANPCLDTMRLAQVYEEERWVSYYDRYNLRVSYNLTDLAAQYGLPSFPAHNALSDAMQ 212

Query: 184 TLALVWLIREKKPKLFEYLYD 204
              L   +  K    + +   
Sbjct: 213 AAYLFLFLVRKLRSGYVHTLK 233


>gi|254718114|ref|ZP_05179925.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
 gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
          Length = 234

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G +   DR  +  GV +  ++    +   F           P+A+ + GI+ 
Sbjct: 4   IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++ L   V  AE      +F    +   +  +N  FD  +      R             
Sbjct: 62  EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEIASEH--- 114

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 115 --IVDTLALARRKHPMGPN--------------SLDALCKRYGIDNSHRTLHGALLDAQI 158

Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207
              +   +   K        +  +
Sbjct: 159 LAEVYIELIGGKQTALGLTMESGS 182


>gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
 gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
          Length = 1476

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 61/201 (30%), Gaps = 22/201 (10%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D     I   + +  +P    +P 
Sbjct: 2   YLIFDTETTGLPRNWNAPLSDSDNWPRCIQIAWQLHDEMGNVI-EHQDYLVQPEGFNIPF 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A   G+   +   +  +      T  +   N+ FD       F R  
Sbjct: 61  -DAEKIHGISTELAAAKGISLEDMMAKFQEVLGK--TKFLVGQNVGFDLNIMGAEFLRLG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +       N      LLD      A                +                A
Sbjct: 118 LE-------NPLPDMPLLDTCTEATAQLCQIAGGRYGKFKLPTLTELH-QFLFNSPFGEA 169

Query: 175 HDAKADVYATLALVWLIREKK 195
           H+A ADV AT    + +  ++
Sbjct: 170 HNATADVEATTRCFFELIRRQ 190


>gi|194290095|ref|YP_002006002.1| DNA polymerase III subunit epsilon [Cupriavidus taiwanensis LMG
           19424]
 gi|193223930|emb|CAQ69939.1| DNA polymerase III epsilon subunit [Cupriavidus taiwanensis LMG
           19424]
          Length = 246

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 60/208 (28%), Gaps = 27/208 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + A  DR  +   V +            F+  P  D   D  A+ + GIT
Sbjct: 7   IVLDTETTGLNAATGDRLIEIGCVEL-MNRRLTGRHLHFYVNPERD--IDEGAIAVHGIT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    I +F       I   +N +FD  +    F       +R    N
Sbjct: 64  VEFLADKPR-FAEVVHDIREFVQDAELII---HNAQFDLGFLDMEFQLLGLPPFRQHVGN 119

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                 ++D +R                       L  L    GI   H   H A  D  
Sbjct: 120 ------VIDTLREARQMF-----------PGKRNSLDALCERLGISNAHRKLHGALLDAE 162

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210
               +   +   +  L     D  +   
Sbjct: 163 LLAEVYLAMTRGQDSLVIDTLDGGSGQD 190


>gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC
           19977]
 gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium
           abscessus]
          Length = 327

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 69/242 (28%), Gaps = 30/242 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  +V+ D ET G      R    A + +D      +S             P P    + 
Sbjct: 11  SPKWVVVDLETSGFQPGRARVISVAALAMDADGTITDSVVSL---LNPGVDPGP--THVH 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+TP+         ++ +  +           +  +N+ FD  +          +     
Sbjct: 66  GLTPEMLEGQPE-FSDIAPDLIALLR---GRTLVAHNVGFDYSFLAAEAELVGAELPTE- 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                             A           +    + +L+ LA   G+E + AHDA  D 
Sbjct: 121 ------------------AVMCTVELTRRLELDTPNLRLETLAAHWGVEQLKAHDAYDDA 162

Query: 182 YATLALVWLIREKKPK--LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
                ++  + E+  +   +  + +   K      +    + PL  ++        N   
Sbjct: 163 RVLAEVLPKVLERARERGTWLPIRETTRKRWPNGRVTHDELRPLKTLASRQPCHWLNPGP 222

Query: 240 IA 241
             
Sbjct: 223 YT 224


>gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 309

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 29/190 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++ D ET G     D   Q + ++V    + I++ + +              V+ITGIT
Sbjct: 45  YIVLDIETTGLSSVSDDIIQLSALKVKED-KVIDTFDSY---VKPSTSIPENVVYITGIT 100

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    +  E   +   F       ++G+N IRFD  +  N  +         +W  
Sbjct: 101 NSTVENAPEIF-EIMPKFVSFTE--GMPLVGHNIIRFDIPFIVNNGFYYEDIEALDTWR- 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                 +     +   + KL  L    GI   ++H+A  D   T
Sbjct: 157 --------------------LAKNKDFPEPLKNLKLPTLKEYFGIS-GSSHNALDDCKTT 195

Query: 185 LALVWLIREK 194
           + +   +R+ 
Sbjct: 196 ITVYRHLRDN 205


>gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
 gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
          Length = 453

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 72/234 (30%), Gaps = 31/234 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D   E ++           +    P  V +TGI 
Sbjct: 2   YAIIDIETTGGQFNEEGITEIAIYKFDGH-EVVDQFISL---VNPEKPIQPFVVKLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E ++RI +       C+I  +N  FD    +  F R  YD  + +   
Sbjct: 58  NAMLRSAPK-FYEVAKRIIEITE---GCVIVAHNASFDYRILKTEFRRLGYDFKKQT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                           S+ L  L  A GI   + H A  D  AT
Sbjct: 111 -----------------LCTVELSKKLIPEQPSYSLGKLVRALGIPMADRHRANGDALAT 153

Query: 185 LALVWLIREKK--PKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRS 235
           + L  ++  K    ++ +       K+ +  KL+DI    P           + 
Sbjct: 154 VKLFKMLLVKDIEKEIVKSFIKTEIKSGISPKLLDIVESLPSKTGIYYIHNEKG 207


>gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 869

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 25/191 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D E+ G +   D   Q A VR+       E     + +P+       ++  I G+
Sbjct: 499 SLIVFDVESTGTNPLQDEIIQIAAVRLRTDGTIQEKFMT-YLRPSRTV---GDSYAIHGL 554

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +   ++G    +  R +  F +     +I  +N+ +D    ++   R           
Sbjct: 555 SDEFLQKNGT---DARRALQNFLTFAKDSLIVGHNVLYDISILQSELSRLSLPCPT---- 607

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D LD+ R  Y                  + L+ L+      H  +H+A  D+ A
Sbjct: 608 -EMPYMDTLDIYRRFY-------------PDLEKYTLEFLSHHFSTAHKPSHNAWDDILA 653

Query: 184 TLALVWLIREK 194
           T  L+  + ++
Sbjct: 654 TADLLQTVLQE 664


>gi|157692739|ref|YP_001487201.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pumilus SAFR-032]
 gi|157681497|gb|ABV62641.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
          Length = 930

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 61/203 (30%), Gaps = 28/203 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             FV+ D ET G      D+  Q A V +    + +E    +                +T
Sbjct: 4   QRFVVVDIETTGNSPKKGDKIIQIAAVVI-ENGQIVERYSKY---VNPGKPIPGFIEQLT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI         V   + ++ ++             +N+ FD  +  +             
Sbjct: 60  GIQQHMVDDA-VFFEDIAQEVYDLIQ---GAYFVAHNVHFDLNFLNDELKACG------K 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
            +      D +++ R +Y                  +KL +L+    + H + H A +D 
Sbjct: 110 NELDVLAIDTVEISRILY-------------PELEGYKLTELSEELMLPHDHPHRADSDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L   +  +     + +  
Sbjct: 157 EVTAMLFLTLLHQLTHTPQNVLK 179


>gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
 gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
          Length = 471

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 53/202 (26%), Gaps = 29/202 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G     D   Q   VRV  +      T                +  +  I
Sbjct: 278 SFVVFDTETTGLMPNKDEIVQIGAVRVVNRRIIPGETVDQLV--NPGRPIPAASTGVHRI 335

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +               F       +I  +N  FD  + +   + + +        
Sbjct: 336 TDDMVVNAPDP----VTATSDFHVFAKDAVIVAHNAPFDMAFLQRYGHMSGHVW------ 385

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                  +LD +           +            L  L     IE   A  H A  D 
Sbjct: 386 ----DHPILDTVLLSAVVFGAEQE----------HTLDALCARLDIEIPEALRHTALGDA 431

Query: 182 YATLA-LVWLIREKKPKLFEYL 202
            AT   L  L+     + F+  
Sbjct: 432 QATAQALCKLLPILTSRGFDTF 453


>gi|120436594|ref|YP_862280.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803]
 gi|117578744|emb|CAL67213.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803]
          Length = 258

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 70/223 (31%), Gaps = 27/223 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G +++ DR  + A ++V     K    E        +     E + I
Sbjct: 5   LTKPICFFDLETTGTNISKDRIVEIAVLKVFPNGNK----ESHTWLVNPEREIPAEVIAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +K   +     E +++IH         + GYN+ RFD         R   D    
Sbjct: 61  HGITNEKVANEP-TFKELAQKIHDLIK--GCDLGGYNSNRFDIPLLVEELLRADIDFE-- 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+  +       +                         G E   AH A+AD
Sbjct: 116 --MKNVVAVDVQTIFHKKEQRTLS----------------AAYQFYCGKELEGAHGAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
             AT  ++    +K   L   +    + +  RK  D       
Sbjct: 158 TEATYEVLKSQLDKYQDLENDMKWLADFSSRRKFADFAGFISF 200


>gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 234

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G +   DR  +  GV +  ++    +   F           P+A+ + GI+ 
Sbjct: 4   IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++ L   V  AE      +F    +   +  +N  FD  +      R             
Sbjct: 62  EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 114

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GIE  H   H A  D   
Sbjct: 115 --IVDTLALARRKHPMGPN--------------SLDALCKRYGIENSHRTLHGALLDAQI 158

Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207
              +   +   K        +  +
Sbjct: 159 LAEVYIELIGGKQTALGLTMESGS 182


>gi|15606258|ref|NP_213636.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5]
 gi|6014995|sp|O67074|DPO3E_AQUAE RecName: Full=DNA polymerase III subunit epsilon
 gi|2983450|gb|AAC07031.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5]
          Length = 202

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 58/206 (28%), Gaps = 27/206 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D E  G DV        A VRV       E            Y        +TGI
Sbjct: 18  TFVVIDLEATGFDVEKSEVIDLAAVRV-EGGIITEKFSTL---VYPGYFIPERIKKLTGI 73

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +    +E      + +F       I+  + +  D  +            Y   + 
Sbjct: 74  TNAMLVGQPTIE----EVLPEFLEFVGDNIVVGHFVEQDIKFINK---------YTKQYR 120

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R   L  ++      P   +          + L+++A   G E    H A  D   
Sbjct: 121 GKKFRNPSLCTLKLARKVFPGLKK----------YSLKEIAENFGFETNGVHRALKDATL 170

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209
           T  +   I E+    +     Y  K 
Sbjct: 171 TAEIFIKILEELWFKYGIGDYYSLKR 196


>gi|163854939|ref|YP_001629237.1| DNA polymerase III subunit epsilon [Bordetella petrii DSM 12804]
 gi|163258667|emb|CAP40966.1| DNA polymerase III, epsilon chain [Bordetella petrii]
          Length = 241

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I+D ET G D +   R  +   V +        +    +     D   DPEA+ + G+T
Sbjct: 4   IIFDTETTGLDPSQGHRIVEIGCVEI-VNRVVTGNHLHIY--LNPDRDSDPEALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+ +++  +F        +  +N  FD  +                   
Sbjct: 61  TEFLADKPR-FADVAQQFLEFIQGAE---LIAHNAAFDVKFFNAELSMIGRGDLS----- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                          A   D +Q            L  L   +GI   H   H A  D  
Sbjct: 112 ------------QYCALVTDSLQHARTLYPGKRNSLDALCDRHGISNAHRTLHGALLDSQ 159

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 160 LLAEVWLAMTRGQD 173


>gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
 gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
          Length = 457

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 64/206 (31%), Gaps = 28/206 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D   E ++           +    P  V +TGI 
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIYKFDGH-EVVDQVISL---VNPERPIQPFVVGLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E ++RI +       CI+  +N +FD    R  F R  Y+        
Sbjct: 58  NDMLRNAPK-FYEIAKRILEITQD---CILVAHNAKFDYRILRTEFRRLGYE-------- 105

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                        G  S+ L  L  A GI   + H A  D  AT
Sbjct: 106 ------------YERETLCSVELSKKLLPGHASYSLGKLTKALGIPISSRHRADGDAIAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQ 210
           + L  L+ +K         + + K +
Sbjct: 154 VKLFKLLLQKDVDKEIIKANIKTKPK 179


>gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 29/253 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G     D   + AGV++ +  E I+  E F       +      + +TGIT    
Sbjct: 1   DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDDMV 56

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                        + + F   +   I+  +N  FD  +    + +   +         N+
Sbjct: 57  KGSDP-----IDVVLKQFKEWSGDNILVAHNASFDMGFINTAYEKVGIE------KAKNA 105

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D L++ R +Y                 + +L  L     I     H A  D  AT  L
Sbjct: 106 VVDTLELARFLYPHF-------------KNHRLNTLTKKFNIILEQHHRAVFDAEATAYL 152

Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
            W + +   ++ +  +     + + +    +   P                       + 
Sbjct: 153 AWKLIKDAKEMHDIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI 212

Query: 248 RYKDSVIGCNLSG 260
            Y   V     S 
Sbjct: 213 NYFYRVPRIPRSQ 225


>gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
 gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
          Length = 248

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G +   DR  +  GV +  ++    +   F           P+A+ + GI+ 
Sbjct: 18  IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 75

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++ L   V  AE      +F    +   +  +N  FD  +      R             
Sbjct: 76  EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 128

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 129 --IVDTLALARRKHPMGPN--------------SLDALCKRYGIDNSHRTLHGALLDAQI 172

Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207
              +   +   K        +  +
Sbjct: 173 LAEVYIELIGGKQTALGLTMESGS 196


>gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
 gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
          Length = 248

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G +   DR  +  GV +  ++    +   F           P+A+ + GI+ 
Sbjct: 18  IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 75

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++ L   V  AE      +F    +   +  +N  FD  +      R             
Sbjct: 76  EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 128

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 129 --IVDTLALARRKHPMGPN--------------SLDALCKRYGIDNSHRTLHGALLDAQI 172

Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207
              +   +   K        +  +
Sbjct: 173 LAEVYIELIGGKQTALGLTMESGS 196


>gi|119896359|ref|YP_931572.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119668772|emb|CAL92685.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 231

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 54/193 (27%), Gaps = 30/193 (15%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           + + + D+ET G       RP + A V V R    I+  +              E   +T
Sbjct: 29  DTYAVIDFETTGMAPEHGARPTEIAVVLV-RNGCVIDRYQSLM---NAGVHVPYEIQALT 84

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT           A+   +   F     +  +  +N  FD  +      R         
Sbjct: 85  GITNAMVRAAP-PLAQVMAQAADFV---GSHALVAHNAAFDRKFWDAELDRLGR------ 134

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180
                         R    F    +        + + KL  L    G+      H A AD
Sbjct: 135 --------------RREADFVCSLLLSRRVFPDSPNHKLGTLVRTLGLPASGRFHRALAD 180

Query: 181 VYATLALVWLIRE 193
             AT  L   I  
Sbjct: 181 AEATAQLFARIAH 193


>gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|189025128|ref|YP_001935896.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690204|ref|ZP_05153458.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254694694|ref|ZP_05156522.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696321|ref|ZP_05158149.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700703|ref|ZP_05162531.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|254705074|ref|ZP_05166902.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|254709049|ref|ZP_05170860.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254713525|ref|ZP_05175336.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254716120|ref|ZP_05177931.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|254731237|ref|ZP_05189815.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256030574|ref|ZP_05444188.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256060036|ref|ZP_05450218.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|256158570|ref|ZP_05456460.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253981|ref|ZP_05459517.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256258458|ref|ZP_05463994.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260169479|ref|ZP_05756290.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99]
 gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330]
 gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1
           str. 9-941]
 gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA
           polymerase 3, epsilon subunit [Brucella melitensis
           biovar Abortus 2308]
 gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840]
 gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365]
 gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445]
 gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99]
 gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
          Length = 234

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G +   DR  +  GV +  ++    +   F           P+A+ + GI+ 
Sbjct: 4   IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++ L   V  AE      +F    +   +  +N  FD  +      R             
Sbjct: 62  EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 114

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 115 --IVDTLALARRKHPMGPN--------------SLDALCKRYGIDNSHRTLHGALLDAQI 158

Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207
              +   +   K        +  +
Sbjct: 159 LAEVYIELIGGKQTALGLTMESGS 182


>gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
          Length = 762

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 97/329 (29%), Gaps = 27/329 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI+D ET G     D   +   V++ +    I+  + F       +L     + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +               I QF        +  +N++FD  +      R   D        
Sbjct: 463 DEMVQNADDENI----VIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDII------ 512

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                T   L  LA    +   + H A  D  AT
Sbjct: 513 TQPVVDTLEVSRLLH-------------PEQTRHTLDSLAKKYNVVLEHHHRANQDAEAT 559

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L++ + +   + F+     +  +  +     +   P                      
Sbjct: 560 GYLMFKLLDAFYERFQEANLGKMNDYAKFGQVYKRAKPNHMTVLAINKVGLKNMYKLVSL 619

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
              +Y   +    LS   R+ + L       +       ++       ++  +     + 
Sbjct: 620 ASTKYFYRLPRTPLSELKRLHEGLLYGSGCLQGDVFISMMQKGYDATREKARIYDFLEVQ 679

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQ 333
           P    +    ++   D K   E +T + +
Sbjct: 680 PPAAYQHLLDDKLIKDKKELQEIITNIYK 708


>gi|146307095|ref|YP_001187560.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp]
 gi|145575296|gb|ABP84828.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
          Length = 252

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 58/201 (28%), Gaps = 31/201 (15%)

Query: 3   NHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58
           N +V+ D ET G  V    R  +   V      E +        F      D   D  A+
Sbjct: 8   NRYVVLDTETTGMPVTDGHRIIEIGCV------ELLGRRLTGRHFHVYLNPDREIDEGAI 61

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT +          + +   ++F       I   +N  FD  +  N F        
Sbjct: 62  AVHGITNEYVADKPR-FRDVADEFYEFIKGAQLII---HNAAFDVGFINNEFALLGQSER 117

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                +  S  D L + R  +    +               L  L    G+++ N   H 
Sbjct: 118 AD-VSDYCSVLDTLMMARERHPGQRN--------------SLDALCKRYGVDNSNRELHG 162

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D      +   +   +  
Sbjct: 163 ALLDSEILADVYLAMTGGQTH 183


>gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256045675|ref|ZP_05448553.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC
           23457]
 gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 234

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G +   DR  +  GV +  ++    +   F           P+A+ + GI+ 
Sbjct: 4   IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++ L   V  AE      +F    +   +  +N  FD  +      R             
Sbjct: 62  EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 114

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 115 --IVDTLALARRKHPIGPN--------------SLDALCKRYGIDNSHRTLHGALLDAQI 158

Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207
              +   +   K        +  +
Sbjct: 159 LAEVYIELIGGKQTALGLTMESGS 182


>gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 248

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 27/204 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G +   DR  +  GV +  ++    +   F           P+A+ + GI+ 
Sbjct: 18  IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 75

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++ L   V  AE      +F    +   +  +N  FD  +      R             
Sbjct: 76  EQLLDKPV-FAEILDEFLEFI---DGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 128

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R  +   P+               L  L    GI+  H   H A  D   
Sbjct: 129 --IVDTLALARRKHPIGPN--------------SLDALCKRYGIDNSHRTLHGALLDAQI 172

Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207
              +   +   K        +  +
Sbjct: 173 LAEVYIELIGGKQTALGLTMESGS 196


>gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
 gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
          Length = 375

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 48/189 (25%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGSSADHRITEIGVVEIGPLG-----VSTWTSLVNPGQAIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                        F+      F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRDAPT----FASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLTFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   +G+     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHGLVPAARHRALADADLL 165

Query: 185 LALVWLIRE 193
                 + E
Sbjct: 166 WQFWRQLHE 174


>gi|325953822|ref|YP_004237482.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323436440|gb|ADX66904.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 253

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 7/123 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T +   +D ET G ++A DR  + A V+           E+   +   +    PE   I
Sbjct: 3   LTKNICFFDLETTGTNIAKDRIVEIAIVKAYTNG----EKEIKTWRVNPEMPIPPETSLI 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E + +I +     +  + G+N+ RFD       F RN  D    
Sbjct: 59  HGIYDEDVKDAP-TFREIAPQIVELIKDSD--LAGFNSNRFDIPLLAEEFLRNGIDFDLE 115

Query: 121 SWD 123
              
Sbjct: 116 KHR 118


>gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 375

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 48/189 (25%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGSSAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQSIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A  +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DDMVRDAP-SFASLAPTL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A                   L  L   +G+     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PREARHGLDALIERHGLVPAARHRALADADLL 165

Query: 185 LALVWLIRE 193
                 + E
Sbjct: 166 WQFWRQLHE 174


>gi|329929867|ref|ZP_08283543.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
 gi|328935845|gb|EGG32306.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
          Length = 971

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 27/188 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D+ET G + + D   Q     ++        + V+           P    +TGI
Sbjct: 15  KFAVLDFETTG-NQSADEIIQVGLAIIEEDRSI---SRVYGTYVNPGIPIPPFITGLTGI 70

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +            E    +          ++  +N+ FD  + +N   R  Y        
Sbjct: 71  SDSDVADAP-SLEEMMMELVPMLDD---VVLVGHNVAFDFNFLQNALDRCGYLP------ 120

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  +LD M  +    P             S++L  ++   G+EH   H A +D  A
Sbjct: 121 ---FSGRILDTMHFLKICFPSL----------PSYQLGMVSSHFGLEHDRPHQADSDALA 167

Query: 184 TLALVWLI 191
           T   +   
Sbjct: 168 TAYALLKC 175


>gi|54302908|ref|YP_132901.1| putative DNA polymerase III [Photobacterium profundum SS9]
 gi|46916332|emb|CAG23101.1| putative DNA polymerase III [Photobacterium profundum SS9]
          Length = 214

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 59/202 (29%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  ++ D+ET G      DR  +   V +    E ++  +         +         T
Sbjct: 13  NTVIVLDFETTGLSPTQGDRAIEIGAVLM-ENGEVVDRFQKLM---NPGFRVSSFIESYT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT            E   +   F    N   +  +N  FD  +          D    S
Sbjct: 69  GITNNMLRTA-APCDEVMDQFTDFIGDYN---LVAHNASFDKRFLDAE-----LDIINRS 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
           +  G      + + R +Y               A + KL  L     I+H    H A AD
Sbjct: 120 Y--GGEFACSMLIARRLY-------------QNAPNHKLGSLVAYKNIDHDGVFHRALAD 164

Query: 181 VYATLALVWLIREKKPKLFEYL 202
              T  L   + E     F  +
Sbjct: 165 SEMTAKLWLQMLEDMRNQFHII 186


>gi|114565211|ref|YP_752725.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114336504|gb|ABI73886.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 204

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 30/193 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           + N  V+ D+ET G      DR  +   V++    + +++ +            +     
Sbjct: 3   LANQVVVLDFETTGLSPDNGDRAIEIGAVKL-VNGQIVDTFQEL---INPGRRVNSFIEQ 58

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            TGI+            +   +  +F    +   +  +N  FD  +    F  +      
Sbjct: 59  YTGISNDMLKHAPTS-KQVMGQFAKFI---DGFNLVAHNASFDKKFLDAEFSHS------ 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178
                          +     F+   +        A + KL  L   + + +    H A 
Sbjct: 109 --------------KLHYSGQFACSLLLSRRISQDAPNHKLGTLVDHHQLPNDGVFHRAL 154

Query: 179 ADVYATLALVWLI 191
           AD   T  L    
Sbjct: 155 ADATMTSHLWLHQ 167


>gi|255010437|ref|ZP_05282563.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
           3_1_12]
 gi|313148241|ref|ZP_07810434.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12]
 gi|313137008|gb|EFR54368.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12]
          Length = 257

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 82/257 (31%), Gaps = 30/257 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +     E+  +
Sbjct: 5   LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTLRINPEMPIPAESSAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E ++ I          + G+N+ RFD       F R        
Sbjct: 61  HGIFDADVADCP-TFKEVAKSIANDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+  +   F    + +   +    S   +     N     +AH A+AD
Sbjct: 112 -----------VDIDMSKRKFVDVQVIFHKMEQRTLSAAYKFYCGRN---LEDAHTAEAD 157

Query: 181 VYATLALVWLIREKKPK--LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
             AT  ++    ++ P+    +  +     +  + +     M    +   +F   +    
Sbjct: 158 TRATYEVLMAQLDRYPEDLQNDMSFLADYSSYNKNVDFAGRMVYDDNGVEVFNFGKYKGQ 217

Query: 239 LIAPVA-WHPRYKDSVI 254
            ++ V    P Y   ++
Sbjct: 218 PVSEVLKKDPGYYSWIL 234


>gi|212551002|ref|YP_002309319.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549240|dbj|BAG83908.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 258

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 66/215 (30%), Gaps = 27/215 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    V +D ET G ++  DR  + + ++V       +  E+   +   +     EA  I
Sbjct: 5   LKRPIVFFDLETTGTNIISDRIVEISYLKVMPN----DEKEIKTRRINPEIPIPKEASDI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +      +     ++ +          + GYN+ RFD       F R   D    
Sbjct: 61  HGITNEDVKNA-LPFKAIAKLLASQIE--GCDLAGYNSNRFDIPILAEEFLRAGIDVDWT 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+  +                         L  L      +  NAH A  D
Sbjct: 118 KQKF----VDVQTIFH----------------KKEPRTLLAALKFYCNRDLENAHSAAED 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215
             AT  ++    +K P L   +    N +   K  
Sbjct: 158 AKATYEVLKAQLDKYPDLQNDIIFLSNYSSFNKKN 192


>gi|127512799|ref|YP_001093996.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
 gi|126638094|gb|ABO23737.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
          Length = 204

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 58/202 (28%), Gaps = 31/202 (15%)

Query: 1   MT-NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+ +  V+ D+ET G      DR  +   V++ +Q   ++  +         +       
Sbjct: 1   MSQDAIVVLDFETTGLSPLQGDRAIEIGAVKL-QQGVVVDRFQQLM---NPGFAVSSFIA 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
             TGIT          E         F      C +  +N  FD  +    F R   +  
Sbjct: 57  DYTGITNAMLSDAPSCET-VMADFADFIQ---GCHLVAHNASFDQKFLTAEFARIDLEQ- 111

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDA 177
                                 F+   +          + +L  L    GI +    H A
Sbjct: 112 -------------------SQPFACSLLLARRLFQAVPNHQLGTLVNYLGIANDGVFHRA 152

Query: 178 KADVYATLALVWLIREKKPKLF 199
             D   T AL   + +   + +
Sbjct: 153 LNDAEVTGALWLALSDAVSQRW 174


>gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM
           2032]
 gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM
           2032]
          Length = 218

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 30/190 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D+ET G      DRP +   VR++     ++  +         +        +TGI+
Sbjct: 7   IVLDFETTGHSPNRGDRPIEVGAVRIEHD-RIVDRFQALM---NPGFTISWFIERLTGIS 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E E   R   +        +  +N  FD  +                   
Sbjct: 63  NDLIAHAPPCE-EVMNRFADWM---GDLPLVAHNAGFDRAFLDAELALIGR--------- 109

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183
                            +   +        + + KL  L    GI      H A AD   
Sbjct: 110 -----------HQSNPMACTVLASRRLFPESPNHKLATLVNHLGIFTDGTFHRALADAEM 158

Query: 184 TLALVWLIRE 193
           T  +   + +
Sbjct: 159 TGHVWIAMTD 168


>gi|260063517|ref|YP_003196597.1| putative DNA polymerase III subunit epsilon [Robiginitalea
           biformata HTCC2501]
 gi|88782961|gb|EAR14135.1| putative DNA polymerase III epsilon chain [Robiginitalea biformata
           HTCC2501]
          Length = 258

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 7/117 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++     +D ET G ++A DR  + A ++V     K    E              EA  I
Sbjct: 5   LSKPICFFDLETTGTNIATDRIVELAILKVFPNGNK----ESKTWLVNPGVPIPEEASAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            GIT +K   +     E +R ++Q        + G+N+ RFD         R   D 
Sbjct: 61  HGITDEKVAGEP-TFRELAREVYQMIQ--GCDLAGFNSNRFDIPLLAEELLRAGVDF 114


>gi|213962688|ref|ZP_03390949.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
           Capno]
 gi|213954683|gb|EEB66004.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
           Capno]
          Length = 442

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 69/249 (27%), Gaps = 28/249 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D      +           +         +TGI 
Sbjct: 2   YAILDIETTGGKYDEEGITEIAIYQFDGH-TITDQFISL---INPERPIQDYVTKLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++RI +       CII  +N  FD    +  F R  Y+  + +   
Sbjct: 58  NKMLRNAPK-FYEIAKRIVEITE---GCIIVGHNAAFDYRILQTEFRRLGYEYIKTT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                           S+ L  L  + GI     H A  D  AT
Sbjct: 111 -----------------LCTVELSQQLIPDKESYSLGKLVRSLGIPMSERHRASGDAMAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           L L   + EK  K        +N  +L        +   +  +       +    I  V 
Sbjct: 154 LNLFKYLLEKDTKKSIITASVKNDVRLEMASRHLKILDALPETLGVFYIHNKEGKIIYVG 213

Query: 245 WHPRYKDSV 253
            H   K  V
Sbjct: 214 KHKNIKGRV 222


>gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 298

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 32/193 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     D   +   +RV R  E  +  E        +   D     +TGIT
Sbjct: 12  YCVLDTETTGLSAYYDEVIEIGILRV-RNGEITDRYEQL---IKPENEIDGFITSLTGIT 67

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       +E +    +  F     + II  +N  FD  +    F+ +  + Y      
Sbjct: 68  NEMVADKPAIE-DVKSDVLAFL---GSDIIVGHNTSFDVRFLAAGFHEDIANEY------ 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +D M+      PD              +L DL+        N H A AD   T
Sbjct: 118 -------MDTMQFARKLYPDLTH----------HRLSDLSEYL-YLTNNEHRALADCVTT 159

Query: 185 LALVWLIREKKPK 197
             L   ++ +  +
Sbjct: 160 EELYEAMKTEMIR 172


>gi|330503134|ref|YP_004380003.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328917420|gb|AEB58251.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
          Length = 252

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 31/201 (15%)

Query: 3   NHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58
             +V+ D ET G  V    R  +   V      E +        F      D   D  A+
Sbjct: 8   KRYVVLDTETTGMPVTDGHRIIEIGCV------ELLGRRLTGRHFHVYLNPDREIDEGAI 61

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT +          E +   ++F       I   +N  FD  +  N F        
Sbjct: 62  AVHGITNEYVADKPR-FREVADEFYEFIKGAQLII---HNAAFDVGFINNEFALLGQSER 117

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                +  S  D L + R  +    +               L  L    G+++ N   H 
Sbjct: 118 AD-VSDYCSVLDTLMMARERHPGQRN--------------SLDALCKRYGVDNSNRELHG 162

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D      +   +   +  
Sbjct: 163 ALLDSEILADVYLAMTGGQTN 183


>gi|163753129|ref|ZP_02160253.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
 gi|161326861|gb|EDP98186.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
          Length = 1460

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 74/212 (34%), Gaps = 30/212 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     I   + +  +P    +P 
Sbjct: 2   YLIFDTETTGLPKRWDAPISDTDNWPRCIQIAWQLHDELGNLI-EHQDYLVQPDGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A   G+   E   + +   S   T  I   N+ FD       FYR  
Sbjct: 61  -DAEKIHGISTELAAEQGISLQEVLEKFNIALSK--TKFIVGQNVGFDVNIMGAEFYR-- 115

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
                   +N  ++   L V+      +    Q P    G   FKL  L        G+ 
Sbjct: 116 --------ENVANKLQELPVLDTCTEDTAQLCQIPGGRGGK--FKLPTLTELHQYLFGVG 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
              AH+A ADV AT      +  +K    E L
Sbjct: 166 FGEAHNATADVEATTRCFLELIRRKEYTIEQL 197


>gi|289450465|ref|YP_003475243.1| DNA polymerase III subunit alpha, Gram-positive type [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185012|gb|ADC91437.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 1495

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 68/219 (31%), Gaps = 19/219 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITGI 63
           +V  D ET G D   +R  +    +  R    + E +E F      +       + +TGI
Sbjct: 445 YVALDVETTGLDPVKERVIEIGAAKFVRNSSGEYEVSETFHRMLNPEVKLPEFIMKLTGI 504

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +    G+   +  + +  F        +  +N  FD  + R   +R   D       
Sbjct: 505 TQAEV-DSGIKPLQAVQDLIDFV---GDLPVCAHNAMFDIGFIRAEGFRT-QDINDPKLK 559

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L +    +                ++ KL  +     I+  + H A  D  A
Sbjct: 560 FNPITIDTLRLSVLFW-------------PSLSNHKLDTVCNFLQIDLAHHHRAVDDAIA 606

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
              +     +   +L     + R+     + I  +   P
Sbjct: 607 CGQIFARACQIDSELTLTSLNQRSGLLRPEEITDKEHKP 645


>gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 375

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 49/189 (25%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGSSAEHRITEIGVVEIGPLG-----VSTWTTLVNPGQAIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A  +  + +     +  +   +N  FD  + R  F R            
Sbjct: 70  DEMVRDAP-SFASLAPALVERL---DGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A                   L  L   +G+     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PREARHGLDALIERHGLVPAARHRALADADLL 165

Query: 185 LALVWLIRE 193
                 + E
Sbjct: 166 WQFWRQLHE 174


>gi|291287762|ref|YP_003504578.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884922|gb|ADD68622.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 205

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 59/210 (28%), Gaps = 29/210 (13%)

Query: 4   HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F ++D ET G       R  +   V+V      ++  + F             A  + G
Sbjct: 10  TFTVFDTETTGMSPDKGARLLEIGAVKVKPGL-VLDLQDSFCTLINPKAPIPYNAYSVHG 68

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+            E    +  FFS     II  +N RFD  +  +              
Sbjct: 69  ISTAMVADKP----EIKDVLPGFFSFTENTIIAAHNARFDCSFVSHHSAEC--------- 115

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH----VNAHDAK 178
                      ++  +           S   G  S+ L +L     ++        H A 
Sbjct: 116 ----------CIVNPMTKIVDTVKLAKSAHSGLKSYSLGNLIHYFSMDIPLPDTYRHRAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNK 208
            D   T  L+ +  +K          + +K
Sbjct: 166 YDAAHTALLLTICLKKLAAQDICTMRHISK 195


>gi|88801444|ref|ZP_01116972.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P]
 gi|88782102|gb|EAR13279.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P]
          Length = 462

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 28/201 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G      +  + + +  D + + ++           +         +TGIT
Sbjct: 3   YAVVDIETTGNGPKGQKITEISALIFDGK-KIVDEFTSL---VNPEQNIPAFITSLTGIT 58

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E ++++ +        I   +N+ FD    +  F    +D  R     
Sbjct: 59  NAMVRNAPR-FFEIAKKVAEITEN---TIFVAHNVNFDYNIIQAEFKSLGFDFKRKK--- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L ++     I     H AK D  AT
Sbjct: 112 -------LCTIRLTRKI----------IPGLPSYSLGNICTGENIPINGRHRAKGDAEAT 154

Query: 185 LALVWLIREKKPKLFEYLYDY 205
             L+  + E+        +  
Sbjct: 155 AELLRRLIERDENFTINSFLN 175


>gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149]
 gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149]
          Length = 465

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 50/187 (26%), Gaps = 28/187 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G D   D   Q   VRV    + I   EVF           P +  +  I
Sbjct: 272 TFVVFDSETTGLDPHTDEVVQLGAVRV-VNGKII-EGEVFDTLVNPGRTIPPGSTAVHQI 329

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                           R  HQF       +I  +N  FD  + R                
Sbjct: 330 NDAMVADAPG-FDVACRAFHQF---AEHAVIVAHNAPFDMAFLRRQCR----------NQ 375

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181
           +      +LD +                  G+    L  L       I     H    D 
Sbjct: 376 DYAFDNPVLDTVHLSAVVF----------GGSAEHTLDALCNRLNVHIPDDVRHTGLGDA 425

Query: 182 YATLALV 188
            AT   +
Sbjct: 426 LATAKAL 432


>gi|59713199|ref|YP_205974.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
 gi|59481447|gb|AAW87086.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 212

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 60/199 (30%), Gaps = 30/199 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  V+ D+ET G      DR  +   V++      ++  +         +   P     T
Sbjct: 13  HTVVVLDFETTGLSPNQGDRAIEIGAVKL-ENGVVVDRFQGLM---NPGFRVSPFIENYT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +          E       F      C +  +N  FD  +          +     
Sbjct: 69  GISNRMLADA-ASCDEVMNEFANFIQ---GCNLVAHNASFDKRFLDGELALIQREY---- 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                   D    +      + +          A+S KL DL   + IE+    H A AD
Sbjct: 121 ------DGDFACSLLVSRRLTQE----------ASSHKLGDLVAYHQIENDGVFHRALAD 164

Query: 181 VYATLALVWLIREKKPKLF 199
              T +L  ++ E   +  
Sbjct: 165 AEVTASLWLVLLETLEREH 183


>gi|90414417|ref|ZP_01222394.1| putative DNA polymerase III [Photobacterium profundum 3TCK]
 gi|90324530|gb|EAS41086.1| putative DNA polymerase III [Photobacterium profundum 3TCK]
          Length = 214

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 59/200 (29%), Gaps = 30/200 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  ++ D+ET G      DR  +   V +    + ++  +         +         T
Sbjct: 13  NTVIVLDFETTGLSPTQGDRAIEIGAVLM-ENGKVVDRFQKLM---NPGFRVSSFIEGYT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT            E   +   F    N   +  +N  FD  +          D  + S
Sbjct: 69  GITNNMLRTA-APCNEVMDQFTDFIGDYN---LVAHNASFDKRFLDAE-----LDIIKRS 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
           +  G      + + R +Y               A + KL  L     I+H    H A AD
Sbjct: 120 Y--GGEFACSMLIARRLY-------------QNAPNHKLGSLVAYKNIDHDGVFHRALAD 164

Query: 181 VYATLALVWLIREKKPKLFE 200
              T  L   + E     F 
Sbjct: 165 SEMTAKLWLQMLEDLQNQFH 184


>gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 375

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 49/189 (25%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G  +A  R  +   V +            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGSLADHRITEIGVVEIGPLG-----VSTWTSLVNPGQAIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                        F+      F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRDAPT----FASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   +G+     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHGLVPAARHRALADADLL 165

Query: 185 LALVWLIRE 193
                 + +
Sbjct: 166 WQFWRQLHD 174


>gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 204

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 66/204 (32%), Gaps = 32/204 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   + ++D ET G D   D+  + A +R D    +    +V   K        PE + +
Sbjct: 1   MREIYTVFDLETTGLDPTKDQITEIAAIRTDL-IREYGRLDVRITK-NSGTKLTPEIINL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI        G+ E      +  F S   + ++ ++       +  +   R   +    
Sbjct: 59  TGINESMMRG-GIPEELAIPLLACFMS--GSIVVAHH-----APFDLSFLARYLVEP--- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                              +            +   S  L  +A   GIE    H A AD
Sbjct: 108 -------------------SSFVCTRVLSKLVEPGESASLAAVAERRGIELTGHHRAMAD 148

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
           V AT+ +   ++ +   L    Y+
Sbjct: 149 VEATVKIFQQLKAEADALGIRYYN 172


>gi|332525056|ref|ZP_08401237.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
 gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 645

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 51/188 (27%), Gaps = 27/188 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + ++D ET G + +  D   Q    R+     K+   E F              V I GI
Sbjct: 455 YTVFDTETTGLEPSAGDEIIQIGATRIVAG--KLRRHESFEQLVDPQRAIPERTVAIHGI 512

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TP        +  E    +H F    +T ++ +N      +                   
Sbjct: 513 TPAMVAGQPTI-REVLPALHAF--AHDTVLVAHNAAFDLRFLELKERAAG---------- 559

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +R         +             L+ +A   G+  +  H A  D   
Sbjct: 560 -----------VRFDMPVLDTLLLSQVLHPNQERHSLEAIAERLGVPVLGRHTALGDAIV 608

Query: 184 TLALVWLI 191
           T  +   +
Sbjct: 609 TAEVFLKM 616


>gi|282856872|ref|ZP_06266130.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens
           W5455]
 gi|282585290|gb|EFB90600.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens
           W5455]
          Length = 196

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 27/184 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D ET G   A     + A +++        S   F            +   I GI 
Sbjct: 10  FTALDIETTGLSPAFCGIVEIAALKIFPDG----SQRSFQMLVDPGRPIPRDVSAIHGID 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         +  +    S      +  +N  FD  +   +  R      +    +
Sbjct: 66  DAMVRGQPS----AADAVAALVSFVGPSPLVLHNAPFDMSFLNPVVRR------QRLQWD 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             + +D L + R  +                 S+ L+ L+     +    H A AD    
Sbjct: 116 SPAVFDTLRLSRQAFPGLN-------------SYSLESLSRFFDFDAGGHHRALADCRYC 162

Query: 185 LALV 188
           + L 
Sbjct: 163 VQLF 166


>gi|27383194|ref|NP_774723.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27356368|dbj|BAC53348.1| bll8083 [Bradyrhizobium japonicum USDA 110]
          Length = 304

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 49/178 (27%), Gaps = 30/178 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V  D ET G D   D   + A V  D           E F           PE   +TGI
Sbjct: 48  VFIDLETTGLDPVADEIVEIAMVPFDYSDDGRIFAVHESFARFRDPGRPIPPEVSAMTGI 107

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +  AE      + F      ++  +N  FD  ++        +  +  SW 
Sbjct: 108 TDAMVAGAAIEPAEI-----EAFLGDTAALVVAHNCSFDRRFAERFCPAFAHLPWACSWA 162

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               R                       +      KL  LA A G  H   H A  D 
Sbjct: 163 EIPWR----------------------EEGFVDGTKLVHLAAACGFFHEG-HRAVHDC 197


>gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI
           454]
 gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 247

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 61/203 (30%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            ++ D ET G +    DR  +   V +    +   +   F+  P  D   DP A+ + G+
Sbjct: 3   LLVLDTETTGLNAKGGDRIIEIGCVEI-VNRQLTGNNLHFYVNPERDS--DPGALAVHGL 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE +  +  F    +  I   +N  FD  +    F       +     
Sbjct: 60  TTEFLRDKPK-FAEIADALRDFVKDADIII---HNAPFDIGFLNAEFAMLGLPPFC---- 111

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
             +   +++D +    A                   L  L    GI   H   H A  D 
Sbjct: 112 --DHCGEVIDTLVQAKAMF-----------PGKRNSLDALCERFGISNAHRTLHGALLDA 158

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
                +   +   +  L   +  
Sbjct: 159 ELLADVYLAMTRGQESLVIDMLA 181


>gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW]
 gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW]
          Length = 699

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 54/203 (26%), Gaps = 31/203 (15%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFI 60
            +V++D ET G + +  D     AGVR+      +  E+ +               +  I
Sbjct: 505 SYVVFDTETTGLNPSQGDEMVALAGVRI-VNGRILTGETFQTL---INPGRAIPAASAAI 560

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT          EA        F       ++  +N  FD  + R             
Sbjct: 561 HGITDAMVAEAPRAEA-VLPPFRAFV---GDAVLVAHNAAFDLKFLRLKQRAAG------ 610

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                         +R         I             L  LA   GI  V+ H A  D
Sbjct: 611 --------------VRFDGPVLDTMILSRQIQGDHGEHSLDGLAARLGIGLVDRHSAMGD 656

Query: 181 VYATLALVWLIREKKPKLFEYLY 203
              T A+   + +          
Sbjct: 657 SLMTAAIFLRLMDMLETQGIRTL 679


>gi|313637226|gb|EFS02740.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           seeligeri FSL S4-171]
          Length = 921

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 28/180 (15%)

Query: 8   YDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
            D ET G      DR  QFA   V    +++E+   F      +         +TGI+P+
Sbjct: 2   VDLETTGNQASREDRIIQFAACFV-ESGKRLETYATF---LNPEKPIPAFIQELTGISPK 57

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 + E + +  I          I   +N+ FD  +      R              
Sbjct: 58  DVKDAPLFE-DVAPIIAGLLED---TIFVAHNVSFDWTFLEREMTRAGI------SLGKM 107

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
            + D +++ R +Y              G  S+KLQDL+   G+ H   H A +D   T  
Sbjct: 108 KKLDTVELARIMY-------------PGIDSYKLQDLSDEFGLGHDKPHQADSDAEVTAD 154


>gi|116492693|ref|YP_804428.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745]
 gi|116102843|gb|ABJ67986.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745]
          Length = 929

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 1   MTNH-FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M    + + D E  G D   D R  Q     V    + +++ +    K            
Sbjct: 1   MNKTKYAVVDLEMTGSDFDGDNRIIQIGCAFV-ENGKIVDTFQS---KVNPQRPIPAGIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++         +    +++        +   +N+ FD  +      R+ Y   
Sbjct: 57  KLTGITDEQVQNAPK-FNDIVDEVYRKLVD---TVFVAHNVEFDFPFLNQELVRSGYPEL 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                      D + + + +++F                ++L+DL     IEH + H A 
Sbjct: 113 ------NIPAVDTVSLSQIVFSF-------------TKGYRLRDLTSYLKIEHDDPHSAD 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           +D  AT  L+  I++   +L     +
Sbjct: 154 SDAIATANLLIAIKKNLQQLPIVTLE 179


>gi|327452827|gb|EGE99481.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1]
          Length = 587

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 21  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 75

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 76  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 126 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 174

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 175 TVDVLHGLIDRVGNLGVTTLE 195


>gi|315085964|gb|EFT57940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3]
          Length = 584

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 18  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 72

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 73  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 122

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 123 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 171

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 172 TVDVLHGLIDRVGNLGVTTLE 192


>gi|315080369|gb|EFT52345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1]
          Length = 597

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 31  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 85

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 86  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 135

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 136 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 184

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 185 TVDVLHGLIDRVGNLGVTTLE 205


>gi|314990240|gb|EFT34331.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3]
          Length = 604

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 38  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 92

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 93  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 142

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 143 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 191

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 192 TVDVLHGLIDRVGNLGVTTLE 212


>gi|314987763|gb|EFT31854.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2]
          Length = 587

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 21  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 75

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 76  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 126 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 174

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 175 TVDVLHGLIDRVGNLGVTTLE 195


>gi|314960311|gb|EFT04413.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2]
          Length = 604

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 38  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 92

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 93  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 142

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 143 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 191

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 192 TVDVLHGLIDRVGNLGVTTLE 212


>gi|313823175|gb|EFS60889.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2]
 gi|313833843|gb|EFS71557.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1]
 gi|314919771|gb|EFS83602.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3]
          Length = 604

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 38  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 92

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 93  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 142

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 143 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 191

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 192 TVDVLHGLIDRVGNLGVTTLE 212


>gi|313818253|gb|EFS55967.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2]
          Length = 597

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 31  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 85

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 86  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 135

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 136 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 184

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 185 TVDVLHGLIDRVGNLGVTTLE 205


>gi|313815838|gb|EFS53552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1]
 gi|314931784|gb|EFS95615.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1]
 gi|314956043|gb|EFT00441.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1]
 gi|314958449|gb|EFT02552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1]
 gi|314976217|gb|EFT20312.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1]
 gi|315088618|gb|EFT60594.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1]
 gi|327451091|gb|EGE97745.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3]
 gi|328753779|gb|EGF67395.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1]
 gi|328760388|gb|EGF73957.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL099PA1]
          Length = 590

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 24  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 78

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 79  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 128

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 129 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 177

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 178 TVDVLHGLIDRVGNLGVTTLE 198


>gi|313809712|gb|EFS47433.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1]
 gi|314915265|gb|EFS79096.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4]
 gi|314978176|gb|EFT22270.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2]
 gi|314983574|gb|EFT27666.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1]
 gi|315098227|gb|EFT70203.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2]
 gi|327330574|gb|EGE72320.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL097PA1]
 gi|327442625|gb|EGE89279.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2]
 gi|327445348|gb|EGE92002.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2]
          Length = 597

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 31  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 85

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 86  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 135

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 136 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 184

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 185 TVDVLHGLIDRVGNLGVTTLE 205


>gi|313791823|gb|EFS39934.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1]
          Length = 597

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 31  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 85

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 86  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 135

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 136 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 184

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 185 TVDVLHGLIDRVGNLGVTTLE 205


>gi|313764773|gb|EFS36137.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1]
 gi|313807207|gb|EFS45694.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2]
 gi|313813245|gb|EFS50959.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1]
 gi|313820015|gb|EFS57729.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1]
 gi|313825546|gb|EFS63260.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1]
 gi|313830622|gb|EFS68336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1]
 gi|315096369|gb|EFT68345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1]
 gi|315101083|gb|EFT73059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1]
 gi|327325880|gb|EGE67670.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL096PA2]
 gi|328753125|gb|EGF66741.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1]
 gi|328759130|gb|EGF72746.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2]
 gi|332675138|gb|AEE71954.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266]
          Length = 587

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 21  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 75

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 76  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 125

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 126 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 174

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 175 TVDVLHGLIDRVGNLGVTTLE 195


>gi|289426896|ref|ZP_06428622.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
 gi|295130296|ref|YP_003580959.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Propionibacterium acnes SK137]
 gi|289159985|gb|EFD08163.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
 gi|291376452|gb|ADE00307.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Propionibacterium acnes SK137]
 gi|313772552|gb|EFS38518.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1]
 gi|313802090|gb|EFS43322.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2]
 gi|313838422|gb|EFS76136.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1]
 gi|314918505|gb|EFS82336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1]
 gi|314925502|gb|EFS89333.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3]
 gi|314963121|gb|EFT07221.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1]
 gi|314973624|gb|EFT17720.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1]
 gi|315077585|gb|EFT49643.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2]
 gi|315084628|gb|EFT56604.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2]
 gi|327447777|gb|EGE94431.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1]
 gi|327453554|gb|EGF00209.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2]
          Length = 584

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 18  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 72

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 73  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 122

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 123 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 171

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 172 TVDVLHGLIDRVGNLGVTTLE 192


>gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
 gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
          Length = 198

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 52/181 (28%), Gaps = 27/181 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D       + A V+   Q  +  +      KP        E   I GI  Q 
Sbjct: 24  FDLETTGLDPVRHSVVEIACVKF--QGGEPRAFFSLLVKPPH--PIPAEVTKIHGIGDQD 79

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                         +  F     T ++  +N  FD  + R  + R            G  
Sbjct: 80  VEEAP-PLPSVLPMLESFV---GTHLLVAHNAPFDLSFLRMEYARCGRPYP------GFR 129

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D   + R++                   + L  L  A  I   + H A +D +A   L
Sbjct: 130 AIDTRLLARSV-------------LPHLGRYSLASLTRALDIPLQHHHRALSDAWACGDL 176

Query: 188 V 188
            
Sbjct: 177 F 177


>gi|300703774|ref|YP_003745376.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum
           CFBP2957]
 gi|299071437|emb|CBJ42756.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum
           CFBP2957]
          Length = 242

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + A  DR  +   V +            F+     +   D  A+ + GIT
Sbjct: 4   IVLDTETTGLNAATGDRVIEIGCVEL-VNRRLTGRNLHFY--INPEREIDAGAMAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    I  +       I   +N  FD  +    F R    S      +
Sbjct: 61  NEFVADKPK-FAEVVAEIRDYVQGAEAII---HNAAFDLGFLDMEFRRLGLPS-FREHLD 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
           G+   D L   R ++                    L  L    G+   H   H A  D  
Sbjct: 116 GH--IDTLLEARRMFPG--------------KRNSLDALCDRLGVSNAHRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQNTLVIDML 180


>gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 921

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 32/188 (17%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  FV+ D ET G D   D   +   VRV    +                        +
Sbjct: 1   MSRTFVVLDLETTGLDPQADEIVEVGLVRV-EDGKPGAVFHAL---VRPSRPLPARIKSL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TG+            +E    +  F    N  ++G++      +  R+  YR        
Sbjct: 57  TGLDDADLAERP-DWSEVRPAVTAFL--GNEPVVGHHVHFDLAFLERHAGYRA------- 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +D +D+ R +               G  S++L+ L     +     H A  D
Sbjct: 107 -----TQAYDTVDLARLV-------------LPGLPSYRLELLCAHLDLPERPGHRAMED 148

Query: 181 VYATLALV 188
             A   L 
Sbjct: 149 ARAAAGLF 156


>gi|329955851|ref|ZP_08296654.1| exonuclease [Bacteroides clarus YIT 12056]
 gi|328525231|gb|EGF52281.1| exonuclease [Bacteroides clarus YIT 12056]
          Length = 256

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 83/256 (32%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +     EA  +
Sbjct: 5   LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPAEASAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E +R I          + G+N+ RFD       F R   D    
Sbjct: 61  HGIYDEDVADCP-TFKEVARGIANDIE--GCDLAGFNSNRFDIPVLAEEFLRADVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ R  +           +   + ++K        G    +AH A+AD
Sbjct: 114 -----------IDMSRRKFVDVQVIFHKMEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQL-RKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  ++    ++ P L   +    + +   + +     M        +F   +     
Sbjct: 158 TRATYEVLMSQLDRYPDLQNDVTFLSDYSSFNKNVDFAGRMVYDDKGVEVFNFGKYKGMS 217

Query: 240 IAPVA-WHPRYKDSVI 254
           +A V    P Y   ++
Sbjct: 218 VADVLKRDPGYYSWIL 233


>gi|110678446|ref|YP_681453.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
 gi|109454562|gb|ABG30767.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
          Length = 465

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 51/187 (27%), Gaps = 28/187 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G D   D   Q   VRV    + I   EVF           P +  +  I
Sbjct: 272 TFVVFDSETTGLDPHTDEVVQLGAVRV-VNGKII-EGEVFDTLVNPGRTIPPGSTAVHQI 329

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +               R  HQF       +I  +N  FD  + R                
Sbjct: 330 SDAMVADAPG-FDVACRAFHQF---AEHAVIVAHNAPFDMAFLRRQCRD----------Q 375

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181
           +      +LD +                  G+    L  L       I     H    D 
Sbjct: 376 DYAFDNPILDTVHLSAVVF----------GGSAEHTLDALCDRLNVHIPDDVRHTGLGDA 425

Query: 182 YATLALV 188
            AT   +
Sbjct: 426 LATAKAL 432


>gi|295689870|ref|YP_003593563.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
 gi|295431773|gb|ADG10945.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
          Length = 298

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 65/212 (30%), Gaps = 37/212 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK--IESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D ET G D A D   +F  V    D       +        +P+      P+   +T
Sbjct: 45  IVLDLETTGLDPAKDEIIEFGLVPFTYDAGGRIVAVGEPFSRLRQPSG--PIPPDVTKLT 102

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T        V  AE +  I          +I  +N  FD  ++               
Sbjct: 103 GLTDAMVAGQVVDPAEVATFI------DGAALIIAHNAGFDRRFAEA------------- 143

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                          A   ++    Q   +  G  S KL  LA A G  H   H A  D 
Sbjct: 144 ----------FCPAFAQKPWACSYTQIDWQAHGHESGKLAFLACAYGFFHDG-HRAHHDC 192

Query: 182 YATLAL-VWLIREKKPKLFEYLYDYRNKNQLR 212
            ATL +    +       F+ L     +  +R
Sbjct: 193 LATLEILASPLGATDGSAFQTLLATARRASVR 224


>gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 719

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 53/187 (28%), Gaps = 26/187 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V++D ET G   A  D       VR+       +       KP         A    GI+
Sbjct: 525 VVFDTETTGLSPARGDEIIAIGAVRLVNGRVLQDEYFEQLVKPCRAIPDS--ATRFHGIS 582

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   R   +     R   +F    +  ++  +N  FD  + R    R            
Sbjct: 583 NEDVARAPEIGP-VLRAFSRFIGEES--VLVAHNAAFDMGFLRRAQARAG---------- 629

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                     +          +      D +    L+ +A   G+E    H A AD   T
Sbjct: 630 ----------LAFPQPVLDTLLLSVYLHDHSPDHTLEGVAERLGVEVQKRHSALADARVT 679

Query: 185 LALVWLI 191
             +   +
Sbjct: 680 ADVFARM 686


>gi|296454533|ref|YP_003661676.1| DNA polymerase III subunit epsilon [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183964|gb|ADH00846.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 235

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 56/222 (25%), Gaps = 33/222 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G         +   VRV      ++  +              +   +TGIT
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVRE-GHIVDQFQQL---VNPLRPIPRQITTLTGIT 89

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
                       +   R   + + P        I+G+N                F D   
Sbjct: 90  DAMVADLD-PIDKVLPRFIAWLATPAAGPTVEPIVGHNVSFDLR----------FLDYNT 138

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                        D M+   A  P               +L DL +  GI     H A +
Sbjct: 139 RHIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALS 188

Query: 180 DVYATLAL---VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
           D   T      +     +  +     +         +++  Q
Sbjct: 189 DAIQTQQCFEWMRHYVTEHHESEAIRWKQSPAKNSTEILHQQ 230


>gi|319440229|ref|ZP_07989385.1| putative exonuclease [Corynebacterium variabile DSM 44702]
          Length = 186

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 60/187 (32%), Gaps = 26/187 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK-PADDYLPDPEAVFITGIT 64
           V+ D ET G D   DR  + A +RV             F +              +TG+T
Sbjct: 22  VVVDCETTGLDPDSDRIIEVAALRVRE-----GRPVALFHRVVDPGRPLPGFITSLTGLT 76

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q+  +      +    +  F +      +  +N+ FD  +               +   
Sbjct: 77  DQQVRQAP-PVGDILGDLSAFLAH---DTVVGHNVGFDLAFIDAE--------ITTTHST 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +    L    +  A                 ++L  LA A  ++H  +H   +DV AT
Sbjct: 125 PRAASLSLCTAESARAL--------VPRSRVGRYRLNTLAEAFDLDHRPSHRTVSDVLAT 176

Query: 185 LALVWLI 191
           L L+  +
Sbjct: 177 LDLLHYL 183


>gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10]
          Length = 1436

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 27/218 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G     D   +   V++ +  E IE  + F       +    + + +T IT
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIERFDKF---INPHHPLSEQTINLTSIT 474

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    ++   F        +  +N++FD  +      R            
Sbjct: 475 DEMVSAAD-DEDVVIKQFQDF---YGDRPLCGHNVQFDVGFVNAALRRAGLSEI------ 524

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+V R ++                    L  LA    +   + H A  D  AT
Sbjct: 525 TQPVVDTLEVSRLLH-------------PEQNRHTLDSLAKKYNVSLEHHHRANQDAEAT 571

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
             L++ + +   K +                  +   P
Sbjct: 572 GYLMYKLLDAFKKKYNEDNLNNLNGYAAHGEVYKRARP 609


>gi|71907013|ref|YP_284600.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71846634|gb|AAZ46130.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 204

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 55/192 (28%), Gaps = 30/192 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            +   + D+ET G   A  DR  + A V +    + ++  +                  +
Sbjct: 1   MDVVAVIDFETTGLSPAQGDRATEIAAVIL-ENGKVVDRYQSLM---NAGVRIPSFIEQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+           A+  R +  F        +  +N  FD  +      R        
Sbjct: 57  TGISNAMIRSAP-PAAQVMREVSDFV---GDIPLVAHNASFDCKFWDAEVARIN------ 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
                         ++    F+   +        A S KL  L     +     AH A A
Sbjct: 107 --------------LQRCQEFACSLLLARRLMPLAPSHKLGALIEFAKLPVAGRAHRALA 152

Query: 180 DVYATLALVWLI 191
           D     +L+  +
Sbjct: 153 DAEMAASLLAYL 164


>gi|91795118|ref|YP_564769.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
 gi|91717120|gb|ABE57046.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
          Length = 204

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 30/193 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           + N+ V+ D+ET G    + DR  +   V++    + ++S +            +     
Sbjct: 3   LANNVVVLDFETTGLSPDMGDRAIEIGAVKL-VDGQVVDSFQAL---INPGQRVNSFIEQ 58

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            TGI+ Q              +  +F +      +  +N  FD  +    F  N      
Sbjct: 59  YTGISNQMLKDAPRSNV-VMGQFTEFIA---GFNLVAHNASFDKKFLDAEFSAN------ 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178
                          +     F+   +        A + KL  L   + + +    H A 
Sbjct: 109 --------------KLSYSGQFACSLLLSRRISQEAPNHKLGTLIQHHQLANDGVFHRAL 154

Query: 179 ADVYATLALVWLI 191
           AD   T  L    
Sbjct: 155 ADATMTANLWLHQ 167


>gi|163848275|ref|YP_001636319.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526189|ref|YP_002570660.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
 gi|163669564|gb|ABY35930.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450068|gb|ACM54334.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
          Length = 232

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 12/200 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D   D       V ++     ++ T     KP  D  P  E++ +  +T
Sbjct: 37  YTVIDVETTGLDTRHDALIAVGAVNIENGRVLLKQTWYSLIKPPPDREPSVESIRVHHLT 96

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P +       E      + +        ++  +  + D  +              +    
Sbjct: 97  PAELQNAPPAE----EVLAELLRRIAGRVLVVHVAQVDVRFINAALK-------PFGGKL 145

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D   +   ++  +    + P       + +L+ LA A G+     H+A  D   T
Sbjct: 146 RRPILDTARLALTLHMNARWLGEQPHDMPD-PAIELRGLATALGLPVYAQHNALNDAVTT 204

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L                 
Sbjct: 205 AQLFIAQATILADQGRSNLA 224


>gi|134292561|ref|YP_001116297.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
 gi|134135718|gb|ABO56832.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 205

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 39/225 (17%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    L DR  + A + + R  E ++  +              + V +
Sbjct: 1   MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGEIVDRYQSLM---NAGRRIPSDVVAL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +            S+ + +  +   +  +  +N  FD  + +             
Sbjct: 57  TGITNEMIATAPP----VSKVMKEAAAFVGSHPVVAHNAGFDKRFWQAELGSLG------ 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
                         + A + F+   +        A S +L  LA    +     AH A  
Sbjct: 107 --------------VAADHPFACTMLVARRLYPHARSHRLSSLADLLRLPQAGRAHRAMV 152

Query: 180 DVYATLALVWLIREKKPKLFE---------YLYDYRNKNQLRKLI 215
           D      L   ++    + +                +K ++    
Sbjct: 153 DAEIASHLWCRMQRDIGETYGLRHVDHGLMSRLQTTSKAKVATFF 197


>gi|238917782|ref|YP_002931299.1| DNA polymerase [Eubacterium eligens ATCC 27750]
 gi|238873142|gb|ACR72852.1| DNA polymerase [Eubacterium eligens ATCC 27750]
          Length = 233

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 28/213 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M N +V  D ET G + A+DR  +    RV    +  +                     +
Sbjct: 1   MINRYVALDIETTGLNPAVDRIIEVGMARV-EDGQITQKYSTL---VYPGISVSERITEL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  ++      +E +    I +F        +  +N+ FD  + +     N       
Sbjct: 57  TGIHNEELTGKPRIE-DIIGEITEFIGDW---PVLGHNVIFDFSFLKKAAVNNGLTIND- 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +D ++      P+               L  L     I+   +H A  D
Sbjct: 112 ---------DGIDTLKLARRILPEVEH----------KSLSFLCQYFNIDPGRSHRAYDD 152

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
             +   L   + E KP    +    +    ++K
Sbjct: 153 AVSASLLYAKLEEIKPDDEGFSNTTKLVYTVKK 185


>gi|218130099|ref|ZP_03458903.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697]
 gi|317476592|ref|ZP_07935837.1| exonuclease [Bacteroides eggerthii 1_2_48FAA]
 gi|217987603|gb|EEC53931.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697]
 gi|316907188|gb|EFV28897.1| exonuclease [Bacteroides eggerthii 1_2_48FAA]
          Length = 256

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 80/256 (31%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +     EA  +
Sbjct: 5   LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTMRINPEMHIPAEASAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E +R I          + G+N+ RFD       F R   D    
Sbjct: 61  HGIYDEDVADCP-TFKEVARSIANDIE--GCDLAGFNSNRFDIPVLAEEFLRADVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ R  +           +   + ++K        G    +AH A+AD
Sbjct: 114 -----------IDMSRRKFVDVQVIFHKMEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157

Query: 181 VYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  + +  +        +  +     +  + +     M        +F   +     
Sbjct: 158 TRATYEVLMSQLDRYPELQNDVAFLSDYSSFNKNVDFAGRMVYDDKGVEVFNFGKYKGMS 217

Query: 240 IAPVA-WHPRYKDSVI 254
           +A V    P Y   ++
Sbjct: 218 VADVLRRDPGYYSWIL 233


>gi|332882730|ref|ZP_08450341.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679232|gb|EGJ52218.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 442

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 74/251 (29%), Gaps = 32/251 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  R D   E  +           +         +TGI 
Sbjct: 2   YAILDIETTGGKYDEEGITEIAIYRFDGH-ELTDQFISL---INPERPIQDFVTKLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++RI +        II  +N  FD    +  F R  YD  R +   
Sbjct: 58  NKMLRNAPK-FYEVAKRIVEITQD---TIIVGHNAAFDYRILQTEFRRLGYDYIRTT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                           S+ L  L  + GI     H A  D  AT
Sbjct: 111 -----------------LCTVELSQQLLPEKESYSLGKLVRSLGIPMSERHRASGDALAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM--FGASRSNTALIAP 242
           L L   + EK  K  + +     KN +R  +  +++  L  +          +    I  
Sbjct: 154 LNLFKYLLEKDTK--KTIITASVKNDVRIEMSSRHLKILDELPEKLGIFYMHNEEGKIIY 211

Query: 243 VAWHPRYKDSV 253
           +  H   K  V
Sbjct: 212 IGKHKNIKKRV 222


>gi|315108203|gb|EFT80179.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2]
          Length = 584

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 18  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 72

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 73  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 122

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 123 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 171

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L    ++
Sbjct: 172 TVDVLHGLIDRVGNLGVTTFE 192


>gi|314968043|gb|EFT12142.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1]
          Length = 584

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 18  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 72

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 73  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 122

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 123 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 171

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L    ++
Sbjct: 172 TVDVLHGLIDRVGNLGVTTFE 192


>gi|313827785|gb|EFS65499.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2]
          Length = 590

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 24  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 78

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 79  THAMVRSAPS----LSAVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 128

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 129 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 177

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L    ++
Sbjct: 178 TVDVLHGLIDRVGNLGVTTFE 198


>gi|311740325|ref|ZP_07714155.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304608|gb|EFQ80681.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 229

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 26/188 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G +   DR  + A  R D  +  ++           D     +   I GIT
Sbjct: 31  FAVIDTETTGFNKRYDRIIELAVARFDESFRLVDQWHTL---INPDGK-QIKNSHIHGIT 86

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E      +F +  +  ++  +N  FD         R   D        
Sbjct: 87  NADVAHAP-TFPEVYT---EFAARVDGMVLMAHNAPFDSKMILAEAERITPD-------G 135

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +  +  +D +               +     S+KL  L    G+ +  +H A AD  AT
Sbjct: 136 EDVYFPFVDTI-----------ALAKQMVSLRSYKLSALLDHVGLHNPQSHAAIADATAT 184

Query: 185 LALVWLIR 192
             ++  + 
Sbjct: 185 GQMLNKLF 192


>gi|332662172|ref|YP_004444960.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330986|gb|AEE48087.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 194

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 22/200 (11%)

Query: 5   FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
            +  D ET G  +    P           Q AG+  D +   +E    +  +P    +P 
Sbjct: 2   ILFLDTETTGLPLNWSAPISRVNNWPRMVQLAGLLYDEEGTLLEQLN-YLVRPEGYTIP- 59

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
              V I GIT ++AL +GV  A+               ++  +N+ FD       ++R  
Sbjct: 60  AAVVRIHGITTERALAEGVPVAQVLNDFRSILEKSK--LLVAHNVNFDHAIVGAEYHRYV 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVN 173
            +                  M +        +   S   G    KL++L           
Sbjct: 118 KEDPLLP-------IPKFCTMTSPEVIYHCALPANSPRGGYKWPKLEELHYKLFKEGIKG 170

Query: 174 AHDAKADVYATLALVWLIRE 193
           AHDA  D+ AT    W ++ 
Sbjct: 171 AHDAMVDITATARCYWELKR 190


>gi|329891169|ref|ZP_08269512.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328846470|gb|EGF96034.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 241

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 9/122 (7%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   + +            F      + L  P+A+ + GIT
Sbjct: 5   IVLDTETTGFDPKTGDRLIEVGCIEI-EDLLPTGR--TFHRFINPERLIPPDAIKVHGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY-DSYRWSWD 123
             K         E    + +F        +  +N  FD  +      R       +  W 
Sbjct: 62  DDKVKDAPKFH-EVVDDLMEFL---GDAPLIAHNANFDRNFIDFEIGRIGRTPPPQDRWI 117

Query: 124 NG 125
           + 
Sbjct: 118 DT 119


>gi|160891921|ref|ZP_02072924.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492]
 gi|270296413|ref|ZP_06202613.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480391|ref|ZP_07939491.1| exonuclease [Bacteroides sp. 4_1_36]
 gi|156858399|gb|EDO51830.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492]
 gi|270273817|gb|EFA19679.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903469|gb|EFV25323.1| exonuclease [Bacteroides sp. 4_1_36]
          Length = 256

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 79/256 (30%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +     EA  +
Sbjct: 5   LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTMRINPEMPIPAEASAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E +R I          + G+N+ RFD       F R   D    
Sbjct: 61  HGIYDADIADCP-TFKEVARNIANDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ R  +           +   + ++K        G    +AH A+AD
Sbjct: 114 -----------IDMSRRKFVDVQVIFHKMEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157

Query: 181 VYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  + +  +        +  +     +  + +     M        +F   +     
Sbjct: 158 TRATYEVLMSQLDRYPELQNDVAFLADYSSFNKNVDFAGRMVYDDKGVEVFNFGKYKGMS 217

Query: 240 IAPVA-WHPRYKDSVI 254
           ++ V    P Y   ++
Sbjct: 218 VSDVLKRDPGYYSWIL 233


>gi|329961134|ref|ZP_08299389.1| exonuclease [Bacteroides fluxus YIT 12057]
 gi|328532072|gb|EGF58882.1| exonuclease [Bacteroides fluxus YIT 12057]
          Length = 256

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 82/256 (32%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +     E+  +
Sbjct: 5   LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTMRINPEMHIPAESSAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E +R+I          + G+N+ RFD       F R   D    
Sbjct: 61  HGIYDEDIADCP-TFKEVARKIANDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ R  +           +   + ++K        G    +AH A+AD
Sbjct: 114 -----------IDMSRRKFVDVQVIFHKMEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157

Query: 181 VYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  + +  +        +  +     +  + +     M    +   +F   +     
Sbjct: 158 TRATYEVLMAQLDRYGELQNDVAFLADYSSFNKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217

Query: 240 IAPVA-WHPRYKDSVI 254
           ++ V    P Y   ++
Sbjct: 218 VSEVLKRDPGYYSWIL 233


>gi|156743855|ref|YP_001433984.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
           13941]
 gi|156235183|gb|ABU59966.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 232

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 14/201 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G +   D       V +D    +++        P DD   +PE++ I G+ 
Sbjct: 35  YSVMDVETTGLNPRRDALLAIGLVEIDEGRIRMDRRWYTLVHPPDDAPINPESIRIHGLL 94

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ       ++A     +          ++  +    D  + R    R +          
Sbjct: 95  PQDVEHAPPLDA----VVPDVLRRLTGRVLVVHVADVDIGFLRQAMRRLY---------G 141

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSR-DDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            + R   +D  R  + F            +   + +L+ LA + G+     H+A  D   
Sbjct: 142 VDPRGPAIDTARLAWHFQRHQRLIEGLGSEQEPALQLRALAESLGLPVYPEHNAFNDALT 201

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L                 
Sbjct: 202 TAQLFLAQVSMFEAQSTPRLR 222


>gi|320457724|dbj|BAJ68345.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 235

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 53/194 (27%), Gaps = 28/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G         +   VRV R+   ++  +              +   +TGIT
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRV-RKGHIVDQFQQL---VNPLRPIPRQITTLTGIT 89

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
                       +   R   + + P        I  +N+ FD  +          D    
Sbjct: 90  DAMVADLD-PIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRF---------LDYNTR 139

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                       D M+   A  P               +L DL +  GI     H A +D
Sbjct: 140 HIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALSD 189

Query: 181 VYATLALVWLIREK 194
              T      +R  
Sbjct: 190 AIQTQQCFEWMRHY 203


>gi|53714270|ref|YP_100262.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46]
 gi|60682326|ref|YP_212470.1| putative DNA polymerase III subunit epsilon [Bacteroides fragilis
           NCTC 9343]
 gi|253564786|ref|ZP_04842242.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
 gi|265766238|ref|ZP_06094279.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
 gi|52217135|dbj|BAD49728.1| DNA polymerase III epsilon chain [Bacteroides fragilis YCH46]
 gi|60493760|emb|CAH08550.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
           NCTC 9343]
 gi|251946251|gb|EES86628.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
 gi|263253906|gb|EEZ25371.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
 gi|301163800|emb|CBW23355.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
           638R]
          Length = 257

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 82/257 (31%), Gaps = 30/257 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +     E+  +
Sbjct: 5   LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTLRINPEMPIPAESSAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E ++ I          + G+N+ RFD       F R   D    
Sbjct: 61  HGIYDADVADCP-TFKEVAKSIANDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ +  +           +     ++K        G    +AH A+AD
Sbjct: 114 -----------IDMSKRKFVDVQVIFHKMEQRTLTAAYKF-----YCGRNLEDAHTAEAD 157

Query: 181 VYATLALVWLIREKKPK--LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
             AT  ++    ++ P+    +  +     +  + +     M    +   +F   +    
Sbjct: 158 TRATYEVLMAQLDRYPEELQNDMSFLADYSSYNKNVDFAGRMVYDDNGVEVFNFGKYKGQ 217

Query: 239 LIAPVA-WHPRYKDSVI 254
            ++ V    P Y   ++
Sbjct: 218 SVSEVLKKDPGYYSWIL 234


>gi|326332133|ref|ZP_08198417.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325950104|gb|EGD42160.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 53/184 (28%), Gaps = 26/184 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G D   DR  Q A  ++          E            DP  V + G+T
Sbjct: 29  FAVLDVETTGLDPYRDRVIQVAIRQIAADGTAESEWETL---VNPGAGVDPGPVEVHGLT 85

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       + +  I +  +     +   +N  FD  +      R            
Sbjct: 86  TADLAGAP-PFRDVAATIAERLA---GRVFVAHNAAFDWAFVAVESDRAGVRL------- 134

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L  MR   A + D               L  +A    +E + AHDA  D    
Sbjct: 135 --EVLDWLCTMRFAKALALDV----------PDKSLATIAAYYAVEQLKAHDAGDDTRVA 182

Query: 185 LALV 188
             ++
Sbjct: 183 AEIL 186


>gi|315646467|ref|ZP_07899585.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
 gi|315278110|gb|EFU41430.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
          Length = 961

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 27/232 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D+ET G + + D   Q     ++        + V+           P    +TGI
Sbjct: 2   KFAVLDFETTG-NQSADEIIQVGLAIIEEDRSI---SRVYGTYVNPGIPIPPFITGLTGI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +            E    +          ++  +N+ FD  + +N   R  Y        
Sbjct: 58  SDSDVADAP-SLEEMMMELVPMLDD---VVLVGHNVAFDFNFLQNALDRCGYLP------ 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  +LD M  +    P            +S++L  ++   G+EH   H A +D  A
Sbjct: 108 ---FSGRILDTMHFLKICFPSL----------SSYQLGMVSSHFGLEHDRPHQADSDALA 154

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
           T   +    E+  +L        +     +  D+      +     F A + 
Sbjct: 155 TAYALLKCLEEIDELPLLTIQRLSDLFADEDSDLAWFFDGIRAEREFQAVQG 206


>gi|294140713|ref|YP_003556691.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327182|dbj|BAJ01913.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 206

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 57/199 (28%), Gaps = 30/199 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  +I D+ET G      DR  +   VR+ +    +++ +         +         T
Sbjct: 7   NSVIILDFETTGLSPNQGDRAIEIGAVRI-QDGIVVDTFQELM---NPGFRVSGFIEGYT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+          E E   R   F    N   +  +N  FD  +                
Sbjct: 63  GISNAMLANAAPCE-EVMARFADFIGDHN---LVAHNASFDQRFLDAELDGINL------ 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
              G      + + R +Y               A + KL  L     IE+    H A AD
Sbjct: 113 -SYGGKFACSMLIARRLY-------------QDAPNHKLGGLVEYKQIENDGVFHRALAD 158

Query: 181 VYATLALVWLIREKKPKLF 199
              T  L   + +      
Sbjct: 159 SEMTAKLWLQMLDDMRSEH 177


>gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9]
 gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis
           HLHK9]
          Length = 493

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 52/179 (29%), Gaps = 31/179 (17%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI D ET G  +  DR  +   V V                        P    +TGI+
Sbjct: 6   YVIVDLETTGGHITRDRITEIGLVEVSHG--VTTRWSQL---VNPGQPIPPFIEEMTGIS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE +  +    +  N  ++  +N RFD  + +N F R            
Sbjct: 61  DAMVAEAP-PFAELAPAL---LARLNGKLLIAHNARFDYGFLKNEFRRLGL--------- 107

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKADV 181
                D L  ++      P   +            L  L   +GI+      H A  D 
Sbjct: 108 -TFTTDPLCTVKLSRRLYPQHAK----------HSLDSLIARHGIDVPPGMRHRALGDA 155


>gi|308180572|ref|YP_003924700.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308046063|gb|ADN98606.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 934

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 30/209 (14%)

Query: 1   MTNH--FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M  +  + + D ET G      DR  Q     V +  + I +                  
Sbjct: 1   MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFV-KNNKIINTFAT---DVNPLTTVPAVI 56

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGI+  +  +      + +  ++         +   +N+ FD  +  +   R  Y  
Sbjct: 57  ENLTGISNARVRKAP-PFDDLAGTVYSLLQ---GTVFVAHNVNFDLPFINSELQRVGYPE 112

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                         +D +                   A+SF+L+DL+    I+H + H A
Sbjct: 113 LP---------IQAVDTVSLSQILL----------PTASSFRLRDLSHLLAIDHNHPHSA 153

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYR 206
            +D  AT  L   ++++   L        
Sbjct: 154 DSDAIATAHLFITLQQRLAHLPLITLQQM 182


>gi|268320049|ref|YP_003293705.1| hypothetical protein FI9785_1583 [Lactobacillus johnsonii FI9785]
 gi|262398424|emb|CAX67438.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 320

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 28/239 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +++ + D ET G     DR  +  G+RV    E + +       P  + +P      + 
Sbjct: 30  PDNYTLIDVETTGLSPYRDRITEMGGLRVRH-GEVVATFSELVKFPDSNKVP-AFITKLN 87

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI        G+   E  ++  +F    +  I+GYN               NF       
Sbjct: 88  GIDEATIEEKGLPVQEAIKKYREFI--GSDPIVGYNVNFDL----------NFVYDLAEK 135

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +       D +DV R   +F P               +L D      I     H    D 
Sbjct: 136 YHLTVLNNDYVDVYRLARSFYPQEQH----------NRLLDCMHRLDIAETQEHRGLDDC 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             T      + ++  +LF   +  R +  ++ L        +V  S  F +  ++  ++
Sbjct: 186 LDT----KKVFDEFHRLFRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRSPFAHKNVV 240


>gi|325288177|ref|YP_004263967.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324323631|gb|ADY31096.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 454

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 59/193 (30%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI D ET G     +   + A  R D   + ++           +    P  V +TGI 
Sbjct: 2   YVILDIETTGGKFNEEGITEIAIHRFDGH-KVVDKFISL---VNPEKEIQPFVVKLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++RI +        ++  +N +FD    R  F R  Y+        
Sbjct: 58  DKMLRTAPK-FYEIAKRIVEITED---AVLVAHNAQFDYRILRTEFRRLGYNF------- 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                           S+ L  L  + GI   + H A  D  AT
Sbjct: 107 -------------ERKTLCTVNLSKELIPDKESYSLGKLVRSLGIPVSDRHRANGDALAT 153

Query: 185 LALVWLIREKKPK 197
           L L  L+  K   
Sbjct: 154 LQLFKLLLAKDSN 166


>gi|261363839|ref|ZP_05976722.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           mucosa ATCC 25996]
 gi|288568430|gb|EFC89990.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           mucosa ATCC 25996]
          Length = 479

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 29/176 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  DR  + A +R D Q        V  CKP  +++       +TGI+ 
Sbjct: 34  VVVDLETTGGNLYQDRVTEVALLRFDGQSVCRYEWLVNPCKPIPEFV-----AQLTGISN 88

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +      + E E + ++          ++  +N RFD  + R+ F R   D         
Sbjct: 89  KMVKTAPLFE-EIASQLLPLLQ---GAVVVAHNSRFDYTFLRHEFRRAGIDFAA------ 138

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 L  ++      P+  +            L  +   N I   N H A  DV
Sbjct: 139 ----PALCTVQLSRRLYPEFYK----------HNLDSIIERNAIAVENRHRAMTDV 180


>gi|300767360|ref|ZP_07077272.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300495179|gb|EFK30335.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 936

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 30/209 (14%)

Query: 1   MTNH--FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M  +  + + D ET G      DR  Q     V +  + I +                  
Sbjct: 3   MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFV-KNNKIINTFAT---DVNPLTTVPAVI 58

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGI+  +  +      + +  ++         +   +N+ FD  +  +   R  Y  
Sbjct: 59  ENLTGISNARVRKAP-PFDDLAGTVYSLLQ---GTVFVAHNVNFDLPFINSELQRVGYPE 114

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                         +D +                   A+SF+L+DL+    I+H + H A
Sbjct: 115 LP---------IQAVDTVSLSQILL----------PTASSFRLRDLSHLLAIDHNHPHSA 155

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYR 206
            +D  AT  L   ++++   L        
Sbjct: 156 DSDAIATAHLFITLQQRLAHLPLITLQQM 184


>gi|327332247|gb|EGE73984.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL096PA3]
          Length = 584

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 18  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 72

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 73  THAMVRSAPS----LSTVLPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 122

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 123 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 171

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 172 TVDVLHGLIDRVGNLGVTTLE 192


>gi|91225444|ref|ZP_01260566.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01]
 gi|91189807|gb|EAS76080.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01]
          Length = 204

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 56/191 (29%), Gaps = 30/191 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G    L DR  +   V++    E ++S +         +         T
Sbjct: 5   NSVVVLDFETTGLSPTLGDRAIEIGAVKL-VNGEVVDSFQQLM---NPGFRVSSFIENYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT          E E      +F +  N   +  +N  FD  +      R         
Sbjct: 61  GITNNMLRSAPSCE-EVMASFSEFIAGEN---LIAHNASFDKRFLDAELERINCG----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180
                              F+   +        A S KL +L    N       H A AD
Sbjct: 112 ---------------YSGEFACSLLVARRLIQEAPSHKLGELVRYKNIDNDGVFHRALAD 156

Query: 181 VYATLALVWLI 191
              T  L  L+
Sbjct: 157 AQMTAKLWLLM 167


>gi|134295347|ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138504|gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 244

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V       +  +          +   DP A+ + G+T
Sbjct: 4   IILDTETTGLNPRSGDRLIEIGCV---ELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE + +I  F       I   +N  FD  +    F R     +    D 
Sbjct: 61  TEFLSDKPK-FAEVADQIRDFVKGAELII---HNAPFDLGFLDAEFARLGLPPFIEHCDG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLAEAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|254556626|ref|YP_003063043.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
 gi|254045553|gb|ACT62346.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
          Length = 934

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 30/209 (14%)

Query: 1   MTNH--FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M  +  + + D ET G      DR  Q     V +  + I +                  
Sbjct: 1   MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFV-KNNKIINTFAT---DVNPLTTVPAVI 56

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGI+  +  +      + +  ++         +   +N+ FD  +  +   R  Y  
Sbjct: 57  ENLTGISNARVRKAP-PFDDLAGTVYSLLQ---GTVFVAHNVNFDLPFINSELQRVGYPE 112

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                         +D +                   A+SF+L+DL+    I+H + H A
Sbjct: 113 LP---------IQAVDTVSLSQILL----------PTASSFRLRDLSHLLAIDHNHPHSA 153

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYR 206
            +D  AT  L   ++++   L        
Sbjct: 154 DSDAIATAHLFITLQQRLAHLPLITLQQM 182


>gi|206560423|ref|YP_002231187.1| putative exonuclease [Burkholderia cenocepacia J2315]
 gi|198036464|emb|CAR52360.1| putative exonuclease [Burkholderia cenocepacia J2315]
          Length = 205

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    L DR  + A + + R  E ++  +              + V +
Sbjct: 1   MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGEVVDRFQSLM---NAGRRIPSDVVAL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT           +E  +    F        +  +N  FD  + ++            
Sbjct: 57  TGITNDMIAAAP-PASEVMKEAAAFVGKH---AVVAHNAGFDKRFWQSELGLLG------ 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
                         M A +AF+   +        A S +L  L     +     AH A  
Sbjct: 107 --------------MSADHAFACTMLVARRIYPDARSHRLSSLIEMLRLPQSGRAHRAMV 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +++   + +
Sbjct: 153 DAEMAGHLWCRLQQDISRTY 172


>gi|28378418|ref|NP_785310.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
 gi|28271254|emb|CAD64158.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
          Length = 934

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 30/209 (14%)

Query: 1   MTNH--FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M  +  + + D ET G      DR  Q     V +  + I +                  
Sbjct: 1   MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFV-KNNKIINTFAT---DVNPLTTVPAVI 56

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGI+  +  +      + +  ++         +   +N+ FD  +  +   R  Y  
Sbjct: 57  ENLTGISNARVRKAP-PFDDLAGTVYSLLQ---GTVFVAHNVNFDLPFINSELQRVGYPE 112

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                         +D +                   A+SF+L+DL+    I+H + H A
Sbjct: 113 LP---------IQAVDTVSLSQILL----------PTASSFRLRDLSHLLAIDHNHPHSA 153

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYR 206
            +D  AT  L   ++++   L        
Sbjct: 154 DSDAIATAHLFITLQQRLAHLPLITLQQM 182


>gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus coahuilensis m4-4]
          Length = 194

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 28/180 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           T+ +V+ D ET G      DR  Q +   +    E +E    F      +         +
Sbjct: 3   THRYVVVDLETTGNSPKRGDRIIQLSACLI-EHGEIVEQFTSF---LNPNKTIPIFIEEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT          E + + ++    +     +   +N+ FD  + +   +   Y     
Sbjct: 59  TGITQPMVDDAPNFE-QIAPKLISMLNDS---VFVAHNVTFDLSFLQWELHAAGYK---- 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +++ +  +  S              S+KL DL+    + H   H A +D
Sbjct: 111 --TFQGPILDTVELAKICFPTSN-------------SYKLGDLSEKFNLLHERPHQADSD 155


>gi|167762354|ref|ZP_02434481.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC
           43183]
 gi|167699997|gb|EDS16576.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC
           43183]
          Length = 256

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 80/256 (31%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +     EA  +
Sbjct: 5   LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPEEASAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E +R I          + G+N+ RFD       F R   D    
Sbjct: 61  HGIYDEDVAECP-TFKEVARNIANDIE--GCDLAGFNSNRFDIPVLAEEFLRADVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ R  +           +   + ++K        G    +AH A+AD
Sbjct: 114 -----------IDMSRRKFVDVQVIFHKMEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157

Query: 181 VYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  + +  +        +  +     +  + +     M        +F   +     
Sbjct: 158 TRATYEVLMSQLDRYPELQNDVAFLSDYSSFNKNVDFAGRMVYDDKGVEVFNFGKYKGMP 217

Query: 240 IAPVA-WHPRYKDSVI 254
           +A V    P Y   ++
Sbjct: 218 VADVLKRDPGYYSWIL 233


>gi|325529244|gb|EGD06199.1| DNA polymerase III, epsilon subunit [Burkholderia sp. TJI49]
          Length = 205

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    L DR  + A + + R  + ++  +              + V +
Sbjct: 1   MQTVAVLDFETTGLSPNLGDRATEIAVILL-RDGQIVDRYQSLM---NAGRRIPSDVVAL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT              ++ + +  +      +  +N  FD  + +    R        
Sbjct: 57  TGITNDMIASAPP----AAKVMKEAAAFVGKHAVVAHNAGFDKRFWQAELGRLD------ 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                         + A +AF+   +        A S +L  LA      +   AH A  
Sbjct: 107 --------------VSAEHAFACTMLVARRIYPDARSHRLSSLAEMLQLPKSGRAHRAMV 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   ++    + +
Sbjct: 153 DAEMAGHLWCRLQHDIARTY 172


>gi|150005410|ref|YP_001300154.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482]
 gi|212694908|ref|ZP_03303036.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855]
 gi|237727134|ref|ZP_04557615.1| DNA Pol III epsilon chain [Bacteroides sp. D4]
 gi|265750418|ref|ZP_06086481.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA]
 gi|294777188|ref|ZP_06742645.1| exonuclease [Bacteroides vulgatus PC510]
 gi|319640629|ref|ZP_07995346.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A]
 gi|149933834|gb|ABR40532.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482]
 gi|212662468|gb|EEB23042.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855]
 gi|229433990|gb|EEO44067.1| DNA Pol III epsilon chain [Bacteroides dorei 5_1_36/D4]
 gi|263237314|gb|EEZ22764.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA]
 gi|294449057|gb|EFG17600.1| exonuclease [Bacteroides vulgatus PC510]
 gi|317387750|gb|EFV68612.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A]
          Length = 258

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 27/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +     ++  I
Sbjct: 5   LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPEQSSAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E ++ I +        + G+N+ RFD       F R   D    
Sbjct: 61  HGIYDADVADCP-TFKEVAKEIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+M+  +           +   + ++K        G    +AH A+AD
Sbjct: 114 -----------IDMMKRKFIDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205
             AT  ++    ++ P+  +    +
Sbjct: 158 TRATYEVLKSQLDRYPEELQNDMAF 182


>gi|227889381|ref|ZP_04007186.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850183|gb|EEJ60269.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
           ATCC 33200]
          Length = 320

 Score = 91.4 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 28/239 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +++ + D ET G     DR  +  G+RV    E + +       P  + +P      + 
Sbjct: 30  PDNYTLIDVETTGLSPYRDRITEMGGLRVRH-GEVVATFSELVKFPDSNKVP-AFITKLN 87

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI        G+   E  ++  +F    +  I+GYN               NF       
Sbjct: 88  GIDEATIEEKGLPVQEAIKKYREFI--GSDPIVGYNVNFDL----------NFVYDLAEK 135

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +       D +DV R   +F P               +L D      I     H    D 
Sbjct: 136 YHLTVLNNDYVDVYRLARSFYPQEQH----------NRLLDCMHRLDIAETQEHRGLDDC 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             T      + ++  +LF   +  R +  ++ L        +V  S  F +  ++  ++
Sbjct: 186 LDT----KKVFDEFHRLFRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRSPFAHKNVV 240


>gi|295425759|ref|ZP_06818444.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
 gi|295064567|gb|EFG55490.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
          Length = 318

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 64/205 (31%), Gaps = 27/205 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR  +   ++V R  E ++           + +P      + GIT
Sbjct: 33  YTLLDIETTGLSPYRDRVIELGAIKV-RNGEIVDEYSHLVAYDKSNCVP-AFITKLNGIT 90

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +K + +G+  AE      QF    +  IIGYN               NF       +  
Sbjct: 91  EEKIINEGIPVAEAIHDFRQFI--GDDVIIGYNVNFDL----------NFIYDLAKKYHL 138

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                + +DV+R   A+ P               +L D     GI  V  H    D   T
Sbjct: 139 PELNNNYVDVLRLARAYYPKERH----------NRLIDCMQRAGIAQVEQHRGLDDSIDT 188

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
                +  +        L     K 
Sbjct: 189 K---KVYDDFHAHFTPNLLVQAQKK 210


>gi|255690064|ref|ZP_05413739.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624341|gb|EEX47212.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 259

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 78/256 (30%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +      +  +
Sbjct: 5   LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ESKTLRINPEMHIPEASSAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E ++ I +        + G+N+ RFD       F R        
Sbjct: 61  HGIYDADVADCP-TFKEVAKSIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+      F    + +   +    S   +     N     +AH A+AD
Sbjct: 112 -----------VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCEKN---LEDAHTAEAD 157

Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  ++   +        +  +     +  + +     M    +   +F   +     
Sbjct: 158 TRATYEVLKAQLDRYDELQNDIAFLADYSSYSKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217

Query: 240 IAPVA-WHPRYKDSVI 254
           +A V    P Y   ++
Sbjct: 218 VAEVLKKDPGYYSWIL 233


>gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49]
          Length = 374

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 48/189 (25%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G      R  +   V +            +           P    +TGI+
Sbjct: 15  LVFVDLETTGGSSVEHRITEIGVVEIGPLG-----VSTWTSLVNPGQSIPPFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A  +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  EAMVRDAP-SFASLAPAL---FERLDGKLFVAHNASFDRGFLRAEFERAGLAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   +G+     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHGLVPAARHRALADADLL 165

Query: 185 LALVWLIRE 193
                 + E
Sbjct: 166 WQFWRHLHE 174


>gi|330448476|ref|ZP_08312124.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492667|dbj|GAA06621.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 214

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 54/199 (27%), Gaps = 30/199 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ VI D+ET G      DR  +   V++ +  E +   +         +         T
Sbjct: 15  DNVVILDFETTGLSPNQGDRAIEIGAVKL-QNGEVVGQFQQLM---NPGFRVSSFIEGYT 70

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+                    F    N   +  +N  FD  +                
Sbjct: 71  GISNNMLRTAP-SCDVVMNEFADFIGDAN---LVAHNASFDQRFLDAEL----------E 116

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180
             N +        M        D          A + KL  L     I H    H A AD
Sbjct: 117 QINRHYGGTFTCSMLIARRLYQD----------APNHKLGTLVDYKNIYHNGVFHRALAD 166

Query: 181 VYATLALVWLIREKKPKLF 199
              T  L  ++ +   + +
Sbjct: 167 SEMTARLWLVMLDDIKQQY 185


>gi|134093833|ref|YP_001098908.1| putative DNA polymerase/helicase [Herminiimonas arsenicoxydans]
 gi|133737736|emb|CAL60781.1| putative DNA-polymerase/ribonuclease/exonuclease [Herminiimonas
           arsenicoxydans]
          Length = 193

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 55/198 (27%), Gaps = 28/198 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              +  D ET G ++  DR  +   V V+   + I+    F                +TG
Sbjct: 5   EKLIFIDLETTGANLINDRITEIGIVTVNADGD-IDRWSSF---VNPGRPIPSFIQDLTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ +        E   +  + +        +   +N RFD  +  +   R  +       
Sbjct: 61  ISDRMVATAPTFET-LADTVRERLEDG---LFIAHNARFDYGFLHHALARAGH------- 109

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D+L  ++    F                  L  L   +G+     H A AD  
Sbjct: 110 ---ALSIDVLCTVKLSRRFF----------PEEKRHNLDTLIARHGLVPEARHRALADAD 156

Query: 183 ATLALVWLIREKKPKLFE 200
               L   +    P    
Sbjct: 157 LLWQLWEKLTASMPSEIF 174


>gi|289426266|ref|ZP_06428012.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
 gi|289153431|gb|EFD02146.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
          Length = 584

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 18  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGPIPASVQVLTGI 72

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              S  +  +     +  +  +N RFD  + +  + ++ Y        
Sbjct: 73  THAMVRSAPS----LSAILPSWLEFSRSTALVAHNARFDIGFLQRAYAQHDYPW------ 122

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 123 GDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 171

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 172 TVDVLHGLIDRVGNLGVTTLE 192


>gi|198274686|ref|ZP_03207218.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135]
 gi|198272133|gb|EDY96402.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135]
          Length = 258

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 80/243 (32%), Gaps = 29/243 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +   T     +   +      +  I
Sbjct: 5   LKNPLVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTL----RINPEMHIPETSTAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E ++ I +        I G+N+ RFD       F R   D    
Sbjct: 61  HGIHDEDVADCP-TFKEVAKDIARDIE--GADIAGFNSNRFDVPVLVEEFLRAGID---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ +  +           +   + ++K        G    +AH A+AD
Sbjct: 114 -----------IDLTKRKFVDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
             AT  ++    +  P + +   +Y +   +  + +     +    +   +F   +    
Sbjct: 158 TRATYEVLKAQLDHYPDVLQNDINYLSEYSSYSKNVDFAGRIVYDDNGVEVFNFGKYKGI 217

Query: 239 LIA 241
            ++
Sbjct: 218 PVS 220


>gi|194017045|ref|ZP_03055658.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           pumilus ATCC 7061]
 gi|194011651|gb|EDW21220.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           pumilus ATCC 7061]
          Length = 930

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 60/203 (29%), Gaps = 28/203 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             FV+ D ET G      D+  Q A V +    + +E    +                +T
Sbjct: 4   QRFVVVDIETTGNSPKKGDKIIQIAAVVI-ENGQIVERYSKY---VNPGKAIPGFIEQLT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI         V   + ++ ++             +N+ FD  +  +             
Sbjct: 60  GIQQHMVDDA-VFFEDIAQEVYDLIQ---GAYFVAHNVHFDLNFLNDELKACG------K 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
            +      D +++ R +Y                  +KL +L+    + H + H A +D 
Sbjct: 110 NELDVLAIDTVEISRILY-------------PELEGYKLTELSEELMLPHDHPHRADSDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L   +  +       +  
Sbjct: 157 EVTAMLFLTLLHQLTHTPPNVLK 179


>gi|330816255|ref|YP_004359960.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
 gi|327368648|gb|AEA60004.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
          Length = 240

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARTGDRIIEIGCVEM-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE +  I  F       I   +N  FD  +    F R           +
Sbjct: 61  TEFLSDKPK-FAEVAHAICDFVRGAELII---HNAPFDIGFIDAEFERVGLPPL---NQH 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
            +   D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 114 CDGVIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180


>gi|302345413|ref|YP_003813766.1| exonuclease [Prevotella melaninogenica ATCC 25845]
 gi|302149990|gb|ADK96252.1| exonuclease [Prevotella melaninogenica ATCC 25845]
          Length = 284

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 7/159 (4%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   +++D ET G D+  DR  Q + ++V    ++ E   +F      +     E   +
Sbjct: 5   LTKPLIVFDLETTGLDLVNDRIIQISFIKVHPDGKE-ERENIF---INPEKPIPAEVTLL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+            + ++ +   F+       GYN+ RFD       F R   D    
Sbjct: 61  TGISDADVADAP-TFKQKAKDLSDKFA--GCDFAGYNSNRFDVPMLAEEFLRAGVDFDFS 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                +++     + R   A +         +D   + K
Sbjct: 118 KCRLIDAQNIYHKMERRNLAAAYKFYCGRKMEDDFEAHK 156


>gi|254505589|ref|ZP_05117736.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16]
 gi|219551706|gb|EED28684.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16]
          Length = 204

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 30/190 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           + N  V+ D+ET G    + DR  +   V++    E +++ +         +        
Sbjct: 3   LANSVVVLDFETTGLSPNMGDRAIEIGAVKL-VNGEVVDTFQQLM---NPGFRVSSFIEG 58

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            TGIT            E   +  QF +  N   +  +N  FD  +  +   R       
Sbjct: 59  YTGITNVMLRDAP-SCDEVMAQFAQFIAGEN---LVAHNASFDKRFLDDELERVN----- 109

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178
                                F+   +     +  A S KL DL     I++    H A 
Sbjct: 110 ---------------AAYSGEFACSLLVSRRLNQDAPSHKLGDLVRFKQIDNDGVFHRAL 154

Query: 179 ADVYATLALV 188
           AD   T  L 
Sbjct: 155 ADAEMTAKLW 164


>gi|46190621|ref|ZP_00121275.2| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum DJO10A]
          Length = 211

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 30/195 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G         +   VRV      ++  +              +   +TGIT
Sbjct: 10  YVALDLETTGFYPNSCAITEIGAVRVRE-GHIVDQFQQL---VNPLRPIPRQITTLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
                       E   R   + + P        I+G+N                F D   
Sbjct: 66  DAMVADLD-PIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLR----------FLDYNT 114

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                        D M+   A  P               +L DL +  GI     H A +
Sbjct: 115 RHIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALS 164

Query: 180 DVYATLALVWLIREK 194
           D   T      +R  
Sbjct: 165 DAIQTQQCFEWMRHY 179


>gi|255019824|ref|ZP_05291900.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254970753|gb|EET28239.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 243

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 58/197 (29%), Gaps = 32/197 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G D     R  +   V  VDR+  +    + +          DPEA+ + GI
Sbjct: 4   VVLDTETTGIDPRQGHRVIEIGAVELVDREITE-GRYQQY---LNPGRSSDPEALRVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        +F+  +  F +      +  +N  FD  +      R    + +    
Sbjct: 60  RDDFLADQP----DFADIVEDFLAFLGDAELIIHNAPFDLAFLNAELERVGRPALQNPVR 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADV 181
                 D L   R  +    +               L  L    G+++     H A  D 
Sbjct: 116 ------DTLVEARRRHPGQKN--------------DLDALCRRYGVDNSRRQQHGALLDC 155

Query: 182 YATLALVWLIREKKPKL 198
                +   +   +  +
Sbjct: 156 EILAEVYLRMSGGQLGM 172


>gi|254884285|ref|ZP_05256995.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA]
 gi|254837078|gb|EET17387.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA]
          Length = 260

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 27/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +     ++  I
Sbjct: 7   LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPEQSSAI 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E ++ I +        + G+N+ RFD       F R   D    
Sbjct: 63  HGIYDADVADCP-TFKEVAKEIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+M+  +           +   + ++K        G    +AH A+AD
Sbjct: 116 -----------IDMMKRKFIDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205
             AT  ++    ++ P+  +    +
Sbjct: 160 TRATYEVLKSQLDRYPEELQNDMAF 184


>gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 461

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 6/105 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G D   D   Q   VR+      I S E F            ++  + GI
Sbjct: 272 TFVVFDSETTGLDPQKDDVVQLGAVRI-VNGRIIAS-ETFEALVNPGRPIPAQSTKVHGI 329

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
           +            +F+     F       ++  +N  FD  +   
Sbjct: 330 SDDMVAGAP----DFTVVRDNFQRYAANAVLVAHNAPFDMAFLNR 370


>gi|146299725|ref|YP_001194316.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146154143|gb|ABQ04997.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 459

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 29/189 (15%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M N  + I D ET G + +  R  + A +  D +   ++  E        +    P    
Sbjct: 1   MKNQEYAIVDIETTGGNASGSRITEIAIIIHDGK-NVLDRYETL---VNPEQDIPPSIFG 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI  +       +  + S ++ +  +     I   +N+ FD  +  +   +  +    
Sbjct: 57  LTGINNEMVANAP-IFDDISEKVLEMLTDR---IFVAHNVNFDYSFVHHQLEQAGFKWSA 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                       L  +RA                G  S+ L +L  +  I   N H A  
Sbjct: 113 KK----------LCTVRAARKI----------KPGLGSYSLGNLCNSLNISLENRHRAGG 152

Query: 180 DVYATLALV 188
           D  AT  L 
Sbjct: 153 DADATAILF 161


>gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786]
          Length = 408

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 47/195 (24%), Gaps = 29/195 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G      R  +   V V       +    +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAVEHRITEIGVVVVSA-----DHVSTWTTLVNPRQAIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                        F+      F   +  +   +N  FD  + R  F R  +         
Sbjct: 70  DDMVRGAPT----FADVASALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R                   +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRVLF----------PRESRHGLDALIARHALTPSARHRALADADLI 165

Query: 185 LALVWLIREKKPKLF 199
                 + +  P   
Sbjct: 166 WQFWQKLHDAIPGEH 180


>gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147]
          Length = 405

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 47/195 (24%), Gaps = 29/195 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G      R  +   V V       +    +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAVEHRITEIGVVVVSA-----DHVSTWTTLVNPRQAIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                        F+      F   +  +   +N  FD  + R  F R  +         
Sbjct: 70  DDMVRGAPT----FADVASALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R                   +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRVLF----------PRESRHGLDALIARHALTPSARHRALADADLI 165

Query: 185 LALVWLIREKKPKLF 199
                 + +  P   
Sbjct: 166 WQFWQKLHDAIPGEH 180


>gi|259503450|ref|ZP_05746352.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041]
 gi|259168528|gb|EEW53023.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041]
          Length = 929

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 61/178 (34%), Gaps = 28/178 (15%)

Query: 8   YDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
            D ET G  V   DR  Q   V V +  + I   E    K           V +TGI  +
Sbjct: 2   VDLETTGTSVNHGDRIIQVGCVLV-QDGQVINRFET---KINPRERIPRAVVQLTGIQER 57

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
              +  + E + +  I+   +     I   +N+ FD  +      R  Y           
Sbjct: 58  DVRKAPLFE-DVAGTIYSLLT---GTIFVAHNVNFDFPFLNAELERAGYPPLSI------ 107

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              D + + +                  A SF+L+DL  +  IEH + H A +D  AT
Sbjct: 108 KAIDTVTLSQI-------------LLPTAKSFRLRDLTSSLQIEHDHPHSAVSDAEAT 152


>gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 729

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 54/191 (28%), Gaps = 31/191 (16%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIE--STEVFFCKPADDYLPDPEAVFI 60
           ++V++D ET G   A  D     AGVR+      ++    E               ++  
Sbjct: 535 NYVVFDTETTGLSPAEGDEIVSIAGVRM-VNGRLLDGERFEQL---VNPGRTIPRSSILF 590

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI          +E     R H F       ++  +N  FD  + R    R        
Sbjct: 591 HGIHDTTVADKPRIET-VLPRFHTFV---GDSVLVAHNAAFDMKFIRLKERRCG------ 640

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                         +R         +      D      L+ +A   G+E    H A  D
Sbjct: 641 --------------VRFDNPVLDTLLLSVFLHDHTADHTLEAIAARLGVEVTAQHTAWGD 686

Query: 181 VYATLALVWLI 191
              T  +   +
Sbjct: 687 ALVTARVFACL 697


>gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 872

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 26/209 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            ++ +++D E+ G DV  D   Q A +++++  E I+S E F             +  + 
Sbjct: 494 QDNIIVFDVESTGTDVTEDEIIQIAAIKINKYGEVIDSFEKFLKNKKSVES----SFKVH 549

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G + +     G  + +  +    F       +I  +N+++D     +  YRN  D     
Sbjct: 550 GFSDEFLNEKGEDKKKVLKEFIDF---SKGAVIVGHNVQYDINILNSELYRNNLDG---- 602

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                + +D LD+ R  Y                 ++KL+ L+     ++  +HDA  D+
Sbjct: 603 -TKFKAFYDTLDIYRRFYT-------------SLPNYKLETLSKIFETKNKPSHDAMDDI 648

Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKN 209
            AT  L+   I E          +Y +K+
Sbjct: 649 LATSDLLVRAINENLIPTSMQRINYMSKH 677


>gi|49474836|ref|YP_032877.1| DNA polymerase III epsilon chain [Bartonella henselae str.
           Houston-1]
 gi|49237641|emb|CAF26821.1| DNA polymerase III epsilon chain [Bartonella henselae str.
           Houston-1]
          Length = 235

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 35/214 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61
           +I+D ET G D   DR  +   V      E ++       F         +   E V + 
Sbjct: 4   IIFDTETTGLDKEKDRIIEIGCV------EMVDRYLTGRRFHVYLNPQGVIIPDEVVAVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T ++   +    ++ +    +F    N   +  +N  FD  +      R         
Sbjct: 58  GLTNERLKNE-KSFSDIADEFLEFI---NGATMIAHNASFDIGFLNAELARANKPLISVD 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                   D L + R  +  +P+               L  L    GI++ +   H A  
Sbjct: 114 N-----ILDTLAMARRKFPMAPN--------------SLDVLCKRFGIDNSHRVFHGALL 154

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
           D      +   +   K  +  +  +     +   
Sbjct: 155 DAEILADIYIELIGGKQGVLVFGNNGSVHEESEN 188


>gi|329667930|gb|AEB93878.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii DPC
           6026]
          Length = 320

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 77/239 (32%), Gaps = 28/239 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +++ + D ET G     DR  +  G++V    E + +       P  + +P      + 
Sbjct: 30  PDNYTLIDVETTGLSPYRDRITEMGGLKVRH-GEVVATFSELVKFPDSNKVP-AFITKLN 87

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI        G+   E  ++  +F    +  I+GYN               NF       
Sbjct: 88  GIDEATIEEKGLPVQEAIKKYREFI--GSDPIVGYNVNFDL----------NFVYDLAEK 135

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +       D +DV R   +F P               +L D      I     H    D 
Sbjct: 136 YHLTVLNNDYVDVYRLARSFYPQEQH----------NRLLDCMHRLDIAETQEHRGLDDC 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             T      + ++  +LF   +  R +  ++ L        +V  S  F +  ++  ++
Sbjct: 186 LDT----KKVFDEFHRLFRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRSPFAHKNVV 240


>gi|145218937|ref|YP_001129646.1| exonuclease, RNase T and DNA polymerase III [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205101|gb|ABP36144.1| Exonuclease, RNase T and DNA polymerase III [Chlorobium
           phaeovibrioides DSM 265]
          Length = 194

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 21/200 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               + +D ET G D   +   QFAG   +     +ES E+   +P +    D EA+ +T
Sbjct: 1   MKKVLWFDLETTGIDPERNGIIQFAG-LAEIDGAVVESFEIKM-QPHEGAQIDDEALEVT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYRNF 114
           G T +         AE  R+I  F +         +       N+ FD  +   +F R  
Sbjct: 59  GFTREAIPTF-TPHAEAYRQIDDFLARHVSRFDRNDKFYPAGYNVHFDLEFLSRMFKR-- 115

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           +D Y           D   ++  +                  + +LQ      G++  NA
Sbjct: 116 FDQYGLGSFTNWRMLDPQPILNLMDY---------MGRISLPNHRLQTACDHFGVKLENA 166

Query: 175 HDAKADVYATLALVWLIREK 194
           HDA AD+ AT AL+  + E 
Sbjct: 167 HDALADITATRALMQRLLEH 186


>gi|239502706|ref|ZP_04662016.1| hypothetical protein AbauAB_10367 [Acinetobacter baumannii AB900]
          Length = 179

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 28/197 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M  + +  D ET G +V   D+  + A ++ D    K+E       +   +   DP+A  
Sbjct: 1   MIPYILGVDTETTGLEVENGDKIIEIALIKYDLDGAKLEEFVQ---RIDPERNIDPKAQA 57

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI+    +       + +  +    +  +  ++  +N  FD  +      R       
Sbjct: 58  VHGISYSDLIGCPK-FVDIAEEVASIVNHAS--LLVAHNFAFDGPFIATELKRAGMTPK- 113

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
                           +     + +  +W + D      KL DL  + G+E+    AH A
Sbjct: 114 ----------------KVSSFCTMEYGRWATFDGKYP--KLADLCFSLGVEYDASAAHAA 155

Query: 178 KADVYATLALVWLIREK 194
             DV   +   +  RE+
Sbjct: 156 SYDVDVMMQCFFKARER 172


>gi|288803395|ref|ZP_06408828.1| exonuclease [Prevotella melaninogenica D18]
 gi|288334215|gb|EFC72657.1| exonuclease [Prevotella melaninogenica D18]
          Length = 284

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 7/159 (4%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   +++D ET G D+  DR  Q + ++V    ++ E   +F      +     E   +
Sbjct: 5   LTKPLIVFDLETTGLDLVNDRIIQISFIKVHPDGKE-ERENIF---INPEKPIPAEVTLL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+            + ++ +   F+       GYN+ RFD       F R   D    
Sbjct: 61  TGISDADVADAP-TFKQKAKDLSDKFA--GCDFAGYNSNRFDVPMLAEEFLRAGVDFDFS 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                +++     + R   A +         +D   + K
Sbjct: 118 KCRLIDAQNIYHKMERRNLAAAYKFYCGRKMEDDFEAHK 156


>gi|326800820|ref|YP_004318639.1| DNA polymerase III subunit epsilon [Sphingobacterium sp. 21]
 gi|326551584|gb|ADZ79969.1| DNA polymerase III, epsilon subunit [Sphingobacterium sp. 21]
          Length = 463

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 72/276 (26%), Gaps = 28/276 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G   A     + A    D         E                  +TGI+
Sbjct: 3   YAIVDIETTGGHAAGHGITEIAICIHDGAG-ICHRYETL---VNPQAHIPLHISALTGIS 58

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE +  ++Q        I   +N+ FD  + ++      Y         
Sbjct: 59  NEMVADAP-TFAEIAATVYQLLE---GRIFVAHNVNFDYSFIKHHLAFCGYSWNA----- 109

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L  L     I   N H A  D  AT
Sbjct: 110 -----PKLCTVRLSRKVL----------PGFASYSLGKLCQQLNISITNRHRAGGDATAT 154

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             L  L+ EK P   + +    +K Q       +     +  +      +     +  V 
Sbjct: 155 GILFSLLLEKGPDAIQAMLKKASKEQALPPNLPKENFERLPQTPGVYYFKDQKGKVVYVG 214

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS 280
                K  V       +    +      +    F S
Sbjct: 215 KAKNIKKRVSAHFSGQNPNPQRQNFMRSIYDIDFVS 250


>gi|325279480|ref|YP_004252022.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324311289|gb|ADY31842.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 190

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 72/201 (35%), Gaps = 27/201 (13%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++ +D ET G     +          R  Q A +  D +   +ES +V   KP    +P 
Sbjct: 2   YLFFDTETTGLPKRWNAPVTDLENWPRLVQLAWIMYDDRGNMLESRDV-IVKPEGFTIP- 59

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           PEA  + GIT   A   G    E   +  +         +  +NI FD+      F R  
Sbjct: 60  PEASRVHGITTLVAREKGEPLQEVMEQFARKIDE--ATALVGHNISFDECIVGAEFERLR 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVN 173
                            L         S D  + P +  G  S +L +L  +  G    N
Sbjct: 118 M-----------MTTLFLKPKYCTMKLSTDYCKLPGK-KGFKSPRLAELHQVLFGSGFDN 165

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH+A ADV AT    W ++ +
Sbjct: 166 AHNALADVEATARCFWELKNR 186


>gi|307824649|ref|ZP_07654873.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
           SV96]
 gi|307734303|gb|EFO05156.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
           SV96]
          Length = 241

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 64/200 (32%), Gaps = 28/200 (14%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           TN  V+ D ET G +     R  +   V  V+R+         +      + + D  A+ 
Sbjct: 7   TNRLVVLDTETTGLNPQEGHRIIEIGCVELVNRRLTGK-RFHTY---INPERIIDDGAIE 62

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT Q         A+  +    F        +  +N  FD  +    F R   +S  
Sbjct: 63  VHGITNQFLEDKP-CFADVVKDFIAFIQDAE---LVIHNAPFDVGFINYEFSR--LNSQT 116

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177
            +  + +  +D L   R  +    +               L  L    GI+  H + H A
Sbjct: 117 GTVTDYSKVFDTLTYARKKHPGQRN--------------SLDALCKRYGIDNSHRDLHGA 162

Query: 178 KADVYATLALVWLIREKKPK 197
             D      +  L+   +  
Sbjct: 163 LLDAEILADVFLLMTGGQSS 182


>gi|121607002|ref|YP_984331.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
 gi|120595971|gb|ABM39410.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
          Length = 203

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 31/196 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G      DR  + A V +      ++  +                  
Sbjct: 1   MPLT-AVIDFETTGISPGCGDRATEVAIVLL-EGGRVVDRFQSLM---NAGVRIPSFITQ 55

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT            + ++ + Q         +  +N  FD  + +    R       
Sbjct: 56  LTGITNAMVAGAP----DAAQVMTQASRFVGDAPLVAHNAAFDRKFWQAELDRAGL---- 107

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178
                       L + R +Y               A + KL  L   +G+     AH A 
Sbjct: 108 ---AAPQPFICTLLLSRRLY-------------PQAPNHKLGSLVDFHGLPRTGQAHRAL 151

Query: 179 ADVYATLALVWLIREK 194
           AD    + L+  I+  
Sbjct: 152 ADAEMAVELLGQIQHD 167


>gi|225012865|ref|ZP_03703298.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
           MS024-2A]
 gi|225002987|gb|EEG40964.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
           MS024-2A]
          Length = 458

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 102/354 (28%), Gaps = 39/354 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + + Q + ++                P    +TGI 
Sbjct: 2   YAILDIETTGGKYDEEGITEIAIYKYNGQ-KVVDQFSSL---INPQKEIQPFVEKLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++RI +       CI+  +N  FD    +  F R  +         
Sbjct: 58  SKMLRSAPK-FYEVAKRIVELTED---CILVAHNASFDYRILQTEFRRLGFPF------- 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                           ++ L  L  + GI   + H A  D   T
Sbjct: 107 -------------ERKSICTVELSQKLLPDEPAYSLGKLVRSLGIPFSDQHRAHGDAKVT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           L L  L+ EK  +          KN  +      N+   +          ++   I  + 
Sbjct: 154 LKLFELLLEKDVQKTILKEHINTKNPNKVPSKYLNLIDKLPSEMGVYYLHNSENEIIYIG 213

Query: 245 WHPRYKDSVIGC---NLSGDMRVFQDLDSVQLA------KRLFTSHDELKGLVPVPIKEV 295
                K  V+          + +  +L  +  +        L    +E+K + P   + +
Sbjct: 214 KSNNIKKRVLSHLTGTQRKSIAIQAELSHITFSLTGGELVTLLKEQNEIKNIAPKFNRAM 273

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY 349
                P+ + ID    E + +  ++  +  E    + +   +       +   +
Sbjct: 274 RFRIFPMGIRIDNT--ETYPKLILEQVKLEEQYISVFKNQKVAKTVLFRWADDF 325


>gi|90408002|ref|ZP_01216174.1| putative DNA polymerase III [Psychromonas sp. CNPT3]
 gi|90310846|gb|EAS38959.1| putative DNA polymerase III [Psychromonas sp. CNPT3]
          Length = 210

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 39/230 (16%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  V+ D+ET G      DR  +   VR+    E  +  +            +      T
Sbjct: 7   DTIVVLDFETTGLSPNQGDRAIEIGAVRI-VNGEVTDQFQALM---NPGIRVNSFIEDYT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT           ++   +   F    N   +  +N  FD  +  N       D    +
Sbjct: 63  GITNHMLKEA-ASCSDVMAQFCDFIGDDN---LLAHNASFDKKFLDNE-----LDEISRT 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
           +                  F+   +     +  + S  L +L       E    H A  D
Sbjct: 114 YQGE---------------FTCSLLVSRRINIDSQSHSLGNLVKQLNLSEEGGFHRALFD 158

Query: 181 VYATLALVWLIREKKPKLFE---------YLYDYRNKNQLRKLIDIQNMT 221
              T  L   + +   + +                 KN++ K++    + 
Sbjct: 159 AQMTAKLWLHMLDNISQTYGIKRPLFSLMQQIANTPKNKVPKILQNYAIQ 208


>gi|308069470|ref|YP_003871075.1| DnaQ family exonuclease/DinG family helicase, [Paenibacillus
           polymyxa E681]
 gi|305858749|gb|ADM70537.1| DnaQ family exonuclease/DinG family helicase, putative
           [Paenibacillus polymyxa E681]
          Length = 955

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 27/188 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D+ET G   A D   Q     +D     I    V+           P    +TGI
Sbjct: 2   KFAVLDFETTGTQSA-DDIIQVGLAIIDHD-NSISR--VYGSYVNPGRSIPPFITGLTGI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E E    +          ++  +N+ FD  + +N   R  Y  +     
Sbjct: 58  TDDDVKDAPALE-EMMMELVPMLDD---VVLVGHNVAFDFNFLQNALDRCGYLPF----- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +D ++ ++                +S++L  ++    + H   H A +D  A
Sbjct: 109 -SGRILDTMDFLKIMF-------------PSLSSYQLGFVSSEFELAHDRPHQADSDALA 154

Query: 184 TLALVWLI 191
           T  +    
Sbjct: 155 TAEVFLKC 162


>gi|238853316|ref|ZP_04643700.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4]
 gi|300362992|ref|ZP_07059162.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           JV-V03]
 gi|238834110|gb|EEQ26363.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4]
 gi|300353042|gb|EFJ68920.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           JV-V03]
          Length = 320

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 76/239 (31%), Gaps = 28/239 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             ++ + D ET G     DR  +  G++V    E + +       P ++ +P      + 
Sbjct: 30  PENYTLIDVETTGLSPYRDRITEMGGLKVRH-GEVVATFSELVKFPDNNKVP-AFITKLN 87

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI        G+   E  ++  +F    +  I+GYN               NF       
Sbjct: 88  GIDEAAIEEKGLPVQEAIKKYREFI--GSDPIVGYNVNFDL----------NFVYDLAEK 135

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +       D +DV R   +F                 +L D      I     H    D 
Sbjct: 136 YHLTVLNNDYVDVYRLARSFY----------PQERHNRLLDCMHRMNIAENQEHRGLDDC 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             T      + ++  KLF+  +  R +  ++ L        +V  +  F +   +  ++
Sbjct: 186 LDT----KKVFDEFHKLFKQEHMLRAQEAVKTLDLTSEWPDIVKQTQAFRSPFIHKKVV 240


>gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 638

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 57/182 (31%), Gaps = 28/182 (15%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     DR    A + V    E+                P P  V + G+T ++
Sbjct: 23  VDVETSGLMARRDRVLSVAVITVGPDGEQTGEFSTL---LNPGCDPGP--VKVHGLTVER 77

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                    + + RI          ++  +N +FD  +  + F R        +W   + 
Sbjct: 78  LQGAP-TFDQVAGRIGAMLQDR---VLVAHNAQFDYDFLAHEFAR------ARTWLPVSQ 127

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
           R   L + R +             D      KL  LA   GI    AHDA  D      +
Sbjct: 128 RLCTLALNRQV-------------DPPTGDMKLGTLAAHYGIPQQRAHDALDDTRVLAGI 174

Query: 188 VW 189
           + 
Sbjct: 175 LR 176


>gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH]
          Length = 379

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 47/188 (25%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G      R  +   V V+           +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAVEHRITEIGVVVVNAN-----HVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  + +     +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAPALLERL---DGKLFVAHNASFDRGFLRAEFERAGVAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALVPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4]
 gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264]
          Length = 379

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 47/188 (25%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G      R  +   V V+           +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAVEHRITEIGVVVVNAN-----HVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  + +     +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAPALLERL---DGKLFVAHNASFDRGFLRAEFERAGVAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALVPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|260365523|ref|ZP_05778060.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030]
 gi|260877586|ref|ZP_05889941.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034]
 gi|260895401|ref|ZP_05903897.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260901674|ref|ZP_05910069.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037]
 gi|308085274|gb|EFO34969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308090931|gb|EFO40626.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034]
 gi|308108950|gb|EFO46490.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037]
 gi|308114429|gb|EFO51969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030]
          Length = 204

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 55/191 (28%), Gaps = 30/191 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G    L DR  +   V++    E ++S +         +         T
Sbjct: 5   NSVVVLDFETTGLSPTLGDRAIEIGAVKL-VDGEVVDSFQQLM---NPGFRVSSFIENYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT          E E      +F    N   +  +N  FD  +      R         
Sbjct: 61  GITNNMLRTAPSCE-EVMASFSEFIDGEN---LIAHNASFDKRFLDAELERINCG----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180
                              F+   +        A S KL +L    N       H A AD
Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDGVFHRALAD 156

Query: 181 VYATLALVWLI 191
              T  L  L+
Sbjct: 157 AQMTAKLWLLM 167


>gi|28900648|ref|NP_800303.1| hypothetical protein VPA0793 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836411|ref|ZP_01989078.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810]
 gi|28809028|dbj|BAC62136.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750313|gb|EDM61058.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810]
          Length = 214

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 55/191 (28%), Gaps = 30/191 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G    L DR  +   V++    E ++S +         +         T
Sbjct: 15  NSVVVLDFETTGLSPTLGDRAIEIGAVKL-VDGEVVDSFQQLM---NPGFRVSSFIENYT 70

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT          E E      +F    N   +  +N  FD  +      R         
Sbjct: 71  GITNNMLRTAPSCE-EVMASFSEFIDGEN---LIAHNASFDKRFLDAELERINCG----- 121

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180
                              F+   +        A S KL +L    N       H A AD
Sbjct: 122 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDGVFHRALAD 166

Query: 181 VYATLALVWLI 191
              T  L  L+
Sbjct: 167 AQMTAKLWLLM 177


>gi|219852875|ref|YP_002467307.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula
           palustris E1-9c]
 gi|219547134|gb|ACL17584.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula
           palustris E1-9c]
          Length = 193

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 61/205 (29%), Gaps = 27/205 (13%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++ +D ET G                R  +   V  D +   IE       +P    +P 
Sbjct: 2   YLFFDTETTGLPKKKHASMHRVANWPRIVELGWVLTDTKGTVIEE-AGLLVRPDGFSVP- 59

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            E+  I GIT ++A   G   +E   R           +I  + + FD         R  
Sbjct: 60  AESTAIHGITTEQATEQGSAISEVLARFLLALEQSE--LICGHQVSFDHRVVGAELIRAG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVN 173
                          D LD  R     +   +   +         L  L L         
Sbjct: 118 MP------------VDQLDKPRFCTMEASKTLNRSATGHSPHPLSLSALYLHLFDEPFAG 165

Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
           AH A AD  A  A  ++IR+ +   
Sbjct: 166 AHRALADAKACAACFFVIRDLQNSE 190


>gi|95929273|ref|ZP_01312017.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95134771|gb|EAT16426.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 217

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 55/192 (28%), Gaps = 30/192 (15%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            ++ D+ET G      DR  +   V+V+     ++  E         +         TGI
Sbjct: 10  LIVLDFETSGMAPQRGDRAIEVGAVKVN-DGRIVDHFESLM---NPGFRVSSFIEEFTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +  R    E E   +  +F        +  +N  FD  + ++ F R           
Sbjct: 66  TNDELRRAPRCE-EVMHQFSEFI---GGAPLVAHNASFDQRFLKSEFARIG--------- 112

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKADVY 182
                      M                   A + KL  L A  N       H A AD  
Sbjct: 113 -ECKLLRFGCSMLVARRLY----------PEAPNHKLATLVAYKNLPSQGVFHRALADAE 161

Query: 183 ATLALVWLIREK 194
            T  L   +  +
Sbjct: 162 MTAHLWMEMERE 173


>gi|291276271|ref|YP_003516043.1| DNA polymerase III subunit epsilon [Helicobacter mustelae 12198]
 gi|290963465|emb|CBG39295.1| Putative dna polymerase III epsilon subunit [Helicobacter mustelae
           12198]
          Length = 247

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 55/193 (28%), Gaps = 29/193 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D ET G         +   ++     E I++ E      +           +TGI 
Sbjct: 67  FCFVDIETTGSKPNHSSIIEIGAIKY-HGGEIIDTFETLVFSQS----VPENITELTGID 121

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E E  +R  +F       +   +N+ FD  +  +   R            
Sbjct: 122 AGMLADAP-SEREVLQRFRKFL---GNSVFVAHNVVFDYGFISDRLLRYNEPYLLN---- 173

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   +++ R              R   +  + L  L    GI     H A +D +  
Sbjct: 174 --PRLCTVELAR--------------RGILSARYSLGHLNAFLGIGIDKQHRALSDAFIC 217

Query: 185 LALVWLIREKKPK 197
           L +  + +   P 
Sbjct: 218 LKVFEIAQLTLPN 230


>gi|88802793|ref|ZP_01118320.1| DNA polymerase III subunit [Polaribacter irgensii 23-P]
 gi|88781651|gb|EAR12829.1| DNA polymerase III subunit [Polaribacter irgensii 23-P]
          Length = 361

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 91/334 (27%), Gaps = 33/334 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D     ++           +       V +TGI 
Sbjct: 2   YAILDIETTGGKFNEEGITEIAIYKFDGH-SVVDQFISL---VNPEKEIQQFVVRLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++RI +       C +  +N  FD       F R  YD  R +   
Sbjct: 58  NKMLRSAPK-FYEIAKRIIEITKD---CTLVAHNTTFDYRILSTEFDRLGYDFNRNT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                           S+ L  L  A GI   + H A  D  AT
Sbjct: 111 -----------------LCTVELSKQLILDQPSYSLGKLTKALGIPMTDRHRASGDALAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           + L  L+ EK           ++ +Q  +   +Q +   V               +  + 
Sbjct: 154 VQLFKLLLEKDSTKTIIQNFVKHHDQRFEKERLQKLIASVPKYLGVFYIHDKNGKVLYLG 213

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV----HLNKC 300
                   V    L  + +    L    ++     + +EL   +   ++        N  
Sbjct: 214 RGKNINAEVNKLFLK-ETKRALKLQDRAISITYEKTGNELFSRLKYYLQLETLSPKYNIK 272

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ 334
               P  +             +   E+  +L + 
Sbjct: 273 KKRKPFLHNFNNDNFIILDKGRETEEHALILIEN 306


>gi|76788222|ref|YP_329936.1| DNA polymerase III epsilon subunit family exonuclease
           [Streptococcus agalactiae A909]
 gi|77412263|ref|ZP_00788580.1| Unknown [Streptococcus agalactiae CJB111]
 gi|77414710|ref|ZP_00790841.1| Unknown [Streptococcus agalactiae 515]
 gi|76563279|gb|ABA45863.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Streptococcus agalactiae A909]
 gi|77159237|gb|EAO70417.1| Unknown [Streptococcus agalactiae 515]
 gi|77161697|gb|EAO72691.1| Unknown [Streptococcus agalactiae CJB111]
          Length = 604

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 29/228 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N F+ +D ET G +   DR  +   V      + ++S E              +   I 
Sbjct: 50  KNRFIAFDIETTGLNSQQDRIVEVGAVLF-ENGKVVDSYESL---VNAKVNISADVTRIN 105

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            IT +        E +    +  F          +  +N +FD  +  N   R       
Sbjct: 106 NITNRMIKNAP-SENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLG----- 159

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             ++      D L + R                 G  ++K   +A    +++ N+H AK+
Sbjct: 160 --YNGEIKYLDTLSLSR-------------KNVKGLRNYKQNTVAEYFNLQNKNSHRAKS 204

Query: 180 DVYAT--LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
           D      +        +  K  +      NK    +L     +  ++ 
Sbjct: 205 DAIICGNILTKLFFIIENQKSRKSFSSKNNKISPEELEVCAVIQNIIF 252


>gi|329946892|ref|ZP_08294304.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526703|gb|EGF53716.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 552

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 54/203 (26%), Gaps = 25/203 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+  R  + +                  +   +TGI
Sbjct: 21  TFVVVDLETTGGAPGAQALTEIGAVKA-RGGQVLTDFFTL---VNPGVAIPAQITMLTGI 76

Query: 64  TPQKALRDG--VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           T              E         +     ++  +N RFD  + R        +     
Sbjct: 77  TNAMVAGAPGVRTCVEAFLDWADLLA--GDVVLVAHNARFDVGHLRGAAAALGLEWPE-- 132

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L + R  +                 + KL  LA   G +    H A  D 
Sbjct: 133 ----PRVLDTLALARKAWT-----------RSEVPNHKLGTLAAFVGSQTRPTHRALDDA 177

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
            AT+ ++    E    L     +
Sbjct: 178 CATVDVLHAALEVMAPLGVTHLE 200


>gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 462

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 53/195 (27%), Gaps = 29/195 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
                 D ET G    +DR  +   V VD     +                      +TG
Sbjct: 8   PRLAFVDLETTGATAVIDRITEVGIVEVDEDG--VRHWSSL---VNPHRHIPEFIEGLTG 62

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+            E +  IHQ        I   +N RFD  + +N F R   D      
Sbjct: 63  ISNAMVADAPG-FDELAAEIHQRLE---GRIFLAHNARFDHGFLKNEFKRVGID------ 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R  +L  ++      P+  +            L  LA  + ++    H A  D  
Sbjct: 113 ----FRPTVLCTVKLSRKLYPEFAK----------HNLDTLAERHQLQVTERHRALGDAQ 158

Query: 183 ATLALVWLIREKKPK 197
                   I    P 
Sbjct: 159 LIWQFWETIHTTFPH 173


>gi|254229191|ref|ZP_04922610.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262395541|ref|YP_003287394.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
 gi|151938276|gb|EDN57115.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262339135|gb|ACY52929.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
          Length = 204

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 56/191 (29%), Gaps = 30/191 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G    L DR  +   V++    E ++S +         +         T
Sbjct: 5   NSVVVLDFETTGLSPTLGDRAIEIGAVKL-VDGEVVDSFQRLM---NPGFRVSSFIENYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT          E E      +F +  N   +  +N  FD  +      R         
Sbjct: 61  GITNNMLRSAPSCE-EVMASFSEFIAGEN---LIAHNASFDKRFLDAELERINCG----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180
                              F+   +        A S KL +L    N       H A AD
Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDGVFHRALAD 156

Query: 181 VYATLALVWLI 191
              T  L  L+
Sbjct: 157 AQMTAKLWLLM 167


>gi|82548268|gb|ABB82959.1| putative DNA polymerase type III, exonuclease domain [uncultured
           organism HF70_19B12]
          Length = 270

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 66/197 (33%), Gaps = 26/197 (13%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G +   DR  Q+A +  D     +   E+              ++ + GI+ + 
Sbjct: 12  FDTETTGLNPRKDRILQYAFIGRDVDGSSVCQVEL----IDPGIKIPEASMNVHGISNED 67

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
               G      S  I +        I+G+N   FD  +    F R        +  +  +
Sbjct: 68  VTGRG-SFGMHSNDIAELID--GAIIVGHNINAFDWRFIEFEFMRVG-----EAVPSPYA 119

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D L++ R +                     L  L    GI    AH A AD  ATL L
Sbjct: 120 LVDTLELARGLRI--------------PGRHTLGHLCKRYGIGLDRAHSADADAAATLIL 165

Query: 188 VWLIREKKPKLFEYLYD 204
           +W + E    + E   +
Sbjct: 166 LWKMIEGNQSILEDGLE 182


>gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
 gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
          Length = 1442

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/387 (13%), Positives = 112/387 (28%), Gaps = 40/387 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  + + +  ++I     FF KP  +   +     +T I
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      + E     +I + F   N  ++ +N I FD  +      +   +       
Sbjct: 465 SQEMVNNA-IDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPL----- 516

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D L + RAI  F               S +L  +     +++ +  AH A  D 
Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239
                   +++      FE +   +   +L+ L+         +          +    L
Sbjct: 562 MVLADAFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           ++       Y    I  +   + +        +    L   L++  D+    +   I+  
Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIIQRY 678

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                P +    +     + +             L+     L        +  Y      
Sbjct: 679 DFITLPSIGSQKH---LVYVKKITLENVQKAFKKLVSLALELNKIIIYSSSPYYFLKDDK 735

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382
               +Y        +          P+
Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762


>gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1]
 gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus
           radiodurans R1]
          Length = 197

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 29/192 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFC--KPADDYLPDP-EAVFIT 61
           V++D ET G   A     +   VR V  Q ++    E      +P    L  P +A  + 
Sbjct: 24  VVFDLETTGFSPASAAIVEIGAVRIVGGQIDETLKFETLVRPTRPDGSLLSIPWQAQRVH 83

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +   R   ++      +  FF   +   +  +N+ FD  + R    R         
Sbjct: 84  GISDEMVRRAPAIK----DVLPDFFDFVDGSAVVAHNVSFDGGFMRAGAERLGLSW---- 135

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKA 179
                     + + R  +                 +  L  LA   G+E      H +  
Sbjct: 136 --APERELCTMQLSRRAF-------------PRERTHNLTVLAERLGLEFAPGGRHRSYG 180

Query: 180 DVYATLALVWLI 191
           DV  T      +
Sbjct: 181 DVQVTAQAYLRL 192


>gi|323342398|ref|ZP_08082630.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463510|gb|EFY08704.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 200

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 80/217 (36%), Gaps = 32/217 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            +F + D ET GR    +   + + ++  R ++++++          D    P  V +TG
Sbjct: 13  PNFTVIDLETTGRSNKFEDITELSAIKY-RNYKQVDAFSTL---VKPDNSILPFVVELTG 68

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       ++ +  ++   F     T +I  +N+ FD            YD+Y  + 
Sbjct: 69  ITEEMVSDAPKID-QVIKQFVDFI---GTDVILGHNVMFDYGLV--------YDAYLATV 116

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D +D +R     + D          + + KL+ L     +E +  H    D  
Sbjct: 117 GLRMHN-DYVDTLRVSRLLNKD----------SKNHKLETLCAYFDVERLVGHRGSEDCL 165

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
            T  +   +++K  +          K++  K+  ++ 
Sbjct: 166 QTAEVYIKMKDKYKR-----LRQIQKDKAPKVYPVEK 197


>gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
          Length = 1442

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 114/387 (29%), Gaps = 40/387 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  + + +  ++I     FF KP  +   +     +T I
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      + E     +I + F+  N  ++ +N I FD  +      +   +       
Sbjct: 465 SQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL----- 516

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D L ++RAI  F               S +L  +     +++ +  AH A  D 
Sbjct: 517 -KNPSIDTLMILRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239
                +  +++      FE +   +   +L+ L+         +          +    L
Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           ++       Y    I  +   + +        +    L   L++  D+    +   ++  
Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                P +    +     + +             L+              +  Y      
Sbjct: 679 DFITLPSIGSQKH---LVYAQKITLENVQKAFKKLVSLALESNKPIIYSSSPYYFLKDDK 735

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382
               +Y        +          P+
Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762


>gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 1450

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 27/188 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+YD ET G +    +  +   V++  +   ++                   V +T I
Sbjct: 423 SFVVYDLETLGFNSHEGKIIEIGAVKIVEK-RIVDRFSQL---INPGQSIPQNIVDVTNI 478

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T      +  +E E      +F       I+  +N  FD  Y +    +  Y  +     
Sbjct: 479 TDSMVQNEPKLE-EVLPNFLEFIR---GSILVAHNADFDIGYLKQQCKKYGYSDF----- 529

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + + +Y                  F L  L    G+   N H A  D  A
Sbjct: 530 -NPAFIDTLQMAKDLY-------------PELKQFGLGPLNKKLGLYLENHHRAVDDCQA 575

Query: 184 TLALVWLI 191
           T  +  + 
Sbjct: 576 TGNMFLIF 583


>gi|317402511|gb|EFV83078.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54]
          Length = 240

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 52/194 (26%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I+D ET G D A   R  +   V       ++ +          D   DPEA+ + G+T
Sbjct: 4   IIFDTETTGLDPAQGHRIVEIGCV---ELVNRMATGNNLHIYLNPDRDSDPEALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE +    +F        +  +N  FD  +      +            
Sbjct: 61  TEFLSDKPR-FAEVADEFVKFIQGAE---LIAHNAAFDVKFFNAELAKTGRGPIT----- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                          A   D +             L  L    GI   H   H A  D  
Sbjct: 112 ------------EYCATVTDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQ 159

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 160 LLAEVWLAMTRGQD 173


>gi|315497200|ref|YP_004086004.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
           48]
 gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
           48]
          Length = 232

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 70/252 (27%), Gaps = 32/252 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  +   + +            F      + L +P+A+ + GIT
Sbjct: 4   IVLDTETTGIDPKKGHRLIEVGCIEI-EDLLPTGK--TFHHYFNPERLIEPDAIRVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+ ++    F        I  +N  FD  +      R   D       +
Sbjct: 61  DEMVADKPK-FADLAQAFIDFV---GDAPIIAHNASFDRGFINMELERLGLDP-----TD 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L++ R  +    +               L  L     I       H A  D  
Sbjct: 112 PDRWVDTLELARYKFPGMAN--------------SLDALCKRYNISLAERDKHGALLDAR 157

Query: 183 ATLALVWLIREKKPKLFE---YLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
               +   +   K +  +   +     +  ++R +   Q   PL        A       
Sbjct: 158 LLAGVYLELSGGKERGLDLKMHGMVSEDGTEIRVMNHGQRPRPLPSHIHPEEAEAHKAFC 217

Query: 240 IAPVAWHPRYKD 251
           +  +     +  
Sbjct: 218 LKYLKDQNMWGY 229


>gi|228474048|ref|ZP_04058789.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
 gi|228274562|gb|EEK13403.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
          Length = 257

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 27/207 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G DV+ DR  + + ++V     +    E             P +  I
Sbjct: 5   LTRPICFFDLETTGTDVSRDRIVEISILKVWPNGNR----ESKTYLVNPTIPIPPASTAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ ++  +      E +++IH      +  + GYN+ RFD         R   D    
Sbjct: 61  HGISDERVAQAP-TFKELAKQIHAMIKDSD--LAGYNSDRFDIPLLAEELLRAGVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +DL + +          ++  +       +  ++L         NAH A AD
Sbjct: 114 --------FDLKNRVTVDVQTIFHKMEQRTLSAAYKFYCKKEL--------DNAHTAAAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
             AT  ++    +             +
Sbjct: 158 TEATYEILKAQLDTYSDTLPNDIKQLS 184


>gi|261416331|ref|YP_003250014.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372787|gb|ACX75532.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325547|gb|ADL24748.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 215

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 56/192 (29%), Gaps = 18/192 (9%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVD---RQWEKIES-TEVFFCKPADDYLPDPE 56
           +   FV +D ET G     D   +   V+     +    +      F      + L   E
Sbjct: 4   LPPKFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPNMLIPAE 63

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A  +  IT +          E  ++   F       I+  +N  FD  + R  + +N   
Sbjct: 64  ATNVNHITDKMVENAP-PVGEALKQFTAF--CGPGSILLAHNANFDASFLRTAYEQNPQF 120

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +             ++D +       P+              K  ++++    +    H 
Sbjct: 121 TPGNP---------VVDSLAISKTIMPELANHKLGFMANMFMKRGEISMTI--DEEKMHR 169

Query: 177 AKADVYATLALV 188
           +  D    + + 
Sbjct: 170 SVYDCEMLMEVF 181


>gi|163756168|ref|ZP_02163283.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
 gi|161323780|gb|EDP95114.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
          Length = 454

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 66/213 (30%), Gaps = 30/213 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  R D   E ++           +    P  V +TGI 
Sbjct: 2   YAIVDIETTGGKYNEEGITEIAIYRFDGH-EVVDQFISL---VNPEREIQPFVVNLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++RI +       CII  +N  FD    +  F R  ++        
Sbjct: 58  SRMLRDAPK-FYEVAKRIVEITED---CIIVAHNASFDYRILQLEFKRLGFE-------- 105

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                           S+KL  L  A GI   + H A  D  AT
Sbjct: 106 ------------YKRKSLCTVELSKKLIPEMESYKLGKLVRALGIPMSDRHRASGDALAT 153

Query: 185 LALVWLIREKK--PKLFEYLYDYRNKNQLRKLI 215
           + L  L+ +K     + +       K ++   +
Sbjct: 154 VKLFQLLLDKDSEKNIIQQAVKTEIKKKVATRL 186


>gi|326692531|ref|ZP_08229536.1| Rad3-related DNA helicase [Leuconostoc argentinum KCTC 3773]
          Length = 801

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 65/203 (32%), Gaps = 28/203 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             FV+ D ET G+ VA   R  Q     + +    ++  E F          D     +T
Sbjct: 5   KTFVVVDLETTGQSVARGGRIIQIGMTFI-KNRRIVDHFESF---VNPGQPIDRNIQQLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I+ +        E E    +          ++  +NI FD  Y  +   R  +      
Sbjct: 61  HISEKDVRDAPYFE-EIVPVLRNMLQD---TVLIAHNINFDYPYLNDELARTGFPVL--- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N   D + + +                  A  ++L DL     I   NAH A AD 
Sbjct: 114 ---NNPAIDTVQLAQI-------------LLPTAPGYRLLDLTTFLNITLNNAHRANADA 157

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
            AT  L   + +K  +L   +  
Sbjct: 158 QATALLFLKLWQKAEQLPVIVLQ 180


>gi|157375547|ref|YP_001474147.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157317921|gb|ABV37019.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 208

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 61/202 (30%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  ++ D+ET G      DR  +   V++ +    +++ +         +         T
Sbjct: 7   NSVIVLDFETTGLSPNQGDRAIEIGAVKL-QDGIVVDTFQELM---NPGFRVSGFIEGYT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT            E   +   F    N   +  +N  FD  +          D    +
Sbjct: 63  GITNAMLNSAP-PCNEVMAQFAGFIGNDN---LVAHNASFDKRFLDAE-----LDGIGRT 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
           +  G      + + R +Y               A + KL  L     IE+    H A AD
Sbjct: 114 Y--GGEFACSMLIARRLY-------------QAAPNHKLGGLVEYKQIENDGVFHRALAD 158

Query: 181 VYATLALVWLIREKKPKLFEYL 202
              T  L   + E     ++  
Sbjct: 159 SEVTAKLWLKMLEDMQDDYQIA 180


>gi|288819191|ref|YP_003433539.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|46849522|dbj|BAD17850.1| putative DNA polymerase III epsilon subunit [Hydrogenobacter
           thermophilus]
 gi|288788591|dbj|BAI70338.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|308752773|gb|ADO46256.1| DNA polymerase III, epsilon subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 191

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 55/188 (29%), Gaps = 27/188 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + FV  D ET G D       + A VRV       +            YL     V +
Sbjct: 6   LESTFVSIDIETTGFDEESSDIIEIACVRV-EGCIITDRFSTL---VNPGYLLPDRIVKL 61

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT    +    +  E      +F    ++ I+G++                F D    
Sbjct: 62  TGITNAMIVGKPNI-YEVLPHFLRFV--GDSIIVGHHV----------EKDMAFIDKAYR 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  +   +  +       PD             + L+DLA    I +   H A  D
Sbjct: 109 VLYGKKFKHPHICTLNLARNILPDL----------KRYSLKDLADHFNIRYRRLHRALDD 158

Query: 181 VYATLALV 188
              T  L 
Sbjct: 159 AETTAYLF 166


>gi|116630207|ref|YP_815379.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           ATCC 33323]
 gi|282852827|ref|ZP_06262168.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|116095789|gb|ABJ60941.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus gasseri ATCC 33323]
 gi|282555935|gb|EFB61556.1| exonuclease [Lactobacillus gasseri 224-1]
          Length = 320

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 87/271 (32%), Gaps = 29/271 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             ++ + D ET G     DR  +  G++V    E + +       P  + +P      + 
Sbjct: 30  PENYTLIDVETTGLSPYRDRITEMGGLKVRH-GEVVATFSELVKFPDSNKVPT-FITKLN 87

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI        G+   E  ++  +F    +  I+GYN               NF       
Sbjct: 88  GIDEAAIEEKGLPVQEAIKKYREFI--GSDPIVGYNVNFDL----------NFVYDLAEK 135

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +       D +DV R   +F                 +L D      I     H    D 
Sbjct: 136 YHLTVLNNDYVDVYRLARSFY----------PQERHNRLLDCMHRMNIAENQEHRGLDDC 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALI 240
             T      + ++  KLF+  +  R +  ++ L        +V  +  F +       +I
Sbjct: 186 LDT----KKVFDEFHKLFKQEHMLRAQEAVKTLDLTSEWPDIVKQTQAFHSPFIHKKVVI 241

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSV 271
           A       Y+ + +  NL G ++    LD+ 
Sbjct: 242 AGDLDLDEYELTNVVKNLGGFIQEEVGLDTD 272


>gi|325279748|ref|YP_004252290.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324311557|gb|ADY32110.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 260

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 77/255 (30%), Gaps = 29/255 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++A DR  + + ++V    ++    E    +         EA  I
Sbjct: 5   LANPIVFFDLETTGINIAKDRIVEISVLKVYPNGKE----EQKTIRVNPGMHIPEEASAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +      +     +R +  +       + GYN+ RFD       F R        
Sbjct: 61  HGIYDEDVKDAPM-FKHIARELAHYIE--GCDLGGYNSNRFDIPLLAEEFLRA------- 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D   +   F      +   +    S               +AH A AD
Sbjct: 111 ----------EVDFDMSKRKFVDVQTIFHKMEQRTLSAAYHFYCDKC---LEDAHTAAAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV--HVSGMFGASRSNTA 238
             AT  ++    ++  +  E   D+ +K   +          +       +F   ++   
Sbjct: 158 TMATYEVLMAQLDRYGEKLENNIDFLSKFSTQNKNVDFAGFIIYDDKGVEVFNFGKNKGV 217

Query: 239 LIAPVAWHPRYKDSV 253
            +  V    +     
Sbjct: 218 PVEKVLKEQQGYYDW 232


>gi|171318244|ref|ZP_02907407.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171096588|gb|EDT41482.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 244

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V       +  +          +   DP A+ + G+T
Sbjct: 4   IILDTETTGLNPRTGDRLIEIGCV---ELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE   +I  F       I   +N  FD  +    F R     +      
Sbjct: 61  TEFLSDKPK-FAEVVDQIRDFVKDAELII---HNAPFDLGFLDAEFARLDLPPFTEHCGG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|115351214|ref|YP_773053.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115281202|gb|ABI86719.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 244

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V       +  +          +   DP A+ + G+T
Sbjct: 4   IILDTETTGLNPRTGDRLIEIGCV---ELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE   +I  F       I   +N  FD  +    F R     +      
Sbjct: 61  TEFLSDKPK-FAEVVDQIRDFVKDAELII---HNAPFDLGFLDAEFARLDLPPFTEHCGG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
 gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
          Length = 469

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 49/190 (25%), Gaps = 28/190 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D   Q   +RV    +                     +  +  I
Sbjct: 275 TYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLV--NPGRAIPASSTAVHRI 332

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +      +F S     ++  +N  FD  +      +           
Sbjct: 333 TDAMVKDAP----DMVHAGRKFHSFARDAVLVAHNAPFDLSFFHRYAPKIGMK------- 381

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKADV 181
                  +LD +                        L +LA   GIE    + H A  D 
Sbjct: 382 ---FDHPVLDTVLLSAVLF----------GITEGHTLDELAKRLGIELLDKHRHTAIGDA 428

Query: 182 YATLALVWLI 191
            AT  +   +
Sbjct: 429 IATRDIFLRM 438


>gi|78186412|ref|YP_374455.1| exonuclease [Chlorobium luteolum DSM 273]
 gi|78166314|gb|ABB23412.1| Exonuclease [Chlorobium luteolum DSM 273]
          Length = 197

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 76/211 (36%), Gaps = 21/211 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               + +D ET G D       QFAG   + +    ES E+   +P +  + + EA+ ++
Sbjct: 1   MKKVLWFDLETTGIDPDRHGIIQFAG-LAEIEGVVAESFEIKM-QPHEGAMIEDEALAVS 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQF-------FSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           G + ++        AE  + I  F       F   +       N+RFD  +   +F R  
Sbjct: 59  GFSREQIASF-TPHAEAYKAIDGFLARHVSRFERNDKFYPAGYNVRFDLDFLSRMFRR-- 115

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           YD Y           D   ++  +                  + KLQ +    G+   NA
Sbjct: 116 YDQYGLGSFINWRSLDPQPILNIMEY---------MGRLSLPNHKLQTVCEHLGVRLENA 166

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDY 205
           HDA +D+ AT  L+ L+ E            
Sbjct: 167 HDALSDIKATRELMELLMEHVSIAPFTGLRT 197


>gi|308177924|ref|YP_003917330.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307745387|emb|CBT76359.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 227

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 52/191 (27%), Gaps = 21/191 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    + V +D +   +                   A  + GI+ +K
Sbjct: 12  FDLETTGVDTNTARIVTASVVLLDAEGNVV---NNREWLVDPGVEIPEAAAAVHGISTEK 68

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
           A  +G    +    I       +    I   N  +D     +   R   + +        
Sbjct: 69  ARAEGAPAKQSVEEILNLLKFASEQAPIVAFNASYDFSVLYSEAVRYDLEPFFPGNVIDP 128

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
              D                             L       G+   NAH + AD  A + 
Sbjct: 129 FIIDKQ-----------------VDRFRKGKRTLAAACEFYGVVLENAHTSLADAVACVE 171

Query: 187 LVWLIREKKPK 197
           +   + E+ P+
Sbjct: 172 VARQLGERYPQ 182


>gi|318041263|ref|ZP_07973219.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp.
           CB0101]
          Length = 304

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 68/234 (29%), Gaps = 33/234 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVF 59
               +I D ET G D   DR  +   V  D     + S       C+          A  
Sbjct: 72  PQRLLILDTETTGLDPQRDRCIELGAVLFDVPRRSVLSQVSLLLPCEQNP-------AQA 124

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI P +  +      +  +      +  +  ++  +N  FD  +              
Sbjct: 125 VNGIDP-RLTQQPQPWQQGLQWFEALLAASD--VVVAHNAAFDRQWFG------------ 169

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                       L  +   +  S + I+WP+     ++  ++DLALA  +    AH A  
Sbjct: 170 ---------IAPLPAIDKPWLCSMEDIRWPADRHLRSNPSVRDLALAYSVPVWAAHRALT 220

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
           D      +     + +P L + L   R         +               + 
Sbjct: 221 DCIYLAQVFERCSDLEPLLQQGLEPRRLYRARLSYEERHKAREAGFRWNEPVSG 274


>gi|120599313|ref|YP_963887.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|120559406|gb|ABM25333.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
          Length = 298

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 54/185 (29%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+  D ET G +   D+  + A ++ D          VF            +   ITGI
Sbjct: 18  KFIALDAETTGLEAETDKIIEIAAIKFDLLSN---DHPVFESLINPAVKVPRKITNITGI 74

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  +      AE ++ +  F        I   N +FD  +    F             
Sbjct: 75  TNKMLVDQP-PFAELAQDLKAFI---GDLPIVAYNAKFDKGFLDAEFANVGI-------- 122

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                         +       +          ++KL  +A    I    AH AKAD  A
Sbjct: 123 -------------VLNNQYHCALNLAKAAFSLPNYKLATVAKHCNIPLDEAHRAKADAIA 169

Query: 184 TLALV 188
              + 
Sbjct: 170 AGRVF 174


>gi|256390076|ref|YP_003111640.1| exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
 gi|256356302|gb|ACU69799.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
          Length = 204

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 28/190 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G    +    + A V VD   +   S +    +P         A  + GIT
Sbjct: 12  YAVVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLL-RPQGGV----GATRVHGIT 66

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E +    +H         ++  +N+ FD  +    F R    S       
Sbjct: 67  REMVEPAPRFE-DVGMELHGLLVDR---VVVAHNLAFDAKFLVTQFARLGVHSPEI---- 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                          A     ++         S+KL D   A G+E  +AH A  D  AT
Sbjct: 119 ---------------AGGACTLRTSQAMLPGPSYKLLDCCEAVGVELTDAHSALGDALAT 163

Query: 185 LALVWLIREK 194
             L+    ++
Sbjct: 164 ARLLGFFLQR 173


>gi|126651265|ref|ZP_01723475.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. B14905]
 gi|126592103|gb|EAZ86169.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus sp. B14905]
          Length = 914

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 68/205 (33%), Gaps = 28/205 (13%)

Query: 9   DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           D ET G   A  DR  Q A V +     +IE T   F               +T IT + 
Sbjct: 2   DLETTGHSPANGDRMIQIAIVIMKDW--EIERTYTKF--INPGKAIPSFIQDLTHITNED 57

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                    E +  I++  +    C+   +N  FD  + +  F R               
Sbjct: 58  VKDS-YPFEEHADYIYELLAD---CVFVAHNADFDLSFLQAEFKRAGLP------KWQGK 107

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
           + D +++ +                  +  FKL DLA    IE  NAH A  D  AT  L
Sbjct: 108 KMDTVELAKI-------------LFPMSLGFKLGDLAADLNIELANAHRADDDARATAEL 154

Query: 188 VWLIREKKPKLFEYLYDYRNKNQLR 212
                ++   L +   +  +K   R
Sbjct: 155 FKCCWKELLNLPQLTLEQMHKRSFR 179


>gi|300934175|ref|ZP_07149431.1| putative exonuclease [Corynebacterium resistens DSM 45100]
          Length = 214

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 14/194 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G +    R  + A     R  + I            +         +TGIT 
Sbjct: 18  IIIDVETTGLEPKNHRIIEVA-TLTVRDAQPI---NSQRWLLNPEDHISEFITDLTGITN 73

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPN--------TCIIGYNNIRFDDYYSRNIFYRNFYDS 117
               +        +  I    +             I+  +N+ FD  + ++   RN   S
Sbjct: 74  AHVAKCP-TFRSVAEEIMSVLNPAGEHGSDTGQAPILVGHNVAFDYSFLQHELLRNELHS 132

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                 +G+ R  L          + +  +          ++L ++A      H   H A
Sbjct: 133 PIND-AHGSGREQLRAPYTPPLLCTAEIARTLIPRSAVGRYRLANVAAYFDAPHRPQHRA 191

Query: 178 KADVYATLALVWLI 191
             DV+AT  ++  +
Sbjct: 192 DVDVWATFDVLCGL 205


>gi|156975103|ref|YP_001446010.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116]
 gi|156526697|gb|ABU71783.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116]
          Length = 204

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 61/197 (30%), Gaps = 30/197 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G    + DR  +   V++    E ++S +         +         T
Sbjct: 5   NSVVVLDFETTGLSPNMGDRAIEIGAVKI-VDGEVVDSFQQLM---NPGFRVSSFIEGYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT          + E      +F +  N   +  +N  FD  +      R         
Sbjct: 61  GITNNMLRTAPNCD-EVMASFSEFIAGEN---LIAHNASFDKRFLDAELERIGCG----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                              F+   +        A S KL +L     IE+    H A AD
Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDGVFHRALAD 156

Query: 181 VYATLALVWLIREKKPK 197
              T  L  L+ E+  +
Sbjct: 157 AQVTAKLWLLMVEELEQ 173


>gi|301066539|ref|YP_003788562.1| Rad3-like DNA helicase [Lactobacillus casei str. Zhang]
 gi|300438946|gb|ADK18712.1| Rad3-related DNA helicase [Lactobacillus casei str. Zhang]
          Length = 931

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 28/188 (14%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  + I++          D         +TG+
Sbjct: 10  FAVVDLETTGTSVKDGDRMIQFGCALM-QHGKIIQTISQL---VNPDRSVPVAIQRLTGL 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P + +     E E ++ +HQ  +     +   +N+ FD  +    F R           
Sbjct: 66  DPNRLVAAPYFE-EIAKTLHQLLTD---TVFVAHNVNFDYPFLNAEFERVGLP------K 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D +++ +                   +SF+L DL     IEH N H A +D  +
Sbjct: 116 LQLAAIDTVELAQI-------------LLPEISSFRLPDLTSYLQIEHDNPHQADSDAIS 162

Query: 184 TLALVWLI 191
           T  L+  +
Sbjct: 163 TAKLLRQL 170


>gi|239631428|ref|ZP_04674459.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525893|gb|EEQ64894.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 931

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 28/188 (14%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  + I++          D         +TG+
Sbjct: 10  FAVVDLETTGTSVKDGDRMIQFGCALM-QHGKIIQTISQL---VNPDRSVPVAIQRLTGL 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P + +     E E ++ +HQ  +     +   +N+ FD  +    F R           
Sbjct: 66  DPNRLVAAPYFE-EIAKTLHQLLTD---TVFVAHNVNFDYPFLNAEFERVGLP------K 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D +++ +                   +SF+L DL     IEH N H A +D  +
Sbjct: 116 LQLAAIDTVELAQI-------------LLPEISSFRLPDLTSYLQIEHDNPHQADSDAIS 162

Query: 184 TLALVWLI 191
           T  L+  +
Sbjct: 163 TAKLLRQL 170


>gi|229157184|ref|ZP_04285264.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
 gi|228626248|gb|EEK82995.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
          Length = 315

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   D+  Q A V+  R  E ++    +      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQFVSY---VNPERSIPDRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E E       F    +T +I  +N  FD  + ++                
Sbjct: 66  NYRVSDARTIE-EVLPLFLAFL---HTNVIVAHNASFDMRFLKSNVNMLSLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNKVIDTVFLAKKY-------------MKHAPNHKLETLKRMLGIRLS-SHNAFDDCITC 161

Query: 185 LALVWLI 191
            A+    
Sbjct: 162 AAVYQKC 168


>gi|227535024|ref|ZP_03965073.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187339|gb|EEI67406.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 931

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 28/188 (14%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  + I++          D         +TG+
Sbjct: 10  FAVVDLETTGTSVKDGDRMIQFGCALM-QHGKIIQTISQL---VNPDRSVPVAIQRLTGL 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P + +     E E ++ +HQ  +     +   +N+ FD  +    F R           
Sbjct: 66  DPNRLVAAPYFE-EIAKTLHQLLTD---TVFVAHNVNFDYPFLNAEFERVGLP------K 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D +++ +                   +SF+L DL     IEH N H A +D  +
Sbjct: 116 LQLAAIDTVELAQI-------------LLPEISSFRLPDLTSYLQIEHDNPHQADSDAIS 162

Query: 184 TLALVWLI 191
           T  L+  +
Sbjct: 163 TAKLLRQL 170


>gi|191638483|ref|YP_001987649.1| ATP-dependent helicase DinG [Lactobacillus casei BL23]
 gi|190712785|emb|CAQ66791.1| ATP-dependent helicase DinG [Lactobacillus casei BL23]
 gi|327382518|gb|AEA53994.1| ATP-dependent helicase [Lactobacillus casei LC2W]
 gi|327385715|gb|AEA57189.1| ATP-dependent helicase [Lactobacillus casei BD-II]
          Length = 928

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 28/188 (14%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  + I++          D         +TG+
Sbjct: 7   FAVVDLETTGTSVKDGDRMIQFGCALM-QHGKIIQTISQL---VNPDRSVPVAIQRLTGL 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P + +     E E ++ +HQ  +     +   +N+ FD  +    F R           
Sbjct: 63  DPNRLVAAPYFE-EIAKTLHQLLTD---TVFVAHNVNFDYPFLNAEFERVGLP------K 112

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D +++ +                   +SF+L DL     IEH N H A +D  +
Sbjct: 113 LQLAAIDTVELAQI-------------LLPEISSFRLPDLTSYLQIEHDNPHQADSDAIS 159

Query: 184 TLALVWLI 191
           T  L+  +
Sbjct: 160 TAKLLRQL 167


>gi|119476123|ref|ZP_01616475.1| exonuclease [marine gamma proteobacterium HTCC2143]
 gi|119450750|gb|EAW31984.1| exonuclease [marine gamma proteobacterium HTCC2143]
          Length = 216

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 56/203 (27%), Gaps = 31/203 (15%)

Query: 1   MT-NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M  +  V+ D+ET G      DR  +   VR+    E ++  +                 
Sbjct: 1   MKADTVVVLDFETTGLSPDAGDRAIEIGAVRL-ESGEVVDRFQALM---NPGQRVSGFIE 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
             TGIT           A+   +   F    N   +  +N  FD  +      R      
Sbjct: 57  DHTGITNTMLANSDHS-AKVMHQFADFIEGHN---LVAHNASFDKRFLDAELAR-----I 107

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDA 177
             S+                  FS   +        A + +L  L    GI    + H A
Sbjct: 108 SRSYSGD---------------FSCSLLASRRIYQQAPNHQLGTLIKYTGIASTGDFHRA 152

Query: 178 KADVYATLALVWLIREKKPKLFE 200
             D   T+ L   +       + 
Sbjct: 153 LYDSEMTVKLWLHLLATINDRYP 175


>gi|116494972|ref|YP_806706.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334]
 gi|116105122|gb|ABJ70264.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334]
          Length = 928

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 28/188 (14%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  + I++          D         +TG+
Sbjct: 7   FAVVDLETTGTSVKDGDRMIQFGCALM-QHGKIIQTISQL---VNPDRSVPVAIQRLTGL 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P + +     E E ++ +HQ  +     +   +N+ FD  +    F R           
Sbjct: 63  DPNRLVAAPYFE-EIAKTLHQLLTD---TVFVAHNVNFDYPFLNAEFERVGLP------K 112

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D +++ +                   +SF+L DL     IEH N H A +D  +
Sbjct: 113 LQLAAIDTVELAQI-------------LLPEISSFRLPDLTSYLQIEHDNPHQADSDAIS 159

Query: 184 TLALVWLI 191
           T  L+  +
Sbjct: 160 TAKLLRQL 167


>gi|86143556|ref|ZP_01061941.1| nuclease subunit Cho of the excinuclease complex (UvrC-like
           protein) [Leeuwenhoekiella blandensis MED217]
 gi|85830003|gb|EAQ48464.1| nuclease subunit Cho of the excinuclease complex (UvrC-like
           protein) [Leeuwenhoekiella blandensis MED217]
          Length = 519

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 96/333 (28%), Gaps = 34/333 (10%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    F I D ET G  +  ++  +   + + ++ ++I                      
Sbjct: 45  MKEAKFAIIDVETTGGGIKGNKITEICIIVL-QEGKEINRFASL---VNPGREIPLYIEK 100

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI  +          E + +I         CI   +N+ FD    R  F     D  R
Sbjct: 101 LTGINDRMVEDAPY-FDELAPQIDALTQD---CIFVAHNVGFDYNVVRAEFKEAGLDFNR 156

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                       L  +R      P             S+ L +L  +  I H + H A  
Sbjct: 157 K----------RLCTVRLAKKLIPGLF----------SYSLGNLCTSINIPHYDRHRATG 196

Query: 180 DVYATLALVWLIREKKPKLFEY--LYDYRNKNQ-LRKLIDIQNMTPLVHVSGMFGASRSN 236
           D  AT+ L     +  P+        + ++K           +   L H +G++     N
Sbjct: 197 DTEATVILFQRCLDLDPEYEVIQGFLNRKSKESYFPPHFKASDFEELPHKAGVYFFKDKN 256

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV- 295
              +         K  +       + +     ++  +   L  S           I +  
Sbjct: 257 GKPLYIGKAIDIQKRVLSHFREKSNRKYELLQNTHSIDYELTGSELLALLREAELILKYY 316

Query: 296 -HLNKCPILMPIDYCKKEHFERWGIDHKRCLEN 327
              NK        Y    +  ++GI+     +N
Sbjct: 317 PKYNKAQKNPSKPYKLTSYHNKYGIEQFALHKN 349


>gi|332141113|ref|YP_004426851.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 239

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 57/195 (29%), Gaps = 25/195 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  +   V V        +   F          + EA+ + GIT
Sbjct: 4   IVLDTETTGIDPKEGHRIIEIGCVEV-VNRRLTGNH--FHVYINPGRHIEQEAIEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+ ++    F        +  +N  FD  +  + F          +   
Sbjct: 61  NEFLTDKP-TFAQVAQEFVNFIK---GAQLVIHNAPFDVGFMDHEFGMEPSTKGVITNQI 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L + R ++    +               L  L    GI+  H   H A  D  
Sbjct: 117 -CDVLDTLTLARQMHPGQKN--------------NLDALCKRYGIDNSHRTLHGALLDAE 161

Query: 183 ATLALVWLIREKKPK 197
               +  L+   + K
Sbjct: 162 ILADVYLLMTGGQTK 176


>gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010]
 gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010]
          Length = 488

 Score = 90.3 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 60/191 (31%), Gaps = 28/191 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           VI D ET G   + DR  + A + V      ++  +             P    +TGIT 
Sbjct: 12  VILDCETTGGRASRDRLTEIALIEV-EDGHVVKRWQTL---LNPLRPIPPWITRLTGITD 67

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      E +  +   F+  +  +I  +N RFD  + R  F R         +  G
Sbjct: 68  ATVADAP-TFDEIADEL---FACLDGKVIVAHNARFDYSFLRQSFQRCG-------YTLG 116

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           N     + + R                    S  L  +    G+   N H A AD    L
Sbjct: 117 NKTLCSVKLSR-------------QLFPEHRSHGLDRIIERLGLTIDNRHRAMADTEVLL 163

Query: 186 ALVWLIREKKP 196
           A    I  + P
Sbjct: 164 AFFEHISAQFP 174


>gi|146302714|ref|YP_001197305.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
 gi|146157132|gb|ABQ07986.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
          Length = 256

 Score = 90.3 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 79/255 (30%), Gaps = 29/255 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +      +D ET G D+  DR  + +  +V     K    E             P+   +
Sbjct: 5   LNKPICFFDLETTGIDIGKDRIVEISIFKVFPNGNK----ESKTWLVNPTIPIPPQTTAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +K   +    AE +  +H      +  + G+N+ RFD         R   D    
Sbjct: 61  HGITDEKVANEP-TFAELAPLVHNMIKDSD--LAGFNSDRFDIPLLAEELLRAGVDFD-- 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+  +   +   +                    L    G    NAH A+AD
Sbjct: 116 --MKNKVSVDVQTIFHKMEERTLS----------------AALKFYCGKSLDNAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239
             AT  ++    ++ P+L   +         +++ D   M    +     F   +   A 
Sbjct: 158 TMATYEILKAQLDRYPELENDMKSLSEFTTRKRIADFAGMIAFDNDDEEIFTFGKHKGAK 217

Query: 240 IAPVAW-HPRYKDSV 253
           +  V    P Y   +
Sbjct: 218 VEKVLETEPGYFSWI 232


>gi|124485750|ref|YP_001030366.1| hypothetical protein Mlab_0928 [Methanocorpusculum labreanum Z]
 gi|124363291|gb|ABN07099.1| Exonuclease, RNase T and DNA polymerase III [Methanocorpusculum
           labreanum Z]
          Length = 228

 Score = 90.3 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G +  +DR  + A ++ D+   K  S    +    +D         +TGITP
Sbjct: 2   LIVDTETTGLNPKIDRITELAAIKFDKYGNK--SVMDEYISLPNDICYPENVQEMTGITP 59

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +     G  E E +         P   ++  +N +FD  + + +  R+     R+ + NG
Sbjct: 60  EILELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRH-----RYVFPNG 114

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYAT 184
               D L V R                      +L D     G++   N+H A  DV A 
Sbjct: 115 WGVIDTLTVFRDRKPQP---------------HRLSDAISYYGLDGVKNSHRAIDDVVAL 159

Query: 185 LALVWLIREKKPK 197
            A+   + +++  
Sbjct: 160 CAVFDAMCQEQND 172


>gi|325527245|gb|EGD04625.1| DNA polymerase III subunit epsilon [Burkholderia sp. TJI49]
          Length = 243

 Score = 90.3 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V       +  +          +   DP A+ + G+T
Sbjct: 4   IILDTETTGLNPRTGDRLIEIGCV---ELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE   +I  F       I   +N  FD  +    F R     +      
Sbjct: 61  TEFLSDKPK-FAEVVDQIRDFVKGAELII---HNAPFDLGFLDAEFARLGLPPFTEHCGG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|119026003|ref|YP_909848.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765587|dbj|BAF39766.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 207

 Score = 90.3 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 66/219 (30%), Gaps = 30/219 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D+ET G   A  DR  +   V V       +  E               A ++  I
Sbjct: 6   YAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLI-----HVDRSVGASWVHHI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++ L     E   +  +    +     +   +N+ FD  +    + R           
Sbjct: 61  TARELLHAPDFEG-IAHELRDLLA---GRVFVAHNVSFDSRFLLAEYSRMGASIPVDQST 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  +L  M+   +    G             KL D     GI + +AH A +D +A
Sbjct: 117 -------MLCTMKLSRSLIGRG-------------KLADCCEYFGIANEDAHSALSDAHA 156

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
           T  L+  + E  PK   +           +        P
Sbjct: 157 TAILLGRLLEADPKWPGFQRRLDAAGAAAEQWPTFATLP 195


>gi|149927491|ref|ZP_01915745.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149823764|gb|EDM82990.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 240

 Score = 90.3 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 59/213 (27%), Gaps = 27/213 (12%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +V+ D ET G +V    R  +   + V     ++     F      +   D  A  + GI
Sbjct: 3   YVVLDTETTGLEVRQGHRIIEIGCIEV--NGRQVTDHH-FHQYINPEREVDEGAFQVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +          + ++    F        +  +N  FD  +      R          D
Sbjct: 60  SDEMLADKPK-FKQIAKDFLDFVQ---GSTLIIHNASFDIGFLDGELERLGLGKMADYVD 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181
                 D L + R ++                    L  L    G    H   H A  D 
Sbjct: 116 G---VIDSLGMAREMFPG--------------KRNNLDALCDRLGVNNAHRQLHGALLDS 158

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
                +   +   +  L   L    + + + ++
Sbjct: 159 QILAEVYLAMTRGQDSLVIDLNAQHDDDGVERI 191


>gi|291531228|emb|CBK96813.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium siraeum 70/3]
          Length = 458

 Score = 90.3 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 24/198 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY---LPDPEAV 58
           ++ FV+YD ET G +       Q   V+V      ++ ++ F       Y          
Sbjct: 268 SDTFVVYDLETTGLNSEFHAVIQIGAVKVVDG--VVDESQTFEELVNPKYSKVSVSDNIT 325

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            ITGIT ++A     V  E      +F    +  + G+NN  FD  +       +     
Sbjct: 326 KITGITDEEAKNARQVW-EVIPEFVKFI--GDDTLAGFNNAAFDSKFLERAGRHSNIII- 381

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                  N ++D++   + I              D      L + A   GI++  AH A 
Sbjct: 382 ------TNKQFDIMKYAKRI----KKKCNLEINGDE-----LNNYAEYFGIKNEKAHTAL 426

Query: 179 ADVYATLALVWLIREKKP 196
           +D   T  +   +R+   
Sbjct: 427 SDAITTAKVYIKLRQLDE 444


>gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
 gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
          Length = 315

 Score = 90.3 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 64/209 (30%), Gaps = 32/209 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   DR  Q A VR  R  E  +    F      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDRIIQVAAVRY-RNHELADQFVSF---VNPERFIPNRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +  E       F        I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTI-QEVLPLFLAFL---GEDTIVAHNASFDMRFLKSNANMLRLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI  +++H+A  D    
Sbjct: 116 KNIVIDTVFLAKRY-------------MKHAPNHKLETLKRMLGI-CLSSHNALDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            A+       + +          K  + +
Sbjct: 162 AAVYQKCAAIQEEG----QKKTKKETVEE 186


>gi|325478691|gb|EGC81802.1| CRISPR-associated endoribonuclease Cas2 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 292

 Score = 89.9 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 26/192 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V+ D ET G D    +  +   V  + Q E ++  E    +   +     E + +TG
Sbjct: 123 KKYVVVDIETSGLDYEKHKIIEIGAVLTNSQGEVLDKFESLIRQ---EIKLSNEIIKLTG 179

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    +  G    +  + +  F        +   N  FD  +      +N       + 
Sbjct: 180 ITDNDLINGG----DEKKVLEDFVCFIKNHPLVGYNFNFDMKFLNYNLEKNSLKEITNT- 234

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 +DL   ++    F               ++KL+ +    GI+    H A AD  
Sbjct: 235 -----TYDLKTYVKREKMFL-------------KNYKLETVLKEYGIKKKVDHRALADAL 276

Query: 183 ATLALVWLIREK 194
            T+ L   + E 
Sbjct: 277 VTVNLASQVNEF 288


>gi|325298421|ref|YP_004258338.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324317974|gb|ADY35865.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 258

 Score = 89.9 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 79/257 (30%), Gaps = 29/257 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   +++     +    E    +   +      +  I
Sbjct: 5   LKNPLVFFDLETTGTNINTDRIVEICYLKIYPNGNE----ESKTMRINPEMHIPETSTAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          + ++ + +        I G+N+ RFD       F R   D    
Sbjct: 61  HGIHDEDVADCP-TFKQIAKELAKSIE--GADIAGFNSNRFDVPVLVEEFLRAGID---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ +  +           +   + ++K        G    +AH A+AD
Sbjct: 114 -----------IDLSKRKFIDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 157

Query: 181 VYATLALVWLIREK--KPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
             AT  ++    ++       +  +        + +     +    +   +F   +    
Sbjct: 158 TRATYEVLKAQLDRYPDTLQNDVAFLSEYSTYSKNVDFAGRIVYDDNGVEVFNFGKYKGM 217

Query: 239 LIAPVAWHPRYKDSVIG 255
            +A V    +     I 
Sbjct: 218 PVAEVLKRDQGYFGWIM 234


>gi|170017004|ref|YP_001727923.1| Rad3-related DNA helicase [Leuconostoc citreum KM20]
 gi|169803861|gb|ACA82479.1| Rad3-related DNA helicase [Leuconostoc citreum KM20]
          Length = 801

 Score = 89.9 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 28/203 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             FV+ D ET G+ VA   R  Q     + +    I+  E F          D     +T
Sbjct: 5   KTFVVVDLETTGQSVAKGGRIIQIGMTFI-KNRRIIDHFESF---VNPAQPIDRNIQQLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I+ ++       E E +  I    +     +I  +N+ FD  Y  + F R  +      
Sbjct: 61  HISQKEVKNAPYFE-EIAPVIQNLLTD---TVIIAHNVNFDYPYLNDEFARTGFPEL--- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N+  D + + +                  A  ++L DL     I   NAH A AD 
Sbjct: 114 ---TNAAIDTVQLAQI-------------LLPTAPGYRLLDLTTYLNITLNNAHRANADA 157

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
           +AT  L   + ++  +L   +  
Sbjct: 158 HATALLFLSLWQRAEQLPTLVLQ 180


>gi|89891036|ref|ZP_01202544.1| putative DNA polymerase III, epsilon subunit [Flavobacteria
           bacterium BBFL7]
 gi|89516680|gb|EAS19339.1| putative DNA  polymerase III, epsilon subunit [Flavobacteria
           bacterium BBFL7]
          Length = 255

 Score = 89.9 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 75/251 (29%), Gaps = 29/251 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D ET G +++ DR  + A  +V     +      +  +             + GIT
Sbjct: 9   ICFFDLETTGVNISKDRIVEIAIHKVLPDGTEK----TYTYRVNPTVPIPAATTAVHGIT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                 +     E +  IH      +  + G+N+ RFD         R   D        
Sbjct: 65  DDMVKDEP-TFKELAHEIHNIIKDSD--LAGFNSNRFDIPLLAEEMLRAGVDFE----MG 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D+ ++   +   +                 +         +  NAH A+AD  AT
Sbjct: 118 NRNAIDVQNIFHKMEQRTL----------------VAAYKFYCDKDLTNAHSAEADTIAT 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTALIAPV 243
             ++    ++ P L   +      +  RK +D   M          F   +     +  V
Sbjct: 162 YEVLKGQLDRYPDLENDMNALAEFSTRRKPVDFAGMLAFNDQGEECFNFGKHKGKKVVDV 221

Query: 244 AW-HPRYKDSV 253
               P Y   +
Sbjct: 222 LEKEPGYYSWI 232


>gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 244

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V       +  +          +   DP A+ + G+T
Sbjct: 4   IILDTETTGLNPRTGDRLIEIGCV---ELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE   +I  F       I   +N  FD  +    F R     +      
Sbjct: 61  TEFLRDKPK-FAEVVDQIRDFVKGAELII---HNAPFDLGFLDAEFARLDLPPFTEHCGG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|163802995|ref|ZP_02196881.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4]
 gi|159173169|gb|EDP57998.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4]
          Length = 209

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 60/197 (30%), Gaps = 30/197 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G    + DR  +   V++    E ++S +         +         T
Sbjct: 5   NSVVVLDFETTGLSPNMGDRAIEIGAVKI-VDGEVVDSFQQLM---NPGFRVSSFIEGYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT            E      +F +  N   +  +N  FD  +      R         
Sbjct: 61  GITNNMLRTAP-SCDEVMASFSEFIAGEN---LIAHNASFDKRFLDAELERINLG----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                              F+   +        A S KL +L     IE+    H A AD
Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDGVFHRALAD 156

Query: 181 VYATLALVWLIREKKPK 197
              T  L  L+ E+  +
Sbjct: 157 AQVTARLWLLMVEELEQ 173


>gi|332829625|gb|EGK02271.1| hypothetical protein HMPREF9455_01541 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 256

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G D   DR  + + ++V    +     EV   +   +    P A  +
Sbjct: 5   LKNPLVFFDLETTGTDTVKDRIVEISYLKVYPNGK----QEVKTKRLNPEMPIPPGATAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +          + ++ +          + G+N+ RFD       F R   D    
Sbjct: 61  HGISDEDVKDCP-TFKQIAKSLADQME--GCDLAGFNSSRFDIPLLAEEFLRAGVDIDFS 117

Query: 121 SWD 123
              
Sbjct: 118 KRK 120


>gi|113868435|ref|YP_726924.1| DNA polymerase III subunit epsilon [Ralstonia eutropha H16]
 gi|113527211|emb|CAJ93556.1| DNA polymerase III epsilon subunit [Ralstonia eutropha H16]
          Length = 246

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 57/200 (28%), Gaps = 27/200 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G   A  DR  +   V +            F+  P  D   D  A+ + GIT
Sbjct: 7   IVLDTETTGLSAATGDRLIEIGCVEL-MNRRLTGRHLHFYVNPERD--IDEGAIAVHGIT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    I +F       I   +N  FD  +    F       +R    N
Sbjct: 64  VEFLADKPR-FAEVVNDIREFIQDAELII---HNAPFDLGFLDMEFQLLGLPPFRQHAGN 119

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                 ++D +R                       L  L    GI   H   H A  D  
Sbjct: 120 ------VIDTLREARQMF-----------PGKRNSLDALCDRLGISNAHRTLHGALLDAE 162

Query: 183 ATLALVWLIREKKPKLFEYL 202
               +   +   +  L   +
Sbjct: 163 LLAEVYLAMTRGQDSLVIDM 182


>gi|241761459|ref|ZP_04759547.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374366|gb|EER63863.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 234

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G      DR  +   V       K+E+   F C    +   D  A  I G++
Sbjct: 4   IVFDTETTGLSPINGDRLVEIGCV---ELINKVETGNSFHCYFNPERPMDAVAESIHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    F+ +  +  S      +  +N  FD  +      +    +   +   
Sbjct: 61  DAFLADKPL----FADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRM- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L + R  +  +                 L  L    GI+  H   H A  D  
Sbjct: 116 ----VDTLAIARGKHPGA--------------KHTLDALCTRYGIDRSHRVKHGALLDAE 157

Query: 183 ATLALV 188
               L 
Sbjct: 158 LLAQLY 163


>gi|83645320|ref|YP_433755.1| DNA polymerase III subunit epsilon [Hahella chejuensis KCTC 2396]
 gi|83633363|gb|ABC29330.1| DNA polymerase III, epsilon subunit [Hahella chejuensis KCTC 2396]
          Length = 240

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 70/227 (30%), Gaps = 32/227 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G + +   R  +   V      E I+ +     +      +   D  A  + 
Sbjct: 4   IVLDTETTGLETSQGHRIIEIGCV------EVIDRSLTGNHYHVYINPEREVDAGAFEVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +          + ++    F S      +  +N  FD  +    F  +   +    
Sbjct: 58  GISNEFLADKPK-FKQVAQDFLDFISGAE---LVIHNAAFDVGFIDYEF--SLLGAPFGK 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179
             +  S  D L + R  +    +               L  L    GI+  H + H A  
Sbjct: 112 VSDYCSVVDTLMMARKKHPGQKN--------------NLDALCKRYGIDNSHRDLHGALL 157

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
           D      +   +   +  L  +  D   + +  ++  I    P + V
Sbjct: 158 DSEILADVYLAMTGGQTSLSLHSEDGGTEEEASEVRRINTQRPSLRV 204


>gi|56550935|ref|YP_161774.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56542509|gb|AAV88663.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 234

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G      DR  +   V       K+E+   F C    +   D  A  I G++
Sbjct: 4   IVFDTETTGLSPINGDRLVEIGCV---ELINKVETGNSFHCYFNPERPMDAVAESIHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    F+ +  +  S      +  +N  FD  +      +    +   +   
Sbjct: 61  DAFLADKPL----FADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRM- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L + R  +  +                 L  L    GI+  H   H A  D  
Sbjct: 116 ----VDTLAIARGKHPGA--------------KHTLDALCTRYGIDRSHRVKHGALLDAE 157

Query: 183 ATLALV 188
               L 
Sbjct: 158 LLAQLY 163


>gi|332653929|ref|ZP_08419673.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
           bacterium D16]
 gi|332517015|gb|EGJ46620.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
           bacterium D16]
          Length = 236

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 29/215 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDPEAV 58
              V++D ET G D   D+  + A +RV+R            + F   P  + LP+   V
Sbjct: 12  KALVVFDTETSGLDFDNDQIIELAALRVERTATGGLRIAGKMDTFIKLPEGETLPE-NIV 70

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++   +GV  A+ + +I +        ++  +N +FD           F    
Sbjct: 71  SLTGITDERLQTEGVQPAKAASQIAKLM-QNGPTLMIAHNAQFDA---------CFLRGL 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                 G  R D LD +           +  +            +A     +  N+H A 
Sbjct: 121 LRGQKVG--RIDWLDSLTVYKDRRAYPHKLANAI----------IAYDLTGKVQNSHRAI 168

Query: 179 ADVYATLALVWLIR--EKKPKLFEYLYDYRNKNQL 211
            DV A   ++  +    +    +  L+ Y  K  +
Sbjct: 169 DDVLALFEVLKAMDDEREDLGSYVNLFGYNPKYGV 203


>gi|291524324|emb|CBK89911.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium rectale DSM 17629]
          Length = 260

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 28/189 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            ++ + D E  G     D+  +    RV R  E +++                    +TG
Sbjct: 23  KNYTVIDLEMTGLSAKNDKIIEIGAARV-RGGEIVDTISTL---VNPKQHIPQRVQELTG 78

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT           A+    +    +     II   N+ FD  + +     +         
Sbjct: 79  ITDSDVENA----ADMDVAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVNH-------KR 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               + +D L + R                    S KL+DL    G+   NAH A  D  
Sbjct: 128 TLSLNAYDTLKIARKC-------------LPAEQSKKLEDLCEYFGVSRENAHRALDDAI 174

Query: 183 ATLALVWLI 191
            T  +   +
Sbjct: 175 ETKQIFEKL 183


>gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
 gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
          Length = 1446

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 60/197 (30%), Gaps = 28/197 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G     D   +F GV++ +  E++   ++F                +T I
Sbjct: 396 TFVVFDLETTGLSNTRDEIIEFGGVKI-KNREEVGRLQMF---INPKRTIPAHISNLTHI 451

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +E +    + +F       I+  +N  FD  +      +   D       
Sbjct: 452 TQNDVDCAKPIE-DALDELLEFI---GDSILVAHNATFDVGFMNAACRKTGRDEL----- 502

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181
             N   D L +  A               D    F L  +        +   AH A  D 
Sbjct: 503 -TNPVIDTLPLSYA------------MLPDEQKRFNLGSVCRHYRVSYDGEGAHRADYDA 549

Query: 182 YATLALVWLIREKKPKL 198
                +++ +  +    
Sbjct: 550 DVLSQVMYNMMNQLGHD 566


>gi|56460794|ref|YP_156075.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR]
 gi|56179804|gb|AAV82526.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR]
          Length = 235

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 28/195 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G D A   R  +   V  ++R+     +   F      + + + EA+ + GI
Sbjct: 4   VVLDTETTGIDPAKGHRIIEIGCVELINRKL----TGNHFHVYINPERVVEQEAIEVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        V    F++ +  F        +  +N  FD  +    F R    +   +  
Sbjct: 60  TNDFLTDKPV----FAQVVQDFIEFIKGSQLVIHNAPFDVGFMDAEFSR-IRPAVGLTN- 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADV 181
           +  S  D L + R +     +               L  L  A  +++     H A  D 
Sbjct: 114 DFCSVLDTLQLAREMRPGQRN--------------SLDALCRAYDVDNSARELHGALLDA 159

Query: 182 YATLALVWLIREKKP 196
                +  ++   + 
Sbjct: 160 EILADVYLMMTGGQT 174


>gi|255530778|ref|YP_003091150.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
 gi|255343762|gb|ACU03088.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
          Length = 1476

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 70/205 (34%), Gaps = 30/205 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D     I   + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDELGNMI-EHQDYLVKPDGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A   G+  AE   + +   S      +   NI FD        YR  
Sbjct: 61  -DAERIHGISTELATEQGIELAEVLEKFNIALSKAK--FVVGQNIGFDVNIMGCELYRLG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            +          S    + V+      + + ++ P    G   FKL +L        G  
Sbjct: 118 VE----------SPMAQMPVLDTCTEITAELLKLPGGRGGK--FKLPNLTELHQYLFGEP 165

Query: 171 HVNAHDAKADVYATLALVWLIREKK 195
              AH+A ADV AT      + +  
Sbjct: 166 FAEAHNATADVEATTRCFLQLIKID 190


>gi|313206116|ref|YP_004045293.1| DNA polymerase iii, alpha subunit [Riemerella anatipestifer DSM
           15868]
 gi|312445432|gb|ADQ81787.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer DSM
           15868]
 gi|315022923|gb|EFT35946.1| DNA polymerase III alpha subunit [Riemerella anatipestifer RA-YM]
 gi|325336439|gb|ADZ12713.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer RA-GD]
          Length = 1550

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 120/397 (30%), Gaps = 41/397 (10%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D +   +E+ + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDEEGNLVENQD-YIIKPEGYDIPF 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             A  I GI+ + A   G    E      +      T I+  +NI FD       FYR  
Sbjct: 61  -NATRIHGISTKMAHEQGRDLVEILEEFKEVLKK--TKIVAGHNIEFDYNIVGAEFYRKS 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +       N   +    D M     +   G     +       +L +     G +   A
Sbjct: 118 IE-------NVLEKIPSADTMALGTDYCQLGGGRNGKYKPPKLEELYE--KLYGEKFDEA 168

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           H+A ADV AT  + + +        E L     + ++ +      + P   V        
Sbjct: 169 HNAAADVNATAQVFFEMMRVGIIPAETLKISEEQLKVYQENHPSPIRPFAIVIRRQVEDF 228

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
           +                        GD+   +  D          S  +    +   I +
Sbjct: 229 NKKKK----------------RTDFGDISEIELGDYFNFHNHSIFSSLQSTTSIGDLIDK 272

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
              N+ P +  +D        ++  D ++    +    Q+     +        +  ++ 
Sbjct: 273 AKSNQFPAVGMVDLGNMMGAFKFVSDVEKYNSGVKKAHQEYLANKQKAEEEGADFNENAP 332

Query: 355 DVDSQLYDG--FFADVDRQIMDRILRTAPEQLSTLNL 389
           +    +      F   DR    +  +  P++ + + L
Sbjct: 333 ESKELMAVLGCEFYISDRPEQKQFTKDDPDRRTNVVL 369


>gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
 gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
          Length = 862

 Score = 89.9 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 73/194 (37%), Gaps = 25/194 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            ++ +++D E+ G DV  D   Q A ++V++  +  E  E F             +  + 
Sbjct: 494 KDNIIVFDVESTGVDVTEDEIIQIAAIKVNKNGQVTEKFERFLKNNKSVK----NSEHVH 549

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G + +   ++G  +    +   +F       +I  +N+++D     +   R      ++ 
Sbjct: 550 GFSDEFLKKNGEDKNTVLKEFVKFSEDS---VIVGHNVQYDINILTSELQRAGLGEPKFK 606

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +D LD+ R  +                 + KL+ L+     E+  +HDA  D+
Sbjct: 607 AF-----YDTLDIYRRFH-------------PNLRNHKLETLSHIFETENKPSHDAMDDI 648

Query: 182 YATLALVWLIREKK 195
            AT  ++    +  
Sbjct: 649 QATKDILVRAIKDD 662


>gi|269796146|ref|YP_003315601.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
 gi|269098331|gb|ACZ22767.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
          Length = 241

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 66/200 (33%), Gaps = 19/200 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV+ DR    A VR       + +TEV            PEA  I GIT + 
Sbjct: 11  FDTETTGVDVSEDRIVSAALVR-----RHVGTTEVRTWLLDPGVPIPPEASSIHGITTEV 65

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G   A     I +  +        +   N  FD    +    R            G
Sbjct: 66  ARAEGQDPAGALDEIAKEIAAALSEGIPVVAFNATFDLCILQAELRRYGL--QTLEERTG 123

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYAT 184
                ++D +    A                  KL DL    GIE     H A  DV AT
Sbjct: 124 AEVAPVIDPLVLDRAV---------DRYRRGKRKLVDLCGVYGIEGDGELHTADVDVLAT 174

Query: 185 LALVWLIREKKPKLFEYLYD 204
           L ++  +  + P++      
Sbjct: 175 LDVLGAMVTQYPEIGARTLQ 194


>gi|182680101|ref|YP_001834247.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 236

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 59/208 (28%), Gaps = 29/208 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D A   R  +   + +      I + ++F            +AV + GIT
Sbjct: 4   IVLDTETTGLDPAEGHRIIEIGCIEI---LHTIPTGQIFHVYIDPQRDIPEDAVRVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V  A+ +     F        +  +N  FD  +          +       +
Sbjct: 61  AEFLAGKPV-FADIASEFLAFIGDAK---LVAHNAAFDMRFLNAELGLLGLEPI-----D 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  +              S  L  L    GI++     H A  D  
Sbjct: 112 SERVVDTLALARRRHPGA--------------SNSLDALCNRYGIDNTRRTKHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210
               +   +   +     +      +  
Sbjct: 158 ILADVYAELLGGRQAALTFETATALRQD 185


>gi|153833352|ref|ZP_01986019.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
 gi|148870361|gb|EDL69287.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
          Length = 204

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 60/197 (30%), Gaps = 30/197 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G    + DR  +   V++    E ++S +         +         T
Sbjct: 5   NSVVVLDFETTGLSPNMGDRAIEIGAVKI-VDGEVVDSFQQLM---NPGFRVSSFIEGYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT            E      +F +  N   +  +N  FD  +      R         
Sbjct: 61  GITNNMLRTAP-SCDEVMASFSEFIAGEN---LIAHNASFDKRFLDTELERIDCG----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                              F+   +        A S KL +L     IE+    H A AD
Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDGVFHRALAD 156

Query: 181 VYATLALVWLIREKKPK 197
              T  L  L+ E+  +
Sbjct: 157 AQVTAKLWLLMVEELEQ 173


>gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1]
 gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 200

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 58/209 (27%), Gaps = 33/209 (15%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEK-IES-TEVFFCKPADDYLPDPEAV 58
           +  F + D ET G       R  + A VR+D      ++                  +A 
Sbjct: 9   SYKFTVVDTETTGLSPYKGARLVEIAAVRLDEGLNIRLDRGFSTL---INPKKPIPFQAY 65

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I  I+ +       +E E      ++       +   +N  FD  +    + +   +  
Sbjct: 66  KIHKISDEMVKDAPTIE-EVLPHFSKYVEN---TVFVAHNAPFDFKFIDYFYKKTGMNCP 121

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA---- 174
                   +  D L + R                 G  S+ L  L     I+        
Sbjct: 122 LI------AVIDTLKLSR-------------RIIPGLKSYSLDSLIQHFNIKLKINGSYR 162

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLY 203
           H A  D   T  +   + E + +    L 
Sbjct: 163 HRAIYDALHTAIIFKKLIEIESQRKGSLL 191


>gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
          Length = 1442

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 113/387 (29%), Gaps = 40/387 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  + + +  ++I     FF KP  +   +     +T I
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      + E     +I + F+  N  ++ +N I FD  +      +   +       
Sbjct: 465 SQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL----- 516

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D L + RAI  F               S +L  +     +++ +  AH A  D 
Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239
                +  +++      FE +   +   +L+ L+         +          +    L
Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           ++       Y    I  +   + +        +    L   L++  D+    +   ++  
Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                P +    +     + +             L+              +  Y      
Sbjct: 679 DFITLPSIGSQKH---LVYAQKITLENVQKAFKKLVSLALESNKPIIYSSSPYYFLKDDK 735

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382
               +Y        +          P+
Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762


>gi|162148736|ref|YP_001603197.1| DNA polymerase III epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545498|ref|YP_002277727.1| DNA polymerase III subunit epsilon [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787313|emb|CAP56907.1| putative DNA polymerase III epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533175|gb|ACI53112.1| DNA polymerase III, epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 226

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 54/194 (27%), Gaps = 29/194 (14%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
               +++D ET G D A  DR  + A + +            F      D     EA  +
Sbjct: 1   MKRAILFDTETTGLDPARGDRVIEIAALELVGDL-PTGRH--FHVLIHPDRDIPEEASRV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G T            E +     F    +   +  +N RFD  +      R    +   
Sbjct: 58  HGFTLADLEGKPRFH-EIADDFLAFIGQDD---LIAHNARFDFGFLNAELKRAERPALSL 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAK 178
                +   D LD+ R  Y   P+               L  L     I+      H+A 
Sbjct: 114 -----DRMVDTLDIARDRYPGLPN--------------SLDALCRRFSIDLSARTTHNAL 154

Query: 179 ADVYATLALVWLIR 192
            D      +   + 
Sbjct: 155 LDCRLLAEVYLELM 168


>gi|56692916|ref|YP_164280.1| exonuclease [Pseudomonas phage F116]
 gi|48527502|gb|AAT45877.1| exonuclease [Pseudomonas phage F116]
          Length = 201

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 30/201 (14%)

Query: 7   IYDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           I+D+ET G         D       + A +  D     I+  E    +P    +  PE  
Sbjct: 5   IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEA-IVRPNGWEI-TPEMT 62

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GI+ ++A+  G+ EAE                   +NI FDD  +R    R   +  
Sbjct: 63  AIHGISHEQAMDVGISEAEALEGFLAI--NGRAARRAAHNISFDDRITRIALMRYQDEDA 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV----NA 174
             ++     ++      RA  A                  KL  LA A           A
Sbjct: 121 ANAFKESGEKFCTCYRSRAQVAL--------------PRNKLPTLAEAYKHFTGEDLVEA 166

Query: 175 HDAKADVYATLALVWLIREKK 195
           H A  D  A   + + ++   
Sbjct: 167 HRAMPDAQACARIYFALQGVD 187


>gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 334

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 72/281 (25%), Gaps = 35/281 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D Q    +              P P  V+I G+T
Sbjct: 31  YAVVDVETTGL-AREDRIVSAAVYRLDAQGNVEDHWYTL---VNPQRDPGP--VWIHGLT 84

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + +       +     ++  +N  FD       + R            
Sbjct: 85  SDMLQDAPL-FKDIAGEFAGRLADR---VLVAHNAIFDWQMIAREYARA----------- 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   +    +             +    + KL+ LA   G+    AH A  D    
Sbjct: 130 --------EETAPVRQRLCTIALSKELNLPLPNHKLESLAAHFGVVQQRAHHALDDARVL 181

Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
                       +      L + R             +TP +     +       +   P
Sbjct: 182 AEAFRPSLHAAARDGVRLPLLECR----PLTEWSDSAVTPRIGYQSSYRGGGWRPSRKRP 237

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283
              HP       G  L   MR+    D+    + L     E
Sbjct: 238 ACPHPNPGRFEDGKPLKQGMRIAFSGDTSVERELLEDRAVE 278


>gi|87120665|ref|ZP_01076558.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
 gi|86163893|gb|EAQ65165.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
          Length = 203

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 56/202 (27%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  VI D+ET G      DR  +   V++    E +   +         +         T
Sbjct: 4   DSLVILDFETTGLSPDQGDRAIEIGAVKL-EAGEVVAEFQALM---NPGFSVTSFIEGYT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+     +      E      +F +  N   +  +N  FD  +    F R         
Sbjct: 60  GISNAMLAQAD-SCREVMESFAEFIADNN---LIAHNASFDRRFLDAEFSR--------- 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180
             N   + D    +        D          A S  L  L     +    + H A  D
Sbjct: 107 -FNHVYQGDFSCSLLLSRRIFQD----------APSHSLGALVNYINLSGTGDFHRALYD 155

Query: 181 VYATLALVWLIREKKPKLFEYL 202
              T  L   + +   + +   
Sbjct: 156 AQMTAKLWMAMLDNIGERYGLF 177


>gi|254517741|ref|ZP_05129797.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
           sp. 7_2_43FAA]
 gi|226911490|gb|EEH96691.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
           sp. 7_2_43FAA]
          Length = 188

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 27/190 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N ++ +D ET G     D+  +   V      E I+           + +    A  +
Sbjct: 24  LKNRYIAFDVETTGLSPINDKIIEVGAVLF-ENGEIIKKYSYL---VNLEVVIPASATAV 79

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
             IT +        E      + +F         +I  +N  FD  +      R  YD  
Sbjct: 80  NHITNEMIQDA-TKEDTVYAELVKFLDDALKEQTVICAHNATFDMKFISETLMRLGYD-- 136

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                      D L + R ++    +             +K   +A    + +  +H A 
Sbjct: 137 -----GKIHYVDTLSLSRNLFKGLHN-------------YKQDTVATHFELVNFQSHRAV 178

Query: 179 ADVYATLALV 188
           +D      ++
Sbjct: 179 SDAEICGRIL 188


>gi|89890044|ref|ZP_01201555.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
 gi|89518317|gb|EAS20973.1| DNA  polymerase III [Flavobacteria bacterium BBFL7]
          Length = 1450

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 66/206 (32%), Gaps = 30/206 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     I   + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPKRWDAPYTDVDNWPRVIQIAWQLHDEMGNLI-EHKDYLVKPDGFDIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+   A + GV   E     +   S      +   N++FD   +   F R  
Sbjct: 61  -DAERIHGISTALADQQGVPLEEMLSEFNIALSKAK--FVVGQNLKFDLNVTGAEFER-- 115

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
                       +    + V+      +    Q P    G   FKL  L           
Sbjct: 116 --------TQIANDLQEIPVLDTCTEHTAQLCQIPGGRGGK--FKLPTLTELHQFLFNQP 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKP 196
              AH+A ADV AT      +  K+ 
Sbjct: 166 FGEAHNATADVEATTRCFLELIRKQQ 191


>gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
 gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
          Length = 484

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 70/233 (30%), Gaps = 30/233 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F ++D ET G     D   Q   VRV      I   E               +  + G++
Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRV-LNGRLI-EGEELNTLVDPGRPIPEASTRVHGVS 334

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    + AE +   H F       +I  +N  FD  + R     +           
Sbjct: 335 TAMVQGAPDI-AEAAAEFHLF---ATDAVIVAHNAPFDMAFLRRHAKASGLAW------- 383

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                 +LD +                   +    L  L     I    A  H A  D  
Sbjct: 384 ---DHPILDTVLLSAVLF----------GASVPHTLDALCERLDITIPPALRHTALGDAQ 430

Query: 183 ATL-ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           AT  ALV +I   + + F  L     + Q    + ++++ P+ +    + A +
Sbjct: 431 ATACALVQMIPMLQARGFNSLLQVIEQTQRHGRL-LEDLNPVDNHGSTWQAGK 482


>gi|94311147|ref|YP_584357.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93354999|gb|ABF09088.1| DNA polymerase III epsilon subunit [Cupriavidus metallidurans CH34]
          Length = 241

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 56/201 (27%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + A  DR  +   V +            F+  P  D     +A+ + GIT
Sbjct: 4   IVLDTETTGLNHATGDRLIEIGCVEL-VNRRLTGRHLHFYVNPERD--IHEDAIAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE    +  F       I   +N  FD  +    F R     +R    N
Sbjct: 61  LDFLADKPK-FAEIVNDVRDFVQDAELII---HNAPFDLGFLDMEFQRLDLPPFRQHASN 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                 ++D +R                       L  L    G    H   H A  D  
Sbjct: 117 ------VIDTLREARQMF-----------PGKRNSLDALCDRLGVSNSHRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQNSLVIDML 180


>gi|68535768|ref|YP_250473.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411]
 gi|68263367|emb|CAI36855.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411]
          Length = 222

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 8/108 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G +   DR  + A VR D  +  ++S          D     +   I GIT
Sbjct: 21  FAVIDTETTGFNKRYDRIIEIAAVRADAHFNPVDSWHTL---LNPDGK-AIKNSHIHGIT 76

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                      +E       F S  +   +  +N  FD         R
Sbjct: 77  NDMVATAP-TFSEVYG---DFTSYIDGMHLFAHNAPFDSKMIVAEVDR 120


>gi|126661959|ref|ZP_01732958.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium
           BAL38]
 gi|126625338|gb|EAZ96027.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium
           BAL38]
          Length = 256

 Score = 89.5 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 77/241 (31%), Gaps = 28/241 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G DVA DR  + +  +V     K    E             P+   +
Sbjct: 5   LTRPICFFDLETTGIDVARDRIVEISIFKVYPNGNK----ESKTWLVNPTIPIPPQTTAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +K   +     E + ++H      +  + G+N+ RFD         R   D    
Sbjct: 61  HGITDEKVANEP-TFKELATQVHNMIKDSD--LAGFNSDRFDIPLLAEELLRAEVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                       D+   +                + ++K        G    NAH A+AD
Sbjct: 114 -----------FDMKNRVSVDVQTIFHKMEERTLSAAYKF-----YCGQSLENAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239
             AT  ++    ++   L   +         +K +D      L      +F   +   AL
Sbjct: 158 TMATYEILKSQLDRYENLENDMKSLSEFTTRKKSVDFAGFITLNKEGKEIFSFGKHKGAL 217

Query: 240 I 240
           +
Sbjct: 218 V 218


>gi|89894618|ref|YP_518105.1| hypothetical protein DSY1872 [Desulfitobacterium hafniense Y51]
 gi|89334066|dbj|BAE83661.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 929

 Score = 89.5 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 70/189 (37%), Gaps = 32/189 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V+ D ET G D+  D   +FA + ++      E  E F    +         + +TGI
Sbjct: 5   KIVVIDIETTGFDIYNDEIIEFAALCIEEG----EEAEAFSVLISPRRQVPERILRLTGI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +P++  + G + A +  +I   F      II  +N+ FD  +       +F         
Sbjct: 61  SPEELKQAGSLHA-YRDKILDLFQD---AIIVGHNVEFDLGFLEQALTIHF--------- 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVY 182
             N+ WD L++ R +Y                  +KL DL  + G      AH A  D  
Sbjct: 108 -ENTLWDTLEIARILY-------------PNMPKYKLGDLTKSLGLTPLEKAHRALFDAR 153

Query: 183 ATLALVWLI 191
           A   L+   
Sbjct: 154 AAWELLQAC 162


>gi|330718588|ref|ZP_08313188.1| Rad3-related DNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 798

 Score = 89.5 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 64/192 (33%), Gaps = 31/192 (16%)

Query: 1   MTN---HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M N    FV+ D ET G+ V    R  Q     + ++ + ++  E F        L D +
Sbjct: 4   MMNANDSFVVVDLETTGQSVDRGGRIIQIGMTFI-KKRKIVDHFETF---VNPGQLIDRQ 59

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +T I+  +       E E +  IH         +I  +N+ FD  Y    F R    
Sbjct: 60  IQQLTHISQNEVQHAPYFE-EIAPVIHTLLKDS---VIIAHNVNFDYPYLNEEFERAGLS 115

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                          +D +                   A  ++L DL     I+  NAH 
Sbjct: 116 PL---------DIPAIDTVMLSQILL----------PTAPGYRLVDLTQYLDIKLSNAHR 156

Query: 177 AKADVYATLALV 188
           A  D +AT  L 
Sbjct: 157 ANEDAHATAELF 168


>gi|293606916|ref|ZP_06689263.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553]
 gi|292814648|gb|EFF73782.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553]
          Length = 208

 Score = 89.5 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 58/182 (31%), Gaps = 29/182 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
           F++ D ET G   A     +FA VRV    E   +    + +      P P     +TGI
Sbjct: 39  FIVADLETTGLSTATCEILEFAAVRV----ETCGTLAREYTQVVRTAAPVPSFITRLTGI 94

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +  R GV      +    F        + ++N  FD  +      R        +  
Sbjct: 95  TQAEVDRHGVP---VMQAFSSFLEFVEDLPVFFHNASFDRRFLGAAADRTGMPFANAT-- 149

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L + R  +                 S KL  LA   G  +   H A ADV  
Sbjct: 150 -----HCTLALARRAW-------------PELPSHKLDILARHVGASN-PTHRALADVRT 190

Query: 184 TL 185
           T+
Sbjct: 191 TV 192


>gi|254252714|ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
 gi|124895323|gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
          Length = 244

 Score = 89.5 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 59/201 (29%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARAGDRIIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE + +I +F       I   +N  FD  +    F       +      
Sbjct: 61  TEFLSDKPK-FAEVADQIREFVRGAELII---HNAPFDLGFLDAEFALLGLPPFSEHCAG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|254240149|ref|ZP_04933471.1| exonuclease [Pseudomonas aeruginosa 2192]
 gi|126193527|gb|EAZ57590.1| exonuclease [Pseudomonas aeruginosa 2192]
          Length = 201

 Score = 89.5 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 30/201 (14%)

Query: 7   IYDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           I+D+ET G         D       + A +  D     I+  E    +P    +  PE  
Sbjct: 5   IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEA-IVRPNGWEI-TPEMT 62

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GI+ ++A+  G+ EAE                   +NI FDD  +R    R   +  
Sbjct: 63  AIHGISHEQAMDVGISEAEALEGFLAI--NGRAARRAAHNISFDDRITRIALMRYQDEDA 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV----NA 174
             ++     ++      RA  A                  KL  LA A           A
Sbjct: 121 ANAFKESGEKFCTCYRSRAQVAL--------------PRNKLPTLAEAYKHFTGEDLVEA 166

Query: 175 HDAKADVYATLALVWLIREKK 195
           H A  D  A   + + ++   
Sbjct: 167 HRAMPDAQACARIYFALQGVD 187


>gi|238925353|ref|YP_002938870.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC
           33656]
 gi|238877029|gb|ACR76736.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC
           33656]
          Length = 245

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 28/189 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            ++ + D E  G     D+  +    RV R  E +++                    +TG
Sbjct: 8   KNYTVIDLEMTGLSAKNDKIIEIGAARV-RGGEIVDTISTL---VNPKQHIPQRVQELTG 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT           A+    +    +     II   N+ FD  + +     +         
Sbjct: 64  ITDSDVENA----ADMDEAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVNH-------KR 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               + +D L + R                    S KL+DL    G+   NAH A  D  
Sbjct: 113 TLSLNAYDTLKIARKC-------------LPAEQSKKLEDLCEYFGVSRKNAHRALDDAI 159

Query: 183 ATLALVWLI 191
            T  +   +
Sbjct: 160 ETKQIFEKL 168


>gi|241767097|ref|ZP_04764869.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241362329|gb|EER58323.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 153

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 46/180 (25%), Gaps = 30/180 (16%)

Query: 1   MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G       R  + A V +D     ++  +             P    
Sbjct: 1   MPQPIAVIDFETTGMGPGQGARATEVAIVLLD-NGVVVDRFQSLM---KTGAWIPPFITQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT            + +  + +         +  +N  FD  + +         +  
Sbjct: 57  LTGITNAMVNAAP----QAAAVMREAARFVGNAPMVAHNAAFDRKFWQAELALAGLPAP- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178
                          +                   A S KL  L   +G+     AH A 
Sbjct: 112 ---------HPFACTVLLSRRLY----------PQAPSHKLGMLVDYHGLPRTGQAHRAL 152


>gi|258541965|ref|YP_003187398.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633043|dbj|BAH99018.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636100|dbj|BAI02069.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639155|dbj|BAI05117.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642209|dbj|BAI08164.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645264|dbj|BAI11212.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648319|dbj|BAI14260.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651372|dbj|BAI17306.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654363|dbj|BAI20290.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 224

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 55/191 (28%), Gaps = 30/191 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    + +D ET G D A  DR  + A + +        +          +     EA  
Sbjct: 1   MKRSIL-FDTETTGLDPATGDRVIEIAALELVGDLPTGRNFHTL---IDPERDVPEEASR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + G T           AE +     F +      +  +N RFD  +      R    +  
Sbjct: 57  VHGFTRADLEGKPK-FAEIAD---DFLAFVGDDPLIAHNARFDFGFMNAELKRAGKKTL- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
                 +   D LD+ R  +   P+               L  L    G++      H+A
Sbjct: 112 ----GLDRMVDTLDMARERFPGMPN--------------SLDALCRRFGVDLSARTTHNA 153

Query: 178 KADVYATLALV 188
             D      + 
Sbjct: 154 LLDCKLLADVY 164


>gi|254482913|ref|ZP_05096149.1| exonuclease, DNA polymerase III, epsilon subunit family [marine
           gamma proteobacterium HTCC2148]
 gi|214036785|gb|EEB77456.1| exonuclease, DNA polymerase III, epsilon subunit family [marine
           gamma proteobacterium HTCC2148]
          Length = 206

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 50/199 (25%), Gaps = 30/199 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  V+ D+ET G      DR  +   VR+    +     +            D      T
Sbjct: 5   DTVVVLDFETTGLSPGEGDRAIEIGAVRI-ESGKVTARFQELM---NPGRRVDSFIESFT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT           ++  R    F    N   +  +N  FD  +      R         
Sbjct: 61  GITNLMLADA-RPCSDVMRDFADFIGEDN---LVAHNASFDKRFLDAELERI-------- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                        +     FS   +        A   KL  L     I      H A  D
Sbjct: 109 ------------ALSYTGQFSCSMLAARRIFQQAPDHKLGTLVEFMNIPVEGVFHRALYD 156

Query: 181 VYATLALVWLIREKKPKLF 199
              T  L   +     + +
Sbjct: 157 SEMTAKLWLAMLNDVRRRY 175


>gi|167032729|ref|YP_001667960.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
 gi|166859217|gb|ABY97624.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
          Length = 203

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 64/205 (31%), Gaps = 13/205 (6%)

Query: 1   MTNHFVIYDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           M+    ++D ET G                     +    + E ++S E    +P    +
Sbjct: 1   MSELICVFDTETTGFPNFKAPSDHPDQPHIVDICALLYTPEGELVDSFEA-MVRPDGWSI 59

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           P+  AV I GIT + AL  G+ EA         ++     +   +N+ FDD   R    R
Sbjct: 60  PNEVAV-IHGITNELALEHGIPEALAIEGFLNIWNQAG--LRVAHNVSFDDRIMRIALKR 116

Query: 113 NFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                   ++ +                  +   I              + L    G + 
Sbjct: 117 FQDAWVAETFRDSPKFCTCQSTTSIVKCPPTEKMIAAGRGKQHKPPTVTEALKFFTGEDL 176

Query: 172 VNAHDAKADVYATLALVWLIREKKP 196
           V  H A+ D  A   + + ++  + 
Sbjct: 177 VGGHRARPDAEACARVYFALQAFQS 201


>gi|269140166|ref|YP_003296867.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
 gi|267985827|gb|ACY85656.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
 gi|304559999|gb|ADM42663.1| DNA polymerase III epsilon subunit [Edwardsiella tarda FL6-60]
          Length = 243

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 56/199 (28%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQVGAHYEGHRIIEIGAVEV-VNRRLTGR--NFHVYLKPDRLVDPEAFTV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+    L      AE +     F        +  +N  FD  +    F +   D  + 
Sbjct: 66  HGISDDFLLDKP-SFAEVADEFLAFIRGAE---LVIHNAPFDIGFMDYEFAKLGRDLPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCTITDSLVMARRLFPG--------------KRNSLDALCNRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +  ++   +  
Sbjct: 166 LDAQILADVYLIMTGGQTS 184


>gi|189467072|ref|ZP_03015857.1| hypothetical protein BACINT_03455 [Bacteroides intestinalis DSM
           17393]
 gi|189435336|gb|EDV04321.1| hypothetical protein BACINT_03455 [Bacteroides intestinalis DSM
           17393]
          Length = 256

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G  + +DR  +   ++V     +   T     +   +      A  +
Sbjct: 5   LKNPIVFFDLETTGTSINVDRIVEICYLKVHPNGNEEAKTL----RINPEMHIPEGASAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI     +       E +R I          + G+N+ RFD       F R   D    
Sbjct: 61  HGIYDADVVDCP-TFKEVARTIANDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+ R  +           +   + ++K        G    +AH A AD
Sbjct: 114 -----------IDLSRRKFVDVQVIFHKLEQRTLSAAYKF-----YCGKNLEDAHTAAAD 157

Query: 181 VYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  ++    ++ P+   +  +     +  + +     M    +   +F   +     
Sbjct: 158 TQATYEVLMAQLDRYPELQNDIAFLAEYSSFNKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217

Query: 240 IAPVA-WHPRYKDSVI 254
           +  V    P Y   ++
Sbjct: 218 VTDVLKRDPGYYSWIL 233


>gi|299066469|emb|CBJ37657.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CMR15]
          Length = 242

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 59/202 (29%), Gaps = 27/202 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + A  DR  +   V +            F+     +   D  A+ + GIT
Sbjct: 4   IVLDTETTGLNAATGDRVIEIGCVEL-VNRRLTGRNLHFYF--NPERQIDAGAMAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    I  +       I   +N  FD  +    F R    S      +
Sbjct: 61  NEFVADKPK-FAEVVDEIRDYVQGAEAII---HNAAFDLGFLDMEFKRLGLPS-FREHLD 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
           G+   D L   R ++                    L  L    G+   H   H A  D  
Sbjct: 116 GH--IDTLLDARRMFPG--------------KRNSLDALCDRLGVSNAHRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
               +   +   +  L   + +
Sbjct: 160 LLAEVYLAMTRGQNTLVIDMLE 181


>gi|159899742|ref|YP_001545989.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892781|gb|ABX05861.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 927

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 76/248 (30%), Gaps = 38/248 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   ++  D ET G +   D   +   V+     E +E+ +          +   +   +
Sbjct: 1   MEPIYIALDLETTGLEPGRDEIIEVGAVKFRGN-EVLETYQTL---VKPKQVLPIKIARL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI   +             ++ +F        I  +++  D  + +    +     Y  
Sbjct: 57  TGIDAHELTTAP-TFNSIGGQLAKFLKS---YPIIGHSVDNDLRFLQQQGLKVTQPHY-- 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D  D+                      ++ L  +A    I+H +AH A AD
Sbjct: 111 ---------DTFDLA-------------TLLIPQLPNYSLSTIAEHLQIQHPDAHRALAD 148

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             A+  +   + +K  +           + + +        PL  + G     R  T   
Sbjct: 149 AEASRLVFSALLDKLAE-----LSAAELHSIAQTTQKLQW-PLAKLFGEIAKRRVQTLWQ 202

Query: 241 APVAWHPR 248
           AP+ + P+
Sbjct: 203 APIEFQPK 210


>gi|238921062|ref|YP_002934577.1| DNA polymerase III subunit epsilon [Edwardsiella ictaluri 93-146]
 gi|238870631|gb|ACR70342.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 243

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 56/198 (28%), Gaps = 30/198 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQVGAHYEGHRIIEIGAVEV-VNRRLTGR--NFHVYLKPDRLVDPEAFTV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+    L      AE +     F        +  +N  FD  +    F +   D  + 
Sbjct: 66  HGISDDFLLDKP-SFAEVADEFLAFIRGAE---LVIHNAPFDIGFMDYEFAKLGRDLPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCTITDSLVMARRLFPG--------------KRNSLDALCNRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKP 196
            D      +  ++   + 
Sbjct: 166 LDAQILADVYLIMTGGQT 183


>gi|217978678|ref|YP_002362825.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
 gi|217504054|gb|ACK51463.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
          Length = 235

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 53/186 (28%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  +   V        I + + F      +     EA  + GI+
Sbjct: 4   IVLDTETTGLDPKQGHRIVEIGAV---ELLNSIPTGQSFHVYIHPERDMPDEAFRVHGIS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  AE    +  F        I  +N  FD  +    F R   +   W    
Sbjct: 61  LEFLTGKPL-FAEIVPALIDFLGEAK---IIAHNAEFDFRFLNAEFLRAEAEPLAWE--- 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  +              S  L  L    G++      H A  D  
Sbjct: 114 --RVVDTLALARRRFPGA--------------SNSLDALCARFGVDTSRRVKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 ILAEVY 163


>gi|163754237|ref|ZP_02161360.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
 gi|161326451|gb|EDP97777.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
          Length = 457

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 82/284 (28%), Gaps = 34/284 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             + I D ET GR    ++  + +  + D +   ++           + L       +TG
Sbjct: 5   PTYTIIDVETTGRS---NKITEISIFKFDGE-TIVDEFTSL---VNPNVLIPTHITALTG 57

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I            AE ++ +          I   +N+ FD    RN F     D      
Sbjct: 58  IDNAMVADAP-TFAEIAKEVLSITKDS---IFVAHNVNFDYNVIRNEFKAIDLD------ 107

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   L  +R   A             G  S+ L  L  +  I   + H A+ D  
Sbjct: 108 ----FRRKKLCTVRLSRAL----------IPGFKSYSLGKLCKSLNIHISDRHRARGDAA 153

Query: 183 ATLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           AT+ L  L+  K    + F+      +K           +   +         +     I
Sbjct: 154 ATVILFQLLLTKDAAAETFQKFLKRESKEATLPPHLPSKIFDDLPAKPGIYYFKDKKGKI 213

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL 284
             V      +  V+G +     +   DL           S  EL
Sbjct: 214 IYVGKAKNIQKRVLG-HFYNKSKKELDLCRETADIDYELSGSEL 256


>gi|42519676|ref|NP_965606.1| hypothetical protein LJ0649 [Lactobacillus johnsonii NCC 533]
 gi|41583965|gb|AAS09572.1| hypothetical protein LJ_0649 [Lactobacillus johnsonii NCC 533]
          Length = 320

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 78/239 (32%), Gaps = 28/239 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +++ + D ET G     DR  +  G++V    E + +       P  + +P      + 
Sbjct: 30  PDNYTLIDVETTGLSPYRDRITEMGGLKVRH-GEVVATFSELVKFPDSNKVP-AFITKLN 87

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI        G+   E  ++  +F    +  I+GYN               NF       
Sbjct: 88  GIDETTIEEKGLPVQEAIKKYREFI--GSDPIVGYNVNFDL----------NFVYDLAEK 135

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +       D +DV R   +F P               +L D      I     H    D 
Sbjct: 136 YHLTVLNNDYVDVYRLARSFYPQEQH----------NRLLDCMHRLDIAETQEHRGLDDC 185

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             T      + ++  KLF+  +  R +  ++ L        LV  S  F +  ++  ++
Sbjct: 186 LDT----KKVFDEFHKLFKQEHMLRAQEMVKTLDLTSEWPELVKQSQAFRSPFAHKNVV 240


>gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 485

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 59/221 (26%), Gaps = 32/221 (14%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            +VI+D ET G      D   Q A  RV    + +  TE+F             A  I G
Sbjct: 290 KYVIFDTETTGLLPERGDEVCQIAACRV-VNGKMV-KTEMFDTLVNPGRPIPLSATNIHG 347

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            +F      F    +  ++  +N  FD  +                 
Sbjct: 348 ITDAMVADAP----DFLTAGRAFHGFADGAVLIAHNAPFDMAFFYRKQAEIG-------- 395

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKAD 180
                        R  +      +             L  LA      I     H A  D
Sbjct: 396 ------------ARFDHPVLDTVLLSAVIYGQTEQHSLDALAERLNVTIPEEARHTALGD 443

Query: 181 VYATLALV-WLIREKKPKLFEYL--YDYRNKNQLRKLIDIQ 218
             AT  +   L+   + K  E       + K   R L D+ 
Sbjct: 444 ALATTEVFLKLLPMLQAKGIETFGDLLAQTKKHARLLEDLN 484


>gi|318076131|ref|ZP_07983463.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 384

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 58/193 (30%), Gaps = 18/193 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A +R+D                        EA  I GI   +
Sbjct: 11  FDLETTGTDVEQDRIVTAAVIRLDSSGTV---AHTRTWLLDPGVEIPAEATAIHGIPTAR 67

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A  DG         I +  +      T ++  N  R+D         R+   +       
Sbjct: 68  ARADGAPARGAVAEITEALAAELRAGTPLVVMNA-RYDLSLLDRECRRHGVPALAE--LL 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G     ++D +              +      S  L  L    G+    AHDA++D  A 
Sbjct: 125 GAEPAPVIDPLVLDKH---------ADRYRRGSRVLAALCAHYGVRLDTAHDARSDALAA 175

Query: 185 LALVWLIREKKPK 197
             L   +    P 
Sbjct: 176 TLLARSLGAHHPT 188


>gi|318060902|ref|ZP_07979623.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
          Length = 239

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 58/193 (30%), Gaps = 18/193 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A +R+D                        EA  I GI   +
Sbjct: 11  FDLETTGTDVEQDRIVTAAVIRLDSSGTV---AHTRTWLLDPGVEIPAEATAIHGIPTAR 67

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A  DG         I +  +      T ++  N  R+D         R+   +       
Sbjct: 68  ARADGAPARGAVAEITEALAAELRAGTPLVVMNA-RYDLSLLDRECRRHGVPALAE--LL 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G     ++D +              +      S  L  L    G+    AHDA++D  A 
Sbjct: 125 GAEPAPVIDPLVLDKH---------ADRYRRGSRVLAALCAHYGVRLDTAHDARSDALAA 175

Query: 185 LALVWLIREKKPK 197
             L   +    P 
Sbjct: 176 TLLARSLGAHHPT 188


>gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium siraeum 70/3]
          Length = 361

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 57/189 (30%), Gaps = 30/189 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G     D   +   +RV    + +                      ITGIT  
Sbjct: 11  IVDIETTGLSPDNDNIIEIGALRVRDN-KIVADFSQLIKASKP---LSKTISQITGITDD 66

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                     E    +  F    +   +  +NI FD  +          D          
Sbjct: 67  MLADAK----ELDDTLSDFLRFVDNDTVVGHNIAFDANFISKKCVAYGLD---------- 112

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKADVYATL 185
            + D  D + A     PD            S KL+D+ +  GI +    H A AD Y T 
Sbjct: 113 FKNDTYDTLAACKQEYPDV-----------SHKLEDMIIQLGIKDSGIHHRALADCYHTH 161

Query: 186 ALVWLIREK 194
           +L+  ++  
Sbjct: 162 SLMTALKNH 170


>gi|86140827|ref|ZP_01059386.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis
           MED217]
 gi|85832769|gb|EAQ51218.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis
           MED217]
          Length = 221

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 19/188 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G +   DR      + +      + S+   + K     + + EAV I GI 
Sbjct: 36  FVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQ---EVFNEEAVAIHGIL 92

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V E E  +   +F       I+  +++ FD         R      +  + +
Sbjct: 93  RENRKYKKVSEEEAVKAFLEFI---GDAILVGHHVGFDIGIINYALKRLGAPKLKNKFTD 149

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                +   +  D    + L DL     I   + H A  D Y T
Sbjct: 150 TG-------------VLYKRTVHLVNITDPNKVYTLDDLCEELNIAKTDRHKAMGDAYIT 196

Query: 185 LALVWLIR 192
                 + 
Sbjct: 197 ALAFLKVM 204


>gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
          Length = 1442

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 113/387 (29%), Gaps = 40/387 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  + + +  ++I     FF KP  +   +     +T I
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      + E     +I + F+  N  ++ +N I FD  +      +   +       
Sbjct: 465 SQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL----- 516

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D L + RAI  F               S +L  +     +++ +  AH A  D 
Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239
                +  +++      FE +   +   +L+ L+         +          +    L
Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           ++       Y    I  +   + +        +    L   L++  D+    +   ++  
Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                P +    +     + +             L+              +  Y      
Sbjct: 679 DFITLPSIGSQKH---LVYAQKMTLENVQKAFKKLVSLALESNKPIIYSSSPYYFLKDDK 735

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382
               +Y        +          P+
Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762


>gi|226939810|ref|YP_002794883.1| DnaQ [Laribacter hongkongensis HLHK9]
 gi|226714736|gb|ACO73874.1| DnaQ [Laribacter hongkongensis HLHK9]
          Length = 240

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 57/194 (29%), Gaps = 26/194 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G D    R  + AG+ +    +        +  P  D   DP+A  + GI+ 
Sbjct: 4   IILDTETTGLDPQSHRLIEVAGLEM-VNRKLTGRHLHLYIHPQRD--IDPDAQRVHGISL 60

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  V     +  I  F       I   +N  FD  +    F R    +   +    
Sbjct: 61  DMLEGKPV-FKAVAGEIADFLRDAELII---HNAAFDIGFLNAEFARVGLPA---TQKVA 113

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183
            +  D L + R I+                    L  L     I+  N   H A  D   
Sbjct: 114 GNVIDTLAMAREIFPG--------------KRNNLDALCDRFDIDRSNRTLHGALIDCEL 159

Query: 184 TLALVWLIREKKPK 197
              +   +   +  
Sbjct: 160 LADVYLAMTRGQES 173


>gi|225012673|ref|ZP_03703108.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-2A]
 gi|225003206|gb|EEG41181.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-2A]
          Length = 257

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 80/257 (31%), Gaps = 33/257 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYLPDPEAVF 59
           +T     +D ET G D++ DR  + A +++     ++ +       +   +     EA  
Sbjct: 5   LTKPLCFFDLETTGTDISKDRIVEIAVLKLHPDGLQEKKEW-----RTNPEQPIPAEASA 59

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +    +     E S  I+ F       + GYN+ RFD         R   D   
Sbjct: 60  VHGITDEMVASEP-TFKELSNEIYSFIK--GCDLAGYNSDRFDIPLLVEELLRAEVDFDF 116

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            +        D+  +   +   +                    L      E  +AH A A
Sbjct: 117 KNNKT----VDVQTIFHKMEQRTLT----------------AALRFYCNEELTDAHSAHA 156

Query: 180 DVYATLALVWLI---REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
           D  AT  ++       ++      +L ++ ++ +                   FG  +  
Sbjct: 157 DTKATHDVLIAQLDRYQELEPNIAFLNEFSSRRKTVDFAGFVVYNKDEEACFGFGKHKGK 216

Query: 237 TALIAPVAWHPRYKDSV 253
                 +A  P Y   V
Sbjct: 217 KVTDI-LANEPGYFGWV 232


>gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
          Length = 1442

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/426 (13%), Positives = 121/426 (28%), Gaps = 51/426 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  + + +  ++I     FF KP  +   +     +T I
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +      + E     +I + F+  N  ++ +N I FD  +      +   +       
Sbjct: 465 NQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLEN--- 518

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
                 D L + RAI  F               S +L  +     +++ +  AH A  D 
Sbjct: 519 ---PSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239
                +  +++      FE +   +   +L+ L+         +          +    L
Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           ++       Y    I  +   + +        +    L   L++  D+    +   ++  
Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                P +    +     + +             L+              +  Y      
Sbjct: 679 DFITLPSIGSQKH---LVYAQKITLENVQKAFKKLVNLALESNKLIIYSSSPYYFLKDDK 735

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAP-----EQLSTLNLP--FSDRRLPELFFRYRARNF 408
               +Y        +          P     +Q S ++      D  L  L         
Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPDLEYVDQKSAIDELAYLEDENLVNL----IINEN 791

Query: 409 PHTLSE 414
           P  ++ 
Sbjct: 792 PQIINS 797


>gi|317407747|gb|EFV87675.1| exonuclease [Achromobacter xylosoxidans C54]
          Length = 183

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 56/183 (30%), Gaps = 27/183 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G   A     +FA VRV       E       +        P    +TGIT
Sbjct: 17  FVVADLETTGLSTASCEILEFAAVRVGADGAA-EREYAQVVRTRATV--PPFITRLTGIT 73

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  R GV   +       F        + ++N  FD  +      +        +   
Sbjct: 74  EAEVERQGVPVGQAFAAFLDFVED---LPVFFHNASFDRRFLDAAALQTGLPFANAT--- 127

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L + R  +                 S KL  LA   G      H A ADV  T
Sbjct: 128 ----HCTLALARRAW-------------PELPSHKLDVLARHVGAS-EPTHRALADVRTT 169

Query: 185 LAL 187
           +A+
Sbjct: 170 VAV 172


>gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
 gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
          Length = 866

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 25/176 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D E+ G DV  D   Q A VR+     +    E F C       P   +  + G + 
Sbjct: 513 VVFDVESTGADVYTDDIVQIAAVRLSPGGGEAVRFERFLC----PSRPVGASERVHGFSD 568

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                +G         +  F      C++  +N+ FD   +     R             
Sbjct: 569 AFLAENGGAP---CAALEDFLDFSKGCVLVGHNVMFDLTITSQNLARAG-----SVQTLS 620

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           N  +D LD+ R                    + KL  ++ A G  H  +H+A  D+
Sbjct: 621 NVWYDTLDISRRY-------------MKDLPNHKLSTVSAALGAAHDPSHNAMDDI 663


>gi|120554453|ref|YP_958804.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
 gi|120324302|gb|ABM18617.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
          Length = 236

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 59/197 (29%), Gaps = 33/197 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G D     R  +   V      E IE       +      +   + EA+ + 
Sbjct: 4   IVLDTETTGIDPNEGHRIIEIGCV------EVIERELTGRNYHVYINPEREVEAEAITVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +         AE +    +F        +  +N  FD  +  + F R         
Sbjct: 58  GITNEFLADKPK-FAEVADEFFEFIKGAE---LVIHNAAFDVGFMDSEFARL---KPVRK 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
             +     D L + R  +    +               L  L    G+++ N   H A  
Sbjct: 111 TADHCGIVDSLAIARKKHPGQKN--------------NLDALCKRYGVDNSNRDLHGALL 156

Query: 180 DVYATLALVWLIREKKP 196
           D      +  L+   + 
Sbjct: 157 DAEILADVYLLMTGGQT 173


>gi|269837031|ref|YP_003319259.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786294|gb|ACZ38437.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
          Length = 966

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 32/193 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  +V  D E  G D   D   + A ++       ++  E    +P      +     +
Sbjct: 1   MSGIYVALDLEATGMDPERDEIIEIAAIKFRND-RVLDRWESL-VRPRGPIPFN--ITSL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  +   R   +    + R+  F        I   +  FD         R     Y  
Sbjct: 57  TGIGAKDVRRAP-IFPVVAPRLRDFVRNH---PIVGQSPEFDIQMLAGAGLRLQNPLYDT 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL                         ++ L  +A   G+   + H A AD
Sbjct: 113 FQLATILIPDL------------------------PAYNLATIAARLGVSVPHQHRAMAD 148

Query: 181 VYATLALVWLIRE 193
           V  T+A+   +++
Sbjct: 149 VETTMAVFLGLQD 161


>gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis
           MSMB43]
          Length = 379

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 49/189 (25%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +   V V+           +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEIGVVVVNAS-----HVSTWTTLVDPRQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIASAL---FERLDGKLFVAHNASFDRGFLRAEFERAGVAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIRE 193
                 + +
Sbjct: 166 WQFWQKLHD 174


>gi|330994285|ref|ZP_08318213.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
 gi|329758752|gb|EGG75268.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
          Length = 226

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 52/191 (27%), Gaps = 30/191 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    + +D ET G D    DR  + A + +            F      +     EA  
Sbjct: 1   MKRTIL-FDTETTGLDPLKGDRVIEIAALELVGDL-PTGR--NFHVLIDPERDVPEEASR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + G T           AE +    +F        +  +N RFD  +      R       
Sbjct: 57  VHGFTRADLEGKPK-FAEVASGFLEFV---GDDPLIAHNARFDFGFLNAELARAGQPVLD 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                     D LD+ R  +   P+               L  L     I+      H+A
Sbjct: 113 MGRM-----VDTLDMARERFPGMPN--------------SLDALCRRFSIDLSERTTHNA 153

Query: 178 KADVYATLALV 188
             D     A+ 
Sbjct: 154 LLDCRLLAAVY 164


>gi|160878305|ref|YP_001557273.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans
           ISDg]
 gi|160426971|gb|ABX40534.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans
           ISDg]
          Length = 235

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 62/212 (29%), Gaps = 29/212 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D E+ G     DR  + A +R     +  E  E                  +TGI
Sbjct: 2   NFLAIDIESTGLSPEKDRIIEIAAIRY-IDGKPKERFEKL---INPGCPLPERITELTGI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        + E E  +   +F +     ++  +N+  D  + +    R           
Sbjct: 58  TEDMLAGA-MTEREVIK---EFLTFAGEDVLLGHNVSVDFSFIKTAADRL---------K 104

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G  R   +D +        D  +            L+ +    GI    +H A  D  A
Sbjct: 105 IGYER-QGIDTLYLSRTLKSDLEK----------KNLESMCEHYGIIRECSHRALEDAIA 153

Query: 184 TLALV-WLIREKKPKLFEYLYDYRNKNQLRKL 214
              L   L  E              K +++K 
Sbjct: 154 AATLYQKLYEEFNNNFEALFLPVELKYKVKKQ 185


>gi|305665420|ref|YP_003861707.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170]
 gi|88710175|gb|EAR02407.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170]
          Length = 1478

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 30/204 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D     +ES + +  +P    +P 
Sbjct: 2   YLIFDTETTGLPKRWNAPITDTDNWPRCIQIAWQLHDEMGNLVESQD-YLVQPDGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A ++GV  AE   + +   S   T  I   N+ FD       F+R  
Sbjct: 61  -DAEQIHGISTELAAQEGVPLAEVLEKFNVAMSK--TKFIVGQNVGFDVNIMGAEFHRMG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            +       N      +LD      A                 FKL  L           
Sbjct: 118 VE-------NPLQELPVLDTCTEESALLCQIP-----GGRGGKFKLPTLTELHEYLFNAP 165

Query: 171 HVNAHDAKADVYATLALVWLIREK 194
              AH+A ADV AT      +  +
Sbjct: 166 FAEAHNATADVEATTRCFLELVRR 189


>gi|311103923|ref|YP_003976776.1| DNA polymerase III subunit epsilon [Achromobacter xylosoxidans A8]
 gi|310758612|gb|ADP14061.1| DNA polymerase III, epsilon subunit [Achromobacter xylosoxidans A8]
          Length = 240

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I+D ET G D A   R  +   V       ++ +          D   DPEA+ + G+T
Sbjct: 4   IIFDTETTGLDPAQGHRIVEIGCV---EMVNRMSTGNNLHIYLNPDRDSDPEALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+ +    +F        +  +N  FD  +      +            
Sbjct: 61  TEFLSDKPR-FADVADEFVKFIQGAE---LIAHNAAFDVKFFNAELAKTGRGP------- 109

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                     +        D +             L  L    GI   H   H A  D  
Sbjct: 110 ----------VTDYCETVTDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQ 159

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 160 LLAEVWLAMTRGQD 173


>gi|293603370|ref|ZP_06685798.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292818280|gb|EFF77333.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 239

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 51/194 (26%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I+D ET G D A   R  +   V       ++ +          D   DPEA+ + G+T
Sbjct: 4   IIFDTETTGLDPAQGHRIVEIGCV---EMVNRMSTGNNLHIYLNPDRDSDPEALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +           F+  + +F        +  +N  FD  +      +            
Sbjct: 61  TEFLSDKPR----FADVVDEFVKFIQGAELIAHNAAFDVKFFNAELAKTGRGPIT----- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                              D +             L  L    GI   H   H A  D  
Sbjct: 112 ------------EYCETVTDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQ 159

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 160 LLAEVWLAMTRGQD 173


>gi|298485963|ref|ZP_07004037.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159440|gb|EFI00487.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 244

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 64/204 (31%), Gaps = 17/204 (8%)

Query: 1   MTNHFVIYDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           M+     YD ET G         D           +    Q E ++S E    KP    +
Sbjct: 40  MSQLIAFYDTETTGLPRFKDPSDDPRQPHLVDICILLYTPQGELVDSFEAMI-KPEGWTI 98

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           PD  A  I GIT + AL  G+ E E      + +      +   +N+ FDD   R    R
Sbjct: 99  PDEVA-AIHGITTEMALEQGIPELEALGGFLRVYEQAG--LRVAHNVSFDDRIMRIAIKR 155

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
              +     +      +      + I    P      +       +K+  +A A      
Sbjct: 156 FIGEQAANEFKA-MPNYCTCQSSKNIVKCPPTAKMIAAGFGRPGMYKVPTVAEALRHFTG 214

Query: 173 NA----HDAKADVYATLALVWLIR 192
                 H A+ D  A   + + + 
Sbjct: 215 EELVGGHRARPDTEACARIYFAMN 238


>gi|302522606|ref|ZP_07274948.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302431501|gb|EFL03317.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 239

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 58/193 (30%), Gaps = 18/193 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D+  DR    A +R+D                        EA  I GI   +
Sbjct: 11  FDLETTGTDIEQDRIVTAAVIRLDASGAV---AHTRTWLLDPGVEIPAEATAIHGIPTAR 67

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A  DG         I +  +      T ++  N  R+D         R+   +       
Sbjct: 68  ARADGAPARGAVAEITEALAAELRAGTPLVVMNA-RYDLSLLDRECRRHGVPALAE--ML 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G     ++D +              +      S  L  L    G+    AHDA++D  A 
Sbjct: 125 GTEPAPVIDPLVLDKH---------ADRYRRGSRVLAALCAHYGVRLDTAHDARSDALAA 175

Query: 185 LALVWLIREKKPK 197
             L   +    P 
Sbjct: 176 TLLARSLGAHHPT 188


>gi|238026771|ref|YP_002911002.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1]
 gi|237875965|gb|ACR28298.1| DNA polymerase III, epsilon subunit [Burkholderia glumae BGR1]
          Length = 240

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 59/201 (29%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARAGDRIIEIGCVEM-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE ++ +  F       I   +N  FD  +      R          + 
Sbjct: 61  TEFLSDKPK-FAEIAQALCDFVRGGELII---HNAPFDIGFIDAELERLGMPPLLEHCNG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   ++++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKSMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180


>gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
           12442]
 gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
           12442]
          Length = 315

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 32/209 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D+ET G +   DR  Q A VR  R  E  +    F      +         +TGIT
Sbjct: 10  YVVIDFETTGFNPYNDRIIQVAAVRY-RNHELADQFVSF---VNPERFIPNRITSLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +  E       F        I  +N  FD  + ++                
Sbjct: 66  NYRVSDAPTI-QEVLPLFLAFL---GEDTIVAHNASFDMRFLKSNAKMLRLPEP------ 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D + + +                  A + KL+ L    GI    +H+A  D    
Sbjct: 116 KNIVIDTVFLAKRY-------------MKHARNHKLETLKRMLGIRLS-SHNALDDCITC 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            A+       + +          K  + +
Sbjct: 162 AAVYQKCAAIQEEG----QKKTKKETVEE 186


>gi|288800441|ref|ZP_06405899.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332654|gb|EFC71134.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 285

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 7/155 (4%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V++D ET G D+  DR  Q + ++V    ++ E   +F            E   +T IT
Sbjct: 9   LVVFDLETTGLDLVNDRIIQISYIKVHPDGKE-ERENLF---INPQKPIPQEVEALTHIT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE ++++++ F+       G+N+  FD       F R            
Sbjct: 65  NDMVKDAP-TFAEIAQKLYEKFT--GCDFAGFNSNHFDIPMLAEEFSRAGLSYDFSRSKL 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
            +++     + R   A +         +D   + +
Sbjct: 122 VDAQVIFHKMERRNLAAAYKFYCGRKMEDDFNAHR 156


>gi|330444105|ref|YP_004377091.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
 gi|328807215|gb|AEB41388.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
          Length = 249

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 26/187 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D E  G DV  DR  + A VR   +   ++S E        +     E+  I  I+
Sbjct: 9   FVCLDCEMTGLDVKKDRIIEIAIVRFTFE-RILDSIEFL---INPEKEVSIESQRIHHIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A    +I  F    +   I  +++ FD         R        ++  
Sbjct: 65  NAMLKNQPK-FAAVYPKIKAFLKDDDN--IVGHSVGFDLQVLAQEVERLG-----ETFPT 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + +                  + +  L+ LA+   + +   H A  DV   
Sbjct: 117 KYHVIDTLRLAK--------------EYGDSPNNSLESLAVHFNVPYDGNHRAMKDVEIN 162

Query: 185 LALVWLI 191
           +++   +
Sbjct: 163 ISIFKHL 169


>gi|163751714|ref|ZP_02158932.1| putative DNA polymerase III [Shewanella benthica KT99]
 gi|161328366|gb|EDP99525.1| putative DNA polymerase III [Shewanella benthica KT99]
          Length = 206

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 59/202 (29%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  +I D+ET G      DR  +   VR+ +    +++ +         +         T
Sbjct: 7   DSVIILDFETTGLSPNQGDRAIEIGAVRI-QDGIVVDTFQELM---NPGFRVSGFIAGYT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+          E E   R   F    N   +  +N  FD  +                
Sbjct: 63  GISNAMLANAAPCE-EVMARFADFIGNHN---LVAHNASFDQRFLDAELDAINL------ 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
              G      + + R +Y               A + KL  L     IE+    H A AD
Sbjct: 113 -SYGGEFACSMLIARRLY-------------QDAPNHKLGGLVEYKQIENDGVFHRALAD 158

Query: 181 VYATLALVWLIREKKPKLFEYL 202
              T  L  L+ +        L
Sbjct: 159 SEMTAKLWLLMLDDMRNEHSIL 180


>gi|99078640|ref|YP_611898.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99035778|gb|ABF62636.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 479

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 59/208 (28%), Gaps = 28/208 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV++D ET G  V  D   + A  RV      ++  EVF             +  I G+
Sbjct: 272 NFVVFDTETTGLSVTKDAIVELAAARV-LNGRILDG-EVFETYVDPGRPIPAASTKIHGV 329

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +   +EA      H F     + ++  +N  FD    R    +           
Sbjct: 330 RDADVAQSPRIEA-VIPAFHDF---AQSAVLVAHNAPFDIGLLRQQEVQTGCSW------ 379

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKADV 181
                  ++D +                   +    L  L     IE    + H AK D 
Sbjct: 380 ----DHPVVDTVLLSALVF----------GISADHSLDALCSRLSIEIPARHRHTAKGDA 425

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN 209
            AT   +  +           +    K 
Sbjct: 426 RATAEALIRLLPLLQGKGIETFGQLLKE 453


>gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 244

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V       +  +          +   DP A+ + G+T
Sbjct: 4   IILDTETTGLNPRTGDRLIEIGCV---ELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE   +I  F       I   +N  FD  +    F R     +      
Sbjct: 61  TEFLSDKPK-FAEVVDQIRDFVKGAELII---HNAPFDLGFLDAEFARLDLPPFTEHCGG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|328470587|gb|EGF41498.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus 10329]
          Length = 204

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 58/191 (30%), Gaps = 30/191 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G    L DR  +   V++    E ++S +         +         T
Sbjct: 5   NSVVVLDFETTGLSPTLGDRAIEIGAVKL-VDGEVVDSFQQLM---NPGFRVSSFIENYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT          E E      +F +  N   +  +N  FD  +      R         
Sbjct: 61  GITNNMLRIAPSCE-EVMASFSEFIAGEN---LIAHNASFDKRFLDAELERINCG----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKAD 180
                              F+   +        A S KL +L     I++    H A AD
Sbjct: 112 ---------------YSGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDGIFHRALAD 156

Query: 181 VYATLALVWLI 191
              T  L  L+
Sbjct: 157 AQMTAKLWLLM 167


>gi|302541826|ref|ZP_07294168.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459444|gb|EFL22537.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 239

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 61/192 (31%), Gaps = 17/192 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A V V R  E I   E      A +     +AV + GIT ++
Sbjct: 11  FDLETTGTDPRTARIVTAAVVEV-RGGEPIGRHEWLA---APEVPIPDDAVAVHGITNER 66

Query: 68  ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A   G    E +  I             +   N  FD         R+   S       G
Sbjct: 67  AA-AGRPIREVADEIADVLVAHWRAGAPVVAYNAAFDLSLLAAELDRHGLRSLG-ERLGG 124

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                ++D      A                   L+ +    G+ H  AH+A AD  A +
Sbjct: 125 APTGPVVDPYTIDRAV---------DRYRKGKRTLEAVCGEYGVAHERAHEAGADALAAV 175

Query: 186 ALVWLIREKKPK 197
            +   + E+  +
Sbjct: 176 RVACALAERHRE 187


>gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
          Length = 1442

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 112/387 (28%), Gaps = 40/387 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  + + +  ++I     FF KP  +   +     +T I
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +      + E     +I + F+  N  ++ +N I FD  +      +   +       
Sbjct: 465 NQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLEN--- 518

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
                 D L + RAI  F               S +L  +     +++ +  AH A  D 
Sbjct: 519 ---PSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239
                +  +++      FE +   +   +L+ L+         +          +    L
Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           ++       Y    I  +   + +        +    L   L++  D+    +   ++  
Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                P +    +     + +             L+     L        +  Y      
Sbjct: 679 DFITLPSIGSQKH---LVYAKKITLENVQKAFKKLVSLALELNKIIIYSSSPYYFLKDDK 735

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382
               +Y        +          P+
Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762


>gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315]
 gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315]
          Length = 244

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 62/207 (29%), Gaps = 27/207 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE + +I  F       I   +N  FD  +    F R     +      
Sbjct: 61  TEFLSDKPK-FAEVAHQILDFVKDAELII---HNAPFDLGFLDAEFARLGLPPFTEHCGG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKN 209
               +   +   +  L   + D  + +
Sbjct: 160 LLAEVYLAMTRGQDSLVIDMLDDASAD 186


>gi|73541877|ref|YP_296397.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134]
 gi|72119290|gb|AAZ61553.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 240

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + A  DR  +   V +            F+  P  D   D  A+ + GIT
Sbjct: 7   IVLDTETTGLNAATGDRLIEIGCVEL-VNRRLTGRHLHFYVNPERD--IDEGAIAVHGIT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    +  F       I   +N +FD  +    F       +R     
Sbjct: 64  VEFLADKPK-FAEVVNEVRDFVQDAELII---HNAQFDLGFLDMEFRLLGLPPFREHV-- 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             S  D L   R ++                    L  L    G+   H   H A  D  
Sbjct: 118 -GSVIDTLLEARQMFPG--------------KRNSLDALCDRLGVSNAHRTLHGALLDAE 162

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 163 LLAEVYLAMTRGQNSLVIDML 183


>gi|300691174|ref|YP_003752169.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
 gi|299078234|emb|CBJ50881.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
          Length = 242

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 57/201 (28%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + A  DR  +   V +            F+     +   D  A+ + GIT
Sbjct: 4   IVLDTETTGLNAATGDRVIEIGCVEL-VNRRLTGRNLHFY--INPEREIDAGAMAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    I  +       I   +N  FD  +    F R    S+R     
Sbjct: 61  NEFVADKPK-FAEIVAEIRDYVQGAEAII---HNAAFDLGFLDMEFQRLKLPSFREHLAG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   R ++                    L  L    G+   H   H A  D  
Sbjct: 117 ---HIDTLLEARRMFPG--------------KRNSLDALCDRLGVSNAHRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQNTLVIDML 180


>gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 707

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 53/189 (28%), Gaps = 27/189 (14%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + ++D ET G + A  D   Q    R+     ++   E F            ++V I G
Sbjct: 516 SYTVFDTETTGLEPAAGDEIIQIGATRIVN--RRLLQHEGFEQLIDPRRPLPEDSVKIHG 573

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITP+                  +       ++  +N  FD  + +               
Sbjct: 574 ITPEMLAGQP-PLDTVLPAFRAY---CADTVLVAHNAAFDMRFLQLKEASTG-------- 621

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +R         +          S +L+ +A   G+  +  H A  D  
Sbjct: 622 ------------VRFDQPVLDTLLLSAVLHPNQESHRLEAIAERLGVTIIGRHTAMGDAI 669

Query: 183 ATLALVWLI 191
            T  +   +
Sbjct: 670 VTGEVFLKM 678


>gi|241896118|ref|ZP_04783414.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241870632|gb|EER74383.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 970

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 58/203 (28%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + + + D ET        R  Q A   V +  + I                    V +T
Sbjct: 31  KDIYAVVDLETTRTTSESGRIIQIAIAFV-QNKKIINQFSTL---INPHESIPRNVVQLT 86

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI  +          E +  IH   +     I   +N+ FD  +    F R         
Sbjct: 87  GINAEMVAGAP-SFEEVAESIHTMLT---GTIFVAHNVNFDLPFLNAEFQRIGM------ 136

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D + + + ++               A  F+L DL     + H   H A +D 
Sbjct: 137 NTLNLVAIDTVTLSQIVW-------------PTAPGFRLVDLTSYLALVHGRPHQADSDA 183

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
            AT  L+  I  +   L      
Sbjct: 184 LATAELLIQIFNRLESLPMVTLQ 206


>gi|333030104|ref|ZP_08458165.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332740701|gb|EGJ71183.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 256

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 28/246 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +     E+  I
Sbjct: 5   LKNPIVFFDLETTGTNINSDRIVEICYLKVHPNGNE----ESKTLRINPEMPIPAESSAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E ++ I +      + + G+N+ RFD       F R        
Sbjct: 61  HGIFDEDIADCP-TFKEVAKNIAKDIE--GSDLAGFNSNRFDIPLLAEEFLRAG------ 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+  +   F    + +   +    S   +     N     +AH A+AD
Sbjct: 112 -----------VDIDLSKRKFVDVQVIFHKMEQRTLSAAYKFYCDKN---LEDAHSAEAD 157

Query: 181 VYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  + +  +        +  +     +    +     M    +   +F   +     
Sbjct: 158 TRATYEVLMAQLDRYDELKNDIAFLSDYSSYNNNVDLAGRMIFDENGVEVFNFGKYKGVP 217

Query: 240 IAPVAW 245
           ++ V  
Sbjct: 218 VSEVLQ 223


>gi|269968192|ref|ZP_06182223.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B]
 gi|269827190|gb|EEZ81493.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B]
          Length = 204

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 57/191 (29%), Gaps = 30/191 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G    L DR  +   V++    E ++S +         +         T
Sbjct: 5   NSVVVLDFETTGLSPTLGDRAIEIGAVKL-VNGEVVDSFQQLM---NPGFRVSSFIENYT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            IT          E E      +F +  N   +  +N  FD  +      R         
Sbjct: 61  SITNNMLRSAPSCE-EVMASFSEFIAGEN---LVAHNASFDKRFLDAELERI-------- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180
             N  S  +    +        +          A S KL +L    N       H A AD
Sbjct: 109 --NCGSSGEFACSLLVARRLIQE----------APSHKLGELVRYKNIDNDGVFHRALAD 156

Query: 181 VYATLALVWLI 191
              T  L  L+
Sbjct: 157 AQMTAKLWLLM 167


>gi|260753374|ref|YP_003226267.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552737|gb|ACV75683.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 234

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G      DR  +   V       K+E+   F C        D  A  I G++
Sbjct: 4   IVFDTETTGLSPINGDRLVEIGCV---ELINKVETGNSFHCYFNPQRPMDAVAESIHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    F+ +  +  S      +  +N  FD  +      +    +   +   
Sbjct: 61  DAFLADKPL----FADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRM- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L + R  +  +                 L  L    GI+  H   H A  D  
Sbjct: 116 ----VDTLAIARGKHPGA--------------KHTLDALCTRYGIDRSHRVKHGALLDAE 157

Query: 183 ATLALV 188
               L 
Sbjct: 158 LLAQLY 163


>gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 1442

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 111/387 (28%), Gaps = 40/387 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  + + +  ++I     FF KP  +   +     +T I
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +      + E     +I + F+  N  ++ +N I FD  +      +   +       
Sbjct: 465 NQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLEN--- 518

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
                 D L + RAI  F               S +L  +     +++ +  AH A  D 
Sbjct: 519 ---PSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239
                +  +++      FE +   +   +L+ L+         +          +    L
Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           ++       Y    I  +   + +        +    L   L++  D+    +   ++  
Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                P +    +     + +             L+              +  Y      
Sbjct: 679 DFITLPSIGSQKH---LVYAKKITLENVQKAFKKLVSLALESNKLIIYSSSPYYFLKDDK 735

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382
               +Y        +          P+
Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762


>gi|86130781|ref|ZP_01049380.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
 gi|85818192|gb|EAQ39352.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
          Length = 1463

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 95/327 (29%), Gaps = 33/327 (10%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D   + I   + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPKNWNAPITDSDNWPRCIQIAWQLHDEMGQVI-EHQDYLVKPDGFDIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+   A +DGV  +E     +   S      +   N+ FD       F+R  
Sbjct: 61  -DAERIHGISTALAEKDGVALSEVLENFNIALSQAK--YVVGQNVGFDTNIMGAEFHRL- 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
                    N  +    L V+      +    Q P    G   FKL  L        G  
Sbjct: 117 ---------NIGNDLQELPVLDTCTEKTATLCQLPGGRGGK--FKLPTLTELHKHLFGEG 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
              AH+A ADV AT        E   +      +   +          N  P+  +    
Sbjct: 166 FGEAHNATADVEAT---TRCFLELIRQRVYTKEELDVQPDYFDRFSQANPQPIEFIGLKH 222

Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290
              +  +  IA           +    L  +     ++    L      S  +    V  
Sbjct: 223 INLKKASERIAKKLAAQNEAPEISQTELEDNAAKLSEVKFAHLHNHSQFSILQSTASVQD 282

Query: 291 PIKEVHLNKCPILMPIDYCKKEHFERW 317
            +K     K P +   D         +
Sbjct: 283 IVKAAAAQKMPAVAMTDMGNMMGAFHF 309


>gi|329114274|ref|ZP_08243036.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
 gi|326696350|gb|EGE48029.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
          Length = 224

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 55/191 (28%), Gaps = 30/191 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    + +D ET G D A  DR  + A + +            F      +     EA  
Sbjct: 1   MKRSIL-FDTETTGLDPATGDRVIEIAALELVGDL-PTGR--TFHKLIDPERDVPEEASR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + G T           AE +     F +      +  +N RFD  +      R    +  
Sbjct: 57  VHGFTRADLEGKPK-FAEVAD---DFLAFVGDDPLIAHNARFDFGFMNAELKRAGKKTL- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
                 +   D LD+ R  +   P+               L  L    G++      H+A
Sbjct: 112 ----GLDRMVDTLDMARERFPGMPN--------------SLDALCRRFGVDLSARTTHNA 153

Query: 178 KADVYATLALV 188
             D      + 
Sbjct: 154 LLDCKLLADVY 164


>gi|228914217|ref|ZP_04077833.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845421|gb|EEM90456.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 927

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 63/198 (31%), Gaps = 29/198 (14%)

Query: 9   DYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           D ET G       D+  Q A V V    E +E    F           P    +TGI   
Sbjct: 2   DLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFITELTGIDES 57

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
              +  + E + +  + +            +N+ FD  +      +  Y           
Sbjct: 58  MVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNFLTEELRQAGYTEIH------C 107

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
            + D +++ +                  A S+KL+DLA  + +EH   H A +D  AT  
Sbjct: 108 PKVDTVELAQI-------------LLPTADSYKLRDLAKQHELEHDQPHRADSDALATAE 154

Query: 187 LVWLIREKKPKLFEYLYD 204
           L      +  KL      
Sbjct: 155 LFLQFLNEIEKLPLVTLQ 172


>gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
 gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
          Length = 623

 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 60/182 (32%), Gaps = 28/182 (15%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     DR    A + +D +  +                P P  V I G+TP +
Sbjct: 35  VDVETSGLRPGRDRVLSLAILTLDARGNQTGEFATL---LNPGCDPGP--VHIHGLTPAR 89

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                  E E + ++    S     ++  +N +FD  +  + F          SW   + 
Sbjct: 90  LAGAPTFE-EIAPQVGALLS---GRVLVAHNAQFDYDFLAHEFAHV------RSWVPVSR 139

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
           R   L + R +                    KL  LA   G+    AHDA+ DV     +
Sbjct: 140 RLCTLALNRLV-------------GSATPDLKLGTLAAHYGVRQERAHDAQDDVRVLSGI 186

Query: 188 VW 189
           + 
Sbjct: 187 LR 188


>gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 1571

 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 26/191 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + AGV++ ++  KI   + F                IT I
Sbjct: 480 TYVVFDLETTGLSNVRDKIIEIAGVKI-KKGNKIGEFQKF---IDPQQKLTKTITDITNI 535

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       ++    + + QF +    C++  +N  FD          NF         
Sbjct: 536 TDEMLQGQQTID----QVLPQFLAFAKDCVLVAHNASFDI---------NFLKEKAKELK 582

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++D M     +  + +++         F L+ LA    ++  + H A AD  A
Sbjct: 583 ISLEPQPIIDTMALSQRYFSNLLKY---------FSLKRLATFFKVKLEDHHRALADATA 633

Query: 184 TLALVWLIREK 194
           T  +   + ++
Sbjct: 634 TAEIFIKMIDQ 644


>gi|323694146|ref|ZP_08108325.1| DNA polymerase III subunit epsilon [Clostridium symbiosum
           WAL-14673]
 gi|323501863|gb|EGB17746.1| DNA polymerase III subunit epsilon [Clostridium symbiosum
           WAL-14673]
          Length = 226

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 58/204 (28%), Gaps = 28/204 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V  D ET G D   D+  +   V V    E  E+   F          D     +TG
Sbjct: 24  DSYVAIDLETTGLDPKHDKIIEIGAVLV-IDGEIKETFSTF---VNPRRELDGRIRELTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          +    I +         +  ++I FD  + +               
Sbjct: 80  ITGEMTAGAP----DIGDVIGRVVEFCRDLPLLGHHIIFDYSFLKRAAVNKGL------- 128

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               S  D L + R                       L++ +   GI+  +AH A AD  
Sbjct: 129 VFEKSGIDTLTLCRRF-------------MPEEEKKNLENASRYYGIKQTDAHRALADAL 175

Query: 183 ATLALVWLIREKKPKLFEYLYDYR 206
               L   ++          +  +
Sbjct: 176 TAHLLYRNVKRSHFSSAPEAFRCK 199


>gi|221201955|ref|ZP_03574991.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221204915|ref|ZP_03577932.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221213892|ref|ZP_03586865.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166069|gb|EED98542.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221175772|gb|EEE08202.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221178038|gb|EEE10449.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 244

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARTGDRIIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE + +I  F       I   +N  FD  +    F       +      
Sbjct: 61  TEFLSDKPK-FAEIAHQILDFVKGAELII---HNAPFDLGFLDAEFALLGLPPFSEHCAG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|325954953|ref|YP_004238613.1| DNA polymerase III subunit alpha [Weeksella virosa DSM 16922]
 gi|323437571|gb|ADX68035.1| DNA polymerase III, alpha subunit [Weeksella virosa DSM 16922]
          Length = 1463

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 30/203 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D     +   + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPKDWNAPITDSDNWPRCIQIAWQLHDELGNLV-EHQDYLVKPDGFDIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            ++  I GI+   A   GV   E   +  +  +   T  I   N+ FD       FYR  
Sbjct: 61  -DSERIHGISTALATEQGVPLEEVLDKFQKALAK--TKFIVGQNLGFDINIMAAEFYRKG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            ++          + D L V+      + + ++ P    G   +KL  L         + 
Sbjct: 118 VEN----------KLDQLPVLDTCTETTAELLKLPGGRGGR--YKLPTLTELHEFLFQVP 165

Query: 171 HVNAHDAKADVYATLALVWLIRE 193
              AH+A ADV AT    + +  
Sbjct: 166 FSEAHNATADVEATARCFFELIR 188


>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 328

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 28/184 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            + D ET G      R    A + +      +E              P P  V I G+TP
Sbjct: 17  TVVDVETSGLRPDRHRVLSLAVLTLRPDGHLVEEFSTL---LDPGCDPGP--VHIHGLTP 71

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++           + R+ +  S     ++  +N  FD  +  + F R             
Sbjct: 72  ERLRGAP-TFDRVAERVAELLS---GRVMVAHNAAFDYAFLAHEFGRAGLHLPVEQ---- 123

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
             R   L + R                      +L  LA   G+    AHDA  D     
Sbjct: 124 --RLCTLALGR-------------RIGLPTPDLRLSTLAAHYGVPQHRAHDALDDARVLA 168

Query: 186 ALVW 189
            ++ 
Sbjct: 169 GVLR 172


>gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 1442

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 112/384 (29%), Gaps = 34/384 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  + + +  ++I     FF KP  +   +     +T I
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +      + E     +I + F+  N  ++ +N I FD  +      +   +       
Sbjct: 465 NQEMVNDA-IDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLEN--- 518

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
                 D L + RAI  F               S +L  +     +++ +  AH A  D 
Sbjct: 519 ---PSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239
                +  +++      FE +   +   +L+ L+         +          +    L
Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621

Query: 240 IAPVAWHPRYKDSVIGCN-LSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
           ++       Y    I  + L+         +SV  +  +   + +    +   ++     
Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSNDEIKSIMQRYDFI 681

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
             P +    +     + +             L+     L        +  Y         
Sbjct: 682 TLPSIGSQKH---LVYAKKITLENVQKAFKKLVSLALELNKIIIYSSSPYYFLKDDKKFY 738

Query: 359 QLYDGFFADVDRQIMDRILRTAPE 382
            +Y        +          P+
Sbjct: 739 DVYVNTKGLEGKSHRFANEEYVPD 762


>gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
          Length = 305

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 65  IILDTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 121

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE + +I  F       I   +N  FD  +    F R     +      
Sbjct: 122 TEFLSDKPK-FAEVAHQILDFVKDAELII---HNAPFDLGFLDAEFARLGLPPFTEHCGG 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 178 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 220

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 221 LLAEVYLAMTRGQDSLVIDML 241


>gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU
           1054]
 gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia
           HI2424]
 gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
          Length = 244

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE + +I  F       I   +N  FD  +    F R     +      
Sbjct: 61  TEFLSDKPK-FAEVAHQILDFVKDAELII---HNAPFDLGFLDAEFARLGLPPFTEHCGG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 244

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE + +I  F       I   +N  FD  +    F R     +      
Sbjct: 61  TEFLSDKPK-FAEVAHQILDFVKDAELII---HNAPFDLGFLDAEFARLGLPPFTEHCGG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|153808235|ref|ZP_01960903.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185]
 gi|149129138|gb|EDM20354.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185]
          Length = 259

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 82/256 (32%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +   T     +   +      +  +
Sbjct: 5   LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTL----RINPEMHIPEASSAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E ++ I +        + G+N+ RFD       F R        
Sbjct: 61  HGIYDADVADCP-TFKEVAKNIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+  +   F    + +   +    S   +     N     +AH A+AD
Sbjct: 112 -----------VDIDMSKRKFVDVQVIFHKMEQRTLSAAYKFYCEKN---LEDAHTAEAD 157

Query: 181 VYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  ++    ++ P    +  +     +  + +     M    + + +F   +     
Sbjct: 158 TRATYEVLKAQLDRYPDLQNDIAFLADYSSFSKNVDFAGRMVYDDNGTEVFNFGKYKGMS 217

Query: 240 IAPVA-WHPRYKDSVI 254
           +A V    P Y   ++
Sbjct: 218 VAEVLKKDPGYYSWIL 233


>gi|114766856|ref|ZP_01445783.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114540977|gb|EAU44036.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseovarius sp. HTCC2601]
          Length = 401

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 6/114 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   Q   VRV                        P +  +  +
Sbjct: 276 SYTVFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVMDQLV--DPGIPIPPSSTKVHQV 333

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           +         + AE  RR H+F       +I  +N  FD  + R    R   + 
Sbjct: 334 SDAMVRGQPDI-AEAGRRFHRF---AKGSVIVAHNAPFDMAFLRRHRNRMGVEW 383


>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 63/189 (33%), Gaps = 25/189 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G D   DR  +   V +    +   + +VF C   +     PEA+ + GIT 
Sbjct: 10  IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALKLHGITD 67

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         +        FF+  N   I +N   FD  +      R   D       + 
Sbjct: 68  EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPL-----DP 120

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVYA 183
           +   D L + R  +               ++   L  L    G  I H + H A  D + 
Sbjct: 121 SRIIDTLSIARRKHP--------------SSRNDLNSLCKRYGITISHRSKHGALLDSHL 166

Query: 184 TLALVWLIR 192
              +   + 
Sbjct: 167 LSDVYIKMM 175


>gi|163787973|ref|ZP_02182419.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1]
 gi|159876293|gb|EDP70351.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1]
          Length = 258

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 75/256 (29%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G +++ DR  + + ++V    ++             +     E   I
Sbjct: 5   LTKPICFFDLETTGINISKDRIVEISILKVHPNGKE----NTKTWVVNPEMPIPAEVTAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+            E S+ I+      +  + G+N+ RFD         R   D    
Sbjct: 61  HGISDADVADKP-TFKELSKEIYNLIKDSD--LGGFNSNRFDIPLLAEEMLRADIDFD-- 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
               G    D+  +             +   +    S   +     N     +AH A+AD
Sbjct: 116 --MKGMQSIDVQTI-------------FHKMEQRTLSAAYKFYCDKN---LDDAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239
             AT  ++     K   L          +  +K  D              F   +     
Sbjct: 158 TKATYEVLKAQLSKYEDLENDTKFLAEFSSRKKFADFAGFLIFNKQGEECFSFGKHKGKR 217

Query: 240 IAPVA-WHPRYKDSVI 254
           +  V    P Y   ++
Sbjct: 218 VVDVMEQEPGYFGWLL 233


>gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinnamea P4]
 gi|319435472|gb|EFV90709.1| DNA polymerase III [Dietzia cinnamea P4]
          Length = 313

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 51/183 (27%), Gaps = 28/183 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G   A+DR    A V +    E +E              P P  V + G+TP
Sbjct: 5   VVVDVETSGMTPAVDRVLSVAAVVIGDDGEVVEEFATL---LNPGVDPGP--VHVHGLTP 59

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                     ++ +  + +     +   +  +N  FD  +      R             
Sbjct: 60  ALLAGKPR-FSDVAAELGRVL---DGRTVVAHNAAFDASFLAAEARRAGLAPPLE----- 110

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                          F                 KL  LA   G+    AHDA  D  A  
Sbjct: 111 --------------RFVCTLDFAGRLHLSTADLKLSTLAAHFGVRQRAAHDAHDDALALA 156

Query: 186 ALV 188
            + 
Sbjct: 157 GVF 159


>gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 502

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 52/198 (26%), Gaps = 29/198 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G     +   +   V+VD     +                      +TGI 
Sbjct: 12  LAFVDIETTGGPAQRESITEIGIVQVDEDG--VREWSTL---VRPASRIPETIQRLTGID 66

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E + +  +   F   +  +   +N RFD  + R  F R   D        
Sbjct: 67  DDMVADAPRFE-DIADEV---FDRLDGRLFVAHNARFDHGHLRAAFRRAGLDM------- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R  +L  ++      PD               L  L   +G+   + H A  D    
Sbjct: 116 ---RPQVLCTVKLSRRLFPDH----------RRHGLDHLIERHGLAVADRHRALGDARLL 162

Query: 185 LALVWLIREKKPKLFEYL 202
                 I E+ P      
Sbjct: 163 WQFWQKIHERFPPGHIDA 180


>gi|186475632|ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184192091|gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 249

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 59/209 (28%), Gaps = 27/209 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARTGDRIIEIGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE +  +  F       I   +N  FD  +    F       +      
Sbjct: 61  TEFLSDKPK-FAEIADTLRDFIQDAELII---HNAPFDIGFLDAEFALLGLPPFS---QY 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   ++++                    L  L    GI   H   H A  D  
Sbjct: 114 CGEVIDTLVRAKSMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L   +      +  
Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGETAADDA 188


>gi|326335188|ref|ZP_08201385.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692718|gb|EGD34660.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 273

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 35/233 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G DV+ DR  + + ++V        S E               +  I
Sbjct: 21  LTRPICFFDLETTGTDVSKDRIVEISILKVFPNG----SRESKTWLVNPTIPIPAASTDI 76

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +   +      E +++IH      +  + GYN+ RFD         R   D    
Sbjct: 77  HGISDKMVAQAP-TFKELAKQIHNLIKDSD--LAGYNSDRFDIPLLAEELLRAGVD---- 129

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +DL + +          ++  +       +  + L         NAH A+AD
Sbjct: 130 --------FDLKNRVTVDVQTIFHKMEQRTLSAAYKFYCKKSL--------DNAHSAQAD 173

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
             AT  ++    +         Y     N +++L D      +   +G    +
Sbjct: 174 TDATYEILKAQLD--------CYSDTLPNDVKQLSDFTTRKQIADFAGFIAYN 218


>gi|86144205|ref|ZP_01062541.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Leeuwenhoekiella blandensis MED217]
 gi|85829335|gb|EAQ47801.1| probable DNA-directed DNA polymerase III  (epsilon subunit)
           [Leeuwenhoekiella blandensis MED217]
          Length = 458

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 58/193 (30%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D   + ++           +       V +TGI 
Sbjct: 2   YAILDLETTGGKYNEEGVTEVAIYKFDGH-KVVDQFISL---VNPERPIQAFVVGLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E ++RI +       CII  +N +FD    +  F R  YD        
Sbjct: 58  NAMLRNAPK-FYEVAKRIIEITQD---CIIVAHNAQFDYRILQLEFDRLGYD-------- 105

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                        G  S+ L  L    GI   + H A  D  AT
Sbjct: 106 ------------YQRKSLCTVELAQELLPGQESYSLGKLVRNLGIPITDRHRANGDALAT 153

Query: 185 LALVWLIREKKPK 197
           + L  L+  K  K
Sbjct: 154 VKLFKLLLAKDSK 166


>gi|317128618|ref|YP_004094900.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473566|gb|ADU30169.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 922

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 71/221 (32%), Gaps = 28/221 (12%)

Query: 2   TNHFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              FVI D ET G   +  DR  Q A V ++ + + I+    +           P    +
Sbjct: 1   MERFVIVDVETTGVSFIKGDRIIQIAFVVIEGK-KIIDRFNSY---VNPMRDIPPFIRSL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T I   +           + R+ Q     +      +N+ FD  +     +   Y     
Sbjct: 57  TNINDNEVKDAP-TFDLVAPRLLQAL---DGAFFVAHNVDFDLSFINEELHALGYTGL-- 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +++ +  Y  +               F+L  L+ +  + H   H A +D
Sbjct: 111 ----SGPVIDTVELSKIAYPTADG-------------FRLSQLSESLHMNHDQPHRADSD 153

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
             AT  +   I +K   L +      N    +   DI ++ 
Sbjct: 154 AEATALIFLEIMDKLYHLPKQTLIELNNLSTKLKSDIGSII 194


>gi|213691637|ref|YP_002322223.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523098|gb|ACJ51845.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 211

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 53/194 (27%), Gaps = 28/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G         +   VRV R+   ++  +              +   +TGIT
Sbjct: 10  YVALDLETTGFYPNSCAITEIGAVRV-RKGHIVDQFQQL---VNPLRPIPRQITTLTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
                       +   R   + + P        I  +N+ FD  +          D    
Sbjct: 66  DAMVADLD-PIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRF---------LDYNTR 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                       D M+   A  P               +L DL +  GI     H A +D
Sbjct: 116 HIAGCGFACADYDTMQISRALFPAQRH----------HRLADLIVRFGIADNEEHRALSD 165

Query: 181 VYATLALVWLIREK 194
              T      +R  
Sbjct: 166 AIQTQQCFEWMRHY 179


>gi|325103921|ref|YP_004273575.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145]
 gi|324972769|gb|ADY51753.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145]
          Length = 459

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 55/200 (27%), Gaps = 28/200 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            ++ I D ET G      R  + A V +    + +E                     +TG
Sbjct: 5   KNYAIVDIETTGAYAGGSRMTEIA-VLIHDGVQVVEEYHTL---INPKQSIPHYIQVLTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+          E   + ++          I   +N+ FD  +  +      Y       
Sbjct: 61  ISDDMVSDAPEFEN-VAAKVFSLLQDK---IFVAHNVGFDYSFVHSQLRECGYY------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   L  +R                 G  S+ L  L  + GI   + H A  D  
Sbjct: 111 ----LRSPKLCTVRLSRKCF----------PGLPSYSLGKLCQSLGIAINDRHRAYGDAR 156

Query: 183 ATLALVWLIREKKPKLFEYL 202
           AT  L   I     +    L
Sbjct: 157 ATAVLFGRILSADNEGHIQL 176


>gi|328479965|gb|EGF49008.1| DNA polymerase III PolC [Lactobacillus rhamnosus MTCC 5462]
          Length = 132

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 8/117 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  + A V++ +  + I+  E         +      + +T IT
Sbjct: 13  YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEE---MIDPGFPLSELTINLTHIT 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
                     E E  R   QF    +  I+  +N+ FD  +  N + R+        
Sbjct: 69  DDMVHGS-KSEEEVFRLFQQF---CDGAIMVGHNVTFDVGFLDNGYERHGLADIDNP 121


>gi|114706065|ref|ZP_01438968.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
 gi|114538911|gb|EAU42032.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
          Length = 242

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 27/185 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G D  +DR  +  GV +         T   + +PA     DP A  + GI+ 
Sbjct: 4   IVFDTETTGLDNTIDRVIEIGGVELW-NHIPTGKTYHQYIRPA-GRKVDPAAFDVHGISD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +  L   + E E +     FFS      +  +N  FD  +      R  +          
Sbjct: 62  EFLLDKPLFE-EIADEFVAFFSDAK---LIAHNANFDIGFLNAELQRLRHPPIE-----P 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183
           +   D L + R  +  +P                L  L     ++      H A  D   
Sbjct: 113 SLVIDTLAMARRKFPMAPA--------------SLDALCSRFAVDTSKREKHGALLDSEL 158

Query: 184 TLALV 188
              + 
Sbjct: 159 LADVY 163


>gi|86131778|ref|ZP_01050375.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
 gi|85817600|gb|EAQ38774.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
          Length = 257

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 27/198 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D ET G +VA DR  + + ++V     +    E F  +             + GI+
Sbjct: 9   ICFFDLETTGVNVAKDRIVEISILKVFPDGRE----EEFTERINPTVPIPAVTTAVHGIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE ++ I+      +  + G+N+ RFD         R+  D        
Sbjct: 65  DADVADKP-TFAERAKEIYDIIKDSD--LAGFNSNRFDIPLLVEELLRSGID-------- 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   D+         +      +     ++K          +  NAH A AD +AT
Sbjct: 114 -------FDMKNRNAIDVQNIFHKMEQRTLVAAYKF-----YCDKDLTNAHSASADTWAT 161

Query: 185 LALVWLIREKKPKLFEYL 202
             ++    ++  +L   +
Sbjct: 162 YEVLKSQLDRYDELENDM 179


>gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein
            [Corynebacterium matruchotii ATCC 14266]
 gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein
            [Corynebacterium matruchotii ATCC 14266]
          Length = 2479

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 54/188 (28%), Gaps = 28/188 (14%)

Query: 4    HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             + + D ET G   A DR  + A V +D   E +                   A  I GI
Sbjct: 2084 TYAVVDVETTGFSTA-DRIVELAIVVLDDDGENLYEWSTL---INPMRDISNGA--IHGI 2137

Query: 64   TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            T +          + +  +          I   +N  FD    ++ F R           
Sbjct: 2138 TAKDVAVAP-TFDQVADDVAALLE---GKIFVAHNAIFDVRMLKSEFDRVGL-------- 2185

Query: 124  NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                       M  +     D ++        +S  L       GI +  AH A +D  A
Sbjct: 2186 ----------KMAGLADGHIDTLRLAQNSLPISSRSLDSCLAFMGITNEQAHSALSDARA 2235

Query: 184  TLALVWLI 191
            T  L+   
Sbjct: 2236 TGRLLTRF 2243


>gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
            33806]
 gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
            33806]
          Length = 2493

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 54/188 (28%), Gaps = 28/188 (14%)

Query: 4    HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             + + D ET G   A DR  + A V +D   E +                   A  I GI
Sbjct: 2098 TYAVVDVETTGFSTA-DRIVELAIVVLDDDGENLYEWSTL---INPMRDISNGA--IHGI 2151

Query: 64   TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            T +          + +  +          I   +N  FD    ++ F R           
Sbjct: 2152 TAKDVAVAP-TFDQVADDVAALLE---GKIFVAHNAIFDVRMLKSEFDRVGL-------- 2199

Query: 124  NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                       M  +     D ++        +S  L       GI +  AH A +D  A
Sbjct: 2200 ----------KMAGLADGHIDTLRLAQNSLPISSRSLDSCLAFMGITNEQAHSALSDARA 2249

Query: 184  TLALVWLI 191
            T  L+   
Sbjct: 2250 TGRLLTRF 2257


>gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily
           [Capnocytophaga sputigena Capno]
 gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily
           [Capnocytophaga sputigena Capno]
          Length = 1485

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 71/204 (34%), Gaps = 30/204 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     I   + F  KP    +P 
Sbjct: 2   YLIFDTETTGLPRRWDAPLTDSDNWPRAVQIAWQLHDEWGALI-EHQDFLIKPDGFDVPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  + GI+ Q A   GV  AE  +  ++  S      +   NI FD       F+R  
Sbjct: 61  -DAEKVHGISTQLAETQGVPIAEVFKAFNEALSKAK--YVVGQNIGFDINIMGAEFHRYG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            +          S    + V+      + +  Q      G   +KL  L        G+ 
Sbjct: 118 VE----------SPLTQMPVIDTCTETTANLCQIAGGKGGR--YKLPTLTELHSFLFGVP 165

Query: 171 HVNAHDAKADVYATLALVWLIREK 194
              AH+A ADV AT    + +  +
Sbjct: 166 FAEAHNATADVEATTRCFFELIRR 189


>gi|149371249|ref|ZP_01890735.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49]
 gi|149355387|gb|EDM43946.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49]
          Length = 257

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++     +D ET G ++A DR  + A ++V     K    E F  K             I
Sbjct: 5   LSKPICFFDLETTGINIAKDRIVEIAILKVFPNGNK----ESFVWKVNPTIPIPKVTSDI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            GIT +  + +     E + ++       +  + G+N+ RFD         R   D
Sbjct: 61  HGITDEMVVNEP-TFKELAPKVFALIKDSD--LAGFNSNRFDIPLLAEELLRAEID 113


>gi|71279381|ref|YP_267529.1| exonuclease [Colwellia psychrerythraea 34H]
 gi|71145121|gb|AAZ25594.1| exonuclease [Colwellia psychrerythraea 34H]
          Length = 203

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 30/198 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  +I D+ET G      DR  +   V++       +  +                   T
Sbjct: 4   NSLIILDFETTGLSPDNGDRAIEIGAVKL-ENGVVTDRFQELMY---PGRPVSHFIADYT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT     +      E   R   F    N   +  +N  FD  +  +   R        S
Sbjct: 60  GITNVMLSKAAPCH-EVMDRFSGFIQGQN---LVAHNASFDKRFLDSELKR------ISS 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKAD 180
             +G     LL   R                  A + KL  L    GI  + + H A  D
Sbjct: 110 GYDGQFACSLLLSRR--------------LYQTAPNHKLGTLINYKGIASNGSFHRALYD 155

Query: 181 VYATLALVWLIREKKPKL 198
              T  L   + +   + 
Sbjct: 156 SEMTAKLWVAMLDDIQQQ 173


>gi|17988635|ref|NP_541268.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984439|gb|AAL53532.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 272

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 14  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 73

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I +        II  +N  FD  +                  
Sbjct: 74  TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 110 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 163

Query: 184 TLALVW 189
            LA++ 
Sbjct: 164 LLAVLK 169


>gi|325288090|ref|YP_004263880.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324323544|gb|ADY31009.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 447

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 71/246 (28%), Gaps = 35/246 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   + I D ET G     ++  + +  + D   + ++           + +       +
Sbjct: 1   MM--YTIIDVETTG---QTNKITEISIFKFDGD-KVVDEFTSL---VNPEDVIPYYITTL 51

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI            AE ++++          I   +N+ FD    RN F     D    
Sbjct: 52  TGIDNAMVANAP-TFAEIAQQVLDITED---TIFVAHNVNFDYNVIRNEFKAVDKD---- 103

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R   L  +R                 G  S+ L  L     I     H A+ D
Sbjct: 104 ------FRRKKLCTVRLSRKLL----------PGHNSYSLGKLCKDLDIAIEGRHRARGD 147

Query: 181 VYATLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
             AT+ L  ++  K+    +F       +K           +   +  +      ++   
Sbjct: 148 AEATVTLFKILVNKEGSETVFNSFLKKTSKEGTLPSHLPTEVFNKIPNTPGIYYFKNKKG 207

Query: 239 LIAPVA 244
            I  + 
Sbjct: 208 KIIYIG 213


>gi|239623211|ref|ZP_04666242.1| DNA polymerase III subunit epsilon [Clostridiales bacterium
           1_7_47_FAA]
 gi|239522177|gb|EEQ62043.1| DNA polymerase III subunit epsilon [Clostridiales bacterium
           1_7_47FAA]
          Length = 240

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 28/203 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MTN ++  D ET G +   ++  + A ++V       +    F                +
Sbjct: 1   MTNSYIALDLETTGLEPKQEKITEIAALKV-VDGVISQRYVTF---VNPGRSLGAYITQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT         +E      I           +  +NIRFD  + ++       +    
Sbjct: 57  TGITDGMLADAPPIE----ELIEDVVKFCGDLPLLGHNIRFDYSFLKHAAVNRRLEF--- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + RA                G T   L        +    AH A+AD
Sbjct: 110 ----EREGIDTLTLCRAF-------------MTGETRKNLSCACSYFHVPQSTAHRAQAD 152

Query: 181 VYATLALVWLIREKKPKLFEYLY 203
             A   L   +  +  +    ++
Sbjct: 153 AEAAHLLYQELMSRHGQDQPSMF 175


>gi|167041229|gb|ABZ05986.1| putative exonuclease [uncultured marine microorganism
           HF4000_001N02]
          Length = 299

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 58/193 (30%), Gaps = 26/193 (13%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D   DR  Q+A +  D       S                 A  I GI+ + 
Sbjct: 42  FDLETTGLDARKDRIVQYALIGSDVDG----SHINLASLVDPRRGIPTAASRIHGISEED 97

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
               G  E      I +     +  I+G+N   FD  +      R   ++         +
Sbjct: 98  VRGVGSFETHV-GAISELIE--DAVIVGHNISNFDWRFLELECMRAGVETPI-----PRA 149

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D   + R +                     L  L     I    AH A AD  A+L L
Sbjct: 150 IVDTYSLARKLRI--------------PGRRTLGVLCARYDISIGRAHSADADAGASLLL 195

Query: 188 VWLIREKKPKLFE 200
           +W +    P  F 
Sbjct: 196 LWSMMHSHPAEFR 208


>gi|161525206|ref|YP_001580218.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|189350055|ref|YP_001945683.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342635|gb|ABX15721.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189334077|dbj|BAG43147.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 244

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARSGDRIIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE + +I  F       I   +N  FD  +    F       +      
Sbjct: 61  TEFLSDKPK-FAEIAHQILDFVKGAELII---HNAPFDLGFLDAEFALLGLPPFSEHCAG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|219669053|ref|YP_002459488.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
           hafniense DCB-2]
 gi|219539313|gb|ACL21052.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
           hafniense DCB-2]
          Length = 929

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 32/189 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V+ D ET G D+  D   +FA + ++      E  E F    +         + +TGI
Sbjct: 5   KIVVIDIETTGFDIYNDEIIEFAALCIEEG----EEAEAFSVLISPRRQVPERILRLTGI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +P++  + G     +  +I   F      II  +N+ FD  +       +F         
Sbjct: 61  SPEELKQAG-SLQAYRDKILDLFQD---AIIVGHNVEFDLGFLEQALTIHF--------- 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVY 182
             N+ WD L++ R +Y                  +KL DL  + G      AH A  D  
Sbjct: 108 -ENTLWDTLEIARILY-------------PNMPKYKLGDLTKSLGLTPLEKAHRALFDAR 153

Query: 183 ATLALVWLI 191
           A   L+   
Sbjct: 154 AAWELLQAC 162


>gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22]
 gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces scabiei 87.22]
          Length = 613

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 28/182 (15%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     DR    + + +D Q  +             D  P P  V + G+T  +
Sbjct: 22  VDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTL---LNPDCDPGP--VHVHGLTADR 76

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                  E E + ++    S     ++  +N +FD  +  + F +        SW   + 
Sbjct: 77  LAGAPAFE-EIAPQVGALLSSR---VLVAHNAQFDYDFLAHEFAQV------RSWAPVSR 126

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
           R   L + R +                    KL  LA   G+    AHDA+ DV     +
Sbjct: 127 RLCTLALNRLV-------------GPATPDLKLGTLAAHYGVRQEKAHDAQDDVRVLSGI 173

Query: 188 VW 189
           + 
Sbjct: 174 LR 175


>gi|163791070|ref|ZP_02185490.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Carnobacterium sp. AT7]
 gi|159873626|gb|EDP67710.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Carnobacterium sp. AT7]
          Length = 939

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 28/194 (14%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + + + D ET G +VA  DR  QF  V ++   + +                  +   +
Sbjct: 4   KDTYAVVDIETTGGNVASGDRMIQFGCVLLEGD-QVVHRFAT---NINPLTSIPKQIEHL 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TG++ +   +    E + +  I+      + CII  +NI+FD  +      R    + + 
Sbjct: 60  TGLSNKTVAQAPYFE-DIAATIYNLL---DGCIIIAHNIQFDYTFLSAELQRCGMPALQN 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +++ +                   +S++L DL     IEH N H A +D
Sbjct: 116 ------KGIDTVELAQV-------------LLPTESSYRLNDLVSKFNIEHTNPHQADSD 156

Query: 181 VYATLALVWLIREK 194
              T  L  ++++K
Sbjct: 157 AAVTAELFLVLKQK 170


>gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma
           urealyticum
 gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
          Length = 1442

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/378 (14%), Positives = 105/378 (27%), Gaps = 40/378 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  V + +  ++I     FF KP      +     +T I
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAV-IMQNNKQIGEKIQFFIKPI--QQINENVTNLTNI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      + E     +I + F      ++ +N I FD  +      +   +       
Sbjct: 465 SQEMVNNA-IDEKTALLKIKEIFDDH--ILVAHNGINFDINFINQRLLKWGLEPL----- 516

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181
             N   D L + RAI  F               S +L  +           +AH A  D 
Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDESAHRADYDA 561

Query: 182 YATLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
                +  +++      F    L +   K Q   L +      +          +    L
Sbjct: 562 IVLADVFKVMKNNLFNDFGITNLSEINTKLQTTMLKNRSFGNWINLYIKNQANVKDMYEL 621

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           ++       Y    I  +   + +        +    L   L++ +DE    +   I+  
Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSIHESDLINALYSKNDE---EIKRLIQRY 678

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                P L    +     + +             L+     L        +  Y      
Sbjct: 679 DFITLPSLGSQKH---LVYAKKITIENVQKAFKKLIYLALELNKIIIYSSSPYYFFKDDK 735

Query: 356 VDSQLYDGFFADVDRQIM 373
               +Y        +   
Sbjct: 736 KFYDVYVNTKGLEGKAHR 753


>gi|42524627|ref|NP_970007.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
 gi|39576837|emb|CAE78066.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
          Length = 276

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 61/204 (29%), Gaps = 27/204 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V +D ET G         +F  V+   + E++   +  F             + I GI
Sbjct: 11  TYVAFDTETSGAYPVGHDVVEFGAVK-WYKGEEVGRLQFLF---KPREPMTDFIIGIHGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      ++  E  R IH+FF      I+  ++  FD  +    F +N          
Sbjct: 67  TNEMVADAPLI-TEKIREIHEFFK---GAIVMAHHAPFDLGFMAIDFEKNQLPLLPEP-- 120

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L        +                 KLQ L     I+   AH A  D  A
Sbjct: 121 -------ALCTSLLSRKWIHGVEN----------HKLQTLVRHLNIDGGQAHRAYDDAKA 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207
            L +      K P         ++
Sbjct: 164 CLHVGLACFAKMPPEMTLAGAIKS 187


>gi|197337514|ref|YP_002157585.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11]
 gi|197314766|gb|ACH64215.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11]
          Length = 212

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 59/199 (29%), Gaps = 30/199 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  V+ D+ET G      DR  +   V++      ++  +         +         T
Sbjct: 13  HTVVVLDFETTGLSPNQGDRAIEIGAVKL-ENGVVVDRFQGLM---NPGFRVSSFIENYT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +          E       F      C +  +N  FD  +          +     
Sbjct: 69  GISNRMLADA-ASCDEVMNEFANFIQ---GCNLVAHNASFDKRFLDGELALIQREY---- 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                   D    +      + +          A+S KL DL   + IE+    H A AD
Sbjct: 121 ------DGDFACSLLVSRRLTQE----------ASSHKLGDLVAYHQIENDGVFHRALAD 164

Query: 181 VYATLALVWLIREKKPKLF 199
              T +L  ++ E   +  
Sbjct: 165 AEVTASLWLVLLETLEREH 183


>gi|150025497|ref|YP_001296323.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149772038|emb|CAL43514.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 256

 Score = 88.7 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 79/255 (30%), Gaps = 29/255 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G D+  DR  + +  ++     K    E              +   +
Sbjct: 5   LTRPICFFDLETTGIDIGKDRIVEISVFKIFPNGNK----ESKTWLVNPTIPIPAQTTAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +K   +     E + +++      +  + G+N+ RFD         R   D    
Sbjct: 61  HGITDEKVANEP-TFNELASQVYNMIKDSD--LAGFNSDRFDIPLLAEELLRAGVDFD-- 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
               G    D+  V   +   +                    L    G    NAH A+AD
Sbjct: 116 --MKGRVSVDVQTVFHKMEERTLS----------------AALKFYTGKSLENAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239
             AT  ++    ++ P+L   +         +K+ D   M      +   F   +     
Sbjct: 158 TMATYEILKAQLDRYPELENDMKSLSEFTTRKKIADFAGMIAFDKDNEEVFTFGKHKGVK 217

Query: 240 IAPVAW-HPRYKDSV 253
           +  V    P Y   +
Sbjct: 218 VNKVLETEPGYFSWI 232


>gi|311108015|ref|YP_003980868.1| exonuclease family protein [Achromobacter xylosoxidans A8]
 gi|310762704|gb|ADP18153.1| exonuclease family protein [Achromobacter xylosoxidans A8]
          Length = 207

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 60/183 (32%), Gaps = 27/183 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F++ D ET G   A     +FA VRV      +E       +     +P      +TGIT
Sbjct: 39  FIVADLETTGLSTATCEILEFAAVRVGEAGA-LEREYTQVVR-TRGPVPS-FISRLTGIT 95

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  RDGV      +    F        + ++N  FD  +      +        +   
Sbjct: 96  QAEVDRDGVP---VVQAFSSFLDFVEDLPVFFHNASFDRRFLGAAADQTGLPFANST--- 149

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L + R  +                 S KL+ LA   G      H A ADV  T
Sbjct: 150 ----HCTLALARRAW-------------PELPSHKLEILARHVGAS-DPTHRALADVRTT 191

Query: 185 LAL 187
           +A+
Sbjct: 192 VAV 194


>gi|219683338|ref|YP_002469721.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219620988|gb|ACL29145.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 123

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 8/112 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +++  D ET G     DR  +   V+V R  + ++                     +TGI
Sbjct: 10  NYISLDLETTGFSAQNDRITEIGAVKV-RDGKIVDRFTQL---VNPGRRVSARITELTGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           + +      V+E      +  F        +  +N +FD  +      R F 
Sbjct: 66  SNEMLEDQPVIE----DILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFR 113


>gi|189485715|ref|YP_001956656.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287674|dbj|BAG14195.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 198

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 60/205 (29%), Gaps = 30/205 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           + ++ V  D ET G D        + A ++V       E  E              E   
Sbjct: 14  LPDNLVFLDIETTGLDPEKGANIVEIAMLKVC--GGIEERYESL---VNPGLPIPSECSK 68

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I  I             E +  +  F       ++  +N  FD  +     Y        
Sbjct: 69  IHAIYDDMIKNSP-SFDEIAGNVFSFI---GHSVVVCHNAPFDLLFVYRELYLAGVPVKN 124

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             +       D L + R  ++F               S KL ++A A GIE    H A A
Sbjct: 125 IRY------IDTLKLARQYFSFD--------------SNKLGNIADAIGIEAELRHRAMA 164

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           DV    ++   I     +    + +
Sbjct: 165 DVLTMFSVAKYIFANMYRKDINMIE 189


>gi|189425539|ref|YP_001952716.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
 gi|189421798|gb|ACD96196.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
          Length = 168

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 42/188 (22%), Gaps = 26/188 (13%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            N  ++ D ET G  V    R  +   V V    +                     A  +
Sbjct: 1   MNRVIVVDTETTGLSVRNQGRVIEIGAVAV-ENGQITAELATL---INSGTPISYGAYRV 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ Q          E      +F        +  +N  FD  +  +  +         
Sbjct: 57  HGISEQMLAGRPTP-QEVWPWFLEF---AGNSPLVAHNAAFDRAFINHELHLLGMS-LAN 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W                        + P   +       + L      E V  H A  D
Sbjct: 112 PW---------------HCTVRLSRRKLPRLMNHKLETVYKHLFGEL-PEEVQRHRALDD 155

Query: 181 VYATLALV 188
                 + 
Sbjct: 156 ARMAARVW 163


>gi|237710744|ref|ZP_04541225.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA]
 gi|229455466|gb|EEO61187.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA]
          Length = 260

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 27/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +     ++  I
Sbjct: 7   LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNSNE----ETKTMRINPEMHIPEQSSAI 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E ++ I +        + G+N+ RFD       F R   D    
Sbjct: 63  HGIYDADVADCP-TFKEVAKEIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD---- 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+M+  +           +   + ++K        G    +AH A+AD
Sbjct: 116 -----------IDMMKRKFIDVQVIYHKLEQRTLSAAYKF-----YCGKNLEDAHTAEAD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205
             AT  ++    ++ P+  +    +
Sbjct: 160 TRATYEVLKSQLDRYPEELQNDMAF 184


>gi|237715177|ref|ZP_04545658.1| DNA Pol III epsilon chain [Bacteroides sp. D1]
 gi|262408870|ref|ZP_06085415.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647646|ref|ZP_06725213.1| exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294810715|ref|ZP_06769363.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|298481744|ref|ZP_06999934.1| exonuclease [Bacteroides sp. D22]
 gi|229445010|gb|EEO50801.1| DNA Pol III epsilon chain [Bacteroides sp. D1]
 gi|262353081|gb|EEZ02176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637012|gb|EFF55463.1| exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294442048|gb|EFG10867.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|295087704|emb|CBK69227.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Bacteroides xylanisolvens XB1A]
 gi|298271966|gb|EFI13537.1| exonuclease [Bacteroides sp. D22]
          Length = 259

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 78/256 (30%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +   T     +   +      +  I
Sbjct: 5   LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTL----RINPEMHIPEASSAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E ++ I +        + G+N+ RFD       F R        
Sbjct: 61  HGIYDADVADCP-TFKEVAKNIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+      F    + +   +    S   +     N     +AH A+AD
Sbjct: 112 -----------VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCDKN---LEDAHTAEAD 157

Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  ++   +        +  +     +  + +     M    +   +F   +     
Sbjct: 158 TRATYEVLKAQLDRYSDLQNDIAFLADYSSFSKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217

Query: 240 IAPVA-WHPRYKDSVI 254
           +A V    P Y   ++
Sbjct: 218 VAEVLKKDPGYYSWIL 233


>gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 244

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 25/189 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +   V +    +   + +VF     D    +PEA+ + GIT 
Sbjct: 9   IIFDIETTGLDKKNDRIIEIGAVELLDYSKTGRTFQVFLS--PDGKKVNPEALKLHGITD 66

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         +        FF+  N   I +N   FD  +      R   D       + 
Sbjct: 67  EFLRDKP-FFSAIFPEFWDFFNDKNAEWIAHNAK-FDVGFINAELQRINKDPL-----DP 119

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVYA 183
           +   D L + R  +               ++   L  L    G  I H + H A  D + 
Sbjct: 120 SRIVDTLSIARRKHP--------------SSRNDLNSLCKRYGITISHRSKHGALLDSHL 165

Query: 184 TLALVWLIR 192
              +   + 
Sbjct: 166 LADVYVQMM 174


>gi|296127268|ref|YP_003634520.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM
           12563]
 gi|296019084|gb|ADG72321.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM
           12563]
          Length = 252

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 26/205 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ I D ET G     D+  +   ++     ++I+           DY+P+      T I
Sbjct: 60  NYTIIDVETTGLKPREDKIIEIGAIKYRDN-KEIDYFSTL---VKVDYIPN-FISSYTNI 114

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       V+ E  ++ + F    +  ++GYN      +             Y  S  
Sbjct: 115 TNKMVKNAPRVD-EAIKQFYDFV--GDDILVGYNVPFDIKFLYDA--------LYEVSNG 163

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +DVM        D             +K   +A    I   N H A  D   
Sbjct: 164 ELLLNNDFIDVMYIAKRVLKDLEN----------YKQVTVASYYNISIDNLHRAMGDCKL 213

Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208
             A+   +++   + +     +  K
Sbjct: 214 CSAIYECLQKDILEKWGAFNKFYKK 238


>gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
          Length = 1442

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/387 (13%), Positives = 111/387 (28%), Gaps = 40/387 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  + + +  ++I     FF KP  +   +     +T I
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFFVKPIQE--INENITNLTNI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +      + E     +I + F   N  ++ +N I FD  +      +           
Sbjct: 465 NQEMVNDA-IDEKTALLKIKEIFD--NHILVAHNGISFDINFINQRLLKWGLKPL----- 516

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D L + RAI  F               S +L  +     +++ +  AH A  D 
Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEVAHRADYDA 561

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239
                +  +++      FE +   +   +L+ L+         +          +    L
Sbjct: 562 MVLADVFKIMKNSLVNDFEIINLNQINTKLQSLMLKNRSFGNWVNLYIKTQANVKDMYEL 621

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           ++       Y    I  +   + +        +    L   L++  D+    +   ++  
Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                P +    +     + +             L+     L        +  Y      
Sbjct: 679 DFITLPSIGSQKH---LVYAKKITLENVQKAFKKLVSLALELNKIIIYSSSPYYFLKDDK 735

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382
               +Y        +          P+
Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762


>gi|295106393|emb|CBL03936.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 1031

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 30/188 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + V+ D ET G     D   Q A  R+  Q   ++    F            +  ++T I
Sbjct: 46  NIVVVDTETTGFSFNHDELTQIAAARM-EQGRIVDWFITF---VNPGKPIPEDVAYLTDI 101

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +      +  +E    + +F        I  +N  FD  ++    + + Y     +W 
Sbjct: 102 HDEDVADAPLP-SEALSELAEFVGDAK---IVAHNAEFDRTFTTR--HPSGYPLLENTW- 154

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D LD+ R                    S +L DL  A G      H A ADV A
Sbjct: 155 -----IDSLDLARIA-------------LPRLKSHRLLDLVKAFGAPLST-HRADADVEA 195

Query: 184 TLALVWLI 191
           T ++  ++
Sbjct: 196 TCSIFRIL 203


>gi|193213751|ref|YP_001994950.1| hypothetical protein Ctha_0031 [Chloroherpeton thalassium ATCC
           35110]
 gi|193087228|gb|ACF12503.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC
           35110]
          Length = 578

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 63/196 (32%), Gaps = 27/196 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G     +R  +   ++  R  +++    +       +          TGI
Sbjct: 23  TFAVVDLETTGGLKPENRIIEICAIKC-RNGQEVG---MLESLVNPEQQISYFISQYTGI 78

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        V+++    ++ +FF      I   +N+ FD  +      RN Y      W 
Sbjct: 79  TNSMVDNAPVIQS-LLTKVSEFFQE---TIFVAHNVPFDMGFINMELERNGYAKLTNRW- 133

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L   R      P   +            L DLA   GI   N H A+ D  A
Sbjct: 134 --------LCTFRLARRLLPTQQK----------KNLGDLAKYFGIIVENRHRARGDCEA 175

Query: 184 TLALVWLIREKKPKLF 199
           T+ L+  +     +  
Sbjct: 176 TIKLLAELIILAQEQH 191


>gi|149372989|ref|ZP_01891945.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
 gi|149354349|gb|EDM42916.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
          Length = 472

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 69/218 (31%), Gaps = 30/218 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  F + D ET G  V   R  +   + V    E ++           +         +T
Sbjct: 5   TEKFTVIDVETTGG-VGQGRMTEICIITV-ENMEIVDVWSSL---INPEIYIPQHITALT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q          + +  I +        I   +N+ FD  + +  F        R  
Sbjct: 60  GITDQMVTDAPR-FCDVAAIIEEKTRD---AIFVAHNVNFDYGFLKKEFDLIGASFSRKK 115

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L  +R                 G  S+ L  L  + GI  ++AH A+AD 
Sbjct: 116 ----------LCTVRLSRKL----------IPGLPSYSLSKLCRSIGISLLDAHRAEADT 155

Query: 182 YATLALVWLIREKKP-KLFEYLYDYRNKNQLRKLIDIQ 218
            AT  L   + EK     FE   ++ NK+     +   
Sbjct: 156 RATTTLFLQLLEKDSVANFEVFLNFLNKSSREATLPPH 193


>gi|217970527|ref|YP_002355761.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217507854|gb|ACK54865.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 203

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 9/112 (8%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G   A  DR  + A V V      ++  +                  +
Sbjct: 1   MEAVAVIDFETTGLSPAQGDRATEIAAVIV-EDGRVVDRYQSLM---NAGVRIPAYIEAL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           TGIT        +   E  R +  F        I  +N  FD  +      R
Sbjct: 57  TGITNAMVRSAPLA-GEVMRDVSDFV---GDMPIVAHNASFDAKFWDAELGR 104


>gi|15616303|ref|NP_244608.1| hypothetical protein BH3741 [Bacillus halodurans C-125]
 gi|10176365|dbj|BAB07460.1| BH3741 [Bacillus halodurans C-125]
          Length = 219

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 62/218 (28%), Gaps = 32/218 (14%)

Query: 5   FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F ++D ET G  V A DR  + A V V    E  +    F      +     E   +TGI
Sbjct: 27  FTVFDTETTGFAVGAGDRLIEVAAVHV-EGLEVTD--FTFQTYVNPERNIPAEIEELTGI 83

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +  K                +F     +     +   FD    +    R           
Sbjct: 84  SEDKVKNAPASLP-AIESFFRFVEQSGSAAWVGHYASFDVTVLKKELQR------YQFSL 136

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N    +D LD++                        L+  A   G      H A  D   
Sbjct: 137 NVPLLFDTLDLI-------------GYISPSKDMRDLEVYAKQFGTYIYERHQALGDALT 183

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           T  L   +            + R K  L  LIDI +MT
Sbjct: 184 TAHLFCELLRH--------LEARGKTTLADLIDISSMT 213


>gi|301058175|ref|ZP_07199227.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [delta proteobacterium NaphS2]
 gi|300447807|gb|EFK11520.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [delta proteobacterium NaphS2]
          Length = 233

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 16/194 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D E  G     D       VR+ +        + F+            +  I  IT
Sbjct: 42  FVVFDTELTGLKQRRDEIIAIGAVRI-KNARICFE-DTFYALIKPQGKLYTPSTLIHRIT 99

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P +      +E E   R   F        +  +++  D  +                +  
Sbjct: 100 PGELRGAEPIE-EVLPRFIDF---CGGAFLVGHHVSLDLGFVNRACQN---------YLG 146

Query: 125 GNSRWDLLDVMRAIYAFSPDGI-QWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           G  +   LD +R   A+            +   S+KL  L+    +     H+A  D   
Sbjct: 147 GVIKSPSLDTLRLARAYKTSLNGPHLDHQEQQDSYKLSSLSDEFHLPKFAEHNALQDALQ 206

Query: 184 TLALVWLIREKKPK 197
           T  L   +  K   
Sbjct: 207 TAYLFIYLIHKMRN 220


>gi|256851162|ref|ZP_05556551.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260660586|ref|ZP_05861501.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
 gi|282934628|ref|ZP_06339871.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
 gi|297206027|ref|ZP_06923422.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
 gi|256616224|gb|EEU21412.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260548308|gb|EEX24283.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
 gi|281301203|gb|EFA93504.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
 gi|297149153|gb|EFH29451.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
          Length = 936

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 29/202 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63
           F + D ET G     DR  QF    + +  + I++   F   P  D    P+AV  +TGI
Sbjct: 10  FAVVDLETTGTRRGQDRIIQFGCAII-KNRQIIKTY-SFLINPKADI---PQAVQNLTGI 64

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P   +   V    F+ +I          +   +NI FD  +       N +        
Sbjct: 65  KPADVVNQPV-FKNFATQIEDILQD---TVFVAHNINFDLPFLNAELAANGFP------- 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +R     + +  +         S++L DL  +  ++H N H A +D YA
Sbjct: 114 ----------KLRNRAIDTVELSKI--AFPTLPSYRLSDLTHSLNLKHTNPHQADSDAYA 161

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
           T +L+  I +K   L +   + 
Sbjct: 162 TASLLLKILDKLESLPQSTLNT 183


>gi|239993463|ref|ZP_04713987.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC
           27126]
          Length = 239

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 57/195 (29%), Gaps = 25/195 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  +   V V        +   F          + EA+ + GIT
Sbjct: 4   IVLDTETTGIDPKEGHRIIEIGCVEV-VNRRLTGNH--FHVYINPGRHIEQEAIEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         ++ ++    F        +  +N  FD  +  + F          +   
Sbjct: 61  NEFLADKP-TFSQVAQEFVSFIK---GAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQI 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L + R ++    +               L  L    GI+  H   H A  D  
Sbjct: 117 -CDVLDTLTLARQMHPGQKN--------------NLDALCKRYGIDNSHRTLHGALLDAE 161

Query: 183 ATLALVWLIREKKPK 197
               +  L+   + K
Sbjct: 162 ILADVYLLMTGGQTK 176


>gi|221632364|ref|YP_002521585.1| exonuclease family [Thermomicrobium roseum DSM 5159]
 gi|221156848|gb|ACM05975.1| exonuclease family [Thermomicrobium roseum DSM 5159]
          Length = 982

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 62/189 (32%), Gaps = 34/189 (17%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59
           M   +V  D E  G D   D   + A ++   + E +E  E    +P     P P AV  
Sbjct: 1   MPRIYVALDIEATGMDPERDEIIEVAAIKFREE-EVLERFETL-VQPRR---PVPLAVAS 55

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TG+T +   R      + + R+ QF        I   +  +D                 
Sbjct: 56  LTGLTMRDLRRAP-SFQQIAPRLRQFVRN---YPIVGQSPDYDLQMLSAH---------- 101

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                   R  + D  R      PD            ++ L  +A   GI     H A A
Sbjct: 102 ----GLELRNPVYDTFRLATILLPDL----------PAYSLAGIAARLGISVAQQHRAMA 147

Query: 180 DVYATLALV 188
           DV  T+A+ 
Sbjct: 148 DVETTMAVF 156


>gi|311746711|ref|ZP_07720496.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
 gi|126578388|gb|EAZ82552.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
          Length = 456

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 86/335 (25%), Gaps = 36/335 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D ET G   +     + A +  D + + IE  E        +         +TGI 
Sbjct: 3   FAIVDIETTGGAASTCGITEIAILIHDGE-KVIEEFESL---INPEQDIPTYITGLTGID 58

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E E S ++       +  +   +++ FD  + R  F     +        
Sbjct: 59  NSMVSDAPTFE-ELSDKLWDLL---HGRVFVAHSVNFDYGFVRACFNAIGRE-------- 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              + D L  +R                 G +S+ L  +     I  +  H A  D  AT
Sbjct: 107 --FKVDKLCTVRLARKI----------IPGLSSYSLGRICETQKIPILARHRAMGDARAT 154

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLI---DIQNMTPLVHVSGMFGASRSNTALIA 241
             L   + +K  +         +                 P           + N   + 
Sbjct: 155 AILFDQMLKKDSQTVFQALKKNSGEAFLPPNFPITKYRKIPEACGVYYMMNEKGNVVYVG 214

Query: 242 PVAWHPRYKDSVIGCNL-----SGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296
                     +     L             DL              E   +  +  K  +
Sbjct: 215 KAINIKERFKNHFSGQLLPSLKQKLKEEVVDLKWEITGTEFLALLLEALEIKRIWPKYNN 274

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLL 331
             K P  M   +  +++         +  ++L  L
Sbjct: 275 ALKLPKTMWGLFHYEDNSGFSRFQIAKVTKHLRPL 309


>gi|240142395|ref|YP_002966905.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240012339|gb|ACS43564.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 248

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 53/193 (27%), Gaps = 28/193 (14%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +   V+ D ET G D    DR  +   V +   +        +      +     +A  I
Sbjct: 4   SQRIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFRTGRHFHSY---VNPERPVPADATAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +      V  A  +  I +F +         +N  FD  +    F          
Sbjct: 61  HGITDEMLKDAPV-FAAVAADIVEFIADSPAIF---HNAPFDLGFFDLEF---------- 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
               G      LD  R   +        P+         L  L    GI+      H A 
Sbjct: 107 ----GLLSLPSLDRSRVTDSLVHARKLLPAGAKA----GLDALCNRYGIDRTRRTKHGAL 158

Query: 179 ADVYATLALVWLI 191
            D      +   +
Sbjct: 159 MDSELLADVWLAM 171


>gi|307327637|ref|ZP_07606822.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306886749|gb|EFN17750.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 254

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 68/208 (32%), Gaps = 18/208 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D+  DR    A V ++      +             +   EA  I GI+ ++
Sbjct: 11  FDLETTGIDIESDRIVTAALVFLEPDGRVSDE---RTWMLDPGVVIPEEAAAIHGISTEQ 67

Query: 68  ALRDGVVEAEFSRRIH---QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A + GV        I           T ++  N  R+D         R+           
Sbjct: 68  ARKHGVPAGPAVAEISTAVAQLLRVGTPLVIMNA-RYDLSLLDRECRRHQVAPLSARQ-- 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G     ++D +              +         LQ L    G+   +AHDA++D  A 
Sbjct: 125 GARLHPVIDPLVLDKH---------ADRYRKGRRTLQALCAHYGVPLDSAHDARSDAVAA 175

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLR 212
             +   I E+ P +        ++ Q+R
Sbjct: 176 ARVARRIGEEHPSIGTVGLAELSEVQVR 203


>gi|194336729|ref|YP_002018523.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309206|gb|ACF43906.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 190

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 74/201 (36%), Gaps = 27/201 (13%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++ +D ET G                R  Q A +  D +  ++ S +    KP    +P 
Sbjct: 2   YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAII-KPEGFVIPS 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             AV I GI+ Q+AL +G    +  +  ++  +     ++  +NI FD+    +   R  
Sbjct: 61  -SAVQIHGISTQRALLEGKPLGQVLQSFYELVADAE--VLVAHNISFDEKIVGSELIRAG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVN 173
                 S  +      +           P G +WP         KL +L     G     
Sbjct: 118 MP---NSLPSKRKICTMESTTDFCAIKGPYGNKWP---------KLSELYFQLFGTVFNE 165

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH+A +D+ AT    W ++ +
Sbjct: 166 AHNAASDIQATAKCFWELKRR 186


>gi|220934132|ref|YP_002513031.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995442|gb|ACL72044.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 235

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 32/198 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           V+ D ET G + A   R  +   V      E +        F      D   D  A+ + 
Sbjct: 9   VVLDTETTGLEPAQGHRIIEIGCV------ELVGRRITRRTFHHYLQPDREIDEGALAVH 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +           F+  + +F        +  +N  FD  +  +       D+ R  
Sbjct: 63  GISNEFLADKPR----FADVVDEFLEFIRGAELVIHNAPFDVGFLDHELK--LLDAARGQ 116

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
             + +S  D LD+ R ++    +               L  L     I++     H A  
Sbjct: 117 VTDYSSILDTLDLARRMHPGQRN--------------SLDALCKRYQIDNSGRELHGALL 162

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 163 DARILADVYLAMTGGQTT 180


>gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
 gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
          Length = 1442

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/378 (14%), Positives = 107/378 (28%), Gaps = 40/378 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  V + +  ++I     FF KP      +     +T I
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAV-IMQNNKQIGEKIQFFVKPI--QQINENVTNLTNI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      + E     +I + F      ++ +N I FD  +      +   +       
Sbjct: 465 SQEMVNNA-IDEKTALLKIKEIFDDH--ILVAHNGINFDINFINQRLLKWGLEPL----- 516

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D L + RAI  F               S +L  +     +++ +  AH A  D 
Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEIAHRADYDA 561

Query: 182 YATLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
                +  +++      F    L +   K Q   L +      +          +    L
Sbjct: 562 IVLTDVFKVMKNNLFNDFGITNLNEINTKLQTTMLRNRSFGNWINLYIKNQANVKDMYEL 621

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           ++       Y    I      + +        +    L   L++ +DE    +   I+  
Sbjct: 622 VSISHTDMYYTRPTITTGFLANKKDKLIISNSIHESDLINALYSKNDE---EIKRLIQRY 678

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                P L    +     + +             L+     L        +  Y      
Sbjct: 679 DFITLPSLGSQKH---LVYAKKITIENVQKAFKKLIYLALELNKIIIYSSSPYYFFKDDK 735

Query: 356 VDSQLYDGFFADVDRQIM 373
               +Y        +   
Sbjct: 736 KFYDVYVNTKGLEGKAHR 753


>gi|77461145|ref|YP_350652.1| exonuclease [Pseudomonas fluorescens Pf0-1]
 gi|77385148|gb|ABA76661.1| putative exonuclease [Pseudomonas fluorescens Pf0-1]
          Length = 203

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 60/217 (27%), Gaps = 40/217 (18%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    +  R  + A V +      +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPSSSCRATEIAVVML-ENGRIVERYQSLM---NAGVRIPAFIEQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E +    +++F        +  +N  FD  +      R        
Sbjct: 57  TGISNAMLRTAPSAE-KVMNEVNEFV---GCTPLLAHNAAFDQKFWDFELGRI------- 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
                            +  F+   +        A + KL  L     + H   AH A A
Sbjct: 106 -------------KRTRLQNFACSLLLARRLMPAAPNHKLGTLTTFAQLPHTGQAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
           D      L+  +            + R+K+ + +L  
Sbjct: 153 DAEMAANLMVHLAG----------ELRDKHGVSELSH 179


>gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
 gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
          Length = 1446

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            +FV++D ET G +       +   V++ +    +E                 +   +T 
Sbjct: 418 ENFVVFDLETMGLNSHEHEIIEIGAVKL-QGTRIVERYSQL---VNPKKTIPKKIQELTN 473

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+         +E E   +  +F        +  +N  FD  + R    +     Y    
Sbjct: 474 ISQDMVDNMPTIE-EVLPKFMEFV---GDSTMVAHNAPFDMGFIRRDVKKIMGYDY---- 525

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               +  D L + R +Y                 ++ L++L    G+   N H A  D  
Sbjct: 526 --KPAVIDTLQMARDLY-------------PELKAYGLKNLNKVLGLSLDNHHRAVDDSQ 570

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  +  +  EK  ++     +
Sbjct: 571 ATANMFIIFIEKYMEMGITNLN 592


>gi|237718360|ref|ZP_04548841.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4]
 gi|229452293|gb|EEO58084.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4]
          Length = 243

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +   T     +   +      +  I
Sbjct: 5   LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTL----RINPEMHIPEASSAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI     +       E ++ I +        + G+N+ RFD       F R        
Sbjct: 61  HGIYDADVVDCP-TFKEVAKNIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+      F    + +   +    S   +     N     +AH A+AD
Sbjct: 112 -----------VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCDKN---LEDAHTAEAD 157

Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  ++   +        +  +     +  + +     M    +   +F   +     
Sbjct: 158 TRATYEVLKAQLDRYSDLQNDIAFLADYSSFSKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217

Query: 240 IAPVA-WHPRYKDSVI 254
           +A V    P Y   ++
Sbjct: 218 VAEVLKKDPGYYSWIL 233


>gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
 gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
          Length = 855

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 82/217 (37%), Gaps = 25/217 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V++D E+ G +   D   Q AG++++ + E IE  E F   P        ++  + G
Sbjct: 493 ENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIEKFERFLT-PKKYV---GDSYLVHG 548

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + Q     G  +    +   +F       ++  +NI FD     +   R          
Sbjct: 549 FSDQFLKEKGEDKERVLKDFLEFVKD---TVVIGHNITFDITILNSELQRLGL-----EK 600

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N  + +D LD+ R  Y                T+ KL+ L+     E  ++HDA  D+ 
Sbjct: 601 ANFKTYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           AT  ++ ++ ++K +             ++K   I  
Sbjct: 648 ATKDVLMVMLKEKVEPTIINRMAVYGKYIKKFQPIYE 684


>gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
 gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
          Length = 243

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 56/199 (28%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQVGAHYEGHRIIEIGAVEV-INRRLTGR--NFHVYLKPDRLVDPEAFMV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+    L      A+      +F        +  +N  FD  +    F +   D  + 
Sbjct: 66  HGISDDFLLGQP-SFADVVDEFLEFIRGAE---LVIHNAPFDIGFMDYEFAKLGRDLPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCTITDSLVMARRLFPG--------------KRNSLDALCNRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +  ++   +  
Sbjct: 166 LDAQILADVYLIMTGGQTS 184


>gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM
           7271]
 gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM
           7271]
          Length = 1485

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 71/204 (34%), Gaps = 30/204 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     I   + F  KP    +P 
Sbjct: 2   YLIFDTETTGLPRRWDAPLTDSDNWPRAVQIAWQLHDEWGALI-EHQDFLIKPDGFDVPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  + GI+ Q A   G+  AE  +  ++  S      +   NI FD       FYR  
Sbjct: 61  -DAEKVHGISTQLAEAQGLPIAEVFKAFNEALSKAQ--YVVGQNIGFDINIMGAEFYRYG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            +          S    + V+      + +  Q      G   +KL  L        G+ 
Sbjct: 118 VE----------SPLTQMPVIDTCTEATANLCQIAGGKGGR--YKLPTLTELHSFLFGVP 165

Query: 171 HVNAHDAKADVYATLALVWLIREK 194
              AH+A ADV AT    + +  +
Sbjct: 166 FAEAHNATADVEATTRCFFELIRR 189


>gi|291287661|ref|YP_003504477.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884821|gb|ADD68521.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 228

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 26/203 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G D+   R    A V+V + ++ I+    F      +     E++    IT
Sbjct: 45  FSVIDTETTGLDLNDARIINVAAVKV-QNFKIIDFYNSF---INPETEIPKESIQWHNIT 100

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +               +  F +  +  II  +++ FD          +F      +W +
Sbjct: 101 DEMVADKPT----AGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMMDSFSCQINNNWLD 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               +                    +       + L  L     +     H A  D  AT
Sbjct: 157 TMLIYS------------------HAIIKKDERYSLDYLLDLYNVTCNGRHTALGDALAT 198

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             +   +  +  + F+ + +  +
Sbjct: 199 AEVFTKMIMQASREFKTVRELCD 221


>gi|307297299|ref|ZP_07577105.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916559|gb|EFN46941.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 185

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 27/189 (14%)

Query: 1   MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   +++ D ET G      DR  + A + V     KI     F        +   +   
Sbjct: 1   MKKIYLVIDTETTGSSPLEGDRILEIAAIPV--YGNKILHNLSFQSLVNPLVMIPAQITG 58

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I G+  +  L +       +    +F +      I  +NI  D  +              
Sbjct: 59  IHGLKNEDVLDEPT----MAEVFPRFRNYVGGATIVGHNIVNDMTFFDIASKETGILPLA 114

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            ++       D +D+   ++                  + L+ +A    I  V  H A  
Sbjct: 115 NNY------IDTIDIAHEVF--------------SEGPYGLKSIAKRLRIRDVPTHRAMD 154

Query: 180 DVYATLALV 188
           D   T  + 
Sbjct: 155 DARVTAKVF 163


>gi|212635482|ref|YP_002312007.1| DNA polymerase III [Shewanella piezotolerans WP3]
 gi|212556966|gb|ACJ29420.1| DNA polymerase III [Shewanella piezotolerans WP3]
          Length = 222

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 62/228 (27%), Gaps = 30/228 (13%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ D+ET G      DR  +   V++ +    ++  +         +         TG
Sbjct: 23  TVIVLDFETTGLSPNQGDRAIEIGAVKL-QHGIVVDRFQELM---NPGFRISGFIESYTG 78

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ Q        E E   R   F +  N   +  +N  FD  +          +      
Sbjct: 79  ISNQMLNNAAPCE-EVMERFADFIADYN---MVAHNASFDQRFLDAELNSIGREY----- 129

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADV 181
                R +    M        +          A + KL  L     I+H    H A AD 
Sbjct: 130 -----RGEFACSMLIARRLYQE----------APNHKLGSLINYKQIKHDGVFHRALADS 174

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
             T  L  ++     +            Q        N+   ++    
Sbjct: 175 EMTADLWLVMLNDLKRDHNIQEPEFKLMQAITKQTKANVQKYLYNYSR 222


>gi|253572229|ref|ZP_04849632.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6]
 gi|298386580|ref|ZP_06996136.1| exonuclease [Bacteroides sp. 1_1_14]
 gi|251838004|gb|EES66092.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6]
 gi|298260957|gb|EFI03825.1| exonuclease [Bacteroides sp. 1_1_14]
          Length = 259

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 79/256 (30%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +      +  +
Sbjct: 5   LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPEASSAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E ++ + +        + G+N+ RFD       F R        
Sbjct: 61  HGIYDADVADCP-TFKEVAKNVARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+      F    + +   +    S   +           +AH A+AD
Sbjct: 112 -----------VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCEK---SLEDAHTAEAD 157

Query: 181 VYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  ++    ++ P    +  +     +  + +     M    +   +F   +     
Sbjct: 158 TRATYEVLKAQLDRYPDLQNDIAFLAEYSSFTKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217

Query: 240 IAPVA-WHPRYKDSVI 254
           +A V    P Y   ++
Sbjct: 218 VAEVLKKDPGYYSWIL 233


>gi|326803711|ref|YP_004321529.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651377|gb|AEA01560.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 890

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 88/285 (30%), Gaps = 31/285 (10%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   + + D ET G      DR  Q   V      +KI                      
Sbjct: 1   MPVKYAVVDLETTGTKYNRGDRIIQIG-VVFLEGQKKIGEF---KSNIQPLIPVPKNISD 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI  +      + E + +  + Q       C+   +NI FD  +    F      +  
Sbjct: 57  LTGIQTEDLRDAPLFE-DIAPDLFQQLQD---CVFVAHNINFDYKFLSASFEGVGLPALD 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D ++++R +Y               A S+KL D +L +GI  V AH A  
Sbjct: 113 LE------GIDTVELIRVLY-------------PQAASYKLGDFSLDHGINLVKAHTAIE 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           D  AT  L+  + +K   L E LY         K    Q+     +        R+   +
Sbjct: 154 DARATAQLLVQVMDKVASLPESLYKAM--QPWLKFFIRQSGKYFSYWYNHVHCQRNRGLI 211

Query: 240 IAPVAWHPR-YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283
                 +P   +        + + +    L   +     F  + E
Sbjct: 212 RGSFTLNPEINEGLYRPLAGTEEDQDSGHLSIQEDVMDFFDQNSE 256


>gi|229138336|ref|ZP_04266930.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST26]
 gi|228645101|gb|EEL01339.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST26]
          Length = 99

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 1   MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  +V+ D ET G       D+  Q A V V    E +E    F           P   
Sbjct: 1   MSKRYVVVDLETTGNSWKDGKDKITQIAAVVV-EDGEILEIFSSF---INPKREIPPFIT 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
            +TGI      +  + E + +  + +            +N+ FD  +
Sbjct: 57  ELTGIDESMVKQAPLFE-DVAPMVVELLQ---GAAFVAHNVHFDWNF 99


>gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 236

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 51/195 (26%), Gaps = 29/195 (14%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   +I+D ET G D    DR  +   V V                   +     E   
Sbjct: 1   MSKREIIFDTETTGLDPRGGDRVTELGCVEV-IDLIPTGK--DLRILINPERDIPAEVTA 57

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TG T +    +    AE   +   F        +  +N  FD  +      R       
Sbjct: 58  VTGHTWEMLKDEPK-FAEIVDQFLDFIEDS---TLVAHNAMFDMGFINMELERCGKPI-- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                       +   R I   +    ++P          L  L     +   +   H A
Sbjct: 112 ------------IPKARFIDTAAIAREKFPGAPA-----SLDALCKRFDVSLDSRTKHGA 154

Query: 178 KADVYATLALVWLIR 192
             D Y    +   + 
Sbjct: 155 LIDSYLLAEVYLELN 169


>gi|315224304|ref|ZP_07866138.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
           ochracea F0287]
 gi|314945694|gb|EFS97709.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
           ochracea F0287]
          Length = 442

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 75/251 (29%), Gaps = 32/251 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +     A  + +   E  +           +         +TGI 
Sbjct: 2   YAILDIETTGGKYNEEGITDIAIYQFNGH-EITDQFISL---INPERPIQEFVTKLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++RI +  +    CII  +N  FD    +  F R  YD        
Sbjct: 58  NKMLRNAPK-FYEVAKRIVEITTD---CIIVGHNAAFDYRILQTEFRRLGYDF------- 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                        +                  S+ L  L  + GI   + H A  D  AT
Sbjct: 107 -------------VRTTLCTVELSERLIPNKESYSLGKLVRSLGIPVSDRHRASGDALAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV--SGMFGASRSNTALIAP 242
           L L   + EK  K  + +     K  +R  +  +++  L  +  +       +    +  
Sbjct: 154 LKLFKYLLEKDTK--KDIITTSVKQDIRLEMASRHLKILDTLPETLGIFYMHNEEGKVIY 211

Query: 243 VAWHPRYKDSV 253
           +  H   K  V
Sbjct: 212 IGKHKNIKQQV 222


>gi|323345727|ref|ZP_08085950.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis
           ATCC 33269]
 gi|323093841|gb|EFZ36419.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis
           ATCC 33269]
          Length = 284

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 58/188 (30%), Gaps = 24/188 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   +++D ET G D+  D   Q + ++V    ++ E   +F            E   +
Sbjct: 5   LTKPLIVFDLETTGLDLVNDHIIQISYIKVYPDGKE-ERENIF---VNPGISIPEEVTLL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI             E +  + + F        GYN+  FD       F R   D    
Sbjct: 61  TGIGNDDVKDAP-TFKEIASSLCEKFK--GCDFAGYNSNHFDIPMLAEEFLRAGID---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                       D        +        + + A ++K          E   AH A  D
Sbjct: 114 -----------FDFAHCRLIDAQTIFHKMEKRNLAAAYKFY--CGRKMEEDFEAHRADQD 160

Query: 181 VYATLALV 188
             AT  ++
Sbjct: 161 TEATYKVL 168


>gi|323526835|ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323383837|gb|ADX55928.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 244

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 58/205 (28%), Gaps = 27/205 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   LILDTETTGLNARTGDRIIEVGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE +     F    +  I   +N  FD  +    F             +
Sbjct: 61  TEFLSDKPK-FAEIADEFRDFIQGADLII---HNAPFDIGFLDAEFALLGLPPVS---TH 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 114 CGEIIDTLARAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207
               +   +   +  L   +    +
Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGESH 184


>gi|34498206|ref|NP_902421.1| exonuclease [Chromobacterium violaceum ATCC 12472]
 gi|34104060|gb|AAQ60420.1| probable exonuclease [Chromobacterium violaceum ATCC 12472]
          Length = 207

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 51/202 (25%), Gaps = 30/202 (14%)

Query: 1   MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G     D R  +     V      ++                P    
Sbjct: 1   MRQRVAVIDFETNGATPGGDCRATEIGVAMV-EDGRVVDRFHSLM---NAGVWVPPMIER 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+          E    R    F        +  +N  FD  +              
Sbjct: 57  LTGISNAMLKDAPPAER-VMRDAAHFV---GDAPLAAHNAGFDRKFWDYELGLLGL---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAK 178
                 + R D    +                   A   KL  LA   G  +   AH A 
Sbjct: 109 ------SRRQDFACTLLLSRRLL----------PQAPDHKLGTLARWAGLPDTGRAHRAM 152

Query: 179 ADVYATLALVWLIREKKPKLFE 200
           AD      L+ L+ +   + F 
Sbjct: 153 ADAEMAAQLMLLLGDTLSRQFH 174


>gi|332291046|ref|YP_004429655.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169132|gb|AEE18387.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 257

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 78/254 (30%), Gaps = 35/254 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D ET G +VA DR  + + ++V     +    E F  +             + GI+
Sbjct: 9   ICFFDLETTGINVAKDRIVEISILKVFPDGRE----EEFTERINPTVPIPAATTAVHGIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +      A  ++ ++      +  + G+N+ RFD         R+  D        
Sbjct: 65  DADVVDKP-TFAARAKDVYDIIKDAD--LAGFNSNRFDIPLLVEELLRSGID-------- 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   D+         +      +     ++K        G +  NAH A AD +AT
Sbjct: 114 -------FDMKNRNAIDVQNIFHKMEQRTLVAAYKF-----YCGKDLTNAHSASADTWAT 161

Query: 185 LALVWLIREKKPKLFEYL-----YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             ++    ++  +L   +     +  R K          +   +   +      +    +
Sbjct: 162 YEVLKSQLDRYDELENDMKFLGDFSTRKKQADFAGFIGYDKDDVEIFTFGKHKGKKVEEV 221

Query: 240 IAPVAWHPRYKDSV 253
              +   P Y   +
Sbjct: 222 ---LDNEPGYFGWI 232


>gi|237750780|ref|ZP_04581260.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879]
 gi|229373225|gb|EEO23616.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879]
          Length = 268

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 29/199 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
                D ET    V   +  +   + + +  E +++ +     P        + + +TGI
Sbjct: 79  KLCFVDIETTSASVKNGQIIEIGAI-IAQNGEILDTFDTLVYSP----FVPEDIIDLTGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                     +E +  ++   F       +   +N+ FD  +     +            
Sbjct: 134 DSYMLEDAPRLE-QVLKQFRAFL---GDSVFVAHNVSFDYNFIAESLHEYDMPPLFN--- 186

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R   LD+ R              R   +  + L  L    GI    AH A AD   
Sbjct: 187 ---PRLCTLDLSR--------------RTIVSKKYALAYLNDMLGINTAQAHRAYADALT 229

Query: 184 TLALVWLIREKKPKLFEYL 202
              L  +  +  PK  + L
Sbjct: 230 AFRLYEICMQSLPKEVKTL 248


>gi|116618479|ref|YP_818850.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097326|gb|ABJ62477.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 797

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 77/232 (33%), Gaps = 28/232 (12%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           + FV+ D ET G  V    R  Q     + ++ + ++  E F        L D +   +T
Sbjct: 5   DTFVVVDLETTGHSVKKGGRIIQIGMTFI-KKRQIVDHFESF---VNPGQLIDRQIQQLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I+ +        E E +  +          +I  +N+ FD  Y  + F R  +      
Sbjct: 61  HISQKDVQNAPYFE-EIAPLLQNLLQN---TVIIAHNVNFDYPYLNDEFERTGFPLL--- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               ++  D + + +                  A  ++L DL     I   NAH A AD 
Sbjct: 114 ---KSAAIDTVQLAQI-------------LFPTAPGYRLLDLTTYLNITLKNAHRANADA 157

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
           +AT  L     +K  +L +       +     L   Q    LVH        
Sbjct: 158 HATALLFLKFWKKLEELPDITLKQLQQGDWPLLRQTQQFLKLVHSKNKQNFG 209


>gi|254372921|ref|ZP_04988410.1| hypothetical protein FTCG_00492 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570648|gb|EDN36302.1| hypothetical protein FTCG_00492 [Francisella novicida GA99-3549]
 gi|332678259|gb|AEE87388.1| DNA polymerase III epsilon subunit [Francisella cf. novicida Fx1]
          Length = 230

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 63/209 (30%), Gaps = 24/209 (11%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V        +T  F+C P   Y  +  A+ I G+T
Sbjct: 5   VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNTLHFYCNPN--YEVEAGALAIHGLT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E     ++ +         +  +N  FD  +          + Y     N
Sbjct: 62  NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQN 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D LD+ R  +    +               L  L        +H   H A  D  
Sbjct: 118 VARIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L        +KN +
Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 192


>gi|253988342|ref|YP_003039698.1| DNA polymerase III subunit epsilon [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus
           asymbiotica]
          Length = 248

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 30/198 (15%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G +         +  +   V V             + KP  D L DPEA  +
Sbjct: 9   VVLDTETTGMNKLGVHYEGHKIIEIGAVEV-VNRRLTGRHFHIYVKP--DRLVDPEAFEV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +      +  A+ +    +F       I   +N  FD  +    F +   D    
Sbjct: 66  HGISDEFLQDKPL-FADIADEFIEFIRGAELII---HNAPFDIGFMDYEFGKLNRDIPPT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +  +     D L + RA++                    L  L     I++     H A 
Sbjct: 122 T--DFCKVTDSLQLARALFPG--------------KRNNLDALCDRYDIDNSQRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKP 196
            D      +  ++   + 
Sbjct: 166 LDAEILADVYLIMTGGQT 183


>gi|262194253|ref|YP_003265462.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077600|gb|ACY13569.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 59/190 (31%), Gaps = 19/190 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V  D ET G D       + A +RV  +  + E T V   +P      DPEA+ + 
Sbjct: 1   MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERTLVLRVRPERLEDADPEALEVN 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G   Q+   D V   E    +          ++  +N+ FD  +    +    +      
Sbjct: 61  GY-HQRVWVDAVSLDEALAELAPMLE---GAVLAGHNVAFDRRFLEAAWDYVGHRP---- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N     LD     +     G           S  L  +    G+     H A  DV
Sbjct: 113 ---ENLDHHALDTAALAFPLLMAG--------EIDSLSLTPVCAHLGVLRGEEHWAFDDV 161

Query: 182 YATLALVWLI 191
            A L +   +
Sbjct: 162 RACLGVARRL 171


>gi|24374102|ref|NP_718145.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
 gi|24348589|gb|AAN55589.1|AE015697_11 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
          Length = 242

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           VI D ET G +          R  +   V V             +         DPEA+ 
Sbjct: 11  VILDTETTGMNQGSGAVYLGHRIIEIGCVEV-INRRLTGRYYHQY--INPGQAIDPEAIA 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT ++   +     + ++    F S      I  +N  FD  +  + F  +      
Sbjct: 68  VHGITDERVANEPRFH-QIAQEFIDFISGAE---IVAHNANFDVSFMDHEF--SLLQPLG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
               +     D LD+ + ++    +               L  L    GI++     H A
Sbjct: 122 PKTRDICEILDSLDIAKFLHPGQKN--------------NLDALCKRYGIDNSRRHYHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +   +   + K 
Sbjct: 168 LLDAEILADVYLSMTGGQTKF 188


>gi|320161625|ref|YP_004174850.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1]
 gi|319995479|dbj|BAJ64250.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1]
          Length = 194

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 22/191 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +  D ET G   A D   + + V  +   E +  + V   +P       P+A+ +
Sbjct: 21  LKHNPIYLDTETTGLS-AQDEIIEISIV--NDNGEVVYESLVRPTRP-----IPPDAIAV 72

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +   +         + +          ++   N  FD    +    R        
Sbjct: 73  HGISNEDVQKA-RPWHIVWQEVRPILLNAG--VVVIYNEEFDLRMMQQSHARLGLPW--- 126

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R+   D+M+    +  +   W  +        L       GI   NAH A AD
Sbjct: 127 -----RDRFRTFDLMKLYAEYYGE---WDPKRRAYRYHSLDAAGKHCGITLPNAHRATAD 178

Query: 181 VYATLALVWLI 191
              T AL+  +
Sbjct: 179 TLLTRALLHFM 189


>gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
 gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
          Length = 281

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 47/193 (24%), Gaps = 29/193 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G    LDR  +   + VDR    +                 P    +TGIT
Sbjct: 45  LAFVDLETTGGRPGLDRITEVGVIEVDRDG--VRRWSTL---VDPLQPIPPFVQQLTGIT 99

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         +  + +         I +N             + + +    +    
Sbjct: 100 DAMVRGAP-TFDALAAELARRLD--GKLFIAHN-----------ARFDHGFLKKAFEQIG 145

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  LA    +     H A AD    
Sbjct: 146 IRFDPDVLCTVRLSRALF----------PRESRHGLDALAQRLDLSACGRHRALADADLV 195

Query: 185 LALVWLIREKKPK 197
                 +    P+
Sbjct: 196 WQFWQRVHALHPR 208


>gi|288554371|ref|YP_003426306.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4]
 gi|288545531|gb|ADC49414.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4]
          Length = 220

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 62/202 (30%), Gaps = 24/202 (11%)

Query: 4   HFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F I+D ET G  +   DR  + AGVRV    E  E    F      D     +   +TG
Sbjct: 27  TFTIFDTETTGFAINGADRMIEIAGVRV-AGLEVQEQ--TFQTFVNPDREIPEKITSLTG 83

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ +K         E   R  QF    ++ +   + + FD    +    R+ Y       
Sbjct: 84  ISGEKVKDAPSSL-EALERFFQFNEDIDSKLWVGHYVSFDMMVVKKELLRHKYTY----- 137

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +     D LD++                +       L+  AL  G      H A  D  
Sbjct: 138 -DTPLVVDTLDLI-------------GYLNPSRDMRDLEVYALQFGTLVYERHQALGDAM 183

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
            T  L   +        +    
Sbjct: 184 TTAHLFCELMRHLEDRGKTTLA 205


>gi|288560027|ref|YP_003423513.1| exonuclease [Methanobrevibacter ruminantium M1]
 gi|288542737|gb|ADC46621.1| exonuclease [Methanobrevibacter ruminantium M1]
          Length = 261

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 29/240 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N  + +D ET G +    +  +   + +    + IE  +            D     ITG
Sbjct: 44  NRIIFFDTETSGLNPNYCKIIELGMLVI-EDGKIIEEYDKL---INIGERIDSTITRITG 99

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    + +GV E + ++ + +     +  ++   N +FD  ++  +  R+    +    
Sbjct: 100 ITNDMLIDEGVSEGDVAQDLKEKL--ISGTLMIAYNCQFDLSFAYGLLKRH--YPHEAEA 155

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              + +W     +       P               K  D      I +VN H A  D  
Sbjct: 156 IIEDVKWLDPMTVFKDRKAYP--------------HKFSDAVEHYDIRNVNFHRAIGDAK 201

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
               +   +++++  L EY+        +        +  L      +     N ++++P
Sbjct: 202 GLYEVCLSLKDERDDLGEYI-------NVFGYNPRYGINGLKFPFIEYKKHYYNDSMVSP 254


>gi|126667360|ref|ZP_01738332.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
 gi|126628116|gb|EAZ98741.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
          Length = 236

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 57/197 (28%), Gaps = 33/197 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G D     R  +   V      E +E T     +          + EAV I 
Sbjct: 4   IVLDTETTGIDPNEGHRIIEIGCV------ELVERTLTGRNYHVYVNPGREVEAEAVAIH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +      +  A  +    +F        +  +N  FD  +    F R         
Sbjct: 58  GITNEFLADKPL-FAVVADEFFEFIRGAE---LVIHNAAFDVGFMDAEFGRL---DGGRK 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                   D L + R  +    +               L  L    G+++ N   H A  
Sbjct: 111 TAEHCGIVDTLAIARKRHPGQKN--------------NLNALCKRYGVDNSNRELHGALL 156

Query: 180 DVYATLALVWLIREKKP 196
           D      +  L+   + 
Sbjct: 157 DAEILADVYLLLTGGQT 173


>gi|110834086|ref|YP_692945.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2]
 gi|110647197|emb|CAL16673.1| DNA polymerase III, epsilon subunit [Alcanivorax borkumensis SK2]
          Length = 247

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G +     R  +   V +        ++   +     +   D  A+ + GI+
Sbjct: 4   VVLDTETTGLEPNDGHRVIEIGCVEM-ENRRLTGNSLHLY--LNPEREIDAGALAVHGIS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +           F + + +F +  +   +  +N  FD  +  +   R            
Sbjct: 61  SEFLADKPT----FDKVVDEFLAFVDGAELVIHNAPFDVGFLNHELRRLGTRYGTIEQR- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L + R  +    +               L  L     +E  H   H A  D  
Sbjct: 116 -CGVLDTLVMARQKHPGQKN--------------SLDALCRRYFVENGHRELHGALLDAE 160

Query: 183 ATLALVWLIREKKPKLFE 200
               +   +   + +LF 
Sbjct: 161 ILADVYLAMTGGQTRLFS 178


>gi|315022360|gb|EFT35388.1| DNA Pol III Epsilon Chain [Riemerella anatipestifer RA-YM]
 gi|325336512|gb|ADZ12786.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
           [Riemerella anatipestifer RA-GD]
          Length = 254

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 28/239 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
               I+D ET G +++ DR  +   ++V+       S E        +      A  + G
Sbjct: 7   KPLCIFDLETTGTNISKDRIVEICILKVNPD----ASRETKTWLVNPEMHIPAFATAVHG 62

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ +          E + +I +  S     + G+N+ RFD         R   D      
Sbjct: 63  ISDEDVKDAP-TLKEIAPKIMEMIS--GADLGGFNSNRFDVPLLAEEMLRAGVD------ 113

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 +DL  +                                      +AH A+AD  
Sbjct: 114 ------FDLSKMKLVDAQV--------IFHKMEPRNLSAAYQFYCNKTLEDAHSAEADTL 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL-VHVSGMFGASRSNTALI 240
           AT  ++     K  +L + +      +  +K  D+            +F   +    L+
Sbjct: 160 ATFEVLDAQVGKYEELPKDINGLSEFSYHQKFADLAGFIAFDDKGQEIFTFGKYKGQLV 218


>gi|254700203|ref|ZP_05162031.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261750696|ref|ZP_05994405.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
 gi|261740449|gb|EEY28375.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
          Length = 332

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I +        II  +N  FD  +                  
Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223

Query: 184 TLALVW 189
            LA++ 
Sbjct: 224 LLAVLK 229


>gi|78066765|ref|YP_369534.1| DNA-directed DNA polymerase [Burkholderia sp. 383]
 gi|77967510|gb|ABB08890.1| DNA-directed DNA polymerase [Burkholderia sp. 383]
          Length = 205

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    + DR  + A + + R  + ++  +              + V +
Sbjct: 1   MQTVAVLDFETTGLSPNMGDRATEIAVILL-RDGQVVDRFQSLM---NAGRRIPSDVVAL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +         +   +    F        +  +N  FD  + ++            
Sbjct: 57  TGITNEMIAAAP-PASNVMKEAAAFVGKH---AVVAHNAGFDKRFWQSELGILG------ 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                         M A +AF+   +        A S +L  L       +   AH A  
Sbjct: 107 --------------MSAEHAFACTMLVARRIYPDAQSHRLSSLVDMLRLPKSGRAHRAMV 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   ++    + +
Sbjct: 153 DAEMAGHLWCRLQHDIARTY 172


>gi|332983437|ref|YP_004464878.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 296

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N FV  D ET G + A+D+  + A V+  +  E I+S                 A  I  
Sbjct: 120 NEFVAIDLETTGLNPAIDKIVEIAAVKF-KYGEIIDSYTTL---INPGIHIPSSASKINH 175

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           IT +          + S  +    +     I+  +N  FD  + +    +  YD 
Sbjct: 176 ITDETVHGAP----DLSEVLPNLLNFIGDSILVMHNASFDLKFLKYHAAKLGYDI 226


>gi|253573313|ref|ZP_04850656.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846841|gb|EES74846.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 247

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 26/198 (13%)

Query: 7   IYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++D ET G      D    F  ++V+ +    +   V++             + +TGITP
Sbjct: 65  VFDLETTGFHYHYGDEILSFGAIKVEGE-RITDE--VYYSLAKPACQIPERIIELTGITP 121

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           + A             + +F +  +  ++  +    D  +     ++            G
Sbjct: 122 EMAQSAPS----LLEALREFMAFVDDRVLVAHGSAHDKAFLDVALWK------TTKAHLG 171

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +   D + + R +              D   S  L +      I     H A  D   T 
Sbjct: 172 HRVLDTMMIARKL------------EPDRRISGSLDEWLAVYEIPVTKRHHALEDSKMTA 219

Query: 186 ALVWLIREKKPKLFEYLY 203
            L   + ++  +      
Sbjct: 220 QLWTALIQRLKEQNVITL 237


>gi|148973897|ref|ZP_01811430.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3]
 gi|145965594|gb|EDK30842.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3]
          Length = 213

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 59/202 (29%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  ++ D+ET G    + DR  +   V++    E +++ +         +         T
Sbjct: 7   DSVIVLDFETTGLSPNMGDRAIEIGAVKL-VNGEVVDTFQQLM---NPGFRVSGFIEGYT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +          E       F        +  +N  FD  +          D     
Sbjct: 63  GITNRMLSTA-ASCGEVMDEFADFIQDSQ---LVAHNASFDKRFLDAELDYIGRDY---- 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
             NG     +L   R                  A + KL DL     I++    H A AD
Sbjct: 115 --NGQFACSMLIARR--------------LIQDAPTHKLGDLVRFKSIDNDGTFHRALAD 158

Query: 181 VYATLALVWLIREKKPKLFEYL 202
              T  L  L+ ++        
Sbjct: 159 SEMTARLWLLMIDELQSDHGIH 180


>gi|117920808|ref|YP_870000.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3]
 gi|117613140|gb|ABK48594.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3]
          Length = 242

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 59/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           VI D ET G +          R  +   V V            F          DPEA+ 
Sbjct: 11  VILDTETTGMNQGSGAVYLGHRIIEIGCVEV-INRRLTGRY--FHQYINPGQAIDPEAIA 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT ++   +     + ++    F S      I  +N  FD  +  + F  +      
Sbjct: 68  VHGITDERVANEPRFH-QIAQEFIDFISGAE---IVAHNANFDVSFMDHEF--SLLQPLG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                     D LD+ + ++    +               L  L    GI++     H A
Sbjct: 122 PKTSEICEILDSLDIAKFLHPGQKN--------------NLDALCKRYGIDNSRRLYHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +   +   + K 
Sbjct: 168 LLDAEILADVYLAMTGGQTKF 188


>gi|113970494|ref|YP_734287.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4]
 gi|114047729|ref|YP_738279.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7]
 gi|113885178|gb|ABI39230.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4]
 gi|113889171|gb|ABI43222.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7]
          Length = 242

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           VI D ET G +          R  +   V V             +         DPEA+ 
Sbjct: 11  VILDTETTGMNQGSGAVYLGHRIIEIGCVEV-INRRLTGRYYHQY--INPGQAIDPEAIA 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT ++   +     + ++    F S      I  +N  FD  +  + F  +      
Sbjct: 68  VHGITDERVANEPRFH-QIAQEFIDFISGAE---IVAHNANFDVSFMDHEF--SLLQPLG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
               +     D LD+ + ++    +               L  L    GI++     H A
Sbjct: 122 PKTSDICEILDSLDIAKFLHPGQKN--------------NLDALCKRYGIDNSRRLYHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +   +   + K 
Sbjct: 168 LLDAEILADVYLAMTGGQTKF 188


>gi|23500730|ref|NP_700170.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|161621054|ref|YP_001594940.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|254703325|ref|ZP_05165153.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|260567746|ref|ZP_05838215.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261753952|ref|ZP_05997661.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|23464383|gb|AAN34175.1| exonuclease, putative [Brucella suis 1330]
 gi|161337865|gb|ABX64169.1| Exonuclease RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154411|gb|EEW89492.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261743705|gb|EEY31631.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
          Length = 332

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I +        II  +N  FD  +                  
Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223

Query: 184 TLALVW 189
            LA++ 
Sbjct: 224 LLAVLK 229


>gi|295835840|ref|ZP_06822773.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|197698852|gb|EDY45785.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 239

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 18/193 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A +R+D         +              EA  I GI   +
Sbjct: 11  FDLETTGTDVEHDRVVTAAVIRLDASGAV---AQTRTWLLDPGIEIPAEATAIHGIPTAR 67

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A  +G         I +  +      T ++  N  R+D         R+   +       
Sbjct: 68  ARAEGAPARGAVAEITEALAAGLRAGTPLVVMNA-RYDLSLLDRECRRHGVPALA-ELLG 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G     +  ++   +A                S  L  L    G+   +AHDA++D  A 
Sbjct: 126 GEPAPVVDPLVLDKHA----------DRYRRGSRVLAALCEHYGVRLDSAHDARSDALAA 175

Query: 185 LALVWLIREKKPK 197
             L   +  + P+
Sbjct: 176 TLLARSLGARHPR 188


>gi|163867311|ref|YP_001608505.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
 gi|161016952|emb|CAK00510.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
          Length = 235

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 65/220 (29%), Gaps = 39/220 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61
           +I+D ET G D   DR  +   V      E ++       F         +   E V I 
Sbjct: 4   IIFDTETTGLDKEKDRIIEIGCV------EMVDRYLTGCQFHVYLNPEGVIIPDEVVAIH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T ++   +    ++      +F    N   +  +N  FD  +      R         
Sbjct: 58  GLTNERLKNE-KSFSDIVDEFLEFI---NGATMIAHNASFDIGFINAELKRVNKPLISVD 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                   D L + R  +   P+               L  L    GI++ +   H A  
Sbjct: 114 N-----IIDTLAMARRKFPMGPN--------------SLDILCKRFGIDNSHRVLHGALL 154

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           D      +   +   K      +  + NK  L + I    
Sbjct: 155 DAEILADVYIELIGGKQG----VLGFDNKRNLDEHIQNDT 190


>gi|332520058|ref|ZP_08396522.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332044617|gb|EGI80811.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 1453

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     IES E +  KP    +P 
Sbjct: 2   YLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCIES-EDYLVKPEGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A   GV   E   + +   +   T  +   N++FD       F R  
Sbjct: 61  -DAEKIHGISTELAQEQGVELIEVLEKFNIALNK--TKFVVGQNVKFDLNIMGAEFVRED 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
                       ++   L V+      +    Q P    G   FKL  L           
Sbjct: 118 I----------ANQLQELPVLDTCTEHTASLCQIPGGRGGR--FKLPTLTELHQYLFNQP 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKP 196
              AH+A ADV AT      +  ++ 
Sbjct: 166 FAEAHNATADVEATTRCFLELIRRQQ 191


>gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 1484

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 70/214 (32%), Gaps = 30/214 (14%)

Query: 5   FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     + P           Q A    D +   +E  +       D Y   
Sbjct: 2   YLIFDTETTGLPRNYNAPISDSENWPRAVQIAWQLHDEKGALLEHKDFLI--IPDGYTIP 59

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A   GV   +      +  S   T  I   NI FD +     FYR  
Sbjct: 60  YDAERIHGISTELATEQGVSIHKVFEEFEKALSK--TQYIVGQNIGFDIHIMGAEFYRYG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
                      ++  D L ++      + +  + P    G   FK  +L        G  
Sbjct: 118 V----------STVLDKLPILDTCSELTAELCKIPGGRAGK--FKYPNLTELHEFLFGTP 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYD 204
              AH+A ADV AT    + +  +          
Sbjct: 166 FAEAHNATADVEATARCFFELLRRNEGFSSSAIS 199


>gi|217970248|ref|YP_002355482.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217507575|gb|ACK54586.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 203

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 49/187 (26%), Gaps = 30/187 (16%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G   A  DR  + A V V R    ++  +                  +
Sbjct: 1   MEAVAVIDFETTGLSPAQGDRATEIAAVIV-RDGRVVDRYQSLM---NAGVRIPAHIESL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+           A+  R +  F        +  +N  FD  +      R        
Sbjct: 57  TGISNAMIRSAPTA-AQVMREVADFI---GGIPMVAHNAAFDAKFWDAELARIER----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
                  + D +  +                   A S +L  L     +      H A A
Sbjct: 108 -----ARKQDFVCSLLLSRRLF----------PLAPSHRLGALVEYARLPVAGRFHRALA 152

Query: 180 DVYATLA 186
           D     +
Sbjct: 153 DAEMAAS 159


>gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
 gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
          Length = 298

 Score = 88.0 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 32/195 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N + + D ET G     D   +   ++V    + ++           DY  D     +TG
Sbjct: 12  NDYCVLDTETTGLSSYYDEIIEIGILKVRDN-KIVDRYSQL---IKPDYEIDSFITSLTG 67

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       +       +  F       +I  +N  FD  +    F     + Y    
Sbjct: 68  ITNEMVKEMPAINF-VMSDVLSFI---GKDVIIGHNTSFDIRFLNAGFNIELDNKY---- 119

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    +D M+      P+              +L DL    G+ + N H + AD  
Sbjct: 120 ---------MDTMQFARKLFPELKH----------HRLSDLTSYLGLSN-NEHRSIADCI 159

Query: 183 ATLALVWLIREKKPK 197
           AT  L   I++   K
Sbjct: 160 ATKELYDSIKDTMTK 174


>gi|120436992|ref|YP_862678.1| exonuclease domain-containing protein [Gramella forsetii KT0803]
 gi|117579142|emb|CAL67611.1| protein containing exonuclease domain [Gramella forsetii KT0803]
          Length = 507

 Score = 88.0 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 85/333 (25%), Gaps = 34/333 (10%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M +  F I D ET G  +  +R  +   + V +  + I+                     
Sbjct: 1   MKDVKFAITDIETTGNGIKGNRITEICVIVV-QNGKVIDEYSSL---VNPSQAIPLYIET 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI  +         +E +  I +       CI   +N+ FD    R  F     D   
Sbjct: 57  LTGINDEMVFNAPQ-FSEIADEITKITKD---CIFVAHNVNFDYNIIRAEFASLDRDF-- 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                                             G  S+ L ++  +  I H++ H AK 
Sbjct: 111 ------------------KRKRLCTVRLTKKLIPGLFSYSLGNICTSINIPHIDRHRAKG 152

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLR----KLIDIQNMTPLVHVSGMFGASRS 235
           D  AT+ L        P+          K                   +     F   + 
Sbjct: 153 DCDATVTLFQRCISLDPEFEVINQLLNQKTAASYLPPNFKSSDFEKLPITTGVYFFKDKD 212

Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
              L    A + + +        S               +        L     + +K  
Sbjct: 213 GRPLYIGKAKNIKSRIKSHFQEKSNRKYKLMQETYSIDYELTGNELLALLRESELILKFF 272

Query: 296 -HLNKCPILMPIDYCKKEHFERWGIDHKRCLEN 327
              NK    +   Y    +  + GI+     +N
Sbjct: 273 PKYNKAQKKVSRPYTLTSYHNQKGIEQFALHKN 305


>gi|240849687|ref|YP_002971075.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup]
 gi|240266810|gb|ACS50398.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup]
          Length = 235

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 64/220 (29%), Gaps = 39/220 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61
           +I+D ET G D   DR  +   V      E ++       F         +   E V I 
Sbjct: 4   IIFDTETTGLDKEKDRIIEIGCV------EMVDRYLTGRQFHVYLNPEGVIIPDEVVAIH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T ++   +    ++      +F        +  +N  FD  +      R         
Sbjct: 58  GLTNERLKNE-KSFSDIVDEFLEFIK---GATMIAHNASFDIGFINAELKRVNKPLISVD 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                   D L + R  +   P+               L  L    GI++ +   H A  
Sbjct: 114 N-----ILDTLAMARRKFPMGPN--------------SLDILCKRFGIDNSHRVLHGALL 154

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           D      +   +   K      +  + N+  + + I    
Sbjct: 155 DAEILADVYIELIGGKQG----VLGFGNRRGVDEHIQNDK 190


>gi|156303079|ref|XP_001617467.1| hypothetical protein NEMVEDRAFT_v1g226058 [Nematostella vectensis]
 gi|156193984|gb|EDO25367.1| predicted protein [Nematostella vectensis]
          Length = 256

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 76/251 (30%), Gaps = 29/251 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D ET G DVA DR  + +  +V     K    E             P+   + GIT
Sbjct: 9   ICFFDLETTGIDVARDRIVEISVFKVFPNGNK----ESKTWLVNPTIPIPPQTTAVHGIT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +K   +     E +  ++      +  + G+N+ RFD         R            
Sbjct: 65  DEKVANEP-TFNELAPHVYNMIKDSD--LAGFNSDRFDIPLLAEELLRAG---------- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +D              +  +++   S   +           NAH A+AD  AT
Sbjct: 112 -------VDFDMKNRVSVDVQTIFHKKEERTLSAAYKFYCNQ---SLENAHSAEADTMAT 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTALIAPV 243
             ++    ++   L   +         +K +D      L      +F   +    L+  V
Sbjct: 162 YEILKAQLDRYEDLENDMKLLSEYTTRKKTVDFAGFITLNKEGKEVFSFGKHKGVLVEEV 221

Query: 244 AW-HPRYKDSV 253
               P Y   +
Sbjct: 222 LEKEPGYYSWL 232


>gi|126737494|ref|ZP_01753224.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
 gi|126720887|gb|EBA17591.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
          Length = 465

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 63/233 (27%), Gaps = 30/233 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITG 62
            F ++D ET G     D   Q   +RV           E         +     +  + G
Sbjct: 257 SFTVFDTETTGLLPHKDEIVQIGALRVVNGRLVNGEGFETL---VNPGFDIPAASTAVHG 313

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T +      ++        HQF       ++  +N  FD  + R     +  D      
Sbjct: 314 VTTEMVRNSPMI-KTAGAAFHQF---CKDSVLVAHNAPFDIAFLRRHAKSSGVDWN---- 365

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKAD 180
                   +LD +                   +    L  L     I    A  H A  D
Sbjct: 366 ------HMVLDTVLLSAVIF----------GASVPHTLDALCDRLEINIPEALRHTAMGD 409

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
             AT   +  +            D   +   +    ++++ P+ +    + A 
Sbjct: 410 AQATAEALLRMLPMLEARGFTTLDEVLEQTRQHGRLLEDLNPVDNHGSTWQAD 462


>gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 1572

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 26/191 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + AG+++ +   KI   + F                IT I
Sbjct: 480 TYVVFDLETTGLSNVRDKIIEIAGIKI-KNGNKIGEFQKF---IDPQQKLTKTITNITNI 535

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       ++    + + QF +    C++  +N  FD  +                  
Sbjct: 536 TDEMLQGQQTID----QVLPQFLAFAKDCVLVAHNASFDVDF---------LKEKAKELK 582

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++D M     +  + +++         F L+ LA    ++  + H A AD  A
Sbjct: 583 ISLEPKPIIDTMALSQRYFSNLLKY---------FSLKRLATVFKVKLEDHHRALADATA 633

Query: 184 TLALVWLIREK 194
           T  +   + ++
Sbjct: 634 TSEIFIKMIDQ 644


>gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
           ochracea F0287]
 gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
           ochracea F0287]
          Length = 1485

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 30/204 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D     I   + F  KP    +P 
Sbjct: 2   YLIFDTETTGLPRRWDAPLSDSDNWPRAVQIAWQLHDEWGALI-EHQDFLIKPDGFDVPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  + GI+ Q A   G+  AE  +  ++  S      +   NI FD       FYR  
Sbjct: 61  -DAEKVHGISTQLAEAQGMPIAEVFKAFNEALSKAQ--YVVGQNIGFDINIMGAEFYRYG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            +          S    + V+      + +  Q      G   +KL  L        GI 
Sbjct: 118 VE----------SPLTQMPVIDTCTEATANLCQIAGGKGGR--YKLPTLTELHSFLFGIP 165

Query: 171 HVNAHDAKADVYATLALVWLIREK 194
              AH+A ADV AT    + +  +
Sbjct: 166 FAEAHNATADVEATTRCFFELIRR 189


>gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 1446

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 27/202 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV++D ET G +       +   V++ +    +E                 +   +T 
Sbjct: 418 ESFVVFDLETMGLNSHEHEIIEIGAVKL-QGTRIVERYSQL---VNPKKPIPKKIQELTN 473

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+         +E E   +  +F        +  +N  FD  + R    +     Y    
Sbjct: 474 ISQDMVDNMPTIE-EVLPKFMEFV---GDSTMVAHNAPFDMGFIRRDVKKFMGYDY---- 525

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               +  D L + R +Y                 ++ L++L    G+   N H A  D  
Sbjct: 526 --KPAVIDTLQMARDLY-------------PELKAYGLKNLNKVLGLSLDNHHRAVDDSQ 570

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  +  +  EK  +      +
Sbjct: 571 ATANMFIIFIEKYMEKGITNLN 592


>gi|260769807|ref|ZP_05878740.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260615145|gb|EEX40331.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 205

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 54/185 (29%), Gaps = 30/185 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D+ET G    + DR  +   V++    +   + +         +         TGIT
Sbjct: 9   IVLDFETTGLSPNMGDRAIEIGAVKL-VDGQVAGTFQQLM---NPGFRVSGFIEGYTGIT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   E       F        +  +N  FD  +    F R            
Sbjct: 65  NTMLRTA-LPCEEVMAEFAHFI---GDTPLVAHNASFDKRFLDAEFDRIG---------- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183
                     +R    F+   +        A + KL DL     IE+    H A AD   
Sbjct: 111 ----------VRYPGQFACSMLIARRLIQNAPTHKLGDLVRFKQIENDGTFHRALADSQM 160

Query: 184 TLALV 188
           T +L 
Sbjct: 161 TASLW 165


>gi|256818923|ref|YP_003140202.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
           7271]
 gi|256580506|gb|ACU91641.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
           7271]
          Length = 442

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 75/251 (29%), Gaps = 32/251 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +     A  + +   E  +           +         +TGI 
Sbjct: 2   YAILDIETTGGKYNEEGITDIAIYQFNGH-EITDQFISL---INPERPIQEFVTKLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++RI +  +    CII  +N  FD    +  F R  YD        
Sbjct: 58  NKMLRNAPK-FYEVAKRIVEITTD---CIIVGHNAAFDYRILQTEFRRLGYDF------- 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                        +                  S+ L  L  + GI   + H A  D  AT
Sbjct: 107 -------------VRTTLCTVELSERLIPNKESYSLGKLVRSLGIPVSDRHRASGDALAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV--SGMFGASRSNTALIAP 242
           L L   + EK  K  + +     K  +R  +  +++  L  +  +       +    +  
Sbjct: 154 LKLFKYLLEKDTK--KDIITTSVKQDIRLEMASRHLKILDTLPETLGIFYMHNEEGKVIY 211

Query: 243 VAWHPRYKDSV 253
           +  H   K  V
Sbjct: 212 IGKHKNIKQQV 222


>gi|225686761|ref|YP_002734733.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256262103|ref|ZP_05464635.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|225642866|gb|ACO02779.1| Exonuclease RNase T and DNA polymerase III [Brucella melitensis
           ATCC 23457]
 gi|263091793|gb|EEZ16124.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|326411169|gb|ADZ68233.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326554460|gb|ADZ89099.1| DNA polymerase III subunit epsilon [Brucella melitensis M5-90]
          Length = 332

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I +        II  +N  FD  +                  
Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223

Query: 184 TLALVW 189
            LA++ 
Sbjct: 224 LLAVLK 229


>gi|163755942|ref|ZP_02163059.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
 gi|161324113|gb|EDP95445.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
          Length = 257

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 82/256 (32%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N    +D ET G +VA DR  + A ++V     K    E        +     E   I
Sbjct: 5   LKNPICFFDLETTGVEVAKDRIVEIAILKVYPNGNK----ESKTWLVNPEMPIPAETSEI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT  K   +     E S+ I+      +  + GYN+ RFD         R   D    
Sbjct: 61  HGITDDKVANEP-TFKELSKEIYNMIKDSD--LAGYNSDRFDIPLLAEELLRADID---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +D+ + +          ++  +       +         G E   AH A+AD
Sbjct: 114 --------FDMKNKVSIDVQTIFHKMEKRTLSAAYKFY--------CGKELEGAHGAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH-VSGMFGASRSNTAL 239
             AT  ++    ++  +L   +         +K  D             +F   +     
Sbjct: 158 TNATYEVLKSQLDRYDELENDVKKLSEFTTRKKTADFAGFIIFDKDGEEIFSFGKHKGKK 217

Query: 240 IAPVA-WHPRYKDSVI 254
           +A V    P Y   ++
Sbjct: 218 VAKVLDEEPGYFGWIL 233


>gi|160882256|ref|ZP_02063259.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483]
 gi|260173820|ref|ZP_05760232.1| DNA Pol III epsilon chain [Bacteroides sp. D2]
 gi|299146573|ref|ZP_07039641.1| exonuclease [Bacteroides sp. 3_1_23]
 gi|315922083|ref|ZP_07918323.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112345|gb|EDO14090.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483]
 gi|298517064|gb|EFI40945.1| exonuclease [Bacteroides sp. 3_1_23]
 gi|313695958|gb|EFS32793.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 259

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +   T     +   +      +  I
Sbjct: 5   LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTL----RINPEMHIPEASSAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI     +       E ++ I +        + G+N+ RFD       F R        
Sbjct: 61  HGIYDADVVDCP-TFKEVAKNIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+      F    + +   +    S   +     N     +AH A+AD
Sbjct: 112 -----------VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCDKN---LEDAHTAEAD 157

Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  ++   +        +  +     +  + +     M    +   +F   +     
Sbjct: 158 TRATYEVLKAQLDRYSDLQNDIAFLADYSSFSKNVDFAGRMVYDDNGVEVFNFGKYKGMS 217

Query: 240 IAPVA-WHPRYKDSVI 254
           +A V    P Y   ++
Sbjct: 218 VAEVLKKDPGYYSWIL 233


>gi|291527626|emb|CBK93212.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eubacterium rectale M104/1]
          Length = 260

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 54/189 (28%), Gaps = 28/189 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            ++ + D E  G     D+  +    RV R  E +++                    +TG
Sbjct: 23  KNYTVIDLEMTGLSAKNDKIIEIGAARV-RGGEIVDTISTL---VNPKQHIPQRVQELTG 78

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT           A+    +          II   N+ FD  + +     +         
Sbjct: 79  ITDSDVENA----ADMDVAVDNLLDFIGDDIILGQNVTFDYSFLKQWAVNH-------KR 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               + +D L + R                    S KL+DL     +   NAH A  D  
Sbjct: 128 TLSLNAYDTLKIARKC-------------LPAEQSKKLEDLCEYFDVSRENAHRALDDAI 174

Query: 183 ATLALVWLI 191
            T  +   +
Sbjct: 175 ETKQIFEKL 183


>gi|281355577|ref|ZP_06242071.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281318457|gb|EFB02477.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 268

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 17/146 (11%)

Query: 1   MTNHF------VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M  +       V++D E+ G     DR  + A +++         T+    +   +    
Sbjct: 1   MMQNLQLERPLVVFDIESTGVMPQRDRIVEIAVLKIFPDGH----TQNTVRRLNPEMPIP 56

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P A  I GI+              + ++ ++    +  + GYN   FD       F R  
Sbjct: 57  PGATAIHGISDADVADCP-TFLLIAEKLFRYIEDCD--LAGYNITGFDIPMLEAEFKRAG 113

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYA 140
           +        +     D  ++   +Y 
Sbjct: 114 F----TFKVDDRKVIDAYNIFCKLYP 135


>gi|288926239|ref|ZP_06420165.1| exonuclease [Prevotella buccae D17]
 gi|315606363|ref|ZP_07881379.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574]
 gi|288337018|gb|EFC75378.1| exonuclease [Prevotella buccae D17]
 gi|315252054|gb|EFU32027.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574]
          Length = 284

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 7/117 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   V++D ET G D+  DR  Q + ++V     ++   E+            PE   +
Sbjct: 5   LTKPLVVFDLETTGLDLVNDRVIQLSYIKVCPDGTELRGNEI----INPGKPIAPEITAL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           TGI+            E + R+ + F        G+N+  FD       F R   D 
Sbjct: 61  TGISDDDVKDRPA-FKELAPRLAEEFK--GCDFAGFNSNHFDIPMLAEEFLRAGIDF 114


>gi|85713113|ref|ZP_01044147.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145]
 gi|85693061|gb|EAQ31025.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145]
          Length = 236

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 32/211 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61
           ++ D ET G +     R  +   V      E I+       F      + + + EA+ + 
Sbjct: 4   IVLDTETTGINPDDGHRIIEIGCV------ELIDRKPTGNHFHVYINPERVVEDEAIAVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +      V    F++ +  F        +  +N  FD  +    F R         
Sbjct: 58  GITNEYLADKPV----FAQVVDAFIDFIKGSQLVIHNAPFDVGHMDAEFKRLG-----KM 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
           +       D+LD ++      P                L  L  A  +++     H A  
Sbjct: 109 YGKTYDYCDVLDSLQLAREKRPGQRN-----------SLDALCKAFHVDNSARELHGALL 157

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
           D      +   +   +  L  +  +  N+NQ
Sbjct: 158 DAEILADVYLAMTGGQTALSLHGQNQDNENQ 188


>gi|315224228|ref|ZP_07866068.1| exonuclease [Capnocytophaga ochracea F0287]
 gi|314945961|gb|EFS97970.1| exonuclease [Capnocytophaga ochracea F0287]
          Length = 258

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 79/257 (30%), Gaps = 29/257 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++     +D ET G D+  DR  + + ++V     K    E               A  +
Sbjct: 5   LSKPICFFDLETTGIDITKDRIVEISILKVYPNGNK----ESKTWLVNPTIPIPKAASDV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT ++   +     E +++IH      +  + GYN+ RFD         R   D    
Sbjct: 61  HGITDERVAGEP-TFKELAKQIHNMIKDSD--LAGYNSDRFDIPLLAEEMLRAEVDFDL- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+  +   +   +                         G + ++AH A AD
Sbjct: 117 ---GNRVSVDVQTIFHKMEQRTLS----------------AAYKFYCGKDLIDAHTASAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239
             AT  ++    ++   L   +         +++ D             +F   +     
Sbjct: 158 TNATYEILKAQLDRYDSLENNIKKLSEFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKR 217

Query: 240 IAPVA-WHPRYKDSVIG 255
           +  +    P Y   ++G
Sbjct: 218 VEDIFDEEPGYFGWLLG 234


>gi|239928032|ref|ZP_04684985.1| DNA polymerase III [Streptomyces ghanaensis ATCC 14672]
 gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 631

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     DR    A + +    E+                P P  V + G+T ++
Sbjct: 23  VDVETSGLMARRDRVLSVAVITIGPDGEQTGEFSTL---LNPGCDPGP--VEVHGLTVER 77

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                    + + RI          ++  +N +FD  +  + F R         W   + 
Sbjct: 78  LQGAP-TFDQVAGRIGAMLQ---GRVLVAHNAQFDYDFLAHEFAR------ARMWLPVSQ 127

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
           R   L + R +             D      KL  LA   G+    AHDA  D      +
Sbjct: 128 RLCTLALNRQV-------------DPPTDDMKLGTLAAHYGVSRQRAHDALDDTRVLAGI 174

Query: 188 VW 189
           + 
Sbjct: 175 LR 176


>gi|210621010|ref|ZP_03292395.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275]
 gi|210154994|gb|EEA86000.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275]
          Length = 276

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 72/201 (35%), Gaps = 25/201 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++++D ET G +   +   + A ++ D   E +E    +            +   +TGIT
Sbjct: 96  YIVFDLETTGLEAHKEAITEIAAIKFDYD-EPVEYFHTY---VNPKKKIREKITDLTGIT 151

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       +E      +  F    +   +  +N+ FD  +  +  Y   Y         
Sbjct: 152 NEMVASAPPIEY----VLPNFLKFIDKYTLISHNVSFDMSFILDPMYNLGYK------KP 201

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV----NAHDAKAD 180
           GN   D L + R         ++        +S+KL+DL    G+        +H+A  D
Sbjct: 202 GNKAIDTLALARRF-------MKDEDTGKRLSSYKLEDLKYQLGLPLDVYDIKSHNALYD 254

Query: 181 VYATLALVWLIREKKPKLFEY 201
                 L    RE K + ++Y
Sbjct: 255 TKVAYFLYKNCRELKEEYYKY 275


>gi|332876762|ref|ZP_08444520.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685321|gb|EGJ58160.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 256

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 77/260 (29%), Gaps = 39/260 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G ++  DR  +   ++V     +    E    +   +      +  I GI  
Sbjct: 10  VFFDLETTGINITTDRIVELCYIKVYPNGNE----ESKSMRINPEMHIPESSSAIHGIYD 65

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          + +R +            G+N+ RFD       F R   D         
Sbjct: 66  EDVADCP-TFKQVARELANTIK--GCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKF- 121

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D+ ++   +   +                         G +  NAH A AD  AT 
Sbjct: 122 ---IDVQNIYHKLERRTLS----------------AAYKFYCGKDLENAHSALADTRATY 162

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245
            ++    +  P+          KN +  L D   MT  V  +G      +   +      
Sbjct: 163 EVLMAQLDHYPED--------LKNDVAFLSDFSRMTDNVDFAGRMVYDENRDVVFNFG-- 212

Query: 246 HPRYKDSVIGCNLSGDMRVF 265
             +YK   +   L  D   +
Sbjct: 213 --KYKGKKVTDVLRTDPGYY 230


>gi|306846211|ref|ZP_07478773.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
 gi|306273462|gb|EFM55323.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
          Length = 332

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I          II  +N  FD  +                  
Sbjct: 134 TDEMVKGRTIPRDELDALI------AGADIIIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 +   +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 170 -----LERFSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223

Query: 184 TLALVW 189
            LA++ 
Sbjct: 224 LLAVLK 229


>gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37]
 gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           genitalium G37]
 gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 1451

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 68/486 (13%), Positives = 155/486 (31%), Gaps = 52/486 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FVI+D ET G     D   +F+  ++ +   +I+  + F      D         IT I
Sbjct: 415 TFVIFDIETTGLHGRYDDVIEFSARKI-KNNSEIDHQQFF---LKIDKPIPKTITEITKI 470

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +     G+ + +   +I  +       ++ +N I FD  + +  F +           
Sbjct: 471 TDEMLEG-GIDQQQGLEKIRNYLDDC--VMVAHNGINFDLPFLQTQFEKYNIKPL----- 522

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
             N   D L +  A+                 +S  L ++     +E  +   H A+ D 
Sbjct: 523 -TNPLIDTLCLSWALNPLF-------------SSHTLSNICSKLKLEFDDERLHRAEYDT 568

Query: 182 YATLALVWLIREKKPKLFEYLY----DYRNKNQLRKLIDI-QNMTPLVHVSGMFGASRSN 236
            A   + +  +++  ++            NK     L+      T +V+V    G     
Sbjct: 569 EALKKVFFYFKKQLKEMGINTLTEIDQNLNKKCQIDLMKRVFTNTAIVYVKNQRGFQNLY 628

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296
             L   +  H   +  V+  +L+   + F   ++         +  +    +   I++V 
Sbjct: 629 EMLSIALTDHNANRPLVLASSLAKFRKSFLLTENPVQGDIFKAALTKPINELEKAIEKVD 688

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
                +L+        +  R G+  +   + + L+ +      +  A+ +  Y     + 
Sbjct: 689 F----VLISQPNAYLGYTLREGLKKELINDAIKLVIKTATKLKKLVAVASDAYFIHPWEN 744

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQ-LSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
           +          +  +          EQ +  + L  +D  L  + F     +  + L  +
Sbjct: 745 EYYKAIVCAKGLGGKWHRHFNNKEKEQTVPEVFLHTTDEMLKRMSF--LGEDIAYKLVVE 802

Query: 416 EKQDWLEHR--------KKMLTRSRIEEYKNKL----QSLSGEYKGDEGKEGLINALYEY 463
                ++          K  L    +++   KL       + +  G    + +   + + 
Sbjct: 803 NTNKIVKLLDLNELVPTKNKLYPPVMQDSNQKLIDKTWKQAEKRYGKNLPKLIKERIEKE 862

Query: 464 LQWVIP 469
           L  +I 
Sbjct: 863 LNAIIS 868


>gi|256015766|ref|YP_003105775.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|255998426|gb|ACU50113.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 332

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I +        II  +N  FD  +                  
Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223

Query: 184 TLALVW 189
            LA++ 
Sbjct: 224 LLAVLK 229


>gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG
           catalytic domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia glumae BGR1]
          Length = 381

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 45/194 (23%), Gaps = 29/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G      R  +   V V            +                +TGIT
Sbjct: 19  LAFVDLETTGGSATEHRITEIGVVEVGPNG-----VSTWSSLIDPCQPIPAFIQQLTGIT 73

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A  +  ++             +N  FD  + R  F R  Y         
Sbjct: 74  DAMVRGAP-SFASIAAALYARLE---GRFFIAHNASFDRGFLRAEFERAGYAFNP----- 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 125 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALVPNARHRALADADLV 169

Query: 185 LALVWLIREKKPKL 198
                 + E  P  
Sbjct: 170 WQFWRRLHETIPSE 183


>gi|62317837|ref|YP_223690.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|83269816|ref|YP_419107.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148558112|ref|YP_001257920.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|189023090|ref|YP_001932831.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690675|ref|ZP_05153929.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254696020|ref|ZP_05157848.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254699129|ref|ZP_05160957.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705536|ref|ZP_05167364.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|254710765|ref|ZP_05172576.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254732573|ref|ZP_05191151.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256029148|ref|ZP_05442762.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256043877|ref|ZP_05446797.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111058|ref|ZP_05452120.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157340|ref|ZP_05455258.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253680|ref|ZP_05459216.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256255857|ref|ZP_05461393.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260167759|ref|ZP_05754570.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260545071|ref|ZP_05820892.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260565052|ref|ZP_05835537.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260756251|ref|ZP_05868599.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260760381|ref|ZP_05872729.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260763621|ref|ZP_05875953.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882073|ref|ZP_05893687.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|261216447|ref|ZP_05930728.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|261220817|ref|ZP_05935098.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261312940|ref|ZP_05952137.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261318335|ref|ZP_05957532.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261757195|ref|ZP_06000904.1| exonuclease [Brucella sp. F5/99]
 gi|265986133|ref|ZP_06098690.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|265990297|ref|ZP_06102854.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265992595|ref|ZP_06105152.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|265995827|ref|ZP_06108384.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|297249226|ref|ZP_06932927.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|62198030|gb|AAX76329.1| hypothetical exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|82940090|emb|CAJ13133.1| Exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148369397|gb|ABQ62269.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021664|gb|ACD74385.1| Exonuclease [Brucella abortus S19]
 gi|260098342|gb|EEW82216.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260152695|gb|EEW87788.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260670699|gb|EEX57639.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260674042|gb|EEX60863.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676359|gb|EEX63180.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260871601|gb|EEX78670.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|260918054|gb|EEX84915.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|260919401|gb|EEX86054.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261297558|gb|EEY01055.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261301966|gb|EEY05463.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261737179|gb|EEY25175.1| exonuclease [Brucella sp. F5/99]
 gi|262550124|gb|EEZ06285.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|262763465|gb|EEZ09497.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|263000966|gb|EEZ13656.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|264658330|gb|EEZ28591.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|297173095|gb|EFH32459.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
          Length = 332

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I +        II  +N  FD  +                  
Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223

Query: 184 TLALVW 189
            LA++ 
Sbjct: 224 LLAVLK 229


>gi|260437725|ref|ZP_05791541.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876]
 gi|292809747|gb|EFF68952.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876]
          Length = 234

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 63/218 (28%), Gaps = 29/218 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   FV  D ET G     ++  +   VR  R  + ++                     I
Sbjct: 1   MIKDFVAIDLETTGLSPYDNKIIELGAVRY-RDGKPVDQYNTL---INPGVHIPERITEI 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI      +   ++ E   RI +F       +I  +N+ FD  +       +  +    
Sbjct: 57  TGIDDDMVSKAPYIDDE-LDRIMEFI---GNDVILGHNVIFDYTFIAGALAGHSIE---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L   + +                  S  L+ L     I  ++ H A  D
Sbjct: 109 ---YSAEAIDTLKFAKKV-------------LPANESKNLEHLCEMFDIVTIH-HRAYED 151

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
             +   + + + E   +       +  K +   +   Q
Sbjct: 152 AMSAANVYFRLCELSGEETIVEQYHFKKQKAAGITPKQ 189


>gi|146329568|ref|YP_001209798.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus
           VCS1703A]
 gi|146233038|gb|ABQ14016.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus
           VCS1703A]
          Length = 233

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 66/230 (28%), Gaps = 37/230 (16%)

Query: 6   VIYDYETFGRDVALD------RPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPE 56
           VI+D ET G +   D      R  +   V      E I+       F C    +   DP+
Sbjct: 6   VIFDTETTGMNFESDNKAEGHRIIEIGCV------ELIDRVPTEHYFHCYLNPEQPVDPQ 59

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A  + GI+ +          +       + +  +   +  +NI FD  +          D
Sbjct: 60  AFKVHGISDEFLADKP-FFKDVLPEFEAYLASADE--LVAHNIAFDRQFIDRELQLAGCD 116

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +   +  +  D L + R  +A + +               L  L    G+++     
Sbjct: 117 ---YRLGDKFTLVDSLKIAREKFAGARN--------------NLDALCKRFGVDNTGREL 159

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
           H A  D      +   +   +  L        +  +  +           
Sbjct: 160 HGALLDAQLLAEVYLKLTGGQSDLSFAHPMMASARRAEQKTAATFAKTPC 209


>gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 1419

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 26/194 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T   V +D ET G + + D   + A       ++ IE+   F           P  V I 
Sbjct: 762 TYRIVFFDIETTGLNPSTDAIVEVAM------FDPIEN-STFHTLVNPQRPISPRTVGIH 814

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFYRN 113
            IT +       V+   ++ I Q+  +            ++G+N    D    R      
Sbjct: 815 HITNEMVRDAPTVDV-VAKSIGQYLRLDMASYNPHEILVLVGHNVFSLDQPMLRRALECY 873

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAI-----YAFSPDGIQWPSRDDGATSFKLQDLALANG 168
             +       +G    D L ++ +      +    +    P  +  A+S +L  L  A  
Sbjct: 874 APEC----QLDGVLFCDSLALLNSHRSVLRWRLRGNRANQPLMEALASSLRLSRLITALN 929

Query: 169 I-EHVNAHDAKADV 181
           +    + H A  D 
Sbjct: 930 VRPEGDLHRADTDT 943


>gi|311694693|gb|ADP97566.1| DNA polymerase 3, epsilon subunit [marine bacterium HP15]
          Length = 239

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 33/197 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G D A   R  +   V      E +E       +      D   + EA+ + 
Sbjct: 7   IVLDTETTGIDPAEGHRIIEIGCV------ELMERQLTGRNYHVYINPDREVEAEAITVH 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +         AE +    +F        +  +N  FD  +  + F R         
Sbjct: 61  GITNEFLADKPR-FAEIADEFFEFIKGAE---LVIHNAAFDVGFMDSEFARL---KPVRK 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
             +     D L + RA +    +               L  L    G+++ N   H A  
Sbjct: 114 TADHCGIVDSLAIARARHPGQKN--------------NLDALCKRYGVDNSNRDLHGALL 159

Query: 180 DVYATLALVWLIREKKP 196
           D      +  L+   + 
Sbjct: 160 DAEILADVYLLLTGGQT 176


>gi|78065897|ref|YP_368666.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383]
 gi|77966642|gb|ABB08022.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 244

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE + +I  F       I   +N  FD  +    F R     +      
Sbjct: 61  TEFLSDKPK-FAEVANQIRDFVQDAELII---HNAPFDLGFLDAEFARLDLPPFTKHCGG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|294853961|ref|ZP_06794633.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819616|gb|EFG36616.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 332

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I +        II  +N  FD  +                  
Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTVRGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223

Query: 184 TLALVW 189
            LA++ 
Sbjct: 224 LLAVLK 229


>gi|256058832|ref|ZP_05449048.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261322770|ref|ZP_05961967.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
 gi|261298750|gb|EEY02247.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
          Length = 332

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 55/186 (29%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I +        II  +N  FD  +                  
Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L +  A   ++    +      G    KL  L   +G  H   H A+ D  A
Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFHSG-HRAEDDCQA 223

Query: 184 TLALVW 189
            LA++ 
Sbjct: 224 LLAVLK 229


>gi|227510342|ref|ZP_03940391.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227189994|gb|EEI70061.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 945

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 28/204 (13%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              + + D ET G D+++D R  QF+   V    + +E+                  + +
Sbjct: 4   KTTYAVVDIETTGTDMSVDNRIIQFSCTLV-AHGKIVETYVS---DINPQREVPERIIQL 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP++  +      + S ++++  S     +   +N+ FD  +    F R  Y     
Sbjct: 60  TGITPERLKKAP-TFDQVSSKLYKLLS---GTVFVAHNVNFDFPFLNGEFQRVGYPEL-- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    + +D +       P            +S++LQDL+    I H + H A +D
Sbjct: 114 -------DIEAIDTVTLSQILLPTL----------SSYRLQDLSAYFNIIHNHPHTADSD 156

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  L+ ++  +   L     +
Sbjct: 157 ALATAKLLLILLRQVKMLPRRTLE 180


>gi|306840939|ref|ZP_07473681.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
 gi|306289062|gb|EFM60324.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
          Length = 332

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I          II  +N  FD  +                  
Sbjct: 134 TDEMVKGRTIPRDELDALI------AGADIIIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 +   +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 170 -----LERFSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223

Query: 184 TLALVW 189
            LA++ 
Sbjct: 224 LLAVLK 229


>gi|295133095|ref|YP_003583771.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294981110|gb|ADF51575.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 257

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 78/241 (32%), Gaps = 28/241 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G ++A DR  + A ++V     K    E        +     E + I
Sbjct: 5   LTKPICFFDLETTGTNLAKDRIVEIAILKVYPNGNK----ESRTWLVNPEMEIPKEVIAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +K   +     E S++I+         + GYN+ RFD         R   D    
Sbjct: 61  HGISNEKVANEP-TFKELSKQIYDMIK--GCDLGGYNSNRFDIPLLAEELLRADID---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                       D+   +            +   A +FK        G E ++AH A AD
Sbjct: 114 -----------FDMKNMMAVDVQTIFHKKEQRTLAAAFKF-----YCGKELIDAHSAAAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239
             AT  ++    +K   L   +      +  +   D             +F   +    L
Sbjct: 158 TEATYEVLKSQLDKYDDLENDIKWLSQYSARKSFADFAGFISFNKKGEEIFSFGKYRGKL 217

Query: 240 I 240
           +
Sbjct: 218 V 218


>gi|85058570|ref|YP_454272.1| DNA polymerase III subunit epsilon [Sodalis glossinidius str.
           'morsitans']
 gi|84779090|dbj|BAE73867.1| DNA polymerase III epsilon subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 252

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 62/223 (27%), Gaps = 30/223 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGRH--FHVYLKPDRLVDPEAFNV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +     F        +  +N  FD  +    F          
Sbjct: 66  HGISDEFLADKP-TFADVADEFLHFIRGGE---LVIHNAPFDIGFMDYEFGMLNR----- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
               G ++ D    +      +                 L  L     I++     H A 
Sbjct: 117 ----GIAKTDTFCKVTDSLLLARKMF-------PGKRNSLDALCDRYLIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            D      +  L+   +  +   +   + +  + + + IQ + 
Sbjct: 166 LDAEILADVFLLMTGGQTAMRFAMEGEQEQRDVGETVQIQRVQ 208


>gi|86141808|ref|ZP_01060332.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
           MED217]
 gi|85831371|gb|EAQ49827.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
           MED217]
          Length = 1460

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 68/204 (33%), Gaps = 30/204 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G                R  Q A    D     I   E +  +P    +P 
Sbjct: 2   YLIFDTETTGLPKNWSAPITDSDNWPRAIQIAWQLHDDMGNCI-EHEDYLIRPDGFDIPF 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A RDG+   E   +         T  +   N+ FD       F+R  
Sbjct: 61  -DAERIHGISTELAQRDGLPLGEVLGKFKAALER--TKFVVGQNVGFDVNIMGAEFHRL- 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
                    +  ++   L V+      +    Q P    G   FKL  L           
Sbjct: 117 ---------DVTNQLQELPVLDTCTETTAQLCQIPGGRGGK--FKLPTLTELHQYLFNQP 165

Query: 171 HVNAHDAKADVYATLALVWLIREK 194
              AH+A ADV AT    + +  +
Sbjct: 166 FAEAHNATADVEATTRCFFELVRR 189


>gi|323339821|ref|ZP_08080090.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
 gi|323092694|gb|EFZ35297.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
          Length = 968

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 30/201 (14%)

Query: 1   MTN--HFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M+N   + + D E  G +    +R  QF+ V  +   + + +                + 
Sbjct: 34  MSNLQTYAVVDLEMTGTNPNGSERLIQFSCVFTEGN-KIVNTFSTL---INPLRKIPEDV 89

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T IT +          E +  I+   S     +   +NI  D  +  + F R  +  
Sbjct: 90  QNLTNITDKDVKSAP-TFDEVAGTIYALLSD---TVFVAHNIELDYRFLNSEFERIGFP- 144

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                       D + + +  +                 S++L DLA   G +H + H A
Sbjct: 145 -----KLDLEGIDTVQLAQIAF-------------PTLASYRLGDLAHFLGFKHKHPHHA 186

Query: 178 KADVYATLALVWLIREKKPKL 198
            +D + T  L  L+++K   +
Sbjct: 187 DSDAFVTAELFILLQKKLASM 207


>gi|146299070|ref|YP_001193661.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
 gi|146153488|gb|ABQ04342.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
          Length = 1510

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 73/204 (35%), Gaps = 30/204 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D          R  Q A    D   + I   + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLI-EHQDYLVKPEGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A  DG+  AE   + +   S   T  I   N+ FD       F+R  
Sbjct: 61  -DAERIHGISTELAEADGITLAEVLEKFNIALSK--TKFIVGQNLGFDVNIMGAEFHRMG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI----E 170
            +          S+   + V+      +   +Q P    G   FKL  L   +       
Sbjct: 118 VE----------SQMASMPVLDTCTEVTASLLQLPGGRGGK--FKLPTLTELHSYLFDQP 165

Query: 171 HVNAHDAKADVYATLALVWLIREK 194
              AH+A ADV AT      +  +
Sbjct: 166 FAEAHNATADVEATTRCFLELVRR 189


>gi|227524493|ref|ZP_03954542.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088363|gb|EEI23675.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           hilgardii ATCC 8290]
          Length = 945

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 28/204 (13%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              + + D ET G D+++D R  QF+   V    + +E+                  + +
Sbjct: 4   KTTYAVVDIETTGTDMSVDNRIIQFSCTLV-AHGKIVETYVS---DINPQREVPERIIQL 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP++  +      + S ++++  S     +   +N+ FD  +    F R  Y     
Sbjct: 60  TGITPERLKKAP-TFDQVSSKLYKLLS---GTVFVAHNVNFDFPFLNGEFQRVGYPEL-- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    + +D +       P            +S++LQDL+    I H + H A +D
Sbjct: 114 -------DIEAIDTVTLSQILLPTL----------SSYRLQDLSTYFNIIHNHPHTADSD 156

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  L+ ++  +   L     +
Sbjct: 157 ALATAKLLLILLRQVKMLPRRTLE 180


>gi|193212627|ref|YP_001998580.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327]
 gi|193086104|gb|ACF11380.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB
           8327]
          Length = 232

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 17/187 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVIYD ET G D   DR      V    + E I+  + F      +   + +AV + G+ 
Sbjct: 45  FVIYDTETTGFDFRHDRIISIGAVGT--KGEVIDIADSFEVLLRQEVCSERDAVTVHGLL 102

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +     G+ E+E   R   +    N  I+ ++        ++ +  R            
Sbjct: 103 KRDI-DSGLEESEAVCRFLDYL--GNAVIVAHHADFDIAMINQVLSRRFGM--------- 150

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R     +  A +A   +   + +       ++L +L    GI   + H A  D Y T
Sbjct: 151 ---RLFNEALDTASFAKRLEKGPYYNLAHKGGEYRLDNLCARYGIRLYDRHTAPGDAYLT 207

Query: 185 LALVWLI 191
             L   +
Sbjct: 208 AQLFQRL 214


>gi|84385238|ref|ZP_00988270.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01]
 gi|84379835|gb|EAP96686.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01]
          Length = 207

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 30/199 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  ++ D+ET G    + DR  +   V++    E +++ +         +         T
Sbjct: 7   DSVIVLDFETTGLSPNMGDRAIEIGAVKL-VNGEVVDTFQQLM---NPGFRVSGFIESYT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +         +E       F        +  +N  FD  +          D     
Sbjct: 63  GISNRMLSTA-ASCSEVMDEFADFIQ---GSQLVAHNASFDKRFLDAELDFIGRD----- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180
                              F+   +        A + KL DL    N       H A AD
Sbjct: 114 ---------------YTGKFACSMLIARRLIQDAPTHKLGDLVRFKNIDNDGTFHRALAD 158

Query: 181 VYATLALVWLIREKKPKLF 199
              T  L  L+ ++     
Sbjct: 159 SEMTARLWLLMIDELQSDH 177


>gi|227513350|ref|ZP_03943399.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           buchneri ATCC 11577]
 gi|227083223|gb|EEI18535.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           buchneri ATCC 11577]
          Length = 945

 Score = 87.6 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 28/204 (13%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              + + D ET G D+++D R  QF+   V    + +E+                  + +
Sbjct: 4   KTTYAVVDIETTGTDMSVDNRIIQFSCTLV-AHGKIVETYVS---DINPQREVPERIIQL 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP++  +      + S ++++  S     +   +N+ FD  +    F R  Y     
Sbjct: 60  TGITPERLKKAP-TFDQVSSKLYKLLS---GTVFVAHNVNFDFPFLNGEFQRVGYPEL-- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    + +D +       P            +S++LQDL+    I H + H A +D
Sbjct: 114 -------DIEAIDTVTLSQILLPTL----------SSYRLQDLSTYFNIIHNHPHTADSD 156

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  L+ ++  +   L     +
Sbjct: 157 ALATAKLLLILLRQVKMLPRRTLE 180


>gi|225629458|ref|ZP_03787491.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
 gi|225615954|gb|EEH13003.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
          Length = 379

 Score = 87.6 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 180

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I +        II  +N  FD  +                  
Sbjct: 181 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 216

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 217 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 270

Query: 184 TLALVW 189
            LA++ 
Sbjct: 271 LLAVLK 276


>gi|209517197|ref|ZP_03266042.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209502333|gb|EEA02344.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 244

 Score = 87.6 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 56/201 (27%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   LILDTETTGLNPRGGDRILELGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE   +   F    +  I   +N  FD  +    F              
Sbjct: 61  TEFLSDKPK-FAEIIDQFRDFIQDADLII---HNAPFDIGFLDTEFALLGLPPVS---TY 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 114 CGEIIDTLAQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180


>gi|254720591|ref|ZP_05182402.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265985632|ref|ZP_06098367.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306838555|ref|ZP_07471392.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
 gi|264664224|gb|EEZ34485.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306406341|gb|EFM62583.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
          Length = 332

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I          II  +N  FD  +                  
Sbjct: 134 TDEMVKGRTIPRDELDALI------DGADIIIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 +   +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 170 -----LERFSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223

Query: 184 TLALVW 189
            LA++ 
Sbjct: 224 LLAVLK 229


>gi|256818856|ref|YP_003140135.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea
           DSM 7271]
 gi|256580439|gb|ACU91574.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea
           DSM 7271]
          Length = 258

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 79/257 (30%), Gaps = 29/257 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++     +D ET G D+  DR  + + ++V     K    E               A  +
Sbjct: 5   LSKPICFFDLETTGIDITKDRIVEISILKVYPNGNK----ESKTWLVNPTIPIPKAASDV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT ++   +     E +++IH      +  + GYN+ RFD         R   D    
Sbjct: 61  HGITDERVAGEP-TFKELAKQIHNMIKDSD--LAGYNSDRFDIPLLAEEMLRAEVDFDL- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+  +   +   +                         G + ++AH A AD
Sbjct: 117 ---GNRVSVDVQTIFHKMEQRTLS----------------AAYKFYCGKDLIDAHTASAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239
             AT  ++    ++   L   +         +++ D             +F   +     
Sbjct: 158 TNATYEILKAQLDRYDNLENNIKKLSEFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKR 217

Query: 240 IAPVA-WHPRYKDSVIG 255
           +  +    P Y   ++G
Sbjct: 218 VEDIFDEEPGYFGWLLG 234


>gi|330995701|ref|ZP_08319599.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
 gi|329574760|gb|EGG56321.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
          Length = 256

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 74/253 (29%), Gaps = 32/253 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G ++  DR  +   ++V     +    E    +   +      +  I GI  
Sbjct: 10  VFFDLETTGINITNDRIVELCYIKVYPNGNE----ESKSMRINPEMHIPESSSAIHGIYD 65

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          + ++ +            G+N+ RFD       F R   D         
Sbjct: 66  EDVADCP-TFKQVAKDLANTIK--GCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKF- 121

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D+ ++   +   +                         G +  NAH A AD  AT 
Sbjct: 122 ---IDVQNIYHKLERRTLS----------------AAYKFYCGKDLENAHSALADTRATY 162

Query: 186 ALVWLIREKKPKLFEY---LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
            ++    +  P+  +         +K     +     M    +   +F   +     +A 
Sbjct: 163 EVLMAQLDHYPEDLKNDVAFLSDFSKM-TDNVDFAGRMVYDENHDIVFNFGKYKGKKVAD 221

Query: 243 VAW-HPRYKDSVI 254
           V    P Y   ++
Sbjct: 222 VLRTDPGYYSWIL 234


>gi|125624796|ref|YP_001033279.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493604|emb|CAL98589.1| Probable ATP-dependent helicase dinG homolog [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071596|gb|ADJ60996.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 791

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 84/250 (33%), Gaps = 37/250 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D E      + ++  Q     V    + +E+               P    +T
Sbjct: 1   MTRYAVVDLEATDAHSSENKIIQIGIALV-EGGKIVETYSTE---VNPHEPLLPRISELT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ ++        +E +  + +  +     +   +N RFD       F     +     
Sbjct: 57  GLSDKQLKSAP-DFSEVASEVRKLLTDS---VFVAHNARFDYGLLEKSFLNAGLEF---- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             N   R D +D+ R  Y                  + L+ L+    + H + H A +D 
Sbjct: 109 --NEMLRVDTVDLARVFYPTFE-------------KYGLEALSEKLDLAHDHPHAAVSDA 153

Query: 182 YATLALVWLIREKKPKLFEYLYD----------YRNKNQLRKLIDIQNMTPLVHVSGMFG 231
           YAT  L+  I EK  KL   + +          + +K+ L++ +D   + P         
Sbjct: 154 YATAELLIRIEEKIQKLPRSVLEELLRHSDNLLFESKSFLQEQLDKTKIRPAAFKVVHNI 213

Query: 232 ASRSNTALIA 241
           A+R   + ++
Sbjct: 214 ATRKFKSSVS 223


>gi|313206047|ref|YP_004045224.1| exonuclease rnase t and DNA polymerase iii [Riemerella
           anatipestifer DSM 15868]
 gi|312445363|gb|ADQ81718.1| Exonuclease RNase T and DNA polymerase III [Riemerella
           anatipestifer DSM 15868]
          Length = 254

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 28/239 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
               I+D ET G +++ DR  +   ++V+       S E        +      A  + G
Sbjct: 7   KPLCIFDLETTGTNISKDRIVEICILKVNTD----ASRETKTWLVNPEMHIPAFATAVHG 62

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ +          E + +I +  S     + G+N+ RFD         R   D      
Sbjct: 63  ISDEDVKDAP-TLKEIAPKIMEMIS--GADLGGFNSNRFDVPLLAEEMLRAGVD------ 113

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 +DL  +                                      +AH A+AD  
Sbjct: 114 ------FDLSKMKLVDAQV--------IFHKMEPRNLSAAYQFYCNKTLEDAHSAEADTL 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL-VHVSGMFGASRSNTALI 240
           AT  ++     K  +L + +      +  +K  D+            +F   +    L+
Sbjct: 160 ATFEVLDAQVGKYEELPKDINGLSEFSYHQKFADLAGFIAFDDKGQEIFTFGKYKGQLV 218


>gi|296115251|ref|ZP_06833892.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978352|gb|EFG85089.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 226

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 51/191 (26%), Gaps = 30/191 (15%)

Query: 1   MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    + +D ET G D    DR  + A + +            F      +     EA  
Sbjct: 1   MKRSIL-FDTETTGLDPLNGDRVIEIAALELIGDL-PSGR--SFRVLIDPERDVPEEASR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + G T           A+ +     F        +  +N  FD  +    F R       
Sbjct: 57  VHGFTRADLEGQPK-FAQIADEFLAFIGDDE---LIAHNAAFDFGFLNAEFRRAGLPELA 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
            +        D L + RA +   P+               L  L     I+      H+A
Sbjct: 113 MTRM-----VDTLQIARARFPGMPN--------------SLDALCRRFSIDLSARTTHNA 153

Query: 178 KADVYATLALV 188
             D      + 
Sbjct: 154 LLDCKLLAEVY 164


>gi|294673575|ref|YP_003574191.1| DNA polymerase III subunit epsilon [Prevotella ruminicola 23]
 gi|294472509|gb|ADE81898.1| putative DNA polymerase III, epsilon subunit [Prevotella ruminicola
           23]
          Length = 285

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 7/123 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   VI+D ET G D+  DR  Q + ++V     + E           +   +P    +
Sbjct: 5   LTKPLVIFDLETTGLDLVKDRIIQISYIKVYPDGHE-ERGNEL---VNPEKPIEPMITQL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+            +    + + F+       G+N+  FD       F R   D    
Sbjct: 61  TGISNDDVKDKP-TFKQLGAVLAEKFT--GCDFAGFNSNHFDIPLLAEEFLRAGVDFDFS 117

Query: 121 SWD 123
              
Sbjct: 118 KCK 120


>gi|289675841|ref|ZP_06496731.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae FF5]
          Length = 204

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 52/201 (25%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G       R  + A V +  Q   +E  +                  
Sbjct: 1   MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+          E      +  F     +  +  +N  FD  +      R       
Sbjct: 57  LTGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR------- 105

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAK 178
                  S    L + R                 GA + KL  L       +   AH A 
Sbjct: 106 IERTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAM 152

Query: 179 ADVYATLALVWLIREKKPKLF 199
           AD      L   +  +  +  
Sbjct: 153 ADAEMAANLTAYLTNELRQTH 173


>gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1]
 gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit
           family [Aromatoleum aromaticum EbN1]
          Length = 478

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 49/190 (25%), Gaps = 29/190 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   + D   + A + +      +            D         +TGI+
Sbjct: 18  LAFVDIETTGTTASHDSITEIAIIEIGEDG--VREWSSL---VRPDSRIPDYIERMTGIS 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE +  +          +   +N RFD  + R  F R   D        
Sbjct: 73  NHMVADAP-TFAELAETVFDRLHER---VFVAHNARFDHGFIRAAFRRLGVD-------- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R  +L  +R                       L  L   +G+E    H A  D  A 
Sbjct: 121 --FRPKVLCTVRLSRRLY----------PQERRHNLDALIARHGLEVEAQHRALGDAQAL 168

Query: 185 LALVWLIREK 194
                 +  +
Sbjct: 169 WQFWQRVHRQ 178


>gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 864

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 27/206 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N  V++D ET G D   D   + A ++  +    ++    +         P  E+  + 
Sbjct: 497 QNKLVVFDVETTGLDTTKDEIIELAALKAGKDG-VVDEFHEYLRN----SKPVGESFQVH 551

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ Q  L  G    +       F    +  ++G+N                  D     
Sbjct: 552 GISDQVLLEQGKPPEKSLASFTNFIDDCD--LVGHNVNYDITMVENQCKKLLNQDLELHG 609

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +       D +D+ R  +                  + L+ L     I     H A  DV
Sbjct: 610 Y-------DTVDISRRYFPRLE-------------KYNLESLCEDLQISSKPTHRAMDDV 649

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN 207
            AT  L+ ++ EK     E   +Y N
Sbjct: 650 EATFELLQILLEKIKPGIEKRKEYVN 675


>gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain
           Friedlin]
 gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major
           strain Friedlin]
          Length = 1429

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 65/195 (33%), Gaps = 28/195 (14%)

Query: 3   NHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             +  V +D ET G + + D   + A       ++ IE+   F           P  V I
Sbjct: 760 KTYRVVFFDIETTGLNPSTDAIVEVAM------FDPIEN-STFHTLVNPQRPITPRTVGI 812

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFYR 112
             IT         V+   ++ I Q+  +            ++G+N    D+   R     
Sbjct: 813 HHITNAMVRDAPTVDV-VAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALEC 871

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW-----PSRDDGATSFKLQDLALAN 167
           +  +       +G    D L ++ A  +     ++      P  D  A+S +L  L  A 
Sbjct: 872 HAPEC----QLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITAL 927

Query: 168 GI-EHVNAHDAKADV 181
            +    + H A  D 
Sbjct: 928 NVRPEGDLHRADTDT 942


>gi|294789265|ref|ZP_06754503.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Simonsiella muelleri ATCC 29453]
 gi|294482690|gb|EFG30379.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Simonsiella muelleri ATCC 29453]
          Length = 450

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 30/218 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           VI D E  G     DR  + A +R D   + +E                     +TGI+ 
Sbjct: 20  VILDLEATGGHFMHDRITEIAFLRFD--GQNVERFTQL---VNPQKEISEFVTQLTGISN 74

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         A+    I          ++  +N RFD    RN F R             
Sbjct: 75  EMVANAP-TFADVIPHILPMLR---GSLLVAHNSRFDYTLLRNEFRRAGVPFAT------ 124

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
                 L  ++      P+  +            L  +A   G       H A ADV   
Sbjct: 125 ----PTLCTVKLSRTLYPNEHK----------HNLDAVANRFGLTSDGKRHRAWADVAIL 170

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
              +          ++ +     +  +      +N+  
Sbjct: 171 ADFLQAALLDNADRWQKIALSLIQPPVLPTNIPENIHH 208


>gi|254374374|ref|ZP_04989856.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548]
 gi|151572094|gb|EDN37748.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548]
          Length = 238

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 63/209 (30%), Gaps = 24/209 (11%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V        +T  F+C P   Y  +  A+ I G+T
Sbjct: 13  VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNTLHFYCNPN--YEVEAGALAIHGLT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E     ++ +         +  +N  FD  +          + Y     N
Sbjct: 70  NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQN 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D LD+ R  +    +               L  L        +H   H A  D  
Sbjct: 126 VARIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 171

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L        +KN +
Sbjct: 172 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 200


>gi|302384787|ref|YP_003820609.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
 gi|302195415|gb|ADL02986.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
           WM1]
          Length = 235

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 63/203 (31%), Gaps = 28/203 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + ++  D ET G D  LD+  +   V+V  + +  E  + F          +   + +
Sbjct: 1   MESSYIAVDLETTGLDPKLDKIIEIGAVKV-VKGQMTEHFQTF---INPFRKLESRVIIL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ ++              I +F        +  +++ FD  + +             
Sbjct: 57  TGISDRQLEASPG----IGEVIGEFLEFAEGLPVLGHHVIFDYSFLKRAAINEG------ 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            +       D L + R                       L       GIE   +H A AD
Sbjct: 107 -YSFERRGIDTLKLARRF-------------MPPEEKKNLGAACGYFGIEQTMSHRALAD 152

Query: 181 VYATLALVWLIREKKPKLFEYLY 203
             A   L   + ++  K    ++
Sbjct: 153 ASAAHGLYQEMAKRYGKEAPEIF 175


>gi|237817379|ref|ZP_04596371.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
 gi|237788192|gb|EEP62408.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
          Length = 379

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 180

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I +        II  +N  FD  +                  
Sbjct: 181 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 216

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 217 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 270

Query: 184 TLALVW 189
            LA++ 
Sbjct: 271 LLAVLK 276


>gi|41057226|ref|NP_958252.1| hypothetical protein VWBp10 [Streptomyces phage VWB]
 gi|39656049|gb|AAR29700.1| hypothetical protein [Streptomyces phage VWB]
          Length = 263

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 58/217 (26%), Gaps = 17/217 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G DV  DR    A + +       E                  A  + GIT 
Sbjct: 8   VAFDLETTGVDVEQDRIVTAAAIDLGA-----EKPLTLEWLADPGIEIPEGATAVHGITT 62

Query: 66  QKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + A   G    +   ++ +     V +   +  +N+ +D         R      +    
Sbjct: 63  EHAREHGERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYELPLLQ---- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181
                   L V+                 +   + +L  LA       +   AH    D 
Sbjct: 119 -DRLDGTPLHVIDTRVLDQHCLPYRKRVSETQGARQLITLAQVYSLPWDAEAAHGCSYDA 177

Query: 182 YATLALVWLIREKKPK---LFEYLYDYRNKNQLRKLI 215
                + + I          +     +  + +  +L 
Sbjct: 178 LMAARIAYRIGSLAHMPKLEWPQSIRFNRRPRFHELD 214


>gi|54114497|gb|AAV29882.1| NT02FT1179 [synthetic construct]
          Length = 230

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V        +   F+C P   Y  +  A+ I G+T
Sbjct: 5   VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YEVEAGALAIHGLT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E     ++ +         +  +N  FD  +          + Y     N
Sbjct: 62  NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D LD+ R  +    +               L  L        +H   H A  D  
Sbjct: 118 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L        +KN +
Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 192


>gi|227431886|ref|ZP_03913909.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352353|gb|EEJ42556.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 797

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 77/232 (33%), Gaps = 28/232 (12%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           + FV+ D ET G  V    R  Q     + ++ + ++  E F        L D +   +T
Sbjct: 5   DTFVVVDLETTGHSVKKGGRIIQIGMTFI-KKRQIVDHFESF---VNPGQLIDRQIQQLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I+ +        E E +  +          +I  +N+ FD  Y  + F R  +      
Sbjct: 61  HISQKDVQNAPYFE-EIAPLLQNLLQN---TVIIAHNVNFDYPYLNDEFERTGF------ 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               ++  D + + +                  A  ++L DL     I   NAH A AD 
Sbjct: 111 QLLKSAAIDTVQLAQI-------------LFPMAPGYRLLDLTTYLNITLKNAHRANADA 157

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
           +AT  L     +K  +L +       +     L   Q    LVH        
Sbjct: 158 HATALLFLKFWKKLEELPDITLKQLQQGDWPLLRQTQQFLKLVHSKNKQNFG 209


>gi|70732717|ref|YP_262480.1| exonuclease [Pseudomonas fluorescens Pf-5]
 gi|68347016|gb|AAY94622.1| exonuclease [Pseudomonas fluorescens Pf-5]
          Length = 203

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 55/200 (27%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    +  R  + A V +  Q   +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPSSSCRATEIA-VVILEQGRIVERYQSLM---NAGVRVPAFIEQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E +    +++F        +  +N  FD  +      R        
Sbjct: 57  TGISNAMLRSAPPAE-QVMNEVNEFV---GITPLLAHNAAFDQKFWDFELGRI------- 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
                            +  F+   +        A + KL  L    G+ H   AH A A
Sbjct: 106 -------------KRTRLQNFACSLLLARRLMPAAPNHKLGTLTSFAGLPHTGQAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      LV  +  +     
Sbjct: 153 DAEMAANLVAHLAGELRHKH 172


>gi|27383129|ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27356303|dbj|BAC53283.1| blr8018 [Bradyrhizobium japonicum USDA 110]
          Length = 298

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 79/290 (27%), Gaps = 39/290 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G D   D   +   V+ D       +   + F           PE   ITGI
Sbjct: 45  ILLDTETTGLDHRKDEIIELGMVKFDYTPDGRIVGVRDTFAAFDEPSAPIPPEITAITGI 104

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      + +A  S  +       +  I   +N  FD  ++   +             
Sbjct: 105 TDEMVAGQRIDDAAVSAFV------DDAVITIAHNSGFDRKFAERYW------------- 145

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +    A+     +   R+ G    +L  L    G  H  AH A  D +A
Sbjct: 146 ----------PVFEHKAWGCSATEIDWREHGFAGAQLGYLLNGTGFFH-QAHRAVDDCHA 194

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
            L ++  +          L     +    ++   Q    L          R         
Sbjct: 195 LLEVLDFVLPTTGAPALALLLETARRPTLRVWAEQTAFEL----KDSLKRRGYRW---ND 247

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIK 293
               R K   I  N SG       L +    + +  S   L        +
Sbjct: 248 GSDGRPKSWFIDVNESGLDDEIAFLRAEIYMREVEPSVQRLTAFTRFSCR 297


>gi|315103201|gb|EFT75177.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA2]
          Length = 658

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 92  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGSIPASVQVLTGI 146

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                   +F     +  +  +N RFD  + +  + ++ Y        
Sbjct: 147 TDVMVRSAP-SLNAVLPSWSEF---SRSTALVAHNARFDIGFLQRAYAQHDYPW------ 196

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +  +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 197 DDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 245

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 246 TVDVLHGLIDRVGNLGVTTLE 266


>gi|314981011|gb|EFT25105.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA3]
 gi|315093023|gb|EFT64999.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL060PA1]
          Length = 597

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 31  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGSIPASVQVLTGI 85

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                   +F     +  +  +N RFD  + +  + ++ Y        
Sbjct: 86  TDVMVRSAP-SLNAVLPSWSEF---SRSTALVAHNARFDIGFLQRAYAQHDYPW------ 135

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +  +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 136 DDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 184

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 185 TVDVLHGLIDRVGNLGVTTLE 205


>gi|314966430|gb|EFT10529.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA2]
 gi|315091670|gb|EFT63646.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA4]
 gi|327327874|gb|EGE69650.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL103PA1]
          Length = 590

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 24  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGSIPASVQVLTGI 78

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                   +F     +  +  +N RFD  + +  + ++ Y        
Sbjct: 79  TDVMVRSAP-SLNAVLPSWSEF---SRSTALVAHNARFDIGFLQRAYAQHDYPW------ 128

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +  +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 129 DDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 177

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 178 TVDVLHGLIDRVGNLGVTTLE 198


>gi|282854298|ref|ZP_06263635.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139]
 gi|282583751|gb|EFB89131.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139]
          Length = 633

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 67  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGSIPASVQVLTGI 121

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                   +F     +  +  +N RFD  + +  + ++ Y        
Sbjct: 122 TDVMVRSAP-SLNAVLPSWSEF---SRSTALVAHNARFDIGFLQRAYAQHDYPW------ 171

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +  +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 172 DDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 220

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 221 TVDVLHGLIDRVGNLGVTTLE 241


>gi|50842208|ref|YP_055435.1| hypothetical protein PPA0720 [Propionibacterium acnes KPA171202]
 gi|50839810|gb|AAT82477.1| DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Propionibacterium acnes KPA171202]
 gi|314923288|gb|EFS87119.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL001PA1]
 gi|315107037|gb|EFT79013.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA1]
          Length = 633

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V          +   C              +TGI
Sbjct: 67  TFCVVDLETTGTS-EGSQITEIGAVKV-CGGRVEGEFQTLVC---PTGSIPASVQVLTGI 121

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                   +F     +  +  +N RFD  + +  + ++ Y        
Sbjct: 122 TDVMVRSAP-SLNAVLPSWSEF---SRSTALVAHNARFDIGFLQRAYAQHDYPW------ 171

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +  +  D L + R++ A                ++KL  L+         +H A AD  A
Sbjct: 172 DDPAVVDTLALARSVLA-----------RGEVRNYKLSTLSRLFHTTTTPSHRALADARA 220

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + ++   L     +
Sbjct: 221 TVDVLHGLIDRVGNLGVTTLE 241


>gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sicca ATCC 29256]
 gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sicca ATCC 29256]
          Length = 449

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 65/217 (29%), Gaps = 44/217 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A +R +         E +              V +TGIT +
Sbjct: 2   VVDLESTGGNLYQDRVTEIAFLRFEN-----GRVEHYEQLINPGKPIPEFVVQLTGITNE 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
              +      + +  I          +I  +N RFD  + R+ FYR   D          
Sbjct: 57  MVAQAPA-FDQIAPDILPLLR---GSLIVAHNSRFDYTFLRHEFYRAGIDFAA------- 105

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI+  + H A ADV A   
Sbjct: 106 ---PALCTVQLSRRLYPQFYK----------HNLDSIISRMGIQTDDRHRALADVLALAD 152

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
                            ++  K +     D    T +
Sbjct: 153 ---------------YLEHSLKEKTSDEWDNHCRTLM 174


>gi|167628537|ref|YP_001679036.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
 gi|167591277|gb|ABZ83025.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
          Length = 255

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 49/194 (25%), Gaps = 30/194 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW------EKIESTEVFFCKPADDYLPDPEA 57
            FV++D ET G  V  D      GV +          E      VF             A
Sbjct: 61  TFVVFDTETTGLSVPNDDVIALGGVALPPGGEGAEWTEDTGKVRVFDRLVNPHRPIPVLA 120

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             ITGI                  +  F    +  ++  + I FD  +            
Sbjct: 121 REITGIDDDMVFSQPT----IYPVLDDFLDFIDGAVLVAHGIAFDVGFLDK-------YL 169

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                   +   D + + R +  F  +               L  L    GI     H A
Sbjct: 170 RPLRTKLYHPVIDTITLSRVLEPFRAE-------------HSLDALVADYGITPRRRHSA 216

Query: 178 KADVYATLALVWLI 191
             D   T  L   +
Sbjct: 217 LGDAQMTADLFAAM 230


>gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018]
          Length = 301

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 60/193 (31%), Gaps = 32/193 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + + + D ET G     D   +   +RV    E ++  +            D     +TG
Sbjct: 14  DDYCVLDTETTGLSAYYDEIIEIGILRVRNN-EIVDRYDQL---IKPSIEVDGFITALTG 69

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT           +     +  F S     II  +N  FD  +    F     + Y    
Sbjct: 70  ITNDMLEDMP-SISSVKNDVLSFISE---DIILGHNTSFDMRFLNEGFKEQLSNQY---- 121

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    +D M+      P+              +L DL    G+ H N H A AD  
Sbjct: 122 ---------MDTMQFARKLYPELKH----------HRLSDLTDYLGL-HNNEHRALADCI 161

Query: 183 ATLALVWLIREKK 195
           AT  L   ++ + 
Sbjct: 162 ATKELYDAVKSRM 174


>gi|261416372|ref|YP_003250055.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372828|gb|ACX75573.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326099|gb|ADL25300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 188

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 50/175 (28%), Gaps = 28/175 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F + D ET G     +R  +     +D   E +E+               P    +T
Sbjct: 1   MLKFAVVDLETTGGHGEDNRIMEIGIALMDGS-EIVETYHAL---VDPGKPITPFVRELT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +            +  +          I   +N++FD  Y      R         
Sbjct: 57  GITDEMVSGQPQ-FGVIAEHVAALLQDR---IFVAHNVQFDCKYMTAELKRCCI------ 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                +R   + + R ++              G  S+ L  L  + G+   N H 
Sbjct: 107 -KFNPARLCTVKLSRRVF-------------PGQPSYSLHKLTESLGLPDFNHHR 147


>gi|192359256|ref|YP_001982513.1| DNA polymerase III subunit epsilon [Cellvibrio japonicus Ueda107]
 gi|190685421|gb|ACE83099.1| DNA polymerase III, epsilon subunit [Cellvibrio japonicus Ueda107]
          Length = 237

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 54/195 (27%), Gaps = 26/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +   R  +   V +             +     +   D  A  + GI+
Sbjct: 4   IVLDTETTGLEYSQGHRIIEIGCVEL-MNRRLTGRHYHQY--INPEREVDAGAFAVHGIS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V    F+R +  F +      +  +N  FD  +  +    N       S   
Sbjct: 61  NAMLNDKPV----FARIVDDFLNFVGDAELIIHNAAFDIGFIDHEL--NMLRPGFGSIKG 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +    +               L  L    G+++     H A  D  
Sbjct: 115 RCGVIDTLLLARNKHPGQKN--------------NLDALCKRYGVDNSQRDLHGALLDAE 160

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 161 ILADVYLAMTGGQTS 175


>gi|326801307|ref|YP_004319126.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21]
 gi|326552071|gb|ADZ80456.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21]
          Length = 1493

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 71/205 (34%), Gaps = 30/205 (14%)

Query: 5   FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     D P           Q A    D     I   + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPKRWDAPITDTDNWPRCVQIAWQLHDDMGRLI-EHQDYLVKPDGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  + GI+ + AL  G+   E   + +          I   NI FD       F+R  
Sbjct: 61  -DAERVHGISTELALEQGIDLVEVLEKFNIALDKAK--FIVGQNIGFDINIMGCEFHRMG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL----ALANGIE 170
                       +      V+      + + +Q P    G   FKL +L    A   G+ 
Sbjct: 118 I----------ATTMGEKAVLDTCTEVTANLLQLPGGRGGK--FKLPNLTELHAYLFGVP 165

Query: 171 HVNAHDAKADVYATLALVWLIREKK 195
              AH+A ADV AT      + +K 
Sbjct: 166 FAEAHNATADVEATTRCFLELIKKN 190


>gi|163847184|ref|YP_001635228.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525025|ref|YP_002569496.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
 gi|163668473|gb|ABY34839.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448904|gb|ACM53170.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
          Length = 951

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 34/198 (17%)

Query: 2   TNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
            N+  +V  D ET G    LD   + A V   R  E ++  E              +   
Sbjct: 1   MNNRIYVAIDVETTGLQSGLDEIIEVAAV-TFRGHEILDRFEQL---VRPRQAVPLKITR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI P    +      E    + +F    N  I+G++               N      
Sbjct: 57  LTGIDPAALAQAPR-FNEIGADLARFI--GNRPIVGHSIGFDLTMLRAQGMQFN------ 107

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                    +D  ++                     +S+KL  LA   GI H +AH A  
Sbjct: 108 ------QPVYDTFELA-------------TLLLPQVSSYKLSALAAHLGIPHPDAHRALN 148

Query: 180 DVYATLALVWLIREKKPK 197
           D   T  L  ++ E+  +
Sbjct: 149 DAEVTARLFAMLSERMLQ 166


>gi|315268227|gb|ADT95080.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS678]
          Length = 201

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 53/187 (28%), Gaps = 22/187 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           VI D ET G +       + + +        +                  EA  I GIT 
Sbjct: 33  VILDTETTGLE-WGCEVVEISIIEARTGLILM---NTLVRPINP---IPAEATAIHGITN 85

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +      +   + +  + Q  S     +I YN+         +  Y +    Y  S    
Sbjct: 86  EMVADAPL-FFDIAISVAQILS--GRTVIAYNSAFDKKMLCSSAAYSSGEPPYVNS---- 138

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYAT 184
               D    M A   +  D   W           L + A   GI     AH A  D   T
Sbjct: 139 ----DFQCAMLAYAQYKGD---WNHGHGDFKWHSLVNAAKQQGIALEGTAHRALYDCQLT 191

Query: 185 LALVWLI 191
             L+  +
Sbjct: 192 RELILKM 198


>gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1]
          Length = 597

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V R        +   C              +TGI
Sbjct: 31  TFCVVDLETTGTG-EGAQITEIGAVKV-RGGRVEGEFQTLVC---PTGPIPASVQVLTGI 85

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           +       +F     + ++  +N RFD  + +  + ++ Y        
Sbjct: 86  TDAMVRPAP-PLSAVLPSWSEF---SRSTVLVAHNARFDIGFLKRAYAQHNYPW------ 135

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++                  ++KL  L+       +++H A AD  A
Sbjct: 136 GDPTLVDTLALARSV-----------LSRGEVRNYKLSTLSQLFRTTTMSSHRALADARA 184

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+         +
Sbjct: 185 TVDVLHGLIERVGSFGVTTLE 205


>gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2]
 gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3]
 gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium sp. P08]
          Length = 598

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 26/201 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      +  +   V+V R        +   C              +TGI
Sbjct: 32  TFCVVDLETTGTG-EGAQITEIGAVKV-RGGRVEGEFQTLVC---PTGPIPASVQVLTGI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           +       +F     + ++  +N RFD  + +  + ++ Y        
Sbjct: 87  TDAMVRPAP-PLSAVLPSWSEF---SRSTVLVAHNARFDIGFLKRAYAQHNYPW------ 136

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L + R++                  ++KL  L+       +++H A AD  A
Sbjct: 137 GDPTLVDTLALARSV-----------LSRGEVRNYKLSTLSQLFRTTTMSSHRALADARA 185

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ ++  + E+         +
Sbjct: 186 TVDVLHGLIERVGSFGVTTLE 206


>gi|295092491|emb|CBK78598.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium cf. saccharolyticum K10]
 gi|295115331|emb|CBL36178.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SM4/1]
          Length = 251

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 53/202 (26%), Gaps = 28/202 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +   D ET G D   D+  +     V  Q +                        +TG
Sbjct: 16  DSYAAIDLETTGLDPKRDKIIEVGACLV-EQGKVKRELSFL---INPHREISERVELLTG 71

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       +E E    I  F        +  +++ FD  + ++          +   
Sbjct: 72  ITGRMVEHAPGIE-EVIGEIAAFV---GELPLLGHHVIFDYSFLKHAAVNAGLPFEKNG- 126

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + R                       L        I    AH A +D  
Sbjct: 127 ------IDTLSLCRRF-------------MPPEEKKNLSAACGWFQIPRETAHRALSDAK 167

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           A   L   +R+   +  E  + 
Sbjct: 168 AAHLLYQSLRDCHFQENEEAFA 189


>gi|27365569|ref|NP_761097.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|37680285|ref|NP_934894.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|320155964|ref|YP_004188343.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27361717|gb|AAO10624.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6]
 gi|37199032|dbj|BAC94865.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|319931276|gb|ADV86140.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 238

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 12/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D+ET G +           V  D    +I   +  +     +     E+V I GIT
Sbjct: 48  LVALDFETTGLNPNQHDILSIGLVPFD--LHRIRLQQARYWTVKPEDQLHEESVVIHGIT 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             K  R      +    + +        ++  +    +  +  +   +   +        
Sbjct: 106 HSKVQRAP----DLIDVLDEVLDCLAGKVVVVHYQHIERPFFDSALRKRINEGIE----- 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++          G     +     S +L       G+   +AH A  D  AT
Sbjct: 157 -FPLIDTMEIESQWAKQQFGGWLNRLKGKSLPSVRLAQSRRRYGLPDYSAHHALTDAIAT 215

Query: 185 LALVWLIREKK 195
             L        
Sbjct: 216 AELFQAQIAHH 226


>gi|187924850|ref|YP_001896492.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716044|gb|ACD17268.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 244

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 57/205 (27%), Gaps = 27/205 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+     +   DP A+ + G+T
Sbjct: 4   LILDTETTGLNARTGDRILELGCVEM-VNRRLTGNNLHFY--INPERESDPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE + +   F    +  I   +N  FD  +    F              
Sbjct: 61  TEFLSDKPK-FAEIADQFRDFIQDADLII---HNAPFDIGFLDAEFALLGLPP------- 109

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                     ++       D +    +        L  L    GI   H   H A  D  
Sbjct: 110 ----------VKTYCGEIIDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207
               +   +   +  L   +    +
Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGESH 184


>gi|91223500|ref|ZP_01258765.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|254228411|ref|ZP_04921837.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
 gi|262393546|ref|YP_003285400.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|269966277|ref|ZP_06180366.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
 gi|91191586|gb|EAS77850.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|151938999|gb|EDN57831.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
 gi|262337140|gb|ACY50935.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|269829192|gb|EEZ83437.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
          Length = 240

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 73/253 (28%), Gaps = 32/253 (12%)

Query: 3   NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           N  V+ D ET G +          R  +   V +    +       F      D    PE
Sbjct: 10  NRIVVLDTETTGMNREGGPHYMGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQPE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           AV + GIT +  +       E++    +F        +  +N  FD  +    F     D
Sbjct: 67  AVEVHGITDEFLVDKP----EYASVHQEFLEFIKGAELVAHNAPFDTGFMDYEFG--MLD 120

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                 D+     D L + + I+                    L  L    GI+  H   
Sbjct: 121 PNIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDILCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG-MFGAS 233
           H A  D      +   +   +  L           +  + I+ +    ++  S     A 
Sbjct: 167 HGALLDAEILADVYLFMTGGQTSLEFNANKQEGGVETIRRIEGRKALKVLRASADELEAH 226

Query: 234 RSNTALIAPVAWH 246
           +    L+    WH
Sbjct: 227 QKRLELVNDCIWH 239


>gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
 gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
          Length = 616

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 62/201 (30%), Gaps = 27/201 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + ++D ET G      D       VR+     + E    F            ++V + GI
Sbjct: 422 YTVFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEE--TFDQLVNPRRPISLDSVRVHGI 479

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P        +E E   R ++F    +T ++G+N      +  +                
Sbjct: 480 QPVLLQDKPPIE-EVLPRFYRF--ARDTVLVGHNVAFDLKFIRQKEKALGLRFDQ----- 531

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  +LD M       P+             + L +LA A GIE V  H A  D   
Sbjct: 532 ------PVLDTMLLAAVVDPERQH----------YGLDELAAAFGIEPVGRHSALGDALI 575

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+  +     +   +   
Sbjct: 576 TAELLLRLLPLLEQRGIHTLR 596


>gi|28210814|ref|NP_781758.1| DNA polymerase III subunit epsilon [Clostridium tetani E88]
 gi|28203252|gb|AAO35695.1| DNA polymerase III alpha subunit [Clostridium tetani E88]
          Length = 380

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 82/299 (27%), Gaps = 34/299 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV+ D ET G     D+  +   ++  +  + +E                  A  I  
Sbjct: 82  DEFVVIDLETTGLYPVTDKIIEITAIKY-KSGQIVEKYNTL---INPKINIPKRATEINN 137

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT        V+E +    + +F        +  +N  FD  +          +      
Sbjct: 138 ITNNMVKDSPVIE-DVLPELLKFIKE---YPLVAHNASFDIKFLNANLALINREI----- 188

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D L + RA+Y F               + KL  +     I   N+H A  D  
Sbjct: 189 --KNVAIDTLQLSRAMYTFL-------------PNHKLTTIKEHLCISEDNSHRALPDCI 233

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN------KNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
            T  +      K     +   +         K+ L K         L H       +   
Sbjct: 234 TTAEIYLDYCYKANNNLKEFNELEKACFKVIKDMLNKNNRDTEFLKLKHTGNYTDIAYFY 293

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
             +   V    +Y  + I      +    +   S     R+    +E        I ++
Sbjct: 294 PLVRIKVGDRKQYFLTNIPLEELKEHETEKPSKSENFKSRIHLKSEEDLKPFEEYIIQI 352


>gi|254495210|ref|ZP_05108134.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
 gi|85819562|gb|EAQ40719.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
          Length = 1445

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 70/198 (35%), Gaps = 30/198 (15%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G   + +          R  Q A    D     I     F  +P    +P 
Sbjct: 2   YLIFDTETTGLPKSWNAPITDTDNWPRCIQIAWQLHDEMGRVI-EHNDFLIQPEGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A ++G+   E     ++      T  +   N+ FD       F+R  
Sbjct: 61  -DAERIHGISTELAQQEGITLEEGLALFNEVLQK--TKFVVGQNVEFDLNIMGCEFHRLA 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            ++            + L V+      +    Q P    G   FKL  L        GI+
Sbjct: 118 TETN----------LNQLPVLDTCTEKTALLCQIPGGRGGK--FKLPTLTELHKHLFGID 165

Query: 171 HVNAHDAKADVYATLALV 188
              AH+A ADV AT    
Sbjct: 166 FAEAHNATADVEATTRCF 183


>gi|302342239|ref|YP_003806768.1| DNA polymerase III, subunit epsilon [Desulfarculus baarsii DSM
           2075]
 gi|301638852|gb|ADK84174.1| DNA polymerase III, epsilon subunit [Desulfarculus baarsii DSM
           2075]
          Length = 240

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 61/194 (31%), Gaps = 16/194 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G D+A D       VR+      +         P  +      ++ I G+
Sbjct: 46  SFVVLDLETTGVDLARDGVVSAGAVRLRGGRVLLGQYFDEMILPQGEVPAS--SITIHGL 103

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ+    G   A+    +  F       I+  +N  FD ++       +   + +    
Sbjct: 104 TPQRLA-AGRPLAQVFDDLAGFI---GADIVVAHNAGFDLHFIDRHMRAHHGLALQNL-- 157

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L  +R   A       +          +L  +A   G++    H A  D   
Sbjct: 158 -------ALCTLRLCRALLLPSDPF-GVGRHKGQCRLDAIAERFGLDTPQRHTAIGDALV 209

Query: 184 TLALVWLIREKKPK 197
           T  +   +     +
Sbjct: 210 TALIFQRMLAMMEE 223


>gi|300112990|ref|YP_003759565.1| DNA polymerase III subunit epsilon [Nitrosococcus watsonii C-113]
 gi|299538927|gb|ADJ27244.1| DNA polymerase III, epsilon subunit [Nitrosococcus watsonii C-113]
          Length = 243

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 56/194 (28%), Gaps = 28/194 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST-EVFFCKPADDYLPDPEAVFITGI 63
           +I D ET G +     R  +  GV    +      T + F C    +   D  A+ + G+
Sbjct: 4   IILDTETTGLEPKEGHRIIEIGGV----ELNCRRRTGQTFHCYLNPEREVDEGALKVHGL 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +          E +     F        +  +N  FD  +  +  Y     S      
Sbjct: 60  SNEFLSDKPR-FIEIAEEFLAFIKGAE---LVIHNAPFDVGFLDHELY--LLGSNWGKVS 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADV 181
                 D L + R  +    +               L  L    GI++   + H A  D 
Sbjct: 114 VNCQVLDTLQLARQRHPGQKN--------------NLDALCKRYGIDNSRRDLHGALLDA 159

Query: 182 YATLALVWLIREKK 195
                +   +   +
Sbjct: 160 EILAGVYLAMTGGQ 173


>gi|66047527|ref|YP_237368.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258234|gb|AAY39330.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae B728a]
          Length = 204

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 52/201 (25%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G       R  + A V +  Q   +E  +                  
Sbjct: 1   MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+          E      +  F     +  +  +N  FD  +      R       
Sbjct: 57  LTGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR------- 105

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAK 178
                  S    L + R                 GA + KL  L       +   AH A 
Sbjct: 106 IQRTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAM 152

Query: 179 ADVYATLALVWLIREKKPKLF 199
           AD      L   +  +  +  
Sbjct: 153 ADAEMAANLTAHLTNELRQTH 173


>gi|294083688|ref|YP_003550445.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663260|gb|ADE38361.1| DNA polymerase III, epsilon subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 730

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 51/188 (27%), Gaps = 27/188 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVD----RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            D ET G     DR  Q   + VD        + +  E+              +  + GI
Sbjct: 36  LDLETTGLKPQTDRIVQIGAIGVDVAVAADRAEDDHIEML---VDPGIAVPAASTAVHGI 92

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                       A     +  F +     I+GYN   FD  +  N   R   +   W W 
Sbjct: 93  NDAMLADA-KPIAVALPALRSFINK--RIILGYNIG-FDLAFLTNEAKRQGLE---WKWS 145

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  L  V+    A                   L  LA   G+  +  H A  D   
Sbjct: 146 GALCLRQLATVLLGPEAMLMIAD-------------LDALAAHYGVPVIGRHTALGDATI 192

Query: 184 TLALVWLI 191
           T  +   +
Sbjct: 193 TAQVYHKM 200


>gi|226227286|ref|YP_002761392.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27]
 gi|226090477|dbj|BAH38922.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27]
          Length = 214

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 51/194 (26%), Gaps = 28/194 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G   A  DR  + A V+V  Q  ++            +    P    +T I
Sbjct: 6   FAVVDVETTGTRAAGGDRITEIAIVQV--QGGQVGEVYSQLV--NPERPIPPYITSLTHI 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E +  +          I   +N  FD  +      R           
Sbjct: 62  TWDMVRDQP-TFREITSNVLDRLR---GSIFVAHNAPFDWRFVSEEVRRG---------S 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L  +R   A               +   L  +    GIE    H A  D  A
Sbjct: 109 GQELSGPRLCTVRFARA----------ALPQLSRRSLDHVTRYFGIEIAARHRAAGDALA 158

Query: 184 TLALVWLIREKKPK 197
           T   +  +     +
Sbjct: 159 TAHALCRMLNIASE 172


>gi|237807686|ref|YP_002892126.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187]
 gi|237499947|gb|ACQ92540.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187]
          Length = 249

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 65/231 (28%), Gaps = 38/231 (16%)

Query: 2   TNHFVIYDYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYL 52
           TN +VI D ET G +          R  +   V      E I        +      D L
Sbjct: 6   TNRYVILDTETTGMNQSGGPVYIGHRIIEIGCV------EVINRRLTGNHYHVYIKPDRL 59

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
            D EA+ + GIT           A  ++    F        +  +N  FD  +  + F +
Sbjct: 60  VDEEAIRVHGITDAFLADKP-PFAAIAQEFRDFIRGAE---LVIHNASFDVGFIDHEFNK 115

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-- 170
                +     +     D L + R  +                    L  L    GI+  
Sbjct: 116 LG---WTERVKDICRVTDSLALARGQFPG--------------KRNSLDALCTRFGIDNS 158

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           H   H A  D      +  L+   + +L  +     N +          M 
Sbjct: 159 HRTLHGALLDAEILADVYLLMTGGQTRLELHNTVNDNNSASSASAQQLKMI 209


>gi|304392717|ref|ZP_07374657.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130]
 gi|303295347|gb|EFL89707.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130]
          Length = 249

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 28/199 (14%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I+D ET G      DR  +   V + +       T   +  P  D    P+A+ + GIT
Sbjct: 4   IIFDTETTGLSAKDGDRVIEIGAVEM-KDLIPTGRTFHQYIHP-GDREIHPDALRVHGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +     E   +   F       ++  +N  FD  +    + R           +
Sbjct: 62  MERLADEPR--FEAVGQ--SFIDFCGDAMLVAHNAPFDIGFLNAEYARMNLPP-----CD 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D +   R  +  +                 L  L     I   N   H A  D  
Sbjct: 113 PELVLDTVQAARKKFPGA--------------RVSLDMLCDRFNISRANRVLHGALLDAR 158

Query: 183 ATLALVWLIREKKPKLFEY 201
               +   +         +
Sbjct: 159 LLAEVFIELMGGAQVKMGF 177


>gi|253577523|ref|ZP_04854836.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843063|gb|EES71098.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 951

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D+ET G + + D   Q     ++        ++V+           P    +TGI
Sbjct: 2   KYAVLDFETTG-NQSSDDIIQVGLAIIEPDRSI---SQVYRSFVKPGVPIPPFITGLTGI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          E    + +   + N  ++  +N+ FD  Y ++   +  Y  +     
Sbjct: 58  TDEDVKDAP----ELDEVMMEMVPLLNDVVLVGHNVAFDFNYLQSALDKTGYLPF----- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +D ++                   TS++L  +A    +EH   H A +D  A
Sbjct: 109 -TGRILDTMDFLKI-------------LFPSLTSYQLGMVAAEFEVEHERPHQADSDALA 154

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  +     E+  +L      
Sbjct: 155 TALIFLKCLEECDRLPLLTLQ 175


>gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
 gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
          Length = 307

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 60/193 (31%), Gaps = 32/193 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + + + D ET G     D   +   +RV    E ++  +            D     +TG
Sbjct: 20  DDYCVLDTETTGLSAYYDEIIEIGILRVRNN-EIVDRYDQL---IKPSIEVDGFITALTG 75

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT           +     +  F S     II  +N  FD  +    F     + Y    
Sbjct: 76  ITNDMLEDMP-SISSVKNDVLSFISE---DIILGHNTSFDMRFLNEGFKEQLSNQY---- 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    +D M+      P+              +L DL    G+ H N H A AD  
Sbjct: 128 ---------MDTMQFARKLYPELKH----------HRLSDLTDYLGL-HNNEHRALADCI 167

Query: 183 ATLALVWLIREKK 195
           AT  L   ++ + 
Sbjct: 168 ATKELYDAVKSRM 180


>gi|325854302|ref|ZP_08171501.1| exonuclease [Prevotella denticola CRIS 18C-A]
 gi|325484096|gb|EGC87030.1| exonuclease [Prevotella denticola CRIS 18C-A]
          Length = 284

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 7/159 (4%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   V++D ET G D+  DR  Q + ++V    ++ E   +F      +     E   +
Sbjct: 5   LTKPLVVFDLETTGLDLVNDRIIQISFIKVLPDGKE-ERENIF---INPEKPIPTEVTQL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ +          + ++ +   F+       G+N+ RFD       F R   D    
Sbjct: 61  TGISDKDVADAP-TFRQKAKELADRFT--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDFS 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                +++     + R   A +         ++   + K
Sbjct: 118 KSRLIDAQNIYHKMERRNLAAAYKFYCGRKMEEDFEAHK 156


>gi|283796625|ref|ZP_06345778.1| DNA polymerase III PolC-type [Clostridium sp. M62/1]
 gi|291076048|gb|EFE13412.1| DNA polymerase III PolC-type [Clostridium sp. M62/1]
          Length = 251

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 28/202 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +   D ET G D   D+  +     V  Q +                        +TG
Sbjct: 16  DSYAAIDLETTGLDPKRDKIIEVGACLV-EQGKVKRELSFL---INPHREISERVELLTG 71

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       +E E    I  F        +  +++ FD  + ++          +   
Sbjct: 72  ITGRMVEHAPGIE-EVIGEIAAFV---GELPLLGHHVIFDYSFLKHAAVNAGLPFEKNG- 126

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + R                       L        I    AH A AD  
Sbjct: 127 ------IDTLSLCRRF-------------MPPEEKKNLSAACGWFQIPRETAHRALADAK 167

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           A   L   +R+   +  E  + 
Sbjct: 168 AAHLLYQSLRDCHFQENEEAFA 189


>gi|271501671|ref|YP_003334697.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech586]
 gi|270345226|gb|ACZ77991.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech586]
          Length = 244

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 61/224 (27%), Gaps = 30/224 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-VNRRLTGRH--FHVYLRPDRLIDPEAYNV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         AE +     F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGISDEFLADKP-TYAEVADDFIDFIRGAE---LVIHNASFDIGFMDYEFRLLGRDIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCTITDSLLMARRLFPG--------------KRNNLDALCDRYQIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
            D      +   +   +  L   +     +  ++     +   P
Sbjct: 166 LDAEILAEVYLAMTGGQTSLAFSMEGESQQQTVQAETIQRISRP 209


>gi|315925789|ref|ZP_07921996.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620898|gb|EFV00872.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 158

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G D A +R  +   V+VD   + + + E          LP  +    TGIT
Sbjct: 48  YVVIDLETDGLDAAKNRIIEIGAVKVD--GQTVSTFEQLIV--HPHRLP-KKITDPTGIT 102

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
                  G  EAE  +    F    +  +I Y+   FD  +     +R   +    
Sbjct: 103 DTLLADGGRPEAEAIKAFLAFIGSDD--LIRYHV-DFDVQFINQTLHRMDIEPLIR 155


>gi|163784927|ref|ZP_02179686.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879804|gb|EDP73549.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 206

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 26/195 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FVI D ET G   + +   + A ++  +    I+       KP ++++P  + + +TGI
Sbjct: 11  TFVIIDLETTGLSASNNSVIEVAAIKY-QSGMIIDQLHHLT-KPRENFIPS-KVINLTGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +     E +    ++ F       I+  +N +FD  +                  
Sbjct: 68  TNAMVIDKPYFE-DIYPEVYNFLKDS---IVVAHNAKFDISFLSE--------------- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               +    + +R  Y  + +  +    +    S  L  L    GI     H A +D  A
Sbjct: 109 --VHKIVFKNNLRLHYICTDNLARRIFPEIQKKS--LSSLTNYLGINFKQKHRALSDAQA 164

Query: 184 TLALVWLIREKKPKL 198
           TL     + E     
Sbjct: 165 TLQAFQTMLEYLQDY 179


>gi|296536098|ref|ZP_06898231.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
           49957]
 gi|296263574|gb|EFH10066.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
           49957]
          Length = 241

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 57/195 (29%), Gaps = 29/195 (14%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  + A V +            F      +     EA  + G T
Sbjct: 5   LVLDTETTGFDPLTGDRVLEVAAVEI-VNLVPTGRH--FHMLIDPERDVPEEATKVHGFT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +      AE +  +  F        I  +N  FD  +      +            
Sbjct: 62  REMLIGKPK-FAEIAPAMLDFL---GDDPIIAHNAPFDFGFLDWELKKAG---------- 107

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                  LD  R +   +    ++P          L  L    GI++    AH+A  DV 
Sbjct: 108 ----HKALDRARMVDTLALAKKRFPGLP-----NSLDALCRRYGIDNSMRTAHNALLDVQ 158

Query: 183 ATLALVWLIREKKPK 197
               +   +   K  
Sbjct: 159 LLAQVYLELMGGKQP 173


>gi|90420992|ref|ZP_01228896.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334770|gb|EAS48546.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 239

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 27/185 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G D  ++R  +  GV +             F +PA     DP A  + GI+ 
Sbjct: 4   IVFDTETTGLDPDVERVIEIGGVELW-NHIPTGKNYHAFIRPA-GRKVDPAAFDVHGISD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  +  +E +    +FFS      +  +N  FD  +      R           + 
Sbjct: 62  DFLADKPL-FSEIADEFLEFFSGAK---LIAHNAAFDVRFLNAELKRIDQPPI-----DP 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVYA 183
           +   D L + R  +  +P                L  L     ++    + H A  D   
Sbjct: 113 SVVIDTLPMARRKFPMAPAT--------------LDALCSRFSVDTSRRDKHGALLDSEL 158

Query: 184 TLALV 188
              + 
Sbjct: 159 LAEVY 163


>gi|167587486|ref|ZP_02379874.1| DNA polymerase III subunit epsilon [Burkholderia ubonensis Bu]
          Length = 242

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARAGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE   +I  F       I   +N  FD  +    F R     +      
Sbjct: 61  TEFLSDKPK-FAEVVDQIRDFVKGAELII---HNAPFDLGFLDAEFARLDLPPFTEHCAG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQDSLVIDML 180


>gi|297584389|ref|YP_003700169.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           selenitireducens MLS10]
 gi|297142846|gb|ADH99603.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           selenitireducens MLS10]
          Length = 935

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 75/247 (30%), Gaps = 29/247 (11%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            N +VI D ET G      DR  Q A  +V    E ++    +      D         +
Sbjct: 1   MNRYVILDLETTGVAYDKGDRIIQIA-YQVLEDQEVLKRFSTY---INYDKPVPAFIQSL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ +      + E E +  I              +N+ FD  +         Y     
Sbjct: 57  TGISGEHLKNAPLFE-EVAPEILSDLEE---AYFVAHNVEFDLKFLNESLEDAGY----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +++ R                    S++L DLA      H   H A +D
Sbjct: 108 -ASFQGPVIDTVELARIC-------------LPSEDSYRLSDLAKTVQATHTAPHQADSD 153

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFGASRSNTAL 239
           V AT AL   + +K   L     D+        K    + +      +  FG  R     
Sbjct: 154 VEATRALFNELFDKISGLPSETLDHLISLSPHFKSDITEILRECRQHTVAFGFDRYRGMA 213

Query: 240 IAPVAWH 246
           I  V  H
Sbjct: 214 IKSVHPH 220


>gi|116512711|ref|YP_811618.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108365|gb|ABJ73505.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
          Length = 791

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 84/250 (33%), Gaps = 37/250 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D E      + ++  Q     V    + +E+               P    +T
Sbjct: 1   MTRYAVVDLEATDAHSSENKIIQIGIALV-EGGKIVETYSTE---VNPHEPLLPRISELT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ ++        +E +  + +  +     +   +N RFD       F     +     
Sbjct: 57  GLSDKQLKSAP-DFSEVASEVRKLLTDS---VFVAHNARFDYGLLEKSFLNAGLEF---- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             N   R D +D+ R  Y                  + L+ L+    + H + H A +D 
Sbjct: 109 --NEMLRVDTVDLARVFYPTFE-------------KYGLEALSEKLDLAHDHPHAAVSDA 153

Query: 182 YATLALVWLIREKKPKLFEYLYD----------YRNKNQLRKLIDIQNMTPLVHVSGMFG 231
           YAT  L+  I EK  KL   + +          + +K+ L++ +D   + P         
Sbjct: 154 YATAELLIRIEEKIQKLPRSVLEELLRHSDNLLFESKSFLQEQLDKTKIRPAAFKVVHNI 213

Query: 232 ASRSNTALIA 241
           A+R   + ++
Sbjct: 214 ATRKFKSSVS 223


>gi|254429095|ref|ZP_05042802.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
 gi|196195264|gb|EDX90223.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
          Length = 246

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 53/195 (27%), Gaps = 26/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G +     R  +   V +                   +   D  A+ + GI+
Sbjct: 4   VVLDTETTGLEPNDGHRVIEIGCVEM-ENRRLTG--NNLHLYLNPEREIDAGALAVHGIS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +           F + + +F +  +   +  +N  FD  +  +   R            
Sbjct: 61  TEFLADKPT----FDKVVDEFLAFVDGAELVIHNAPFDVGFLNHELRRLGARYGTIEQR- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L + R  +    +               L  L     +E  H   H A  D  
Sbjct: 116 -CGVLDTLVMARQKHPGQKN--------------NLDALCRRYFVENGHRELHGALLDAE 160

Query: 183 ATLALVWLIREKKPK 197
               +   +   + +
Sbjct: 161 ILADVYLAMTGGQTR 175


>gi|88802420|ref|ZP_01117947.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P]
 gi|88781278|gb|EAR12456.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P]
          Length = 275

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 86/300 (28%), Gaps = 33/300 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++   V +D ET G ++A DR  + A ++V     K    E        +      ++ +
Sbjct: 5   LSKPIVFFDLETTGVNIATDRIVEIAVLKVFPNGNK----ESKTWLVNPEMEIPQASIDV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +K   +       ++ + +  +     + G+N+ RFD         R   D    
Sbjct: 61  HGITNEKVASEP-TFKMLAQEVSKLMA--GCDLAGFNSNRFDIPLLAEELMRAGIDFD-- 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
               G    D+  +       +                         G E   AH A AD
Sbjct: 116 --MKGRKAIDVQVIFHKKEQRTLGAG----------------YKFYCGKELEGAHGAAAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239
             AT  ++    +    L   +      +      D      +       F   +     
Sbjct: 158 TNATYEILKAQLDTYADLENSVAALSEFSTHGVRADFAGFILMNDAQQEIFSFGKHKGRT 217

Query: 240 IAPVA-WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
           +  V   +P Y + +   +     +         + +R+      +     +   +   N
Sbjct: 218 VEEVFNENPGYHNWIQNADFPLYTKKVL----KGIKERMTAPKATMSDSEKLQALQQKFN 273


>gi|330961648|gb|EGH61908.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 203

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 50/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +  Q   +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPNHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +  F        +  +N  FD  +      R        
Sbjct: 57  TGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                          +   +F+   +       GA + KL  L     +     AH A A
Sbjct: 108 ---------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +  +     
Sbjct: 153 DAEMAANLTAYLTNELRNTH 172


>gi|258406595|ref|YP_003199337.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium
           retbaense DSM 5692]
 gi|257798822|gb|ACV69759.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium
           retbaense DSM 5692]
          Length = 233

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 30/204 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEA----- 57
            F + D E  G             VR++    + ++      C         P+A     
Sbjct: 35  SFCVLDTELTGLR-RRHEIISIGAVRIEHLALKPLDRFYTEVC---------PKAWTKTG 84

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             I  I+PQ+            + + +  +   T ++  +NI  D  + +    ++    
Sbjct: 85  TLIHRISPQQCQDAPK----IGKVLPELIAYLGTSLLIGHNIALDLQFLQKACKKHLGHP 140

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHD 176
                         +D +R    +     +          S++LQ+LA A G+    AH+
Sbjct: 141 L---------VHPCIDTLRLARVYEESRWESYYDRFTLRVSYQLQELAQAYGLPCFPAHN 191

Query: 177 AKADVYATLALVWLIREKKPKLFE 200
           A +D   T  L   +  K  +   
Sbjct: 192 AASDALQTAYLFVYLVHKLRETHP 215


>gi|118161395|gb|ABK64077.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
          Length = 238

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V ++    ++ +   F      +   +  A+ + G+T
Sbjct: 4   IVLDTETTGLNPRTGDRILEIGAVELN---NRMLTGNNFHHYINPERDSEEGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE +     F +     I   +N  FD  +    F R            
Sbjct: 61  TEFLSDKPK-FAEIAEEFRAFIAGAELII---HNAPFDIGFLNAEFKRLNLPPVHEQV-- 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
            +   D L   + ++                    L  L    G+   H   H A  D  
Sbjct: 115 -HGVIDTLVQAKEMHPG--------------KRNSLDALCDRYGVSNAHRKLHGALLDSE 159

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 160 LLADVYLAMTRGQNS 174


>gi|189500655|ref|YP_001960125.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
           phaeobacteroides BS1]
 gi|189496096|gb|ACE04644.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
           phaeobacteroides BS1]
          Length = 185

 Score = 86.8 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 67/195 (34%), Gaps = 21/195 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+   +  D ET G + A     Q   +        I       C P      D  A+ I
Sbjct: 1   MSKKVLYIDVETTGTNPAKHGIIQIGAIM--EVSGIIAEELNLKCAPHSGADIDDHALTI 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYRN 113
           TG + ++     +   E   +  QF +         + C     N+ FD  + +  F  +
Sbjct: 59  TGTSREELTHR-MSSKEALLQFKQFLNRYVEQYDREDKCYPAGYNVHFDLDFIQQWFKMH 117

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D Y         R D L V+          ++  +       +KL+ +    GI    
Sbjct: 118 G-DKYGIGSYVNWRRLDPLPVLF---------MKDFTGALHLPDYKLETVCRHYGIRLE- 166

Query: 174 AHDAKADVYATLALV 188
           AHDA +D+ AT  L+
Sbjct: 167 AHDAFSDIRATRELL 181


>gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1443

 Score = 86.8 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 69/493 (13%), Positives = 155/493 (31%), Gaps = 62/493 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   +F G  + +    I+S ++F                +T I
Sbjct: 395 TYCVFDLETTGLSSRFDHIIEFGGQ-IMKDRTCIKSLQLF---VKPPIALSAFTTELTNI 450

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +         AE    I +F       I+  +N  FD  +      R           
Sbjct: 451 SEENMKNA-KPFAECVDEILEFI---GDSILVAHNASFDYGFLNAELERIGRKPL----- 501

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D LD+ R++                   ++L +LA   GI +    AH A  D 
Sbjct: 502 -MNPVIDTLDLARSMM--------------DRKGYRLGNLARQYGIRYDEDVAHRADYDA 546

Query: 182 YATLALVWLI-----------REKKPKLFEYLYDYRNKNQ---LRKLIDIQNMTPLVHVS 227
                +   +           + +  +  +     R+K+     + +  ++ +  L+ +S
Sbjct: 547 EVLAQVFMHMLNDLKHIKTLKQLQDMQDPDCFNKVRDKHVTILAKNMAGLKELFELITLS 606

Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
                S +  +    VA     +  +    ++G++ +     + ++     T  ++    
Sbjct: 607 HTEYLSYNRKSTANVVAEPRIIRKEIEKRRVNGNLLIGSSCVNGEVFDMAQTRSEKELAE 666

Query: 288 VPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLEN-LTLLRQQTNLRDRFKAIYN 346
                  +       + P+   +        +D  R  E  L+++ +   +     A  +
Sbjct: 667 ------VMQFYDYIEIQPLANYRFLVERNSIVDEARLKEILLSIVEKAEEMGKIIVATSD 720

Query: 347 KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLST---LNLPFSDRRLPELFFRY 403
             Y   ++ +   +Y    A    +    I      +       +L  +D  L E  +  
Sbjct: 721 AHYVHPNEKLIRDIYINSQAIGGMRHALYIYNQERRRKFKSPDQHLRTTDEMLKEYAWLG 780

Query: 404 RARNFPHTLSE----KEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEG 455
           + R +   +       ++ + +   K  L    IE    KL+ +    + +  G    + 
Sbjct: 781 QQRAYDMVIKNTKAIADQIEVIRPVKDALYPPDIEGSDQKLREICFENAHKKYGPVLPDI 840

Query: 456 LINALYEYLQWVI 468
           +   L   L  +I
Sbjct: 841 VEKRLNRELDSII 853


>gi|116671305|ref|YP_832238.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116611414|gb|ABK04138.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 254

 Score = 86.8 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 58/186 (31%), Gaps = 22/186 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET GR+    R    +   VD     I   E              EA  + G+T ++
Sbjct: 30  FDLETTGRNSRAARIVTASVTVVDADGSVITEHEWLA---DPGIEIPAEASEVHGVTTER 86

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G   AE +R +         +   +   N  +D         R             
Sbjct: 87  ARLEGRPAAEVTRELASVLQGLFDDGIPVIAFNASYDFTVLAAESARYGIPQL------- 139

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            +R+ +LD         P  +             L  L     +   NAH + AD  ATL
Sbjct: 140 -NRFPVLD---------PYIMNKQVDRFRKGKRTLTALCEEYKVNLDNAHTSAADALATL 189

Query: 186 ALVWLI 191
            ++  +
Sbjct: 190 RMLDAM 195


>gi|254495198|ref|ZP_05108122.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85819550|gb|EAQ40707.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 461

 Score = 86.8 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 29/251 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G      +  + +    D + + I+           +    P    +TGIT
Sbjct: 2   YTVIDIETTGNGFKGQKITEISIFVFDGK-KIIDEFTSL---INPEQNIPPFITNLTGIT 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E ++++ +        I   +N+ FD    R+ F    +D  R     
Sbjct: 58  NAMVRYAPKFH-EIAKKVEELTRD---TIFVAHNVNFDYNIIRDEFKSLGFDFKRKK--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L ++ +   I     H AK D  AT
Sbjct: 111 -------LCTVRLSRKI----------MPGLRSYSLGNICIDENIPINGRHRAKGDAEAT 153

Query: 185 LALVWLIREKKPKL-FEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
             L   + E+          + R++      +  + +   +  +      +++   I  V
Sbjct: 154 TELFRRLIERDDSFIINSFLNPRSRQATLPPLLDKKVVDNLPETFGVYYFKNSAKEIIYV 213

Query: 244 AWHPRYKDSVI 254
                 K  VI
Sbjct: 214 GKANNIKQRVI 224


>gi|326796075|ref|YP_004313895.1| DNA polymerase III subunit epsilon [Marinomonas mediterranea MMB-1]
 gi|326546839|gb|ADZ92059.1| DNA polymerase III, epsilon subunit [Marinomonas mediterranea
           MMB-1]
          Length = 235

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 65/223 (29%), Gaps = 33/223 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           V+ D ET G D     R  +   V      E I        F      D   + EA  + 
Sbjct: 4   VVLDTETTGIDPKQGHRIIEIGCV------EMIGRKLTKRHFHVYINPDREVEEEAFQVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +          E ++    F       I   +N  FD  +  + F           
Sbjct: 58  GISNEFLADKPRFH-EIAQEFLDFIRGAELII---HNAPFDVGFMDHEFSMLGNFPKTR- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179
             +    +D L   R  +  + +               L  L    GI+  H   H A  
Sbjct: 113 --DVCEIFDSLVFARKKHPGAKN--------------NLDALCRRYGIDNSHRELHGALL 156

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
           D      +  L+   +  L   + D         + +I+ ++P
Sbjct: 157 DSEILADVYLLMTGGQTSLGLSMNDGSEGGDSDNVGEIRRLSP 199


>gi|323485384|ref|ZP_08090732.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163]
 gi|323401247|gb|EGA93597.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163]
          Length = 263

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 58/204 (28%), Gaps = 28/204 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V  D ET G D   D+  +   V V    E  E+   F          D     +TG
Sbjct: 24  DSYVAIDLETTGLDPKHDKIIEIGAVLV-IDGEIKETFSTF---VNPRRELDGRIRELTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          +    I +         +  ++I FD  + +               
Sbjct: 80  ITGEMTAGAP----DIGDVIGRVVEFCRDLPLLGHHIIFDYSFLKRAAVNKGL------- 128

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               S  D L + R                       L++ +   GI+  +AH A AD  
Sbjct: 129 VFEKSGIDTLTLCRRF-------------MPEEEKKNLENASRYYGIKQTDAHRALADAL 175

Query: 183 ATLALVWLIREKKPKLFEYLYDYR 206
               L   ++          +  +
Sbjct: 176 TAHLLYRNVKRSHFSSAPEAFRCK 199


>gi|34556664|ref|NP_906479.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM
           1740]
 gi|34482378|emb|CAE09379.1| DNA POLYMERASE III EPSILON SUBUNIT DNAQ [Wolinella succinogenes]
          Length = 206

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 69/215 (32%), Gaps = 34/215 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFIT 61
             F I D ET G   A D+  +   +   +  + I+S E + FCK   +Y+       IT
Sbjct: 14  QRFCIVDVETNGSLPAKDQIIEIGAILY-QGGKIIDSFESYVFCKEVPEYI-----TKIT 67

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++         E   R   F       +   +N  FD  +   +  R+  D     
Sbjct: 68  GITSEELKDAP-SMKEVLTRFRLFL---GDAVFVAHNALFDYGFLGAMMKRSGMDRLHN- 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 +   +D+ R              +   A  + L  L     I    +H A AD 
Sbjct: 123 -----RKLCTIDLAR--------------KTIPADRYGLSFLNEFLEIHTEVSHRAYADA 163

Query: 182 YATLALVWLIREKKPKLF---EYLYDYRNKNQLRK 213
              L +      + P      E L  + +    + 
Sbjct: 164 LTALRVFEESLRRVPSEIITTEELISFSSPKGAKN 198


>gi|187931822|ref|YP_001891807.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712731|gb|ACD31028.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 230

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 63/209 (30%), Gaps = 24/209 (11%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V        +   F+C P   Y  +  A+ I G+T
Sbjct: 5   VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YEVEAGALAIHGLT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E     ++ +         +  +N  FD  +    F     + Y     N
Sbjct: 62  NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWEFSLLKNNKYGTLEQN 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D LD+ R  +    +               L  L        +H   H A  D  
Sbjct: 118 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L        +KN +
Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 192


>gi|121602632|ref|YP_988343.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
           KC583]
 gi|120614809|gb|ABM45410.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
           KC583]
          Length = 234

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 61/214 (28%), Gaps = 35/214 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61
           +I+D ET G D   DR  +   V      E ++       F         +   E V I 
Sbjct: 4   IIFDTETTGLDKDNDRIIEIGCV------EMVDRYLTGRQFHVYLNPQGVIIPDEVVAIH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T ++   +     + +  + +F    +  ++  +N  FD  +      R         
Sbjct: 58  GLTNERLKGEKK-FDDIADELLEFI---DGAMMIAHNANFDISFLNAELKRVNKPLISID 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                   D L + R  +   P+               L  L    GI++ +   H A  
Sbjct: 114 N-----VIDTLAMARRKFPMGPN--------------SLDVLCKRFGIDNSHRILHGALL 154

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
           D      +   +   K     +            
Sbjct: 155 DAEILADVYIELIGGKQGTLGFYNSNGRHLNTEN 188


>gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 234

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 56/218 (25%), Gaps = 27/218 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G   A   R  + A V V            +      D   D  A  + GIT
Sbjct: 4   IFLDTETTGLYPAQGHRIIEIAAVEV-INRRITSQH--YHVYLNPDREIDAGAQEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+       F       I   +N  FD  +      R            
Sbjct: 61  LEFLQDKPR-FADVVGEFLDFVQDSELII---HNAPFDVGFLNAELGRIEKPGIESVASG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + + +     +               L  L    GI++     H A  D  
Sbjct: 117 ---IIDTLKMAKEMRPGQRN--------------NLDALCRHFGIDNSKRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
               +   +   +  L   + D    N     + IQ +
Sbjct: 160 LLADVYLAMTRGQESLIIDMLDTPVHNDDNDALQIQAI 197


>gi|225419839|ref|ZP_03762142.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme
           DSM 15981]
 gi|225041521|gb|EEG51767.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme
           DSM 15981]
          Length = 255

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 59/202 (29%), Gaps = 28/202 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           TN +V  D ET G +  LD+  + A +RV                           V +T
Sbjct: 13  TNSYVAIDIETTGLEPRLDKITEIAALRV-VDGAVEGRFVTL---VNPGRPLGERIVELT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT                 I           +  +NI FD  + +        D  R  
Sbjct: 69  GITDGMLAGAPA----IGDVIGPLVRFCGDLPLLGHNILFDYSFLKRAAVNQGLDFQREG 124

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++ RA                      L        IE V AH A+AD 
Sbjct: 125 -------IDTLNLCRAFMPGEHKKN-------------LSAACAFYCIEQVEAHRAEADA 164

Query: 182 YATLALVWLIREKKPKLFEYLY 203
            +   L   + E + +  E L+
Sbjct: 165 LSAHLLYQKLLEGRGEGREELF 186


>gi|295133359|ref|YP_003584035.1| exonuclease domain-containing protein [Zunongwangia profunda
           SM-A87]
 gi|294981374|gb|ADF51839.1| exonuclease domain-containing protein [Zunongwangia profunda
           SM-A87]
          Length = 475

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 68/226 (30%), Gaps = 30/226 (13%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    F I D ET G  +  ++  +   V V +  E I                      
Sbjct: 1   MKEVKFAIIDIETTGGGIKGNKITEI-CVLVVQNGEVINEYTSL---VNPGTEIPLYIET 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I  +  +      +E + +I +       CI   +N+ FD    +  F         
Sbjct: 57  LTNINDKMLVDAPK-FSEIASKIQEITRD---CIFVAHNVNFDYNIIKAEF--------- 103

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
               N + +   L  +R      P             S+ L +L  +  I H N H A  
Sbjct: 104 -ESLNLSFQRKRLCTVRLAKKLIPGLF----------SYSLGNLCTSINIPHDNKHRAYG 152

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
           D  AT+ L     +  P  +E   D+ N+      +          
Sbjct: 153 DCEATVTLFKRFIDLDPD-YEVFKDFLNQKTAASYLPPNFRKSDFE 197


>gi|257094696|ref|YP_003168337.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047220|gb|ACV36408.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 729

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 57/189 (30%), Gaps = 27/189 (14%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + ++D ET G   +  D   Q    R+     ++   E F            +++ + G
Sbjct: 538 SYTVFDTETTGLQPSQGDEIIQIGATRIVN--RRLLRHECFDQLIDPRRPLSQQSIEVHG 595

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  +    ++      + QF +     ++  +N  FD  + +    +          
Sbjct: 596 ITRELLVGQPTID----TVLPQFQTFCADTVLVGHNAAFDMRFLQLKEKQTG-------- 643

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +R         +          S +L+ +A   G+     H A  D  
Sbjct: 644 ------------VRFDQPVLDTLLLSAVLHPNQNSHRLEAIAERLGVSVFGRHTALGDAM 691

Query: 183 ATLALVWLI 191
            T  +   +
Sbjct: 692 VTGEVFLKM 700


>gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
 gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
          Length = 1442

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 49/387 (12%), Positives = 108/387 (27%), Gaps = 40/387 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI+D ET G     D   +F  + + +  ++I     F  KP      +     +T I
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAI-IMQNNKQIGDKIQFLVKPI--QQINENITNLTNI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      + E     +I + F   N  ++ +N I FD  +      +   +       
Sbjct: 465 SQEMVNNA-IDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPL----- 516

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D L + RAI  F               S +L  +     +++ +  AH A  D 
Sbjct: 517 -KNPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDEIAHRADYDA 561

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTAL 239
                +  +++      F          +L+ ++         +          +    L
Sbjct: 562 IVLADVFKVMKNNLFNDFGITNLNEINTKLQTVMLKNRSFGNWINLYIKNQVNVKDMYEL 621

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQ----DLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
           ++       Y    I  +   + +        +    L   L++  D+    +   ++  
Sbjct: 622 VSISHTDMYYTRPTITTSFLANKKDKLIISNSVHESDLINALYSKSDD---EIKSIMQRY 678

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                P +    +     + +             L+     L        +  Y      
Sbjct: 679 DFITLPSIGSQKH---LVYAKKITIENVQKAFKKLVYLALELNKIIIYSSSPYYFLKDDK 735

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPE 382
               +Y        +          P+
Sbjct: 736 KFYDVYVNTKGLEGKSHRFANEEYVPD 762


>gi|269838290|ref|YP_003320518.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787553|gb|ACZ39696.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
          Length = 335

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 52/186 (27%), Gaps = 23/186 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G           A   VD+    +        +P +      EA  + GIT 
Sbjct: 25  VYLDTETTGLGPD-AEIVDIA--VVDQAGRVL---LNSLVQPRN--PIPAEATRVHGITN 76

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +  +       E  + + +      T II               + R         +   
Sbjct: 77  KMVMNAPE-WPEVYQELARIIQDYPTLII-----------YNAAYDRRLISQTCRRYGIS 124

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
             R D    M    A+  +   W +R        L+  A+  G      H A  D  A  
Sbjct: 125 VPRADWQCAMLNYAAYRGE---WNARYGNHRWHTLEKAAIETGAPMPPTHRALDDAQACR 181

Query: 186 ALVWLI 191
            +V  +
Sbjct: 182 HVVLSM 187


>gi|118497560|ref|YP_898610.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           novicida U112]
 gi|195536256|ref|ZP_03079263.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118423466|gb|ABK89856.1| DNA polymerase III, epsilon subunit [Francisella novicida U112]
 gi|194372733|gb|EDX27444.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 230

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V        +   F+C P   Y  +  A+ I G+T
Sbjct: 5   VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YEVEAGALAIHGLT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E     ++ +         +  +N  FD  +          + Y     N
Sbjct: 62  NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D LD+ R  +    +               L  L        +H   H A  D  
Sbjct: 118 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L        +KN +
Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 192


>gi|330976913|gb|EGH76936.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 203

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +  Q   +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +  F     +  +  +N  FD  +      R        
Sbjct: 57  TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR-------I 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                 S    L + R                 GA + KL  L       +   AH A A
Sbjct: 106 ERTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +  +  +  
Sbjct: 153 DAEMAANLTAYLTNELRQTH 172


>gi|330938176|gb|EGH41873.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 203

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +  Q   +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +  F     +  +  +N  FD  +      R        
Sbjct: 57  TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR-------I 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                 S    L + R                 GA + KL  L       +   AH A A
Sbjct: 106 ERTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +  +  +  
Sbjct: 153 DAEMAANLTAYLTNELRQTH 172


>gi|289649837|ref|ZP_06481180.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 204

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 51/201 (25%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G       R  + A V +  Q   +E  +                  
Sbjct: 1   MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+          E      +  F        +  +N  FD  +      R       
Sbjct: 57  LTGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178
                           +   +F+   +       GA + KL  L     +     AH A 
Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152

Query: 179 ADVYATLALVWLIREKKPKLF 199
           AD      L   +  +     
Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173


>gi|289627588|ref|ZP_06460542.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 204

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 51/201 (25%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G       R  + A V +  Q   +E  +                  
Sbjct: 1   MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+          E      +  F        +  +N  FD  +      R       
Sbjct: 57  LTGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178
                           +   +F+   +       GA + KL  L     +     AH A 
Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152

Query: 179 ADVYATLALVWLIREKKPKLF 199
           AD      L   +  +     
Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173


>gi|257482174|ref|ZP_05636215.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298488861|ref|ZP_07006886.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156614|gb|EFH97709.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 204

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 51/201 (25%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G       R  + A V +  Q   +E  +                  
Sbjct: 1   MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+          E      +  F        +  +N  FD  +      R       
Sbjct: 57  LTGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178
                           +   +F+   +       GA + KL  L     +     AH A 
Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152

Query: 179 ADVYATLALVWLIREKKPKLF 199
           AD      L   +  +     
Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173


>gi|225012068|ref|ZP_03702505.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium
           MS024-2A]
 gi|225003623|gb|EEG41596.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium
           MS024-2A]
          Length = 1436

 Score = 86.4 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 77/249 (30%), Gaps = 22/249 (8%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D + + +   E +  KP    +P 
Sbjct: 2   YLIFDTETTGLPKKWNAPLSDAENWPRCIQIAWQIHDAKGDLVW-HENYLIKPDGYTIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            ++  I GI+   A   G+  AE   + H      +   +  +N+ FD       + R  
Sbjct: 61  -DSEKIHGISTALAEEQGIPLAEVLEKFHAALRTVD--FVVGHNVSFDRNIMGAEYLRAD 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                      ++  +    +  +        + P+  +                    A
Sbjct: 118 LADVLEDKMVIDTCTEETAQLCQLTGGRGGKFKLPTLSELYH--------FLFQEGFEEA 169

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           H+A ADV AT      +  K     +   +   + ++ K         L H +    + +
Sbjct: 170 HNATADVEATTRAFLELLRKDIIHPKVFENQALQTEVLKAQTPFKTIGLTHQNLKKASEK 229

Query: 235 SNTALIAPV 243
                  PV
Sbjct: 230 LKKKEATPV 238


>gi|317489230|ref|ZP_07947747.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325832235|ref|ZP_08165234.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
 gi|316911631|gb|EFV33223.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325486071|gb|EGC88525.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
          Length = 998

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 64/189 (33%), Gaps = 30/189 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ V+ D ET G     D   Q A  R+  Q E +E    F            +   +T 
Sbjct: 40  HNVVVLDTETTGFSFNHDELTQIAAARM-EQGEIVEWFITF---VNPGKPIPEDVAHLTD 95

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I         +  A+   ++ +F        +  +N  FD  ++    + + Y     +W
Sbjct: 96  IHDSDVADAPLP-ADALAKLVEFIGDAK---VVAHNAEFDRTFTTR--HPSGYPLLENTW 149

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D LD+ R                    S +L DL  A G      H A ADV 
Sbjct: 150 ------IDSLDLARIA-------------LPRMKSHRLLDLVRAFGAPLST-HRADADVE 189

Query: 183 ATLALVWLI 191
           AT A+  ++
Sbjct: 190 ATCAIFRIL 198


>gi|312883799|ref|ZP_07743518.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368548|gb|EFP96081.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 204

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 59/195 (30%), Gaps = 30/195 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D+ET G    + DR  +   V++    + ++S +         +         TGIT
Sbjct: 8   VVLDFETTGLSPNMGDRAIEIGAVKL-VDGQVVDSFQRLM---NPGFRVSTFIEGYTGIT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E      QF +  N   +  +N  FD  +      R            
Sbjct: 64  NNMLRTAP-SCDEVMTSFSQFIAGEN---LIAHNASFDKRFLDAELERVNCG-------- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183
                           F+   +        A S KL +L     IE+    H A AD   
Sbjct: 112 ------------YSGEFACSLLVARRLIQDAPSHKLGELVRHRNIENDGVFHRALADAQV 159

Query: 184 TLALVWLIREKKPKL 198
           T  L  L+ E+  + 
Sbjct: 160 TAKLWLLMVEELEQY 174


>gi|92114064|ref|YP_573992.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
           DSM 3043]
 gi|91797154|gb|ABE59293.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
           DSM 3043]
          Length = 253

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 64/207 (30%), Gaps = 27/207 (13%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  +   V V            +      +   DPEAV + GIT
Sbjct: 4   IVLDTETTGIDPKDGHRLIEIGAVEV-VNRRLTG--NNYHQYINPERDIDPEAVEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF---YRNFYDSYRWS 121
            ++   + V  A+ +    ++        +  +N  FD  +  + F   +          
Sbjct: 61  NERVADEPV-FADIADAFWEYIRGAE---LVIHNAAFDVGFIDHEFGLLHDKRGGPRLGP 116

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
             +  S  D L + R ++    +               L  L    GI++     H A  
Sbjct: 117 VADYCSVLDTLAMARKLHPGQRN--------------NLDALCKRYGIDNGRRVLHGALL 162

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYR 206
           D      +   +   +  L     + R
Sbjct: 163 DAEILSDVYLTMTGGQTALSLAGIEER 189


>gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
 gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
          Length = 389

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 53/202 (26%), Gaps = 28/202 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A V                        P P  V I G+T
Sbjct: 77  YAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTL---LDPGCDPGP--VHIHGLT 131

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q+        A  +  +    +     ++  +N  FD         R            
Sbjct: 132 RQRLAGSP-TFAAVADEVAGLLA---GRVLVAHNAAFDWRMLAGEAMRIG---------- 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                        +                  S +L  LA   G+    AHDA+ D    
Sbjct: 178 ---------TTIPVEWRLCTLTLASRLGLELPSLRLASLAAYWGVVQRRAHDAQDDAEVL 228

Query: 185 LALVWLIREKKPKLFEYLYDYR 206
            AL+  I ++    +  L   R
Sbjct: 229 AALLPRILQRAADQYLELPLTR 250


>gi|333023692|ref|ZP_08451756.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
 gi|332743544|gb|EGJ73985.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
          Length = 239

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 57/193 (29%), Gaps = 18/193 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A +R+D                        EA  I GI   +
Sbjct: 11  FDLETTGTDVEQDRIVTAAVIRLDSSGAV---AHTRTWLLDPGVEIPAEATAIHGIPTAR 67

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A  DG         I +  +      T ++  N  R+D         R+   +       
Sbjct: 68  ARADGAPARGAVAEITEALAAELRVGTPLVVMNA-RYDLSLLDRECRRHGVPALAE--LL 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G     ++D +              +      S  L  L     +    AHDA++D  A 
Sbjct: 125 GAEPAPVIDPLVLDKH---------ADRYRRGSRVLAALCAHYDVRLDTAHDARSDALAA 175

Query: 185 LALVWLIREKKPK 197
             L   +    P 
Sbjct: 176 TLLARSLGAHHPS 188


>gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 1530

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 26/191 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G     D+  + AGV++ +  +KI+  +                + IT I
Sbjct: 449 TYVVFDLETTGFSSTKDKIIEIAGVKI-KHGKKIQEFQAL---INPQEKLSQTIINITNI 504

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         ++    + +  F +    CI+  +N  FD  + +                
Sbjct: 505 TDDMLEGKNTID----QVLPDFLNFIENCILVAHNATFDITFLKEKIKELGI-------- 552

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++D M     F  + +++         F L+ LA    ++    H A +D   
Sbjct: 553 -AYKPQPVIDTMTLSQRFFSEFLKY---------FSLKRLATVFKVKMEEHHRALSDANT 602

Query: 184 TLALVWLIREK 194
           T  +   + ++
Sbjct: 603 TAQVFIKMIDQ 613


>gi|81428523|ref|YP_395523.1| ATP-dependent helicase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610165|emb|CAI55214.1| Putative ATP-dependent helicase, DinG family [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 944

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 28/201 (13%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G +    DR  QF    V +  + I   +              +   +T I
Sbjct: 7   YAVVDLETTGTNIKDGDRIIQFGCALV-QNGKII---QTISQDVNPLRDVPTKIQHLTHI 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +     + E + +  + +  S     +   +NI FD  +      R           
Sbjct: 63  TADQLELAPIFE-DLAPTLVEILS---GTVFVAHNINFDLPFLNGELTRVGL------QP 112

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D +++ + I                A S++LQDL     IEH N H A +D   
Sbjct: 113 LDLAGIDTVELAQII-------------LPEAPSYRLQDLTQLLEIEHDNPHQADSDALV 159

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L   +  +   L     +
Sbjct: 160 TAKLFLKLSARLQALPSVTLN 180


>gi|256421379|ref|YP_003122032.1| exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
           DSM 2588]
 gi|256036287|gb|ACU59831.1| Exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
           DSM 2588]
          Length = 257

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 84/254 (33%), Gaps = 28/254 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +     + D ET G +VA DR  + A ++V       +S +    +        P +  I
Sbjct: 6   LKRPLAVIDLETTGTNVATDRIIEIAIIKVFPD----KSVQTKVKRIHPGMPIPPASTAI 61

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +          + +  + Q+    +  + GYN+ RFD       F R   D    
Sbjct: 62  HGISDEDIKDCP-TFKQCANELRQYMENCD--LAGYNSNRFDIPLLVEEFLRAGLD---- 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +D  D            ++  +       +  +DL         NAH A+AD
Sbjct: 115 --------FDTKDRRFIDVQKIFHLMEKRTLSAAYKFYCDKDLT--------NAHSAEAD 158

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT  ++     +  +L   +       +    +D      + +   MF   +     +
Sbjct: 159 ALATYEILEAQLSRYEQLQAEVAPLAEFTKEDDYVDFARRMVVQNGVEMFNFGKYKGRAV 218

Query: 241 APVAW-HPRYKDSV 253
             V    P+Y D +
Sbjct: 219 REVLKIEPQYYDWM 232


>gi|298209279|ref|YP_003717458.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus
           HTCC2559]
 gi|83849206|gb|EAP87075.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus
           HTCC2559]
          Length = 258

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 77/255 (30%), Gaps = 28/255 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G +VA D+  + + ++V     K    E        +     E   +
Sbjct: 5   LTKPICFFDLETTGVNVAKDKIVEISILKVFPNGNK----ESKTWLVNPERPIPAETTAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +K   +     E S  I++        + G+N+ RFD         R   D    
Sbjct: 61  HGITDEKVANEP-TFKELSSSIYEMIK--GCDLGGFNSNRFDIPLLAEELLRADID---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                       D+  +             +     ++K          +  +AH A AD
Sbjct: 114 -----------FDMKNSSAVDVQTIFHKMEQRTLVAAYKF-----YCDKDLTDAHSAAAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH-VSGMFGASRSNTAL 239
             AT  ++    +K P L          +  ++  D           +  F   +    L
Sbjct: 158 TEATYEVLKAQLDKYPDLQNDTKWLAEFSSRKRFADFAGFIAYNKDGAETFSFGKHKGKL 217

Query: 240 IAPVAWHPRYKDSVI 254
           +  V  +       I
Sbjct: 218 VEDVLENEPGYFGWI 232


>gi|27479696|gb|AAO17223.1| DnaQ [Photorhabdus luminescens]
          Length = 248

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 57/199 (28%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   VVLDTETTGMNKLGVHYEGHKIIEIGAVEV-VNRRLTGRH--FHVYIQPDRLVDPEAFEV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +      +  A+ +    +F       I   +N  FD  +    F +   D    
Sbjct: 66  HGISDEFLQDKPL-FADVADEFVEFIRGAELII---HNAPFDIGFIDYEFGKLDRDIPPT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +     D L + R ++                    L  L     I++     H A 
Sbjct: 122 --ADFCKITDSLQLARGLFPG--------------KRNNLDALCDRYDIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +  ++   +  
Sbjct: 166 LDAEILADVYLIMTGGQTS 184


>gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1430

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 26/194 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T   V +D ET G + + D   + A       ++ IE+   F           P  V I 
Sbjct: 762 TYRIVFFDIETTGLNPSTDAIVEVAM------FDPIEN-STFHTLVNPQRSITPRTVGIH 814

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFYRN 113
            IT         V+   ++ I Q+  +            ++G+N    D+   R     +
Sbjct: 815 HITNAMVRDAPTVDV-VAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECH 873

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW-----PSRDDGATSFKLQDLALANG 168
             +       +G    D L ++ A  +     ++      P  D  A+S +L  L  A  
Sbjct: 874 APEC----QLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALN 929

Query: 169 I-EHVNAHDAKADV 181
           +    + H A  D 
Sbjct: 930 VRPEGDLHRADTDT 943


>gi|313673170|ref|YP_004051281.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939926|gb|ADR19118.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 226

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 58/197 (29%), Gaps = 26/197 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G D+   +    A V++ + ++ I+   VF          DPE++   GIT
Sbjct: 44  FCVVDTETTGLDINTAKIINLAAVKI-KGFKIIDYYNVF---INPGKSIDPESIKWHGIT 99

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E      +F       +I  ++I+FD           F  S +    +
Sbjct: 100 DEMVKDKP-FVVEVMPEFVKFIRKS---VIVGHHIKFDVDMISKELMETFGCSLKQKCLD 155

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               +                              L  L     +     H A  D  AT
Sbjct: 156 TMFIY------------------TRGIAKKNDHVGLDFLLDLYKVRCNGRHTALGDAMAT 197

Query: 185 LALVWLIREKKPKLFEY 201
             +   +  +    F+ 
Sbjct: 198 AEVFNKMVMQISDRFKT 214


>gi|260912251|ref|ZP_05918803.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260633685|gb|EEX51823.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 284

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   +++D ET G D+  DR  Q + ++V    +  E  E  F  P        E   +
Sbjct: 5   LTRPLIVFDLETTGLDLVNDRIIQISYIKVYPDGK--EERENLFVYP--GKPIPDEVSEL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           TGIT          E E + R+++ F        G+N+  FD       F R   D 
Sbjct: 61  TGITTDLVEDAPTFE-ELAPRLNEVFK--GCDFAGFNSNHFDIPMLAEEFLRAEIDF 114


>gi|163845121|ref|YP_001622776.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|163675844|gb|ABY39954.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 332

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEIARITGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I +        II  +N  FD  +                  
Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 170 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223

Query: 184 TLALVW 189
            LA++ 
Sbjct: 224 LLAVLK 229


>gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum
           JPCM5]
 gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania
           infantum JPCM5]
          Length = 1430

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 26/194 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T   V +D ET G + + D   + A       ++ IE+   F           P  V I 
Sbjct: 762 TYRIVFFDIETTGLNPSTDAIVEVAM------FDPIEN-STFHTLVNPQRSITPRTVGIH 814

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFYRN 113
            IT         V+   ++ I Q+  +            ++G+N    D+   R     +
Sbjct: 815 HITNAMVRDAPTVDV-VAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECH 873

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW-----PSRDDGATSFKLQDLALANG 168
             +       +G    D L ++ A  +     ++      P  D  A+S +L  L  A  
Sbjct: 874 APEC----QLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALN 929

Query: 169 I-EHVNAHDAKADV 181
           +    + H A  D 
Sbjct: 930 VRPEGDLHRADTDT 943


>gi|158317483|ref|YP_001509991.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
 gi|158112888|gb|ABW15085.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
          Length = 237

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 60/199 (30%), Gaps = 21/199 (10%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D+ET G DV  DR  Q A ++V                          A  I GIT +
Sbjct: 10  VLDFETTGTDVETDRAVQVALLKVGPTGV----LNQLCQIIDPGVDVPEAAARIHGITTE 65

Query: 67  KALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           +A R+G   AE   R+ Q       +   +   N  FD         R+          +
Sbjct: 66  RARREGRDPAEVLGRVGQALEGVWRDGIPVVIMNSSFDLTLLDRELRRH----------H 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G S  +   ++        +               L  LA    +    AHDA AD   T
Sbjct: 116 GRSLAEADMLVLDPMVIDREL-----DPRRPGKRTLTALATHYRVRQEGAHDALADCLTT 170

Query: 185 LALVWLIREKKPKLFEYLY 203
             + W +    P       
Sbjct: 171 ARIAWRLPRMHPDWAAMGL 189


>gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 658

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 71/241 (29%), Gaps = 47/241 (19%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     DR    A V V     +                P P  V + G+T ++
Sbjct: 23  VDVETSGLVARRDRVLSVAVVTVGPDGAQTGEFSTL---LDPGCDPGP--VHVHGLTAER 77

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                  E E ++RI Q        ++  +N +FD  +  + F R               
Sbjct: 78  LHGAPAFE-EVAQRISQMLE---GRVLVAHNAQFDYDFLAHEFARAGV------------ 121

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
               L V R +   + +    P   D     +L  LA   G+  + AHDA  D      +
Sbjct: 122 ---SLPVARRLCTLALNRRVDPPTQD----LRLGTLAAHYGVPQLRAHDALDDTRVLAGV 174

Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
           +                      LR+   +    P V       A  + +    P A+  
Sbjct: 175 LR-------------------ASLREAARLDLRLPFVACPPRQDARFTPSPPKTPCAYRN 215

Query: 248 R 248
            
Sbjct: 216 P 216


>gi|282879820|ref|ZP_06288549.1| exonuclease [Prevotella timonensis CRIS 5C-B1]
 gi|281306330|gb|EFA98361.1| exonuclease [Prevotella timonensis CRIS 5C-B1]
          Length = 286

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    +I+D ET G D+  DR  Q + ++V    E+ E   +F      +     E + +
Sbjct: 5   LKKPLIIFDLETTGLDLVNDRIIQISYIKVLPNGEE-ERESIF---VNPEKPIPHEVIEL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           TGIT +          E +  +   F   +  I G+N+  FD       F R   D 
Sbjct: 61  TGITNEDVANAPK-FKEIAAHLQNQFKDSD--IAGFNSNHFDVPLLAEEFLRAGIDF 114


>gi|260467189|ref|ZP_05813366.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029042|gb|EEW30341.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 241

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 27/185 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +  GV +  ++     T   +  P        EA  + GI+ 
Sbjct: 4   IIFDTETTGLDSRDDRVIELGGVELVNRF-PTGRTFHHYINPQ-GRAIHAEAQAVHGISA 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                       F+  + ++ +  +   +  +N  FD  +    F R  +        + 
Sbjct: 62  ADLAGKPT----FAEIVEEWLAFTDGAKLVAHNATFDIGFLNVEFGRLGHPVI-----DP 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183
               D L + R  +   P+               L  L    GI++     H A  D   
Sbjct: 113 GLVVDTLALARRKHPMGPN--------------SLDALCRRYGIDNAKRTKHGALLDSEL 158

Query: 184 TLALV 188
              + 
Sbjct: 159 LAEVY 163


>gi|56707679|ref|YP_169575.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670150|ref|YP_666707.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134301975|ref|YP_001121944.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|224456748|ref|ZP_03665221.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370187|ref|ZP_04986193.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874491|ref|ZP_05247201.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604171|emb|CAG45181.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320483|emb|CAL08564.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134049752|gb|ABO46823.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151568431|gb|EDN34085.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840490|gb|EET18926.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158843|gb|ADA78234.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 230

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V        +   F+C P   Y  +  A+ I G+T
Sbjct: 5   VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YEVEAGALAIHGLT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E     ++ +         +  +N  FD  +          + Y     N
Sbjct: 62  NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D LD+ R  +    +               L  L        +H   H A  D  
Sbjct: 118 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L        +KN +
Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 192


>gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 930

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 56/188 (29%), Gaps = 31/188 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   FV  D ET G D   D   +   V+V    ++ +  +              +   +
Sbjct: 1   MMFSFVALDLETTGLDCWSDDIIEIGMVKV-IDGQERDFFQSL---VRPGGPLPVKIKQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TG+                 +I  F        +  +NI+FD  +               
Sbjct: 57  TGLKDDDFQSAPW-FQTIIPKILTFI---GDLPLVGHNIKFDRDFLAAAC---------- 102

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N  +D L++ R                  A S +L +L    G+E    H A  D
Sbjct: 103 GHQLPNDLYDTLELARI-------------LQPSAPSHRLGELCKIAGVEVNVEHRALDD 149

Query: 181 VYATLALV 188
             ++  L+
Sbjct: 150 ARSSARLM 157


>gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1]
          Length = 235

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 57/189 (30%), Gaps = 35/189 (18%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61
           +I+D ET G D   DR  +   V      E ++       F         +   E V I 
Sbjct: 4   IIFDTETTGLDKDSDRIIEIGCV------EMVDRYLTKRQFHVYLNPQGVIIPDEVVAIH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T ++   +   E + +    +F    +   +  +N  FD  +      R         
Sbjct: 58  GLTNERLKNEKKFE-DIADEFLEFI---DGATMVAHNASFDISFLNAELGRINKPLISVD 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                   D L + R  +   P+               L  L    GI++ N   H A  
Sbjct: 114 N-----VIDTLAIARQKFPMGPN--------------SLDVLCKRFGIDNSNRVLHGALL 154

Query: 180 DVYATLALV 188
           D      + 
Sbjct: 155 DAEILADVY 163


>gi|260775260|ref|ZP_05884157.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608441|gb|EEX34606.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 246

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 59/203 (29%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           N  V+ D ET G +          R  +   V +    +       F      D    P+
Sbjct: 10  NRIVVLDTETTGMNREGGPHYQGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDREIQPD 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           AV + GIT +  +       E+     +F        +  +N  FD  +    F  N  D
Sbjct: 67  AVEVHGITDEFLVDKP----EYQDVHKEFLEFIKGAELVAHNAPFDTGFMDYEF--NMLD 120

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                 D+     D L + + I+                    L  L    GI+  H   
Sbjct: 121 PGIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCDRYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|118580761|ref|YP_902011.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379]
 gi|118503471|gb|ABK99953.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379]
          Length = 170

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 52/197 (26%), Gaps = 32/197 (16%)

Query: 1   MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M +   + D ET G       R  + A V +    + +   E        +    P A  
Sbjct: 1   MESGLAVVDVETSGLSPRGGGRVIEVAAVLLRE-GKVVGELESL---LRVNCSIHPAAAR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI  +        E        +F S      +  +N  FD  + R+           
Sbjct: 57  VHGIGWEMLRHAPEPE----DVWRRFLSFVGRRPLVAHNAPFDMGFIRHELALLGLPLAN 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA---HD 176
            S          +  +R      P+            S +L+ LA             H 
Sbjct: 113 RS----------ICTLRMARRRFPELA----------SHRLEALARHLLGSIPEDCRLHR 152

Query: 177 AKADVYATLALVWLIRE 193
           A  D      +   + E
Sbjct: 153 ALGDARLAARVWLAMNE 169


>gi|294668271|ref|ZP_06733376.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309790|gb|EFE51033.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 493

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 29/190 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           VI D E  G +   DR  + A +R D           +                +TGI  
Sbjct: 22  VIIDLEATGGNPYTDRITEIAFLRFDGNG-----VSSYRQLVNPQRNIPEFVSNLTGIDD 76

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         A+ S  +          ++  +N +FD  + R+ F R             
Sbjct: 77  EMVADAP-PFADLSDDLLHRLR---GTLLLAHNSKFDYTFLRHEFSRCRLSYAA------ 126

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L  ++      P   +            L  +   + I   + H A  DV A  
Sbjct: 127 ----PTLCTVQLSRRLYPQFFK----------HNLDSIIERHQIAVSSRHRAMNDVLALA 172

Query: 186 ALVWLIREKK 195
             + L     
Sbjct: 173 DYLELTAASH 182


>gi|302879448|ref|YP_003848012.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
 gi|302582237|gb|ADL56248.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
          Length = 303

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 39/191 (20%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ------WEKIESTEVFFCKPADDYLPDPEAVF 59
           V+ D ET G + A D   +   V  +           + S +             PE+  
Sbjct: 43  VVVDTETTGINSAQDAIIELGMVLFEYDPDTGEAGRVLGSFDQLE---DPGMAIPPESTE 99

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +      + +A  +  +          ++  +N +FD  +              
Sbjct: 100 VHGITDEMVQGKRIDDAAVAAFL------DGVSVVIAHNSKFDRVFLE------------ 141

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                   R  + + +    + +    +     +G  S KL  ++   G     AH A+ 
Sbjct: 142 -------KRLSVFETLPWGCSLAQVDWR----AEGIGSAKLDYISYQYGF-FYEAHRAEG 189

Query: 180 DVYATLALVWL 190
           D YA L ++  
Sbjct: 190 DCYALLEILQQ 200


>gi|210634765|ref|ZP_03298293.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279]
 gi|210158705|gb|EEA89676.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279]
          Length = 975

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 31/186 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G     +   + A  R+ R  E +E  + F        L   E   +T IT 
Sbjct: 48  VVLDTETTGLSHRENELIEIAAARL-RGREVVERFDTF---IKPHALIPAEITELTSITN 103

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                    E E   R+  F        +  +N  FD  +   +                
Sbjct: 104 ADVAHAPSAE-EAVARLADFV---GGAPVIAHNAAFDRGFIEAVSGGAEVTDIW------ 153

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D L + R                   +S KL  +A   G     +H A ADV A  
Sbjct: 154 ---IDSLALSRIA-------------LPRLSSHKLASMAELFGCS-GVSHRANADVEALC 196

Query: 186 ALVWLI 191
            +  ++
Sbjct: 197 GVWRIL 202


>gi|304382373|ref|ZP_07364875.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973]
 gi|304336490|gb|EFM02724.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973]
          Length = 284

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 77/268 (28%), Gaps = 25/268 (9%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   +++D ET G D+  DR  Q + ++V     ++    +F      +     E V +
Sbjct: 5   LTRPLIVFDLETTGLDLVNDRIIQLSYIKVLPDGTEL-RKNIF---INPERSIPKEVVEL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR- 119
           TGIT            E +  ++  F        GYN+  FD       F R   D    
Sbjct: 61  TGITDDDVKEAP-TFKEMAPDLNNEFR--GCDFAGYNSNHFDIPMLAEEFLRAGIDFDFS 117

Query: 120 ---------WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD---LALAN 167
                                            D     + +D   ++++          
Sbjct: 118 KCRLIDAQTIFHKMERRHLAAAYKFYCGRKMEEDFTAHRADEDTEATYRVLQGELEMYQP 177

Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
           G +       + D+                      +  +KN   K+I  ++  P     
Sbjct: 178 GKQEEAERQLENDMDVLAEFSKNNNNVDFAGRIVWKELTDKNG--KVITDKDGKP--QQQ 233

Query: 228 GMFGASRSNTALIA-PVAWHPRYKDSVI 254
            +F   +     ++  +   P Y   ++
Sbjct: 234 EVFNFGKYKGWAVSEVLHRDPGYYSWML 261


>gi|255037648|ref|YP_003088269.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
 gi|254950404|gb|ACT95104.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
          Length = 269

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +      +D ET G ++  DR  + + V+          TE+   +   +     E+  I
Sbjct: 6   LKKPIAFFDLETTGVNIVRDRIVEISVVKALVNG----ETEIRTRRINPEMPIPLESSLI 61

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            GI  +            ++ +  F       + G+N+ RFD       F R   D 
Sbjct: 62  HGIYDEDVKDAP-TFKSVAKNLASFLE--GCDLAGFNSNRFDIPMLVEEFLRVGVDF 115


>gi|167010822|ref|ZP_02275753.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 230

 Score = 86.4 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V        +   F+C P   Y  +  A+ I G+T
Sbjct: 5   VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YKVEAGALAIHGLT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E     ++ +         +  +N  FD  +          + Y     N
Sbjct: 62  NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D LD+ R  +    +               L  L        +H   H A  D  
Sbjct: 118 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L        +KN +
Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 192


>gi|307545281|ref|YP_003897760.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307217305|emb|CBV42575.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
          Length = 255

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 56/197 (28%), Gaps = 27/197 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  +   V +            +      +   + EAV + GIT
Sbjct: 4   IILDTETTGIDPREGHRLIEIGAVEM-VNRRLTG--NTYHQYINPERDIEAEAVEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF---YDSYRWS 121
            +K   + V  AE +     F        +  +N  FD  +  + F R            
Sbjct: 61  NEKVADEPV-FAEVADAFWAFIKGAE---LVIHNAPFDVGFIDHEFARLNEARGGPVLGP 116

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                   D L + R  +    +               L  L     I++ +   H A  
Sbjct: 117 VAEHCRILDTLQLARDKHPGQRN--------------NLDALCKRYEIQNGHRVLHGALL 162

Query: 180 DVYATLALVWLIREKKP 196
           D      +   +   + 
Sbjct: 163 DAEILADVYLAMTGGQT 179


>gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32]
 gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
 gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32]
 gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200]
          Length = 242

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           ++ D ET G +          R  +   V V            F          DPEA+ 
Sbjct: 11  IVLDTETTGMNQGSGAVYLGHRIIEIGCVEV-INRRLTGRY--FHQYINPGQAIDPEAIA 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT ++   +     + +++  +F    +   I  +N  FD  +  + F  +   S  
Sbjct: 68  VHGITDERVANEPRFH-QIAQQFIEFI---DGAEIVAHNANFDVSFMDHEF--SMLPSKG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
               +     D L++ + ++    +               L  L    GI++     H A
Sbjct: 122 PKTMDICDILDTLEIAKFLHPGQKN--------------NLDALCKRYGIDNSRRHYHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  ++   + K 
Sbjct: 168 LLDAEILADVYLIMTGGQTKF 188


>gi|239832702|ref|ZP_04681031.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
 gi|239824969|gb|EEQ96537.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
          Length = 353

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 55/195 (28%), Gaps = 32/195 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            +   ITGI
Sbjct: 95  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDICATFGALQQPSRPIPADITRITGI 154

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   +    I +        II  +N  FD  +                  
Sbjct: 155 TDEMVRGQTIPREKLDALIAE------ADIIIAHNAGFDRPF------------------ 190

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 +   +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 191 -----LERFSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 244

Query: 184 TLALVWLIREKKPKL 198
            LA++          
Sbjct: 245 LLAVLKEQSGDTTPF 259


>gi|289812334|ref|ZP_06542963.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 78

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/78 (67%), Positives = 62/78 (79%)

Query: 42  VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
           +F+CKPADDYLP P AV ITGITPQ+A   G  EA F+RRIH  F+VP TC++GYNN+RF
Sbjct: 1   MFYCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRF 60

Query: 102 DDYYSRNIFYRNFYDSYR 119
           DD  +RNIFYRNFYD Y 
Sbjct: 61  DDEVTRNIFYRNFYDPYA 78


>gi|126663019|ref|ZP_01734017.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
 gi|126624677|gb|EAZ95367.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
          Length = 1512

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 70/198 (35%), Gaps = 30/198 (15%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G   +            R  Q A    D     I   + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPRSWSAPITDTDNWPRCIQIAWQLHDEMGNLI-EHQDYLVKPEGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + AL  G++ +E   + +   S   T  I   N+ FD       F+R  
Sbjct: 61  -DAERIHGISTELALEQGILLSEVLEKFNIALSK--TKFIVGQNVGFDVNIMGCEFHRL- 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
                    N  S    + V+      + + ++ P    G   FKL  L           
Sbjct: 117 ---------NFGSDLSKMPVLDTCTEVTANLLKLPGGRGGR--FKLPTLTELHQYLFNQP 165

Query: 171 HVNAHDAKADVYATLALV 188
              AH+A ADV AT    
Sbjct: 166 FAEAHNATADVEATTRCF 183


>gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 234

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 56/218 (25%), Gaps = 27/218 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G   A   R  + A V V            +      D   D  A  + GIT
Sbjct: 4   IFLDTETTGLYPAQGHRIIEIAAVEV-INRRITSQH--YHVYLNPDREIDAGAQEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+       F       I   +N  FD  +      R            
Sbjct: 61  LEFLQDKPR-FADVVGEFLDFVQDSELII---HNAPFDVGFLNAELGRIEKPGIESVASG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + + +     +               L  L    GI++     H A  D  
Sbjct: 117 ---IIDTLKMAKEMRPGQRN--------------NLDALCRHFGIDNSKRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
               +   +   +  L   + D    N     + IQ +
Sbjct: 160 LLADVYLAMTRGQESLIIDMLDTPVHNDDNDALQIQAI 197


>gi|87198139|ref|YP_495396.1| DNA polymerase III, epsilon subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133820|gb|ABD24562.1| DNA polymerase III, epsilon subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 230

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 30/191 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    +++D ET G D    DR  +   +     + ++ +  VF C    +     EA  
Sbjct: 1   MMRE-IVFDTETTGLDPRSGDRLVEIGCI---EMFNRVPTGAVFHCYFNPERDMPAEAEA 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + G++           AE +  +  F +      +  +N  FD  +  N       +   
Sbjct: 57  VHGLSIAFLSDKPK-FAEKADDLLAFIADS---PMVAHNAGFDFGFINNELELCGREPVS 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177
                 +   D + + R  +  +                 L  L    GI+  H   H A
Sbjct: 113 R-----DRMVDTVAIARRKHPGA--------------KLSLDALCSRYGIDRSHRTKHGA 153

Query: 178 KADVYATLALV 188
             D      L 
Sbjct: 154 LLDAELLAQLY 164


>gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 719

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 52/185 (28%), Gaps = 27/185 (14%)

Query: 5   FVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + ++D ET G D A  D   Q    R+      + S E F              + + GI
Sbjct: 529 YTVFDTETTGLDPAGGDEILQIGATRI-VNGRLLAS-ECFDQLVDPQRSIPEAGIAVHGI 586

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+          +     H F    +T ++G+N      + +                 
Sbjct: 587 RPEMVRGKP-TLPQVLPAFHAF--AADTVLVGHNVAFDMRFLTLKENASG---------- 633

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +R         +       G  S  L+ +A   GI     H A  D  A
Sbjct: 634 -----------VRFDQPVLDTLLLAAIVHPGEDSHGLEAMAARLGIAVSGRHTALGDALA 682

Query: 184 TLALV 188
           T  + 
Sbjct: 683 TAEIF 687


>gi|56416800|ref|YP_153874.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St.
           Maries]
 gi|222475164|ref|YP_002563580.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Florida]
 gi|254995002|ref|ZP_05277192.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Mississippi]
 gi|255003148|ref|ZP_05278112.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004274|ref|ZP_05279075.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Virginia]
 gi|56388032|gb|AAV86619.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St.
           Maries]
 gi|222419301|gb|ACM49324.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str.
           Florida]
          Length = 232

 Score = 86.4 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 50/186 (26%), Gaps = 30/186 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D A  DR  +   V +   +         +  P  D      A  I GIT
Sbjct: 6   IVLDTETTGLDAASGDRIIEIGCVEL-VDFVMTGQVFHKYINPERDIPI--AATKIHGIT 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE + +   F       ++  +N  FD  +      R            
Sbjct: 63  TDMVKNMPK-FAEMADQFLNFVQDS---VLVIHNAGFDLKFIETEMERIGKTKLYN---- 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L+V R  +   P                L  L     I   +   H A  D  
Sbjct: 115 --PVVDTLEVARRKFPGMPA--------------SLDALCKRFDISTSSRRFHGALKDAT 158

Query: 183 ATLALV 188
               + 
Sbjct: 159 LLARVY 164


>gi|187479401|ref|YP_787426.1| DNA polymerase III subunit epsilon [Bordetella avium 197N]
 gi|115423988|emb|CAJ50541.1| DNA polymerase III, epsilon chain [Bordetella avium 197N]
          Length = 243

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 50/194 (25%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I+D ET G D A   R  +   V +             +     D   DPEA+ + G+T
Sbjct: 4   IIFDTETTGLDPAQGHRIVEIGCVEL-VNRMVTGRNLHLY--LNPDRDSDPEALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       + +    QF        +  +N  FD  +      +            
Sbjct: 61  TAFLSDKPR-FGDIAEAFIQFIEGAE---LIAHNASFDVKFFNAELQKVGRK-------- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                     +    A   D +             L  L    GI   H   H A  D  
Sbjct: 109 ---------TLDNYCASVTDSLAHARTLFPGKRNSLDALCDRYGISNAHRTLHGALLDSQ 159

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 160 LLAEVWLAMTRGQD 173


>gi|91215241|ref|ZP_01252213.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755]
 gi|91186846|gb|EAS73217.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755]
          Length = 256

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 27/220 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G +++ DR  + + ++V     K    E +  K         E   I
Sbjct: 5   LTRPICFFDLETTGINISKDRIVEISILKVFENNNK----ESYTWKVNPGIPIPKETTAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +  + +     E + +I+         + GYN+ RFD         R   D    
Sbjct: 61  HGISDEDVVNEPK-FDELAPKINAMIK--GCDLGGYNSNRFDIPLLAEEMLRTGID---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                       D+ +              +     ++K          +  +AH A+AD
Sbjct: 114 -----------FDLKKINAVDVQTIFHKKEKRTLEAAYKF-----YCDKDLTDAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
             AT  ++    ++ P L          +  +K  D+   
Sbjct: 158 TNATYEVLKSQLDRYPDLENDTKWLSTFSAHKKFADLAGF 197


>gi|332299738|ref|YP_004441659.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176801|gb|AEE12491.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 255

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 66/203 (32%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V++D E  G D+  DR  +   +++    E+I    V   +   +     E+  I GIT
Sbjct: 9   LVVFDIEATGLDITNDRIIELTILKLMPDGERI----VRTRRFNPEMPIPAESTAIHGIT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +            ++ + +        + GYN+ RFD       F R   +    S  +
Sbjct: 65  DEDVRDCP-PFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQH 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+  +                            +      EH+ AH A+AD  AT
Sbjct: 122 ----IDVQTIFH----------------KMEPRTLEGAVRFYCHREHIGAHGAEADTIAT 161

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
           L ++    +K      +     +
Sbjct: 162 LDVLLAQLDKYGDALPHSVKELS 184


>gi|332306913|ref|YP_004434764.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174242|gb|AEE23496.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 251

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 12/194 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D+ET G +   D       V +  Q  +    + +  KP  D     ++V I GIT
Sbjct: 60  LVALDFETTGLNPKTDSIVSIGLVAMTTQRIRCAQAQHWIIKP--DTELKSKSVVIHGIT 117

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                        F+R + +        ++  ++   +  +  +   +   +        
Sbjct: 118 HSDVADAPT----FNRVLDELLEHLQGKVVVAHHKDIESRFLNSAMKQYIGEEIV----- 168

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + +                      S +L D      + +   H+A  D  A 
Sbjct: 169 -FPCIDTMSLEARFSRTFKRTFLRSLLGQKTPSIRLTDCRSRYHLPYYRQHNALTDATAC 227

Query: 185 LALVWLIREKKPKL 198
             L+          
Sbjct: 228 AELLQAQIATHYSD 241


>gi|317490808|ref|ZP_07949244.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920355|gb|EFV41678.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 244

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 68/240 (28%), Gaps = 34/240 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAYGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+    L      A+ +    +F        +  +N  FD  +    F +   D  + 
Sbjct: 66  HGISDDFLLDKP-TFADIADEFLEFIRGAE---LVIHNAPFDIGFMDYEFRKLNRDIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLVMARRLFPG--------------KRNSLDALCNRYEIDNTKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKN----QLRKLIDIQNMTPLVHVSGMFGASR 234
            D      +   +   +  L   +     K     +++K++       +V  S    A  
Sbjct: 166 LDSQILADVYLTMTGGQTSLTFSMESEGEKPRPTGEVQKIVRKMQALKVVRASAEELAEH 225


>gi|325285402|ref|YP_004261192.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM
           7489]
 gi|324320856|gb|ADY28321.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM
           7489]
          Length = 258

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 71/221 (32%), Gaps = 27/221 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G +VA DR  + + ++V     K    E        +     E V +
Sbjct: 5   LTRPICFFDLETTGINVAKDRVVEISILKVYPNGNK----ESKTWLVNPEMHIPDEVVAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +K   +    A+ S+ I+      +  + GYN+ RFD         R   D    
Sbjct: 61  HGISNEKVANEP-TFAQLSKEIYAMIKDCD--LGGYNSDRFDIPLLAEEMLRAGVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +D+ + +                                  E  NAH A AD
Sbjct: 114 --------FDMKNTV--------SVDVQTIFFKMEKRTLEAAYKFYCNKELTNAHSAAAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
             AT  ++    ++ P+L   +         +K  D     
Sbjct: 158 TNATFEVLKSQLDRYPELENDIKKLSEFTTRKKFADFAGFI 198


>gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191]
 gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191]
          Length = 201

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 29/189 (15%)

Query: 4   HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F   D ET G       R  + A +        I     +        +   E + I G
Sbjct: 12  KFAFLDTETTGLSPYDGARLCEIAVI---TNGALIAK-SEYGTIINPRCVISQEVINIHG 67

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT + A +    E + +  +    +     +I  +N  FD  +    F R          
Sbjct: 68  ITNEMAAQAPYFE-DIAPLLIGLLTDS---VIVCHNADFDIPFLAAEFARCG-------- 115

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +R       D +++  ++       L  +    G+ +   H A AD  
Sbjct: 116 ------------LRMPQTVILDTLKFARKNGNFKKNNLGFIVSELGLSNEGWHRAMADAK 163

Query: 183 ATLALVWLI 191
            T  + +  
Sbjct: 164 MTEKVFYHF 172


>gi|327313528|ref|YP_004328965.1| exonuclease [Prevotella denticola F0289]
 gi|326944167|gb|AEA20052.1| exonuclease [Prevotella denticola F0289]
          Length = 284

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 7/159 (4%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   V++D ET G D+  DR  Q + ++V    ++ E   +F      +     E   +
Sbjct: 5   LTKPLVVFDLETTGLDLVNDRIIQISFIKVLPDGKE-ERENIF---INPEKPIPTEVTQL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ +          + ++ +   F+       G+N+ RFD       F R   D    
Sbjct: 61  TGISHKDVADAP-TFRQKAKELADRFA--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDFS 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                +++     + R   A +         ++   + K
Sbjct: 118 KSRLIDAQNIYHKMERRNLAAAYKFYCGRKMEEDFEAHK 156


>gi|313887234|ref|ZP_07820929.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923325|gb|EFR34139.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I]
          Length = 255

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V++D E  G D+  DR  +   +++    E+I    V   +   +     E+  I GIT
Sbjct: 9   LVVFDIEATGLDITNDRIIELTILKLMPDGERI----VRTRRFNPEMPIPAESTAIHGIT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +            ++ + +        + GYN+ RFD       F R   +    S  +
Sbjct: 65  DEDVRDCP-PFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQH 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+  +                            +      EH+ AH A+AD  AT
Sbjct: 122 ----IDVQTIFH----------------KMEPRTLEGAVRFYCHREHIGAHGAEADTIAT 161

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
           L ++    EK      +     +
Sbjct: 162 LDVLLAQLEKYGDALPHSVKELS 184


>gi|302533422|ref|ZP_07285764.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302442317|gb|EFL14133.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 241

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 57/190 (30%), Gaps = 18/190 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  +                       P A  + G+T + 
Sbjct: 12  FDTETTGVDVEQDRIVSAALVVQECAG---GRVRSTRWLVNPGVPVPPGATEVHGLTDEH 68

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             R+G   A     I +           ++  N   FD         R+   +     DN
Sbjct: 69  LQRNGRWPAPVVEEIARALGEQRMAGRPVVVMNAP-FDLTLLDRELRRHRASTLARYLDN 127

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                      R +    P  +             L DL    GIE   AHDA AD  A 
Sbjct: 128 -----------RPLTVLDPRVLDKHLDRYRKGRRTLTDLCAHYGIELEGAHDASADAQAA 176

Query: 185 LALVWLIREK 194
           L +V  +  +
Sbjct: 177 LEVVRAVGRR 186


>gi|330969506|gb|EGH69572.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 203

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +  Q   +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +  F     +  +  +N  FD  +      R        
Sbjct: 57  TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR-------I 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                 S    L + R                 GA + KL  L       +   AH A A
Sbjct: 106 QRTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +  +  +  
Sbjct: 153 DAEMAANLTAHLTNELRQTH 172


>gi|269101978|ref|ZP_06154675.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161876|gb|EEZ40372.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 241

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 59/202 (29%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
              +++D ET G +         R  +   V +    +       F      D   DPEA
Sbjct: 6   ERIIVFDTETTGMNMSGPHYEGHRIIEIGAVEI-INRKLTG--NTFHVYIKPDRAIDPEA 62

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + + GIT +  +      AE  +    F        +  +N  FD  +    F +     
Sbjct: 63  IEVHGITDEFLVGKP-TYAEIHQEFMDFIQGAE---LVAHNAPFDIGFMDYEFRKLGLKD 118

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAH 175
            +          D LD+ + ++                    L  L    GI+  H   H
Sbjct: 119 LKTDEM--CKVTDTLDMAKRLFPG--------------KRNNLDILCSRYGIDNSHRTLH 162

Query: 176 DAKADVYATLALVWLIREKKPK 197
            A  D      +  ++   +  
Sbjct: 163 GALLDAEILADVYLMMTGGQTS 184


>gi|306835084|ref|ZP_07468126.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC
           49726]
 gi|304569032|gb|EFM44555.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC
           49726]
          Length = 231

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 14/111 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---IT 61
           F + D ET G +   DR  + A VR D  +  ++S             PD +A+    I 
Sbjct: 31  FAVIDTETTGVNKRYDRIIELAAVRADAHFNPVDSWHTLLS-------PDGKAIKNSHIH 83

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           GIT             FS     F S  +   +  +N  FD         R
Sbjct: 84  GITNDMVATAPT----FSDVYGDFTSYIDGMQLLAHNAPFDSKMIIAEVDR 130


>gi|288932698|ref|YP_003436758.1| DNA polymerase III subunit epsilon [Ferroglobus placidus DSM 10642]
 gi|288894946|gb|ADC66483.1| DNA polymerase III, epsilon subunit [Ferroglobus placidus DSM
           10642]
          Length = 200

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 28/219 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F + D ET G +V  D     A + +D   + +      + +         ++V   G
Sbjct: 4   EKFAVVDVETTGLNVKKDEIISIAIIPMD-GLKIL--FSEAYYRILKPRRFKIDSVKYHG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITP+          E    I +  +     II   +I  D  + +  F            
Sbjct: 61  ITPRMVEEAP-TFCEVKEEILEKLNER---IIVGYSINLDIEFLKKSFKEC-------EV 109

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D+ DV + +     D ++            L+DLA   G++    H A +D Y
Sbjct: 110 VFECKYVDIADVEKLVGRLFGDYMK---------DVTLEDLAKKYGVDVAYRHSALSDAY 160

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            T  +  +   +  K     Y  R    + + I  ++  
Sbjct: 161 ITAQIFQMQLLRLLK-----YGLRKFEDVLRAIKKEDFY 194


>gi|255535519|ref|YP_003095890.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
           3519-10]
 gi|255341715|gb|ACU07828.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
           3519-10]
          Length = 1567

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 25/200 (12%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    DR    +E+ + +  KP    +P 
Sbjct: 18  YLIFDTETTGLPKNYNAPLTDSDNWPRMVQIAWQLHDRDGNLLENQD-YIIKPDGYDIPF 76

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             A  I GI+ + A  +G    E      +        ++  +NI FD   +   ++R  
Sbjct: 77  -NASRIHGISTKMAHAEGRDLREVLIEFGEVLKKAE--VVAGHNIDFDYKIAGAEYHRQS 133

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVN 173
            D+            D +++                ++    S KL++L           
Sbjct: 134 LDNILEK----IPSADTMELGTDYCKLGG------GKNGRYKSPKLEELYTTLFNERFDE 183

Query: 174 AHDAKADVYATLALVWLIRE 193
           AH+A ADV AT  + + +  
Sbjct: 184 AHNAAADVNATAQIFFEMMR 203


>gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
 gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379]
 gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 641

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 28/182 (15%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     DR    A + +    E+                P P  V + G+T ++
Sbjct: 23  VDVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTL---LDPGCDPGP--VEVHGLTAER 77

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                    + + RI          ++  +N +FD  +  + F R         W   + 
Sbjct: 78  LRGAP-TFDQVAGRIGAMLQDR---VLVAHNAQFDYDFLAHEFAR------ARMWLPVSQ 127

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
           R   L + R +             D      KL  LA    +    AHDA  D      +
Sbjct: 128 RLCTLALNRQV-------------DPPTDDMKLGTLATHYDVPQQRAHDALDDTRVLAGI 174

Query: 188 VW 189
           + 
Sbjct: 175 LR 176


>gi|71726088|gb|AAZ39211.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
          Length = 238

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +  GV ++    ++ +   F      +   +  A+ + G+T
Sbjct: 4   IVLDTETTGLNPRTGDRILEIGGVELN---NRMLTGNNFHQYINPERDSEEGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE +     F +     I   +N  FD  +    F R            
Sbjct: 61  TEFLSDKPK-FAEIAEEFRAFIAGAELII---HNAPFDIGFLNAEFKRLNLPPVHEQV-- 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
            +   D L   + ++                    L  L    G+   H   H A  D  
Sbjct: 115 -HGVIDTLVQAKEMHPG--------------KRNSLDALCDRYGVSNAHRKLHGALLDSE 159

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 160 LLADVYLAMTRGQNS 174


>gi|257792837|ref|YP_003183443.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
 gi|257476734|gb|ACV57054.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
          Length = 966

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 65/189 (34%), Gaps = 30/189 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ V+ D ET G     D   Q A  R+  Q E +E    F            +   +T 
Sbjct: 8   HNVVVLDTETTGFSFNHDELTQIAAARM-EQGEIVEWFITF---VNPGKPIPEDVAHLTD 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  +      +  A+   ++ +F        +  +N  FD  ++    + + Y     +W
Sbjct: 64  IHDRDVADAPLP-ADALAKLVEFIGDAK---VVAHNAEFDRTFTTR--HPSGYPLLENTW 117

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D LD+ R                    S +L DL  A G      H A ADV 
Sbjct: 118 ------IDSLDLARIA-------------LPRMKSHRLLDLVRAFGAPLST-HRADADVE 157

Query: 183 ATLALVWLI 191
           AT A+  ++
Sbjct: 158 ATCAIFRIL 166


>gi|153008625|ref|YP_001369840.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560513|gb|ABS14011.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
           ATCC 49188]
          Length = 332

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 66/241 (27%), Gaps = 37/241 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            +   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPADITRITGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +   +    I +        II  +N  FD  +                  
Sbjct: 134 TDDMVKGQTIPREKLDALIAE------ADIIIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 +   +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 170 -----LERFSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 223

Query: 184 TLALVWLIREKKPKLFEYLY-DYRNKNQLRKLIDIQNMTPLVHVSGMFGA----SRSNTA 238
            LA++           E L    R + ++        M   +   G   +     R  + 
Sbjct: 224 LLAVLKEQSGDTTPFAELLKASQRARMRVYAENSPFEMKDHLKTRGYRWSDGTDGRPKSW 283

Query: 239 L 239
            
Sbjct: 284 W 284


>gi|29346773|ref|NP_810276.1| DNA Pol III epsilon chain [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338670|gb|AAO76470.1| DNA Pol III Epsilon Chain [Bacteroides thetaiotaomicron VPI-5482]
          Length = 277

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 79/256 (30%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  +   ++V     +    E    +   +      +  +
Sbjct: 23  LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPEASSAV 78

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E ++ + +        + G+N+ RFD       F R        
Sbjct: 79  HGIYDADVADCP-TFKEVAKNVARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------ 129

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +D+      F    + +   +    S   +           +AH A+AD
Sbjct: 130 -----------VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCEK---SLEDAHTAEAD 175

Query: 181 VYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
             AT  ++    ++ P    +  +     +  + +     M    +   +F   +     
Sbjct: 176 TRATYEVLKAQLDRYPDLQNDIAFLAEYSSFTKNVDFAGRMVYDDNGVEVFNFGKYKGMS 235

Query: 240 IAPVA-WHPRYKDSVI 254
           +A V    P Y   ++
Sbjct: 236 VAEVLKKDPGYYSWIL 251


>gi|257065507|ref|YP_003145179.1| exonuclease, DNA polymerase III, epsilon subunit family [Slackia
           heliotrinireducens DSM 20476]
 gi|256793160|gb|ACV23830.1| exonuclease, DNA polymerase III, epsilon subunit family [Slackia
           heliotrinireducens DSM 20476]
          Length = 986

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 60/202 (29%), Gaps = 30/202 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + V+ D ET G     D   Q A  R+    E  +    F            E V +T I
Sbjct: 5   NLVVLDTETTGLSYNHDELTQIAAARM-ECGEITDWFVTF---VNPGKPIPDEIVRLTNI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  +     + E    + +F        +  +N  FD ++          +   W   
Sbjct: 61  HDEDVVDAPTPD-EARALLAEFI---GDAYVVAHNADFDKHFCTKSESGECLNRNIW--- 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R                    S +L DL  A        H A ADV A
Sbjct: 114 -----VDSLALARIA-------------LPRMKSHRLIDLVHAFDAPIST-HRADADVEA 154

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
             A+  ++      +   L +Y
Sbjct: 155 LCAVYRILLSAVATMPPDLVEY 176


>gi|328957363|ref|YP_004374749.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Carnobacterium sp. 17-4]
 gi|328673687|gb|AEB29733.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Carnobacterium sp. 17-4]
          Length = 940

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 68/194 (35%), Gaps = 28/194 (14%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + + + D ET G +V   DR  QF  V ++   + +                  +   +
Sbjct: 7   KDTYAVVDIETTGGNVTSGDRMIQFGCVLIEDD-KIVHRFATT---VNPLTSIPKQIEHL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TG++ +        E + +  I+        CII  +NI+FD  +      R    +   
Sbjct: 63  TGLSNKSVALAPYFE-DVAATIYNLLED---CIIVAHNIQFDYIFLSGELQRCGMPAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +                   +S++L DL     IEH N H A +D
Sbjct: 117 ----KNKGIDTVELAQI-------------LLPTESSYRLNDLVSKFNIEHTNPHQADSD 159

Query: 181 VYATLALVWLIREK 194
              T  L   ++ K
Sbjct: 160 AAVTAELFLELKNK 173


>gi|332686697|ref|YP_004456471.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius
           ATCC 35311]
 gi|332370706|dbj|BAK21662.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius
           ATCC 35311]
          Length = 924

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 27/200 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D  +DR  QF  V +    E +            + +   +   +TGI+
Sbjct: 7   YAVVDLETTGVDPTVDRIIQFGCVLI-ENGEIV---SHIGTDVNPNRIIPKQIQHLTGIS 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +    E + +  I    +     I   +N+ FD  +  +   R            
Sbjct: 63  NARVQKAPYFE-DIAIMIFNLLTD---TIFVAHNVHFDYRFLSHELVRCGLPPLT----- 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +D +     F               SF+L DL+ + G+ H + H A +D   T
Sbjct: 114 ----IDAIDTVELAQIFL----------PTERSFRLSDLSSSLGLLHNHPHQADSDAQVT 159

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L+ +I +K   L     +
Sbjct: 160 AELLLIIEQKMYTLPLITME 179


>gi|262194125|ref|YP_003265334.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077472|gb|ACY13441.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 56/190 (29%), Gaps = 19/190 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V  D ET G D       + A +RV  +  + E   V   +P      DPEA+ + 
Sbjct: 1   MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVN 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G   +      V   +    +          ++  +N+ FD  +    +    +      
Sbjct: 61  GYRRRAWADA-VSLGDAMAELAPMLE---GAVLAGHNVAFDRRFLEAAWDYVGHRP---- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N     LD     +     G           S  L  +    G+     H A  DV
Sbjct: 113 ---ENLDHHALDTAALAFPLLMAG--------EIDSLSLTPVCAHLGVLRGEEHWAFDDV 161

Query: 182 YATLALVWLI 191
            A L +   +
Sbjct: 162 RACLGVARRL 171


>gi|86142317|ref|ZP_01060827.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella
           blandensis MED217]
 gi|85831069|gb|EAQ49526.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella
           blandensis MED217]
          Length = 257

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 73/255 (28%), Gaps = 28/255 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G +VA DR  + + ++V    +  E    +           PE   +
Sbjct: 5   LTRPICFFDLETTGINVAKDRIVEISVLKVLPNGK--EEKHTWLV--NPTIPIPPETTAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E +  IH      +  + G+N+ RFD         R   D    
Sbjct: 61  HGIKDEDVADKP-TFKELANEIHNLIKDSD--LAGFNSNRFDIPLLAEEMLRAEVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                       D+                +   + ++K             +AH A+AD
Sbjct: 114 -----------FDMKNRNAIDVQTIFHKMEQRTLSAAYKF-----YCDQTLEDAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239
             AT  ++    ++   L   +      +  +K  D              F   +     
Sbjct: 158 TIATYEVLKSQLDRYEDLENNMKSLAEFSARKKFADFAGFIAFNKDGEEVFSFGKHKGKK 217

Query: 240 IAPVAWHPRYKDSVI 254
           +  V  +       I
Sbjct: 218 VEDVLENEPGYFGWI 232


>gi|325267110|ref|ZP_08133779.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
           denitrificans ATCC 33394]
 gi|324981463|gb|EGC17106.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
           denitrificans ATCC 33394]
          Length = 245

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 33/202 (16%)

Query: 1   MTNHFVIYDYETFGRDVAL----DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDP 55
           M    +I D ET G + +     DR  +FAG+  V+RQ+    +          +     
Sbjct: 1   MNQRQIILDTETTGFEHSRADNPDRMIEFAGLEMVNRQF----TQNDLHLYIHPERDIPA 56

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           EA  + GIT        V  A+ +++I  F       I   +N +FD  +    F R   
Sbjct: 57  EATAVHGITLDDLADKPV-FADVAQQIFDFLKGAELII---HNAKFDVGFLNAEFARVGL 112

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174
            +     D+  +  D L++ R  Y    +               L  L    G++     
Sbjct: 113 PNI----DSVCTVVDTLEMARKRYPGQKN--------------SLDALCTRLGVDRSRRV 154

Query: 175 -HDAKADVYATLALVWLIREKK 195
            H A  D      +   +   +
Sbjct: 155 LHGALIDCELLGGVYLAMTRGQ 176


>gi|213962149|ref|ZP_03390413.1| exonuclease [Capnocytophaga sputigena Capno]
 gi|213955155|gb|EEB66473.1| exonuclease [Capnocytophaga sputigena Capno]
          Length = 258

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 79/257 (30%), Gaps = 29/257 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++     +D ET G D+  DR  + + ++V     K    E               A  +
Sbjct: 5   LSKPICFFDLETTGIDITKDRIVEISILKVYPNGNK----ESKTWLVNPTIPIPKAASDV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT ++   +     E +++IH      +  + GYN+ RFD         R   D    
Sbjct: 61  HGITDERVACEP-TFKELAKQIHNMIKDSD--LAGYNSDRFDIPLLAEEMLRAEVDFDL- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+  +   +   +                         G + ++AH A AD
Sbjct: 117 ---GNRVSVDVQTIFHKMEQRTLS----------------AAYKFYCGKDLIDAHTASAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV-HVSGMFGASRSNTAL 239
             AT  ++    ++   L   +         +++ D             +F   +     
Sbjct: 158 TNATYEILKAQLDRYDSLENNIKKLSEFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKR 217

Query: 240 IAPVA-WHPRYKDSVIG 255
           +  +    P Y   ++G
Sbjct: 218 VEDIFDEEPGYFGWLLG 234


>gi|217973787|ref|YP_002358538.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|217498922|gb|ACK47115.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
          Length = 300

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 56/198 (28%), Gaps = 28/198 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D ET G    +D+  + A ++ D          VF      +     +   ITGIT
Sbjct: 19  FIALDAETTGLSADVDKIIEIAAIKFDLLSN---DHPVFEALINPNVKVSRKITSITGIT 75

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       + ++ + QF        I   N +FD  +    F              
Sbjct: 76  NAMLADQ-ETFTDIAQDLKQFI---GDLPIVAYNAKFDKGFLDTEFANVGI--------- 122

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                        +       +          ++KL  +A    I    AH AKAD  A 
Sbjct: 123 ------------ILNNHYHCALNLAKAAFNLPNYKLATVAEHCSIPLNEAHRAKADAVAA 170

Query: 185 LALVWLIREKKPKLFEYL 202
             +          + E +
Sbjct: 171 GRVFMCAAVTLGHINEII 188


>gi|330952959|gb|EGH53219.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae Cit 7]
          Length = 203

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +  Q   +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +  F     +  +  +N  FD  +      R        
Sbjct: 57  TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR-------I 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                 S    L + R                 GA + KL  L       +   AH A A
Sbjct: 106 QRTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +  +  +  
Sbjct: 153 DAEMAANLTAYLTNELRQTH 172


>gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 466

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 61/205 (29%), Gaps = 28/205 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G   A     + A    + + E I+  +        +         +TGIT
Sbjct: 11  YAIVDIETNGSAAAHGGITEIAIFLHNGK-EIIDEYQTL---VNPEKPIPFHIQTLTGIT 66

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+  +       E ++ ++ +       I   +N+ FD  +    F     D        
Sbjct: 67  PEMLVDAPR-FDEVAKDVYSYLEK---AIFVAHNVSFDFSFLHKQFLDVGIDWKPIK--- 119

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G TS+ L  L     I   + H A  D  AT
Sbjct: 120 -------LCTVRLARKIF----------PGYTSYSLGSLCKNLNIPLHDRHRAAGDAKAT 162

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
             L   + +   + +       N  
Sbjct: 163 TILFEQLLQNDQERWIEKMSKTNAK 187


>gi|86145733|ref|ZP_01064062.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222]
 gi|218676919|ref|YP_002395738.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32]
 gi|85836432|gb|EAQ54561.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222]
 gi|218325187|emb|CAV27099.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32]
          Length = 207

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 30/199 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  ++ D+ET G    + DR  +   V++    E +++ +         +         T
Sbjct: 7   DSVIVLDFETTGLSPNMGDRAIEIGAVKL-VNGEVVDTFQQLM---NPGFRVSGFIESYT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +         +E       F        +  +N  FD  +          D     
Sbjct: 63  GISNRMLSTA-ASCSEVMDEFANFIQ---GSQLVAHNASFDKRFLDAELDFIGRD----- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180
                              F+   +        A + KL DL    N       H A AD
Sbjct: 114 ---------------YTGKFACSMLIARRLIQDAPTHKLGDLVRFKNIDNDGTFHRALAD 158

Query: 181 VYATLALVWLIREKKPKLF 199
              T  L  L+ ++     
Sbjct: 159 SEMTARLWLLMIDELQSDH 177


>gi|315650299|ref|ZP_07903371.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487410|gb|EFU77720.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 236

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 17/196 (8%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  + +D ET G      D+  + A + +D+   + E     F K         +   +T
Sbjct: 10  NQIIFFDTETTGFHPERLDQIIELAAISIDKTGRQQE--MDEFIKLFRVQELPQQITELT 67

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+       G  E     +           ++  +N +FD  +     +RN        
Sbjct: 68  GISSDTLSAQGKDEFAVLNKFIDMIQGNGKTLLIAHNAQFDLKFMAYAIHRN----KNKE 123

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W    +  D LD +        D  Q+P R + A       +      +  N+H A  D 
Sbjct: 124 WMQVFNDCDYLDTL----TVYKDRRQYPHRLESAI------VQYHLINKVKNSHRAIDDC 173

Query: 182 YATLALVWLIREKKPK 197
            A + +   + E++  
Sbjct: 174 RALIEVTRCMYEERED 189


>gi|224417820|ref|ZP_03655826.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|253827160|ref|ZP_04870045.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|313141361|ref|ZP_07803554.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|253510566|gb|EES89225.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|313130392|gb|EFR48009.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
          Length = 247

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 56/189 (29%), Gaps = 31/189 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFIT 61
             F I D ET G +  + +P +   +   +  +  ES   F FC              +T
Sbjct: 69  ERFCIVDIETNGHNPFVHQPIEIGAIVY-QGGKICESFHSFVFC-----EEIPEYITKLT 122

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT     +   +     + +  F    + C+   +N+ FD  +  N  Y   +      
Sbjct: 123 GITSPMLEKAPKIH----QVLESFKLFLSDCVFVAHNVNFDYQFLSNALYHYGFGYLYNP 178

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                                   I+   +   +  + L+ L    GI H   H A  D 
Sbjct: 179 --------------------RLCTIKLAQKTFTSPRYSLEFLNEFLGIRHSPLHRALEDS 218

Query: 182 YATLALVWL 190
                +   
Sbjct: 219 KVASEVFKK 227


>gi|297156451|gb|ADI06163.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 254

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 52/175 (29%), Gaps = 16/175 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A V V R  E +   E              +AV + GIT + 
Sbjct: 11  FDLETTGTDPGEARIVTAAVVEV-RGGEPVGRREWLA---DPGVTIPDDAVAVHGITTEW 66

Query: 68  ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G    E +  I             +   N  FD         R+   S       G
Sbjct: 67  AAAEGRPSREVADEIADVLVAHWQAGAPVVAYNAAFDLSLLAAELRRHGLPSLG-ERLGG 125

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                ++D      A                   L+ +    G+ H  AHDA AD
Sbjct: 126 AETGPVVDPYTIDRAV---------DRYRKGKRTLEAVCGEYGVVHERAHDAGAD 171


>gi|296110415|ref|YP_003620796.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154]
 gi|295831946|gb|ADG39827.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154]
          Length = 801

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 72/203 (35%), Gaps = 28/203 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             FV+ D ET G+ VA   R  Q     + +Q + ++  E F        L       +T
Sbjct: 5   ETFVVVDLETTGQSVAKGGRIIQIGMTFI-KQRKIVDHFESF---VNPGQLIARNIQQLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I+ ++       E E +  +          +I  +NI FD  Y  + F R  +      
Sbjct: 61  HISQKEVKNAPYFE-EIAPLLQNLLKD---AVIIAHNINFDYPYLNDEFVRTGF------ 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               ++  D + + +                  A  ++L DL     I   NAH A AD 
Sbjct: 111 QKLNSAAIDTVQLAQI-------------LLPTAPGYRLLDLTTYLDITLNNAHRANADA 157

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
           +AT  L   + ++  +L   +  
Sbjct: 158 HATALLFLKLWQRAEQLPRVVLQ 180


>gi|281419997|ref|ZP_06250996.1| exonuclease [Prevotella copri DSM 18205]
 gi|281405797|gb|EFB36477.1| exonuclease [Prevotella copri DSM 18205]
          Length = 287

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 7/138 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   +++D ET G D+  DR  Q + ++V     + +   ++            E V +
Sbjct: 5   LTKPLIVFDLETTGLDMIKDRIIQISYIKVMPDGTE-DRKNLY---VNPCMEIPAEVVAL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ +          + +  + + F+       GYN+  FD       F R   D    
Sbjct: 61  TGISNEDVKDAP-TFKQLAATLEKEFT--GCDFAGYNSNHFDVPMLAEEFLRAGIDFDFN 117

Query: 121 SWDNGNSRWDLLDVMRAI 138
                +++   + + R  
Sbjct: 118 KCRLIDAQTIFMKMERRN 135


>gi|119471121|ref|ZP_01613653.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7]
 gi|119445777|gb|EAW27059.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7]
          Length = 745

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 28/189 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     +R  +   V+V +  + I++                    +TGI+
Sbjct: 579 YSVVDIETTGGLKGGNRVTEIGIVKV-QHGKVIDTWTTL---INPQRHIPSFITKLTGIS 634

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V  A+ ++ +    +     I   +N+ FD  + +       +         
Sbjct: 635 DGMVYNAPV-FADIAQPLLDKLA---GSIFVAHNVNFDYGFIKKECEVAGH--------- 681

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +   +  +                  G  S+ L +L+    +   + H A AD  AT
Sbjct: 682 -FFKMPKMCTVVESR----------RAFKGLKSYSLGNLSAHFNLNLTSHHRALADATAT 730

Query: 185 LALVWLIRE 193
             L+ LI+ 
Sbjct: 731 AELLLLIQN 739


>gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
           c2]
 gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
           c2]
          Length = 481

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 43/180 (23%), Gaps = 28/180 (15%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     DR  +   V +        +   + C              +TGIT + 
Sbjct: 24  LDIETTGSHTERDRITEIGIVTLHPDG----TQSNWSCLIHPGCAIPARITTLTGITNEM 79

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                V    F+ R           I+  +N RFD  + +  F R               
Sbjct: 80  VADQPV----FAHRAQALLERLENHIVIAHNARFDLGFLKQAFRREG------------- 122

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
                  +R   +                   L  +    G+     H A  D       
Sbjct: 123 -------IRFNPSVLCSVKLSRQMFPAERRHNLDSVMQRMGLSCAARHRALGDAAVVADF 175


>gi|94502173|ref|ZP_01308671.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
 gi|94425698|gb|EAT10708.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
          Length = 237

 Score = 86.0 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 27/193 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G      R  +   V +    +        +         DPEA+ + GIT 
Sbjct: 4   VVLDTETTGIG-DGHRIIEIGCVEL-VGRKLTGRHYHQY--INPQREVDPEAMEVHGITD 59

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +      V    F++  ++F    N   +  +N  FD  +    F +             
Sbjct: 60  EFLADKPV----FAQVANEFLDFINGAELVIHNAPFDVGFMDMEFAKLSNFPKTAEV--- 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
               D L + R +Y    +               L  L    GI+  H   H A  D   
Sbjct: 113 CGVLDTLTLARKMYPGQRN--------------SLDALCRRLGIDNSHRELHGALLDSEI 158

Query: 184 TLALVWLIREKKP 196
              +  L+   + 
Sbjct: 159 LADVYLLMTGGQT 171


>gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
 gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1]
          Length = 237

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 54/198 (27%), Gaps = 33/198 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           V+ D ET G D     R  +   V      E I        F      D   + EA  + 
Sbjct: 4   VVLDTETTGIDPKQGHRIIEIGCV------EMIGRKLTNRHFHVYINPDREVEEEAFRVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +          E ++    F       I   +N  FD  +  + F R         
Sbjct: 58  GISNEFLADKPRFH-EIAQEFFDFIKGAELII---HNAPFDIGFMDHEFARIGGYPKTAE 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179
                  +D L   R  +    +               L  L    GI+  H   H A  
Sbjct: 114 V---CGVFDSLVYARKKHPGQKN--------------NLDILCRRYGIDNSHRELHGALL 156

Query: 180 DVYATLALVWLIREKKPK 197
           D      +  L+   +  
Sbjct: 157 DSEILADVYLLMTGGQTS 174


>gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
 gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
          Length = 1259

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 59/205 (28%), Gaps = 35/205 (17%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +++D ET G      R  + A     D       +       P    +P P    +T
Sbjct: 193 PSIIVFDLETTGLSKEKSRIIELAAQSLTDPS----AAFSTL-VNPGRFNIP-PAIKALT 246

Query: 62  GITPQKALRDGVVEAEFSRRIHQFF------SVPNTCI--IGYNNIRFDDYYSRNIFYRN 113
           GIT        V     +    + F      S P   +  + +N  +FD  + +  + R 
Sbjct: 247 GITNSMVSAPDVPSFAMAAEQFEMFIEQVRQSRPGAPVLLVAHNARQFDAAFIQYEYRRL 306

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV- 172
                     +     D L + R +            R DG   F +  L     IE   
Sbjct: 307 G-----RELPSSWRFCDTLPLARQL-----------LRPDGLGKFSMDVLRGHYDIELEG 350

Query: 173 ---NAHDAKADVYATLALVWLIREK 194
                H A  D      ++  + E 
Sbjct: 351 GDVQMHRAGTDARVLADILNKMLEH 375


>gi|262194028|ref|YP_003265237.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077375|gb|ACY13344.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 53/190 (27%), Gaps = 19/190 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V  D ET G D       + A +RV  Q    E   V   +P      DPEA+ + 
Sbjct: 1   MQPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVN 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G   +      V   +    +          ++  +N+ FD  +    +           
Sbjct: 61  GYRRRAWADA-VSLGDAMAELAPMLE---GAVLAGHNVAFDRRFLEVAWDCVG----HRP 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               +   D   +   +                  S  L  +    G+     H A  DV
Sbjct: 113 ETLDHHALDTAALAFPL-----------LMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDV 161

Query: 182 YATLALVWLI 191
            A L +   +
Sbjct: 162 RACLGVARRL 171


>gi|291529581|emb|CBK95167.1| DNA polymerase III, alpha subunit (gram-positive type) [Eubacterium
           rectale M104/1]
          Length = 345

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 19/200 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              V+YD ET G      R   F+ +R       ++  +                  +  
Sbjct: 15  KKIVVYDLETTGFKSKNTRILSFSAIRYQVSEHGMDEIDRRNMFLNPMMTIPAYITAVNH 74

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +K       E E    I  + +  +  + GYNN  FDD     +  R  +  +    
Sbjct: 75  ITNEKVADCP-TEYEAGAEILSYLNSAD-FVSGYNNANFDDGLVNEMARRIGFGKWIPKN 132

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADV 181
           +                       +         +FKL  LA     +     H++  DV
Sbjct: 133 EIDVMI----------------LAKAVLTKQDVPNFKLGTLAEYFHADAGLEFHNSIDDV 176

Query: 182 YATLALVWLIREKKPKLFEY 201
            AT  ++W +  K       
Sbjct: 177 IATSRVLWGLVNKCRTDEHD 196


>gi|332521177|ref|ZP_08397635.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
 gi|332043270|gb|EGI79467.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
          Length = 257

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 31/257 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +      +D ET G +++ DR  + + ++V     K    E        +     E   I
Sbjct: 5   LKKPICFFDLETTGINISKDRVVEISILKVFPNGNK----ESKTWLVNPEMPIPAEVSAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT ++   +    AE ++ I+      +  + G+N+ RFD         R   D    
Sbjct: 61  HGITDERVANEP-TFAELAKEINVMIKDSD--LAGFNSNRFDIPLLAEEMLRANMDFD-- 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              N     D+  +             +   +    S   +     N     NAH A+AD
Sbjct: 116 --MNKRVAIDVQTI-------------FHKMEQRTLSAAYKFYCDKN---LENAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFE---YLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
             AT  ++    ++   L     +L ++ +  +        N          FG  +   
Sbjct: 158 TLATYEVLKAQLDRYEDLENDAKFLAEFSSHKKFADFAGFINYNKEGEECFSFGKHKGKK 217

Query: 238 ALIAPVAWHPRYKDSVI 254
            L   +   P Y   ++
Sbjct: 218 VLDV-LDKEPGYFGWLL 233


>gi|325128513|gb|EGC51390.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis N1568]
          Length = 470

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVIEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRVGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207


>gi|237752604|ref|ZP_04583084.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376093|gb|EEO26184.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 267

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 58/197 (29%), Gaps = 29/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F I D ET G +  +  P +   ++V R  + ++  E F                IT
Sbjct: 68  QETFCIVDIETNGHNPCVHTPIEIGTLKV-RNGKVVDCFESFVFN----AEIPEYITKIT 122

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI  Q            +  + +F       I   +N+ FD  +      +  +      
Sbjct: 123 GINAQMLENAPK----LASVLEKFKLFLGDSIFVAHNVDFDYNFLSQSLEKCGFGYLYNP 178

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                                   I+   R   A  + L  L    GI H N H A  D 
Sbjct: 179 --------------------RLCTIKLAQRVLQAPRYSLGFLNEFLGINHQNLHRALQDS 218

Query: 182 YATLALVWLIREKKPKL 198
              L +  +  +K PK 
Sbjct: 219 KTALEIFKICLKKIPKN 235


>gi|225450649|ref|XP_002282861.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
 gi|225450651|ref|XP_002282855.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 337

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 27/210 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G   A DR  +      D    +  + +       +  +P+P    + GI
Sbjct: 132 TVIVFDTETTGLSRANDRIIEIGLQ--DLGGGENSTFQTLVN--PERIVPNP---HVHGI 184

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117
           T     R  V    +    + Q+      P   I  + +N   FD  +  N F R     
Sbjct: 185 TTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCN--- 241

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
                       D L + R +           +  D      LQ L     I     AH 
Sbjct: 242 --TEVPPNWRFLDTLPLARELIK--------SAGSDLPPGASLQALREYYRIPLVGPAHR 291

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYR 206
             +DVY    ++ ++          L D  
Sbjct: 292 VLSDVYTLSQVLQMLTFNLKVSVANLLDRS 321


>gi|254480788|ref|ZP_05094035.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214039371|gb|EEB80031.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 244

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 26/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +V+   R  +   V +D       +    +  P  +   D  A+ + GIT
Sbjct: 4   IVLDTETTGLEVSQGHRIIEIGCVELD-TRRLTGNHYHQYINPNRE--IDQGAIEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E    R   +F        +  +N  FD  +  +   R   D+ R    +
Sbjct: 61  NEFLKDKPSFE----RVFREFLEFVEGSELVIHNAPFDLGFLNSEIQRLEPDAPRLE--D 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +    +               L  L    G+++     H A  D  
Sbjct: 115 RCKIVDTLVMARGKHPGQRN--------------SLDALCQRYGVDNSQRDLHGALLDSE 160

Query: 183 ATLALVWLIREKKP 196
               +  L+   + 
Sbjct: 161 ILADVYLLMTGGQT 174


>gi|330888790|gb|EGH21451.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
 gi|330987665|gb|EGH85768.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011360|gb|EGH91416.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 203

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 50/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +  Q   +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +  F        +  +N  FD  +      R        
Sbjct: 57  TGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                          +   +F+   +       GA + KL  L     +     AH A A
Sbjct: 108 ---------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +  +     
Sbjct: 153 DAEMAANLTAYLTNELRNTH 172


>gi|330870427|gb|EGH05136.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 203

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 50/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +  Q   +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +  F        +  +N  FD  +      R        
Sbjct: 57  TGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                          +   +F+   +       GA + KL  L     +     AH A A
Sbjct: 108 ---------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +  +     
Sbjct: 153 DAEMAANLTAYLTNELRNTH 172


>gi|77360920|ref|YP_340495.1| hypothetical protein PSHAa1996 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875831|emb|CAI87052.1| conserved protein of unknown function; putative enzyme
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 730

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 28/192 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     ++  +   V+V +  + I++                    +TGI+
Sbjct: 567 YSVVDLETTGALKGGNKITEIGLVKV-QHGKVIDTWTTL---VNPQRHIPGFITSLTGIS 622

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V    F+  +    +     I   +N+ FD  + +                 
Sbjct: 623 DSMVSNAPV----FADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVP-------- 670

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +   L  +                     S+ L +L+    +   + H A AD  AT
Sbjct: 671 --FKMPKLCTVVESRKAFAGL----------KSYSLGNLSKHFNLNLTSHHRALADATAT 718

Query: 185 LALVWLIREKKP 196
             L+ LI++ + 
Sbjct: 719 AQLLLLIQKSQS 730


>gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448]
 gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 1469

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/482 (11%), Positives = 129/482 (26%), Gaps = 51/482 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FVI+D ET G     +   +F  V + +   +IE  + F           P    ITGI
Sbjct: 410 KFVIFDLETTGLSAFYNEIIEFGAVVL-QNGIEIEKHQFF---IKPTGKIPPAITKITGI 465

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      +       +I +        ++  +N  FD  +         +   +    
Sbjct: 466 SQKMIDETAISWEIALEKITKIIKDS---VLVAHNAAFDFSFLEQ------FFRQKAKKS 516

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D L+V R               +    S  L+++A    IE+    AH A  D 
Sbjct: 517 LKNPIIDTLEVSR-------------FLNPNEKSHSLKNVAKRYEIEYAEEIAHRADYDA 563

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
                +      +            +  KN + +L   +     + +             
Sbjct: 564 KILTTIWKNFLAELKSQNINDLTSLSEIKNSIFELRPEKVFPKQLTIIAKNQIGIKKLYK 623

Query: 240 IAPVAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
           +  +A         +I  +                +  + T        V          
Sbjct: 624 LVSLANTENLISRPLIFYDHLQKDPDLLIGSGGPESLLIQTMLYFGPKNVAEFAHIFDFI 683

Query: 299 KCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           + P     + +   +    ++     K  +     L+         +    K        
Sbjct: 684 EIPPPIAFIHLVKREIFTKDQIEDMLKNLINLAKKLQIPAVAIGDVRYCLPKEKIFYELY 743

Query: 356 VDSQ---LYDGFFADVDRQIMDRILRT---------APEQLSTLNLPFSDRRLPELFFRY 403
           + ++     +    D   +  +    +         + E+L        D+   +L    
Sbjct: 744 IYAKGVGGVNHVLFDHREKEREDFRNSHIFPEKHFFSTEELKKEFEFLEDQ---QLIEEI 800

Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
             +N          ++ ++  K  L     +  + KL+    +   ++    L   +   
Sbjct: 801 VVKN--SNFVADLIENNIQIIKSGLYPPSFDSSEVKLKEFVYKKAYEKYGRFLPKLIENR 858

Query: 464 LQ 465
           ++
Sbjct: 859 IK 860


>gi|332184121|gb|AEE26375.1| DNA polymerase III epsilon subunit [Francisella cf. novicida 3523]
          Length = 230

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 24/209 (11%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V        +T  F+C P   Y  +  A+ I G+T
Sbjct: 5   VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRVTGNTLHFYCNPN--YEVEAGALAIHGLT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E     ++ +         +  +N  FD  +          + Y     N
Sbjct: 62  NEFLADKPLFE----DKVDEMIDFLKGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D L++ R  +    +               L  L        +H   H A  D  
Sbjct: 118 VAKIVDSLELARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L        +KN +
Sbjct: 164 LLADVYLAMTGGQTNLSLQTAKTISKNSI 192


>gi|255038895|ref|YP_003089516.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
 gi|254951651|gb|ACT96351.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
          Length = 174

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 29/193 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G      R  + A  R D     ++           +    P    +TGI 
Sbjct: 2   YAIVDIETTGGG-GTSRITEIAVFRHDGA-RIVDFFHSL---INPEIYIPPFITRLTGID 56

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E    +              +N +FD  + +  F             +
Sbjct: 57  NEMVKDAP-TFYEVQDAVRAMTRD---AWFVAHNAKFDYGFIKREFGAL----------D 102

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              + DLL  ++                 G  S+ L +L  +  I   N H A  D  AT
Sbjct: 103 EYFQRDLLCTVQLSRKIF----------PGLKSYSLGNLCESLEIMIENRHRAHGDAEAT 152

Query: 185 LALVWLIREKKPK 197
           + L   +     +
Sbjct: 153 VRLFEKLLLHDRQ 165


>gi|117923346|ref|YP_863963.1| DNA polymerase III subunit epsilon [Magnetococcus sp. MC-1]
 gi|117607102|gb|ABK42557.1| DNA polymerase III, epsilon subunit [Magnetococcus sp. MC-1]
          Length = 237

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 51/190 (26%), Gaps = 29/190 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
               ++ D ET G D     R  +   V    +   +   +        +     +A  +
Sbjct: 1   MERLIVLDTETTGFDPKEGHRIIEIGCV----ELVNMRKGDERQWYVNPEREIPADATKV 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT             F    H+F +      +  +N  FD  +      R      + 
Sbjct: 57  HGITDADVANSPK----FKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRL----NKR 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D + + R  +                ++  L  L    G+++     H A 
Sbjct: 109 LVMPMERAIDTIPLARRKFPG--------------STVNLDALCKRLGVDNSGRTFHGAL 154

Query: 179 ADVYATLALV 188
            D +    + 
Sbjct: 155 LDAHLLAEVY 164


>gi|322831648|ref|YP_004211675.1| DNA polymerase III, subunit epsilon [Rahnella sp. Y9602]
 gi|321166849|gb|ADW72548.1| DNA polymerase III, epsilon subunit [Rahnella sp. Y9602]
          Length = 245

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 61/213 (28%), Gaps = 30/213 (14%)

Query: 2   TNHFVIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           +N  V+ D ET G +         R  +   V V            F      D L DPE
Sbjct: 7   SNRIVVLDTETTGMNKLGVHYEGHRIIEIGAVEV-VNRRLTGR--NFHVYLKPDRLVDPE 63

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A  + GI+ +         A+ +    ++        +  +N  FD  +    F     +
Sbjct: 64  AFGVHGISDEFLADKP-TFADVADDFIEYIRGGE---LVIHNATFDIGFMDYEFDMLGRN 119

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-- 174
             +          D L + R ++                    L  L+    I++     
Sbjct: 120 LPKTE--TFCKITDSLAMARKLFPG--------------KRNNLDALSDRYLIDNSKRTL 163

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
           H A  D      +  ++   +  +       +N
Sbjct: 164 HGALLDSEILAEVYLMMTGGQTSIKFTHEGEQN 196


>gi|296089746|emb|CBI39565.3| unnamed protein product [Vitis vinifera]
          Length = 332

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 27/210 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G   A DR  +      D    +  + +       +  +P+P    + GI
Sbjct: 127 TVIVFDTETTGLSRANDRIIEIGLQ--DLGGGENSTFQTLVN--PERIVPNP---HVHGI 179

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117
           T     R  V    +    + Q+      P   I  + +N   FD  +  N F R     
Sbjct: 180 TTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCN--- 236

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
                       D L + R +           +  D      LQ L     I     AH 
Sbjct: 237 --TEVPPNWRFLDTLPLARELIK--------SAGSDLPPGASLQALREYYRIPLVGPAHR 286

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYR 206
             +DVY    ++ ++          L D  
Sbjct: 287 VLSDVYTLSQVLQMLTFNLKVSVANLLDRS 316


>gi|302184787|ref|ZP_07261460.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           syringae 642]
          Length = 203

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +  Q   +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +  F     +  +  +N  FD  +      R        
Sbjct: 57  TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR-------I 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                 S    L + R                 GA + KL  L       +   AH A A
Sbjct: 106 QRTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +  +  +  
Sbjct: 153 DAEMAANLTVHLTNELRQTH 172


>gi|90415683|ref|ZP_01223617.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90333006|gb|EAS48176.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 528

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 28/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V+ D ET G      R  +   + V  Q + +E  + F      + +  P    +T
Sbjct: 21  PEKMVLLDLETTGGKATHHRIIEIG-LLVIEQGKVLERWQSF---VDPETVLPPFIQKLT 76

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P       +  +E +  +  + +      +  +N RFD  + +N F R         
Sbjct: 77  GIAPSMLRGAPL-FSEVAETLLTYLNDR---TLVAHNARFDYGFLKNEFQRIGISYNAKP 132

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L  ++   +                   L  +     +   N H A  D 
Sbjct: 133 ----------LCSVKFSRSLY----------PQFKRHGLDQIIKRFQLPIENRHRALDDA 172

Query: 182 YATLALV 188
                  
Sbjct: 173 EMIQRFF 179


>gi|255030410|ref|ZP_05302361.1| DNA polymerase III PolC [Listeria monocytogenes LO28]
          Length = 459

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + ++D ET G     D   + AGV++ +  E I+  E F       +      + +TGI
Sbjct: 343 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 398

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           T         ++      + +F       I+  +N  FD  +    + +   +
Sbjct: 399 TDDMVKGSDPIDV----VLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLE 447


>gi|224476576|ref|YP_002634182.1| hypothetical protein Sca_1089 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421183|emb|CAL27997.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 895

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G     D   Q   +   + +E + S          D    P    +T I
Sbjct: 5   TYAVVDLETTGNQKDYDDIIQIG-ITFVKGFEIVGSYHSL---IKTDLEIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q   +      E +  I++        +   +N+ FD  + +  F ++          
Sbjct: 61  EDQMLTQAPY-FNEVAEEIYELMKDS---VFVAHNVAFDLTFLKKAFKKS---------- 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    ++             +        S++L +LA  + I   NAH A  D   
Sbjct: 107 ---------NITYQPRKVIDTVELFKIAFPTDKSYQLSELAEYHDIPLENAHRADEDAAT 157

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+         L      
Sbjct: 158 TAKLMIKAFNVLYTLPTDTLK 178


>gi|313674243|ref|YP_004052239.1| exonuclease RNAse t and DNA polymerase iii [Marivirga tractuosa DSM
           4126]
 gi|312940941|gb|ADR20131.1| Exonuclease RNase T and DNA polymerase III [Marivirga tractuosa DSM
           4126]
          Length = 267

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  VI+D ET G +V  DR  +++ V+V    + I++TE    K   +     E+  I
Sbjct: 5   LKNPLVIFDLETTGTNVVNDRIVEYSFVKVMPDGDVIKNTE----KVNPERPIPLESSLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +            ++ +  F       + G+N ++FD       F R   D    
Sbjct: 61  HGIYDKDVKDKP-TFKAMAKELSSFL--HGCDLAGFNILKFDVPVLVEEFLRADVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                       D+ +     +        +     ++K        G E V+AH A+AD
Sbjct: 114 -----------FDISKRKLLDAQKIFHMMEKRTLTAAYKF-----YCGKELVDAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             ATL ++    ++          
Sbjct: 158 TLATLEVLDAQIKRYEGESLMDLK 181


>gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185]
 gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195]
 gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185]
 gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195]
 gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
 gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678]
          Length = 242

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           VI D ET G +          R  +   V V             +         DPEA+ 
Sbjct: 11  VILDTETTGMNQGSGAIYLGHRIIEIGCVEV-VNRRLTGRYYHQY--INPGQAIDPEAIA 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT ++  ++     + ++    F    +   I  +N  FD  +  + F  +      
Sbjct: 68  VHGITDERVSKEPRFH-QVAQDFINFI---DGAEIVAHNANFDVSFMDHEF--SLLQPRG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
               +     D L + + ++    +               L  L    G++      H A
Sbjct: 122 PKTADICQILDTLVIAKFLHPGQKN--------------NLDALCKRYGVDTSRREYHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  ++   + K 
Sbjct: 168 LLDAEILADVYLIMTGGQTKF 188


>gi|255029619|ref|ZP_05301570.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes LO28]
          Length = 132

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +++ D ET G   +  DR  QFA   V    +++E+   F      +         +
Sbjct: 3   QKRYIVVDLETTGNQASREDRIIQFAACFV-ESGKRLETYTTF---LNPEKPIPAFIQEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+P+      + E + +  I          I   +N+ FD  +      R        
Sbjct: 59  TGISPKDVKNAPLFE-DVAPIIANLLED---TIFVAHNVSFDWTFLEREMTRAGI----- 109

Query: 121 SWDNGNSRWDLLDVMRAIYA 140
                  + D +++ R +Y 
Sbjct: 110 -SLGKMKKLDTVELARIMYP 128


>gi|156974738|ref|YP_001445645.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|156526332|gb|ABU71418.1| hypothetical protein VIBHAR_02456 [Vibrio harveyi ATCC BAA-1116]
          Length = 249

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
           FV  D+ET G +   D       V        +   +    +      +   + E+V I 
Sbjct: 59  FVSVDFETTGLNAEQDAILTIGLVPF-----TLGRVQCSGSRHWVVNPNRELNEESVVIH 113

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +      +E +    I    +     I+  +    +  + +N    +  +  +  
Sbjct: 114 GITDSEVKNAPQLE-QILDAILDELA---GKIVVVHYKSIERQFFKNALLNSLGEGIQ-- 167

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D LD+  AI     +G     +     S +L        +     H A  D 
Sbjct: 168 ----FPVVDTLDIEYAIQRRECEGWLNKLKGKKPGSVRLGHARERYHLPSYQPHHALTDA 223

Query: 182 YATLALVWLIREKK 195
            AT  L+    +  
Sbjct: 224 LATAELLQAQLQYH 237


>gi|262193953|ref|YP_003265162.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077300|gb|ACY13269.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 19/190 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V  D ET G D       + A +RV  +  + E   V   +P      DPEA+ + 
Sbjct: 1   MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVN 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G   +      V   +    +          ++  +N+ FD  +    +    +      
Sbjct: 61  GYRRRAWADA-VSLGDAMSELAPMLE---GAVLAGHNVAFDRSFLEAAWDYVGHRPEN-- 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               +   D   +   +                  S  L  +    G+     H A  DV
Sbjct: 115 --LDHHALDTATLAFPL-----------LMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDV 161

Query: 182 YATLALVWLI 191
            A L +   +
Sbjct: 162 RACLGVARRL 171


>gi|39996485|ref|NP_952436.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|39983365|gb|AAR34759.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400]
          Length = 181

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 49/182 (26%), Gaps = 26/182 (14%)

Query: 8   YDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
            D ET G      DR  + A V VD   + +                      I GIT  
Sbjct: 10  IDVETTGLFPGYGDRVVEVAAVLVDE-GQIVSEFSSL---IRVTKAIPRHVSMIHGITND 65

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 + E E    +  F     T ++  +N RFD  + R+ F R              
Sbjct: 66  MLADQPLPE-EVYPALGDFI---GTALLVAHNARFDLAFLRHEFGRLGLSLNS------- 114

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                    R+         + P   D       Q L  A   E    H A  D   T  
Sbjct: 115 ---------RSACTLELARRRLPELTDHRLETVYQHLFGAV-PEGTRCHRALDDARLTAR 164

Query: 187 LV 188
           + 
Sbjct: 165 VW 166


>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 329

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 76/279 (27%), Gaps = 29/279 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  RVD + E  +           +  P P  V+I G+T
Sbjct: 21  YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 74

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   E +  + +     +  ++  +N  FD       + R    +       
Sbjct: 75  SEVLEGAPL-FPEIAEELSRRL---DGRVLVAHNAVFDWSMLAREYARAGITAPVR---- 126

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   + + + +                  + KL+ LA   G+E   AH A  D    
Sbjct: 127 --RRLCTIALAKELAL-------------PLPNHKLETLAAHFGVEQRRAHHALDDARVL 171

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
                            L     +            T          A     +   P  
Sbjct: 172 AEAFRPSLRAAALGGVRLPLLECRPLTEWSDSPARPTIGRQYGSRPAAGNWRPSRKRPPC 231

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283
            +P       G  L   MR+    D+    + L     E
Sbjct: 232 PYPNPGRWQDGQPLVQGMRIAFSGDTSTERELLEDRATE 270


>gi|116493923|ref|YP_805657.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Lactobacillus casei ATCC 334]
 gi|116104073|gb|ABJ69215.1| 3'-5' exonuclease and CRISPR-associated protein cas2 [Lactobacillus
           casei ATCC 334]
          Length = 301

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 26/184 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G D   D       V+      + E                     +TG++
Sbjct: 130 FVALDIETTGLDAERDAIIAIGAVK-GPSVNETEKFTTL---VNPRRPLPSTVAKLTGLS 185

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++ + +G+  +E  + +  F     +  +   N+RFD  +                   
Sbjct: 186 AEELVANGISLSEAVQALRDFT---GSLPLVGYNLRFDMGFLSAAGRETGLT------SF 236

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           GN  +DLL +++    F  +             +KL  +     I++   H A +D  AT
Sbjct: 237 GNQTFDLLPLVKKSSRFLDN-------------YKLSTVLAHYQIDNEQPHHALSDATAT 283

Query: 185 LALV 188
           +AL 
Sbjct: 284 MALA 287


>gi|208779358|ref|ZP_03246704.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG]
 gi|208745158|gb|EDZ91456.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG]
          Length = 238

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V        +   F+C P   Y  +  A+ I G+T
Sbjct: 13  VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YEVEAGALAIHGLT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E     ++ +         +  +N  FD  +          + Y     N
Sbjct: 70  NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D LD+ R  +    +               L  L        +H   H A  D  
Sbjct: 126 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRAFHGALLDSE 171

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L        +KN +
Sbjct: 172 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 200


>gi|291278558|ref|YP_003495393.1| hypothetical protein DEFDS_0125 [Deferribacter desulfuricans SSM1]
 gi|290753260|dbj|BAI79637.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 207

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 22/200 (11%)

Query: 5   FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + ++D E+ G +    DR  +   V++   +  I+    F            ++  I GI
Sbjct: 18  YCVFDIESTGINPFDGDRIVEIGAVKIKPGF-VIDYKNKFHVLVNPGIPIPEDSQKIHGI 76

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +     + F      CI   +N R D  + R I      D       
Sbjct: 77  TDEDVANAP----DECEAYYNFIEFAKGCIPVAHNARKDMAFLRRISKEYLIDEPFEFVL 132

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +  +    ++V+   +       ++  R                       H A  D  A
Sbjct: 133 DTLALSKKVNVLSRYHNLDALIEKYNVRIKSN----------------YKRHRALYDAEA 176

Query: 184 TLALVWLIREKKPKLFEYLY 203
           T  +  ++       + +  
Sbjct: 177 TSVIFKIMMNDIYNKYRFSL 196


>gi|283851810|ref|ZP_06369087.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B]
 gi|283572726|gb|EFC20709.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B]
          Length = 249

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 51/200 (25%), Gaps = 10/200 (5%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D E  G D           VR+            F+           +A  I  +T
Sbjct: 49  FVAVDTELTGFDPRRHALVSIGAVRLRGLSILPGE--AFYTLVRPPAAVPRDATLIHRLT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         +  +  F       ++  +++  D  +      R+          +
Sbjct: 107 GAALADAPP----VAEALAAFLDFLGPAVVVGHHVDLDMGFLNAAARRHMGGELAAPCID 162

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L +       +  G            ++L  L    G+    AHDA+AD  AT
Sbjct: 163 TLR----LAMALEEKRLAVAGGAGGPDGFERVDYRLPALCRRYGLPGFAAHDARADALAT 218

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L   +     +       
Sbjct: 219 AYLFLYLARHCGRARPLTLS 238


>gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
 gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
          Length = 1468

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 30/197 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G     DR  + A    D   +   +       P   YL   +   +TGIT 
Sbjct: 308 IVFDLETTGLAKLKDRIIEIAA--YDLNDK-THAPMSTLVNPGRTYL-TGQITRLTGITN 363

Query: 66  QKALRDGVVEAEFSRRIHQFFSV--------PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                 GV     +  + + F           +  +  +N  +FD  + +  + R     
Sbjct: 364 AMVSNPGVPSFVRAAELLEEFVDEARRRGGGASVILAAHNARQFDAGFLKAEYDR----- 418

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG---IEHVNA 174
            +  + +     D L + R          +   + +   S K++ LA       ++   A
Sbjct: 419 IQREFPDDWRFVDTLPIAR----------KLVPKTEVFGSHKMEALATRYDVKPVDGETA 468

Query: 175 HDAKADVYATLALVWLI 191
           H A AD      +V  +
Sbjct: 469 HRAGADARVLGEIVEAM 485


>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
 gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
          Length = 1469

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/482 (11%), Positives = 129/482 (26%), Gaps = 51/482 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FVI+D ET G     +   +F  V + +   +IE  + F           P    ITGI
Sbjct: 410 KFVIFDLETTGLSAFYNEIVEFGAVVL-QNGIEIEKHQFF---IKPTGKIPPAITKITGI 465

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      +       +I +        ++  +N  FD  +         +   +    
Sbjct: 466 SQKMIDETAISWEIALEKITKIIKDS---VLVAHNAAFDFSFLEQ------FFRQKAKKS 516

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D L+V R               +    S  L+++A    IE+    AH A  D 
Sbjct: 517 LKNPIIDTLEVSR-------------FLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDA 563

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
                +      +            +  KN + +L   +     + +             
Sbjct: 564 KILTTIWKNFLAELKSQNINDLTSLSEIKNSIFELRPEKVFPKQLTIIAKNQIGIKKLYK 623

Query: 240 IAPVAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
           +  +A         +I  +                +  + T        V          
Sbjct: 624 LVSLANTENLISRPLIFYDHLQKDPDLLIGSGGPESLLIQTMLYFGPKNVAEFAHIFDFI 683

Query: 299 KCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           + P     + +   +    ++     K  +     L+         +    K        
Sbjct: 684 EIPPPSAFIHLVKREIFTKDQIEEMLKNLINLAKKLQIPAVAIGDVRYCLPKEKIFYELY 743

Query: 356 VDSQ---LYDGFFADVDRQIMDRILRT---------APEQLSTLNLPFSDRRLPELFFRY 403
           + ++     +    D   +  +    +         + E+L        D+   +L    
Sbjct: 744 IYAKGVGGVNHVLFDHREKEREDFRNSHIFPEKHFFSTEELKKEFEFLEDQ---QLIEEI 800

Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
             +N          ++ ++  K  L     +  + KL+    +   ++    L   +   
Sbjct: 801 VVKN--SNFVADLIENNIQIIKSGLYPPSFDNSEVKLKEFVYKKAYEKYGRFLPKLIENR 858

Query: 464 LQ 465
           ++
Sbjct: 859 IK 860


>gi|227497246|ref|ZP_03927486.1| DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM
           15434]
 gi|226833294|gb|EEH65677.1| DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM
           15434]
          Length = 249

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 15/204 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F+ +D ET G D + DR    A V R  R  E     EV            P A  + GI
Sbjct: 17  FLGFDTETTGVDPSQDRLVTAALVMRGPRHGEGTRRQEVVTWLADPGVPIPPGASAVHGI 76

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           + ++A  +G    +    + Q  +        +   N  FD     +   R+   + R  
Sbjct: 77  STERAQAEGRPAPQVLEEVAQRLAQAMGAGTPVVAFNASFDLTLMEHELARHGLATLRE- 135

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
              G     +LD +    A                  +L  +    G++   A H A+ D
Sbjct: 136 -RLGGPLAPVLDPLVLDRAV---------DRFRKGKRRLDAMCQVYGVQVDEALHTAEVD 185

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
           V ATL ++  +    P+L +    
Sbjct: 186 VAATLDVLEALAHAYPELAQMSLS 209


>gi|114047347|ref|YP_737897.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7]
 gi|113888789|gb|ABI42840.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7]
          Length = 239

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 52/199 (26%), Gaps = 30/199 (15%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G       R  +   V +  Q +               +  +      T
Sbjct: 38  NTLVVLDFETSGLSPNQGARAIEIGAVLI-EQGQITARFSELM---NPGFRINSFIEDYT 93

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ Q         AE   R   F        +  +N  FD  +    F +  +      
Sbjct: 94  GISNQMLAHA-APCAEVMARFAAFIGKH---HLVAHNAAFDQRFLDAEFAQIGH------ 143

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                         +    F    +        A + +L  L     +      H A AD
Sbjct: 144 --------------QYPGQFGCSLLLARRLYPEAINHQLATLVRHKQLPTDGTFHRALAD 189

Query: 181 VYATLALVWLIREKKPKLF 199
              T  L   +     + +
Sbjct: 190 AEMTGHLWLRMLADLKQGY 208


>gi|307730502|ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585037|gb|ADN58435.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 244

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 58/205 (28%), Gaps = 27/205 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   LILDTETTGLNARTGDRILELGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE + +   F    +  I   +N  FD  +    F              
Sbjct: 61  TEFLSDKPK-FAEIADQFRDFIQGADLII---HNAPFDIGFLDAEFALLGLPPVS---TY 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 114 CGEIIDTLARAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207
               +   +   +  L   +    +
Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGESH 184


>gi|311895419|dbj|BAJ27827.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 235

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 53/175 (30%), Gaps = 17/175 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A V       +  +                EA  I GIT  +
Sbjct: 11  FDLETTGTDPEESRIVTAAVVDTLGGGVQGAT----TWLLDPGVPIPDEAAAIHGITDAE 66

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G   AE    I +  +        +   N  FD         R+   +       G
Sbjct: 67  ARANGRPAAEAIEEIARTLAERLAAGRPVVAFNAPFDLSLLDAELRRHGLPTLAD--RLG 124

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                ++D M    A                S  LQ +    G+E  +AH+A +D
Sbjct: 125 GPVAPVVDAMVVDRAL---------DKYRKGSRTLQRVCEVYGVELRDAHEAGSD 170


>gi|269214643|ref|ZP_05986966.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           lactamica ATCC 23970]
 gi|269209302|gb|EEZ75757.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           lactamica ATCC 23970]
          Length = 470

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAELTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGELFSVLK---GCVLIAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207


>gi|146282599|ref|YP_001172752.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri A1501]
 gi|145570804|gb|ABP79910.1| DNA polymerase III, epsilon chain [Pseudomonas stutzeri A1501]
 gi|327480856|gb|AEA84166.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 4166]
          Length = 241

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           V+ D ET G  V    R  +   V      E I        +      D   D  A+ + 
Sbjct: 4   VVLDTETTGMPVTDGHRIIEIGCV------EVIGRRLTGRHYHVYLQPDREVDEGAIAVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +       + +    +F        +  +N  FD  +  N  +       R  
Sbjct: 58  GITNEFLVDKPR-FRDIADEFFEFIKDAQ---LVIHNAAFDLGFINNE-FALLGQQDRAE 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
             +  +  D L + R  +    +               L  L    G+++     H A  
Sbjct: 113 ITDHCTVLDTLLMARERHPGQRN--------------SLDALCKRYGVDNSGRDLHGALL 158

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 159 DAEILADVWLTMTGGQTN 176


>gi|332969609|gb|EGK08627.1| DNA polymerase III, epsilon subunit [Kingella kingae ATCC 23330]
          Length = 463

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 59/209 (28%), Gaps = 43/209 (20%)

Query: 1   MTNHF--------------VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK 46
           M  +F              VI D ET G     DR  + A +R  +        +     
Sbjct: 10  MMMNFSDLAQFFDTLNMPVVILDLETTGGHFVQDRITEVAFLRFWQ-----GDVQRVSYL 64

Query: 47  PADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
                   P    +TGI  Q   R        ++ +     +    +   +N RFD  + 
Sbjct: 65  VNPQKEISPFVQKLTGIDNQMVRRAPA----LAKILPDLLPLLRGALFIAHNSRFDYTFW 120

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
           RN   R        +          L  ++      P   +            L  +   
Sbjct: 121 RNECQRAGVAFAALT----------LCSVQLSRKLYPQYHK----------HSLDSIIER 160

Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKK 195
           NG+   + H A ADV A    +    ++ 
Sbjct: 161 NGLIVPSRHRAMADVDALAQFLQQALQEH 189


>gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 332

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 69/279 (24%), Gaps = 30/279 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D Q    +              P P   +I G+T
Sbjct: 27  YAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTL---VNPRRDPGP--TWIHGLT 80

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +  A+ +       +     ++  +N  FD       + R            
Sbjct: 81  SAMLQDAPL-FADIAEEFAGRLADR---VLVAHNAIFDWQMIAREYARA----------- 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                        +             +    + KL+ LA   G+    AH A  D    
Sbjct: 126 --------SATAPVRQRLCTIALSKELNLPLPNHKLESLAAHYGVVQQRAHHALDDARVL 177

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
                       +             L +  D      + + S          +   P  
Sbjct: 178 AEAFRPSLHAAARD-GVRLPLLECRPLTEWSDSPATPRVGYQSSYGNGGSWRASRKRPPC 236

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283
            +P       G  L   MR+    D+    + L     E
Sbjct: 237 PYPNPGRFEDGKPLRQGMRIAFSGDTSVDRELLEDRAVE 275


>gi|257094042|ref|YP_003167683.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046566|gb|ACV35754.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 484

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 56/191 (29%), Gaps = 30/191 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G + A DR  +   V VD     +    V       +    P    +TGI 
Sbjct: 12  LVFVDLETSGANFASDRVIEVGLVEVDADG--VREWSVL---VNPEAPISPFITRLTGID 66

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       + +  +          ++  +N RFD  + +  F R   +        
Sbjct: 67  DAMVGSAP-TFRQLAPTLL---DRLRGRLLVAHNARFDYGFLQCEFKRLGVE-------- 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYA 183
              R   L  ++      P+  +            L  L   +G++   N H A AD   
Sbjct: 115 --FRTPTLCTVKLSRKLFPEHHR----------HNLDALVTRHGLKVAGNRHRALADARI 162

Query: 184 TLALVWLIREK 194
              L     + 
Sbjct: 163 LWELWQCWHKD 173


>gi|153832018|ref|ZP_01984685.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|148872016|gb|EDL70839.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
          Length = 249

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
           FV  D+ET G +   D       V        +   +    +      +   + E+V I 
Sbjct: 59  FVSVDFETTGLNAEQDAILTIGLVPF-----TLGRVQCSGSRHWVVNPNRELNEESVVIH 113

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +      +E +    I    +     I+  +    +  +  N    +  +  +  
Sbjct: 114 GITDSEVKNAPQLE-QILDAILDELA---GKIVVVHYKNIERQFFNNALLNSLGEGIQ-- 167

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D LD+  AI     +G     +     S +L        +     H A  D 
Sbjct: 168 ----FPVVDTLDIEYAIQRRECEGWLNKLKGKKPGSVRLGHARERYHLPAYQPHHALTDA 223

Query: 182 YATLALVWLIREKK 195
            AT  L+    +  
Sbjct: 224 LATAELLQAQLQYH 237


>gi|114321140|ref|YP_742823.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227534|gb|ABI57333.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 243

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 58/199 (29%), Gaps = 28/199 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G + +  DR  +   V  VDR          F      D     EAV + GI
Sbjct: 4   IVLDTETTGLEWSQGDRVIEIGCVELVDR--RPTG--NNFHQYLNPDREVPQEAVEVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E + R  ++        +  +N  FD  +      R      R    
Sbjct: 60  TNDFLADKPRFH-EVAERFVEYIRGSE---LVIHNAAFDVGFLDYELSRLGRGWGRVE-- 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
           +  S  D L + R  +    +               L  L     +++     H A  D 
Sbjct: 114 DFASVLDTLLLARQRHPGQRN--------------SLDALCKRYDVDNTQRELHGALLDA 159

Query: 182 YATLALVWLIREKKPKLFE 200
                +   +   +  LF 
Sbjct: 160 RILADVYLAMTGGQKALFT 178


>gi|103488315|ref|YP_617876.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
 gi|98978392|gb|ABF54543.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 231

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 53/192 (27%), Gaps = 35/192 (18%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTE---VFFCKPADDYLPDPEAVFIT 61
           +I+D ET G D    DR  +   V      E I+  E    F      +      A  + 
Sbjct: 4   IIFDTETTGFDPRNGDRLVEIGCV------ELIDRRETGVTFHAYFNPERDMPAAAEAVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ Q      +    F+ R+ +         +  +N  FD  +      R         
Sbjct: 58  GLSSQFLSDKPL----FAARVDELLDFFGDAPLIAHNAAFDFGFVNAELERIGRPP---- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179
                     LD+ R            P          L  L    GI+  H   H A  
Sbjct: 110 ----------LDMARMCCTVQMARKLHPGA-----KHSLDALCTRYGIDRSHRIKHGALL 154

Query: 180 DVYATLALVWLI 191
           D      L   +
Sbjct: 155 DAELLAHLYIEM 166


>gi|291540867|emb|CBL13978.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 235

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V+ D E  G +   D   +   VRV R  + ++      C+   +     +   +T
Sbjct: 1   MQDYVVIDLEMTGLNAKTDHILEVGAVRV-RNHQAVDKFGAILCQ---NVKIPEKVTELT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT       G+ + E  R+  +F       II   N+ FD  + +     +        
Sbjct: 57  GITEAMVQG-GMEKEEAMRQFFEFI---GEDIIVGQNVIFDYGFLKQWAVNHNMP----- 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                +  D L + R                       L+ L    G++  NAH A  D 
Sbjct: 108 --LERNAVDTLKLARKF-------------LPKEQKKDLESLCACFGVKRENAHRAFDDA 152

Query: 182 YATLALVWLIREKKPKL 198
           Y T  +   +RE+  + 
Sbjct: 153 YETWQVYEALRERYEEE 169


>gi|330895532|gb|EGH27842.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 203

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 51/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +  Q   +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPGHSCRATEIA-VVIMAQGRIVERFQSLM---NAGVRIPAFIEGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +  F     +  +  +N  FD  +      R        
Sbjct: 57  TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSR-------I 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                 S    L + R                 GA + KL  L       +   AH A A
Sbjct: 106 ERTREQSFACSLLLAR-------------RLMPGAPNHKLGTLTRYARLPDTGKAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +  +  +  
Sbjct: 153 DAEMAANLTAYLTNELRQTH 172


>gi|262194198|ref|YP_003265407.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077545|gb|ACY13514.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 54/190 (28%), Gaps = 19/190 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V  D ET G D       + A +RV  Q    E   V   +P      DPEA+ + 
Sbjct: 1   MQPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVN 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G   +      V   +    +          ++  +N+ FD  +    +    +      
Sbjct: 61  GYRRRAWADA-VSLGDAMAELAPMLE---GAVLAGHNVAFDRRFLEAAWDYVGHRPEN-- 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               +   D   +   +                  S  L  +    G+     H A  DV
Sbjct: 115 --LDHHALDTATLAFPL-----------LMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDV 161

Query: 182 YATLALVWLI 191
            A L +   +
Sbjct: 162 RACLGVARRL 171


>gi|89256347|ref|YP_513709.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314792|ref|YP_763515.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|254367683|ref|ZP_04983704.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|254369321|ref|ZP_04985333.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|89144178|emb|CAJ79442.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129691|gb|ABI82878.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253494|gb|EBA52588.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|157122271|gb|EDO66411.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 238

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V        +   F+C P   Y  +  A+ I G+T
Sbjct: 13  VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YKVEAGALAIHGLT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E     ++ +         +  +N  FD  +          + Y     N
Sbjct: 70  NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D LD+ R  +    +               L  L        +H   H A  D  
Sbjct: 126 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 171

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L        +KN +
Sbjct: 172 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 200


>gi|163782941|ref|ZP_02177936.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881621|gb|EDP75130.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 215

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 64/201 (31%), Gaps = 29/201 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV++D ET G D+          +R V+  +   ES    F KP +        V I G
Sbjct: 39  TFVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFH-RFVKPKELTRVS---VEIHG 94

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITP +  +             ++     + ++G+N         +            +  
Sbjct: 95  ITPHELEKKAESHDRVLEDFMEYVR--GSVLVGFNVEFDRKIVEKYSLKVLGLPLLNY-- 150

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R D+  +             W  R     S  L+D+A   GI  V AH A  D Y
Sbjct: 151 -----RLDVFRL-------------WKKRGGREGS--LKDIAEELGIPVVGAHSALDDAY 190

Query: 183 ATLALVWLIREKKPKLFEYLY 203
            T  +   + ++         
Sbjct: 191 ITALVFLKLLKRFRGANLSSL 211


>gi|76810101|ref|YP_333003.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           1710b]
 gi|121601053|ref|YP_992607.1| DNA polymerase III subunit epsilon [Burkholderia mallei SAVP1]
 gi|124385495|ref|YP_001026592.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10229]
 gi|126441990|ref|YP_001058508.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668]
 gi|126455280|ref|YP_001065768.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           1106a]
 gi|134282747|ref|ZP_01769450.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
 gi|217423557|ref|ZP_03455058.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
 gi|226196200|ref|ZP_03791785.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811761|ref|YP_002896212.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238563612|ref|ZP_00438559.2| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
           4]
 gi|242318034|ref|ZP_04817050.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106b]
 gi|251767848|ref|ZP_02268597.2| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
 gi|254177751|ref|ZP_04884406.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           10399]
 gi|254180217|ref|ZP_04886816.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1655]
 gi|254197669|ref|ZP_04904091.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
 gi|254199436|ref|ZP_04905802.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
 gi|254258454|ref|ZP_04949508.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710a]
 gi|254298053|ref|ZP_04965506.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           406e]
 gi|254358851|ref|ZP_04975124.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
           2002721280]
 gi|76579554|gb|ABA49029.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710b]
 gi|121229863|gb|ABM52381.1| DNA polymerase III, epsilon subunit [Burkholderia mallei SAVP1]
 gi|124293515|gb|ABN02784.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
           10229]
 gi|126221483|gb|ABN84989.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 668]
 gi|126228922|gb|ABN92462.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106a]
 gi|134245833|gb|EBA45924.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
 gi|147749032|gb|EDK56106.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
 gi|148027978|gb|EDK85999.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
           2002721280]
 gi|157807726|gb|EDO84896.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           406e]
 gi|160698790|gb|EDP88760.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           10399]
 gi|169654410|gb|EDS87103.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
 gi|184210757|gb|EDU07800.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1655]
 gi|217393415|gb|EEC33436.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
 gi|225931786|gb|EEH27788.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504517|gb|ACQ96835.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238520320|gb|EEP83781.1| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
           4]
 gi|242141273|gb|EES27675.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106b]
 gi|243061566|gb|EES43752.1| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
 gi|254217143|gb|EET06527.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710a]
          Length = 253

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 56/201 (27%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +            F+  P  D   DP A+ + G+T
Sbjct: 17  IILDTETTGLNARAGDRIIEIGCVEL-LNRRLTGKNLHFYVNPERDS--DPGALAVHGLT 73

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    +  F       I   +N  FD  +    F      S+      
Sbjct: 74  TEFLSDKPK-FAEIVDPLRDFVRDAELII---HNAPFDLGFLDAEFALLGLPSFTDHCAG 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 130 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 172

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 173 LLAEVYLAMTRGQESLVIDML 193


>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
 gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 1468

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/482 (11%), Positives = 129/482 (26%), Gaps = 51/482 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FVI+D ET G     +   +F  V + +   +IE  + F           P    ITGI
Sbjct: 409 KFVIFDLETTGLSAFYNEIVEFGAVVL-QNGIEIEKHQFF---IKPTGKIPPAITKITGI 464

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      +       +I +        ++  +N  FD  +         +   +    
Sbjct: 465 SQKMIDETAISWEIALEKITKIIKDS---VLVAHNAAFDFSFLEQ------FFRQKAKKS 515

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D L+V R               +    S  L+++A    IE+    AH A  D 
Sbjct: 516 LKNPIIDTLEVSR-------------FLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDA 562

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
                +      +            +  KN + +L   +     + +             
Sbjct: 563 KILTTIWKNFLAELKSQNINDLTSLSEIKNSIFELRPEKVFPKQLTIIAKNQIGIKKLYK 622

Query: 240 IAPVAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
           +  +A         +I  +                +  + T        V          
Sbjct: 623 LVSLANTENLISRPLIFYDHLQKDPDLLIGSGGPESLLIQTMLYFGPKNVAEFAHIFDFI 682

Query: 299 KCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           + P     + +   +    ++     K  +     L+         +    K        
Sbjct: 683 EIPPPSAFIHLVKREIFTKDQIEDMLKNLINLAKKLQIPAVAIGDVRYCLPKEKIFYELY 742

Query: 356 VDSQ---LYDGFFADVDRQIMDRILRT---------APEQLSTLNLPFSDRRLPELFFRY 403
           + ++     +    D   +  +    +         + E+L        D+   +L    
Sbjct: 743 IYAKGVGGVNHVLFDHREKEREDFRNSHIFPEKHFFSTEELKKEFEFLEDQ---QLIEEI 799

Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
             +N          ++ ++  K  L     +  + KL+    +   ++    L   +   
Sbjct: 800 VVKN--SNFVADLIENNIQIIKSGLYPPSFDNSEVKLKEFVYKKAYEKYGRFLPKLIENR 857

Query: 464 LQ 465
           ++
Sbjct: 858 IK 859


>gi|53718980|ref|YP_107966.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           K96243]
 gi|53725133|ref|YP_102525.1| DNA polymerase III subunit epsilon [Burkholderia mallei ATCC 23344]
 gi|126449393|ref|YP_001080124.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10247]
 gi|167719045|ref|ZP_02402281.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei DM98]
 gi|167738046|ref|ZP_02410820.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 14]
 gi|167815230|ref|ZP_02446910.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 91]
 gi|167823638|ref|ZP_02455109.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 9]
 gi|167845182|ref|ZP_02470690.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           B7210]
 gi|167893733|ref|ZP_02481135.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 7894]
 gi|167902185|ref|ZP_02489390.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei NCTC
           13177]
 gi|167910426|ref|ZP_02497517.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 112]
 gi|167918451|ref|ZP_02505542.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           BCC215]
 gi|254188362|ref|ZP_04894873.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|52209394|emb|CAH35339.1| DNA polymerase III, epsilon chain [Burkholderia pseudomallei
           K96243]
 gi|52428556|gb|AAU49149.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           23344]
 gi|126242263|gb|ABO05356.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
           10247]
 gi|157936041|gb|EDO91711.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 240

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 56/201 (27%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +            F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARAGDRIIEIGCVEL-LNRRLTGKNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    +  F       I   +N  FD  +    F      S+      
Sbjct: 61  TEFLSDKPK-FAEIVDPLRDFVRDAELII---HNAPFDLGFLDAEFALLGLPSFTDHCAG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180


>gi|291535622|emb|CBL08734.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 235

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V+ D E  G +   D   +   VRV R  + ++      C+   +     +   +T
Sbjct: 1   MQDYVVIDLEMTGLNAKTDHILEVGAVRV-RNHQAVDKFGAILCQ---NVKIPEKVTELT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT       G+ + E  R+  +F       II   N+ FD  + +     +        
Sbjct: 57  GITEAMVQG-GMEKEEAMRQFFEFI---GEDIIVGQNVIFDYGFLKQWAVNHNMP----- 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                +  D L + R                       L+ L    G++  NAH A  D 
Sbjct: 108 --LERNAVDTLKLARKF-------------LPKEQKKDLESLCACFGVKRENAHRAFDDA 152

Query: 182 YATLALVWLIREKKPKL 198
           Y T  +   +RE+  + 
Sbjct: 153 YETWQVYEALRERYEEE 169


>gi|169656602|ref|YP_001428489.2| DNA polymerase III, subunit epsilon [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954177|ref|ZP_06558798.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312420|ref|ZP_06803198.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|164551670|gb|ABU61533.2| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 238

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V        +   F+C P   Y  +  A+ I G+T
Sbjct: 13  VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YKVEAGALAIHGLT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E     ++ +         +  +N  FD  +          + Y     N
Sbjct: 70  NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D LD+ R  +    +               L  L        +H   H A  D  
Sbjct: 126 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 171

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L        +KN +
Sbjct: 172 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 200


>gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 235

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 54/195 (27%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V +            F C    +   +  A+ + G+T
Sbjct: 4   IVLDTETTGLNPRSGDRVIEIGCVEM-INRRLTGK--NFHCYLNPERDSEEGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A  +  +  + S     I   +N  FD  +    F R     +      
Sbjct: 61  TEFLRDKPK-FAAVAAELRDYISGAEVII---HNAPFDVGFLDAEFKRLDIPLF---NTQ 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
            +   D L   + ++                    L  L    G+   H   H A  D  
Sbjct: 114 VSGVIDTLVQAKEMHPG--------------KRNSLDSLCDRYGVSNAHRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 160 LLAEVYLAMTRGQNS 174


>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 331

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 79/287 (27%), Gaps = 41/287 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  RVD + E  +           +  P P  V+I G+T
Sbjct: 19  YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   E +  + +     +  ++  +N  FD       + R    +       
Sbjct: 73  SEVLEGAPL-FPEIAGELSRRL---DGRVLVAHNAVFDWSMLAREYARAGITAPVR---- 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   + + + +                  + KL+ LA   G+E   AH A  D    
Sbjct: 125 --RRLCTIALAKELAL-------------PLPNHKLETLAAHFGVEQRRAHHALDDARVL 169

Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLV------HVSGMFGASRSN 236
                              L + R               P++             A    
Sbjct: 170 AEAFRPSLRAAALGNVRLPLLECR----PLTEWSDSPARPVIGRQYGGQYGSRPAAGNWR 225

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283
            +   P   +P       G  L   MRV    D+    + L     E
Sbjct: 226 PSRKRPPCPYPNPGRWEDGRPLVQGMRVAFSGDTSTERELLEDRATE 272


>gi|90416118|ref|ZP_01224051.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332492|gb|EAS47689.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 239

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 26/193 (13%)

Query: 6   VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + + D R  +   V +    +        +         D  A+ + GIT
Sbjct: 4   IVLDTETTGLETSQDHRIIEIGCVEL-VGRKLTGRHYHQYV--NPQRKVDVGAMEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q      + E   +R   +F       ++ +N      + +  I   N       S   
Sbjct: 61  DQFLEDKPLFET-VAREFLEFVD--GADLVIHNAPFDVGFINHEIAKLNGAYQAIES--- 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
           G    D L + R  +    +               L  L    G+++     H A  D  
Sbjct: 115 GCRIIDTLALARQKHPGQKN--------------NLDALCKRYGVDNSQRDLHGALLDAE 160

Query: 183 ATLALVWLIREKK 195
               +  L+   +
Sbjct: 161 ILADVYLLMTGGQ 173


>gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 330

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 50/185 (27%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D Q    +           +  P P  V+I G+T
Sbjct: 21  YAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTL---VNPERDPGP--VWIHGLT 74

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   E +          +  ++  +N  FD       + R            
Sbjct: 75  TDVLAGAPL-FPEIAAEFAARL---DGRVLVAHNAMFDWQMIAREYARA----------- 119

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   +    +                  + KL+ LA   G+    AH+A  D    
Sbjct: 120 --------ESAAPVRQRLCTIALAKELSLPLPNHKLESLAAHFGVVQQRAHNALDDARVL 171

Query: 185 LALVW 189
                
Sbjct: 172 AEAFR 176


>gi|307564574|ref|ZP_07627114.1| exonuclease [Prevotella amnii CRIS 21A-A]
 gi|307346732|gb|EFN92029.1| exonuclease [Prevotella amnii CRIS 21A-A]
          Length = 287

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 69/233 (29%), Gaps = 24/233 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    +++D ET G D+  DR  Q + ++V    ++ E   +F            E + +
Sbjct: 5   LKRPLIVFDLETTGLDLVNDRIIQISYIKVYPDGKE-ERENIF---INPGKQIPEEVIAL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +   +      E  + +            G+N+ RFD       F R   +    
Sbjct: 61  TGITNEDVAKAP-TFKEKGKELS--LKFTGCDFAGFNSNRFDIPMLAEEFLRAGIEFDFS 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                                      +   +    +   +        E   AH A  D
Sbjct: 118 KCQ-----------------LVDAQSIFHKMERRNLAAAYEFYCGRKMEEDFKAHRADQD 160

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
             AT A++    E      +       +N +  L D   M   V  +G     
Sbjct: 161 TEATWAVLQGEIEMYSSKNQTDEKRILENSVDALADFSKMNDFVDFAGRIIWK 213


>gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           MSMB43]
          Length = 241

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        S   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARAGDRIIEVGCVEL-LNRRLTGSNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE   ++  F       I   +N  FD  +    F      S+      
Sbjct: 61  TEFLSDKPK-FAEIVDQLRDFVRDAELII---HNAPFDLGFLDAEFALLGLPSFTDHCAG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180


>gi|332638894|ref|ZP_08417757.1| helicase [Weissella cibaria KACC 11862]
          Length = 940

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 27/202 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + + + D ET        R  Q A V   +  + I                    + +TG
Sbjct: 5   DIYAVVDLETTRTTSETGRIIQIA-VAFVQNKKIINQFSTL---VNPGEQIPRNIIQLTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            + +  +H         I   +N+ FD  +    F R    + + + 
Sbjct: 61  ITQNMVKGAP-FFEDVAMTLHAMLQ---GTIFVAHNVNFDLPFLNAEFERVGLTALKST- 115

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D + + + ++               A  ++L D+     +EH + H A +D  
Sbjct: 116 -----ALDTVPLSQILW-------------PTAPGYRLVDMTNCLSLEHNHPHQADSDAL 157

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  I ++   L      
Sbjct: 158 ATGELLIAILKRAEGLPMITLQ 179


>gi|262276480|ref|ZP_06054289.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262220288|gb|EEY71604.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 247

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 58/203 (28%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           +  ++ D ET G +          R  +   V +    +       F      D   DPE
Sbjct: 6   DRIIVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDREIDPE 62

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +         A+      +F        +  +N  FD  +  + F     D
Sbjct: 63  AISVHGITDEFLRDKP-SYADIHAEFLEFIKGAE---LVAHNAPFDTGFMDHEFQ--MLD 116

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                  +     D L + + I+                    L  L    GI+  H   
Sbjct: 117 PSIGKTGDFCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTL 162

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 163 HGALLDAEILADVYLLMTGGQTT 185


>gi|62261930|gb|AAX78030.1| unknown protein [synthetic construct]
          Length = 265

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V        +   F+C P   Y  +  A+ I G+T
Sbjct: 31  VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YEVEAGALAIHGLT 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E     ++ +         +  +N  FD  +          + Y     N
Sbjct: 88  NEFLADKPLFE----DKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQN 143

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D LD+ R  +    +               L  L        +H   H A  D  
Sbjct: 144 VAKIVDSLDLARKKHPLQKN--------------NLDALCKRYQIRNDHRTFHGALLDSE 189

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQL 211
               +   +   +  L        +KN +
Sbjct: 190 LLADVYLAMTGGQTNLSLQTAKTVSKNSI 218


>gi|292493431|ref|YP_003528870.1| DNA polymerase III subunit epsilon [Nitrosococcus halophilus Nc4]
 gi|291582026|gb|ADE16483.1| DNA polymerase III, epsilon subunit [Nitrosococcus halophilus Nc4]
          Length = 242

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 26/193 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +     R  +  GV +     +      F C    +   D  A+ + G++
Sbjct: 4   IILDTETTGLEPKEGHRIIEIGGVEL-INRRRTGQ--TFHCYLNPERRVDEGALKVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E +     F        +  +N  FD  +  +    +   S       
Sbjct: 61  NEFLSDKPR-FVEVAEEFLAFIREAE---LVIHNAPFDVGFLDHEL--SLLGSQWGKVSL 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                D L + R  +    +               L  L    G+++   + H A  D  
Sbjct: 115 YCQVLDTLVLARQRHPGQKN--------------SLDALCKRYGVDNSRRDLHGALLDAE 160

Query: 183 ATLALVWLIREKK 195
               +   +   +
Sbjct: 161 ILAGVYLAMTGGQ 173


>gi|83953070|ref|ZP_00961792.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1]
 gi|83842038|gb|EAP81206.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1]
          Length = 228

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 56/220 (25%), Gaps = 29/220 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +      + +   +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFDPESGDRIVEIGAVELMGH---VATGNTYHQYINPERSMPAEAFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+  +    F        +  +N  FD  +              W    
Sbjct: 61  DEFLRDKPK-FAQIGQDFLDFIGDSK---LVIHNAAFDIKFLNAELKWMGLPQIPWEQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  SP                L  L    GI++ +   H A  D  
Sbjct: 116 ----LDTLAIARKRFPGSPA--------------SLDALCRRFGIDNTSRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
               +   +   +   F        K             P
Sbjct: 158 ILADVYLELIGGRQPDFGLSTKPEKKEGDTTPDWTPKPRP 197


>gi|304311305|ref|YP_003810903.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1]
 gi|301797038|emb|CBL45251.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1]
          Length = 246

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 58/197 (29%), Gaps = 33/197 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G + A   R  +   V      E ++       +      + L D  A+ + 
Sbjct: 7   IVLDTETTGLEPAEGHRIIEIGCV------ELVDRRHTGRHYHQYINPERLVDAGAMAVH 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +         AE +    +F    N   +  +N  FD  +  + F          +
Sbjct: 61  GITNEFLADKPK-FAEIADAFFEFI---NGAELVIHNAAFDVGFINHEFNLLKR---FGT 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                S  D L + R  +    +               L  L     I++     H A  
Sbjct: 114 VGEHCSVLDTLLMARKKHPGQKN--------------NLDALCRRYEIDNSQRELHGALL 159

Query: 180 DVYATLALVWLIREKKP 196
           D      +   +   + 
Sbjct: 160 DAQILADVYLAMTGGQT 176


>gi|255021102|ref|ZP_05293155.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254969516|gb|EET27025.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 475

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 28/193 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
                D E  G  +  DR  +   + V          EV+      +    P    +TGI
Sbjct: 8   TLAFIDLENTGGHLERDRIIEVGIILVAPAG----EPEVWSTLINPEIRLSPAISTLTGI 63

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P          A+ +  + +  +     ++  ++ R D  + R  + R           
Sbjct: 64  DPADLAHAP-TFAQVAEPLREKLA---GRLLIAHDARTDLAFLRQEWRRLGQ-------- 111

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D+L  +R   +  PD               L  +     +     H A  D   
Sbjct: 112 --VFTADVLCTLRLSRSLFPD----------EKRHGLDAIIERLQLHSAGRHRALTDART 159

Query: 184 TLALVWLIREKKP 196
               +  +  ++P
Sbjct: 160 VAIFLARLYSEQP 172


>gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 412

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 69/203 (33%), Gaps = 28/203 (13%)

Query: 1   MTNHFV-IYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+  F  I D ET G      DR A+ A V ++RQ   ++S E              ++ 
Sbjct: 1   MSGEFFSIVDTETTGLFPGGNDRIAEIAIVTMNRQGTIVDSWETL---INPQRDLGKQS- 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I  I  +  L       + +  +H   S     ++  +N+ FD  +    F +      
Sbjct: 57  -IHRIQSRDVLDAP-SFKDLAEELHWRLS---GTVLVAHNLSFDSRFLEAEFRKCGLPVP 111

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                 G      +  MR  + +     +            LQD   + GI+   AH A 
Sbjct: 112 ETFLAQG------MCTMRMSHRYLQGAGR-----------SLQDCCDSFGIDLQQAHSAV 154

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
            D  AT  L+    E  P   E+
Sbjct: 155 GDATATATLLSRYMELDPDEPEW 177


>gi|288928331|ref|ZP_06422178.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331165|gb|EFC69749.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
          Length = 284

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   V++D ET G D+  DR  Q + +++    +  E  E     P        E   +
Sbjct: 5   LTRPLVVFDLETTGLDLVNDRIIQISYIKIYPDGK--EERENLLVYPQ--RPIPDEVSEL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           TGIT          E E + R+++ F        G+N+  FD       F R   D 
Sbjct: 61  TGITTDLVEDAPTFE-ELAPRLNEVFK--GCDFAGFNSNHFDIPMLAEEFLRAEIDF 114


>gi|290961805|ref|YP_003492987.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260651331|emb|CBG74453.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 233

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 55/190 (28%), Gaps = 18/190 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  D          V              A  + G+T ++
Sbjct: 4   FDTETTGVDVETDRIVSAAVVVQDAPGT---RPRVTRWLVNPGVPVPAGATAVHGLTDER 60

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             RDG   A     I +  +        ++  N   FD         R+           
Sbjct: 61  LQRDGRWPAPVMEEIARALAEQAVRGRPLVVMNAP-FDLTLLDRELRRH----------- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S  D       +    P  +             L DL     +    AHDA AD  A 
Sbjct: 109 RASSLDRWFEATPLRVLDPRVLDKHLDRYRKGRRTLTDLCAHYEVVLDGAHDAGADAQAA 168

Query: 185 LALVWLIREK 194
           + +V  +  +
Sbjct: 169 MDVVRAVGRR 178


>gi|113970108|ref|YP_733901.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4]
 gi|113884792|gb|ABI38844.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4]
          Length = 229

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 51/199 (25%), Gaps = 30/199 (15%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G       R  +   V +  Q +               +  +      T
Sbjct: 28  NTLVVLDFETSGLSPNQGARAIEIGAVLI-EQGQITARFSELM---NPGFRINSFIEDYT 83

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ Q         AE   R   F        +  +N  FD  +    F +  +      
Sbjct: 84  GISNQMLAHA-APCAEVMARFAAFIGKH---HLVAHNAAFDQRFLDAEFAQIGH------ 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
                              F    +        A + +L  L     +      H A AD
Sbjct: 134 --------------HYPGQFGCSLLLARRLYPEAINHQLATLVRHKQLPSDGTFHRALAD 179

Query: 181 VYATLALVWLIREKKPKLF 199
              T  L   +     + +
Sbjct: 180 AEMTGHLWLRMLADLKQGY 198


>gi|330991910|ref|ZP_08315859.1| DNA polymerase III polC-type [Gluconacetobacter sp. SXCC-1]
 gi|329760931|gb|EGG77426.1| DNA polymerase III polC-type [Gluconacetobacter sp. SXCC-1]
          Length = 309

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 32/187 (17%)

Query: 7   IYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
             D ET G   A D   +F  V      + + + + E F           P+   +TGIT
Sbjct: 57  FLDLETTGLSAAKDEIIEFGIVPFVYTLEGKILGTLEPFSRLREPSCPIPPQITALTGIT 116

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P       V   E +  +          +I  +N  FD  ++                  
Sbjct: 117 PDMVAGQRVTADEVAGFV------APASLIIAHNANFDRKFAEA---------------- 154

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                     +     ++          +G    KL  L +  G      H A  D  A 
Sbjct: 155 -------FSPVFTTKPWACSMRDVDWAAEGYEGRKLSYLGMQAGFWFDG-HRAVDDCQAG 206

Query: 185 LALVWLI 191
           +A++  +
Sbjct: 207 IAILDRV 213


>gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 855

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 25/217 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V++D E+ G +   D   Q AG++++ + E IES + F   P        ++  + G
Sbjct: 493 ENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLI-PKKSV---GDSYLVHG 548

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + Q    +G  +    +   +F       +I  +N+ FD     +   R   +   +  
Sbjct: 549 FSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVTFDISILNSELERLSLEKASFK- 604

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               + +D LD+ R  Y                T+ KL+ L+     E  ++HDA  D+ 
Sbjct: 605 ----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           AT  ++  + ++K K             ++K   I  
Sbjct: 648 ATKDVLMAMLKEKVKPTIINRMVVYGKYIKKFQPIYK 684


>gi|162449983|ref|YP_001612350.1| exonuclease [Sorangium cellulosum 'So ce 56']
 gi|161160565|emb|CAN91870.1| exonuclease [Sorangium cellulosum 'So ce 56']
          Length = 298

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 52/187 (27%), Gaps = 29/187 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D E  G     DR  +    R        E       +P            + GI 
Sbjct: 33  LVFLDLEMTGLRPESDRVIEVCAERTRGDA--CEDAITSLVRPEPGVF---GNAHVHGID 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P++        AE   RI Q        ++  +   +D  +      R         +  
Sbjct: 88  PRELAGAP-TFAELCDRIDQVTE---GAVLVAHAAAWDVAFLEAELARAGRARRLPHY-- 141

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R  +A                S  L  L    G+    AH A+ DV+A 
Sbjct: 142 ----LDTLVLSRRAFAL--------------PSHSLASLCRELGVHRERAHRAEDDVHAL 183

Query: 185 LALVWLI 191
            A+   I
Sbjct: 184 RAVFRKI 190


>gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155]
 gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155]
          Length = 242

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           VI D ET G +          R  +   V V             +         DPEA+ 
Sbjct: 11  VILDTETTGMNQGSGAIYLGHRIIEIGCVEV-VNRRLTGRYYHQY--INPGQAIDPEAIA 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT ++  ++     + ++    F    +   I  +N  FD  +  + F  +      
Sbjct: 68  VHGITDERVSKEPRFH-QVAQDFINFI---DGAEIVAHNANFDVSFMDHEF--SLLQPRG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
               +     D L + + ++    +               L  L    G++      H A
Sbjct: 122 PKTADICQILDTLVIAKFLHPGQKN--------------NLDALCKRYGVDTSRREYHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  ++   + K 
Sbjct: 168 LLDAEILADVYLIMTGGQTKF 188


>gi|121635139|ref|YP_975384.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18]
 gi|120866845|emb|CAM10604.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18]
 gi|325132197|gb|EGC54893.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M6190]
 gi|325138130|gb|EGC60703.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis ES14902]
 gi|325198587|gb|ADY94043.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis G2136]
          Length = 470

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 62/205 (30%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V               V +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVVGLTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRVGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
               +L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPVLCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207


>gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 386

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 46/192 (23%), Gaps = 29/192 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    V  D ET G      R  +   V V      +                      +
Sbjct: 11  LAEPIVFVDLETTGGSTNEHRITEVGVVEVGPTG--VTRWSSL---VDPQQPIPSFIQQL 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT            E      + F+  +  +   +N  FD  + R  F R        
Sbjct: 66  TGITNAMVRGAPT--FEAIA--PELFARLDGKLFVAHNASFDRGFLRGEFRRVGISFDP- 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+L  +R   A                   L  L   + +   + H A AD
Sbjct: 121 ---------DVLCTVRLSRALF----------PSEKRHGLDALVERHALVPSDRHRALAD 161

Query: 181 VYATLALVWLIR 192
                     + 
Sbjct: 162 ADLIWQFWQRLH 173


>gi|319426278|gb|ADV54352.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200]
          Length = 212

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 53/229 (23%), Gaps = 37/229 (16%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G       R  +   V +       +            +         T
Sbjct: 11  NTLVVLDFETSGLSPNQGARAIEIGAVLI-ENGVITQRFSELM---DPGFRISTFIEDYT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ Q          E   R   F        +  +N  FD  +    F           
Sbjct: 67  GISNQMLRNAAPCH-EVMARFADFI---GDNHLVAHNAAFDQRFLDAEFAH------IHH 116

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
              G     LL   R     S   +    R     +             +   H A AD 
Sbjct: 117 QYQGQFACSLLLARRLYPLASNHQLATLVRYKQLPN-------------NGTFHRALADA 163

Query: 182 YATLALVWLIREKKPKLFEYL---------YDYRNKNQLRKLIDIQNMT 221
             T  L   +     + F               + K  + K I   +  
Sbjct: 164 EMTGHLWLAMLADLQRDFAITSPPFSLMQKITQKTKADVAKFIRQYSAK 212


>gi|120437353|ref|YP_863039.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
 gi|117579503|emb|CAL67972.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
          Length = 1461

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 67/204 (32%), Gaps = 30/204 (14%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D     IE+ + +  +P    +P 
Sbjct: 2   YLIFDTETTGLPKNWNAPLTDSDNWPRCIQIAWQVHDEMGNLIENQD-YLVQPDGFDIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            ++  I GI+   A   GV   E   + +          +   N+ FD       F R  
Sbjct: 61  -DSERIHGISTDLAKEQGVPLDEVLEKFNIALQKSK--FVVGQNVGFDLNIMGAEFIRRD 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
           +++              + V+      + +  + P    G   FKL  L           
Sbjct: 118 FEN----------SLQEMPVLDTCTEVTANLCKIPGGRGGK--FKLPTLTELHEFLFEEA 165

Query: 171 HVNAHDAKADVYATLALVWLIREK 194
              AH+A ADV AT      +  +
Sbjct: 166 FGEAHNATADVEATTRCFLELIRQ 189


>gi|325269993|ref|ZP_08136602.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
           16608]
 gi|324987716|gb|EGC19690.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
           16608]
          Length = 896

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 86/267 (32%), Gaps = 39/267 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAV 58
            V++D ET G DV  D   + A +R+ +  E I      + +     LP      +P   
Sbjct: 514 IVVFDTETTGLDVFSDDIIEIAAIRI-KGGEIIGDPLDLYIETDKPILPKLGDKENPMYS 572

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
                  + A    +  A+  +R   +     T  +  +N  +D     N   R      
Sbjct: 573 IYH---AKMAADRLLAPADALQRFLAYI---GTRPVLGHNASYDYNIIDNCLKR---YCN 623

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                +GN  +D L ++R +                  S+KL+ L     ++ VN+H A 
Sbjct: 624 DTMQTHGNRCFDSLKLIRLLAPGLH-------------SYKLESLLETFRLKGVNSHRAI 670

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
            DV AT++LV L   K  +       +    ++R   D                      
Sbjct: 671 DDVRATISLVHLCARKASEKQAKQTAFLRHPKVRPFADA----------LRRNYGEWYQE 720

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVF 265
            +  +       +  +   LS     F
Sbjct: 721 AVGRLYRRSNNHEPALAKELSSTYDCF 747


>gi|330445182|ref|ZP_08308834.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489373|dbj|GAA03331.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 241

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
              +++D ET G +         R  +   V +    +       F      D   DPEA
Sbjct: 6   QRIIVFDTETTGMNMSGPHYEGHRIIEIGAVEI-INRKLTG--NTFHVYIKPDRPIDPEA 62

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + + GIT +  +      AE  +    F    +   +  +N  FD  +    F     D 
Sbjct: 63  IDVHGITDEFLVGKP-SYAEIHQEFIDFI---DGAELVAHNASFDIGFMDYEFQLMGSDL 118

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAH 175
            +    +     D L++ + ++                    L  L    GI+  H   H
Sbjct: 119 KKTE--DICKVTDTLEMAKRLFPG--------------KRNNLDILCSRYGIDNSHRTLH 162

Query: 176 DAKADVYATLALVWLIREKKPK 197
            A  D      +  ++   +  
Sbjct: 163 GALLDAEILADVYLMMTGGQTS 184


>gi|254499192|ref|ZP_05111872.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
 gi|254351582|gb|EET10437.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
          Length = 232

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 65/211 (30%), Gaps = 29/211 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G       R  +   V  +DR+         F      + L D  A  + GI
Sbjct: 4   IVLDTETTGIGHEQGHRVIEIGCVELIDRKL--TGRH--FHVYLNPERLVDEGAFRVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      +    F+ ++ +F        +  +N  FD  +  +      +      + 
Sbjct: 60  SDEFLQDKPL----FADKVSEFLQFVGGAELIIHNAAFDMGFLNSELRHVQWKKKLEDY- 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                +D L   R  +    +               L  L    GI+H N   H A  D 
Sbjct: 115 --CDVFDTLTYARDKFPGQRN--------------SLDALCKRFGIDHFNRQLHGALLDA 158

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
                +   +   +  LF  + +  N   ++
Sbjct: 159 EILAFVYLAMTGGQSSLFADVEENANNTTVK 189


>gi|170695448|ref|ZP_02886593.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170139639|gb|EDT07822.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 247

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 59/205 (28%), Gaps = 27/205 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   LILDTETTGLNARTGDRILELGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+ + +I  F    +  I   +N  FD  +    F              
Sbjct: 61  TEFLSDKPK-FADIADQIRDFIQGADLII---HNAPFDIGFLDAEFALLGLPPVS---TY 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 114 CGEIIDTLARAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207
               +   +   +  L   +    +
Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGESH 184


>gi|146293210|ref|YP_001183634.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32]
 gi|145564900|gb|ABP75835.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32]
          Length = 212

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 59/230 (25%), Gaps = 39/230 (16%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G       R  +   V +       +            +         T
Sbjct: 11  NTLVVLDFETSGLSPNQGARAIEIGAVLI-ENGVITQRFSELM---DPGFRISSFIEDYT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ Q          E   R   F        +  +N  FD  +    F           
Sbjct: 67  GISNQMLRNAAPCH-EVMARFADFI---GDNHLVAHNAAFDQRFLDAEFAH-----IHHE 117

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180
           +    +    L + R +Y  +             ++ +L  L     +  +   H A AD
Sbjct: 118 YQGQFA--CSLLLARRLYPLA-------------SNHQLATLVRYKQLPNNGTFHRALAD 162

Query: 181 VYATLALVWLIREKKPKLFEYL---------YDYRNKNQLRKLIDIQNMT 221
              T  L   +     + F               + K  + K I   +  
Sbjct: 163 AEMTGHLWLAMLADLQRDFAITSPPFSLMQKITQKTKADVAKFIRQYSAK 212


>gi|110597891|ref|ZP_01386173.1| Exonuclease [Chlorobium ferrooxidans DSM 13031]
 gi|110340468|gb|EAT58954.1| Exonuclease [Chlorobium ferrooxidans DSM 13031]
          Length = 189

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++ +D E+ G                R  Q A +  D    +  S   F  +P    +P 
Sbjct: 2   YLFFDTESTGLPRNWKAPVTDLGNWLRLVQLAYLSFDGVGNQTGSGN-FIVRPEGFSIP- 59

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           PEA  I GI+  +AL +G+         +          +  +N+ FD+      F R  
Sbjct: 60  PEAAAIHGISTAQALAEGLELKRVMEEFYAEVERAE--WLVAHNMSFDEKILGAEFLRLG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
             +             + + +      +  G +WP   +                +   +
Sbjct: 118 MPNIL---LAKKKICTMQESVDFCAIKNSYGNKWPKLSELHQKL--------FNCDFQES 166

Query: 175 HDAKADVYATLALVWLIRE 193
           H+A  DV  T    W ++ 
Sbjct: 167 HNASVDVAVTAKCFWELKR 185


>gi|144900310|emb|CAM77174.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 459

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 53/183 (28%), Gaps = 25/183 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G D A D       VR      +I    +              A  I GI  
Sbjct: 258 VVLDTETTGLDAARDAIVSVGAVRC--HGSRIYRAAMLDLLVNPGRRIPARATAIHGIDE 315

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      + +  + +  ++ +  ++  + I FD    R+   R   D         
Sbjct: 316 SMVAGKP----DLAASLPEIAAIMDKAVVVGHQIGFDLALLRHGTERLGLDW------TP 365

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
             R D+L +               +     +  ++ D A   G+     H A  D   T 
Sbjct: 366 PPRLDILLLS-------------AALAPDESGHEIDDQAARMGVNISGRHTALGDALVTA 412

Query: 186 ALV 188
            L 
Sbjct: 413 ELW 415


>gi|89890222|ref|ZP_01201732.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7]
 gi|89517137|gb|EAS19794.1| DNA  polymerase III, epsilon subunit [Flavobacteria bacterium
           BBFL7]
          Length = 466

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 64/207 (30%), Gaps = 30/207 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G  +  +R  +   VR+      ++           + L       +TGI 
Sbjct: 8   YCVVDIETTGNRMTGNRMTEICIVRMRGD-TILDKYSSL---IDPEVLIPDYITTLTGID 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V  A+ +  I  F       I   +N+ FD    RN F R  +D  R     
Sbjct: 64  NAMVASAPV-FADVAEEILNFTKD---YIFVAHNVNFDYNVLRNEFKRLHHDFKRKK--- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L  L    GI  +N H A+ D  AT
Sbjct: 117 -------LCTVRLSREL----------IPGMRSYSLGKLCDDIGIPLINRHRAEGDTDAT 159

Query: 185 LALVWLIREKKP--KLFEYLYDYRNKN 209
           + L   +        +F        K 
Sbjct: 160 VILFQKLITIDQEGDIFNKFIKGNFKE 186


>gi|262194304|ref|YP_003265513.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077651|gb|ACY13620.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 55/190 (28%), Gaps = 19/190 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V  D ET G D       + A +RV  Q    E   V   +P      DPEA+ + 
Sbjct: 1   MQPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVN 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G   +      V   +    +          ++  +N+ FD  +    +    +      
Sbjct: 61  GYRRRVWADA-VSLGDAMAELAPMLE---GAVLAGHNVAFDRRFLEAAWDYVGHRP---- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N     LD     +     G           S  L  +    G+     H A  DV
Sbjct: 113 ---ENLDHHALDTAALAFPLLMAG--------EIDSLSLTPVCAHLGVLRGEEHWAFDDV 161

Query: 182 YATLALVWLI 191
            A L +   +
Sbjct: 162 RACLGVARRL 171


>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
 gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
 gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
          Length = 331

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  RVD + E  +           +  P P  V+I G+T
Sbjct: 19  YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   E +  + +     +  ++  +N  FD       + R    +       
Sbjct: 73  SEVLEGAPL-FPEIAEELSRRL---DGRVLVAHNAVFDWSMLAREYARAGITAPVR---- 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   + + + +                  + KL+ LA   G+E   AH A  D    
Sbjct: 125 --RRLCTIALAKELAL-------------PLPNHKLETLAAHFGVEQRRAHHALDDARVL 169

Query: 185 LALVW 189
                
Sbjct: 170 AEAFR 174


>gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 466

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 52/188 (27%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G     DR  +   ++        +  +V+                +TGI+
Sbjct: 11  LAFVDIETTGSHFDRDRITEIG-IKTLAN----DGIQVWERLINPQTFIPQNIQRLTGIS 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ          + ++ + Q        I   +N RFD  + +  F R   D        
Sbjct: 66  PQMVEGQP-SFDQVAKELKQELE---GKIFVAHNARFDYGFIKASFKRVGIDFKPK---- 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +L  ++                       L  +  A+G++    H A  D    
Sbjct: 118 ------VLCTVKLSRLLF----------PEQPRHNLDTIINAHGLQVSARHRALGDADLL 161

Query: 185 LALVWLIR 192
           L    +  
Sbjct: 162 LQFWRVCE 169


>gi|120598713|ref|YP_963287.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|120558806|gb|ABM24733.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
          Length = 212

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 59/230 (25%), Gaps = 39/230 (16%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G       R  +   V +       +            +         T
Sbjct: 11  NTLVVLDFETSGLSPNQGARAIEIGAVLI-ENGVITQRFSELM---GPGFRISSFIEDYT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ Q          E   R   F        +  +N  FD  +    F           
Sbjct: 67  GISNQMLRNAAPCH-EVMARFADFI---GDNHLVAHNAAFDQRFLDAEFAH-----IHHE 117

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180
           +    +    L + R +Y  +             ++ +L  L     +  +   H A AD
Sbjct: 118 YQGQFA--CSLLLARRLYPLA-------------SNHQLATLVRYKQLPNNGTFHRALAD 162

Query: 181 VYATLALVWLIREKKPKLFEYL---------YDYRNKNQLRKLIDIQNMT 221
              T  L   +     + F               + K  + K I   +  
Sbjct: 163 AEMTGHLWLAMLADLQRDFAITSPPFSLMQKITQKTKADVAKFIRQYSAK 212


>gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 484

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 56/192 (29%), Gaps = 29/192 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G     DR  + A +R D       +   +      +    P    +TGI  +
Sbjct: 45  IVDLETTGGSFDTDRITEIAFLRFDG-----GTVTPYHSLVHPERPIPPFIRRLTGIGDE 99

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    +  +  +         CI+  +N +FD  + R  F R              
Sbjct: 100 TVAGAP-PFSALAHELLPLLR---GCILLAHNSKFDYTFLRRAFARCGLPFAA------- 148

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L+ +   +GI   + H A  DV A   
Sbjct: 149 ---PTLCTVQLSRRLYPQFYK----------HSLESIIERHGIAAASRHRATDDVLAVAD 195

Query: 187 LVWLIREKKPKL 198
            +     ++   
Sbjct: 196 YLETALREQGSE 207


>gi|300773554|ref|ZP_07083423.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759725|gb|EFK56552.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 316

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 28/224 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +      +D ET G ++ LDR  + + ++V     K    EV   +         E+   
Sbjct: 5   LKRPLAFFDLETTGVNIPLDRIVEISILKVMPDGNK----EVLTRRINPGMPIPAESSMF 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E  + I  F    +  + GYN+ +FD       F R   D    
Sbjct: 61  HGIYDEDVKDLP-SFKELGQEIADFIGDAD--LAGYNSNKFDVPMLMEEFLRANVDF--- 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
               G +  D+ ++   +   +                           +  NAH A+AD
Sbjct: 115 -SLEGRNFVDVQNIFHQMEQRTLK----------------AAYKFYCDQDLNNAHTAEAD 157

Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
           V AT  ++   +   +  L+E  +  ++K  +  +  +   T L
Sbjct: 158 VTATYEVLKAQLSRYEDVLYEDKHGNKSKPVVNDVAALHEFTNL 201


>gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 470

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 30/198 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                  D ET G + A DR  +             +  E +      +         +T
Sbjct: 7   PQRLAFVDLETTGANAARDRVTEI-----GVVVVDGDRVETWSTLVNPERAIPQFIQQLT 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +         A  +  + +     +  +   +N RFD  + ++ + R         
Sbjct: 62  GISNEMVADAP-TFARVADELAERL---DGRLFIAHNARFDYGFLKHEYQRLGR------ 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180
                 R D+L  +R      P+  +            L  L   +G+    + H A AD
Sbjct: 112 ----RFRADVLCTVRLSRRLFPEHYR----------HNLDSLIARHGLATEGDRHRALAD 157

Query: 181 VYATLALVWLIREKKPKL 198
                     ++ +    
Sbjct: 158 ADLIWQFWRTLQREHEAQ 175


>gi|24373798|ref|NP_717841.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
 gi|24348190|gb|AAN55285.1|AE015666_9 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
          Length = 212

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 53/199 (26%), Gaps = 30/199 (15%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G       R  +   V +  Q +               +  +      T
Sbjct: 11  NTLVVLDFETSGLSPNQGARAIEIGAVLI-EQGQITTRFSELM---NPGFRINAFIEDYT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ Q         AE   R  +F        +  +N  FD  +    F    +      
Sbjct: 67  GISNQMLAHA-APCAEVMARFAEFIGKH---HLVAHNAAFDQRFLDAEFAHIGH------ 116

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180
                         +    F    +        A + +L  L     +  +   H A AD
Sbjct: 117 --------------QYSGQFGCSLLLARRLYPEAINHQLATLVRHKQLPNNGTFHRALAD 162

Query: 181 VYATLALVWLIREKKPKLF 199
              T  L   +     + F
Sbjct: 163 AEMTGHLWLRMLADLKQDF 181


>gi|117619304|ref|YP_856106.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 244

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 32/200 (16%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +I D ET G + A        R  +   V V    +   +   F      D L DPEA+ 
Sbjct: 10  IILDTETTGMNTAGGPVYLGHRIIEIGCVEV-INRKLTGNH--FHVYIKPDRLVDPEAIQ 66

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +         ++ +    +F        +  +N  FD  +    F +   +   
Sbjct: 67  VHGITDEFLRDKP-SFSQIADEFIEFIRGAE---LIAHNAPFDVSFMDYEFGKLGLNFKT 122

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177
               +     D L + R ++                    L  L    GI+  H   H A
Sbjct: 123 ---ADICGITDTLAMARDLFPG--------------KRNNLDVLCDRYGIDNSHRTLHGA 165

Query: 178 KADVYATLALVWLIREKKPK 197
             D      +  L+   + K
Sbjct: 166 LLDAEILADVYLLMTGGQTK 185


>gi|240144403|ref|ZP_04743004.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis
           L1-82]
 gi|257203586|gb|EEV01871.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis
           L1-82]
          Length = 235

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V+ D E  G +   D   +   VRV R  + ++      C+   +     +   +T
Sbjct: 1   MQDYVVIDLEMTGLNAKTDHILEVGAVRV-RNHQAVDKFGAILCQ---NVKIPEKVTELT 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT       G+ + E  R+  +F       II   N+ FD  + +     +        
Sbjct: 57  GITEAMVQG-GMEKEEAMRQFFEFI---GEDIIVGQNVIFDYGFLKQWAVNHNMP----- 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                S  D L + R                       L+ L    G++  NAH A  D 
Sbjct: 108 --LERSAVDTLKLARKF-------------LPKEQKKDLESLCAYFGVKRENAHRAFDDA 152

Query: 182 YATLALVWLIREKKPKL 198
           Y T  +   +RE+  + 
Sbjct: 153 YETWQIYEALRERYEEE 169


>gi|150024446|ref|YP_001295272.1| DNA polymerase III, alpha and epsilon subunits [Flavobacterium
           psychrophilum JIP02/86]
 gi|149770987|emb|CAL42454.1| Probable DNA polymerase III, alpha and epsilon subunits
           [Flavobacterium psychrophilum JIP02/86]
          Length = 1508

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 69/198 (34%), Gaps = 30/198 (15%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G   +            R  Q A    D     I   + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPRSWSAPITDTNNWPRCIQIAWQLHDEMGNLI-EHQDYLIKPEGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A+  GV   E   + +   S   T  I   N+ FD       FYR  
Sbjct: 61  -DAERIHGISTELAIEQGVSLQEVLEQFNIALSK--TKFIVGQNVGFDVNIMGCEFYRA- 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
                    N +S    + V+      +   ++ P    G   FKL  L         I 
Sbjct: 117 ---------NISSDMVKMPVLDTCTEVTASLLKLPGGRGGR--FKLPTLTELHQYLFQIP 165

Query: 171 HVNAHDAKADVYATLALV 188
              AH+A ADV AT    
Sbjct: 166 FSEAHNATADVEATTRCF 183


>gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
 gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
          Length = 244

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 76/230 (33%), Gaps = 33/230 (14%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +I D ET G + A        R  +   V V    +   +    + KP  D L DPEA+ 
Sbjct: 10  IILDTETTGMNTAGGPVYLGHRIIEIGCVEV-INRKLTGNHYHVYIKP--DRLVDPEAIQ 66

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +         ++ +    +F        +  +N  FD  +    F +   +   
Sbjct: 67  VHGITDEFLRDKP-SFSQIADEFLEFIRGAE---LIAHNAPFDVSFMDYEFSKLGLNFKT 122

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177
               +  +  D L + R ++                    L  L    GI+  H   H A
Sbjct: 123 ---ADICTITDTLAMARDLFPG--------------KRNNLDVLCDRYGIDNSHRTLHGA 165

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRN-KNQLRKLIDIQNMTPLVHV 226
             D      +  L+   + KL        N  NQ   +  +++  P + V
Sbjct: 166 LLDAEILADVYLLMTGGQTKLNLATESNENENNQDTSIRRLESNRPAIKV 215


>gi|304408611|ref|ZP_07390232.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|307305439|ref|ZP_07585187.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
 gi|304352432|gb|EFM16829.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|306911742|gb|EFN42167.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
          Length = 242

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           VI D ET G +          R  +   V V             +         DPEA+ 
Sbjct: 11  VILDTETTGMNQGSGAIYLGHRIIEIGCVEV-VNRRLTGRYYHQY--INPGQTIDPEAIA 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT ++  ++     + ++    F    +   I  +N  FD  +  + F  +      
Sbjct: 68  VHGITDERVSKEPRFH-QVAQDFINFI---DGAEIVAHNANFDVSFMDHEF--SLLQPRG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
               +     D L + + ++    +               L  L    G++      H A
Sbjct: 122 PKTADICQILDTLVIAKFLHPGQKN--------------NLDALCKRYGVDTSRREYHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  ++   + K 
Sbjct: 168 LLDAEILADVYLIMTGGQTKF 188


>gi|303246654|ref|ZP_07332932.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans
           JJ]
 gi|302491994|gb|EFL51872.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans
           JJ]
          Length = 240

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 54/201 (26%), Gaps = 17/201 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D E  G D           VR+            FF           +A  I G+T
Sbjct: 43  FVVVDTELTGFDPRRHAMVAIGAVRLRGLTLLPGE--SFFSLVRPSRDVPRDASLIHGLT 100

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E +  +  F       II  +++  D  +      R         +  
Sbjct: 101 DAALADAP----ETAETLAAFLDFLGPAIIVGHHVELDMAFINAASRR---------YFG 147

Query: 125 GNSRWDLLDVMR--AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           G      +D +R    Y       Q    D     F L  L    G+    AHDA  D Y
Sbjct: 148 GELAAPCIDTLRLALTYEEKRQMGQGGQGDFERLEFDLASLCRRYGLPPFAAHDALGDAY 207

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               L   +  K  +      
Sbjct: 208 GAAYLFLYLARKSARGRPLTL 228


>gi|308049484|ref|YP_003913050.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
 gi|307631674|gb|ADN75976.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
          Length = 249

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 12/187 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +   D       V   +Q  + + +  +   P      + E+V I GIT
Sbjct: 59  FVALDFETTGMNPDQDAIISIGLVPFTQQRIQCKGSAHWIVNPN--RPLNEESVVIHGIT 116

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                +   +E     ++    +     I+  +  + +  +          +  R     
Sbjct: 117 HSDLEQAPDLEV-VLDQVLDALA---GKIVVVHYKQIEREFLDRALRARLGEGIR----- 167

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D LD+  AI   +  G     R     S +L       G+     H A  D  AT
Sbjct: 168 -FPVVDTLDIEAAIQHRACQGWFNRLRGKKPDSVRLGRARERYGLPAYQPHHALTDALAT 226

Query: 185 LALVWLI 191
             L+   
Sbjct: 227 AELLQAQ 233


>gi|150377384|ref|YP_001313979.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
 gi|150031931|gb|ABR64046.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium medicae
           WSM419]
          Length = 308

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 81/282 (28%), Gaps = 32/282 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +I D ET G +   D   +   V    D      +  +++           PE   +TGI
Sbjct: 56  LILDTETTGLNHRKDEIIEIGAVAFTFDDAGNIGDVIDLYGGLQQPSISVPPEITRLTGI 115

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L   +        +          +I  +N  FD  +                  
Sbjct: 116 TDEMVLGQKIDLHRLRAVVE------PADLIIAHNAGFDRPFCEAFSPI----------- 158

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                       R  +A S   I WP+R    T  KL  L    G  H   H A  D +A
Sbjct: 159 ----------FARKAWACSVSEIDWPARGFEGT--KLGYLIGQAGYFHEG-HRAVDDCFA 205

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
            L ++   R +  +         ++    +L    +   +       G   S+ +   P 
Sbjct: 206 LLEVLAQGRAEVERSPFAELYGASQRSRIRLFAENSPFDMKEHLKARGYRWSDGSDGRPK 265

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK 285
           +W     +  +   L          +      R  T+ D  K
Sbjct: 266 SWWIEIAEEALDDELHYLRSEIYRWNEADPPIRRLTAFDRFK 307


>gi|319780604|ref|YP_004140080.1| DNA polymerase III, subunit epsilon [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166492|gb|ADV10030.1| DNA polymerase III, epsilon subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 233

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 27/185 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +  GV +  ++     T   +  P        EA  + GI+ 
Sbjct: 4   IIFDTETTGLDSRDDRVIELGGVELVNRF-PTGRTFHHYINPQ-GRAIHVEAQAVHGISA 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                       F+  + ++    +   +  +N  FD  +    F R  +        + 
Sbjct: 62  ADLAGKPT----FAEIVQEWLDFTDGAKLVAHNATFDVGFLNVEFGRLGHPVI-----DN 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183
               D L + R  +   P+               L  L    GI++     H A  D   
Sbjct: 113 GVVVDTLALARRKHPMGPN--------------SLDALCRRYGIDNTKRTKHGALLDSEL 158

Query: 184 TLALV 188
              + 
Sbjct: 159 LAEVY 163


>gi|311696841|gb|ADP99714.1| exonuclease, RNase T and DNA polymerase III [marine bacterium HP15]
          Length = 242

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 61/194 (31%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G D           V       ++     +  +P         ++ I GIT
Sbjct: 52  FVALDFETTGLDANQHSIVSIGLVPFTLDGIQLGKARHWIVRPK--LPLHQTSITIHGIT 109

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                +      + +  +   F+  N  I   +              R+F+D        
Sbjct: 110 HSDIDQAP----DLNDILKDLFACLNGRIPVVH---------YRNIERSFFDVALQWRLG 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
              R+ L+D M       PD    +W         S +L D  L  G+ H  AH+A  D 
Sbjct: 157 EGIRFPLIDTMAIEAHLHPDRNPSRWQQLLGKKPVSIRLADSRLRYGLPHYAAHNALIDA 216

Query: 182 YATLALVWLIREKK 195
            AT  L+       
Sbjct: 217 VATAELLQAQVLHH 230


>gi|260592337|ref|ZP_05857795.1| exonuclease [Prevotella veroralis F0319]
 gi|260535724|gb|EEX18341.1| exonuclease [Prevotella veroralis F0319]
          Length = 283

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 79/268 (29%), Gaps = 24/268 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   +++D ET G D+  DR  Q + ++V    +  E  E FF               +
Sbjct: 5   LTKPLIVFDLETTGLDLVADRIIQISYIKVYADGK--EERENFF--INPGKHIPTIVTEL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ +          + ++ +   F+       G+N+ RFD       F R   D    
Sbjct: 61  TGISDEDVADAP-TFKQKAKELADKFA--GCDFAGFNSNRFDVPMLAEEFLRAGIDFDFS 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK------------LQDLALANG 168
                +++     + R   A +         ++   + +              ++A+   
Sbjct: 118 KCRLIDAQNIYHKMERRNLAAAYKFYCGRKMEEDFVAHRADQDTEATWRVLQGEVAMYAP 177

Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
                      D+        +             D ++K+    L              
Sbjct: 178 GNQEEERALNNDMDELAEFSRMNDFVDFAGRIVWEDMKDKDGKTLLDATGKARK----HE 233

Query: 229 MFGASRSNTALIA-PVAWHPRYKDSVIG 255
           +F   +     +A  +   P Y   ++ 
Sbjct: 234 VFNFGKYKGWDVAEVLHKDPGYYSWMLA 261


>gi|327402957|ref|YP_004343795.1| DNA polymerase III subunit alpha [Fluviicola taffensis DSM 16823]
 gi|327318465|gb|AEA42957.1| DNA polymerase III, alpha subunit [Fluviicola taffensis DSM 16823]
          Length = 1463

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 75/237 (31%), Gaps = 30/237 (12%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           F+I+D ET G     +          R  Q A    D     I   + +  +P    +P 
Sbjct: 2   FLIFDTETTGLPRDWNAPLTDLDNWPRAIQIAWQLHDELGNLI-EAKDYLIRPDGFDIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + AL  G    +     ++         +   NI FD       F R  
Sbjct: 61  -DAERIHGISTELALEQGQDLEDVIAEFNEVLRKSQ--FVVGQNIGFDLNIMGAEFLRT- 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
                 +  +     D    +      + +  + P    G   FKL  L         + 
Sbjct: 117 ---QVATNMHDLPVLDTCTEV------TANLCKIPGGRGGK--FKLPTLTELHSFLFNVP 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
              AH+A ADV AT    + +  ++    E L          K+ +   + P+    
Sbjct: 166 FGEAHNATADVEATTRCFFELVRREVFTAEELKVELEFFNRFKIANPDFIQPIGLTH 222


>gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 855

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 25/186 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V++D E+ G ++  D   Q AG++++ + E IES + F   P        ++  + G
Sbjct: 493 ENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLI-PKKSV---GDSYLVHG 548

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + Q    +G  +    +   +F       +I  +N+ FD     +   R          
Sbjct: 549 FSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVTFDISILNSELERLSL-----EK 600

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N  + +D LD+ R  Y                T+ KL+ L+     E  ++HDA  D+ 
Sbjct: 601 ANFKTYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647

Query: 183 ATLALV 188
           AT  ++
Sbjct: 648 ATKDVL 653


>gi|90021666|ref|YP_527493.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
 gi|89951266|gb|ABD81281.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
          Length = 238

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 26/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +   R  +   V +    +        + KP  +   D  A+ + GIT
Sbjct: 4   IVLDTETTGLEPSQGHRIIEIGCVEL-INRKLTGRHYHQYIKP--EREIDEGAIEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V   + +     F    +   +  +N  FD  +  + F  N         ++
Sbjct: 61  NEFLADKPV-FKDIADEFMAFV---DGAELVIHNAPFDVGFLNHEF--NLLGRGSTVIND 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
             S  D L + R  +    +               L  L    G ++   + H A  D  
Sbjct: 115 RCSILDTLALARNKHPGQKN--------------NLDALCKRYGADNSARDLHGALLDAE 160

Query: 183 ATLALVWLIREKKPK 197
               +  L+   +  
Sbjct: 161 ILADVYLLMTGGQTN 175


>gi|242309952|ref|ZP_04809107.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT
           98-5489]
 gi|239523249|gb|EEQ63115.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT
           98-5489]
          Length = 247

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 31/189 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFIT 61
             F I D ET G +  L +P +   +   +     +  + F FC              IT
Sbjct: 69  QKFCIVDIETNGHNPFLHQPIEIGAILY-QNGMVQKEFQSFVFC-----EEIPEYITKIT 122

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            IT +       +  +       F      C+   +N+ FD  +  N  +   +      
Sbjct: 123 NITTEMLRNAPPIH-QVLESFRIFL---GDCVFVAHNVGFDYGFLSNSLHHYGFGYLYNP 178

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                               S   I+   +   A  + L+ L     I H   H A  D 
Sbjct: 179 --------------------SLCTIKLAQKTFQAPRYSLEFLNGFLNINHSPLHRALEDA 218

Query: 182 YATLALVWL 190
              L +   
Sbjct: 219 KVALEVFKT 227


>gi|110637752|ref|YP_677959.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280433|gb|ABG58619.1| DNA polymerase III epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 283

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 26/195 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
                +D ET G +++ DR  +   VRV       E  EV   +         ++  I G
Sbjct: 20  KPIAFFDLETTGVNISTDRIIEICIVRVSP---PDEKVEVKTFRVNPGMPIPDQSSAIHG 76

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  +          E + +I+QF    +  + G+N+IRFD       F+R   +      
Sbjct: 77  IYDKDVADKP-TFTEIAHQINQFMKDCD--LGGFNSIRFDIPLLIEEFFRAGIE------ 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                     D+ +     S              ++K          +  NAH A+AD  
Sbjct: 128 ---------FDITKRKLVDSQRIFHLMEPRTLGAAYKF-----YCNKDLENAHSAEADTL 173

Query: 183 ATLALVWLIREKKPK 197
           AT  ++    E+   
Sbjct: 174 ATYYILKAQIERYAD 188


>gi|269104806|ref|ZP_06157502.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161446|gb|EEZ39943.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 249

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 55/197 (27%), Gaps = 24/197 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK------PADDYLPDPEAV 58
           FV  D ET G D   D+      V          + +  +C+           L + E+V
Sbjct: 59  FVALDLETTGLDSQQDQIISVGLVPF--------TLDRIYCRQSAHWVVNPHRLLNEESV 110

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GIT  +         +    + Q        I+  +    +  +      +   +  
Sbjct: 111 VIHGITDSEVQDAP----DLRVILEQVLQALAGKIVVVHYKNIERGFLNQALLKRLGEGI 166

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                      D LD+  AI      G     +     S +L       G+     H A 
Sbjct: 167 E------FPVVDTLDLEAAIQYRQCRGFFNRLKGKKPGSVRLGHARERYGLPTYQPHHAL 220

Query: 179 ADVYATLALVWLIREKK 195
            D  A+  L+       
Sbjct: 221 TDALASAELLQAQLAYY 237


>gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
 gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
          Length = 855

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 25/217 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V++D E+ G +   D   Q AG++++ + E IES + F   P        ++  + G
Sbjct: 493 ENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLT-PKKFV---GDSYLVHG 548

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + Q    +G  +    +   +F       +I  +N+ FD     +   R   +   +  
Sbjct: 549 FSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVAFDISILNSELERLSLEKASFK- 604

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               + +D LD+ R  Y                T+ KL+ L+     E  ++HDA  D+ 
Sbjct: 605 ----TYYDTLDIARRFY-------------PNLTNHKLETLSKLFNTETKSSHDAMDDIL 647

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           AT  ++  + ++K K             ++K   I  
Sbjct: 648 ATKDVLMAMLKEKVKPTIINRMVVYGKYIKKFQPIYK 684


>gi|319406407|emb|CBI80047.1| DNA polymerase III epsilon chain [Bartonella sp. 1-1C]
          Length = 235

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 71/227 (31%), Gaps = 37/227 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61
           +I+D ET G +   DR  +   +      E +        F         +   E V I 
Sbjct: 4   IIFDTETTGLNKESDRIIEIGCI------EMVNRYLTGRRFHVYLNPQGVVIPDEVVAIH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T ++   +     +    +  F    +   I  +N  FD  +      R         
Sbjct: 58  GLTNERLKDEKK-FDDIVDALLDFI---DGATIVAHNANFDIGFLNAELERVNKPLI--- 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
             N ++  D L + R  +   P+               L  L    GI++ +   H A  
Sbjct: 111 --NSDNVIDTLSIARRRFPMGPN--------------SLDVLCKRFGIDNSHRVLHGALL 154

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
           D      +   +   K  +F   +D      +  + D +N  P + +
Sbjct: 155 DAEILADVYIELIGGKQGIF--SFDNYESCDVMNVQDNKNAFPTIKI 199


>gi|83942021|ref|ZP_00954483.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36]
 gi|83847841|gb|EAP85716.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36]
          Length = 228

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 55/220 (25%), Gaps = 29/220 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +      + +   +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFDPESGDRIVEIGAVELMGH---VATGNTYHQYINPERSMPAEAFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+  +    F        +  +N  FD  +              W    
Sbjct: 61  DDFLRDKPK-FAQIGQDFLDFIGDSK---LVIHNAAFDIKFLNAELKWMGLPQIPWEQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  SP                L  L    GI++ +   H A  D  
Sbjct: 116 ----LDTLAIARKRFPGSPA--------------SLDALCRRFGIDNTSRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
               +   +   +   F        K             P
Sbjct: 158 ILADVYLELIGGRQPDFGLSTKPEKKEGDTTPDWTPKPRP 197


>gi|313677443|ref|YP_004055439.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126]
 gi|312944141|gb|ADR23331.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126]
          Length = 1433

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 60/194 (30%), Gaps = 22/194 (11%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++IYD ET G     +          R  Q A        E +++      KP    +P 
Sbjct: 2   YLIYDTETTGLPKNYNAPLSDADNWPRCVQIAWQLHGANGELLDAQN-HIIKPEGFDIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             A  + GI+ ++A ++G    E             T ++  +NI FD         R  
Sbjct: 61  -NAEKVHGISTERAQKEGKPLIEVLEAFKTILEK--TDVVVGHNISFDISIMGAEMLRKE 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                 +        +       I        +WP+  +              G +  +A
Sbjct: 118 LSETVLTEKPIIDTKEAGTDFCKIPGGRGGKYKWPTLTELHKKL--------FGQDFADA 169

Query: 175 HDAKADVYATLALV 188
           HDA  DV AT    
Sbjct: 170 HDAAYDVDATAKCF 183


>gi|331701432|ref|YP_004398391.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128775|gb|AEB73328.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 945

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 28/204 (13%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              F + D ET G D++ D R  QF+   V    + I++                  V +
Sbjct: 4   KTTFAVVDIETTGTDISADNRTIQFSCCLVSNN-KIIKTFVT---DINPQREVPNRIVQL 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT ++  +      + + +++      N  +   +N+ FD  +  + F R  Y   + 
Sbjct: 60  TGITNERLQKA-KTFDQVAAQLYSLL---NNTVFVAHNVNFDFPFLNSEFQRVGYPELQ- 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    + +D +       P            +S++LQDL+    IEH + H A +D
Sbjct: 115 --------IEAIDTVTLSQILLPTL----------SSYRLQDLSSYFNIEHDHPHTADSD 156

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             AT  L+ ++  +   L +   +
Sbjct: 157 ALATAKLLLILLRQIKMLPKMTLE 180


>gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
 gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
          Length = 855

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 25/217 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V++D E+ G +   D   Q AG++++ + E IES + F   P        ++  + G
Sbjct: 493 ENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLT-PKKSV---GDSYLVHG 548

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + Q    +G  +    +   +F       +I  +N+ FD     +   R   +   +  
Sbjct: 549 FSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVAFDISILNSELERLSLEKASFK- 604

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               + +D LD+ R  Y                T+ KL+ L+     E  ++HDA  D+ 
Sbjct: 605 ----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           AT  ++  + ++K K             ++K   I  
Sbjct: 648 ATKDVLMAMLKEKVKPTIINRMVVYGKYIKKFQPIYK 684


>gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 232

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 53/195 (27%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D A   R  + A V +        +    +     D   D  A+ + GIT
Sbjct: 4   IILDTETTGLDPAQGHRIIEVAAVEM-VNRRLTGNHLHRYV--NPDRDIDAGAMQVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          + +R    F       I   +N  FD  +                   
Sbjct: 61  PEFLQDKPR-FGDIAREFVDFIDGAELII---HNAPFDVGFLNMEL-------------- 102

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
              R   + ++        D +             L  L     +++     H A  D  
Sbjct: 103 ---RLLGMPLLATCCGGVTDTLAMAKALHPGQRNNLDALCKRYAVDNTARTLHGALLDCE 159

Query: 183 ATLALVWLIREKKPK 197
              A+   +   +  
Sbjct: 160 LLAAVYLALTRGQES 174


>gi|219871037|ref|YP_002475412.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165]
 gi|219691241|gb|ACL32464.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165]
          Length = 256

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 30/197 (15%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G +            +   V V            F          D EA+ +
Sbjct: 10  VVLDTETTGMNFNGAPHIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVDAEAMQV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         AE +    +F       I   +N  FD  +  + F  +F  +   
Sbjct: 67  HGITNEMLADKPA-FAEIADEFIEFIKGAELII---HNAPFDVGFIDHEF--SFLPNPPE 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R +Y                    L  L    GI++     H A 
Sbjct: 121 KVAQMCTVTDSLQLARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166

Query: 179 ADVYATLALVWLIREKK 195
            D      +  ++   +
Sbjct: 167 LDAEILADVFLMMTGGQ 183


>gi|239616641|ref|YP_002939963.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505472|gb|ACR78959.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 185

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 54/192 (28%), Gaps = 27/192 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   +V+ D ET G      DR  + A + + R    ++    F                
Sbjct: 1   MNKVYVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVD--LAFHSLVNPQIRIPAYISG 58

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I G+  +    +  + ++   R  ++       II  ++I  D  +              
Sbjct: 59  IHGLKNEDVTSEPTI-SDVFPRFKEYL---GNAIIVGHSIEVDMKFFDIACKEIGTFPLS 114

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             +                     D ++         S+ L +LA    I+    H A  
Sbjct: 115 NQY--------------------IDTLKIAKDLFKEGSYSLAELAKRLKIKDAPTHRALD 154

Query: 180 DVYATLALVWLI 191
           D   T  +   +
Sbjct: 155 DARVTGKVFLAM 166


>gi|156935271|ref|YP_001439187.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533525|gb|ABU78351.1| hypothetical protein ESA_03124 [Cronobacter sakazakii ATCC BAA-894]
          Length = 243

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHRIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFMV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +  +   V    F   +  F        +  +N  FD  +    F        + 
Sbjct: 66  HGISDEFLMNKPV----FGDVVDDFLDYIRGAELVIHNASFDIGFMDYEFGMLNRGIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILADVYLAMTGGQTSI 185


>gi|119503277|ref|ZP_01625361.1| response regulator receiver domain protein (CheY-like) [marine
           gamma proteobacterium HTCC2080]
 gi|119460923|gb|EAW42014.1| response regulator receiver domain protein (CheY-like) [marine
           gamma proteobacterium HTCC2080]
          Length = 239

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 26/199 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
               V+ D ET G +V+   R  +   V +             + +P  D   D  A+ +
Sbjct: 1   MKRQVVLDTETTGLEVSQGHRIIEIGCVEL-INRRLTGRHFHQYIQPERD--IDAGALAV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GITP+            +     F       I   +N  FD  +      R   D    
Sbjct: 58  HGITPEFLADKP-TFDRIANDFVTFIDGAELII---HNAPFDVGFIDAELARFNRDHPST 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           S     S  D L + R+ +    +               L  L     +++ +   H A 
Sbjct: 114 SAL--CSIVDTLTLARSKHPGQRN--------------SLDALCQRYHVDNASRTLHGAL 157

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +  ++   +  
Sbjct: 158 LDAEILADVFLIMTGGQTS 176


>gi|271965325|ref|YP_003339521.1| DNA polymerase III subunit epsilon-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270508500|gb|ACZ86778.1| DNA polymerase III epsilon subunit and related 3'-5'
           exonuclease-like protein [Streptosporangium roseum DSM
           43021]
          Length = 407

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 48/173 (27%), Gaps = 28/173 (16%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G   +  DR  +   V +D   E                   P+   I GI
Sbjct: 10  YAVIDLETTGLRPSWNDRVIEIGIVHLDLSGEVTGEWATL---VNPGRDLGPQ--HIHGI 64

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E +  + +     +  ++  +N+ FD  +  + F R   D+      
Sbjct: 65  TAADIRHAPA-FGEIAGAVAERL---DGRVVAAHNLPFDAGFLSHEFGRLGLDTPL---- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                          +      + W ++        L       G+     H+
Sbjct: 117 --------------DHTAGVCTMAWSAQFLPGAPRSLAACCARAGVSLNGHHE 155


>gi|301167913|emb|CBW27498.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ]
          Length = 438

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 27/201 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F ++D ET G +   D+  +   V++ + +E I+           +         +T I 
Sbjct: 13  FCVFDLETTGGNHKSDKIIEIGLVKI-KNFEVIDQKNYL---IQPEIKIPEFIQKLTSIK 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V+E +    I +F       I+  +N  FD  +  ++  R      +     
Sbjct: 69  EEDVKDSPVIE-DVIDEILKFM---GDSILVAHNTSFDVPFFNSVLKRLGKPQLKNKS-- 122

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                +          +  L  ++   GI+H  AH A  D  AT
Sbjct: 123 -----------------LCTNLMTKYLIPNLMNSNLNYMSKIFGIKHKKAHRALDDALAT 165

Query: 185 LALVWLIREKKPKLFEYLYDY 205
             L+ +  +          ++
Sbjct: 166 AELLLIYLKIYIDKGITKINH 186


>gi|300778928|ref|ZP_07088786.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
 gi|300504438|gb|EFK35578.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
          Length = 1555

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 122/412 (29%), Gaps = 46/412 (11%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D     IE+ + +  KP    +P 
Sbjct: 2   YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGNLIENQD-YIIKPEGYDIPF 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             A  I GIT + A  +G    E      +        ++  +N+ FD       FYR  
Sbjct: 61  -NAARIHGITTKIANEEGRDLQEILEEFSKVLEK--VRVVSGHNVEFDYNIVGAEFYRKN 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                             D M     F   G     R       +L +     G +   A
Sbjct: 118 LKDNLQEK-------PKADTMILGADFCQLGGGRGGRFKPPKLEELYE--KLYGSKFDEA 168

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           H+A ADV AT    + +        E L    ++    K +    + P   V     A  
Sbjct: 169 HNAAADVNATARAFFEMVRIGVVPAETLKISEDQLAYFKSLYPDPIKPFNIVIRRQVAD- 227

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
                     +H + K    G     D+  + + D+  +   L  +       +   IK+
Sbjct: 228 ----------FHNKKKQQDFGSIDEIDLGKYFNFDNHSVFSTLTATSS-----INDLIKK 272

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
                 P +  +D        ++    +    N    ++      + +         + +
Sbjct: 273 ASDENFPAVGMVDLGNMMGAFKFVSAVE--GANADRAKKHKEYLAKKQEAEENGTEFNEE 330

Query: 355 DVDSQLYDG----FFADVDRQIMDRILRTAPEQLSTLNLPFSD-RRLPELFF 401
           +  S+         F   DR    +  +  P++ + + L   D      L  
Sbjct: 331 EPVSEPLIPVVGCEFYISDRYEQKQFTKDDPDRRTQVVLLAKDFNGYKNLAK 382


>gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 326

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 31/222 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V+ D ET G D   +   +   +R +      E    F       +LP       T
Sbjct: 31  PKSYVVIDLETTGFDPKCNEILEIVALRYENN----EKIAEFSKLIKVSFLPS-FITEFT 85

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI          + ++  +    F    +  I+  +N  FD          NF       
Sbjct: 86  GINEDMIKNCNDI-SQTLKEFDDFLKSGD--ILVAHNAHFDI---------NFLYDNFMC 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + N    +D +D MR     + +              +L+DL     I + NAH  + D 
Sbjct: 134 YLNKPFSFDFVDTMRLSKLINQELAH----------HRLKDLCNQYNICYENAHRGEKDC 183

Query: 182 YATLALV----WLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
             T   +        +      + L +   K Q+R+      
Sbjct: 184 ELTHLCLMELKKTAFDNSLIENDVLVNNGLKTQIRQTQTKAK 225


>gi|25011356|ref|NP_735751.1| hypothetical protein gbs1312 [Streptococcus agalactiae NEM316]
 gi|24412894|emb|CAD46971.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 604

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 69/228 (30%), Gaps = 29/228 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N F+ +D ET G +   DR  +   V      + ++S E              +   + 
Sbjct: 50  KNRFIAFDIETPGLNSQQDRIVEVGAVLF-ENGKVVDSYESL---VNAKVNISADVTRLN 105

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            IT +        E +    +  F          +  +N +FD  +  N   R       
Sbjct: 106 NITNRMIKNAP-SENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLG----- 159

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             ++      D L + R                 G  ++K   +A    +++ N+H AK+
Sbjct: 160 --YNGEIKYLDTLSLSR-------------KNVKGLRNYKQNTVAEYFNLQNKNSHRAKS 204

Query: 180 DVYAT--LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
           D      +        +  K  +      NK    +L     +  ++ 
Sbjct: 205 DAIICGNILTKLFFIIENQKSRKSFSSKNNKISPEELEVCAVIQNIIF 252


>gi|159897533|ref|YP_001543780.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890572|gb|ABX03652.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 282

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 30/201 (14%)

Query: 5   FVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           FV++D E+ G DV    R  + A +R+ +  E I+  E            DP A  + GI
Sbjct: 26  FVLFDMESTGLDVQIGHRICEMAAMRI-QGREIIDRCEFL---VNPQREIDPAAFAVNGI 81

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +          E   ++++ F      ++  +N  FD  +  +   R           
Sbjct: 82  SAEMVANAP-SFGEIWPKVNKLFHE---AVLVAHNAYFDIGFLTSELSRIDLPPLET--- 134

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R              R   A  + L  LA   G E   +H A +DV A
Sbjct: 135 ---PVIDTLALAR--------------RYITARRYNLTSLATNLG-EKAPSHRAMSDVVA 176

Query: 184 TLALVWLIREKKPKLFEYLYD 204
              +   + +   +   +   
Sbjct: 177 LRPVFEHLLDILYRKGVHTLA 197


>gi|158421629|ref|YP_001522921.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
 gi|158328518|dbj|BAF86003.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 56/186 (30%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V       +I +   F      +     EA  + G++
Sbjct: 4   IVLDTETTGLEANKGDRVVEIGCV---EMVNRILTGNTFHVYINPERDMPAEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE +    +F +      +  +N  FD  +      R   +        
Sbjct: 61  SEFLSDKPK-FAEVADAFLEFIA---GDTLVIHNAAFDIGFLNAELARLSREPIAR---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D + + R  +  +              S KL DL    GI+      H A  D  
Sbjct: 113 -DRVVDTVALARRKHPGA--------------SAKLDDLMKRYGIDASRRVKHGALLDSE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
 gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 395

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 47/188 (25%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V V      +                      +TGIT
Sbjct: 27  IVFVDLETTGGSTAEHRITEVGVVEVGPAG--VSRWSSL---VDPQQPIPSFIQQLTGIT 81

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     EA  +  +   F   N  +   +N  FD  + R  F R            
Sbjct: 82  NAMVRGAPTFEA-IAPAL---FERLNGKLFVAHNASFDRGFLRGEFRRAGL--------- 128

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A                   L  L   + +   + H A AD    
Sbjct: 129 -AFDPDVLCTVRLSRALF----------PAEKRHGLDALVERHTLVPSDRHRALADADLI 177

Query: 185 LALVWLIR 192
                 + 
Sbjct: 178 WQFWQRLH 185


>gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 383

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 46/193 (23%), Gaps = 29/193 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    V  D ET G      R  +   V V      +                      +
Sbjct: 11  LAEPIVFVDLETTGGSTNEHRITEVGVVEVGPTG--VTRWSSL---VDPQQPIPSFIQQL 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT            +      + F+  N  +   +N  FD  + R  F R        
Sbjct: 66  TGITNAMVRGAPT--FDAIA--PELFARLNGKLFVAHNASFDRGFLRGEFRRVGISFDP- 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+L  +R   A                   L  L   + +   + H A AD
Sbjct: 121 ---------DVLCTVRLSRALF----------PSEKRHGLDALVERHSLVPSDRHRALAD 161

Query: 181 VYATLALVWLIRE 193
                     +  
Sbjct: 162 ADLIWQFWQRLHT 174


>gi|167582322|ref|ZP_02375196.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           TXDOH]
 gi|167620419|ref|ZP_02389050.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis Bt4]
          Length = 241

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 58/201 (28%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARAGDRIIEVGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+   ++  F       I   +N  FD  +    F      ++      
Sbjct: 61  TEFLRDKPK-FADIVDQLRDFVRDAELII---HNAPFDLGFLDAEFALLGLPAFSDHCAG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180


>gi|83720697|ref|YP_443303.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           E264]
 gi|257139540|ref|ZP_05587802.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           E264]
 gi|83654522|gb|ABC38585.1| DNA polymerase III, epsilon subunit [Burkholderia thailandensis
           E264]
          Length = 241

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 58/201 (28%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   IILDTETTGLNARAGDRIIEVGCVEL-LNRRLTGNNLHFYVNPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+   ++  F       I   +N  FD  +    F      ++      
Sbjct: 61  TEFLRDKPK-FADIVDQLRDFVRDAELII---HNAPFDLGFLDAEFALLGLPAFSDHCAG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180


>gi|325204438|gb|ADY99891.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240355]
          Length = 470

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +    +     +   N  
Sbjct: 183 YLEYSLSEHGVEEWIRQCFRLMNPK 207


>gi|325134568|gb|EGC57212.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M13399]
 gi|325144729|gb|EGC67024.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240013]
 gi|325205795|gb|ADZ01248.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M04-240196]
          Length = 470

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +    +     +   N  
Sbjct: 183 YLEYSLSEHGVEEWIRQCFRLMNPK 207


>gi|254672325|emb|CBA05474.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria
           meningitidis alpha275]
          Length = 312

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +    +     +   N  
Sbjct: 174 YLEYSLSEHGVEEWIRQCFRLMNPK 198


>gi|254670274|emb|CBA05558.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria
           meningitidis alpha153]
          Length = 461

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +    +     +   N  
Sbjct: 174 YLEYSLSEHGVEEWIRQCFRLMNPK 198


>gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
          Length = 444

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 59/186 (31%), Gaps = 28/186 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITG 62
           HFV  D ET   +       Q   VRV    +    +  + C+P       D   + I G
Sbjct: 100 HFVGVDVET--ANADWGSICQIGVVRVTDGMQV--DSHEWLCRPPAGIDHFDEGNIRIHG 155

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITP           +F+    +  +     ++  +N +FD        +        W  
Sbjct: 156 ITPDMVTDAP----DFAAVFPEVVAYVADQVLVAHNAQFDLTAFSRACHATGTPVPHWK- 210

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                             F+       +   G TS +L  +A   G+E  N HDA AD  
Sbjct: 211 ------------------FACSLAASRAAKLGITSHRLPVVAQHLGVELDNHHDAVADAR 252

Query: 183 ATLALV 188
           A   + 
Sbjct: 253 ACAGIF 258


>gi|295677150|ref|YP_003605674.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 244

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   LILDTETTGLNARGGDRILELGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE   +   F    +  I   +N  FD  +    F             +
Sbjct: 61  TEFLSDKPK-FAEIIDQFRDFIQGADLII---HNAPFDIGFLDAEFALLGLPPVS---TH 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 114 CGEIIDTLAQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180


>gi|217980141|ref|YP_002364191.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
 gi|217508312|gb|ACK55097.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 201

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 58/186 (31%), Gaps = 16/186 (8%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G         + A +  D     +  T V    P        EAV I GIT 
Sbjct: 23  LILDTETTGLG-DDAEVVEIAVI--DCAGNVLLDTLVRPSGPVP-----AEAVAIHGITD 74

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                     +E   R           ++ Y +  FD         R    +        
Sbjct: 75  AMLADAP-TWSEIHDRFCCLVE--GRQVVIY-SREFDARLISQTARRYGLPAP----KGF 126

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +   D   +  A++A++    +W          KL   A   G+   NAH A  D   TL
Sbjct: 127 DQVLDDDRIHCAMHAYAAFRGEWSEEKGRYRWQKLSAAAEQQGVTVGNAHRALGDCVMTL 186

Query: 186 ALVWLI 191
            ++  +
Sbjct: 187 GIIRAM 192


>gi|332286832|ref|YP_004418743.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
 gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
          Length = 236

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 56/200 (28%), Gaps = 27/200 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D A   R  + A V +             +         DPEA+ + G+T
Sbjct: 4   IVLDTETTGLDPAQGHRVVELACVEM-ENRSLTGRHLHLY--LNPGRDSDPEALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E E ++++  +       I   +N  FD  +      R     +      
Sbjct: 61  TEFLSGHPRFE-EVAQQLVDYVKDAEVII---HNAAFDVKFLNAELTRAGLPVF---NSL 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   R ++                    L  L    GI   H   H A  D  
Sbjct: 114 CGKITDSLLHARELHPG--------------KRNSLDALCERYGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYL 202
               +   +   +  L    
Sbjct: 160 LLADVWLAMTRGQDALLMDF 179


>gi|119962878|ref|YP_948455.1| DNA polymerase III subunit epsilon [Arthrobacter aurescens TC1]
 gi|119949737|gb|ABM08648.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens
           TC1]
          Length = 236

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 22/186 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G++    R    +   VD     I   E              EA  + G+T +K
Sbjct: 12  FDLETTGKNSRSARIVTASITVVDAHGGLIAEHEWLA---DPGVEIPLEASEVHGVTTEK 68

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G   AE +R +         +   +   N  +D         R             
Sbjct: 69  ARAEGRPAAEVTREVAGVLQGLFDDGTPVIAFNASYDFTVLAAESARYGVPQL------- 121

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            SR+ +LD         P  +             L  L    G++  NAH + AD  ATL
Sbjct: 122 -SRFPVLD---------PYVMNKQMDRYRKGKRTLTALCEEYGVDLTNAHTSAADALATL 171

Query: 186 ALVWLI 191
            ++  +
Sbjct: 172 RVLDAM 177


>gi|266622988|ref|ZP_06115923.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288865254|gb|EFC97552.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 595

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G     +R  +   V+V       +    F      D     E   +T 
Sbjct: 521 DTYVVFDIETTGFSPEKNRIIEIGAVKV-VNGVITDRFSTF---VNPDVPIPFEIEQLTS 576

Query: 63  ITPQKALRDGVV 74
           I     L    +
Sbjct: 577 INDNMVLSYPKI 588


>gi|255532547|ref|YP_003092919.1| DNA polymerase III subunit epsilon [Pedobacter heparinus DSM 2366]
 gi|255345531|gb|ACU04857.1| DNA polymerase III, epsilon subunit [Pedobacter heparinus DSM 2366]
          Length = 456

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 76/251 (30%), Gaps = 29/251 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G   + +   + + + V    E +E+ E                  +TGI+
Sbjct: 3   YAVVDIETTGGFASGNGITEIS-ILVHDGREVVEAYETL---INPGQEIPAYIETLTGIS 58

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +   +     +  I+         I   +N+ FD  + ++    + YD        
Sbjct: 59  NEMVVTAPL-FGGVAAEIYAMLHDK---IFVAHNVNFDFSFIKHHLSLSGYD-------- 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   L  +R                 G +S+ L  L  A  I   + H A  D  AT
Sbjct: 107 --LRCKKLCTVRLSRKLF----------PGYSSYSLGKLCNALNIAIHDRHRAGGDARAT 154

Query: 185 LALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
             L+ L+ +   + +        +K Q+      +     +         R    ++  V
Sbjct: 155 AELLTLLLKTDLEGIIVQTLSRASKEQVLPPHLSRTQIDKLPQVPGVYYFRDQKGIVVYV 214

Query: 244 AWHPRYKDSVI 254
                    V 
Sbjct: 215 GKAKNILKRVC 225


>gi|212640084|ref|YP_002316604.1| Exonuclease [Anoxybacillus flavithermus WK1]
 gi|212561564|gb|ACJ34619.1| Exonuclease [Anoxybacillus flavithermus WK1]
          Length = 222

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 67/210 (31%), Gaps = 27/210 (12%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F ++D ET G  VA  DR  +   V+V       + T   +  P  D    P  V +T I
Sbjct: 29  FTVFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPNRDL--PPVIVELTNI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +K         E  ++  QF     +     + I FD +  ++   R      + ++ 
Sbjct: 87  TEEKVKHAPTAI-EALQQFFQFVEQKQSVCFVGHYISFDLFVLKHELRREKMKFRKPTF- 144

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D LD++  I                     L+  A A G      H A  D   
Sbjct: 145 -----IDTLDLIGFIAPSYDMRD-------------LERYAQAFGTRMYERHSAIGDALT 186

Query: 184 TLALV----WLIREKKPKLFEYLYDYRNKN 209
           T  L        R +  + +  L    +  
Sbjct: 187 TAYLFVELLQQFRLRGYRTWGELLRATDSQ 216


>gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
 gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
          Length = 653

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 52/182 (28%), Gaps = 28/182 (15%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     DR    A +       +                P P  V I G+T ++
Sbjct: 22  VDVETSGLIARRDRILSIAVLTFGPDGTQTGEYSTL---VNPGCDPGP--VHIHGLTAER 76

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                  E + + RI          ++  +N +FD  +  + F R               
Sbjct: 77  LRDAPAFE-QVAGRIGALLQDR---VMVAHNAQFDYDFLAHEFARARLCLPVNQ------ 126

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
           R   L + R +             +  A    L  LA   G+    AHDA  D      +
Sbjct: 127 RLCTLALNRRV-------------EPPAADLSLASLAAHYGVPQTRAHDALDDTRVLAGI 173

Query: 188 VW 189
             
Sbjct: 174 FR 175


>gi|260772249|ref|ZP_05881165.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260611388|gb|EEX36591.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 246

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 56/206 (27%), Gaps = 37/206 (17%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLP 53
           N  V+ D ET G +          R  +   V      E I+       F      D   
Sbjct: 10  NRIVVLDTETTGMNFEGGPHYEGHRIIEIGAV------EIIDRKLTGRHFHVYLKPDREI 63

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            P+A+ + GIT    +       E  +    F        +  +N  FD  +    F + 
Sbjct: 64  QPQAIEVHGITDAFLVDKPQ-YKEVHQEFLDFIKGAE---LVAHNASFDVGFMDYEFAKV 119

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--H 171
                +          D L + + I+                    L  L    GI+  H
Sbjct: 120 NPAIGKTEQY--CKITDTLAMAKKIFPG--------------KRNNLDILCDRYGIDNSH 163

Query: 172 VNAHDAKADVYATLALVWLIREKKPK 197
              H A  D      +  L+   +  
Sbjct: 164 RTLHGALLDAEILADVYLLMTGGQTS 189


>gi|256831880|ref|YP_003160607.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
           DSM 20603]
 gi|256685411|gb|ACV08304.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
           DSM 20603]
          Length = 238

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 65/213 (30%), Gaps = 19/213 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D A DR    A V    +   +++                EA  I GIT + 
Sbjct: 11  FDTETTGVDTAHDRVVTAALVLRTGEVTTVDTWL-----IDPGVPIPDEAARIHGITTEY 65

Query: 68  ALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A+  G    +    I             +   N  FD         R+   +       G
Sbjct: 66  AVEHGANPVDALSVIADRIVDHMSQGWALVAFNATFDVCIVEAELARHGLPTLA--QRLG 123

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
                ++D +    A                  KL +L    G  +    H A ADV AT
Sbjct: 124 GPVAPVIDPLVLDRAV---------DRYRRGQRKLANLCSEYGVEDTGTLHTADADVVAT 174

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
           L ++  +  + P+L     D  +  Q +     
Sbjct: 175 LDVLERMVGRHPRLAAMTLDELHAFQAQAHTQW 207


>gi|309379715|emb|CBX21704.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 326

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 62/205 (30%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPKKPIPQFVAELTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
             +   V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVVDAPV-FAEIAGELFSVLK---GCVLIAHNSRFDYTFLKHEFHRAGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +    +     +   N  
Sbjct: 174 YLEYSLSEHGVEEWIRQCFRLMNPK 198


>gi|33865550|ref|NP_897109.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8102]
 gi|33632719|emb|CAE07531.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH
           8102]
          Length = 256

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 62/194 (31%), Gaps = 29/194 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +I D ET G D   DR  +   +  D     + + + F      +      A  I  I
Sbjct: 26  TLLIIDTETTGLDPEKDRCLEVGAILFDVSTRSVLAQQSFLLPVETN-----AAEPINRI 80

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P    R         R   +  +  +  ++  +N  FD  +                  
Sbjct: 81  -PASVTRLPQPWTGALRWFDELLTASD--VLVAHNAVFDRQWFGR--------------- 122

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L  +   +  S + ++WP+     +   ++DLALA G+   +AH A  D   
Sbjct: 123 ------DPLPAVSHPWLCSMEDLRWPAERQLRSRPSVRDLALAYGVPVWSAHRALTDCNY 176

Query: 184 TLALVWLIREKKPK 197
              +     + +  
Sbjct: 177 LAEVFARCDDLETM 190


>gi|319938082|ref|ZP_08012482.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1]
 gi|319806988|gb|EFW03627.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1]
          Length = 221

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 23/200 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++++YD ET G     D   +   + V+     ++S                  V ITGI
Sbjct: 39  NYIMYDLETTGL-TNKDHIIEIGAIYVEDN-TIVDSFSALC---NPGIFITQRIVEITGI 93

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           T +        E +  ++  ++ +   T + +G N   FD+   +    R   +      
Sbjct: 94  TNKMLSDKP-PEYDVVKQFVEWCNSKETSLAVGQNINSFDNRMLKVATKRFKLNFPF--- 149

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L +   +                  S +  DL    GIE+  AH A  DV 
Sbjct: 150 ---ERSLDTLKMAINMKL---------KEKGLVASNQQSDLGKLYGIEY-VAHRAINDVE 196

Query: 183 ATLALVWLIREKKPKLFEYL 202
           A   +   +++        L
Sbjct: 197 ALYQIFEHLKKDYNGDLPIL 216


>gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 382

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 49/189 (25%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   +  R  +   V V      +                      +TGIT
Sbjct: 15  IVFVDLETTGGSTSEHRITEVGVVEVGPAG--VSRWSSL---VDPQQPIPSFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E+  +  +   F   N  +   +N  FD  + R+ F R            
Sbjct: 70  NDMVRGAPTFES-IAPAL---FERLNGKLFVAHNASFDRGFLRSEFRRAGI--------- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A             G     L  L   + +   + H A AD    
Sbjct: 117 -AFDPDVLCTVRLSRALF----------PGEKRHGLDALVERHALVPSDRHRALADADLI 165

Query: 185 LALVWLIRE 193
                 +  
Sbjct: 166 WQFWQRLPT 174


>gi|284040773|ref|YP_003390703.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
 gi|283820066|gb|ADB41904.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
          Length = 270

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 78/284 (27%), Gaps = 26/284 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
                +D ET G ++A DR      ++     E I        +         E+  I G
Sbjct: 9   KPLAFFDLETTGINIAKDRIIDICIIKALPGGEVI----TKNQRVHPGMPIPLESSLIHG 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I               +R + QF       + G+N  RFD       F R   D      
Sbjct: 65  IYDDDVQDAP-PFKTVARTLAQFLD--GCDLAGFNCNRFDVPLLVEEFLRANVD------ 115

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKADV 181
                 +D+ +            ++  +       +  +DL  A+G E    A     D 
Sbjct: 116 ------FDMKNRRLVDAQRIFHLMEPRNLSAAYKFYCNKDLVGAHGAEADTIATLEVLDA 169

Query: 182 Y---ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
                   +              +    +    + +     M        +F   +   A
Sbjct: 170 QVQRYMGMVAKSDSGADVVFENDVDMLHSLTANKNIDLAGRMVINEKGEEVFNFGKHKGA 229

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD 282
            +  V    + + S     L GD  +       ++  R+F++  
Sbjct: 230 PVLEVL---KKEPSFYDWILKGDFPLDTKRRLTEIRLRMFSNGK 270


>gi|332878163|ref|ZP_08445892.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683901|gb|EGJ56769.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1486

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 72/202 (35%), Gaps = 26/202 (12%)

Query: 5   FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     + P           Q A    D+    I   + F   P    +P 
Sbjct: 2   YLIFDTETTGLPRNYNAPISDSNNWPRAVQIAWQLHDQWGALI-EHQDFLIAPDGFDIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  + GI+   A + GV  AE     ++  S      +   NI FD       FYR  
Sbjct: 61  -DAEKVHGISTLLAEKQGVPIAEVFAAFNEALSKAQ--YVVGQNIGFDINIMGAEFYRYG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDL-ALANGIEHV 172
            +          S  D L V+      + +  +      G   F  L +L +   G+   
Sbjct: 118 VE----------SPLDKLPVIDTCTEATANLCKIEGGRGGKYKFPSLTELHSFLFGVPFA 167

Query: 173 NAHDAKADVYATLALVWLIREK 194
            AH+A ADV AT    + +  +
Sbjct: 168 EAHNATADVEATARCFFELIRR 189


>gi|325269040|ref|ZP_08135661.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           multiformis DSM 16608]
 gi|324988661|gb|EGC20623.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
           multiformis DSM 16608]
          Length = 284

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 79/268 (29%), Gaps = 23/268 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   VI+D E  G D+  DR  Q + ++     ++ E   +F            E   +
Sbjct: 5   LTKPLVIFDLEATGLDLVNDRIIQISFIKAYPDGKE-ERENIF---INPGKPIPSEVTQL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ +          + ++ +   FS       G+N+ RFD       F R   D    
Sbjct: 61  TGISDEDVAEAP-TFKQKAKELADKFS--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDFT 117

Query: 121 SW-----DNGNSRWDLLDVMRAIYAFSPDGI------QWPSRDDGATSFKLQDLALAN-- 167
                   N   + +  ++  A   +    +          +D  AT   LQ        
Sbjct: 118 KSRLIDAQNIYHKMERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATWRVLQGELDMYAP 177

Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
           G +         D+        +             +  +K+    L+      P  H  
Sbjct: 178 GRQEEPERVLNNDMDELAEFSRMNDFVDFAGRMVWKETTDKDG--NLLLDATGKPRRHEV 235

Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIG 255
             FG  R        +   P Y   ++ 
Sbjct: 236 FNFGKYRGWNVADV-LHRDPGYYSWMLA 262


>gi|227536554|ref|ZP_03966603.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243631|gb|EEI93646.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 316

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 28/224 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +      +D ET G ++ LDR  + + ++V     K    EV   +         E+   
Sbjct: 5   LKRPLAFFDLETTGVNIPLDRIVEISILKVMPDGNK----EVLTRRINPGMPIPAESSMF 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E  + I  F    +  + GYN+ +FD       F R   D    
Sbjct: 61  HGIYDEDVKDLP-SFKELGQEIADFIGDAD--LAGYNSNKFDVPMLMEEFLRANVDF--- 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
               G +  D+ ++   +   +                           +  NAH A+AD
Sbjct: 115 -SLEGRNFVDVQNIFHQMEQRTLK----------------AAYKFYCDQDLNNAHTAEAD 157

Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
           V AT  ++   +   +  ++E  +  ++K  +  +  +   T L
Sbjct: 158 VTATYEVLKAQLSRYEDVVYEDKHGNKSKPVVNDVEALHEFTNL 201


>gi|331007390|ref|ZP_08330576.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989]
 gi|330418798|gb|EGG93278.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989]
          Length = 239

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 25/194 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +   R  +   V +    +        + +P  +   + +A+ + GIT
Sbjct: 4   IVLDTETTGLEPSKGHRIIEIGCVEL-ENRKLTGRHYHQYIQP--EREIEAQAMEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +           F + + +F +  +   +  +N  FD  +  N   +     Y+    +
Sbjct: 61  NEYLKGKPT----FVQIMDEFMAFVDGAELIIHNAPFDVGFINNELAKYGDKKYQNI-TH 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +    +               L  L    G+++     H A  D  
Sbjct: 116 YCGVIDTLVMARQKHPGQKN--------------NLDALCKRYGVDNSQRDLHGALLDSE 161

Query: 183 ATLALVWLIREKKP 196
               +  L+   + 
Sbjct: 162 ILADVYLLMTGGQR 175


>gi|313205456|ref|YP_004044113.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312444772|gb|ADQ81128.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 189

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 67/199 (33%), Gaps = 25/199 (12%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++ +D ET G                R  Q A +  D    KI     F  KP    +P 
Sbjct: 2   YLFFDTETTGLPRDWKAPVSDLNNWPRLVQLAYLFFDSNGNKIAG-GDFIIKPEGFTIPT 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            EA  I GIT ++A ++G       R      +      +  +N+ FD+      F RN 
Sbjct: 61  -EASRIHGITTERANQEGKPIQTVLRDFQSMINEAQ--YLVAHNMSFDEKIVGAEFLRNN 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                           +           P G +WP   +    +KL         +   A
Sbjct: 118 MPDSIAP---KRKICTMQSTTNFCAINGPYGYKWPKLSELH--YKL------FKTDFEEA 166

Query: 175 HDAKADVYATLALVWLIRE 193
           H+A AD++AT    W +R 
Sbjct: 167 HNAAADIHATARCFWELRR 185


>gi|194449117|ref|YP_002047241.1| exonuclease [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194407421|gb|ACF67640.1| exonuclease [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
          Length = 198

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 20/192 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +  D ET G         +   +  D     + +T V   KP  D     EA+ I G
Sbjct: 22  DNRLFIDTETTGLG-DDAEIVEICII--DSHGFILLNTLVKPTKPIPD-----EAIAIHG 73

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          +    + +         + YN   +D    R  +  N   S    W
Sbjct: 74  ITNEMVAYAPA-WTDICGAVEELIRRFG--FVIYNA-DYDLRLIRQTYALNGRPSEGAPW 129

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADV 181
                    +           +    P +  G    KL D A   G +    AH A AD 
Sbjct: 130 MLAAHSVCAM-------KLYAEYRGEPGKYHGYKWHKLVDAAAHEGVVIEGKAHRALADC 182

Query: 182 YATLALVWLIRE 193
             TL ++  + +
Sbjct: 183 KMTLGVIKALAQ 194


>gi|124002816|ref|ZP_01687668.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
 gi|123992044|gb|EAY31431.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
          Length = 1403

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 22/194 (11%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D   + + S E    KP    +P 
Sbjct: 2   YLIFDTETTGLPKDFNAPHTDVDNWPRLVQIAWQLHDYNGKLV-SAENMIVKPEGFTIPF 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             A  + GI+ + AL +G+   E   +     +     +I  +NI FD       + R  
Sbjct: 61  -NAEKVHGISTEIALEEGLPLNEVLEKFAVDIARSE--LIIGHNIGFDVNIMGAEYVRTT 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            DS        +++ +       I        +WP+  +  T                +A
Sbjct: 118 VDSKLHEVPTYDTKSEETAEYVGIQGGRGGKFKWPTLTELHTKL--------FSESFDDA 169

Query: 175 HDAKADVYATLALV 188
           HDA  DV AT    
Sbjct: 170 HDAAYDVLATARCY 183


>gi|160895546|ref|YP_001561128.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160361130|gb|ABX32743.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
          Length = 211

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 49/178 (27%), Gaps = 30/178 (16%)

Query: 1   MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G   A   R  + A V +    + ++  +             P    
Sbjct: 1   MPQPIAVIDFETTGMAPAQGARATEVAIVLI-EGGQVVDRFQSLM---RTGAWIPPFITR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT          E E  R   +F     +  +  +N  FD  + ++           
Sbjct: 57  LTGITNAMVAAAPPAE-EVMRDAARFV---GSAPMVAHNAAFDSKFWQSELALAGE---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
                            A   F+   +        A S  L  L    G+     AH 
Sbjct: 109 ----------------AAPQPFACTVLLSRRIYPEAPSHSLSRLTAHLGLPVAERAHR 150


>gi|325208398|gb|ADZ03850.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 469

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 31  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 85

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 86  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 131

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 132 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 181

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 182 YLEYSLSEHGVEAWIRQCFRLMNPK 206


>gi|325140605|gb|EGC63125.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis CU385]
          Length = 469

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 31  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 85

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 86  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 131

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 132 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 181

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 182 YLEYSLSEHGVEAWIRQCFRLMNPK 206


>gi|325136504|gb|EGC59108.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M0579]
          Length = 469

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 31  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 85

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 86  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 131

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 132 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 181

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 182 YLEYSLSEHGVEAWIRQCFRLMNPK 206


>gi|325130506|gb|EGC53261.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis OX99.30304]
          Length = 470

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207


>gi|319410698|emb|CBY91078.1| putative DnaQ-like exonuclease [Neisseria meningitidis WUE 2594]
          Length = 461

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 174 YLEYSLSEHGVEAWIRQCFRLMNPK 198


>gi|308389143|gb|ADO31463.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha710]
          Length = 461

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 174 YLEYSLSEHGVEAWIRQCFRLMNPK 198


>gi|261392288|emb|CAX49811.1| putative DnaQ-like exonuclease [Neisseria meningitidis 8013]
          Length = 470

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207


>gi|254560605|ref|YP_003067700.1| DNA polymerase III subunit epsilon [Methylobacterium extorquens
           DM4]
 gi|254267883|emb|CAX23749.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           DM4]
          Length = 236

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 26/186 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V        +++ E F             A  + GI+
Sbjct: 5   IVLDTETTGTEARNGDRLIEIGCV---ELINHVQTGETFHRLINPQRAVSEGAFAVHGIS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V    F+  +  F        +  +N  FD  +    F R            
Sbjct: 62  DAMLADKPV----FAEVVDAFLEFCGDARLVIHNAPFDVGFLNMEFARLG--PAAPKAIA 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  + +               L  L    G++      H A  D  
Sbjct: 116 LEDVVDTLLLARRKHPGAAN--------------NLDALCNRYGVDTTRRVKHGALLDAQ 161

Query: 183 ATLALV 188
               + 
Sbjct: 162 ILAEVY 167


>gi|240138045|ref|YP_002962517.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240008014|gb|ACS39240.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 236

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 26/186 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V        +++ E F             A  + GI+
Sbjct: 5   IVLDTETTGTEARNGDRLIEIGCV---ELINHVQTGETFHRLINPQRAVSEGAFAVHGIS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V    F+  +  F        +  +N  FD  +    F R            
Sbjct: 62  DAMLADKPV----FAEVVDAFLEFCGDARLVIHNAPFDVGFLNMEFARLG--PAAPKAIA 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  + +               L  L    G++      H A  D  
Sbjct: 116 LEDVVDTLLLARRKHPGAAN--------------NLDALCNRYGVDTTRRVKHGALLDAQ 161

Query: 183 ATLALV 188
               + 
Sbjct: 162 ILAEVY 167


>gi|163850914|ref|YP_001638957.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens
           PA1]
 gi|163662519|gb|ABY29886.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens
           PA1]
          Length = 241

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 26/186 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V        +++ E F             A  + GI+
Sbjct: 10  IVLDTETTGTEARNGDRLIEIGCV---ELINHVQTGETFHRLINPQRAVSEGAFAVHGIS 66

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V    F+  +  F        +  +N  FD  +    F R            
Sbjct: 67  DAMLADKPV----FAEVVDAFLEFCGDARLVIHNAPFDVGFLNMEFARLG--PAAPKAIA 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  + +               L  L    G++      H A  D  
Sbjct: 121 LEDVVDTLLLARRKHPGAAN--------------NLDALCNRYGVDTTRRVKHGALLDAQ 166

Query: 183 ATLALV 188
               + 
Sbjct: 167 ILAEVY 172


>gi|15677307|ref|NP_274462.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|7226692|gb|AAF41810.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|316984587|gb|EFV63552.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Neisseria meningitidis H44/76]
 gi|325199934|gb|ADY95389.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis H44/76]
          Length = 470

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207


>gi|218768453|ref|YP_002342965.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491]
 gi|121052461|emb|CAM08798.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491]
          Length = 470

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207


>gi|87119404|ref|ZP_01075302.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Marinomonas sp. MED121]
 gi|86165795|gb|EAQ67062.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Marinomonas sp. MED121]
          Length = 235

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 58/200 (29%), Gaps = 28/200 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    +I D ET G D     R  +   V      ++  +   F      D   + EA  
Sbjct: 1   MMRQ-IILDTETTGIDPKQGHRIIEIGCV---EMLDRKLTKNHFHVYINPDRQVEEEAFQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI+ +             +    F +      +  +N  FD  +  + F +       
Sbjct: 57  VHGISDEFLADKPRFH----QVAQDFLNYIQGAELVIHNAPFDVGFIDHEFAKLGNFP-- 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177
               +  S +D L   R+ +    +               L  L    GI+  H   H A
Sbjct: 111 -KVADICSVFDTLAFARSKHPGQKN--------------NLDALCKRYGIDNSHRELHGA 155

Query: 178 KADVYATLALVWLIREKKPK 197
             D      +  L+   +  
Sbjct: 156 LLDSEILADVYLLMTGGQTS 175


>gi|21673865|ref|NP_661930.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS]
 gi|21647000|gb|AAM72272.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS]
          Length = 232

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 21/189 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FVI+D ET G D+  DR      V    +   I+  + F      + +   +AV + GI 
Sbjct: 45  FVIFDTETSGFDLVKDRILSIGAV--SMKGSTIDIADSFEVLLRQEAIGGKDAVSVHGIL 102

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +     G+ E E   R   +    N  I+ ++        +R +  R            
Sbjct: 103 KRDLT-QGMEEGEAVCRFLDYL--GNGVIVAHHADFDIAMVNRVLSQRYG---------- 149

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADVY 182
                 LL+      +F+    + P  +    S  ++L +L    GI   + H +  D Y
Sbjct: 150 ----IKLLNEALDTASFAKRLEKGPYYNLAHKSGEYRLDNLCARYGICLYDRHTSAGDAY 205

Query: 183 ATLALVWLI 191
            T  L   +
Sbjct: 206 LTAQLFQRL 214


>gi|313679706|ref|YP_004057445.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977]
 gi|313152421|gb|ADR36272.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977]
          Length = 252

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 27/189 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V+ D ET G   + +   + A +RV+         E F           P    +TGI+
Sbjct: 78  LVVLDLETTGLSPSENEIIEIALMRVEP-----GRVERFARLVNPGSPIPPFITRLTGIS 132

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +    + +        ++   N  FD  + R    R     +      
Sbjct: 133 SADVADAP----DVYTALEEALPYLEGAVLVIQNAPFDLGFLRPRACRLGVKIHN----- 183

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                +++D ++      P   +                A    IE    H A  DV AT
Sbjct: 184 -----EVIDTVQWARRALPRMRRRGLDHLIR--------AFEVSIETGARHRALGDVEAT 230

Query: 185 LALVWLIRE 193
             +   +  
Sbjct: 231 WTVAREMYY 239


>gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
           Marseille]
 gi|151280128|gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
           Marseille]
          Length = 235

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 29/196 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G +    DR  +   V  V+R+     +   F      +   +  A+ + G+
Sbjct: 4   IVLDTETTGLNPRSGDRIIEIGCVELVNRRL----TGNNFHHYINPERDSEEGALAVHGL 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE +     + S  +  I   +N  FD  +      R    S++    
Sbjct: 60  TTEFLSDKPK-FAEIAAEFRDYISGADVII---HNAPFDIGFLDAELKRVNTPSFKEHV- 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
                 D L   + ++                    L  L    GI   H   H A  D 
Sbjct: 115 --GEVIDTLVQAKEMHPG--------------KRNSLDALCDRYGISNAHRALHGALLDA 158

Query: 182 YATLALVWLIREKKPK 197
                +   +   +  
Sbjct: 159 ELLAEVYLAMTRGQNS 174


>gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
 gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
          Length = 896

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 83/238 (34%), Gaps = 38/238 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAV 58
            V++D ET G +V  D   + A +R+ +  E +      + +     LP      +P   
Sbjct: 514 IVVFDTETTGLNVFQDDIIEIAAIRI-KGGEVVGEPLDLYIETDKPILPMLGDKENPMYA 572

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
                  + +  + +  ++  +R   F +   T  I  +N  +D     N   R   D  
Sbjct: 573 IYH---EKMSTGELLSPSDALQR---FLAYVGTSPILGHNANYDYNILDNNLQRYCKD-- 624

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                +    +D L ++R +                  S+KL+ L     +  VN+H A 
Sbjct: 625 -TMQAHDIRCFDSLKLIRLLAPSLH-------------SYKLESLLETFHLAGVNSHQAI 670

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
            DV AT++LV L  EK  +          + Q    I    + P  +V       R  
Sbjct: 671 DDVKATVSLVRLCAEKARE---------KQAQQEAFIHHPKVKPFANVLRSNYGERYR 719


>gi|13473785|ref|NP_105353.1| DNA polymerase III subunit epsilon [Mesorhizobium loti MAFF303099]
 gi|14024536|dbj|BAB51139.1| DNA polymerase III epsilon chain [Mesorhizobium loti MAFF303099]
          Length = 240

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 59/185 (31%), Gaps = 27/185 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D   DR  +  GV +  ++     T   +  P        EA  + GI+ 
Sbjct: 4   IIFDTETTGLDSRDDRVIELGGVELVNRF-PTGRTFHHYINPQ-GRAIHEEAQAVHGISA 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                     AE +    ++ +  +   +  +N  FD  +    F R  +        + 
Sbjct: 62  ADLAGKP-TFAEIAE---EWLTFTDGAKLVAHNATFDIGFLNVEFGRLGHPVV-----DP 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183
               D L + R  +   P+               L  L    GI++     H A  D   
Sbjct: 113 GRVVDTLALARRKHPMGPN--------------SLDALCRRYGIDNTKRTKHGALLDSEL 158

Query: 184 TLALV 188
              + 
Sbjct: 159 LAEVY 163


>gi|313500723|gb|ADR62089.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1]
          Length = 203

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 51/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +      +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPGTGCRATEVAVVML-EGGRIVERYQSLM---NAGVPVPAFVAGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT         VE +    + +F        +  +N  FD  +      R        
Sbjct: 57  TGITTAMLRSAPPVE-KVMNEVAEFV---GGTPLLAHNAAFDQKFWDYELSRIGRS---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                               F+   +        A + KL  L    G  +   AH A A
Sbjct: 109 ----------------RSQPFACSLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L+  +     +  
Sbjct: 153 DAEMAANLLQHLAGVLRQDH 172


>gi|117920694|ref|YP_869886.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3]
 gi|117613026|gb|ABK48480.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3]
          Length = 229

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 58/223 (26%), Gaps = 33/223 (14%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N  V+ D+ET G       R  +   V +  Q +               +  +      T
Sbjct: 28  NTVVVLDFETSGLSPNQGARAIEIGAVLI-EQGQITARFSELM---NPGFRINSFIEDYT 83

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ Q         AE   R  +F        +  +N  FD  +    F +  +      
Sbjct: 84  GISNQMLAHA-APCAEVMARFAEFIGKH---HLVAHNATFDQRFLDAEFSQIGH------ 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180
                         +    F    +        A + +L  L     +      H A AD
Sbjct: 134 --------------QYPGQFGCSLLLARRLYPEAINHQLATLVRHKQLPTNGTYHRALAD 179

Query: 181 VYATLALVWLIREKKPKLFEYL---YDYRNKNQLRKLIDIQNM 220
              T  L   +     + +      +    K   +   ++   
Sbjct: 180 AEMTGHLWLRMLADLKQGYAITEPPFSLMQKIMAKTKAEVPKF 222


>gi|77458414|ref|YP_347919.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf0-1]
 gi|77382417|gb|ABA73930.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens Pf0-1]
          Length = 252

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 57/203 (28%), Gaps = 31/203 (15%)

Query: 1   MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPE 56
           M    V+ D ET G  V    R  +   V      E I        F      D   D  
Sbjct: 1   MATRSVVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEG 54

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +  +      AE +    +F +     I   +N  FD  +  N F      
Sbjct: 55  AIAVHGITNEFLVGKPR-FAEVADEFFEFINGAQLII---HNAAFDVGFINNEFALMGQH 110

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                     +  D L + R  +    +               L  L    G+++     
Sbjct: 111 DRADI-TQHCTILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGREL 155

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +   +   +  
Sbjct: 156 HGALLDSEILADVYLTMTGGQTS 178


>gi|114777499|ref|ZP_01452496.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114552281|gb|EAU54783.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 300

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 49/190 (25%), Gaps = 26/190 (13%)

Query: 5   FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            ++ D ET G      DR  +   + V  +        VF      +     E V I GI
Sbjct: 55  LIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPERNIPDEVVRIHGI 114

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
              K         E ++    F        +  +N  FD  +  N    N +        
Sbjct: 115 DNAKVKDQP-TFREIAQEFLDFIE---GATLVIHNAPFDLGFIMNELRINNFPEIGHMQ- 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
                 D L   R  +    +               L  L     IE  H   H A  D 
Sbjct: 170 ----VIDTLVFAREKHPHQRN--------------NLDALCDRYNIERGHRELHGALLDS 211

Query: 182 YATLALVWLI 191
                +   +
Sbjct: 212 ELLAEVYLGM 221


>gi|148261748|ref|YP_001235875.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
 gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
          Length = 225

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V++D ET G +    DR  + A + +       +           +     EA  + G+T
Sbjct: 5   VLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTL---IDPERDIPAEASRVHGMT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE +  + +FF+      +  +N  FD  +    F R            
Sbjct: 62  SADVAGKPK-FAEIAAELLEFFAE---DPLVAHNAPFDFGFLDAEFARIGR--------- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                  LD  R I   +    ++P          L  L     I+      H+A  D  
Sbjct: 109 -----AALDRARMIDTLALAKQRFPGMP-----NSLDALCRRFDIDFSARTTHNALLDCK 158

Query: 183 ATLALV 188
               + 
Sbjct: 159 LLAEVY 164


>gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
 gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
          Length = 388

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 48/188 (25%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +   V V  Q         +                +TGI+
Sbjct: 15  LAFVDLETTGGSAADHRITEIGVVEVGPQG-----VSTWTSLIDPQQPIPAFIQQLTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +           FS    + F+     +   +N  FD  + R  F R  +         
Sbjct: 70  DEMVRGAPT----FSSIAAELFARLEGRLFIAHNASFDRGFLRAEFERAGFAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DMLCTVRLSRALF----------PRESRHGLDALIERHALVPNARHRALADADLV 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQRLP 173


>gi|269213464|ref|ZP_05982022.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           cinerea ATCC 14685]
 gi|269146173|gb|EEZ72591.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           cinerea ATCC 14685]
          Length = 470

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVSGLTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGELFSVLK---GCVLIAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207


>gi|167856497|ref|ZP_02479211.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755]
 gi|167852377|gb|EDS23677.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755]
          Length = 256

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 56/197 (28%), Gaps = 30/197 (15%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G +            +   V V            F          + EA+ +
Sbjct: 10  VVLDTETTGMNFNGAPHIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEAEAMQV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         AE +    +F       I   +N  FD  +  + F  +F  +   
Sbjct: 67  HGITNEMLADKPA-FAEIADEFIEFIKGAELII---HNAPFDVGFIDHEF--SFLPNPPE 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R +Y                    L  L    GI++     H A 
Sbjct: 121 KVAQMCTVTDSLQLARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166

Query: 179 ADVYATLALVWLIREKK 195
            D      +  ++   +
Sbjct: 167 LDAEILADVFLMMTGGQ 183


>gi|170726548|ref|YP_001760574.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908]
 gi|169811895|gb|ACA86479.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908]
          Length = 205

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 56/197 (28%), Gaps = 30/197 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D+ET G      DR  +   V++      +++ +         +         TGIT
Sbjct: 10  IVLDFETTGLSPNQGDRAIEIGAVKL-EDGVVVDTFQALM---NPGFRITSFIESYTGIT 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q        E     R   F    N   +  +N  FD  +               S  N
Sbjct: 66  NQMLSTAAPCEV-VMDRFADFIHGSN---LVAHNASFDQRFLDAEL----------SLIN 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183
            +   +    M        +          A + KL  L     IE+    H A AD   
Sbjct: 112 RHYTGEFACSMLIARRIYQE----------APNHKLGGLVAFRQIENDGVFHRALADSEM 161

Query: 184 TLALVWLIREKKPKLFE 200
           T  L   + E     + 
Sbjct: 162 TAKLWLTMIEDIQTRYS 178


>gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 383

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 47/188 (25%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V V      +                      +TGIT
Sbjct: 15  IVFVDLETTGGSTAEHRITEVGVVEVGPAG--VSRWSSL---VDPQQPIPSFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     EA  +  +   F   N  +   +N  FD  + R  F R            
Sbjct: 70  NAMVRGAPTFEA-IAPAL---FERLNGKLFVAHNASFDRGFLRGEFRRVGL--------- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A                   L  L   + +   + H A AD    
Sbjct: 117 -AFDPDVLCTVRLSRALF----------PAEKRHGLDALVERHTLVPSDRHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQRLH 173


>gi|297566609|ref|YP_003685581.1| DNA polymerase III subunit epsilon [Meiothermus silvanus DSM 9946]
 gi|296851058|gb|ADH64073.1| DNA polymerase III, epsilon subunit [Meiothermus silvanus DSM 9946]
          Length = 252

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 61/199 (30%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G     +   + A +R++      E  +VF           P    +TGIT 
Sbjct: 80  VVLDLETTGLSALENEIIEIAFIRLEG-----EKRQVFQRFVNPGSPIPPFISRLTGITH 134

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          +    + +   +    ++   N  FD  + R  F R         +   
Sbjct: 135 RDLEGAP----DVYTVLEEALPLLEDSVLIIQNAPFDLGFLRPRFLRLG-------YKMD 183

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADVYAT 184
           N   D +   R                 G +   L  LA A  ++ + + H A  DV AT
Sbjct: 184 NEVIDTVAWARRA-------------LPGLSKRGLDHLAWAFDLDTIVSRHRALGDVEAT 230

Query: 185 LALVWLIREKKPKLFEYLY 203
           L +   +            
Sbjct: 231 LLVAKEMYYMLTAGKPLAL 249


>gi|319760755|ref|YP_004124692.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
 gi|317115316|gb|ADU97804.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
          Length = 209

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 50/178 (28%), Gaps = 30/178 (16%)

Query: 1   MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M +   + D+ET G   A   R  + A V ++ +   ++                P    
Sbjct: 1   MPSPIAVIDFETTGMTPAQGARATEVAIVLMEGE-RVVDRFASLM---KTGVWIPPFITR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT          E    R   +F        +  +N  FD  + ++       D   
Sbjct: 57  LTGITNAMVDAAPAAEP-VMREAARFV---GDAPMVAHNAAFDSRFWQSELRHAGLD--- 109

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176
                            A + F+   +        A S  L  L    G+     AH 
Sbjct: 110 -----------------APHPFACTVLLSRRIYPDAPSHSLGRLTDHLGLPRTGRAHR 150


>gi|167562346|ref|ZP_02355262.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
           EO147]
 gi|167574356|ref|ZP_02367230.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
           C6786]
          Length = 240

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 53/201 (26%), Gaps = 27/201 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V       +  +              DP A+ + G+T
Sbjct: 4   IILDTETTGLNARAGDRVIEIGCV---ELLNRRLTGNNLHFYVNPGRDSDPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    +  F       I   +N  FD  +    F      ++      
Sbjct: 61  TEFLSDKPK-FAEIVDELRDFVRDAELII---HNAPFDLGFLDAEFSLLGLPTFTDHCAG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 117 ---VIDTLVQAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLY 203
               +   +   +  L   + 
Sbjct: 160 LLAEVYLAMTRGQESLVIDML 180


>gi|291613978|ref|YP_003524135.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus
           ES-1]
 gi|291584090|gb|ADE11748.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 233

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 30/195 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  + A +  +    K+     F      +   D  A  + G+T
Sbjct: 4   IVLDTETTGLDPKQGHRIIEVAAI--ELNGRKVSE-RTFHRYINPEREIDEGAAAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +   +    AE +  + +F +     I   +N  FD  +                   
Sbjct: 61  LDRLQDEPK-FAEVAPALLEFIAGAELII---HNAPFDIGFLNAELALAGLPLL------ 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
            N   D L V + ++                    L  L     ++  H   H A  D  
Sbjct: 111 NNPVIDTLKVAKELHPG--------------KKNNLNALCDRYQVDNSHRTLHGALLDTE 156

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 157 LLAEVYLGMTRGQES 171


>gi|219849043|ref|YP_002463476.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
           9485]
 gi|219543302|gb|ACL25040.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
           9485]
          Length = 934

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 59/189 (31%), Gaps = 34/189 (17%)

Query: 2   TNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
            N+  +V  D ET G    LD   + A V   R  + ++  E    +P        +   
Sbjct: 1   MNNRIYVAIDVETTGLQSGLDEIIEVAAV-TFRGRDILDRFE-RLVRPRQSVPL--KITR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI P    +      E    + +F        I  ++I FD    R          Y 
Sbjct: 57  LTGIDPAALAQAPR-FNEIGADLARFI---GNRPIVGHSIGFDLMMLRAQGMNFNQPIY- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D  ++                    ATS+KL  LA   GI H +AH A  
Sbjct: 112 ----------DTFELA-------------TLLLPQATSYKLSALAARLGIPHPDAHRALN 148

Query: 180 DVYATLALV 188
           D      L 
Sbjct: 149 DAEVAAQLF 157


>gi|114328806|ref|YP_745963.1| DNA polymerase III subunit epsilon [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316980|gb|ABI63040.1| DNA polymerase III, epsilon chain [Granulibacter bethesdensis
           CGDNIH1]
          Length = 225

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 52/191 (27%), Gaps = 30/191 (15%)

Query: 1   MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   V++D ET G D    DR  + A + +        +                EA  
Sbjct: 1   MSRS-VLFDTETTGFDPLTGDRILEIAALELFNDLPTGNTFHTL---VDPCRDVPEEATR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + G T +      +    F+  +    +      +  +N  FD  +    F R       
Sbjct: 57  VHGFTAEMLRGKPL----FADIVEDLLAFFGRDPLIAHNAPFDFNFLNAEFARLGKP--- 109

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                       LD  R I        ++P          L  L     I+      H+A
Sbjct: 110 -----------KLDPARMIDTLVMAKARFPGMP-----NSLDALCRRFSIDLSQRTTHNA 153

Query: 178 KADVYATLALV 188
             D      + 
Sbjct: 154 LLDCKLLAEVY 164


>gi|161870321|ref|YP_001599491.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442]
 gi|161595874|gb|ABX73534.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442]
          Length = 461

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRVGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +    +     +   N  
Sbjct: 174 YLEYSLSEHGVEEWIRQCFRLMNPK 198


>gi|26991449|ref|NP_746874.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
 gi|24986524|gb|AAN70338.1|AE016675_8 exonuclease [Pseudomonas putida KT2440]
          Length = 203

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 51/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +      +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPGTGCRATEVAVVML-EGGRIVERYQSLM---NAGVPVPAFVAGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT         VE +    + +F        +  +N  FD  +      R        
Sbjct: 57  TGITTAMLRSAPPVE-KVMNEVAEFV---GGTPLLAHNAAFDQKFWDYELGRIGRS---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                               F+   +        A + KL  L    G  +   AH A A
Sbjct: 109 ----------------RSQPFACSLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L+  +     +  
Sbjct: 153 DAEMAANLLQYLAGVLRQDH 172


>gi|16763100|ref|NP_458717.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29144582|ref|NP_807924.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|56414696|ref|YP_151771.1| exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|197363623|ref|YP_002143260.1| exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|213051586|ref|ZP_03344464.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213427175|ref|ZP_03359925.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213855476|ref|ZP_03383716.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|25513436|pir||AI1038 probable exonuclease STY4637 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505408|emb|CAD06758.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29140220|gb|AAO71784.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56128953|gb|AAV78459.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095100|emb|CAR60646.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 194

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 55/190 (28%), Gaps = 20/190 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N ++  D ET G         +   +  D          +             EA+ I G
Sbjct: 18  NDYLFIDTETTGLG-DDAEIVEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHG 69

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          +    + + F       + YN   FD    R  +  N   S    W
Sbjct: 70  ITNEMVAFAPA-WTDICGAVEELFRRFG--FVIYNA-DFDLRLIRQTYALNERPSEGAPW 125

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADV 181
                    +           +    P R +G    KL D A   G +    AH A AD 
Sbjct: 126 MLAAHSVCAM-------KLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKAHRALADC 178

Query: 182 YATLALVWLI 191
             TL LV  +
Sbjct: 179 KMTLGLVRAL 188


>gi|88800079|ref|ZP_01115649.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
 gi|88777205|gb|EAR08410.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
          Length = 238

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 24/195 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G +    DR  +   V  VDR+         ++  P  D     E V + GI
Sbjct: 4   VVLDTETTGLNPTKGDRIVEVGCVEMVDRKL--TGRHFHYYINPERD--IPDEVVAVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
              K         + +    + ++      +  +N  FD  +    F R     +     
Sbjct: 60  DNDKVKDSPK-FRDIA---VELWTWLEGAELVIHNAAFDMGFLNAEFER-----FAQEQR 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
               + + +  +        D ++        +   L  L    GI+  H   H A  D 
Sbjct: 111 EPFEKLETVCGV-------LDTLKVARDKHPGSKVSLDALCKRYGIDNSHRTLHGALLDS 163

Query: 182 YATLALVWLIREKKP 196
                +  ++   + 
Sbjct: 164 EILADVYLMLTGGQT 178


>gi|302334813|ref|YP_003800020.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084]
 gi|301318653|gb|ADK67140.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084]
          Length = 1001

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 31/222 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV+ D ET G         + A  R+ R     E  + F           PE   +T 
Sbjct: 55  EDFVVLDTETTGLSFRDCELIEIAAARI-RGGVVEERFQTF---VHPMGPIPPEISALTH 110

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+            +    + +F +     ++ +N      +       R+  D++    
Sbjct: 111 ISDLDVTDAP-SAVDAVAALSEFVA--GDPVLAHNATFDRTFVESVPGGRDVSDNW---- 163

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + R                   +S +L D+A A G +    H A ADV 
Sbjct: 164 ------IDTLALSRIA-------------LPRLSSHRLADMARAFGCD-SATHRATADVE 203

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
           A   +  ++      L   L D  +         ++ +   +
Sbjct: 204 ALAGMWRIMLVALMDLPSGLLDLLSTMHEEVDWQLRPILSYL 245


>gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 494

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 26/221 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV +D ET   +       Q   VR      +++ST  F   P      +P  + I GIT
Sbjct: 126 FVAFDVET--ANDDWGSICQIGLVRY-ENGVEVDSTSWFCTPPEPLNFFEPANIAIHGIT 182

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +    AE   ++  F        +  +N +FD             ++  +++  
Sbjct: 183 AEQVAGEPA-FAEVLPKMVDFV---GDLPLVAHNAQFDFTAISRACAAAGIEAPVFNF-- 236

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L + R+      +              +L  +A A G+E    HDA  D  A 
Sbjct: 237 ----GCSLALSRSSRLKFHN-------------HRLPTVAQALGVELRKHHDATEDARAC 279

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
             +   +  ++     ++    ++      +D + + P++ 
Sbjct: 280 AGITIELARRQNHQGGFIDFIHSQGFTLGSLDTERVYPVLR 320


>gi|170754352|ref|YP_001780953.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169119564|gb|ACA43400.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 855

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 25/186 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V++D E+ G ++  D   Q AG++++ + E IES + F   P        ++  + G
Sbjct: 493 ENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLI-PKKSV---GDSYLVHG 548

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + Q    +G  +    +   +F       +I  +N+ FD     +   R   +   +  
Sbjct: 549 FSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVTFDISILNSELERLSLEKASFK- 604

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               + +D LD+ R  Y                T+ KL+ L+     E  ++HDA  D+ 
Sbjct: 605 ----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647

Query: 183 ATLALV 188
           AT  ++
Sbjct: 648 ATKDVL 653


>gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
          Length = 569

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 26/221 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV +D ET   +       Q   VR      +++ST  F   P      +P  + I GIT
Sbjct: 201 FVAFDVET--ANDDWGSICQIGLVRY-ENGVEVDSTSWFCTPPEPLNFFEPANIAIHGIT 257

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +    AE   ++  F        +  +N +FD             ++  +++  
Sbjct: 258 AEQVAGEPA-FAEVLPKMVDFV---GDLPLVAHNAQFDFTAISRACAAAGIEAPVFNF-- 311

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L + R+      +              +L  +A A G+E    HDA  D  A 
Sbjct: 312 ----GCSLALSRSSRLKFHN-------------HRLPTVAQALGVELRKHHDATEDARAC 354

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
             +   +  ++     ++    ++      +D + + P++ 
Sbjct: 355 AGITIELARRQNHQGGFIDFIHSQGFTLGSLDTERVYPVLR 395


>gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 383

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A  R  +   V +      +                      +TGIT
Sbjct: 15  IVFVDLETTGGSTAEHRITEVGVVEIGPAG--VSRWSSL---VDPQQPIPSFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +      + F   N  +   +N  FD  + R  F R            
Sbjct: 70  NAMVRGAPT--FDVIA--PELFKRLNGKLFVAHNASFDRGFLRGEFRRVGL--------- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A                   L  L   + +   + H A AD    
Sbjct: 117 -AFDPDVLCTVRLSRALF----------PAEKRHGLDALVERHALVPSDRHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQRLH 173


>gi|332885444|gb|EGK05693.1| hypothetical protein HMPREF9456_02495 [Dysgonomonas mossii DSM
           22836]
          Length = 256

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 27/200 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N  + +D ET G D   DR  + + ++V    ++    E+   +   +      A  I G
Sbjct: 7   NPIIFFDLETTGTDTVKDRIVELSYLKVYPNGKE----EMKTRRINPEMPIPAGATAIHG 62

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ +          + ++ +          + G+N+ RFD       F R   D      
Sbjct: 63  ISDEDVKDCP-TFKQIAKSLADQME--GCDLAGFNSSRFDIPLLAEEFLRADVDIDFSKR 119

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              + +                                         +  NAH A+AD  
Sbjct: 120 KMIDVQI--------------------IFHKKEQRTLEAAYKFYCDKDLDNAHSAEADTL 159

Query: 183 ATLALVWLIREKKPKLFEYL 202
           AT  ++    +K P L   +
Sbjct: 160 ATYEVLKAQLDKYPDLENDM 179


>gi|115375897|ref|ZP_01463146.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca
           DW4/3-1]
 gi|310819816|ref|YP_003952174.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|115367075|gb|EAU66061.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392888|gb|ADO70347.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 219

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 21/199 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
                D ET G D +     + A +RVD R  + +   E    +P       PEA+ + G
Sbjct: 30  TLAFIDLETTGLDASRHEVLEVAILRVDARSLKVLAEYEA-RVQPTRLADAHPEALAVCG 88

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + ++     +   E    +    +     ++  +N  FD  +    +           +
Sbjct: 89  YSDEEWRDA-LPLREVLATVTPLLA---GTLVAGHNTSFDWGFLVEGYRSTELPLPSVDY 144

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R D   +   + A                S  L  LA   G+     H A AD  
Sbjct: 145 ----HRLDTASLAWPLLA-----------TGEVESLSLNALAKHFGLHRPTPHRAMADAR 189

Query: 183 ATLALVWLIREKKPKLFEY 201
             L +   +  +  +    
Sbjct: 190 CALEVARRLAVRMSRGGHM 208


>gi|328541691|ref|YP_004301800.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326411443|gb|ADZ68506.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 240

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 29/202 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + +D ET G D    DR  +  GV     +  + +   +      +      A  + G++
Sbjct: 4   IAFDTETTGLDPRNGDRLVEIGGV---ELFNHVPTGNTYHVYINPERDMPEAAFNVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V    F+  + +F +      +  +N  FD  +      R        +   
Sbjct: 61  AEFLADKPV----FAEIVDEFLAFVGDARLVIHNAAFDMGFINMELSRAGRLPIPRTQ-- 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182
                D L++ R  +   P+               L  L    GI++     H A  D  
Sbjct: 115 ---VLDTLELARRKHPMGPN--------------SLDALCGRYGIDNSRRTRHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
               +   +   +      +  
Sbjct: 158 LLAEVYLELIGGRQTALGLVLQ 179


>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
          Length = 1447

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 59/482 (12%), Positives = 133/482 (27%), Gaps = 51/482 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FVI+D ET G     +   +F  + + +   +IE  + FF KP    +P      ITGI
Sbjct: 388 KFVIFDLETTGLSAFYNEIIEFGAIVL-QNGIEIEKHQ-FFIKPT-GKIPSA-ITKITGI 443

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      +       +I +        ++  +N  FD  +         +   +    
Sbjct: 444 SQKMIDETAISWEIALEKITKIIKDS---VLVAHNAAFDFSFLEQ------FFRQKAKKS 494

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
             N   D L+V R               +    S  L+++A    IE+    AH A  D 
Sbjct: 495 LKNPIIDTLEVSR-------------FLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDA 541

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN--KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
                +      +            +  KN + +L   +     + +             
Sbjct: 542 KILTTIWKNFLAELKSQNINDLTSLSEIKNSIFELRPEKVFPKQLTIVAKNQIGIKKLYK 601

Query: 240 IAPVAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
           +  +A         +I  +                +  + T        V          
Sbjct: 602 LVSLANTENLISRPLIFYDHLQKDPDLLIGSGGPESLLIQTMLYFGPKNVAEFAHIFDFI 661

Query: 299 KCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           + P     + +   +    ++     K  +     L+         +    K        
Sbjct: 662 EIPPPSAFIHLVKREIFTKDQIEDMLKNLINLAKKLQIPAVAIGDVRYCLPKEKIFYELY 721

Query: 356 VDSQ---LYDGFFADVDRQIMDRILRT---------APEQLSTLNLPFSDRRLPELFFRY 403
           + ++     +    D   +  +    +         + E+L        D+   +L    
Sbjct: 722 IYAKGVGGVNHVLFDHREKEREDFRNSHIFPEKHFFSTEELKKEFEFLEDQ---QLIEEI 778

Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
             +N          ++ ++  K  L     +  + KL+    +   ++    L   +   
Sbjct: 779 VVKN--SNFVADLIENNIQIIKSGLYPPSFDNSEVKLKEFVYKKAYEKYGRFLPKLIENR 836

Query: 464 LQ 465
           ++
Sbjct: 837 IK 838


>gi|304413386|ref|ZP_07394859.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola
           LSR1]
 gi|304284229|gb|EFL92622.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola
           LSR1]
          Length = 242

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 68/230 (29%), Gaps = 35/230 (15%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V +        +   F      D L DPEA  I
Sbjct: 9   IVLDTETTGLNKVGAHYQGHRVIEIGAVEM-VNRRLTGNH--FHVYLKPDRLVDPEAYAI 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ ++    F    +  I   +N  FD  +    F     +    
Sbjct: 66  HGISDEFLADKP-TFADTAKTFLDFIRGADLII---HNASFDIGFLDYEFR--LLEQNSA 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             +   +  D L + R ++                    L  L     I++     H A 
Sbjct: 120 KIETFCTITDSLLLARQLFPG--------------KRNNLNALCDRYHIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
            D      +   +   +         +  +   ++  + + + P+V  + 
Sbjct: 166 LDAEILAEVYLAMTGGQT-----SLSFSMETDQQQQNNKEEIKPIVRPTS 210


>gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
 gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
          Length = 240

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 31/200 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           VI D ET G +          R  +   V V             +       L D EA+ 
Sbjct: 11  VILDTETTGMNQGAGAIFLGHRIIEIGCVEV-INRRLTGRHYHEY--INPQQLIDEEAIA 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI+ +         AE ++   +F    +   +  +N  FD  +  + F         
Sbjct: 68  VHGISNEYVANKPK-FAEIAQSFIEFI---DGAEVVAHNASFDISFMDHEFG--LLQPKG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
               +  +  D L + + ++    +               L  L    GI++     H A
Sbjct: 122 PKTADICAILDTLAIAKFLHPGQKN--------------NLDALCKRYGIDNSRRELHGA 167

Query: 178 KADVYATLALVWLIREKKPK 197
             D      +  L+   + K
Sbjct: 168 LLDAEILADVYLLMTGGQTK 187


>gi|108760097|ref|YP_630122.1| exonuclease [Myxococcus xanthus DK 1622]
 gi|108463977|gb|ABF89162.1| exonuclease [Myxococcus xanthus DK 1622]
          Length = 219

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 62/199 (31%), Gaps = 21/199 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
                D ET G D +     + A +RVD R  + +   E    KP       PEA+ + G
Sbjct: 30  TLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEA-RVKPTRLADAHPEALAVCG 88

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + ++     +   E    +    +     ++  +N  FD  +    + R+        +
Sbjct: 89  YSDEEWRDA-LPLQEVLATVTPLLA---GTLVAGHNTSFDWGFLVESYRRSELALPSVDY 144

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R D   +   + A                S  L  LA   G+     H A AD  
Sbjct: 145 ----HRLDTASLAWPLLA-----------TGEVESLSLNALAKRFGLHRPTPHRAMADAR 189

Query: 183 ATLALVWLIREKKPKLFEY 201
             L +   +  +  +    
Sbjct: 190 CALEVARCLAVRMARGGHM 208


>gi|325963971|ref|YP_004241877.1| DNA polymerase III subunit epsilon [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470058|gb|ADX73743.1| DNA polymerase III, epsilon subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 236

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 61/186 (32%), Gaps = 22/186 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET GR+    R    +   VD Q E +   E              EA  + GIT ++
Sbjct: 12  FDLETTGRNSRAARIVTASVTVVDHQAEVMREHEWLA---DPGVEIPTEASDVHGITTEQ 68

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A R+G    E +R +         +   +   N  +D         R             
Sbjct: 69  ARREGRPAHEVTREVAAALQELFDSNIPVIAFNASYDFTVLAAESARYGIPQL------- 121

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            +R+ +LD         P  +             L  L    G+   NAH + AD  ATL
Sbjct: 122 -TRFPVLD---------PYIMNKQVDRYRKGKRTLTALCEEYGVVLDNAHTSAADALATL 171

Query: 186 ALVWLI 191
            ++  +
Sbjct: 172 RVLDAM 177


>gi|317128725|ref|YP_004095007.1| exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473673|gb|ADU30276.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
          Length = 242

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 26/200 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V++D ET G      DR     G++V    + I+S E F+     +     E   +T IT
Sbjct: 58  VVFDLETTGFYPNNGDRILSIGGIKVKGD-KVIDS-ETFYSLINSNGGVSEEITKLTNIT 115

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +       +  +  + F S    C +  ++   +  + +++ +             
Sbjct: 116 EKDLIEAP-PINDVLQNFYTFMS---GCTLVAHHANHERSFMQHMTWSIL---------- 161

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                      R  +            +       L +     GI     H A  D  AT
Sbjct: 162 ---------KSRFEHRIIDTAFLTKIVEPNKNLVSLDECCDHYGITIKKRHHALYDAIAT 212

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L      +   L      
Sbjct: 213 AQLWTESVREIQNLGFQHLK 232


>gi|46371957|gb|AAS90610.1| conserved hypothetical protein [uncultured soil bacterium]
          Length = 195

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 63/196 (32%), Gaps = 23/196 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   FV+ D ET G     D   Q   +  D +   + +T V   +P    +       I
Sbjct: 22  MHGDFVVLDTETTGLGP-TDEVVQIGII--DSKGRTVLNTMVRPTRPVPSVV-----TRI 73

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G+T +K        ++    +    +      +   N+ FD              +   
Sbjct: 74  HGLTNEKLAEA-SPFSDLYVSLSSILA---GVTVIAYNMDFDWRMLVQSAGLYGLPA--- 126

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +   D   A+ A++     +  +       KL +      I  V AHDA +D
Sbjct: 127 --------FRTGDRQCAMKAYAQGHGMFDLKRRTYAYHKLGEACRHQKIPVVQAHDALSD 178

Query: 181 VYATLALVWLIREKKP 196
              TLALV  + E   
Sbjct: 179 ARMTLALVRKMAEFHS 194


>gi|116255734|ref|YP_771567.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260382|emb|CAK03486.1| putative exonuclease/polymerase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 326

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 64/217 (29%), Gaps = 32/217 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           VI D ET G +   D   +   V    D      +   ++           PE   +TGI
Sbjct: 75  VILDTETTGLNHRNDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +++ +  R + +        +I  +N  FD  +                  
Sbjct: 135 TDAMVEGQ-LIDIQSLRTLIE-----PADLIIAHNAGFDRPFCEA--------------- 173

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +    A++    +      G    KL  L    G  H   H A  D +A
Sbjct: 174 --------FSKIFTGKAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHEG-HRAVDDCHA 224

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
            L ++   +      F  LY    ++++R   +    
Sbjct: 225 LLEILDREQRDGESPFTELYRASQRSRIRIFAEHSPF 261


>gi|241668417|ref|ZP_04755995.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876950|ref|ZP_05249660.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842971|gb|EET21385.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 230

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 66/241 (27%), Gaps = 24/241 (9%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V    +   +   F+C P   Y  +  A+ + G+T
Sbjct: 5   VFIDTETTGFDYKIGNRIIEFGAVEV-IDRKVTGNNLHFYCNPN--YEVEAGALAVHGLT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E   ++  F       I   +N  FD  +          + Y     +
Sbjct: 62  NEFLADKP-SFEENVDQMIDFLRGAEIII---HNAAFDVPFINWELGLLKNNKYGTLEQH 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D L++ R  +    +               L  L        +H   H A  D  
Sbjct: 118 VAKIVDSLELARKKHPLQKN--------------NLDALCKRYHIRNDHRTFHGALLDSE 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
               +   +   +  L        +K+ +    D   +                   I  
Sbjct: 164 LLADVYLAMTGGQTNLVLQTTKNASKDTIDIDFDKLKLRSANETIINISEHDKYLCNILK 223

Query: 243 V 243
           +
Sbjct: 224 L 224


>gi|167771957|ref|ZP_02444010.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM
           17241]
 gi|167665755|gb|EDS09885.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM
           17241]
          Length = 270

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 75/217 (34%), Gaps = 28/217 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDPEAV 58
              +++D ET G D   D+  + A +R+++            + F  +  +      + V
Sbjct: 36  KALILFDTETSGLDFDKDQIIELAALRIEQTAAKGLRIAGQMDQFI-RLPEGQQLTEKIV 94

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            +TGIT +    +GV   + +    +  +      ++  +N +FD  + R++        
Sbjct: 95  ELTGITDRILEAEGVAPHKAATAFAKLINAGDGPVLLVAHNAQFDLLFVRSLLKGVKL-- 152

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R + LD +       P   +               +A     +  N+H A
Sbjct: 153 --------APRLEFLDTLTVYKDRRPYPHKLADAI----------IAYDLDGKVKNSHRA 194

Query: 178 KADVYATLALVWLI--REKKPKLFEYLYDYRNKNQLR 212
             DV A L ++  +        L+  L+ Y  K  + 
Sbjct: 195 IDDVTAMLEVLRAMGEERDDLALYVNLFGYNAKYGVN 231


>gi|226945027|ref|YP_002800100.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ]
 gi|226719954|gb|ACO79125.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ]
          Length = 244

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 55/195 (28%), Gaps = 25/195 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G  V    R  +   V + +          F      D   D  AV + GIT
Sbjct: 4   VVLDTETTGMPVTEGHRIIEIGCVEL-QGRRLTGRH--FHVYLQPDRTVDEGAVAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +    +F       I   +N  FD  +  + F R           +
Sbjct: 61  DDFLADKPR-FADIAEEFFEFIKGAQLII---HNAAFDIGFIEDEFSRLGQTERADVNAH 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             +  D L + R  +    +               L  L     +++ N   H A  D  
Sbjct: 117 -CTVLDTLLMARERHPGQRN--------------SLDALCKRYDVDNSNRDLHGALLDAE 161

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 162 ILADVWLAMTGGQTH 176


>gi|325289205|ref|YP_004265386.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964606|gb|ADY55385.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 410

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 56/195 (28%), Gaps = 29/195 (14%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              + + D ET G      DR  + A + ++ + E  +  E        D    P    I
Sbjct: 1   MPEYAVLDLETTGLFPEKHDRIIEVAIIILNSKGEIADQYETL---VNPDRDLGP--THI 55

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I+            + +  I    +      I  +NI +D  + ++ F R   +    
Sbjct: 56  HKISAGMVSEAPK-FKDIAGDIIHCLA---GKHIIGHNIAYDYRFIKHEFRRLKVEIPEP 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                                S         +      KL+ L     I   + H A  D
Sbjct: 112 Q-------------------MSCTFHLTRKVEPDLPCRKLEALCSYFDIPLEHKHAAYFD 152

Query: 181 VYATLALVWLIREKK 195
            YAT  L   + +K 
Sbjct: 153 CYATAVLFQTLLKKH 167


>gi|315127113|ref|YP_004069116.1| hypothetical protein PSM_A2044 [Pseudoalteromonas sp. SM9913]
 gi|315015627|gb|ADT68965.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 718

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 28/176 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     +R  +   V++ +Q E +++          +         +TGI 
Sbjct: 554 YSVVDIETTGGLKGGNRITEIGIVKI-KQGEIVDTWTTL---INPERPIPRFITSLTGIN 609

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    + +E +  +    S     I   +N+ FD  + +    R            
Sbjct: 610 DAMVSNAP-IFSEIAAPLLNQLS---GSIFVAHNVNFDYGFIKKELERIGI--------- 656

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            N +   L  +                  G  S+ L +L+    ++  N H A  D
Sbjct: 657 -NFKMPKLCTVVESRKAF----------KGLKSYSLGNLSAHFNLDLTNHHRALDD 701


>gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
 gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
          Length = 896

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 82/238 (34%), Gaps = 38/238 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAV 58
            V++D ET G +V  D   + A +R+ +  E +      + +     LP      +P   
Sbjct: 514 IVVFDTETTGLNVFQDDIIEIAAIRI-KGGEVVGEPLDLYIETDKPILPMLGDKENPMYA 572

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
                  + +  + +  ++  RR   F +   T  I  +N  +D     N   R      
Sbjct: 573 IYH---EKMSTGELLSPSDALRR---FLAYVGTSPILGHNANYDYNILDNNLQR---YCN 623

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                +    +D L ++R +                  S+KL+ L     +  VN+H A 
Sbjct: 624 DTMQAHDIRCFDSLKLIRLLAPSLH-------------SYKLESLLETFQLAGVNSHQAI 670

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
            DV AT++LV L  EK  +          + Q    I    + P  +V       R  
Sbjct: 671 DDVKATVSLVRLCAEKARE---------KQAQQEAFIHHPKVKPFANVLRSNYGERYR 719


>gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 382

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 50/189 (26%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   +  R  +   V V      +                      +TGIT
Sbjct: 15  IVFVDLETTGGSTSEHRITEVGVVEVGPTG--VTRWSSL---IDPQQPIPSFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E+  +  +++     N  +   +N  FD  + R+ F R            
Sbjct: 70  NDMVHGAPTFES-IAPALYERL---NGKLFVAHNASFDRGFLRSEFRRAGL--------- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A             G     L  L   + +   + H A AD    
Sbjct: 117 -AFDPDVLCTVRLSRALF----------PGEKRHGLDALVERHALVPSDRHRALADADLI 165

Query: 185 LALVWLIRE 193
                 +  
Sbjct: 166 WQFWQRLPT 174


>gi|296444995|ref|ZP_06886956.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
           OB3b]
 gi|296257416|gb|EFH04482.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
           OB3b]
          Length = 242

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G D A   R  +   V +         T  F+     +     EA  + G++
Sbjct: 4   IVFDTETTGLDPAKGHRIVEIGAVEI-SNLIPTGRTFHFY--LDPERDMPEEAFRVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E +    +F +      +  +N  FD  +          ++       
Sbjct: 61  TAFLTGQKK-FREIAEAFLEFVADAQ---LVAHNAEFDMRFVNAELAMLGLEAIAA---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
            +   D L + R ++  + +               L  L    G++    + H A  D Y
Sbjct: 113 -DRVVDTLTIARRLHPGAAN--------------SLDALCQRYGVDSSRRDKHGALLDSY 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|326386170|ref|ZP_08207794.1| DNA polymerase III, epsilon subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209395|gb|EGD60188.1| DNA polymerase III, epsilon subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 230

 Score = 83.7 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G D    DR  +   V       +I +  VF C    D     EA  + G++
Sbjct: 4   IVFDTETTGLDPRNGDRLVEIGCV---ELVNRIATGSVFHCYFNPDRDMPAEAEAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      +E +  +  F        +  +N  FD  +  +                
Sbjct: 61  AAFLSDKPK-FSERAAELLDFL---GDAPLVAHNAGFDFGFLNSELTFCGMGEVSR---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
            +   D + + R  +  +                 L  L    GI+  H   H A  D  
Sbjct: 113 -DRMVDTVAIARRKHPGA--------------KLSLDALCSRYGIDRSHRTKHGALLDAE 157

Query: 183 ATLALV 188
               L 
Sbjct: 158 LLAQLY 163


>gi|190895636|ref|YP_001985928.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 652]
 gi|190699581|gb|ACE93665.1| probable polymerase protein, epsilon subunit [Rhizobium etli CIAT
           652]
          Length = 326

 Score = 83.7 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 61/217 (28%), Gaps = 32/217 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G +   D   +   V    D      +   ++           PE   +TGI
Sbjct: 75  VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGSIGDIVGIYGGLQQPSRPIPPEVTRLTGI 134

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +      R +          +I  +N  FD  +                  
Sbjct: 135 TDAMVEGQVID----IRSLSDLIE--PADLIIAHNAGFDRPFCEA--------------- 173

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +    A++    +      G    KL  L    G  H   H A  D +A
Sbjct: 174 --------FSPLFTGKAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHEG-HRAVDDCHA 224

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
            L ++   + +    F  LY    ++++R   +    
Sbjct: 225 LLEILDRQQGEGESPFAELYRASQRSRIRIFAEHSPF 261


>gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
 gi|133739399|emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
          Length = 234

 Score = 83.7 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 29/196 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G +    DR  +   V  +DR+     +   F      +   +  A+ + G+
Sbjct: 4   IVLDTETTGLNPRSGDRIIEIGCVELIDRRL----TGNNFHHYINPERDSEEGALAVHGL 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE       + S      +  +N  FD  +      R     ++    
Sbjct: 60  TTEFLSDKPK-FAEIVDEFRDYISGAE---VVIHNAPFDVGFLDAELKRVEMPLFKDHVG 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
                  +LD ++                       L  L    G+   H   H A  D 
Sbjct: 116 G------ILDTLQQAKELH-----------PGKRNSLDALCDRYGVSNAHRTLHGALLDA 158

Query: 182 YATLALVWLIREKKPK 197
                +   +   +  
Sbjct: 159 ELLAEVYLAMTRGQNS 174


>gi|330810139|ref|YP_004354601.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378247|gb|AEA69597.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 253

 Score = 83.7 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 57/203 (28%), Gaps = 31/203 (15%)

Query: 1   MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPE 56
           M N  V+ D ET G  V    R  +   V      E I        F      D   D  
Sbjct: 1   MANRSVVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEG 54

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +  +      AE +    +F       I   +N  FD  +  N F      
Sbjct: 55  AIGVHGITNEFLVGKPR-FAEVADEFFEFIQGAQLII---HNAAFDVGFINNEFALMGQH 110

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                     +  D L + R  +    +               L  L    G+++     
Sbjct: 111 DRADI-TQHCTILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGREL 155

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +   +   +  
Sbjct: 156 HGALLDSEILADVYLTMTGGQTS 178


>gi|304387160|ref|ZP_07369404.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC
           13091]
 gi|304338764|gb|EFM04874.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC
           13091]
 gi|325201850|gb|ADY97304.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240149]
          Length = 470

 Score = 83.7 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRVGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 183 YLEYSLSEHGVEAWIRQCFRLMNPK 207


>gi|254805232|ref|YP_003083453.1| putative DNA polymerase III subunit [Neisseria meningitidis
           alpha14]
 gi|254668774|emb|CBA06684.1| putative DNA polymerase III subunit [Neisseria meningitidis
           alpha14]
          Length = 461

 Score = 83.7 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+ ++         V                 +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV-----NPQKPIPQFVAGLTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRVGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +          +   N  
Sbjct: 174 YLEYSLSEHGVEAWIRQCFRLMNPK 198


>gi|153939167|ref|YP_001390679.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum F str. Langeland]
 gi|152935063|gb|ABS40561.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum F str. Langeland]
          Length = 855

 Score = 83.7 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 25/186 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V++D E+ G ++  D   Q AG++++ + E IES + F   P        ++  + G
Sbjct: 493 ENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLI-PKKSV---GDSYLVHG 548

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + Q    +G  +    +   +F       +I  +N+ FD     +   R   +   +  
Sbjct: 549 FSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVTFDISILNSELERLSLEKASFK- 604

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               + +D LD+ R  Y                T+ KL+ L+     E  ++HDA  D+ 
Sbjct: 605 ----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647

Query: 183 ATLALV 188
           AT  ++
Sbjct: 648 ATKDVL 653


>gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
 gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
          Length = 1461

 Score = 83.7 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 61/478 (12%), Positives = 131/478 (27%), Gaps = 51/478 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V +D ET G         ++  + +    +    T+ F           P    +TGIT
Sbjct: 426 YVSFDIETTGLCPRFAEIIEYGSLPIHSNMKYGRKTQFFIKCQEP---IKPFTENLTGIT 482

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                + G+   E  ++I+   +      + +N               NF          
Sbjct: 483 NAMIEKSGLELKEALQKIYNDLN--GKIALAHNARFD----------FNFLKEKFRQAKI 530

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182
                 ++D +                       KL+D+A   G+E+    AH    D  
Sbjct: 531 EFPNVTVIDTLIVSRIVF----------PQNKKHKLEDVATRVGVEYDPTVAHRGDYDAK 580

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN---KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
               +   + ++  K     ++  N   K+ L        ++ +               L
Sbjct: 581 VLAEVWVALMDELGKKGILTFNQLNSYIKDDLYNKTFSYEVSTIAKNYEGLKEQYGY--L 638

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL---FTSHDELKGLVPVPIKEVH 296
              +  +          +L+        L S  L  RL   +      + +  + + +  
Sbjct: 639 TTALTKNLYNGPKTFMEDLAAH-SENLLLGSGTLKSRLLDVYFYSSHEEFIKELKLYDYI 697

Query: 297 LNKCPILMPIDYCKKEH-FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-- 353
               P +       +    E+  I  K  ++     ++        K +      +    
Sbjct: 698 EVPAPQVFSHWIDNEFITQEQLEISLKEIIKEAIKAKKIVVATADVKYLNLYDKVAYEVL 757

Query: 354 ------QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN 407
                 ++    L++   A      +        E++        D++L E        N
Sbjct: 758 VYAKGIKNSRHYLFNYEQAKNGNIPIPNQDYLTTEEMLEQFAFLKDKQLIE----DIVIN 813

Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
             + +            K  L   + E+   KL  L  E    +  E L   + E ++
Sbjct: 814 NTNKI-ADMCDKIQ-VIKDKLYTPKFEDSGKKLHDLVYETAYKKYGEKLPKIVEERIE 869


>gi|300173471|ref|YP_003772637.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811]
 gi|299887850|emb|CBL91818.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811]
          Length = 801

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 71/203 (34%), Gaps = 28/203 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             FV+ D ET G+ V    R  Q     + +Q + ++  E F        L D     +T
Sbjct: 5   ETFVVVDLETTGQSVTKGGRIIQIGMTFI-KQRQIVDHFESF---VNPGQLIDRNIQQLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I  +        E E +  +       N  II  +N+ FD  Y  + F R  +      
Sbjct: 61  HIAQKDVKNAPYFE-ELAPMLQNLL---NNTIIIAHNVNFDYPYLNDEFRRTGFPEL--- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               +S  D + + +                  A  ++L DL     I   NAH A AD 
Sbjct: 114 ---TSSAIDTVQLAQI-------------LLPTAPGYRLVDLTTYLDITLNNAHRANADA 157

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
           +AT  L   + ++  +L   +  
Sbjct: 158 HATARLFLKLWQRAEQLPAIVLK 180


>gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 472

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 58/185 (31%), Gaps = 28/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGI 63
           FV +D ET   + A     Q   VRV     ++E    + C P       DP  V I GI
Sbjct: 122 FVGFDVET--ANPAWGSICQIGLVRV-IDGREVERV-TWLCTPPPGLDEFDPSNVAIHGI 177

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +            ++RI +         +  +N +FD    R        D       
Sbjct: 178 SAETVEGSPP----AAQRIDELVEFVGELPVVAHNAQFDATALREACRAVGRDIPNIM-- 231

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                            F+    Q  +      + +L  LA   G++    HDA  D  A
Sbjct: 232 -----------------FACTLAQSRAAKLKVQNHRLPTLAEHFGVQLEKHHDAGEDAAA 274

Query: 184 TLALV 188
              ++
Sbjct: 275 CAGIL 279


>gi|255615473|ref|XP_002539676.1| DNA polymerase III epsilon subunit, putative [Ricinus communis]
 gi|223503630|gb|EEF22707.1| DNA polymerase III epsilon subunit, putative [Ricinus communis]
          Length = 205

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 33/192 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD---RQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D+  +   V  D   +     +    F       +   PE+  +  
Sbjct: 5   VILDTETTGTDYVQDKVIELGMVAFDYCPQTGMIGDVHGTFNQLEDPGFPIPPESTKVHH 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +      + + E      + F  P + II +N+     +                  
Sbjct: 65  ITDEMVAGKSINDEEV-----EAFIKPASIIIAHNSRFDRRFVE---------------- 103

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                RW +         ++    Q     +G  S KL+ LA  +G  H   H A  D +
Sbjct: 104 ----PRWPIF----QSKPWACTFAQIDWDAEGLGSSKLEFLAYRSGF-HYEGHRASTDCH 154

Query: 183 ATLALVWLIREK 194
           A L ++     +
Sbjct: 155 ALLEVLHCATTE 166


>gi|326803355|ref|YP_004321173.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650663|gb|AEA00846.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 173

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 31/191 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V +D ET G      +  Q + V   R  ++I + +        D     +   +TGI+
Sbjct: 13  YVAFDLETTGLG-FSSKIIQISAVHF-RDGKEIGAFDQL---VNPDRPIPAKITQLTGIS 67

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    ++ +       F       + GYN+ +FD    R     +          +
Sbjct: 68  DADVYLSPTID-QVIHDFMAFIKDLP--LAGYNSKKFDIPMLRANTGIDL---------S 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G    D+L++ R                    ++KL  +    GI++  AHD+  D  AT
Sbjct: 116 GLPHMDVLEMARL-------------SPIRTPNYKLTTVKAHYGIQN-RAHDSLNDSRAT 161

Query: 185 LALVWLIREKK 195
             ++   R+  
Sbjct: 162 ALILEEFRKGN 172


>gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
 gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
          Length = 235

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V++D ET G +    DR  + A + +       +           +     EA  + G+T
Sbjct: 5   VLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTL---IDPERDIPAEASRVHGMT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE +  + +FF+      +  +N  FD  +    F R            
Sbjct: 62  SADVAGKPK-FAEIAAELLEFFAE---DPLVAHNAPFDFGFLDAEFARIGR--------- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                  LD  R I   +    ++P          L  L     I+      H+A  D  
Sbjct: 109 -----AALDRARMIDTLALAKQRFPGMP-----NSLDALCRRFDIDLSARTTHNALLDCK 158

Query: 183 ATLALV 188
               + 
Sbjct: 159 LLAEVY 164


>gi|255316545|ref|ZP_05358128.1| DNA polymerase III PolC [Clostridium difficile QCD-76w55]
          Length = 285

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 71/270 (26%), Gaps = 28/270 (10%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           N FV+ D ET    +    R  +   V++ +  E +++          +     +   +T
Sbjct: 15  NEFVVVDIETTAFSIQKGGRILEIGAVKI-KNGEIVDNFSTL---VNPELKIPKKITELT 70

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            IT         +     ++ ++F S     +I  +N  FD       + R    +    
Sbjct: 71  KITNDMVKDAPYI-GNVLQKFNEFISDS---VIVAHNASFD-------WDRFLKPALATI 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                        +++ +                    L DL     +     H A  D 
Sbjct: 120 ------------GIKSSHKVMDTVSLSKFTFPDKKKHTLIDLCSYLEVPLEKNHRAIDDA 167

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT      ++    +           N++    +I+    +V     +        L  
Sbjct: 168 IATAKCFLKLKALNAEKLNDNIQVEFFNEINCDENIEVCKSIVIKRVKYWEKSKMKRLYV 227

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSV 271
             +      ++              DL   
Sbjct: 228 NFSSGVNRGEAYFNILTKTWYIKKFDLQID 257


>gi|228471317|ref|ZP_04056120.1| exonuclease [Porphyromonas uenonis 60-3]
 gi|228306894|gb|EEK16002.1| exonuclease [Porphyromonas uenonis 60-3]
          Length = 255

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V +D E  G D+  DR  +   +++    E+I    V   +   +     E+  I GIT
Sbjct: 9   LVFFDIEATGLDITNDRIIELTILKLMPDGERI----VRTRRFNPEMPIPAESTAIHGIT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         ++ + +        + GYN+ RFD       F R   +        
Sbjct: 65  DDDVRDCP-PFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVE-------- 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +D++   +                       +      EH+ AH A+AD  AT
Sbjct: 114 -------VDLLAMQHIDVQTIFH-----KMEPRTLEGAVRFYCHREHIGAHGAEADTIAT 161

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
           L ++    +K      +     +
Sbjct: 162 LDVLMAQLDKYGDELPHSVKELS 184


>gi|238784821|ref|ZP_04628822.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
 gi|238714237|gb|EEQ06248.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
          Length = 259

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 62/212 (29%), Gaps = 30/212 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 14  IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +    +F       I   +N  FD  +  + F     D  + 
Sbjct: 71  HGISDEFLADKP-TFADIAPEFLEFIRGAELII---HNAAFDIGFMDHEFRMLQQDIPKT 126

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 127 E--TFCTITDSLLMARRLFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 170

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            D      +   +   +  L   +   +++N 
Sbjct: 171 LDAEILSEVYLAMTGGQTSLTFSMEGDQSQND 202


>gi|193215454|ref|YP_001996653.1| DNA polymerase III subunit epsilon [Chloroherpeton thalassium ATCC
           35110]
 gi|193088931|gb|ACF14206.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC
           35110]
          Length = 229

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 19/200 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           FV++D ET G DV  D+      V + D   +  +S E    + A     D E++ + GI
Sbjct: 44  FVVFDTETTGLDVKKDKIISIGAVAISDFAIQVADSFETLIRQEASG---DKESIPVHGI 100

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +        +      +  F S     ++  ++  FD         R F         
Sbjct: 101 LKKDLAMAATEQ----GALESFLSYIAGSVLVAHHAMFDIEILNQALGRFFDLKIFN--- 153

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D  D  +       +   + S+D  A  + L  L     I   + H A  D + 
Sbjct: 154 ---AVIDTADFAK-----RIEKGPFSSQDTKAGDYSLDKLCERYRIPIYDRHTAPGDAFI 205

Query: 184 TLALVWLIREKKPKLFEYLY 203
           T  L  ++     K      
Sbjct: 206 TAQLFQILLYHAEKKRILTL 225


>gi|194333877|ref|YP_002015737.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris
           aestuarii DSM 271]
 gi|194311695|gb|ACF46090.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris
           aestuarii DSM 271]
          Length = 189

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 21/193 (10%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G + A     Q   + ++     +E      C P +     P+A+ I+G    + 
Sbjct: 11  DVETTGTNPAKHGIIQIGAI-IEVDGVVVEECN-LKCAPHEGAEISPDALAISGTERSEL 68

Query: 69  LRDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
                   E   +   F S         + C     NI FD  +    ++R+  D Y   
Sbjct: 69  ESRMTSH-EAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFI-QAWFRHHGDKYGIG 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L ++                      ++L+ +    GI   +AHDA +D+
Sbjct: 127 SFINWRMLDPLPLLFIKDFTRQIT---------LPDYRLETVCRHFGIAL-HAHDAMSDI 176

Query: 182 YATLALVWLIREK 194
            AT  L+  +  +
Sbjct: 177 RATRELLLKLLYQ 189


>gi|331018941|gb|EGH98997.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 204

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 52/201 (25%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G       R  + A V +  Q   +E  +                  
Sbjct: 1   MLERVAVIDFETTGISPNPGCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+          E      +  F     +  +  +N  FD  +      R       
Sbjct: 57  LTGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSRIQR---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178
                           +   +F+   +       GA + KL  L     +     AH A 
Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152

Query: 179 ADVYATLALVWLIREKKPKLF 199
           AD      L   +  +     
Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173


>gi|213966786|ref|ZP_03394937.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301383295|ref|ZP_07231713.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302062466|ref|ZP_07254007.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302133448|ref|ZP_07259438.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928636|gb|EEB62180.1| exonuclease [Pseudomonas syringae pv. tomato T1]
          Length = 204

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 52/201 (25%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G       R  + A V +  Q   +E  +                  
Sbjct: 1   MLERVAVIDFETTGISPNPGCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+          E      +  F     +  +  +N  FD  +      R       
Sbjct: 57  LTGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSRIQR---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178
                           +   +F+   +       GA + KL  L     +     AH A 
Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152

Query: 179 ADVYATLALVWLIREKKPKLF 199
           AD      L   +  +     
Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173


>gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 423

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 46/188 (24%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   +  R  +   V V      +                      +TGIT
Sbjct: 54  IVFVDLETTGGSTSEHRITEVGVVEVGPAG--VTRWSSL---VDPQQPIPSFIQQLTGIT 108

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +      + F+  N  +   +N  FD  + R  F R            
Sbjct: 109 NAMVRGAPT--FDAIA--PELFARLNGKLFVAHNASFDRGFLRGEFRRAGISFDP----- 159

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A                   L  L   + +   + H A AD    
Sbjct: 160 -----DVLCTVRLSRALF----------PSEKRHGLDALVERHSLVPSDRHRALADADLI 204

Query: 185 LALVWLIR 192
                 + 
Sbjct: 205 WQFWQRLH 212


>gi|27468061|ref|NP_764698.1| dinG protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866955|ref|YP_188602.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus epidermidis RP62A]
 gi|251810883|ref|ZP_04825356.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876111|ref|ZP_06284978.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis SK135]
 gi|293366576|ref|ZP_06613253.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81819394|sp|Q5HP88|DING_STAEQ RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81842831|sp|Q8CP71|DING_STAES RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|27315606|gb|AAO04740.1|AE016747_237 dinG protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637613|gb|AAW54401.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus epidermidis RP62A]
 gi|251805563|gb|EES58220.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295136|gb|EFA87663.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis SK135]
 gi|291319345|gb|EFE59714.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329725381|gb|EGG61864.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU144]
 gi|329735254|gb|EGG71546.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU045]
 gi|329737465|gb|EGG73719.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU028]
          Length = 902

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 30/232 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G  +  D   Q     V +  + I++          D    P    +T I
Sbjct: 5   TFAVVDLETTGNQLDYDEIIQIGITFVRQN-QVIDTYHS---MIRTDLEIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  ++      E +  I+Q       C+   +NI FD  + +  F +           
Sbjct: 61  EEEMLVQAPY-FNEVADDIYQLIKD---CVFVAHNISFDLNFIKKAFEKCNI------QF 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++             +        S++L  LA ++ I   NAH A  D   
Sbjct: 111 KPKRVMDTLEL-------------FKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATT 157

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
           T     L+ +   K  +   D + +          ++  ++        ++ 
Sbjct: 158 T---AKLMIKAFEKFEQLHLDTQKQLYYLSKNLKYDLYHILFEMVRNYQTKP 206


>gi|330822675|ref|YP_004385978.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
 gi|329308047|gb|AEB82462.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
          Length = 209

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 30/178 (16%)

Query: 1   MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M +   + D+ET G   A   R  + A V ++ +   ++                P    
Sbjct: 1   MPSPIAVIDFETTGMTPAQGARATEVAIVLMEGE-RVVDRFASLM---KTGVWIPPFITR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT          E+   R   +F        +  +N  FD  + ++       D   
Sbjct: 57  LTGITNAMVDAAPAAES-VMREAARFV---GDAPMVAHNAAFDSRFWQSELRHAGLD--- 109

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176
                            A + F+   +        A S  L  L    G+     AH 
Sbjct: 110 -----------------APHPFACTVLLSRRIYPDAPSHSLGRLTDHLGLPRTGRAHR 150


>gi|218461621|ref|ZP_03501712.1| DNA polymerase III subunit epsilon [Rhizobium etli Kim 5]
          Length = 115

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G D  +DR  +  G+ +   +    +T   +  P  D    P+A+ + GIT 
Sbjct: 4   IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           +         AE +  I  FF          +N  FD  +    F R         
Sbjct: 62  EFLKDK-KAFAEVAEEILAFFGDAK---WIAHNATFDMGFINAEFARIGLPPILPE 113


>gi|300727971|ref|ZP_07061349.1| exonuclease [Prevotella bryantii B14]
 gi|299774813|gb|EFI71427.1| exonuclease [Prevotella bryantii B14]
          Length = 279

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 28/200 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAV 58
           +T   +I+D ET G D+  DR  Q + ++V    E+   +           +        
Sbjct: 5   LTKPLIIFDLETTGLDMVNDRIIQISYIKVMPNGEEKRGDEL------VNPEKPIPAFVS 58

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++         E   ++   F        G+N+ RFD       F R   D  
Sbjct: 59  DLTGITNEQVKNAP-TFKEIGTKLADIFK--GCDFAGFNSNRFDIPLLCEEFLRAGIDFD 115

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                +     D   +         +     +     T  K++D           AH A 
Sbjct: 116 F----SKCRLIDAQTIFHK-----MEKRNLAAAYKFYTGHKMED--------DFEAHRAD 158

Query: 179 ADVYATLALVWLIREKKPKL 198
            D  AT  ++    +     
Sbjct: 159 QDTEATYRVLQGELDMYDPD 178


>gi|269964031|ref|ZP_06178337.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831250|gb|EEZ85403.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 249

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
           FV  D+ET G +   D       V        +   +    +      +   + E+V I 
Sbjct: 59  FVSVDFETTGLNAEEDAILTIGLVPF-----TLGRVQCSGSRHWVVNPNRELNEESVVIH 113

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +      +E +    I    +     I+  +    +  +  N    +  +  +  
Sbjct: 114 GITDSEVKNAPQLE-QILDAILDALA---GKIVVVHYKNIERQFFNNALLNSVGEGIQ-- 167

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D LD+  AI     +G     +     S +L        +     H A  D 
Sbjct: 168 ----FPVVDTLDIEYAIQRRECEGWLNKLKGKKPGSVRLGHARERYHLPAYQPHHALTDA 223

Query: 182 YATLALVWLIREKK 195
            AT  L+    +  
Sbjct: 224 LATAELLQAQLQYH 237


>gi|226310490|ref|YP_002770384.1| hypothetical protein BBR47_09030 [Brevibacillus brevis NBRC 100599]
 gi|226093438|dbj|BAH41880.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 52/200 (26%), Gaps = 26/200 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G      D       V +  +   +   + F+          P    +TGIT
Sbjct: 54  VVVDLETTGFYPDHGDAIISMGAVAMRGEHLLLG--DSFYTLVNPGRAIPPHIRSLTGIT 111

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                            + +FF       +  ++ R +  + R+  ++     +      
Sbjct: 112 DDMVADAPP----LLEALSRFFQYVGDRPLVAHHSRHEREFLRSGLWKTSRRPFT----- 162

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +LD M  I   +                 L  L  A+ I     H A  D  A 
Sbjct: 163 ----HRMLDTMLLIRLLNNPIGNG----------SLDALCAAHDIPISRRHHAYCDALAA 208

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L      K          
Sbjct: 209 GTLWAKYLVKAQSQGFTNLR 228


>gi|238854632|ref|ZP_04644962.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 269-3]
 gi|260664425|ref|ZP_05865277.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|282932977|ref|ZP_06338374.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
 gi|238832422|gb|EEQ24729.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 269-3]
 gi|260561490|gb|EEX27462.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|281303012|gb|EFA95217.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
           jensenii 208-1]
          Length = 936

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 27/201 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G     DR  QF    + +  + I++          +         +TGI 
Sbjct: 10  FAVVDLETTGTRRGQDRIIQFGCAII-KNRQIIKTYSFL---INPEADIPQAVQNLTGIK 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P   +   V   +++ +I          +   +NI FD  +       N +         
Sbjct: 66  PTDVINQPV-FKKYAAQIEDILQD---TVFVAHNINFDLPFLNAELAANSFP------KL 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   D +++ +  +                 S++L DL  +  ++H N H A +D YAT
Sbjct: 116 HNRAIDTVELSKIAF-------------PTLPSYRLSDLTHSLNLKHTNPHQADSDAYAT 162

Query: 185 LALVWLIREKKPKLFEYLYDY 205
            +L+  I +K   L +   + 
Sbjct: 163 ASLLLKIFDKLETLPQSTLNT 183


>gi|115379647|ref|ZP_01466730.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1]
 gi|310819920|ref|YP_003952278.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|115363357|gb|EAU62509.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1]
 gi|309392992|gb|ADO70451.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 219

 Score = 83.7 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 61/199 (30%), Gaps = 21/199 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
                D ET G D +     + A +RVD R  + +   E    +P       PEA+ + G
Sbjct: 30  TLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEA-RVQPTRLADAHPEALAVCG 88

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + ++     +   E    +    +     ++  +N  FD  +    + R          
Sbjct: 89  YSDEEWRDA-LSLEEVLATVTPLLA---GTLVAGHNTSFDWGFLVEGYRRTAL------- 137

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              +  +  LD     +     G           S  L  LA   GI     H A AD  
Sbjct: 138 TLPSVDYHRLDTASLAWPLLATG--------EVESLSLNALARHFGIHRPTPHRAMADAR 189

Query: 183 ATLALVWLIREKKPKLFEY 201
             L +   +  +  +    
Sbjct: 190 CALEVARRLAVRMSRGGHM 208


>gi|327194132|gb|EGE61003.1| putative polymerase protein, epsilon subunit [Rhizobium etli
           CNPAF512]
          Length = 326

 Score = 83.7 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 61/217 (28%), Gaps = 32/217 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G +   D   +   V    D      +   ++           PE   +TGI
Sbjct: 75  VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPPEVTRLTGI 134

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +     S  I          +I  +N  FD  +                  
Sbjct: 135 TDAMVEGQVIDIRSLSALIE------PADLIIAHNAGFDRPFCEA--------------- 173

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +    A++    +      G    KL  L    G  H   H A  D +A
Sbjct: 174 --------FSSLFTGKAWACSVAEIDWSARGFEGTKLGYLVGQAGYFHEG-HRAVDDCHA 224

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
            L ++   + +    F  LY    ++++R   +    
Sbjct: 225 LLEILDRQQGEGESPFAELYRASQRSRIRIFAEHSPF 261


>gi|296158207|ref|ZP_06841039.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295891543|gb|EFG71329.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 244

 Score = 83.7 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 57/205 (27%), Gaps = 27/205 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   LILDTETTGLNARTGDRILELGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E + +   F    +  I   +N  FD  +    F              
Sbjct: 61  TEFLSDKPK-FGEIADQFRDFIQGADLII---HNAPFDIGFLDVEFALLGLPPVS---TY 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 114 CGEIIDTLARAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207
               +   +   +  L   +    +
Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGESH 184


>gi|91784549|ref|YP_559755.1| DNA polymerase III subunit epsilon [Burkholderia xenovorans LB400]
 gi|91688503|gb|ABE31703.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 244

 Score = 83.7 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 57/205 (27%), Gaps = 27/205 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +        +   F+  P  D   DP A+ + G+T
Sbjct: 4   LILDTETTGLNARTGDRILELGCVEL-VNRRLTGNNLHFYINPERDS--DPGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E + +   F    +  I   +N  FD  +    F              
Sbjct: 61  TEFLSDKPK-FGEIADQFRDFIQGADLII---HNAPFDIGFLDVEFALLGLPPVS---TY 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L   + ++                    L  L    GI   H   H A  D  
Sbjct: 114 CGEIIDTLARAKQMFPG--------------KRNSLDALCDRFGISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207
               +   +   +  L   +    +
Sbjct: 160 LLAEVYLAMTRGQESLVIDMLGESH 184


>gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
 gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
          Length = 405

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 54/202 (26%), Gaps = 29/202 (14%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              + I D ET G      DR  +   + V                P  D  P      I
Sbjct: 1   MTGYTIIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATL-VNPQRDVGP----THI 55

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +  L       E +  +           +  +N RFD  +    F R        
Sbjct: 56  HGITARDVLDAP-TFQEVAPYL---IGSLAGRTLVAHNARFDTQFLDYEFERA------- 104

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      L  M+             S      S KL+D  +A  + H + H A  D
Sbjct: 105 -SVGTRPPTPSLCTMQ-----------LSSSYLRGASRKLKDCCVAANVPHADEHTALGD 152

Query: 181 VYATLALVWLIREKKPKLFEYL 202
             A   L+        +   + 
Sbjct: 153 ARAVAGLLNYYLVNTDRPVPWS 174


>gi|311746871|ref|ZP_07720656.1| exonuclease [Algoriphagus sp. PR1]
 gi|126578557|gb|EAZ82721.1| exonuclease [Algoriphagus sp. PR1]
          Length = 267

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 71/196 (36%), Gaps = 27/196 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N    +D E  G +++ DR  + + V+     +     E++  +         EA  I
Sbjct: 5   LKNSIAFFDLEATGTNISTDRIVEISIVK----LKIDGGQEIYTRRVNPGVPIPLEASLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G+  +    +     + ++ ++QF     + + G+N +++D       F R   +    
Sbjct: 61  HGLYDKDLKDEP-SFKDIAKEVYQFI--GGSDLSGFNVLKYDIPLLVEEFLRAGIE---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D  +++ A   F         + +   ++K        G    NAH A+AD
Sbjct: 114 ------FELDKRNLLDAQKIF-----HMMEKRNLTAAYKF-----YCGKTLENAHSAEAD 157

Query: 181 VYATLALVWLIREKKP 196
             AT+ +     E+  
Sbjct: 158 TLATMDVFISQVERYN 173


>gi|148549845|ref|YP_001269947.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
 gi|148513903|gb|ABQ80763.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
          Length = 211

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 49/200 (24%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +      +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPGTGCRATEVAVVML-EGGRIVERYQSLM---NAGVPVPAFVAGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT            +    + +F        +  +N  FD  +      R        
Sbjct: 57  TGITTAMLRSAP-PVDKVMNEVAEFV---GGTPLLAHNAAFDQKFWDYELSRIGRS---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                               F+   +        A + KL  L    G  +   AH A A
Sbjct: 109 ----------------RSQPFACSLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L+  +     +  
Sbjct: 153 DAEMAANLLQHLAGVLRQDH 172


>gi|260596631|ref|YP_003209202.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
 gi|260215808|emb|CBA28259.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
          Length = 243

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHRIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFMV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +  +   V    F   +  F        +  +N  FD  +    F        + 
Sbjct: 66  HGISDEFLMNKPV----FGDVVEDFLDYIRGAELVIHNASFDIGFMDYEFGMLKRGLPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILADVYLAMTGGQTSI 185


>gi|251788641|ref|YP_003003362.1| DNA polymerase III subunit epsilon [Dickeya zeae Ech1591]
 gi|247537262|gb|ACT05883.1| DNA polymerase III, epsilon subunit [Dickeya zeae Ech1591]
          Length = 244

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 30/224 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  I
Sbjct: 9   IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-VNRRLTGRH--FHVYLRPDRLVDPEAYNI 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +  +      A+ +     F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGISDEFLVDKP-TYADVADDFLDFIRGAE---LVIHNASFDIGFMDYEFRLLGRDIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCTITDSLLMARRLFPG--------------KRNNLDALCDRYQIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
            D      +   +   +  L   +     +  ++     +   P
Sbjct: 166 LDAEILAEVYLAMTGGQTSLAFSMEGEGQQQAVQTETIQRISRP 209


>gi|217970689|ref|YP_002355923.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217508016|gb|ACK55027.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 239

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 55/200 (27%), Gaps = 33/200 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G D    DR  +   V      E ++ +     +          D EAV + 
Sbjct: 4   IVLDTETTGLDWRNGDRVIEIGCV------ELLDRSLTGRHYHVYINPGRGIDAEAVAVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +         A+       F        +  +N  FD  +      R         
Sbjct: 58  GITEEFLADKPK-FADIVADFEDFVRDAE---LVIHNASFDVGFLDAELERLGR------ 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179
                        + A+ A   D ++     +      L  L     I+  H   H A  
Sbjct: 108 -----------AKLGALCAGVVDTLKLAKEQNPGKKASLDALCDRYEIDNAHRELHGALL 156

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      +   +   +  L 
Sbjct: 157 DAELLAEVFLAMTRGQESLM 176


>gi|255542840|ref|XP_002512483.1| exonuclease, putative [Ricinus communis]
 gi|223548444|gb|EEF49935.1| exonuclease, putative [Ricinus communis]
          Length = 334

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 29/210 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G     +R  + A    D    +  + +          +       I GI
Sbjct: 133 TVIVFDLETTGFSREYERIIEIALQ--DLHGGENSTFQTL---INPGRIVP--NSHIHGI 185

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117
           T     +  V    +    + Q+      P   +  + +N   FD  +  N F R+  D 
Sbjct: 186 TTHMVCKPHVPRMEDLIPILLQYIRSRQKPGGYVLLVAHNGRSFDVPFLINEFKRSGVDV 245

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176
                       D L + R          +W        S  LQ L  A GI+   +AH 
Sbjct: 246 PC-----NWLFMDTLPLAR----------KWMKSKGLKISSSLQGLREAFGIKLEGSAHR 290

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYR 206
           A +DV     L  ++          L    
Sbjct: 291 AMSDVRLLAKLFQMLTFNLKTTLPSLVAES 320


>gi|305667231|ref|YP_003863518.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88708165|gb|EAR00403.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 454

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D   + ++           +    P  V +TGI 
Sbjct: 2   YTILDIETTGGKYNEEGITEIAIHKFDGH-QVVDKFISL---VNPEKDIQPFVVNLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++RI +        ++  +N +FD    R  F R  Y+        
Sbjct: 58  NKMLRTAPKFH-EVAKRIVEITEDS---VLVAHNAQFDYRILRTEFRRLGYNF------- 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                         A S+ L  L  + GI   + H A  D  AT
Sbjct: 107 -------------ERKTLCTVDLSKYLLPDAESYSLGKLVRSLGIPMSDRHRANGDAIAT 153

Query: 185 LALVWLIREKKPK 197
           L L  L+  K  +
Sbjct: 154 LKLFKLLLAKDSE 166


>gi|255534839|ref|YP_003095210.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10]
 gi|255341035|gb|ACU07148.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10]
          Length = 254

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 69/221 (31%), Gaps = 27/221 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
               I+D ET G +VA DR  + + ++V+       S E        +     E+  I G
Sbjct: 7   KPLCIFDLETTGVNVAKDRIVEISILKVNPDG----SRESKTWLVNPEMYIPKESTEIHG 62

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+            E + ++ +  +   T + G+N+ RFD         R   D     +
Sbjct: 63  ISDDDVKNSPK-FKEIAPKVMEMIT--GTDLGGFNSNRFDVPLLAEELLRAGIDFDLTKF 119

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D+  +                                   E VNAH A+ADV 
Sbjct: 120 KL----VDVQTIYH----------------KMEPRNLSAAYNFYCKKELVNAHSAEADVL 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
           AT  ++        +L   +      +   K  D+  M   
Sbjct: 160 ATFEVLDAQVAHYNELPNDIAGLSEFSHHHKFADLAGMIRF 200


>gi|167627857|ref|YP_001678357.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597858|gb|ABZ87856.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 230

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 68/241 (28%), Gaps = 24/241 (9%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G D    +R  +F  V V    +   +   F+C P   Y  +  A+ + G+T
Sbjct: 5   VFIDTETTGFDYKIGNRIIEFGAVEV-IDRKVTGNNLHFYCNPN--YEVEAGALAVHGLT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + E E   ++  F       I   +N  FD  +          + Y     +
Sbjct: 62  NEFLADKPLFE-ENVDQMIDFLRGAEIII---HNAAFDVPFINWELGLLKNNKYGTLEQH 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D L++ R  +    +               L  L        +H   H A  D  
Sbjct: 118 VAKIVDSLELARKKHPLQKN--------------NLDALCKRYHIRNDHRTFHGALLDSE 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
               +   +   +  L        +K+ +    D   +                   I  
Sbjct: 164 LLADVYLAMTGGQTNLVLQTTKNASKDTIDIDFDKLKLRSANETIINISEHDKYLCNILK 223

Query: 243 V 243
           +
Sbjct: 224 L 224


>gi|46402125|ref|YP_006619.1| Gp39 [Klebsiella phage phiKO2]
 gi|40218269|gb|AAR83055.1| Gp39 [Klebsiella phage phiKO2]
          Length = 202

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 55/186 (29%), Gaps = 11/186 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           VI D ET G  +  D   +   +  + + E +                 PEA  I  IT 
Sbjct: 22  VIIDTETTGL-MDFDEIIEITII--NMRGEIL-----LNSLVKPSRPIPPEATKINHITN 73

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         ++    + +         + +N+        ++     F+D  +      
Sbjct: 74  EMVADAP-TWSDVFPAVLKII--WKYKWLAWNSSFDARLMVQSCLKTWFFDDLKPHRITS 130

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                    + A   +     ++  +        L   A  +G+    AH A AD    L
Sbjct: 131 IIMAIETRHIDAKAVYDQWYGEFDEKRKNFKRQSLATAAARHGVSTAGAHRALADCLMIL 190

Query: 186 ALVWLI 191
            ++  I
Sbjct: 191 GVLNQI 196


>gi|325271798|ref|ZP_08138267.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
 gi|324103069|gb|EGC00447.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
          Length = 201

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 52/200 (26%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    A  R  + A V +      +E  +                  +
Sbjct: 1   MERIAVIDFETTGISPGAGCRATEVAVVML-EGGRIVERYQSLM---NAGVPVPAFVAGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT            +    + +F        +  +N  FD  +      R        
Sbjct: 57  TGITTAMLRSAP-PVDKVMNEVAEFV---GETPLLAHNAAFDQKFWDYELARIGRS---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                              +F+   +        A + KL  L    G  +  NAH A A
Sbjct: 109 ----------------RSQSFACSLLLSRRLLPAAPNHKLGTLTRWAGLPDTGNAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L+  +     +  
Sbjct: 153 DAEMAANLMQHLAGVLREQH 172


>gi|224825206|ref|ZP_03698312.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224602877|gb|EEG09054.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 212

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 47/195 (24%), Gaps = 30/195 (15%)

Query: 7   IYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + D+ET G       R  + A V +          +             P+   +TGI+ 
Sbjct: 15  VIDFETTGLSPGIGCRATEIAVVLL-ENGRVAGRFQSLM---NAGVRVPPDIERLTGISN 70

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                    +A   R   +F        +  +N  FD  +                    
Sbjct: 71  AMLKAAPPADA-VMREAAEFV---GDTPLVAHNAAFDRKFWDYEL----------GQFGR 116

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYAT 184
             R D    +       P               KL  L    G+     AH A AD    
Sbjct: 117 TRRQDFACTLLLARRLLPAAPN----------HKLGTLTRWAGLPATGQAHRALADAEMA 166

Query: 185 LALVWLIREKKPKLF 199
             L+  +        
Sbjct: 167 ANLMAHLTRVLRVQH 181


>gi|269958788|ref|YP_003328576.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str.
           Israel]
 gi|269848618|gb|ACZ49262.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str.
           Israel]
          Length = 232

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 50/186 (26%), Gaps = 30/186 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D A  DR  +   V +   +         +  P  D      A  I GIT
Sbjct: 6   IVLDTETTGLDAASGDRIIEIGCVEL-VDFVMTGQVFHKYINPERDIPI--AATKIHGIT 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE + +   F       ++  +N  FD  +      R            
Sbjct: 63  TDMVKNMPK-FAEMADQFLNFVQDS---VLVIHNAGFDLKFIETEMERIGKTKLYN---- 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L+V R  +   P                L  L     I   +   H A  D  
Sbjct: 115 --PVVDTLEVARRKFPGMPA--------------SLDALCKRFDISTSSRRFHGALKDAT 158

Query: 183 ATLALV 188
               + 
Sbjct: 159 LLARVY 164


>gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1010

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 62/222 (27%), Gaps = 29/222 (13%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70
           ET G     D+  +   V+V    E  E           + +   + V +TGIT +  + 
Sbjct: 2   ETTGLYKYSDKITEIGAVKV-ENGEITEVFNEL---VNPEKMIPEKVVELTGITNEMVMD 57

Query: 71  DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130
              ++ E   +  +F    +   +G N      +                S+       D
Sbjct: 58  KPKID-EILPKFLEF--SKDAYFVGQNTDFDIGFVKEA--------CDNLSYQFEPIYLD 106

Query: 131 LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWL 190
            L + RA++                  F L  LA    +   N H A  D   T  +   
Sbjct: 107 TLPMARAVF-------------PSMGRFSLDKLAKKLAVGPFNHHRASDDAMTTAKVFIK 153

Query: 191 IREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA 232
           + EK     +        N ++    I        +      
Sbjct: 154 LFEKIKDKNKD-LSLSKINSIKTKWPISRHENFSSIIFAKNY 194


>gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group]
          Length = 901

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 64/210 (30%), Gaps = 28/210 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G     +R  +FA VR D                  +     +  ++ GI
Sbjct: 700 TILVFDIETTGFSRRYERIIEFA-VR-DLMG---GKNSTIQTLINPEREI--KNAYVHGI 752

Query: 64  TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           +     +  +    EF   + Q+      +      + +N   FD  +    F R+  + 
Sbjct: 753 SSSMVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEM 812

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
                       D L + R +           S  +   S  L +L     I    +AH 
Sbjct: 813 -----PGDWLFVDTLPIARQL---------IGSDGEKLKSVSLDNLREHYKIPLAGSAHR 858

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYR 206
           A  DV     ++  +  +       L +  
Sbjct: 859 AMQDVITLCYVLQKLTFELKLTVPQLLERS 888


>gi|184200503|ref|YP_001854710.1| DNA polymerase III subunit epsilon [Kocuria rhizophila DC2201]
 gi|183580733|dbj|BAG29204.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
          Length = 232

 Score = 83.3 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 22/183 (12%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET GRD    R    + V V    + ++  E              EA  + G++  +
Sbjct: 15  FDLETTGRDPQQARIVTASVVLVSPAGDVLQEWEWLA---DPGVEIPEEAAAVHGVSTDR 71

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G   AE +  + +  +        +   N  +D         R+   +        
Sbjct: 72  ARAEGRPVAEVAAELSEVLAGFWREGVPVLAFNAAYDLTVLTRETERHGLPAPE-----P 126

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D   + + ++ +                  L  L    G+    AH +  D  AT 
Sbjct: 127 FPVLDPFVLNKQVHRYR------------RGKRTLGALCEEYGVVLDAAHTSAEDALATE 174

Query: 186 ALV 188
            L 
Sbjct: 175 RLA 177


>gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53]
 gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53]
          Length = 1451

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 64/480 (13%), Positives = 143/480 (29%), Gaps = 47/480 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET           +FA   +      ++  ++F                +T IT
Sbjct: 411 YVVFDIETTSLSAYHGEIIEFAATII-ENKAVVDKVDIF---IKSKEKLSHFTTRLTSIT 466

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   + G+   E  ++I+   +     +   +N  FD  +    F +N   + + ++ +
Sbjct: 467 NEMLDQKGIELKEALQKIYDVLNNN---VAVAHNANFDYNFLIEKFDQNNMQAPKCTFID 523

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +L   R  +  +          D   + +            + A     D+   
Sbjct: 524 SLVVSRILFEHRDKHNLNEFCRNLSVNYDTEKAHRALYDTEVLADAWIEATLKLKDIKQI 583

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
                L   K   LF   +       ++    ++ +  LV ++       + T   AP  
Sbjct: 584 SNFQELSEYKSDALFSKYFSLYINTVVKNQAGLKELFQLVSIAN------TKTFYGAPKI 637

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
           +    K        S  ++        +L   L  S  +    V   I+++   + P   
Sbjct: 638 FWSTLKSFKNILVGSNGVQ-------GELFDILLLSSRQR---VEKYIQKLDYIEIP--- 684

Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLL-----RQQTNLRDRFKAIYNKPYTSSSQDVD-- 357
                   + +R  +   + LE+L +L     +    +    +  Y          V   
Sbjct: 685 -HPDLFDSYLDRNQLTKDQLLESLQILISLAKKHNKLIISTAEPRYRHKGDREIFKVLTS 743

Query: 358 -------SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
                    L++          +        +++        D+ L E        N  H
Sbjct: 744 FPIRDKRHFLWNYKAVKAGNYSVPNFYFLTTDEMLDAFSFLKDKSLIE----DIVVNNAH 799

Query: 411 TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL-QWVIP 469
            L+    ++  E  K  L    I+     L+ L  +    +  E L   + + + + +IP
Sbjct: 800 KLNNLIDENI-EVIKTDLYPPSIKNSSELLKDLVYKNAKKKYGEVLPKLVQDRIDKELIP 858


>gi|32035046|ref|ZP_00135112.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208748|ref|YP_001053973.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           L20]
 gi|126097540|gb|ABN74368.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 257

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 57/216 (26%), Gaps = 30/216 (13%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G   +          +   V V            F          D EA+ +
Sbjct: 10  VVLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVDEEAIKV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +      V  AE +    +F       I   +N  FD  +    F        + 
Sbjct: 67  HGITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLGNPPPKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 S  D L V R +Y                    L  L    GI++     H A 
Sbjct: 123 --AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
            D      +  ++   +  L            +  L
Sbjct: 167 LDAEILADVFLMMTGGQLALLGEEDATATHENVADL 202


>gi|254283824|ref|ZP_04958792.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B]
 gi|219680027|gb|EED36376.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B]
          Length = 244

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 26/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G +V    R  +   V +    +   +    + +P  +   DP A+ + GIT
Sbjct: 4   VVLDTETTGLEVTQGHRIIEIGCVEL-VNRKLTGNHYHQYVQPQRE--IDPGAMEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P             +     F       I   +N  FD  +      R            
Sbjct: 61  PDFLADKP-TFDRVADEFLAFIDGAELII---HNAPFDVGFIDAELDRL----------- 105

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
           G  R  + D  R   +      + P +        L  L    G+++     H A  D  
Sbjct: 106 GARRTAVADHCRVTDSLVLARRKHPGQ-----RNSLDALCQRYGVDNSTRTLHGALLDAE 160

Query: 183 ATLALVWLIREKKPK 197
               +  L+   +  
Sbjct: 161 ILADVFLLMTGGQTS 175


>gi|320322651|gb|EFW78744.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330564|gb|EFW86543.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 204

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 51/201 (25%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G       R  + A V +  Q   +E  +                  
Sbjct: 1   MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVELFQSLM---NAGVRIPAFIEG 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+          E      +  F        +  +N  FD  +      R       
Sbjct: 57  LTGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178
                           +   +F+   +       GA + KL  L     +     AH A 
Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152

Query: 179 ADVYATLALVWLIREKKPKLF 199
           AD      L   +  +     
Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173


>gi|325989695|ref|YP_004249394.1| DNA polymerase III polC-type [Mycoplasma suis KI3806]
 gi|323574780|emb|CBZ40440.1| DNA polymerase III, polC-type [Mycoplasma suis]
          Length = 1438

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 61/469 (13%), Positives = 125/469 (26%), Gaps = 48/469 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I+D ET G +   D   +   V        I+                 E + +T IT
Sbjct: 394 FSIFDLETTGLNPIFDEIIEI-FVLKYSSGTVIDHYYSLIRCNKKLRK---EIINLTHIT 449

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +K    G  +    + +  F S   T +I +N I FD  +  +   ++  +        
Sbjct: 450 EEKLNMSGRDKLTVLQEVRDFVS--GTVLIAHNGIDFDFPFLNSELRKSGLEPLDNP--- 504

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA--LANGIEHVNAHDAKADVY 182
                 +LD +R   A              + S+ L  +A  ++  +     H+++ D  
Sbjct: 505 ------ILDTLRLCKAL--------EEGKKSKSYSLFAIAKKMSINVVEQELHNSEYDTR 550

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS------- 235
               +     ++   L    Y Y     L    D   +      + +   +++       
Sbjct: 551 CLAKMWEFWSQQLIDLSLDPYTYDGLVNLNSSFDKDKLLRNYFGNNVIIFAKNQKGLKSL 610

Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
              +      H   K  +    +         L S   +  +    ++         ++ 
Sbjct: 611 YELVSIAHTEHFVDKPRLKWDAIETRRENLIVLSSPTNSALVNAVLNDEFDTFKKEGEKF 670

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
                P      +     F   G   +  L+           +               + 
Sbjct: 671 DYISLPPPSNFSHEISRGFFEDGEV-ETLLKTFYEWADNCQFKLIANYCLKYQDFKEVEQ 729

Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
               ++          +           L   +   +         R  A     +LSEK
Sbjct: 730 YKVLVHAKSIGGKRHYLYSSKHGNDV--LPDYSWRTT--------ERLIAEYDFLSLSEK 779

Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
           EK+D     +  L  S   +       L+          G +  + EY+
Sbjct: 780 EKEDLFFTYRYELANSVSPDIFVNKSELAI-----PKIPGALENIKEYI 823


>gi|271970236|ref|YP_003344432.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270513411|gb|ACZ91689.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 189

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 51/175 (29%), Gaps = 10/175 (5%)

Query: 8   YDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
            D ET G   A  DR  + A V +D     ++        P         AV + GIT  
Sbjct: 2   VDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSL-VDPRRGT----GAVHVHGITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V+E E    + Q  +     ++  +N+ FD  + + +   ++      +     
Sbjct: 57  MVEGAPVIE-EVLDEVWQRIA---GRVLVAHNVSFDLRFLKVLPGSHWLTEALCTQQLAP 112

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                                  +    A +    +L        ++ HD+    
Sbjct: 113 DLIPGGKWTLGACCQRAGIPFSNAHAALADARATAELFRFYLGRGLSWHDSLDRA 167


>gi|254490869|ref|ZP_05104052.1| exonuclease superfamily [Methylophaga thiooxidans DMS010]
 gi|224464041|gb|EEF80307.1| exonuclease superfamily [Methylophaga thiooxydans DMS010]
          Length = 240

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 18/196 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G D   +    F  V    +   I  ++  +     + +   E++    IT
Sbjct: 50  FVALDFETTGLDPRYNEIVSFGLVPFTLRG--IRPSDGHYQVVKPNCVLSEESIAFHRIT 107

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E    + + +     + CI+  +  + +         R F D        
Sbjct: 108 HSQVDTAPPLE----KVLDELLGRLSGCIVVVHYQQIE---------RPFLDLACRKLWG 154

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDD---GATSFKLQDLALANGIEHVNAHDAKADV 181
            +  + L+D M     +   G +   +        S +L D     G+   +AH AK D 
Sbjct: 155 EHCLFPLIDTMAIEARWQRSGWKHRLKKTLGLQPVSIRLDDSRRRYGLPSYSAHHAKVDA 214

Query: 182 YATLALVWLIREKKPK 197
            AT  L      +   
Sbjct: 215 MATAELFLAQVARHYS 230


>gi|110634574|ref|YP_674782.1| DNA polymerase III, epsilon subunit [Mesorhizobium sp. BNC1]
 gi|110285558|gb|ABG63617.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
          Length = 498

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 57/207 (27%), Gaps = 25/207 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G D    R  Q AGV + R   + +    F           P+++ I GIT 
Sbjct: 16  VAFDTETTGLDTRTARVVQVAGVAISRGAVRQDE--SFESLVHPGMSIPPDSIRIHGITD 73

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                       F+     F        +    + FD         R             
Sbjct: 74  GMLREAPA----FAAVWRSFEMFRGVRPLIGYAVGFDLAIIEREAARAGIR--------- 120

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
             R   L V       + D               L+ LA   G E +  H A  D  A  
Sbjct: 121 RKRPRTLCVRTLSRIVNRDL----------RGHSLEALAAWLGFEIIGRHQALDDAMAAA 170

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLR 212
            +   +  +   +    +    +  L+
Sbjct: 171 KVFTGLLPRLQAMGIRTFAEAERASLQ 197


>gi|256827805|ref|YP_003151764.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Cryptobacterium curtum DSM 15641]
 gi|256583948|gb|ACU95082.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Cryptobacterium curtum DSM 15641]
          Length = 1043

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 62/228 (27%), Gaps = 36/228 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              V+ D ET G     D   Q A  R+  + + ++    F            E   +T 
Sbjct: 35  KDIVVIDTETTGISFVRDELTQIAAARM-VEGKIVDWFVTF---VNPGRPIPEEISHLTS 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I           E      + Q         +  +N  FD ++              W  
Sbjct: 91  IYESDVADAPSPE----EAVFQLVDFVGESCLVAHNAAFDKHFCTKPATGESLTHNIW-- 144

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D LD+ R                    S +L DL  A        H A ADV 
Sbjct: 145 ------IDSLDLARIA-------------LPRLKSHRLLDLVRAFDAPLST-HRADADVE 184

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
           A  A+  ++      + + L D        +        P VHV   F
Sbjct: 185 ALCAVFRILLAAVDAMSQGLIDEIAAMATEEEW------PTVHVFKQF 226


>gi|218529738|ref|YP_002420554.1| DNA polymerase III subunit epsilon [Methylobacterium
           chloromethanicum CM4]
 gi|218522041|gb|ACK82626.1| DNA polymerase III, epsilon subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 236

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 26/186 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V        +++ E F             A  + GI+
Sbjct: 5   IVLDTETTGTEARNGDRLIEIGCV---ELINHVQTGETFHRLINPQRAVSEGAFAVHGIS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V    F+  +  F    +   +  +N  FD  +    F R            
Sbjct: 62  DAMLADKPV----FAEVVDAFLEFCSDARLVIHNAPFDVGFLNMEFARLG--PAAPKAIA 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  + +               L  L    G++      H A  D  
Sbjct: 116 LEDVVDTLLLARRKHPGAAN--------------NLDALCNRYGVDTTRRVKHGALLDAQ 161

Query: 183 ATLALV 188
               + 
Sbjct: 162 ILAEVY 167


>gi|328474397|gb|EGF45202.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 240

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 75/253 (29%), Gaps = 32/253 (12%)

Query: 3   NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           N  V+ D ET G +          R  +   V +    +       F      D    PE
Sbjct: 10  NRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDREIQPE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +  +       E++    +F        +  +N  FD  +    F +   D
Sbjct: 67  AIQVHGITDEFLVDKP----EYASIHQEFLDFIKGAELVAHNASFDTGFMDYEFEK--LD 120

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                 D+     D L + + I+                    L  L    GI+  H   
Sbjct: 121 PTIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNK-NQLRKLIDIQNMTPLVHVSGMFGAS 233
           H A  D      +  L+   +  L             +R++   + +  L   +    A 
Sbjct: 167 HGALLDAEILADVYLLMTGGQTSLEFNANKQEGGVETIRRIEGRKALKVLRATADELEAH 226

Query: 234 RSNTALIAPVAWH 246
           +    L+    WH
Sbjct: 227 QKRLELVNDCIWH 239


>gi|322417781|ref|YP_004197004.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
 gi|320124168|gb|ADW11728.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
          Length = 835

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 48/185 (25%), Gaps = 26/185 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +V++D ET G  ++  D+    + VR+ R   K+++ ++F            E+     I
Sbjct: 641 YVVFDTETTGLQISQGDKVVSISAVRIRRG--KVQNADIFHTLVNPGRHIPAESTAFHRI 698

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        E   +   F       ++  +N  FD                     
Sbjct: 699 EDHMVADAP-SMNEVYPQ---FVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLPLVENP-- 752

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                         G     L  +A   GI     H +  D  A
Sbjct: 753 -----------------ILDTLFLSVGLHSGTEGHSLDAMAQRMGIAIEGRHTSLGDARA 795

Query: 184 TLALV 188
           T  + 
Sbjct: 796 TAQIF 800


>gi|262194078|ref|YP_003265287.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262077425|gb|ACY13394.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 180

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 56/190 (29%), Gaps = 19/190 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V  D ET G D       + A +RV  Q    E   V   +P      DPEA+ + 
Sbjct: 1   MQPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVN 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G   +      V   +    +          ++  +N+ FD  +    +    +      
Sbjct: 61  GYRRRAWADA-VSLGDAMAELAPMLE---GAVLAGHNVAFDRRFLEAAWDCVGHRP---- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N     LD     +     G           S  L  +    G+     H A  DV
Sbjct: 113 ---ENLDHHALDTAALAFPLLMAG--------EIDSLSLTPVCAHLGVLRGEEHWAFDDV 161

Query: 182 YATLALVWLI 191
            A+L +   +
Sbjct: 162 RASLGVAQRL 171


>gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
          Length = 239

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 66/232 (28%), Gaps = 39/232 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           V+ D ET G D    DR  +   V      E I+       F      +      A  I 
Sbjct: 10  VVLDTETTGLDPDGGDRVIEIGCV------ELIDRVFTGKVFHEYINPERDIPYYATKIH 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT           +E + +  +F       I+  +N  FD  + +    R        S
Sbjct: 64  GITIDMLKDKPK-FSEIADKFLEFIDNG---ILVIHNAGFDIKFIKMELDR-----INKS 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
           +++     D L + R  +                 S  L  L     I   +   H A  
Sbjct: 115 YNSDFQVVDTLVLARKKFPG--------------VSSTLDALCRRFNISLQDRKFHGALL 160

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231
           D      L+  +  +     +   ++   N +    +I      + +     
Sbjct: 161 DA----TLLGKVYVQLMGGLQRSLEFSYNNNVSSASNIDKRCENLCIEPRIY 208


>gi|221633099|ref|YP_002522324.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM
           5159]
 gi|221156634|gb|ACM05761.1| DNA polymerase III epsilon subunit [Thermomicrobium roseum DSM
           5159]
          Length = 228

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 59/200 (29%), Gaps = 15/200 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D E  G D   D       VR+      +     F+           ++V + GI 
Sbjct: 33  YTVLDAEMTGLDPERDELLALGAVRMVGTRLLLG--ASFYQLIRPQRQGWGQSVTVHGIR 90

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P   +    +E    + + +F     + I+  + +  D  + +    R      R  W  
Sbjct: 91  PVDVVGAPPLE----QVLPEFVRFCASSILVGHGVEIDRKFLQRAAARCGLSWPRTYW-- 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +D  R     +      P        F L+DL  A  IE    H A AD + T
Sbjct: 145 -------VDTGRVARWLTSHHGALPEAAADRGRFSLEDLLAAYEIEPPARHHALADAFVT 197

Query: 185 LALVWLIREKKPKLFEYLYD 204
             +      +          
Sbjct: 198 ALVWQRQLTELATEGVRTLR 217


>gi|126010887|ref|YP_001039857.1| putative exonuclease [Vibrio phage VP882]
 gi|123203897|gb|ABM73410.1| putative exonuclease [Vibrio phage VP882]
          Length = 206

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 56/188 (29%), Gaps = 25/188 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N+ +I D ET G D +     + + +  D     +                  +A  I
Sbjct: 11  LANNALILDTETTGLD-SKAEIIEISII--DCAGNVL-----LDTLVKPTAPIPEDATRI 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          E               ++ YN   +D    R    RN       
Sbjct: 63  HGITNEMVANAP-TWPEVYDLFVPLVE--GRELVIYNA-DYDLRMIRQADERNDL----- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
              N  ++ D   +  A +       QW          +L + A   G +    AH A A
Sbjct: 114 --LNIRTQADCAMLAYAEF-----YGQWDDYRGQWKWQRLGNAAKQQGVVIEGKAHRALA 166

Query: 180 DVYATLAL 187
           D   TL +
Sbjct: 167 DCQMTLGV 174


>gi|238759160|ref|ZP_04620328.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236]
 gi|238702576|gb|EEP95125.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236]
          Length = 259

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 30/215 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 14  IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +    +F        +  +N  FD  +    F     D  + 
Sbjct: 71  HGISDEFLADKP-SFADITPEFLEFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 126

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 127 E--TFCTITDSLLLARRLFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 170

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            D      +   +   +  L   +   +++N   +
Sbjct: 171 LDAEILAEVYLAMTGGQTSLSFSMEGDQSQNDSSE 205


>gi|220913226|ref|YP_002488535.1| DNA polymerase III subunit epsilon [Arthrobacter chlorophenolicus
           A6]
 gi|219860104|gb|ACL40446.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 236

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 64/194 (32%), Gaps = 22/194 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET GR+    R    +   VD + E I   E              EA  + G+T ++
Sbjct: 12  FDLETTGRNSRAARIVTASVTVVDHRGEVIREHEWLA---DPGVEIPTEASDVHGVTTEQ 68

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A +DG    E +R +             +   N  +D         R             
Sbjct: 69  ARKDGRPAHEVTRELAAVLQELFDTGVPVIAFNASYDFTVLAAESARYGVPQL------- 121

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            +R+ +LD         P  +             L  L    G+   NAH + AD  ATL
Sbjct: 122 -TRFPVLD---------PYIMNKQVDRYRKGKRTLTALCEEYGVVLDNAHTSAADALATL 171

Query: 186 ALVWLIREKKPKLF 199
            ++  +  K PKL 
Sbjct: 172 KVLDAMAGKFPKLM 185


>gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1010

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/380 (13%), Positives = 106/380 (27%), Gaps = 32/380 (8%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70
           ET G     D+  +   V+V    E  E           + +   + V +TGIT +  + 
Sbjct: 2   ETTGLYKYSDKITEIGAVKV-ENGEITEVFNEL---VNPEKMIPEKVVELTGITNEMVMD 57

Query: 71  DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130
              ++ E   +  +F            N  FD  + +             S+       D
Sbjct: 58  KPKID-EILPKFLEF---SKDAYFVGQNTDFDIGFIKEACDNL-------SYQFEPVYLD 106

Query: 131 LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV-W 189
            L + RA++                  F L  LA    +   N H A  D   T  +   
Sbjct: 107 TLPMARAVF-------------PSMGRFSLDKLAKKLAVGPFNHHRASDDAMTTAKVFIK 153

Query: 190 LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRY 249
           L  + K K  +      N  + +  I        +  +  +   ++   +I+        
Sbjct: 154 LFEKIKDKNKDLSLAKINSIKTKWPISRHENFSSIIFAKNYQGLKNLYKIISDSRMKYFN 213

Query: 250 KDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE--LKGLVPVPIKEVHLNKCPILMPID 307
            ++    +L    +    + S      LF +  +   +  +    +     +   L    
Sbjct: 214 LEAKTPFDLVRKNKEGLIIGSGGKDGLLFKAIRDDYSEEKIDKICEFFDFFQIEALGVFA 273

Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFAD 367
              +    R         + +  L +  + +        +        + + L+ G F  
Sbjct: 274 DDLENGSIRNKEQIIEINKKIIELGK-KHDKLVVATGSVRYMEKKDYVLRNILHKGQFFH 332

Query: 368 VDRQIMDRILRTAPEQLSTL 387
                    L+T  E L   
Sbjct: 333 YRENNPLYYLKTTNEMLDEF 352


>gi|319400807|gb|EFV89026.1| putative dnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis FRI909]
          Length = 902

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 30/232 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G  +  D   Q     V +  + I++          D    P    +T I
Sbjct: 5   TFAVVDLETTGNQLDYDEIIQIGITFVRQN-QVIDTYHS---MIRTDLEIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  ++      E +  I+Q       C+   +NI FD  + +  F +           
Sbjct: 61  EEEMLVQAPY-FNEVADDIYQLIKD---CVFVAHNISFDLNFIKKAFEKCNI------QF 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++             +        S++L  LA ++ I   NAH A  D   
Sbjct: 111 KPKRVMDTLEL-------------FKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATT 157

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
           T     L+ +   K  +   D + +          ++  ++        ++ 
Sbjct: 158 T---AKLMIKAFEKFEQLHLDTQKQLYYLSKNLKYDLYHILFEMVRNYQTKP 206


>gi|259909387|ref|YP_002649743.1| DNA polymerase III subunit epsilon [Erwinia pyrifoliae Ep1/96]
 gi|224965009|emb|CAX56539.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae Ep1/96]
 gi|283479460|emb|CAY75376.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae DSM 12163]
          Length = 252

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 60/212 (28%), Gaps = 30/212 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 10  IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHVYLKPDRLIDPEAFGV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L        F++    F +  N   +  +N  FD  +    F +      + 
Sbjct: 67  HGIADEFLLDKPT----FAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 123 E--TFCKITDSLAMARKLFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            D      +   +   +  L   +   R K Q
Sbjct: 167 LDSEILAEVFLTMTGGQTSLAFSMEGEREKQQ 198


>gi|90581658|ref|ZP_01237447.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
 gi|90437142|gb|EAS62344.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
          Length = 241

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
              +++D ET G +         R  +   V +    +       F      D   DPEA
Sbjct: 6   QRIIVFDTETTGMNMTGPHYEGHRIIEIGAVEI-INRKLTGK--TFHVYIKPDRPIDPEA 62

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + + GIT +  +      A+  +    F    +   +  +N  FD  +    F     D 
Sbjct: 63  IDVHGITDEFLIGKP-SYADIHQEFIDFI---DGAELVAHNASFDIGFMDYEFQLMGSDL 118

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAH 175
            +    +     D L++ + ++                    L  L    GI+  H   H
Sbjct: 119 KKTE--DICKVTDTLEMAKRLFPG--------------KRNNLDILCSRYGIDNSHRTLH 162

Query: 176 DAKADVYATLALVWLIREKKPK 197
            A  D      +  ++   +  
Sbjct: 163 GALLDAEILADVYLMMTGGQTS 184


>gi|77166266|ref|YP_344791.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC
           19707]
 gi|254435200|ref|ZP_05048707.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27]
 gi|76884580|gb|ABA59261.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC
           19707]
 gi|207088311|gb|EDZ65583.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27]
          Length = 243

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 26/193 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +     R  +  GV +     +      F C    +   D  A+ I G++
Sbjct: 4   IILDTETTGLEPKEGHRIIEIGGVELSC-RRRTGR--TFHCYLNPEREVDKGALKIHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E +     F        +  +N  FD  +  +        S       
Sbjct: 61  NEFLSDKPR-FIEIAEEFLAFIEGAE---LVIHNAPFDVGFLDHEL--CLLGSKWGKIST 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                D L + R  +    +               L  L    GI++   + H A  D  
Sbjct: 115 DCQVLDTLQLARQRHPGQKN--------------NLDALCKRYGIDNSRRDLHGALLDAE 160

Query: 183 ATLALVWLIREKK 195
               +   +   +
Sbjct: 161 ILAGVYLAMTGGQ 173


>gi|91216470|ref|ZP_01253436.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC
           700755]
 gi|91185264|gb|EAS71641.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC
           700755]
          Length = 454

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 57/193 (29%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D E+ G     +   + A  + D   E ++           +       V +TGI 
Sbjct: 2   YAILDIESTGGKYNEEGITEIAIYKFDGN-EIVDQFISL---INPERKIQSFVVGLTGIN 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   +      E ++RI +       C I  +N +FD    +  F R  Y         
Sbjct: 58  NEMLHQAPK-FYEIAKRIIEITE---GCTIVAHNAKFDYRMLKLEFDRLGY--------- 104

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                           S+ L  L    GI   + H A  D  AT
Sbjct: 105 -----------LYERKTLCTVKLSKKLLPDFESYSLGKLVKKLGIPITDRHRASGDALAT 153

Query: 185 LALVWLIREKKPK 197
           + L  L+ EK   
Sbjct: 154 VKLFKLLLEKDTD 166


>gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 336

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D + E  +     +     +  P P  V+I G+T
Sbjct: 22  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHW---YTTVNPERDPGP--VWIHGLT 75

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   E +       +     ++  +N  FD       + R   +        
Sbjct: 76  SEALEGAPLFH-EVAGEFAARLT---GRVLVAHNAVFDWSMIAREYARAGQEPPVRQ--- 128

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   + + +A+                  + KL+ LA   G+    AH A  D    
Sbjct: 129 ---RLCTIALSKALAL-------------PLPNHKLETLAAHFGVVQRRAHHALDDARVL 172

Query: 185 LALVW 189
                
Sbjct: 173 AEAFR 177


>gi|70730658|ref|YP_260399.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf-5]
 gi|68344957|gb|AAY92563.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens Pf-5]
          Length = 249

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 56/203 (27%), Gaps = 31/203 (15%)

Query: 1   MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPE 56
           M N  V+ D ET G  V    R  +   V      E I        F      D   D  
Sbjct: 1   MANRSVVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEG 54

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +  +      AE +     F       I   +N  FD  +  N F      
Sbjct: 55  AIGVHGITNEFLVGKPR-FAEVADEFFDFIQGAQLII---HNAAFDVGFINNEFALMGQH 110

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                     +  D L + R  +    +               L  L    G+++     
Sbjct: 111 ERADI-TQHCTILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGREL 155

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +   +   +  
Sbjct: 156 HGALLDSEILADVYLTMTGGQTS 178


>gi|326800451|ref|YP_004318270.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
 gi|326551215|gb|ADZ79600.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
          Length = 330

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/335 (11%), Positives = 96/335 (28%), Gaps = 27/335 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +      +D ET G +VA DR  + + ++      +    +V   +   +      +  +
Sbjct: 5   LKRPLAFFDLETTGVNVASDRIVEISILKAMPDGSE----QVKTMRINPEMPIPLSSSLL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G+  +          + ++ I  F    +T + GYN+ +FD       F R   +    
Sbjct: 61  HGVYDEDIKDAP-TFKQVAQEIADFLE--DTDLAGYNSNKFDIPVLMEEFLRAGIN---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                       D+    +    +      +     ++K             NAH A+AD
Sbjct: 114 -----------FDIENRKFVDVQNIFHQMEQRTLKAAYKF-----YCDRTLENAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V AT  ++    ++   +            ++  +D  +    ++    F          
Sbjct: 158 VRATYEVLLAQVQRYDGVEWEDKSGNKSIPVKNDVDALHRFTNLNRPVDFAGRIIYDENG 217

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
             V    ++K   +      +   +  +             +++             N  
Sbjct: 218 VEVFSFGKHKGKSVVEVFKIEPSYYSWMMQGDFPLYTKRCIEKIWTDFRNIQHNRGANVK 277

Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT 335
           P        + +     G       ++L   +++ 
Sbjct: 278 PSNASDVAIQPKTKPYGGNKPYSGNQHLDKAKEKK 312


>gi|242242736|ref|ZP_04797181.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis W23144]
 gi|242233872|gb|EES36184.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis W23144]
          Length = 902

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 30/232 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G  +  D   Q     V +  + I++          D    P    +T I
Sbjct: 5   TFAVVDLETTGNQLDYDEIIQIGITFVRQN-QVIDTYHS---MIRTDLEIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  ++      E +  I+Q       C+   +NI FD  + +  F +           
Sbjct: 61  EEEMLVQAPY-FNEVADDIYQLIKD---CVFVAHNISFDLNFIKKAFEKCNI------QF 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++             +        S++L  LA ++ I   NAH A  D   
Sbjct: 111 KPKRVMDTLEL-------------FKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATT 157

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
           T     L+ +   K  +   D + +          ++  ++        ++ 
Sbjct: 158 T---AKLMIKAFEKFEQLHLDTQKQLYYLSKNLKYDLYHILFEMVRNYQTKP 206


>gi|289207686|ref|YP_003459752.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. K90mix]
 gi|288943317|gb|ADC71016.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. K90mix]
          Length = 238

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 55/193 (28%), Gaps = 24/193 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +   R  +   + +D            +     D   D  A+ + GIT
Sbjct: 4   IVLDTETTGLEPSEGHRVIEIGCLELD-NRRPTGRKLHEY--LQPDREIDAGAIEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +           F+  + +F        +  +N  FD  +  +        +       
Sbjct: 61  NEFLADKPR----FADVVGEFIEFVRGAELIIHNAPFDVGFINHELRLLGEAAPVTELVE 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             +  D L + R ++  + +               L  L     I+      H A  D  
Sbjct: 117 VCTVLDSLVMARRMHPGTRN--------------SLDALCKRYEIDASGRTLHGALLDAE 162

Query: 183 ATLALVWLIREKK 195
               +   +   +
Sbjct: 163 LLADVYLAMTGGQ 175


>gi|116514018|ref|YP_812924.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093333|gb|ABJ58486.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 930

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 28/203 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             F + D ET G      DR  QF    V +  E +++                    +T
Sbjct: 8   ESFAVVDLETTGTRKEEGDRIIQFGCAIV-KDGEVVKTYSFMM---NPHRKIPLAVTNLT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI  +           ++ +I +        +   +N+ FD  +         +++    
Sbjct: 64  GIDQKMVADQ-ADFKHYAPKIREILQD---TVFVAHNVNFDFPFLNYELTNAGFEAL--- 116

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +  +                 S+KL+DL  +  I+H N H A +D 
Sbjct: 117 ---TCKAVDTVELAKIAF-------------PTLPSYKLRDLTASLEIKHANPHKADSDA 160

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
           Y T  L+  I +K   L +   +
Sbjct: 161 YGTAVLLLKIIDKLASLPQATLN 183


>gi|157375130|ref|YP_001473730.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157317504|gb|ABV36602.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 242

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           VI D ET G +          R  +   V V             +       + D EA+ 
Sbjct: 11  VILDTETTGMNQGAGAIYLGHRIIEIGCVEV-INRRLTGRHYHEY--INPQQIIDEEAIE 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +         AE S+    F    +   +  +N  FD  +  + F  +      
Sbjct: 68  VHGITNEYVANKPK-FAEISQSFIDFI---DGAEVVAHNASFDVNFMDHEF--SLLQPRG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
               +     D LD+ + ++    +               L  L    GI++     H A
Sbjct: 122 PKTADICQILDTLDIAKFLHPGQKN--------------NLDALCKRYGIDNSRRELHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  ++   + K 
Sbjct: 168 LLDAEILADVYLMMTGGQTKF 188


>gi|298293766|ref|YP_003695705.1| DNA polymerase III subunit epsilon [Starkeya novella DSM 506]
 gi|296930277|gb|ADH91086.1| DNA polymerase III, epsilon subunit [Starkeya novella DSM 506]
          Length = 232

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V +   + +I + + F      +     EA  + G++
Sbjct: 4   IVLDTETTGLNPLTGDRLVEIGCVEI---FNRIPTGQTFHVYLNPERDMPLEAFNVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F+  +  F +      +  +N  FD  +      R    +  +    
Sbjct: 61  AEFLSDKPL----FAAVVDDFLAFIAGDPLVIHNAAFDIGFINAELARLARPALTF---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +  +              S +L DL    GI+      H A  D  
Sbjct: 113 -DRVVDTLSLARRRHPGA--------------SNRLDDLMNRYGIDGSRRTKHGALLDSE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLADVY 163


>gi|292487330|ref|YP_003530202.1| DNA polymerase III subunit epsilon [Erwinia amylovora CFBP1430]
 gi|292898576|ref|YP_003537945.1| DNA polymerase III subunit epsilon [Erwinia amylovora ATCC 49946]
 gi|291198424|emb|CBJ45532.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC 49946]
 gi|291552749|emb|CBA19794.1| DNA polymerase III epsilon subunit [Erwinia amylovora CFBP1430]
 gi|312171436|emb|CBX79694.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC
           BAA-2158]
          Length = 249

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 62/218 (28%), Gaps = 30/218 (13%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 10  IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHVYLKPDRLIDPEAFGV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L        F++    F +  N   +  +N  FD  +    F +      + 
Sbjct: 67  HGIADEFLLDKPT----FAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 123 E--TFCKITDSLAMARKLFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
            D      +   +   +  L   +   R K Q  + I 
Sbjct: 167 LDSEILAEVFLTMTGGQTSLAFSMEGEREKQQDGETIQ 204


>gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 1482

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 38/230 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G    LD   +F  +  + +  + +  ++                 +T IT 
Sbjct: 436 VFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDIL---IKPKTKLKAFTQKLTNITE 492

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +       +E +  ++I++        I+  +N  FD  +      +  Y     +    
Sbjct: 493 KMLEDKPSIE-QAFKQINEIIKD---AILVAHNANFDFTFLSYWSEKLGYSKLENT---- 544

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183
               D L + R IY                 S +L  LA    I +    AH    D   
Sbjct: 545 --IIDTLTISRIIY-------------PDLKSHRLGSLAKRVNISYDPSIAHRGDYDADI 589

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
              +   + +          + R K ++    D   + P+ +   +    
Sbjct: 590 LADIYERMLD----------ETRKKIKIITDSDWNKIDPINYADNLNYYK 629


>gi|332993503|gb|AEF03558.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
          Length = 238

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 60/196 (30%), Gaps = 27/196 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G D     R  +   V  V+R+     +   F          + EA+ + GI
Sbjct: 4   IVLDTETTGIDPKEGHRVIEIGCVELVNRKL----TGNHFHVYINPGRQIEQEAIDVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          + +     F        +  +N  FD  +  + F          +  
Sbjct: 60  TNEFLTDKP-TFRDVAEDFVNFIR---GAQLVIHNAPFDVGFMDHEFGMEPKTRGVIT-K 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
           +  S  D L V R ++    +               L  L    GI+  H   H A  D 
Sbjct: 115 DICSVLDTLAVARKMHPGQKN--------------NLDALCKRYGIDNSHRELHGALLDA 160

Query: 182 YATLALVWLIREKKPK 197
                +  L+   + K
Sbjct: 161 EILADVYLLMTGGQTK 176


>gi|167999243|ref|XP_001752327.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696722|gb|EDQ83060.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1960

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 53/214 (24%), Gaps = 23/214 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              +++D ET G      +  + A    D                         +  +  
Sbjct: 249 PTIIVFDIETTGFLKPGSKIVELAC--RDIAG---GDCSTLETLVNPYQPVPIASTAVHK 303

Query: 63  ITPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           IT +   RD +    E       F         +  ++ +N  RFD  +     Y    +
Sbjct: 304 ITSEMVNRDDIPSWTEVMTAFVDFVESRRIGNSDVILVAHNGRRFDVPFIMKECYECSME 363

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                +       DL   M                      +KL  L         +AH 
Sbjct: 364 IPSHWYFIDT--IDLAKAMLKKRFGKTKLYNLQFLYYD--CYKLPRL--------EDAHR 411

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
           A  DV    ++   +  +       L D   K  
Sbjct: 412 AGVDVDMLASVFGKLLMELEMPVSELLDQAFKAS 445


>gi|149277808|ref|ZP_01883948.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
 gi|149231496|gb|EDM36875.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
          Length = 456

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 29/209 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G   + +   + + + V      +++ E                  +TGI+
Sbjct: 3   YAVVDIETTGGHASGNGITEIS-ILVHNGHSIVQNYETL---INPGQYIPAHIEALTGIS 58

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          + +  ++Q        I   +N+ FD  + R+      Y+        
Sbjct: 59  NEMVETAP-SFNQVAAEVYQLLHDK---IFVAHNVNFDFSFIRHQLGVCGYELSCRK--- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L  L  A  I   N H A  D  AT
Sbjct: 112 -------LCTVRMSRKI----------IPGHRSYSLGKLCAALNISLNNRHRAGGDAAAT 154

Query: 185 LALVWLIREKKPK-LFEYLYDYRNKNQLR 212
             L+ L+ +K  + + +      +K Q  
Sbjct: 155 AELLTLLLDKDSEGIIQQSLKVSSKEQAL 183


>gi|71734762|ref|YP_276473.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555315|gb|AAZ34526.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 204

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 51/201 (25%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G       R  + A V +  Q   +E  +                  
Sbjct: 1   MLERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVELFQSLM---NAGVRIPAFIEG 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+          E      +  F        +  +N  FD  +      R       
Sbjct: 57  LTGISNNMIRTAPSAER-VMGDVADFV---GATPLVAHNASFDQKFWDYELSRIQR---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178
                           +   +F+   +       GA + KL  L     +     AH A 
Sbjct: 109 ----------------KLEQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAM 152

Query: 179 ADVYATLALVWLIREKKPKLF 199
           AD      L   +  +     
Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173


>gi|310766705|gb|ADP11655.1| DNA polymerase III subunit epsilon [Erwinia sp. Ejp617]
          Length = 252

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 62/218 (28%), Gaps = 30/218 (13%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 10  IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHVYLKPDRLIDPEAFGV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L        F++    F +  N   +  +N  FD  +    F +      + 
Sbjct: 67  HGIADEFLLDKPT----FAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 123 E--TFCKITDSLAMARKLFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
            D      +   +   +  L   +   R K Q  + I 
Sbjct: 167 LDSEILAEVFLTMTGGQTSLAFSMEGEREKQQDGETIH 204


>gi|307246199|ref|ZP_07528280.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255179|ref|ZP_07536997.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259617|ref|ZP_07541341.1| hypothetical protein appser11_14150 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852808|gb|EFM85032.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862052|gb|EFM94028.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866262|gb|EFM98126.1| hypothetical protein appser11_14150 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 257

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 58/216 (26%), Gaps = 30/216 (13%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G   +          +   V V            F          + EA+ +
Sbjct: 10  VVLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +      V  AE +    +F       I   +N  FD  +    F        + 
Sbjct: 67  HGITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 S  D L V R +Y                    L  L    GI++     H A 
Sbjct: 123 --AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
            D      +  ++   +  L        N   +  L
Sbjct: 167 LDAEILADVFLMMTGGQLALLGEEDATSNHENVADL 202


>gi|220921281|ref|YP_002496582.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS
           2060]
 gi|219945887|gb|ACL56279.1| DNA polymerase III, epsilon subunit [Methylobacterium nodulans ORS
           2060]
          Length = 238

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 64/238 (26%), Gaps = 25/238 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G D   DR  +  G+        I +   F             A  + G++ 
Sbjct: 5   IVLDTETTGTDAKTDRLIEIGGI---ELLNHIPTGREFHRYINPQRAVSQGAFAVHGLSD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  +    F+  +  F           +N  FD  +    + R             
Sbjct: 62  AFLADKPL----FAEILPDFLDFCGDATFVIHNAAFDVGFLNAEYARLG--ETAPPPIEL 115

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183
           ++  D L + R  +                 +  L  L    GI++     H A  D   
Sbjct: 116 SAVVDTLALARRKHP--------------NAANNLDALCARYGIDNSRRTKHGALLDAQI 161

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
              +   +   K        +  +  ++ +        P    S +  A R+  A   
Sbjct: 162 LAEVYIELLGGKQTSLGLTLEAASIVRVTQEAGPVAHGPRSVRSRLTDAERTAHAAFT 219


>gi|238799153|ref|ZP_04642606.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
 gi|238716994|gb|EEQ08857.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
          Length = 259

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 57/204 (27%), Gaps = 30/204 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 14  IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         AE +    +F       I   +N  FD  +    F     D  + 
Sbjct: 71  HGISDEFLADKP-TFAEITPEFLEFIRGAELII---HNAAFDIGFMDYEFRMLQQDIPKT 126

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 127 E--TFCTITDSLLMARRLFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 170

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
            D      +   +   +  L   +
Sbjct: 171 LDAEILAEVYLAMTGGQTSLSFSM 194


>gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri
           LC str. 95010]
 gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 1482

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 38/230 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G    LD   +F  +  + +  + +  ++                 +T IT 
Sbjct: 436 VFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDIL---IKPKTKLKAFTQKLTNITE 492

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +       +E +  ++I++        I+  +N  FD  +      +  Y     +    
Sbjct: 493 KMLEDKPSIE-QAFKQINEIIKD---AILVAHNANFDFTFLSYWSEKLGYGKLENT---- 544

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183
               D L + R IY                 S +L  LA    I +    AH    D   
Sbjct: 545 --IIDTLTISRIIY-------------PDLKSHRLGSLAKRVNISYDPSIAHRGDYDADI 589

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
              +   + +          + R K ++    D   + P+ +   +    
Sbjct: 590 LADIYERMLD----------ETRKKIKIITDSDWNKIDPINYTDNLNYYK 629


>gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 456

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 59/186 (31%), Gaps = 28/186 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITG 62
           HFV  D ET   +       Q   VRV    +    +  + C+P       D   + I G
Sbjct: 112 HFVGVDVET--ANADWGSICQIGVVRVTDGMQV--DSHEWLCQPPAGIDHFDEGNIRIHG 167

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITP           +F+    +  +     ++  +N +FD        +        W  
Sbjct: 168 ITPDMVTDAP----DFATVFPEVVAYVADQVLVAHNAQFDLTAFSRACHATGTPVPHWK- 222

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                             F+       +   G TS +L  +A   G+E  N HDA AD  
Sbjct: 223 ------------------FACSLAASRAAKLGITSHRLPVVAQHLGVELDNHHDAVADAR 264

Query: 183 ATLALV 188
           A   + 
Sbjct: 265 ACAGIF 270


>gi|240168250|ref|ZP_04746909.1| hypothetical protein MkanA1_02987 [Mycobacterium kansasii ATCC
           12478]
          Length = 680

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 37/210 (17%)

Query: 4   HFVIYDYETFGRDVAL---------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
            FV+ D E                 D   +   V+V R    +                 
Sbjct: 56  TFVVVDLE---TTGGRTTGTEAAPPDAITEIGAVKV-RGGTVLAEFATL---VDPQRSIP 108

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P+ V +TGIT        V+ A     +  FF      +   +N  FD  + R    +  
Sbjct: 109 PQIVQLTGITTAMVRDAPVISA----VLPMFFEFAGNSVFVAHNAGFDIGFLRAAARQCD 164

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                        R  +L  +R                + A S +L +LA    +     
Sbjct: 165 I---------TWPRPKVLCTVRLARRVL--------SREEAPSVRLAELARLFSVATQPT 207

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYD 204
           H A  D  AT+ ++  + E+      + + 
Sbjct: 208 HRALDDARATVDVLHALIERVGNQGVHTFA 237


>gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC
           700755]
 gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC
           700755]
          Length = 1452

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 68/217 (31%), Gaps = 30/217 (13%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D     +   + +  +P    +P 
Sbjct: 2   YIIFDTETTGLPKRWNAPITDTDNWPRAIQIAWQVHDEWGNLV-KAKDYLIRPEGFDIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+   AL+ G          ++  S      +   N+ FD       F+R  
Sbjct: 61  -DAERIHGISTALALQKGESLDMVLAEFNEALSESK--FVVGQNVGFDVNVMGAEFHRAQ 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            +          S    + V+      +    Q P    G   FKL  L        G  
Sbjct: 118 LE----------SLMASMPVLDTCTEKTAKLCQIPGGRGGK--FKLPTLTELHQYLFGQP 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
              AH+A ADV AT      +          L   R+
Sbjct: 166 FNEAHNATADVEATTRCFLELIRTGNYTENELQAERS 202


>gi|114563375|ref|YP_750888.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114334668|gb|ABI72050.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 242

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           VI D ET G +          R  +   V V            +          D EA+ 
Sbjct: 11  VILDTETTGMNQAGGPIYVGHRIIEIGCVEV-INRRLTGR--TYHQYINPGQAIDEEAIQ 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT  +   +     + ++    F    +   I  +N  FD  +  + F +   +   
Sbjct: 68  VHGITNDRVANEPRFH-QIAKDFIDFI---DGAEIVAHNANFDVSFMDHEFSK--LNPIG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
               +  S  D L + + ++    +               L  L    GI++     H A
Sbjct: 122 PKTKDICSILDSLAIAKRLHPGQKN--------------NLDALCRRYGIDNGRRTYHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  ++   + K 
Sbjct: 168 LLDAEILADVYLIMTGGQIKF 188


>gi|116491119|ref|YP_810663.1| Rad3-related DNA helicase [Oenococcus oeni PSU-1]
 gi|118586913|ref|ZP_01544346.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
 gi|290890627|ref|ZP_06553698.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
 gi|116091844|gb|ABJ56998.1| 3'-5' exonuclease domain and Rad3-related DNA helicase [Oenococcus
           oeni PSU-1]
 gi|118432640|gb|EAV39373.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
 gi|290479755|gb|EFD88408.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
          Length = 489

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/385 (15%), Positives = 113/385 (29%), Gaps = 34/385 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F I D ET           Q   +   + W+ I + +              + V +TGI
Sbjct: 6   TFSIVDLETTAPFKEGGHIIQIG-ISFVKNWKIINNFQT---MVNPGVKIPEQIVDLTGI 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +        E + +R IH   S     +   +N+R+D  Y    F R           
Sbjct: 62  KNEDVENAPYFE-DLARMIHDQLS---GTVFVAHNVRYDFPYLNGEFARIKMR------- 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R + +D ++      P             S+KL +L    GI     H A  D  A
Sbjct: 111 --RLRLEYVDTVQLAQIVFPTMN----------SYKLDELVSKLGINLPRHHRADQDASA 158

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L   I E   +  +   +    +    L + + +  L      F   R     IA +
Sbjct: 159 TAQLFLKIHEHLQEFPQNTLNNLINHSKSLLGNTETIFQLSKGKRTFPGDRYGPFDIARL 218

Query: 244 -----AWHPRYKDSVIGCNLSGD-MRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297
                    ++ ++    +LS               A  L +        +         
Sbjct: 219 KKIDKGQLIKWIEAKKQSSLSKPLPATVLRPRQESFANILQSKITGKNNKIFSVFSRPRF 278

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
            K    + +         +  I  +  L   +  ++  +L    K ++  P T       
Sbjct: 279 GKTNAYLDLAVKIAAKGYKILIIEENYLRRRSTFQKSQSLFPENKDLFQIPITRKDFVSL 338

Query: 358 SQLYDGFFADVD-RQIMDRILRTAP 381
            +L D F  + +  + + ++   + 
Sbjct: 339 DKLADAFLTEDNPSRQLAKLRVISW 363


>gi|326335784|ref|ZP_08201964.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692023|gb|EGD33982.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 1485

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 70/201 (34%), Gaps = 30/201 (14%)

Query: 5   FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     + P           Q A    D + + +   + F   P    +P 
Sbjct: 2   YLIFDTETTGLPRNYNAPISDSENWPRAVQIAWQLHDHKGQLL-EHKDFLITPDGFTIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GI+ + A + GV          +  +   T  I   NI FD +     FYR  
Sbjct: 61  -DAERIHGISTELATKRGVSIHHVFEEFEKALAK--TQYIVGQNIGFDIHIMGAEFYRYG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
                      +S    L V+      + +  + P    G   FK  +L        G  
Sbjct: 118 V----------SSVLSKLPVLDTCTELTAELCRIPGGRAGK--FKYPNLTELHEFLFGTP 165

Query: 171 HVNAHDAKADVYATLALVWLI 191
              AH+A ADV AT    + +
Sbjct: 166 FAEAHNATADVEATARCFFEL 186


>gi|53805082|ref|YP_113230.1| DNA polymerase III subunit epsilon [Methylococcus capsulatus str.
           Bath]
 gi|53758843|gb|AAU93134.1| DNA polymerase III, epsilon subunit [Methylococcus capsulatus str.
           Bath]
          Length = 267

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 55/199 (27%), Gaps = 32/199 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPEAVFIT 61
           ++ D ET G D     R  +   V      E ++       F      +   D  A+ + 
Sbjct: 4   IVLDTETTGLDPKAGHRIIEIGCV------ELLDRRITQNRFHVYINPEREIDAGAIEVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +      V     +     F S     I   +N  FD  +  +    +     R  
Sbjct: 58  GLTNEFLAGMPV-FRNIADDFLNFISGAELII---HNAAFDVGFLDHEL--SLLGENRGR 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
             +     D L + R  +    +               L  L     +++     H A  
Sbjct: 112 IADYCGICDTLAMARKNHPGQRN--------------SLDALCKRYNVDNSRRELHGALL 157

Query: 180 DVYATLALVWLIREKKPKL 198
           D      +   +   +  +
Sbjct: 158 DAEILADVYLAMTGGQITM 176


>gi|124002773|ref|ZP_01687625.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
 gi|123992001|gb|EAY31388.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
          Length = 270

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 27/196 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++A DR  ++A ++     E     E    K   +     E+  +
Sbjct: 7   LKNPLVFFDLETTGTNIAKDRIVEWAFIKALPNGEI----EKDVKKINPEMPIPIESSLV 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +            ++ + +F       + GYN +RFD       F R   D    
Sbjct: 63  HGIYDEHVKDAP-TFKSIAKNLVKFLE--GCDLAGYNIVRFDVPVLVEEFLRVGVDF--- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              N     D   +   +   +                              +AH A+AD
Sbjct: 117 -SVNNRKLVDAQKIFFMMEPRTLT----------------AAYKFYCNKSLEDAHTAEAD 159

Query: 181 VYATLALVWLIREKKP 196
             ATL ++        
Sbjct: 160 TVATLEVLNAQIHHYE 175


>gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 330

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D + E  +              P P  V+I G+T
Sbjct: 25  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTL---VNPQRDPGP--VWIHGLT 78

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + +          +  ++  +N  FD       + R   ++       
Sbjct: 79  SDVLRDAPL-FPDVAEEFAARL---DGRVLVAHNAVFDWQMIAREYARAEREAPVRQR-- 132

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +    A                + KL+ LA   G+    AH A  D    
Sbjct: 133 -------LCTIALSKALDLPL----------PNHKLESLAAHFGVVQQRAHHALDDARVL 175

Query: 185 LALVW 189
                
Sbjct: 176 AEAFR 180


>gi|258422513|ref|ZP_05685421.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9635]
 gi|257847270|gb|EEV71276.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9635]
          Length = 897

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I  +   +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEEKMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|237801479|ref|ZP_04589940.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|330873519|gb|EGH07668.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|331024338|gb|EGI04395.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 203

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 51/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +  Q   +E  +                  +
Sbjct: 1   MERVAVIDFETTGISPNPGCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +  F     +  +  +N  FD  +      R        
Sbjct: 57  TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSRIQR----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                          +   +F+   +       GA + KL  L     +     AH A A
Sbjct: 108 ---------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +  +     
Sbjct: 153 DAEMAANLTAYLTNELRNTH 172


>gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces coelicolor A3(2)]
          Length = 328

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D + E  +              P P  V+I G+T
Sbjct: 23  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTL---VNPQRDPGP--VWIHGLT 76

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + +          +  ++  +N  FD       + R   ++       
Sbjct: 77  SDVLRDAPL-FPDVAEEFAARL---DGRVLVAHNAVFDWQMIAREYARAEREAPVRQR-- 130

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +    A                + KL+ LA   G+    AH A  D    
Sbjct: 131 -------LCTIALSKALDLPL----------PNHKLESLAAHFGVVQQRAHHALDDARVL 173

Query: 185 LALVW 189
                
Sbjct: 174 AEAFR 178


>gi|153840553|ref|ZP_01993220.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149745784|gb|EDM56914.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 229

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 74/251 (29%), Gaps = 32/251 (12%)

Query: 5   FVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            V+ D ET G +          R  +   V +    +       F      D    PEA+
Sbjct: 1   IVVLDTETTGMNQEGGPHYLGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDREIQPEAI 57

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT +  +       E++    +F        +  +N  FD  +    F +   D  
Sbjct: 58  QVHGITDEFLVDKP----EYASIHQEFLDFIKGAELVAHNAPFDTGFMDYEFEK--LDPI 111

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHD 176
               D+     D L + + I+                    L  L    GI+  H   H 
Sbjct: 112 IGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTLHG 157

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNK-NQLRKLIDIQNMTPLVHVSGMFGASRS 235
           A  D      +  L+   +  L             +R++   + +  L   +    A + 
Sbjct: 158 ALLDAEILADVYLLMTGGQTSLEFNANKQEGGVETIRRIEGRKALKVLRATADELEAHQK 217

Query: 236 NTALIAPVAWH 246
              L+    WH
Sbjct: 218 RLELVNDCIWH 228


>gi|91793373|ref|YP_563024.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
 gi|91715375|gb|ABE55301.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
          Length = 242

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +I D ET G +          R  +   V V            +          DPEA+ 
Sbjct: 11  IILDTETTGMNQAGGAIYIGHRIIEIGCVEV-INRRLTGR--TYHQYINPGQSIDPEAIA 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT ++   +     + ++    F        I  +N  FD  +  + F  +      
Sbjct: 68  VHGITDERVANEPRFH-QIAQEFIDFIQGAE---IVAHNASFDVSFMDHEF--SMLQPRG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
               +     D L + + ++    +               L  L    GI++     H A
Sbjct: 122 PKTKDITDILDSLAIAKRLHPGQKN--------------NLDALCKRYGIDNSRRTYHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  L+   + K 
Sbjct: 168 LLDAEILADVYLLMTGGQIKF 188


>gi|300776313|ref|ZP_07086171.1| exonuclease [Chryseobacterium gleum ATCC 35910]
 gi|300501823|gb|EFK32963.1| exonuclease [Chryseobacterium gleum ATCC 35910]
          Length = 254

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 27/200 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
               I+D ET G ++  DR  +   ++V+       S E    +   +     E   I G
Sbjct: 7   KPLCIFDLETTGTNIGKDRIVEICILKVNPD----ASRESKTWRVNPEMPIPKECSEIHG 62

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  +          + + +I +  S   + + G+N+ RFD         R   D      
Sbjct: 63  IYDEDVKDAP-TFRDIAAKIMEMIS--GSDLGGFNSNRFDVPLLAEELLRVGMDFDL--- 116

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N     D   +                                 G    NAH A+ADV 
Sbjct: 117 -NKFRLVDAQTIFH----------------KKEPRNLGAAYQFYCGKTLENAHSAEADVM 159

Query: 183 ATLALVWLIREKKPKLFEYL 202
           AT  ++     K   +   +
Sbjct: 160 ATFEVLDAQVGKYDDIPNEI 179


>gi|188534758|ref|YP_001908555.1| DNA polymerase III subunit epsilon [Erwinia tasmaniensis Et1/99]
 gi|188029800|emb|CAO97680.1| DNA polymerase III epsilon subunit [Erwinia tasmaniensis Et1/99]
          Length = 249

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 62/218 (28%), Gaps = 30/218 (13%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 10  IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L        F++    F +  N   +  +N  FD  +    F +        
Sbjct: 67  HGIADEFLLDKPT----FAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKL------- 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
               G ++ D    +    A +                 L  L     I++     H A 
Sbjct: 116 --QRGIAKTDTFCKITDSLAMARRLF-------PGKRNSLDALCSRYEIDNSKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
            D      +   +   +  L   +   R K Q  + + 
Sbjct: 167 LDSEILAEVFLTMTGGQTSLAFSMEGERGKQQDGETVH 204


>gi|330811888|ref|YP_004356350.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379996|gb|AEA71346.1| Putative exonuclease [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 203

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    +  R  + A V +  Q   ++  +                  +
Sbjct: 1   MERIAVIDFETTGITPSSSCRATEIAVVML-EQGRIVDRYQSLM---NAGVRVPAFIEQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E +    +++F        +  +N  FD  +      R        
Sbjct: 57  TGISNAMLRSAPSAE-KVMNEVNEFV---GITPLLAHNAAFDQKFWDFELGRI------- 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
                            +  F+   +        A + KL  L    G+ H   AH A A
Sbjct: 106 -------------KRTRLQNFACSLLLARRLMPAAPNHKLGTLNTFAGLPHTGQAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +  +  +  
Sbjct: 153 DAEMAANLTAHLASQLRQKH 172


>gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 900

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 27/194 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G  +  D   Q   +   R  + I++          D    P    +T I
Sbjct: 5   TYAVVDLETTGNQLDYDEIIQIG-ITFVRNQQIIDTYHS---MIRTDLEIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +   +      E +  I+        CI   +NI FD  + +N               
Sbjct: 61  EEEMLAQAPY-FNEVAEDIYNQIKD---CIFVAHNISFDLNFIKNA-------------- 102

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +D  ++             +        S++L +LA ++ I   NAH A  D   
Sbjct: 103 -----FDNCNIQFRPKKVMDTLELFKIAFPTDKSYQLSELAQSHNIPLTNAHRADEDATT 157

Query: 184 TLALVWLIREKKPK 197
           T  L+    EK   
Sbjct: 158 TAKLMIKAFEKFEN 171


>gi|28899066|ref|NP_798671.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837020|ref|ZP_01989687.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|260361704|ref|ZP_05774731.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260876852|ref|ZP_05889207.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260897333|ref|ZP_05905829.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260899809|ref|ZP_05908204.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|28807290|dbj|BAC60555.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749793|gb|EDM60538.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|308088283|gb|EFO37978.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091367|gb|EFO41062.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308107229|gb|EFO44769.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308113581|gb|EFO51121.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 240

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 75/253 (29%), Gaps = 32/253 (12%)

Query: 3   NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           N  V+ D ET G +          R  +   V +    +       F      D    PE
Sbjct: 10  NRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDREIQPE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +  +       E++    +F        +  +N  FD  +    F +   D
Sbjct: 67  AIQVHGITDEFLVDKP----EYASIHQEFLDFIKGAELVAHNAPFDTGFMDYEFEK--LD 120

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                 D+     D L + + I+                    L  L    GI+  H   
Sbjct: 121 PTIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNK-NQLRKLIDIQNMTPLVHVSGMFGAS 233
           H A  D      +  L+   +  L             +R++   + +  L   +    A 
Sbjct: 167 HGALLDAEILADVYLLMTGGQTSLEFNANKQEGGVETIRRIEGRKALKVLRATADELEAH 226

Query: 234 RSNTALIAPVAWH 246
           +    L+    WH
Sbjct: 227 QKRLELVNDCIWH 239


>gi|73667124|ref|YP_303140.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
 gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
          Length = 239

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 39/232 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           V+ D ET G D    DR  +   V      E I+       F      +      A  I 
Sbjct: 10  VVLDTETTGLDPDGGDRIIEIGCV------ELIDRVFTGKVFHEYINPERDIPYYATKIH 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT           +E + +  +F +     ++  +N  FD  + +        D  +  
Sbjct: 64  GITIDMLKDKPK-FSEIADKFLEFVNNS---VLVIHNAGFDIKFIKME-----LDKIQKD 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
           +D+     D L + R  +                 S  L  L     I   +   H A  
Sbjct: 115 YDSDFQVVDTLILARKKFPG--------------VSSTLDALCRRFNISLQDRKFHGALL 160

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231
           D      L+  +  +     +   D+   N +    +I N    V +   F 
Sbjct: 161 DA----TLLGKVYVQLMGGLQRSLDFSYSNNIIDTSNINNQCEDVAIEPRFY 208


>gi|325277453|ref|ZP_08143061.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
 gi|324097411|gb|EGB95649.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
          Length = 252

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 57/201 (28%), Gaps = 31/201 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58
             +VI D ET G  V    R  +   V      E I        F      D   D  A+
Sbjct: 7   KRYVILDTETTGMPVGEGHRIIEIGCV------EVIGRRLTGRHFHVYLQPDRESDEGAI 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT    +      A+ +    +F        +  +N  FD  +  N  +      +
Sbjct: 61  NVHGITDAFLVGKPR-FADVADEFFEFIQ---GATLVIHNAAFDVGFINNE-FALLGQQH 115

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHD 176
           R       +  D L + R+ +    +               L  L     I++     H 
Sbjct: 116 RADVSQYCTVLDTLLLARSRHPGQRN--------------SLDALCKRYDIDNSGRELHG 161

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D      +   +   +  
Sbjct: 162 ALLDSELLADVYLAMTGGQTS 182


>gi|237803575|ref|ZP_04591160.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331025557|gb|EGI05613.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 257

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 57/198 (28%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  IVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N  +    D  R  
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGDQDRSD 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                S  D L + R  +    +               L  L    G+++     H A  
Sbjct: 120 ITRHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|320538891|ref|ZP_08038567.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
           Tucson]
 gi|320031051|gb|EFW13054.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
           Tucson]
          Length = 247

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 70/240 (29%), Gaps = 34/240 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V             + KP  D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGRHYHVYVKP--DRLVDPEAYGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +          + +     F        +  +N  FD  +  +  +R        
Sbjct: 66  HGISDEFLADKP-TFDQIADEFLDFIRGGE---LVIHNAAFDIGFMDHE-FRLLQQGIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +     +  D L + R ++                    L  L     I++     H A 
Sbjct: 121 TETF-CTITDSLLMARRLFPG--------------KRNNLDALCSRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYL----YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
            D      +   +   +  +   +        +   +++++       +V+ S    A+ 
Sbjct: 166 LDAEILAEVYLAMTGGQTSMTFQMEGDTQQTNSAQDIQRIVRPAMAMKVVYASDKELAAH 225


>gi|239945175|ref|ZP_04697112.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|239991636|ref|ZP_04712300.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291448639|ref|ZP_06588029.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
 gi|291351586|gb|EFE78490.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
          Length = 237

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 60/196 (30%), Gaps = 16/196 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V +D ET G DV  DR    A VR+D      E             +   +A  I GI
Sbjct: 7   TLVGFDLETTGTDVESDRIVTAALVRLDPDGTVAEQ---RTWLLDPGVVIPEQASAIHGI 63

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
               A + G   A     I    +    +   +   N R+D         R    S    
Sbjct: 64  GTDHARKHGTRAASAVEEIAHAVAEVLRSDVPLVVMNARYDLSLLDRECRRYGLPSVE-E 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             +G     +  ++   +                    LQ L    G+    AHDA AD 
Sbjct: 123 RVDGAPSPVIDPLVIDKHV----------DKYRKGKRALQALCDHYGVTLDGAHDATADA 172

Query: 182 YATLALVWLIREKKPK 197
            A + +V  + E+   
Sbjct: 173 VAAVRVVRRMGERHRP 188


>gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
 gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
          Length = 245

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 52/188 (27%), Gaps = 27/188 (14%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G D     R  +   V +            F      +      A  +  ++
Sbjct: 4   IVFDTETTGLDPLDGHRVVEIGAVEM-VNGALTGR--TFHVYVNPERDMPEAAYRVHKLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q      + +     +   F+      ++  +N  FD  + ++           W+W  
Sbjct: 61  SQFLADKPIFKDPAIGQ--AFYQFCEGAVLVAHNASFDCKFMQHHLDEIGLP---WAWGE 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA----HDAKAD 180
                D L + R  +  SP                L  L    GI+        H A  D
Sbjct: 116 PGDIVDTLQIARKRFPGSPS--------------SLDALCQRFGIDLTEREAQGHGALLD 161

Query: 181 VYATLALV 188
                 + 
Sbjct: 162 SRLLAEVY 169


>gi|303236025|ref|ZP_07322628.1| exonuclease [Prevotella disiens FB035-09AN]
 gi|302483898|gb|EFL46890.1| exonuclease [Prevotella disiens FB035-09AN]
          Length = 284

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 7/159 (4%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   +++D ET G D+  DR  Q + ++V    +  E  E  +     +     E V +
Sbjct: 5   LTKPLIVFDLETTGLDLVKDRIIQISYIKVSPNGD--EERENLY--INPEKEIPKEVVEL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+            + ++ +   F        G+N+ RFD       F R   D    
Sbjct: 61  TGISDADVASAP-TFKQKAKELADKF--IGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFS 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                +++     + R   A + +       ++  T+ K
Sbjct: 118 KCRLIDAQNIFHKMERRNLAAAYEFYCGRKMEEDFTAHK 156


>gi|313204261|ref|YP_004042918.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312443577|gb|ADQ79933.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 255

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 7/123 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G ++  DR  + A  +V     +    E    +   +      +  I
Sbjct: 5   LKNPIVFFDLETTGTNIVTDRIVEIAYHKVSPNGRE----ETKSIRINPEMHIPESSSAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI               ++ I +        + GYN+ RFD         R   D    
Sbjct: 61  HGIYDADVADCP-TFKAVAKEIVRDIE--GCDLAGYNSNRFDIPLLAEELLRADIDIDLM 117

Query: 121 SWD 123
              
Sbjct: 118 KRK 120


>gi|222081448|ref|YP_002540811.1| DNA polymerase III subunit epsilon [Agrobacterium radiobacter K84]
 gi|221726127|gb|ACM29216.1| polymerase epsilon subunit protein [Agrobacterium radiobacter K84]
          Length = 340

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 77/272 (28%), Gaps = 42/272 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           VI D ET G +   D   +   V    D      +   V+           PE   +TGI
Sbjct: 89  VILDTETTGLNHRNDEIIEIGLVAFTFDDFGHIGDVIGVYGGLQQPGTPIPPEITRLTGI 148

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +      +++ +  +     ++  +N  FD  +                  
Sbjct: 149 TDEMVEGQMID----MQQVRRMVA--PADLVIAHNAGFDRPFCEA--------------- 187

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      + A  A++    +      G    KL  L    G  H   H A  D +A
Sbjct: 188 --------FSNVFATKAWACSVSEIDWNARGFEGTKLGYLIGQAGYFHEG-HRAIDDCFA 238

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA------SRSNT 237
            L ++     ++   F  L     ++++R   +        H+ G           R  +
Sbjct: 239 LLEVLDRNVGEEETPFAELVRTSGQSRVRIFAEHSPFEMKDHLKGRGYRWSDGSDGRPKS 298

Query: 238 ALIA----PVAWHPRYKDSVIGCNLSGDMRVF 265
             I      +     Y  S I      D  + 
Sbjct: 299 WWIEIDEDALCDELHYLRSEIYRWEEADPPIQ 330


>gi|283834499|ref|ZP_06354240.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC
           29220]
 gi|291070049|gb|EFE08158.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC
           29220]
          Length = 245

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 57/200 (28%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  VVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +    F +   D  + 
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFLDYIRGAE---LVIHNASFDIGFMDYEFAKLKRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 125 NEF--CKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +  ++   +  +
Sbjct: 169 LDAQILADVYLMMTGGQTTM 188


>gi|317503311|ref|ZP_07961361.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
 gi|315665570|gb|EFV05187.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
          Length = 286

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    V++D ET G D+  DR  Q + ++V    ++ E  +                  +
Sbjct: 5   LKKPLVVFDLETTGLDIVNDRIIQLSFIKVYPDGKE-ERGDHL---INPGRHIPEMITEL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           TGI  +K         + S  + + F        G+N+ RFD       F R   D 
Sbjct: 61  TGIDDEKVKDAP-SFKQISTTLAETFK--GCDFAGFNSNRFDVPMLAEEFLRAGIDF 114


>gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 456

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 28/177 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +   + A  + D   + ++           +    P  V +TGIT
Sbjct: 2   YAILDIETTGGKYNEEGITEIAIHKFDGH-QVVDQFISL---VNPEKEIQPFVVNLTGIT 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +       E ++RI +        ++  +N +FD    R  F R  ++  R +   
Sbjct: 58  NKMLVTAPK-FYEVAKRIVEITE---GTVLIAHNAQFDYRILRTEFRRLGFNFERKT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +  +       P+            S+ L  L  + GI   + H A  D 
Sbjct: 111 -------ICTVELAQKLLPEAE----------SYSLGKLVRSLGIPVSDRHRANGDA 150


>gi|241666520|ref|YP_002984604.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861977|gb|ACS59642.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 326

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 64/217 (29%), Gaps = 32/217 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           VI D ET G +   D   +   V    +      +   ++           PE   +TGI
Sbjct: 75  VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +++ +  R + +        +I  +N  FD  +                  
Sbjct: 135 TDAMVEGQ-LIDIQSLRTLIE-----PADLIIAHNAGFDRPFCEA--------------- 173

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +    A++    +      G    KL  L    G  H   H A  D +A
Sbjct: 174 --------FSKIFTGKAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHEG-HRAVDDCHA 224

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
            L ++   +      F  LY    ++++R   +    
Sbjct: 225 LLEILDREQHDGESPFTELYRASQRSRIRVFAEHSPF 261


>gi|89075025|ref|ZP_01161470.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
 gi|89049264|gb|EAR54828.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
          Length = 241

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
              +++D ET G +         R  +   V +    +       F      D   DPEA
Sbjct: 6   QRIIVFDTETTGMNMTGPHYEGHRIVEIGAVEI-INRKLTGK--TFHVYIKPDRPIDPEA 62

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + + GIT +  +      A+  +    F    +   +  +N  FD  +    F     D 
Sbjct: 63  IDVHGITDEFLIGKP-SYADIHQEFIDFI---DGAELVAHNASFDIGFMDYEFQLMGSDL 118

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAH 175
            +    +     D L++ + ++                    L  L    GI+  H   H
Sbjct: 119 KKTE--DICKVTDTLEMAKRLFPG--------------KRNNLDILCSRYGIDNSHRTLH 162

Query: 176 DAKADVYATLALVWLIREKKPK 197
            A  D      +  ++   +  
Sbjct: 163 GALLDAEILADVYLMMTGGQTS 184


>gi|329903276|ref|ZP_08273408.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548440|gb|EGF33116.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 216

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 29/192 (15%)

Query: 10  YETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           +ET G   AL DR  + A +R+      ++           D    P    +TGIT    
Sbjct: 4   FETTGMSPALGDRVTEVAALRI-VGGVVVDRFVSL---INCDVRISPFISQLTGITQAMV 59

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
            R   VE +    + +F     +  +  +N+ FD+ +      R                
Sbjct: 60  DRAPPVE-QVMPELVRFI---GSDALAAHNVSFDEKFLLAESARLG-------------- 101

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYATLAL 187
                ++ A                G  S+ L  LA + GI     AH A+AD     AL
Sbjct: 102 -----IVPAHAGVICSVKLSRRVFPGLRSYALGALANSLGIRFKGTAHRAEADAEVASAL 156

Query: 188 VWLIREKKPKLF 199
           +  I       +
Sbjct: 157 MLHIAAHLGDHY 168


>gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
 gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 855

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 25/217 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V++D E+ G +   D   Q AG++++ + E IES + F   P        ++  + G
Sbjct: 493 ENVVVFDVESTGINTTEDEIVQIAGIKINNKGEAIESFQRFL-NPKKSV---GDSYLVHG 548

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + Q    +G  +    +   +F       +I  +N+ FD     +   R   +   +  
Sbjct: 549 FSDQFLKENGENKKVVLKDFLKFIKD---TVIVGHNVTFDISILNSELERLSLEKASFK- 604

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               + +D LD+ R  Y                T+ KL+ L+     E  ++HDA  D+ 
Sbjct: 605 ----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           AT  ++ ++  +K K             ++K   I  
Sbjct: 648 ATKDILMVMLREKVKPTIINRMVVYGKYIKKFQPIYE 684


>gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
 gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
          Length = 855

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 25/217 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V++D E+ G +   D   Q AG++++ + E IES + F   P        ++  + G
Sbjct: 493 ENVVVFDVESTGINTTEDEIVQIAGIKINSKGEAIESFQRFL-NPKKSV---GDSYLVHG 548

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + Q    +G  +    +   +F       +I  +N+ FD     +   R   +   +  
Sbjct: 549 FSDQFLKENGENKKVVLKDFLKFIKD---TVIVGHNVTFDISILNSELERLSLEKASFK- 604

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               + +D LD+ R  Y                T+ KL+ L+     E  ++HDA  D+ 
Sbjct: 605 ----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSHDAMDDIL 647

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           AT  ++ ++  +K K             ++K   I  
Sbjct: 648 ATKDILMVMLREKVKPTIINRMVVYGKYIKKFQPIYE 684


>gi|161170263|gb|ABX59233.1| polymerase III epsilon subunit uncultured proteobacterium
           [uncultured marine bacterium EB000_55B11]
 gi|297183792|gb|ADI19915.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 230

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 61/206 (29%), Gaps = 29/206 (14%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G D  A DR  +   V +++           +  P  D    P A  + G++
Sbjct: 4   IVWDTETTGFDPFAGDRIVEIGAVELNQHL-PTGRVYHQYINPERDM--PPGAFEVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V  +  +R    F        +  +N +FD  +               +   
Sbjct: 61  IDFLKDFPV-FSNIARDFIDFV---GDATLIAHNAKFDMKFINAELKNANLPQVPLNQS- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                D L++ R  +  + +               L  L     I++     H A  D  
Sbjct: 116 ----LDTLEIARKKFPGAQN--------------SLDALCRRFNIDNSSRQKHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208
               +   +   +   F      ++K
Sbjct: 158 ILAEVYLELVGGRQPDFSLSLVGQSK 183


>gi|269218897|ref|ZP_06162751.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269212008|gb|EEZ78348.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 240

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 71/237 (29%), Gaps = 19/237 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D   DR    + V V  +          +            A  + GIT ++
Sbjct: 16  FDTETTGIDPKRDRLVTCSLVAVTEEG-----VSKRYWLADPGVEIPERAGAVHGITTER 70

Query: 68  ALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G    E    +    +            N  +D     +   R+   +       G
Sbjct: 71  ARAEGRPSKEVLEEVAALLAEHMGRGHPAVAFNATYDFTLLESELDRHGLPTLAE--RLG 128

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
              + ++D                +        +L+DL    G     + H+A+ADV AT
Sbjct: 129 GEVFPVVDPYLLDR---------SADRYRKGKRRLEDLCRHYGVHAEDDFHNAEADVLAT 179

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           L L+  I  K P+L     +   + +     D                + S    +A
Sbjct: 180 LRLLAAIVRKFPELARAELEAIQERECETHADFMAFLARKAAERGREFTDSFDWPVA 236


>gi|158424105|ref|YP_001525397.1| putative exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158330994|dbj|BAF88479.1| putative exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 334

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 60/185 (32%), Gaps = 32/185 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           VI D ET G D   D   +   V           +  + F           P    +TGI
Sbjct: 83  VIVDTETTGLDHTRDEVIELGMVAFTYREGGAIGDVVDTFSALREPTVPISPVITKLTGI 142

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TP+       ++ E + R  Q        I+  +N RFD  +  +               
Sbjct: 143 TPEMVAGQ-SIDLEAAARFIQ-----PASIVIAHNARFDRPFCEH--------------- 181

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L     +  ++   ++ P  D G    KL  L    G+ H N H A  D +A
Sbjct: 182 --------LVEGFDVKPWACSVVEVPWADFGFEGTKLGYLIGQCGMFH-NGHRAVDDCHA 232

Query: 184 TLALV 188
            L ++
Sbjct: 233 LLEVL 237


>gi|238750479|ref|ZP_04611980.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380]
 gi|238711410|gb|EEQ03627.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380]
          Length = 259

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 30/215 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 14  IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLIDPEAYGV 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +    +F        +  +N  FD  +    F     D  + 
Sbjct: 71  HGISDEFLADKP-TFADITPEFLEFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 126

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 127 E--TFCTITDSLLLARRLFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 170

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            D      +   +   +  L   +   +++N   +
Sbjct: 171 LDAEILAEVYLAMTGGQTSLSFSMEGDQSQNNSSE 205


>gi|56479129|ref|YP_160718.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
           EbN1]
 gi|56315172|emb|CAI09817.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
           EbN1]
          Length = 239

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 55/195 (28%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +             +  P      D EA+ + GIT
Sbjct: 4   IVLDTETTGLDWRNGDRVIEIGCVEL-LNRNLTGRHYHVYINPERG--IDAEAIAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      +  +     F       I   +N  FD  +  +   R            
Sbjct: 61  EDFLADKP-TFSAIAAEFEDFIRDAELII---HNASFDVGFLNHELSRL----------- 105

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
           G  + D L       A   D ++     +      L  L   + I++ +   H A  D  
Sbjct: 106 GRGKLDSLC------AGVIDTLKMAKEQNPGKKASLDALCDRHQIDNASRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 160 LLAEVYLAMTRGQES 174


>gi|323135821|ref|ZP_08070904.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
 gi|322398912|gb|EFY01431.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
          Length = 239

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G D +  DR  +   V +      I +  VF      +     EA  + G++
Sbjct: 4   IVFDTETTGLDPSKGDRVVEIGAVEI---LNLIPTGRVFHAYIDPERDMPEEAFRVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   +      E +     F        +  +N  FD  +    F    +         
Sbjct: 61  REFLSQH-RKFREIAEEFIDFIEDS---PMVAHNAEFDVRFINAEFSMLNFAPLA----- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                D L + R ++  SP                L  L    GI+    + H A  D  
Sbjct: 112 PARIVDTLAIARRLHPGSPA--------------SLDALCQRYGIDLSRRDKHGALLDAG 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|319941413|ref|ZP_08015741.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
 gi|319805033|gb|EFW01863.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
          Length = 246

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 55/200 (27%), Gaps = 27/200 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59
            N  +  D ET G D    DR  +   V ++ R     +           +     EAV 
Sbjct: 4   PNRLITLDTETTGLDAQNGDRIIEIGCVAIEGRMMRSTDEHH-LQIFVNPEREVPEEAVA 62

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GIT +         AE + +   F        +  +N  FD  +      R       
Sbjct: 63  IHGITTEYLQDKPK-FAEIADKFIDFVK---GSTLVIHNAAFDTGFLDMELGRCGRGKI- 117

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                            + Y    D ++   +     +  L  L     I++ N   H A
Sbjct: 118 -----------------SDYCQVIDTVKLAKKLLPGRAVSLDSLCRYYEIDNSNRTLHGA 160

Query: 178 KADVYATLALVWLIREKKPK 197
             D      +   +   +  
Sbjct: 161 LLDAELLAEVYLSLSRGQDT 180


>gi|108759005|ref|YP_633932.1| exonuclease [Myxococcus xanthus DK 1622]
 gi|108462885|gb|ABF88070.1| exonuclease [Myxococcus xanthus DK 1622]
          Length = 988

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 36/192 (18%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFITGI 63
           V  D ET G D  +D   +   +       ++E     +   +P    +       +TG+
Sbjct: 12  VFLDLETTGLDPRVDEVIELGCIFF-ENGREVERFARLYSASRPLPLTI-----RRLTGL 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T             F   I +     +   +  +N  F+  +                  
Sbjct: 66  TDADLEGHPR----FGTDIAELREKLSGWTVVAHNAPFEKGFLP---------------- 105

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 DLL  + A    S + +          S  L+ L    G+     H A +D  A
Sbjct: 106 ------DLLGPIHAPVLDSCELMH--YLHPELPSHSLESLLRWGGLALRQPHRAVSDCEA 157

Query: 184 TLALVWLIREKK 195
             +++    E+ 
Sbjct: 158 VYSVLVHAMERC 169


>gi|325686250|gb|EGD28293.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 930

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 28/203 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             F + D ET G      DR  QF    V +  E +++                    +T
Sbjct: 8   ESFAVVDLETTGTRKEEGDRIIQFGCAIV-KDGEVVKTYSFMM---NPHRKIPLAVTNLT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI  +           ++ +I +        +   +N+ FD  +         +++    
Sbjct: 64  GIDQKMVAGQ-ADFKHYAPKIREILQD---TVFVAHNVNFDFPFLNYELTNAGFEAL--- 116

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +  +                 S+KL+DL  +  I+H N H A +D 
Sbjct: 117 ---TCKAVDTVELAKIAF-------------PTLPSYKLRDLTASLEIKHANPHKADSDA 160

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
           Y T  L+  I +K   L +   +
Sbjct: 161 YGTAVLLLKIIDKLASLPQATLN 183


>gi|238762660|ref|ZP_04623629.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC
           33638]
 gi|238698965|gb|EEP91713.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC
           33638]
          Length = 259

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 30/215 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 14  IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAYGV 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +    +F        +  +N  FD  +    F     D  + 
Sbjct: 71  HGISDEFLADKP-TFADIASEFLEFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 126

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 127 E--TFCTITDSLLLARRLFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 170

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            D      +   +   +  L   +   +++N   +
Sbjct: 171 LDAEILAEVYLAMTGGQTSLSFSMEGDQSQNNSSE 205


>gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 837

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 77/202 (38%), Gaps = 26/202 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N+ V+ D E+ G     D   Q A +R  ++   ++  ++   KP        E+ ++ G
Sbjct: 474 NNIVVLDVESTGLSTIKDDVIQIAAIRYGKEG-VVDQLDILL-KPTKSV---GESYYVHG 528

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            +     ++G+   E  ++   F       ++  +N+ +D    +++  R   +      
Sbjct: 529 FSDDLLQKEGMEPKEALKQFVHFIQ---GAVLVGHNVNYDLQIIKSMMSRYKLEPI---- 581

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 +D LD+   +Y                ++ KL+ L+     E +  H+A  D+ 
Sbjct: 582 -GEYQVYDTLDLAYKVY-------------PKLSNHKLETLSKLIVTETIPTHNAMQDIL 627

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  ++  + +   +  +   +
Sbjct: 628 ATSEVLSHLLKHIEEKKQERLE 649


>gi|167035772|ref|YP_001671003.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1]
 gi|166862260|gb|ABZ00668.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 201

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 50/200 (25%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G    A  R  + A V +      +E  +                  +
Sbjct: 1   MERIAVIDFETTGVSPGAGCRATEVAVVML-EGGRIVERYQSLM---NAGVPVPAFVAGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT            +    + +F        +  +N  FD  +      R        
Sbjct: 57  TGITTAMLRTAP-PVDKVMNEVAEFV---GGTPLLAHNAAFDQKFWDYELSRIGRS---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                               F+   +        A + KL  L    G  +   AH A A
Sbjct: 109 ----------------RSQPFACSLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L+  +     +  
Sbjct: 153 DAEMAANLLQHLTGVLRQDH 172


>gi|257785157|ref|YP_003180374.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
 gi|257473664|gb|ACV51783.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
          Length = 978

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 31/224 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + +  V+ D ET G         + +  ++    E IE  + F            E   +
Sbjct: 15  LEDDIVVLDTETTGLSFKKCSLIEISAAKL-SGREIIERFQTF---VDPGCPIPEEITTL 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT +          E    + +F        +  +N  FD         R F +    
Sbjct: 71  TSITDEDVKGAP-SAKEAVAALAEFV---GGLPVLAHNATFD---------RTFIERVPG 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                ++  D L + R                   +S KL  +A A G      H A  D
Sbjct: 118 GTSVSDTWIDTLSLSRIA-------------LPRLSSHKLSSMAEAFGT-MKVTHRASDD 163

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
           V A   +  ++      L   L               + +   +
Sbjct: 164 VDALCGMWRILLLGLMNLPRGLLAKLASMHDNVEWKFRPIFSYL 207


>gi|269960762|ref|ZP_06175133.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834426|gb|EEZ88514.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 238

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 56/202 (27%), Gaps = 19/202 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++++ D ET G D   D       V +    +  +           D    PE   I  I
Sbjct: 50  NYIVLDLETTGLDSEEDLILSIGWVDI-ANGKV-DLATSQHMYINSDSQIKPETAVINHI 107

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ    +GV   +  R    FF      I+  +    +  +     +R F         
Sbjct: 108 TPQML-SEGVSIHDAMR---AFFHAAKGKILVAHACVVETQFINQYLHRVF--------K 155

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   LD M                        L       G+   N H+A AD  A
Sbjct: 156 LSEPPLVWLDTMCIEKHLQKAI-----NPRDEIDVTLSGTRARYGLPEYNGHNALADAVA 210

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
           T  L+   + +     +     
Sbjct: 211 TAELLLAQKTRITPQGKTTIGT 232


>gi|262404569|ref|ZP_06081124.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262349601|gb|EEY98739.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 247

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 54/203 (26%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              V+ D ET G +          R  +   V +    +       F      D     E
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQLE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +          E+ +   +F        +  +N  FD  +    F      
Sbjct: 67  AIEVHGITDEFLRDKP----EYKQVHEEFLDFIKGAELVAHNAPFDVGFMDYEFA----- 117

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                   G S     D  +     +     +P          L  L    GI+  H   
Sbjct: 118 ------KLGGSVIKTTDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|325066430|ref|ZP_08125103.1| DNA polymerase III subunit epsilon-like protein [Actinomyces oris
           K20]
          Length = 259

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 45/172 (26%), Gaps = 25/172 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     D   + A V  D       S              D     I G+ 
Sbjct: 42  YAVVDLETTGLSPTTDSILEVALVLTDAAGRVEHSWSTL---IDPGVGVDVGPTHIHGLV 98

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++ +       E +  +    +     ++ +N      + ++ +  R   D        
Sbjct: 99  AEELIGAPG-FDEVADLLVADLA--GRPVVAHNARFDVGFLTQALGTRGLLD-------- 147

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                      R         ++W        S +L       G+E    H+
Sbjct: 148 -----------RGARVPRVCTMEWAHHFMTTPSRRLTTCCEVAGVEIGRHHN 188


>gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 343

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D      +           +  P P  V+I G+T
Sbjct: 21  YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTL---VNPERDPGP--VWIHGLT 74

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   E +  +    +     ++  +N  FD       + R    +       
Sbjct: 75  SDVLEGAPL-FPEVAEELSARLADR---VLVAHNAAFDWSMIAREYARASVVAPVEQ--- 127

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   + + + +                  + KL  LA   G+    AH A  D    
Sbjct: 128 ---RLCTIALAKELRL-------------PLPNHKLASLAAHFGVVQQQAHHALDDARVL 171

Query: 185 LALVW 189
                
Sbjct: 172 AEAFR 176


>gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 341

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D      +           +  P P  V+I G+T
Sbjct: 19  YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTL---VNPERDPGP--VWIHGLT 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   E +  +    +     ++  +N  FD       + R    +       
Sbjct: 73  SDVLEGAPL-FPEVAEELSARLADR---VLVAHNAAFDWSMIAREYARASVVAPVEQ--- 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   + + + +                  + KL  LA   G+    AH A  D    
Sbjct: 126 ---RLCTIALAKELRL-------------PLPNHKLASLAAHFGVVQQQAHHALDDARVL 169

Query: 185 LALVW 189
                
Sbjct: 170 AEAFR 174


>gi|254295485|ref|YP_003061508.1| DNA polymerase III subunit epsilon [Hirschia baltica ATCC 49814]
 gi|254044016|gb|ACT60811.1| DNA polymerase III, epsilon subunit [Hirschia baltica ATCC 49814]
          Length = 233

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 62/221 (28%), Gaps = 29/221 (13%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G      DR  +   V +            F      +     + + ITGIT
Sbjct: 4   IVFDTETTGLSAKDGDRIIELGAVEI-VDLLPTGR--EFHRLIYPERQVSEDTIRITGIT 60

Query: 65  PQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            +      V  +    +    F        +  +N  FD  +      R     +     
Sbjct: 61  DEMLKGKPVFSDPSVYKEFLDFIEDS---PLVAHNAEFDRGFLNEEMRRVGGPDFPKE-- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                 D L + R  +  +              S  L  L     I       H A  D 
Sbjct: 116 ---RCVDTLALAREKFPGA--------------SATLDALCKRFDISLAKRDVHTAVVDS 158

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
               ++   +R  +   FE+  + ++  ++      +   P
Sbjct: 159 QLLASVYLELRGGRAHSFEFENEGQSDAEVAFKRTQRRQRP 199


>gi|315500766|ref|YP_004089567.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis
           excentricus CB 48]
 gi|315418778|gb|ADU15416.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis
           excentricus CB 48]
          Length = 324

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 32/209 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           VI D ET G + A D   +   +  R D +    +  EV+       +        +TGI
Sbjct: 73  VIIDTETTGLNKAEDAVIEIGAIAFRFDDRGVVGDLIEVYGALQDPGFPIPANITELTGI 132

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                    +        + +    P   II +N                          
Sbjct: 133 DDAMVKGQSIDFH-----VLEALIKPADLIIAHNAAFDR--------------------- 166

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L    A  A++    +   +  G    KL  L   +G  H   H A  D +A
Sbjct: 167 ---PYCERLSPAFADKAWACSNSEIDWKARGFEGSKLGYLITQSGYFHDG-HRAVDDCFA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLR 212
            L ++          F  LY+   ++++R
Sbjct: 223 LLEVLLQPGVNGITPFSELYNASQRDRVR 251


>gi|227505453|ref|ZP_03935502.1| possible exonuclease, RNase T and DNA polymerase III
           [Corynebacterium striatum ATCC 6940]
 gi|227197946|gb|EEI77994.1| possible exonuclease, RNase T and DNA polymerase III
           [Corynebacterium striatum ATCC 6940]
          Length = 1118

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 58/187 (31%), Gaps = 28/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D+ET G   + DR  +   V +D    ++EST     +P  D        F+ 
Sbjct: 4   PKRYAVVDFETTGFG-STDRVIEIGVVLLDHN-REVESTWETLVQPQRDIPNS----FVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITP   +   +   E +          N   +  +N  F+  + +  F         + 
Sbjct: 58  HITPTDVVDAPL-FGEVAGEFFDLL---NGRTVVAHNAPFEVRFLQREFSNLGVAWPNY- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
              G    D   + +  Y                    L+      GI +   H A AD 
Sbjct: 113 ---GAWVVDTKRLFQQTYPGEGTT--------------LEHALKVVGITNARPHSALADT 155

Query: 182 YATLALV 188
            AT  L 
Sbjct: 156 LATAELF 162


>gi|221140978|ref|ZP_03565471.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|302751286|gb|ADL65463.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 897

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|313884171|ref|ZP_07817937.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620618|gb|EFR32041.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 849

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 29/189 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT    I D ET G ++   DR  Q A + +  + +  +  ++       +         
Sbjct: 1   MTTPIAIVDIETTGPNLDQGDRIIQIAALII-EEGQVTKEYDML---INPNMPIPSHISK 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+ ++  +     ++     H        CI   +NI FD  + +  F+    D   
Sbjct: 57  LTGISNEQVQKAPH-LSQVIDLWHYRLKD---CIFVAHNINFDLRFLKQCFHHFGLDFN- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D + + +                  A  F L DL+    +    AH A A
Sbjct: 112 ------PPALDTVKLAKIF-------------MPQAIGFNLTDLSQEMNLFFDQAHQALA 152

Query: 180 DVYATLALV 188
           D   T  L+
Sbjct: 153 DAKITAYLL 161


>gi|21283074|ref|NP_646162.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486295|ref|YP_043516.1| hypothetical protein SAS1398 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253732097|ref|ZP_04866262.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733298|ref|ZP_04867463.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|297207885|ref|ZP_06924318.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911970|ref|ZP_07129413.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|81827855|sp|Q6G9A7|DING_STAAS RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81847815|sp|Q8NWP2|DING_STAAW RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|21204514|dbj|BAB95210.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244738|emb|CAG43174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253724144|gb|EES92873.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728838|gb|EES97567.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|296887459|gb|EFH26359.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300886216|gb|EFK81418.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 897

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           haemofelis str. Langford 1]
          Length = 1393

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 95/360 (26%), Gaps = 30/360 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + ++D ET G +   D   + A  +      +I +   +F               +T IT
Sbjct: 351 YCVFDIETTGLNPLFDEITEIAIYKY-SNKRRIATYHSYF---KISEPLKQHIKDLTHIT 406

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +     G       + +  F     + ++ +N I FD  +    + +   +        
Sbjct: 407 DELLAEKGQDLEVVLKEVKDFTQ--GSVLVAHNGIEFDFPFLNAKYIKLGMEPLSNP--- 461

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                 L+D +R       +        +   S  L  +    G   +  +AH A  DV 
Sbjct: 462 ------LIDTLRLSQTIFSE--------EKYKSHSLGAICKRVGVEYDLEHAHSADFDVD 507

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV----HVSGMFGASRSNTA 238
               +     E K K +    +   K     + +      +      V     A   +  
Sbjct: 508 VLWQVFMYSLEPKLKEWGVNLEDGLKEANDAVFNKGVFNYIHGHKALVYVKNQAGVKDLY 567

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
            I  +A   +Y         S      ++L  V            L+  +   +K     
Sbjct: 568 EILSIAQTEQYLGKPQISRNSIS-SYRENLLIVSPPLNSEPIALLLRDDISTFLKASEFY 626

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
              I+ P  +   E         +       L         +    Y   Y    +    
Sbjct: 627 DYLIIPPPSHFVHEVSRNNLDTEEVNALLAKLYELSKEHSIKLLFNYAARYIHPQEYQQY 686


>gi|294815713|ref|ZP_06774356.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294328312|gb|EFG09955.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 251

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 16/192 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A V   R  E +                  +A  I GIT ++
Sbjct: 22  FDLETTGTDPREARIVT-AAVVEARAGEPVRRRTWLA---DPGVRIPAQASAIHGITSER 77

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G    E +  +             +   N  FD         R    S       G
Sbjct: 78  AAAEGRPAREVADEVAAELCGYWARGVPVVAYNAAFDLSLLAAEIRRYGLPSLSD-RLGG 136

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                ++D      A                   L+ ++   G+   +AHDA AD  A +
Sbjct: 137 RPTGPVIDPYTIDRAV---------DRYRKGKRTLEAVSAEYGVPLEDAHDATADALAAV 187

Query: 186 ALVWLIREKKPK 197
            +   +  + P 
Sbjct: 188 RVAGALALRHPS 199


>gi|293372861|ref|ZP_06619235.1| exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|292632150|gb|EFF50754.1| exonuclease [Bacteroides ovatus SD CMC 3f]
          Length = 266

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 76/250 (30%), Gaps = 29/250 (11%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
            +D ET G ++  DR  +   ++V     +   T     +   +      +  I GI   
Sbjct: 18  FFDLETTGTNINTDRIVEICYLKVYPNGNEEAKTL----RINPEMHIPEASSAIHGIYDA 73

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
             +       E ++ I +        + G+N+ RFD       F R              
Sbjct: 74  DVVDCP-TFKEVAKNIARDIE--GCDLAGFNSNRFDIPVLAEEFLRAG------------ 118

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +D+      F    + +   +    S   +     N     +AH A+AD  AT  
Sbjct: 119 -----VDIDMTKRKFVDVQVIFHKMEQRTLSAAYKFYCDKN---LEDAHTAEADTRATYE 170

Query: 187 LVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA- 244
           ++   +        +  +     +  + +     M    +   +F   +     +A V  
Sbjct: 171 VLKAQLDRYSDLQNDIAFLADYSSFSKNVDFAGRMVYDDNGVEVFNFGKYKGMSVAEVLK 230

Query: 245 WHPRYKDSVI 254
             P Y   ++
Sbjct: 231 KDPGYYSWIL 240


>gi|270263405|ref|ZP_06191674.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13]
 gi|270042289|gb|EFA15384.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13]
          Length = 246

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 53/212 (25%), Gaps = 30/212 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V             + KP  D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGRHYHVYVKP--DRLVDPEAYGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +          + +     F       ++ +N                F D    
Sbjct: 66  HGISDEFLADKP-TFDQIADEFIDFIR--GGELVIHNASFDIG----------FMDHEFR 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
               G  + D    +      +                 L  L     I++     H A 
Sbjct: 113 MLQKGLPKTDTFCTITDSLLMARRLF-------PGKRNNLDALCGRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            D      +   +   +  +   +      N 
Sbjct: 166 LDAEILAEVYLAMTGGQTSMAFQMEGDTQHND 197


>gi|326444059|ref|ZP_08218793.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 285

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 16/192 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A V   R  E +                  +A  I GIT ++
Sbjct: 56  FDLETTGTDPREARIVT-AAVVEARAGEPVRRRTWLA---DPGVRIPAQASAIHGITSER 111

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G    E +  +             +   N  FD         R    S       G
Sbjct: 112 AAAEGRPAREVADEVAAELCGYWARGVPVVAYNAAFDLSLLAAEIRRYGLPSLSD-RLGG 170

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                ++D      A                   L+ ++   G+   +AHDA AD  A +
Sbjct: 171 RPTGPVIDPYTIDRAV---------DRYRKGKRTLEAVSAEYGVPLEDAHDATADALAAV 221

Query: 186 ALVWLIREKKPK 197
            +   +  + P 
Sbjct: 222 RVAGALALRHPS 233


>gi|254392979|ref|ZP_05008143.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|197706630|gb|EDY52442.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 240

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 16/192 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A V   R  E +                  +A  I GIT ++
Sbjct: 11  FDLETTGTDPREARIVT-AAVVEARAGEPVRRRTWLA---DPGVRIPAQASAIHGITSER 66

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G    E +  +             +   N  FD         R    S       G
Sbjct: 67  AAAEGRPAREVADEVAAELCGYWARGVPVVAYNAAFDLSLLAAEIRRYGLPSLSD-RLGG 125

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                ++D      A                   L+ ++   G+   +AHDA AD  A +
Sbjct: 126 RPTGPVIDPYTIDRAV---------DRYRKGKRTLEAVSAEYGVPLEDAHDATADALAAV 176

Query: 186 ALVWLIREKKPK 197
            +   +  + P 
Sbjct: 177 RVAGALALRHPS 188


>gi|313668201|ref|YP_004048485.1| DNA polymerase III subunit [Neisseria lactamica ST-640]
 gi|313005663|emb|CBN87106.1| putative DNA polymerase III subunit [Neisseria lactamica 020-06]
          Length = 470

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  D   + A V+      +    E +                +TGI+  
Sbjct: 32  VVDLESTGGNLYEDMVTEVALVKF-----EQGRAERYEWLVNPQKPIPKFVAELTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +     +    +     +   N  
Sbjct: 183 YLEYSLSEHGVEEWIRQCFRLMNPK 207


>gi|313123658|ref|YP_004033917.1| ATP-dependent DNA helicase ding [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280221|gb|ADQ60940.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 929

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 28/203 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             F + D ET G      DR  QF    V +  E +++                    +T
Sbjct: 7   ESFAVVDLETTGTRKEEGDRIIQFGCAIV-KDGEVVKTYSFMM---NPHRKIPLAVTNLT 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI  +           ++ +I +        +   +N+ FD  +         +++    
Sbjct: 63  GIDQKMVAGQ-ADFKHYAPKIREILQDK---VFVAHNVNFDFPFLNYELTNAGFEAL--- 115

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +  +                 S+KL+DL  +  I+H N H A +D 
Sbjct: 116 ---TCKAVDTVELAKIAF-------------PTLPSYKLRDLTASLEIKHANPHKADSDA 159

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
           Y T  L+  I +K   L +   +
Sbjct: 160 YGTAVLLLKIIDKLASLPQATLN 182


>gi|226227968|ref|YP_002762074.1| exonuclease [Gemmatimonas aurantiaca T-27]
 gi|226091159|dbj|BAH39604.1| exonuclease [Gemmatimonas aurantiaca T-27]
          Length = 323

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 52/187 (27%), Gaps = 35/187 (18%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP----ADDYLPDPEAVFIT 61
           ++ D ET G D A D   +F  V  D   E                        EA  IT
Sbjct: 50  LVVDVETTGLDTARDVIIEFGAVPFDFDGE--GRVYTVHPPLSYFEDPGRPIPAEASAIT 107

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT        + +A     + Q        ++  +N  FD                   
Sbjct: 108 GITDDDVRGKRIDDAAVLAALDQ------AVLVIAHNAGFDRRM---------------- 145

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   +      A   ++    + P    G+ S KL  L           H A  D 
Sbjct: 146 -------LERRLPAFAAKHWACSQQEVPWVRFGSRSQKLDYLLYRIARAFHTGHRAADDC 198

Query: 182 YATLALV 188
            ATL L+
Sbjct: 199 LATLHLL 205


>gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
           KM-6054]
          Length = 329

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 50/185 (27%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G     DR       ++D   E  +              P P  V+I G+T
Sbjct: 25  FAVVDVETTGLG-RSDRVISAGVYQLDPDGEITDHWYTL---VNPQRDPGP--VWIHGLT 78

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E +    +        ++  +N  FD       F R    +       
Sbjct: 79  SEVLAGAP-TFPEVAAEFAERLRDR---VLVAHNALFDWNMISREFSRAGLRAPVEQ--- 131

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   + + R +                  + KL  LA    +    AH A  D    
Sbjct: 132 ---RLCTMVLARDLRL-------------PLPNGKLSSLAAHFDVRQRQAHHALDDARVL 175

Query: 185 LALVW 189
             +  
Sbjct: 176 AEVFR 180


>gi|323495336|ref|ZP_08100414.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323310407|gb|EGA63593.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 245

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 58/204 (28%), Gaps = 31/204 (15%)

Query: 2   TNHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
            +  V+ D ET G +          R  +   V +    +       F      D    P
Sbjct: 9   QHRIVVLDTETTGMNREGGPHYQDHRIIEIGAVEI-INRKLTGRH--FHVYIKPDREIQP 65

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           +AV + GIT +  +       ++     +F        +  +N  FD  +  + F     
Sbjct: 66  DAVEVHGITDEFLVDKP----DYRDVHAEFLEFIKGAELVAHNAPFDVGFMDHEFG--ML 119

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVN 173
           D       +     D L + + I+                    L  L    GI+  H  
Sbjct: 120 DPSIGKTVDYCKVTDTLAMAKKIFPG--------------KRNNLDILCDRYGIDNSHRT 165

Query: 174 AHDAKADVYATLALVWLIREKKPK 197
            H A  D      +  L+   +  
Sbjct: 166 LHGALLDAEILADVYLLMTGGQTS 189


>gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
 gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
          Length = 1447

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/478 (12%), Positives = 140/478 (29%), Gaps = 54/478 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V +D ET G         +F    + +    I   + F              + +TGIT
Sbjct: 416 YVCFDIETTGLSPRYHELIEFGATII-KNGSVISREQFFIKAKNS---LSAFTINLTGIT 471

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q    +G+       +I + F      I   +N  FD  +    F  N  +  + ++  
Sbjct: 472 DQMLKNEGLELKPALLKISKLFENR---IAVAHNSTFDMNFLFQKFLDNKMEIPKTTF-- 526

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                  +D +           +           +L++     G       AH A  D  
Sbjct: 527 -------IDTLVVSRLLFSKDSK----------HRLENYVGRLGIIYNSDAAHRADYDAE 569

Query: 183 ATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
                    +          + + R+    +      +    V      G       +  
Sbjct: 570 ILANAWIPSMNLLAEININTIVELRDYKSNQLYFKKFSDDVSVIALNQKGLKELFNFVSL 629

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQD---LDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
            +      +  +   ++     +      L+ + +    F +  EL       I++    
Sbjct: 630 SLTERMYNQPKIFFEDIKRSKNILVGSSTLNGLVINALFFKNDTEL----RNYIEKFDYI 685

Query: 299 KCPILMPIDYCK---KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
           + P L    +         E      K  ++    +++        + I     T+ S  
Sbjct: 686 EIPCLSNFKHWIEYGDFKEEDIKNALKYLVKTAKEMKKIVVAVGDVRYINETEKTAYSLL 745

Query: 356 VDSQLYDGF-------FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408
           V ++   G            D ++ +R   T  + +   +    D+    L +     N 
Sbjct: 746 VYAKAIGGDRHYLFDYKRKHDLKLPERFYLTTEQMIEEFSF-LEDK----LAYEIVVEN- 799

Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
            + +++K  +  +E  KK L   + ++   KL+ L  +   ++  E L   +   ++ 
Sbjct: 800 TNLITDKINE--IEVIKKDLYTPKFDDSPTKLKDLVYKTAREKYGEKLPEIVENRIKK 855


>gi|321223519|gb|EFX48584.1| Putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 194

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 55/190 (28%), Gaps = 20/190 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N ++  D ET G         +   +  D          +             EA+ I G
Sbjct: 18  NDYLFIDTETTGLG-DDAEIVEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHG 69

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          +    + + F       + YN   FD    R  +  N   S    W
Sbjct: 70  ITNEMVAFAPA-WTDICGAVEEIFRRFG--FVIYNA-DFDLRLIRQTYALNERPSEGAPW 125

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADV 181
                    +           +    P R +G    KL D A   G +    AH A AD 
Sbjct: 126 MLAAHSVCAM-------KLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEDKAHRALADC 178

Query: 182 YATLALVWLI 191
             TL LV  +
Sbjct: 179 KMTLGLVRAL 188


>gi|149908875|ref|ZP_01897535.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
 gi|149808149|gb|EDM68090.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
          Length = 245

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 31/200 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +++D ET G ++         R  +   + +            +      D L DPEA+ 
Sbjct: 16  IVFDTETTGMNMGAGGVHIGHRVIEIGCIEL-INRRPTGR--TYHVYIKPDRLVDPEAIA 72

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +         A  +     F        +  +N  FD  +  +  +R       
Sbjct: 73  VHGITDEFLQDKP-SFATIADEFIAFIVGAE---LVAHNASFDTNFLDHE-FRLLNKGLP 127

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177
            +        D L + + ++                    L  L    GI+  H   H A
Sbjct: 128 AT-KEICKITDTLAIAKKLFPG--------------KRNNLDVLCTRYGIDNSHRTLHGA 172

Query: 178 KADVYATLALVWLIREKKPK 197
             D      +   +   + K
Sbjct: 173 LLDAEILADVYLFMTGGQTK 192


>gi|109898818|ref|YP_662073.1| DNA polymerase III subunit epsilon [Pseudoalteromonas atlantica
           T6c]
 gi|109701099|gb|ABG41019.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas
           atlantica T6c]
          Length = 251

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 54/194 (27%), Gaps = 12/194 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D+ET G +   D       V +  +  + +  + +  KP  D     ++V I GIT
Sbjct: 60  LVALDFETTGLNPKTDSIVSIGLVAMTVKRIRCQEAQHWIIKP--DTELKTKSVVIHGIT 117

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                        F+R + +        ++  ++   +  +  +       +        
Sbjct: 118 HSDVADAPS----FNRVLDELLQHLQGKVVVAHHKDIEVRFLNSALKHYIGEEIV----- 168

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + +                      S +L D      + +   H+A  D  A 
Sbjct: 169 -FPCIDTMALEARFSRTIKRTFLRSLLGQKTPSIRLTDCRSRYRLPYYRQHNALTDALAC 227

Query: 185 LALVWLIREKKPKL 198
             L+          
Sbjct: 228 AELLQAQVATHYPD 241


>gi|302333066|gb|ADL23259.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 897

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|15924445|ref|NP_371979.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927036|ref|NP_374569.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus N315]
 gi|57650410|ref|YP_186339.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus COL]
 gi|87161026|ref|YP_494043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195189|ref|YP_499990.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148267941|ref|YP_001246884.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394004|ref|YP_001316679.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221578|ref|YP_001332400.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509623|ref|YP_001575282.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253315964|ref|ZP_04839177.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006242|ref|ZP_05144843.2| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795489|ref|ZP_05644468.1| DnaQ family protein [Staphylococcus aureus A9781]
 gi|258413298|ref|ZP_05681574.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9763]
 gi|258420595|ref|ZP_05683537.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9719]
 gi|258426791|ref|ZP_05688011.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9299]
 gi|258444789|ref|ZP_05693118.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8115]
 gi|258447377|ref|ZP_05695521.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6300]
 gi|258449738|ref|ZP_05697839.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6224]
 gi|258451113|ref|ZP_05699148.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5948]
 gi|258454593|ref|ZP_05702557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5937]
 gi|269203080|ref|YP_003282349.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892951|ref|ZP_06301186.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8117]
 gi|282927982|ref|ZP_06335591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A10102]
 gi|284024454|ref|ZP_06378852.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848419|ref|ZP_06789165.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9754]
 gi|295407205|ref|ZP_06817005.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8819]
 gi|296275347|ref|ZP_06857854.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297244629|ref|ZP_06928512.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8796]
 gi|304380963|ref|ZP_07363621.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|81832505|sp|Q7A5K4|DING_STAAN RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81855933|sp|Q99U34|DING_STAAM RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81859586|sp|Q5HFW8|DING_STAAC RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|122539544|sp|Q2FYH5|DING_STAA8 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|123485907|sp|Q2FGY5|DING_STAA3 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|13701253|dbj|BAB42548.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247226|dbj|BAB57617.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|57284596|gb|AAW36690.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127000|gb|ABD21514.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202747|gb|ABD30557.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741010|gb|ABQ49308.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946456|gb|ABR52392.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150374378|dbj|BAF67638.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368432|gb|ABX29403.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257789461|gb|EEV27801.1| DnaQ family protein [Staphylococcus aureus A9781]
 gi|257839862|gb|EEV64330.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9763]
 gi|257843543|gb|EEV67950.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9719]
 gi|257849952|gb|EEV73910.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9299]
 gi|257850282|gb|EEV74235.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8115]
 gi|257853568|gb|EEV76527.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6300]
 gi|257856986|gb|EEV79886.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6224]
 gi|257861168|gb|EEV83981.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5948]
 gi|257862976|gb|EEV85740.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5937]
 gi|262075370|gb|ACY11343.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940948|emb|CBI49332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282590279|gb|EFB95359.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A10102]
 gi|282764948|gb|EFC05073.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8117]
 gi|285817135|gb|ADC37622.1| DinG family ATP-dependent helicase YoaA [Staphylococcus aureus
           04-02981]
 gi|294824445|gb|EFG40868.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9754]
 gi|294967918|gb|EFG43947.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8819]
 gi|297178659|gb|EFH37905.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8796]
 gi|304340488|gb|EFM06424.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315129170|gb|EFT85165.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|315197799|gb|EFU28133.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320140373|gb|EFW32229.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142700|gb|EFW34503.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314132|gb|AEB88545.1| Probable ATP-dependent helicase dinG -like protein [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329723190|gb|EGG59721.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727432|gb|EGG63888.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 897

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|282916722|ref|ZP_06324480.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282319209|gb|EFB49561.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus D139]
 gi|298694746|gb|ADI97968.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323439542|gb|EGA97263.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
          Length = 897

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|319953942|ref|YP_004165209.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola
           DSM 14237]
 gi|319422602|gb|ADV49711.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola
           DSM 14237]
          Length = 258

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 7/117 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G +VA DR  + A +++     K    E        + +   E + +
Sbjct: 5   LTRPICFFDLETTGINVAKDRVVEIAILKIHPNGNK----ESKTWLVNPEMVIPDEVIAV 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            GIT +K   +     E S+ I+      +  + G+N+ RFD         R+  D 
Sbjct: 61  HGITNEKVANEP-TFKELSKDIYNMIKDSD--LGGFNSDRFDIPLLAEEMLRSEIDF 114


>gi|261211353|ref|ZP_05925641.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260839308|gb|EEX65934.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 247

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 54/203 (26%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              V+ D ET G +          R  +   V +    +       F      D     E
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQLE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +          E+     +F        +  +N  FD  +    F      
Sbjct: 67  AIEVHGITDEFLRDKP----EYKEVHAEFLDFIKGAELVAHNAPFDVGFMDYEFA----- 117

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                   G+S     D  +     +     +P          L  L    GI+  H   
Sbjct: 118 ------KLGSSIGKTTDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|213586760|ref|ZP_03368586.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 192

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 54/188 (28%), Gaps = 20/188 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N ++  D ET G         +   +  D          +             EA+ I G
Sbjct: 24  NDYLFIDTETTGLG-DDAEIVEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHG 75

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          +    + + F       + YN   FD    R  +  N   S    W
Sbjct: 76  ITNEMVAFAPA-WTDICGAVEELFRRFG--FVIYNA-DFDLRLIRQTYALNERPSEGAPW 131

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADV 181
                    +           +    P R +G    KL D A   G +    AH A AD 
Sbjct: 132 MLAAHSVCAM-------KLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKAHRALADC 184

Query: 182 YATLALVW 189
             TL LV 
Sbjct: 185 KMTLGLVR 192


>gi|323442219|gb|EGA99850.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
          Length = 897

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|296101380|ref|YP_003611526.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055839|gb|ADF60577.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 243

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 58/208 (27%), Gaps = 30/208 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +    F +   D  + 
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFLDYIKGAE---LVIHNASFDIGFMDYEFSKLQRDIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 122 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYR 206
            D      +   +   +  +   + +  
Sbjct: 166 LDAQILADVYLAMTGGQTSMKFSMENES 193


>gi|300812428|ref|ZP_07092858.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496595|gb|EFK31687.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 930

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 28/202 (13%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F + D ET G      DR  QF    V +  E +++                    +TG
Sbjct: 9   SFAVVDLETTGTRKEEGDRIIQFGCAIV-KDGEVVKTYSFMM---NPHRKIPLAVTNLTG 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  +           ++ +I +        +   +N+ FD  +         +++     
Sbjct: 65  IDQKMVAGQ-ADFKHYAPKIREILQD---TVFVAHNVNFDFPFLNYELTNAGFEAL---- 116

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D +++ +  +                 S+KL+DL  +  I+H N H A +D Y
Sbjct: 117 --TCKAVDTVELAKIAF-------------PTLPSYKLRDLTASLEIKHANPHKADSDAY 161

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
            T  L+  I +K   L +   +
Sbjct: 162 GTAVLLLKIIDKLASLPQATLN 183


>gi|295395919|ref|ZP_06806104.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971192|gb|EFG47082.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 536

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET GRD         A + +        + E +      +     EA  + GIT + 
Sbjct: 322 FDLETTGRDPHTAHIVSAALIDMR-------THETWEWLIYPEGEIPAEASAVHGITTEY 374

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
           A  +G+  A+   +IHQ F+      I  +N  +D         +               
Sbjct: 375 ARENGMPRAQAIAQIHQVFAERTPACIVAHNAPYDLTIFARECAQYGLALP------DFF 428

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D L + +    F                  L  +    G+   NAHDA AD  A+  +
Sbjct: 429 VIDTLVIDKHAEPFR------------KGPRTLDAVCARWGVSLDNAHDATADARASGLV 476

Query: 188 VWLIREKKPK 197
              I +  P+
Sbjct: 477 ALAIADAFPE 486


>gi|258648468|ref|ZP_05735937.1| exonuclease [Prevotella tannerae ATCC 51259]
 gi|260851225|gb|EEX71094.1| exonuclease [Prevotella tannerae ATCC 51259]
          Length = 256

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 59/198 (29%), Gaps = 27/198 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   + +D E  G  +A DR  + + ++V     +    E    +   +     EA  +
Sbjct: 6   LTRPIIFFDIEATGLQIARDRIVELSYIKVFPDGRE----ESKTLRFNPEMHISAEATAV 61

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E S  +   F   +  + G+N+  FD       F R   D    
Sbjct: 62  NGIKDEDVADCP-TFKEKSGELTAIFQSCD--LAGFNSNVFDVPMLVEEFARAGSDFDIT 118

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+  +                         +         +  NAH A AD
Sbjct: 119 KSKL----VDVQTIYH----------------KLEPRNLIAAYKFYCNKDLHNAHTAMAD 158

Query: 181 VYATLALVWLIREKKPKL 198
             AT  ++    +K  K 
Sbjct: 159 TQATYEVLKAQLDKYGKE 176


>gi|258621021|ref|ZP_05716055.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
 gi|262166312|ref|ZP_06034049.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
 gi|258586409|gb|EEW11124.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
 gi|262026028|gb|EEY44696.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
          Length = 247

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 53/203 (26%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              V+ D ET G +          R  +   V +    +       F      D     E
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQLE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +          E+     +F        +  +N  FD  +    F      
Sbjct: 67  AIEVHGITDEFLRDKP----EYKDVHDEFLDFIKGAELVAHNAPFDVGFMDYEFA----- 117

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                   G S     D  +     +     +P          L  L    GI+  H   
Sbjct: 118 ------KLGGSVVKTTDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|114571517|ref|YP_758197.1| DNA polymerase III subunit epsilon [Maricaulis maris MCS10]
 gi|114341979|gb|ABI67259.1| DNA polymerase III, epsilon subunit [Maricaulis maris MCS10]
          Length = 230

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 8/125 (6%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G D    DR  +   V +   +        F            E V ITG+T
Sbjct: 4   IVFDTETTGLDPNTGDRVTELGCVEI-IDFIPTGK--TFHAYVNPQRSVPKEVVEITGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   E   +  +F        +  +N  FD  +      R   D Y      
Sbjct: 61  TEFLADKPL-FDEVGPQFVEFV---GDATMVAHNAPFDRGFINMELARLGLDIYPDDRFK 116

Query: 125 GNSRW 129
             +R 
Sbjct: 117 DTARI 121


>gi|312829847|emb|CBX34689.1| dnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus ECT-R 2]
          Length = 897

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|28871797|ref|NP_794416.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855049|gb|AAO58111.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 204

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 52/201 (25%), Gaps = 30/201 (14%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M     + D+ET G       R  + A V +  Q   +E  +                  
Sbjct: 1   MLERVAVIDFETTGISPNPGCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEG 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI+          E      +  F     +  +  +N  FD  +      R       
Sbjct: 57  LTGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSRIQR---- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178
                           +   +F+   +       GA + KL  L     +     AH A 
Sbjct: 109 ----------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAI 152

Query: 179 ADVYATLALVWLIREKKPKLF 199
           AD      L   +  +     
Sbjct: 153 ADAEMAANLTAYLTNELRNTH 173


>gi|37524935|ref|NP_928279.1| DNA polymerase III subunit epsilon [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784361|emb|CAE13238.1| DNA polymerase III epsilon chain [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 248

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 57/199 (28%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   VVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYIQPDRLVDPEAFEV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +      +  A+ +    +F       I   +N  FD  +    F +   D    
Sbjct: 66  HGISDEFLQDKPL-FADIADEFIEFIRGAELII---HNAPFDIGFIDYEFGKLNRDIPPT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +     D L + R ++                    L  L     I++     H A 
Sbjct: 122 --ADFCKITDSLQLARGLFPG--------------KRNNLDALCDRYDIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +  ++   +  
Sbjct: 166 LDAEILSDVYLIMTGGQTS 184


>gi|283770528|ref|ZP_06343420.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus
           H19]
 gi|283460675|gb|EFC07765.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus
           H19]
          Length = 897

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|27365234|ref|NP_760762.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|37680713|ref|NP_935322.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|320155618|ref|YP_004187997.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27361381|gb|AAO10289.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus CMCP6]
 gi|37199462|dbj|BAC95293.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|319930930|gb|ADV85794.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 243

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 61/203 (30%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           +  V+ D ET G +          R  +   V +    +       F      D    P+
Sbjct: 10  DRIVVLDTETTGMNREGGPHYMGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQPD 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT Q  +       E+ +   +F        +  +N  FD  +    F +   D
Sbjct: 67  AIDVHGITDQFLVDKP----EYRQVHQEFLEFIKGAELVAHNAPFDVGFMDYEFGK--LD 120

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
           +     D+     D L + + I+                    L  L    GI+  H   
Sbjct: 121 AAIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|325852036|ref|ZP_08171119.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
 gi|325484592|gb|EGC87508.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 29/218 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAV 58
            +++D ET G DV  D   + A +R+ R  E +      + +     LP      +P   
Sbjct: 514 IIVFDTETTGLDVFTDDIIEIAAMRI-RGGEIVGEPLDLYIETGKPILPKLGDKENPMYA 572

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
                  + A  + +  AE    + +F +   T  I  +N  +D     N   R      
Sbjct: 573 IYH---EKMAAGELLAPAEA---LCRFLAYIGTYPILGHNASYDYNILDNCLRR---YCN 623

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                +GN  +D L ++R +                  S+KL+ L     +   N+H A 
Sbjct: 624 DTMQAHGNRCFDSLKLIRLLAPSLH-------------SYKLESLLETFRLTGQNSHQAI 670

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
            DV AT++LV L  EK          +    +++   +
Sbjct: 671 DDVGATVSLVRLCAEKARTKQAQQLAFIRHPKVQPFAN 708


>gi|309789846|ref|ZP_07684425.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
 gi|308228150|gb|EFO81799.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
          Length = 230

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 15/207 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G +   D       V ++     +        +P +    D  ++ I GIT
Sbjct: 34  YSVLDIETSGLNHKRDALLAIGLVEIEEGRIHLNRHWYTLVRPPEGLEVDASSIRIHGIT 93

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +     +  A+    + +  +     ++  +  + D  +               +   
Sbjct: 94  RAELEDAPL--ADVV--LPELLARLAGRVMVVHVAQVDVSFLNQAM---------RTRWG 140

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF--KLQDLALANGIEHVNAHDAKADVY 182
                 ++D  R   +         S          +L+ LA   G+     H+A  D  
Sbjct: 141 AKLVGPIIDTARIAMSLHETAKILGSVQPDMPMPAIQLRALATRFGLPSYGEHNALNDAL 200

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKN 209
            T  L      +   +         K 
Sbjct: 201 TTAQLFLAQATRLEGMGRPTLRGLMKA 227


>gi|282921701|ref|ZP_06329418.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9765]
 gi|282593963|gb|EFB98952.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9765]
          Length = 897

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|254448791|ref|ZP_05062248.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
           HTCC5015]
 gi|198261632|gb|EDY85920.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
           HTCC5015]
          Length = 239

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 49/193 (25%), Gaps = 26/193 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G D     R  +   V +                   D   D  A+ +  IT
Sbjct: 4   VVLDTETTGLDPKQGHRIIEIGCVEL-ENRRLTG--NKLHMYLQPDREIDDGAIEVHQIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +           F   + +F        +  +N  FD  +  +    N  D       +
Sbjct: 61  NEFLADKPR----FGDVVDEFLDFVKGSELVIHNAAFDVGFIDSEL--NLLDRNLGQTKD 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADVY 182
                D L + R ++                    L  L         H   H A  D  
Sbjct: 115 YCGVLDTLAMARKMHPG--------------KRNDLDSLCKRYDINNSHRTLHGALLDAE 160

Query: 183 ATLALVWLIREKK 195
               +  ++   +
Sbjct: 161 ILADVYLMMTGGQ 173


>gi|328950488|ref|YP_004367823.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450812|gb|AEB11713.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis
           DSM 14884]
          Length = 248

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 51/198 (25%), Gaps = 29/198 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G     D   + A +RV+           +           P    +TGI  
Sbjct: 77  VVLDLETTGLSPERDEIIEVALIRVEG-----ARRLEYSRLVNPGRPIPPRITRLTGIRS 131

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      +    + +   +     +   N  FD  + R  F +        S    
Sbjct: 132 GDVRDQP----DVYTVLEEVVPLLEGATLVIQNAPFDLGFLRPRFAKL-------SVTIR 180

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           N   D +   R                 G     L  L     +   + H A  D  ATL
Sbjct: 181 NEVIDTVQWARRA-------------LPGMRRRSLDHLIEVFEVPKRSRHRAFEDAEATL 227

Query: 186 ALVWLIREKKPKLFEYLY 203
           A+ + +            
Sbjct: 228 AVAYELYYMLTAGKARAL 245


>gi|170726953|ref|YP_001760979.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908]
 gi|169812300|gb|ACA86884.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908]
          Length = 242

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +I D ET G +          R  +   V V             +       + D EA+ 
Sbjct: 11  IILDTETTGMNQGAGAIFLGHRIIEIGCVEV-INRRLTGRHYHEY--INPQQIIDEEAIE 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +         AE ++   +F    +   I  +N  FD  +  + F  +      
Sbjct: 68  VHGITNEFVAHKPK-FAEVAQSFIEFI---DGAEIVAHNANFDVSFMDHEF--SLLQPVG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
               +     D L++ + ++    +               L  L    GI++   + H A
Sbjct: 122 PKTADICPILDTLEIAKFLHPGQKN--------------NLDALCKRYGIDNSRRDLHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  ++   + K 
Sbjct: 168 LLDAEILADVYLMMTGGQTKF 188


>gi|313498009|gb|ADR59375.1| DnaQ [Pseudomonas putida BIRD-1]
          Length = 252

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 55/201 (27%), Gaps = 31/201 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58
             FVI D ET G  V    R  +   V      E I        F      D   D  A+
Sbjct: 7   KRFVILDTETTGMPVGEGHRIIEIGCV------EVIGRRLTGRHFHVYLQPDRESDEGAI 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT    +       + +    QF        +  +N  FD  +  N F        
Sbjct: 61  NVHGITDAFLVGKPR-FGDVAEEFFQFIQ---GATLVIHNAAFDVGFINNEFALLGQQDR 116

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHD 176
                +  +  D L + R+ +    +               L  L     I++     H 
Sbjct: 117 ADISQH-CTILDTLLLARSRHPGQRN--------------SLDALCKRYDIDNSGRELHG 161

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D      +   +   +  
Sbjct: 162 ALLDSELLADVYLAMTGGQTS 182


>gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
           NRL30031/H210]
 gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
           NRL30031/H210]
          Length = 463

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +   DR  + A VR      +      +                +TGI  
Sbjct: 22  VVVDLETTGGNFYQDRITEVALVRF-----EQGRATHYEQLVNPCRSIPEFVARLTGIHD 76

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +      V  A+ +  +          ++  +N RFD  + R+ F R   D         
Sbjct: 77  ETVKNAPV-FADIAADLLPLLQ---GAVVVAHNSRFDYTFLRHEFARIHTDFAA------ 126

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L  ++      P+  +            L  +    GI+  N H A  DV A  
Sbjct: 127 ----PSLCTVQLSRRLYPEFYK----------HSLDSIIERTGIQTANRHRAMTDVAALC 172

Query: 186 ALVW-LIREKKPKLFEYLYD 204
             +   + EK  + ++    
Sbjct: 173 DYLELSLAEKNHQQWDEHVR 192


>gi|26990834|ref|NP_746259.1| DNA polymerase III subunit epsilon [Pseudomonas putida KT2440]
 gi|24985842|gb|AAN69723.1|AE016608_9 DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
          Length = 252

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 55/201 (27%), Gaps = 31/201 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58
             FVI D ET G  V    R  +   V      E I        F      D   D  A+
Sbjct: 7   KRFVILDTETTGMPVGEGHRIIEIGCV------EVIGRRLTGRHFHVYLQPDRESDEGAI 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT    +       + +    QF        +  +N  FD  +  N F        
Sbjct: 61  NVHGITDAFLVGKPR-FGDVAEEFFQFIQ---GATLVIHNAAFDVGFINNEFALLGQQDR 116

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHD 176
                +  +  D L + R+ +    +               L  L     I++     H 
Sbjct: 117 ADISQH-CTILDTLLLARSRHPGQRN--------------SLDALCKRYDIDNSGRELHG 161

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D      +   +   +  
Sbjct: 162 ALLDSELLADVYLAMTGGQTS 182


>gi|148546962|ref|YP_001267064.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
 gi|148511020|gb|ABQ77880.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
          Length = 252

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 55/201 (27%), Gaps = 31/201 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58
             FVI D ET G  V    R  +   V      E I        F      D   D  A+
Sbjct: 7   KRFVILDTETTGMPVGEGHRIIEIGCV------EVIGRRLTGRHFHVYLQPDRESDEGAI 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT    +       + +    QF        +  +N  FD  +  N F        
Sbjct: 61  NVHGITDAFLVGKPR-FGDVAEEFFQFIQ---GATLVIHNAAFDVGFINNEFALLGQQDR 116

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHD 176
                +  +  D L + R+ +    +               L  L     I++     H 
Sbjct: 117 ADISQH-CTILDTLLLARSRHPGQRN--------------SLDALCKRYDIDNSGRELHG 161

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D      +   +   +  
Sbjct: 162 ALLDSELLADVYLAMTGGQTS 182


>gi|156979774|ref|YP_001442033.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|156721909|dbj|BAF78326.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus Mu3]
          Length = 897

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAQEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|330967688|gb|EGH67948.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 203

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 2   TNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G   +   R  + A V +  Q   +E  +                  +
Sbjct: 1   MERVAVIDFETTGISPSPGCRATEIA-VVIMEQGRIVERFQSLM---NAGVRIPAFIEGL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +  F     +  +  +N  FD  +      R        
Sbjct: 57  TGISNNMIRTAPSAER-VMGDVADFV---GSTPLVAHNASFDQKFWDYELSRIQR----- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                          +   +F+   +       GA + KL  L     +     AH A A
Sbjct: 108 ---------------KREQSFACSMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      L   +  +  K  
Sbjct: 153 DAEMAANLTAYLTNELRKTH 172


>gi|307243879|ref|ZP_07526004.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678]
 gi|306492701|gb|EFM64729.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678]
          Length = 172

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 28/185 (15%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +V+ D ET G      D   +      + + ++I        KP   ++P      IT I
Sbjct: 8   YVVVDLETTGLSPFNGDEIIEIG--VTEIKGDRIYRNYSRLVKPN-GFIPSV-ITEITNI 63

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +   +      +F        I  +N +FD  +      +   D       
Sbjct: 64  TNDMVQDA-LPLEDVLPNFRKFI---GDRTIIAHNAKFDIGFLNYYLEKMNLDPI----- 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +     +++++    +               + KLQ      GI + NAH A +D  A
Sbjct: 115 --DKYICTMEMLKKNKEYKG------------KNKKLQTACDYYGILNENAHRADSDTLA 160

Query: 184 TLALV 188
           T  L 
Sbjct: 161 TAKLF 165


>gi|257430810|ref|ZP_05607192.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257278938|gb|EEV09557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 68-397]
          Length = 905

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + +  I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAEEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1]
 gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1]
          Length = 234

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 27/169 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G + A  DR  +   V       ++E+   F C          EA  + G++
Sbjct: 4   IVFDTETTGLNPATGDRLVEIGCV---ELVNRVETGNSFHCYFNPQRSMPFEAEQVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F+ ++ +  +      +  +N  FD  +                   
Sbjct: 61  ERFLSDKPL----FADKVEELLAFIGDAPLVAHNASFDFGFLNWELGACGRSIVDMGRM- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                D L + R ++  +                 L  L    GI+  +
Sbjct: 116 ----VDTLQIARKMHPGA--------------KHSLDALCSRYGIDRSH 146


>gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 253

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 61/209 (29%), Gaps = 31/209 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D L DP+A+ +
Sbjct: 8   IVLDTETTGMNQIGAHYEGHCIIEIGAV---EMINRKYTGNNFHIYIKPDRLVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +            ++   ++       I   +N  FD  +    F +   D    
Sbjct: 65  HGITDEMLADKP-DFKTIAQDFIEYIRGAELLI---HNAPFDVGFMDYEFRKLGLDIKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --TDICLVTDTLQMARQMYPG--------------KRNSLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRN 207
            D      +   +   +  LF+  +   +
Sbjct: 164 LDAEILADVYLSMTGGQTSLFDEEHADSS 192


>gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 1429

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 26/194 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T   V +D ET G + + D   + A       ++ IE+   F           P  V I 
Sbjct: 761 TYRIVFFDIETTGLNPSTDAIVEVAM------FDPIEN-TTFHTLVNPQRSITPRTVGIH 813

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFYRN 113
            IT         V+   ++ I Q+  +            ++G+N    D+   R     +
Sbjct: 814 HITNAMVRDAPTVDV-VAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECH 872

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS------FKLQDLALAN 167
             +       +G    D L ++ A  +     ++    +              + +   N
Sbjct: 873 APEC----QLDGILFCDSLALLNAHRSDLRWRMRIRRANQPLMDALASSLSLSRLITALN 928

Query: 168 GIEHVNAHDAKADV 181
                + H A  D 
Sbjct: 929 VRPEGDLHRADTDT 942


>gi|291561902|emb|CBL40706.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SS3/4]
          Length = 247

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 63/234 (26%), Gaps = 28/234 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M N +V  D ET G     ++  +   V+V    E  ++                  V +
Sbjct: 5   MINSYVALDLETTGIGARHEKITEIGMVKV-IDGETTDTYHT---MVNPHREIPKRIVEL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT         +E E    +  F        +  + I FD  +               
Sbjct: 61  TGITDDMVKDAPGIE-EILDEVLAFTED---LPLLGHQIIFDYGFLVQAA-------VNQ 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + R                 G     L        +    AH A +D
Sbjct: 110 KRKFEKYGVDTLKLCR-------------YLMPGEEKKNLSAACAYFEVTQDTAHRALSD 156

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
            YA   L   ++++  K    L+  +      K     +     H+  +    R
Sbjct: 157 AYAAHNLYQELKKRFGKERPELFTAKMLQYKAKKERTASKRQKEHLQDLLKYHR 210


>gi|170739343|ref|YP_001767998.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46]
 gi|168193617|gb|ACA15564.1| DNA polymerase III, epsilon subunit [Methylobacterium sp. 4-46]
          Length = 238

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 60/231 (25%), Gaps = 25/231 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G D   DR  +  G+        I +   F             A+ + G+  
Sbjct: 5   IVLDTETTGTDAKTDRLVEIGGI---ELLNHIPTGREFHRYINPQRPVSQGALAVHGLAD 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                       F+  +  F           +N  FD  +    + R           + 
Sbjct: 62  AFLADKPP----FAAILPAFLDFCGDATFVIHNAAFDVGFLNAEYARLG--DAAPPAIDL 115

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183
               D L + R  +                 +  L  L    GI++     H A  D   
Sbjct: 116 AGVVDTLALARRKHP--------------NAANNLDALCARYGIDNSRRTKHGALLDAQI 161

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
              +   +   K        D  +  ++  L       P    S +  A R
Sbjct: 162 LAEVYIELLGGKQTSLGLTLDVASTVRVATLGGPAAHVPRAVRSRLTQAER 212


>gi|167034708|ref|YP_001669939.1| DNA polymerase III subunit epsilon [Pseudomonas putida GB-1]
 gi|166861196|gb|ABY99603.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 252

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 31/201 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58
             FVI D ET G  V    R  +   V      E I        F      D   D  A+
Sbjct: 7   KRFVILDTETTGMPVGEGHRIIEIGCV------EVIGRRLTGRHFHVYLQPDRESDEGAI 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT    +       + +    +F        +  +N  FD  +  N F        
Sbjct: 61  NVHGITDAFLVGKPR-FGDVAEEFFEFIQ---GATLVIHNAAFDVGFINNEFALIGQQDR 116

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHD 176
                +  +  D L + R+ +    +               L  L     I++     H 
Sbjct: 117 ADVSQH-CTILDTLLLARSRHPGQRN--------------SLDALCKRYDIDNSGRELHG 161

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D      +   +   +  
Sbjct: 162 ALLDSELLADVYLAMTGGQTS 182


>gi|319638605|ref|ZP_07993367.1| DNA polymerase III subunit [Neisseria mucosa C102]
 gi|317400354|gb|EFV81013.1| DNA polymerase III subunit [Neisseria mucosa C102]
          Length = 463

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +   DR  + A VR      +      +                +TGI  
Sbjct: 22  VVVDLETTGGNFYQDRITEVALVRF-----EQGRATHYEQLVNPCRSIPEFVARLTGIHD 76

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +      V  A+ +  +          ++  +N RFD  + R+ F R   D         
Sbjct: 77  ETVKNAPV-FADIAADLLPLLQ---GAVVVAHNSRFDYTFLRHEFARIHTDFAA------ 126

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L  ++      P+  +            L  +    GI+  N H A  DV A  
Sbjct: 127 ----PSLCTVQLSRRLYPEFYK----------HSLDSIIERTGIQTANRHRAMTDVVALC 172

Query: 186 ALVW-LIREKKPKLFEYLYD 204
             +   + EK  + ++    
Sbjct: 173 DYLELSLTEKNHQQWDEHVR 192


>gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
 gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
          Length = 900

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 57/191 (29%), Gaps = 27/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G  +  D   Q   +      + I++          D    P    +T I
Sbjct: 5   TYAVVDLETTGNQLDYDEIIQIG-ITFVSNHKIIDTYHS---MIRTDLEIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      E +  I+        CI   +NI FD  + +N F             
Sbjct: 61  EEDMLAQAPY-FNEVAEDIYDQIKD---CIFVAHNISFDLNFIKNAFNNC---------- 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    D+             +        S++L +LA A+ I    AH A  D   
Sbjct: 107 ---------DIQFKPKKVMDTLELFKIAFPTDKSYQLSELAQAHDIPLDKAHRADEDATT 157

Query: 184 TLALVWLIREK 194
           T  L+    +K
Sbjct: 158 TAKLMIKAFKK 168


>gi|49082166|gb|AAT50483.1| PA1816 [synthetic construct]
          Length = 247

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 53/195 (27%), Gaps = 25/195 (12%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G  V    R  +   V +            F      D   D  A+ + GIT
Sbjct: 4   VVLDTETTGMPVTDGHRIIEIGCVEL-EGRRLTGRH--FHVYLQPDREVDEGAIAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E +    +F       I   +N  FD  +  N  +       R     
Sbjct: 61  NEYLKDKPR-FREVANDFFEFIRGAQLII---HNAAFDIGFINNE-FALLGQQDRSDVTE 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             S  D L + R  +    +               L  L    G+++     H A  D  
Sbjct: 116 YCSVLDTLLMARERHPGQRN--------------NLDALCKRYGVDNSGRDLHGALLDAE 161

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 162 ILADVYLAMTGGQTS 176


>gi|15597013|ref|NP_250507.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1]
 gi|107101248|ref|ZP_01365166.1| hypothetical protein PaerPA_01002281 [Pseudomonas aeruginosa PACS2]
 gi|218892230|ref|YP_002441097.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58]
 gi|254234910|ref|ZP_04928233.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719]
 gi|296389793|ref|ZP_06879268.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1]
 gi|313110514|ref|ZP_07796399.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016]
 gi|9947801|gb|AAG05205.1|AE004608_4 DNA polymerase III, epsilon chain [Pseudomonas aeruginosa PAO1]
 gi|7229492|gb|AAF42851.1| mismatch repair protein MutD [Pseudomonas aeruginosa PAO1]
 gi|126166841|gb|EAZ52352.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719]
 gi|218772456|emb|CAW28238.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa LESB58]
 gi|310882901|gb|EFQ41495.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016]
          Length = 246

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 53/195 (27%), Gaps = 25/195 (12%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G  V    R  +   V +            F      D   D  A+ + GIT
Sbjct: 4   VVLDTETTGMPVTDGHRIIEIGCVEL-EGRRLTGRH--FHVYLQPDREVDEGAIAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E +    +F       I   +N  FD  +  N  +       R     
Sbjct: 61  NEYLKDKPR-FREVANDFFEFIRGAQLII---HNAAFDIGFINNE-FALLGQQDRSDVTE 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             S  D L + R  +    +               L  L    G+++     H A  D  
Sbjct: 116 YCSVLDTLLMARERHPGQRN--------------NLDALCKRYGVDNSGRDLHGALLDAE 161

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 162 ILADVYLAMTGGQTS 176


>gi|49483644|ref|YP_040868.1| hypothetical protein SAR1466 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425521|ref|ZP_05601946.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428180|ref|ZP_05604578.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257433568|ref|ZP_05609926.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436410|ref|ZP_05612457.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282904038|ref|ZP_06311926.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905803|ref|ZP_06313658.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908773|ref|ZP_06316591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911034|ref|ZP_06318836.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914246|ref|ZP_06322033.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M899]
 gi|282919169|ref|ZP_06326904.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924353|ref|ZP_06332027.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C101]
 gi|283958220|ref|ZP_06375671.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293501272|ref|ZP_06667123.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510233|ref|ZP_06668941.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M809]
 gi|293526828|ref|ZP_06671512.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427965|ref|ZP_06820597.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297591065|ref|ZP_06949703.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|81828017|sp|Q6GGV4|DING_STAAR RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|49241773|emb|CAG40464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271978|gb|EEV04116.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275021|gb|EEV06508.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257281661|gb|EEV11798.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284692|gb|EEV14812.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282313740|gb|EFB44133.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316979|gb|EFB47353.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282322314|gb|EFB52638.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324729|gb|EFB55039.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327037|gb|EFB57332.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331095|gb|EFB60609.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595656|gb|EFC00620.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790369|gb|EFC29186.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920386|gb|EFD97450.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291096277|gb|EFE26538.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467177|gb|EFF09695.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M809]
 gi|295128323|gb|EFG57957.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297575951|gb|EFH94667.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438140|gb|ADQ77211.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195353|gb|EFU25740.1| hypothetical protein CGSSa00_06780 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 897

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + +  I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAEEIYDKIKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|114769767|ref|ZP_01447377.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [alpha proteobacterium HTCC2255]
 gi|114549472|gb|EAU52354.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [alpha proteobacterium HTCC2255]
          Length = 230

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 29/206 (14%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G D  A DR  +   V +++           +  P  D    P A  + G++
Sbjct: 4   IVWDTETTGFDPFAGDRIVEIGAVELNQHL-PTGRVYHQYINPERDM--PPGAFEVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V    FS     F        +  +N +FD  +               +   
Sbjct: 61  IDFLKDFPV----FSNIARDFIDFVGDATLIAHNAKFDMKFINAELKNANLPQVPLNQS- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                D L++ R  +  + +               L  L     I++     H A  D  
Sbjct: 116 ----LDTLEIARKKFPGAQN--------------SLDALCRRFNIDNSSRQKHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208
               +   +   +   F      ++K
Sbjct: 158 ILAEVYLELVGGRQPDFSLSLVGQSK 183


>gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
          Length = 247

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 53/203 (26%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              V+ D ET G +          R  +   V +    +       F      D     E
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRDIQLE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +          E+     +F        +  +N  FD  +    F      
Sbjct: 67  AIEVHGITDEFLKDKP----EYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFA----- 117

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                   G +     D  +     +     +P          L  L    GI+  H   
Sbjct: 118 ------KLGGAIGKTSDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
 gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
          Length = 611

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 28/190 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     DR    A V +    E+                P P  V + G+T ++
Sbjct: 23  VDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTL---VDPGCDPGP--VDVHGLTRER 77

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                    + + R+          ++  +N +FD  +  + F R               
Sbjct: 78  LSGAPA-FDQIAGRLGAMLQDR---VLVAHNAQFDYDFLAHEFARARLYLPVT------R 127

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
           R   L + R +             D      KL  LA   G+    AHDA  D      +
Sbjct: 128 RLCTLALNRQV-------------DPPTRDMKLDSLAAHYGVPRTRAHDALDDTRVLAGI 174

Query: 188 VWLIREKKPK 197
                 +  +
Sbjct: 175 FRATLREAAR 184


>gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
 gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
          Length = 900

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 58/191 (30%), Gaps = 27/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + I D ET G  +  D   Q   +   R  + I++          D    P    +T I
Sbjct: 5   TYAIVDLETTGNQLDYDEIIQIG-ITFVRNHKIIDTYHS---MIRTDLEIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      E +  I+        CI   +NI FD  + +N F             
Sbjct: 61  EEDMLAQAPY-FNEVAEDIYDQIKD---CIFVAHNISFDLNFIKNAFNNC---------- 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    D+             +        S++L +LA A+ I    AH A  D   
Sbjct: 107 ---------DIQFKPKKVMDTLELFKIAFPTDKSYQLSELAQAHDIPLDKAHRADEDATT 157

Query: 184 TLALVWLIREK 194
           T  L+    +K
Sbjct: 158 TAKLMIKAFKK 168


>gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 203

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 32/196 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61
           ++ D ET G +     R  +   V      E I+       F      D   D  A+ + 
Sbjct: 4   IVLDTETTGLEPQQGHRIIEIGCV------EMIDRRLSGNNFHQYLQPDREIDAGAIEVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +         A+ +     +       I   +N  FD  +  +       DS    
Sbjct: 58  GITNEFLADKPR-FADLAADFLDYIRGAELII---HNAPFDVGFLNHELQLMGADSPPIG 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                +  D L + + ++    +               L  L     +++     H A  
Sbjct: 114 EL--CAVIDTLVMAKKMHPGQRN--------------SLDALCKRYDVDNTQRELHGALL 157

Query: 180 DVYATLALVWLIREKK 195
           D      +   +   +
Sbjct: 158 DAEILADVYLAMTGGQ 173


>gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581]
 gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 1455

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/480 (13%), Positives = 132/480 (27%), Gaps = 51/480 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     +   +F  V + +   + ES + F            E   IT IT
Sbjct: 401 YVVFDLETTGLSPVYNEIIEFGAVVI-QDGIQTESHQFFVKAKEP---IPTEITKITNIT 456

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +     G+   E   RI +        I+  +N +FD  +               S   
Sbjct: 457 QEMVDEQGIEATEAFYRISKIIKDS---ILVAHNAKFDFNFLAE------LFKKEASMTI 507

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                D L V R               +    S  L++++   G   +   AH A  D  
Sbjct: 508 DQPIIDTLQVSR-------------FLNPSQKSHSLKNVSKLIGLYYDETVAHRADYDAE 554

Query: 183 ATLALV--WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
               +   +L +     + +          +  L   +  +    +     A       +
Sbjct: 555 ILSKVWLNFLTQILDQDITDLKKLEYTSQSIFDLKPEKVFSKEFTIIAKNQAGIKKLYQL 614

Query: 241 APVAW-HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
             ++         ++  +L               +  +       K      I      +
Sbjct: 615 VSLSNTDYLISKPLLFYDLLEKDENLLIGSGGPESILIDNLLFSTKENAEKFIPIFDFIE 674

Query: 300 CPI------LMPIDYCKKEHFERWGIDHKRCLENLTL-------LRQQTNLRDRFKAIYN 346
            P       L+  +  KKEH            +           +R     +  F  +Y 
Sbjct: 675 LPPPEAFRHLIERNMFKKEHIFDLLKTLIAFGKKYKKPVVAIGDVRYVEPKQKIFHELYI 734

Query: 347 KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL-PELFFRYRA 405
                     +   +          I         E+L        D +L  E+  +   
Sbjct: 735 YAKRVGGGSHNLFDHREREDYKKSHIFPDKYLFTTEELINQFAFLEDEKLIKEIVIK--- 791

Query: 406 RNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
               + +S++   +  E  K  L + + +  + KL+    E    +  + +   + + ++
Sbjct: 792 --NSNLISDQIDNNI-EIIKPGLYKPKFDNSEYKLKEFVYENAHKKYGKIIPEKIEKRIK 848


>gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
           MC2 155]
          Length = 337

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 65/237 (27%), Gaps = 30/237 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + V                      P P    + G+T +
Sbjct: 26  VVDVETTGFRPGQARIVSVAALAVGDDGSV---EHSMSSLLNPGVDPGP--THVHGLTAE 80

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                      F+  + +   V     +  +N  FD  +          +    +     
Sbjct: 81  MLEGQPC----FADVVDELIEVLRGRTLVAHNAGFDYSFLAAEAELVGAELPIDT----- 131

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R               + G  + +L+ LA   G+  +  HDA  D      
Sbjct: 132 -AMCTVELAR-------------RLELGTENLRLETLAAHWGVTQMKPHDALDDALVLAQ 177

Query: 187 LVW--LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           ++   L R +  K++  L     K      +    + PL   +       +N     
Sbjct: 178 ILKPTLARARDRKVWLPLRQLTRKRWPNGHVTHDELRPLKVEASRLPCRYANPGPFV 234


>gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 1493

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/406 (12%), Positives = 109/406 (26%), Gaps = 36/406 (8%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G     +   +F  V  D        T  +              + +T ITP
Sbjct: 441 VVFDLETTGLSPEFNEIIEFGAVVFDP---VTGKTTKYDYLFKPKQPLKQFTIDLTNITP 497

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +       ++ +F  +I++        I+  +N  FD  +  ++  R  Y   + +    
Sbjct: 498 EMLEDKKNIDDDF-DKIYELIKDS---ILVAHNANFDFNFLNSLSKRLGYGDLQNT---- 549

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183
               D L + R +                  S +L  +    GI +    AH    D   
Sbjct: 550 --VIDTLTLSRLVR-------------PALKSHRLGAVCKKFGILYDEHVAHRGDYDADV 594

Query: 184 TLALVWLIREKKPKLFEYLYDYRNK-----NQLRKLIDIQNMTPLVHVSGMFGAS-RSNT 237
              L + I  +       +YD         N    +  +++    V+V        +   
Sbjct: 595 LNDLFFKIIAELKLTTPIIYDADLIKLEPENDKDNINLLRSRGAHVNVLAKNQQGLKDIF 654

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297
            L++       +    I      + +   ++                 G      + +  
Sbjct: 655 KLVSISHTDNFFNSPKIFKEKLKEFKEKNNILIGAGCVNSEVFETARIGTDEKLEEIIPF 714

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
                + P+   K    +    +H+       ++R          A  +  YT       
Sbjct: 715 YDYIEIQPLSVYKNLINDNQLEEHELIDVIKKIIRLAKKYNVMLVATSDAHYTRPELKKI 774

Query: 358 SQLYDGFFADVDRQIM-DRILRTAP-EQLSTLNLPFSDRRLPELFF 401
             +Y         +                   L  ++  L E  +
Sbjct: 775 RDVYINAKGLGGSRHPLFSFRNKNKLIDYPDQYLRTTNEMLKEFAW 820


>gi|291044082|ref|ZP_06569798.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|291012545|gb|EFE04534.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
          Length = 264

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207


>gi|268686367|ref|ZP_06153229.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035]
 gi|268626651|gb|EEZ59051.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035]
          Length = 264

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207


>gi|268684113|ref|ZP_06150975.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679]
 gi|268624397|gb|EEZ56797.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679]
          Length = 264

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207


>gi|268603417|ref|ZP_06137584.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
 gi|268587548|gb|EEZ52224.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
          Length = 264

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207


>gi|260440770|ref|ZP_05794586.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI2]
          Length = 255

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198


>gi|240127974|ref|ZP_04740635.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 255

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198


>gi|240125521|ref|ZP_04738407.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           SK-92-679]
          Length = 255

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198


>gi|240117716|ref|ZP_04731778.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
          Length = 255

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198


>gi|240016771|ref|ZP_04723311.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA6140]
 gi|240112673|ref|ZP_04727163.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
          Length = 255

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198


>gi|239998744|ref|ZP_04718668.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae 35/02]
 gi|240014337|ref|ZP_04721250.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI18]
 gi|240080968|ref|ZP_04725511.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA19]
 gi|240121900|ref|ZP_04734862.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID24-1]
 gi|240123269|ref|ZP_04736225.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|268594593|ref|ZP_06128760.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268597081|ref|ZP_06131248.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|268547982|gb|EEZ43400.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268550869|gb|EEZ45888.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 255

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198


>gi|254493534|ref|ZP_05106705.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291]
 gi|268681897|ref|ZP_06148759.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|226512574|gb|EEH61919.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291]
 gi|268622181|gb|EEZ54581.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|317164039|gb|ADV07580.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 264

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207


>gi|194098334|ref|YP_002001392.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           NCCP11945]
 gi|268598740|ref|ZP_06132907.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
 gi|193933624|gb|ACF29448.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           NCCP11945]
 gi|268582871|gb|EEZ47547.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
          Length = 264

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPKFVAELTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207


>gi|288549963|ref|ZP_05968783.2| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288316782|gb|EFC55720.1| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 246

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 59/208 (28%), Gaps = 30/208 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      A+ +    ++        +  +N  FD  +    F +   D  + 
Sbjct: 69  HGIADEFLLDKP-TFADVADEFLEYIKGAE---LVIHNASFDIGFMDYEFSKLNRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 125 N--TFCKVTDSLALARRMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYR 206
            D      +   +   +  +   + +  
Sbjct: 169 LDAQILADVYLTMTGGQTSMKFSMENES 196


>gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1]
 gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1]
          Length = 849

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 29/234 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            VI+D E+ G DV  D   Q A + +    E   S E  F KP+       ++  + G +
Sbjct: 495 IVIFDVESTGLDVTQDEVIQIAAIEL-VNGEYTRSFE-RFIKPSHSV---GDSALVHGFS 549

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                  G    E   +   F       ++  +N+++D     +   R         ++N
Sbjct: 550 DDYLNEHGEEAREVFLQFQAFVE---GALLIGHNVQYDLKIVSSQMNRLGL-----MFEN 601

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               +D LD++R +Y                 + KL  ++   G+ H   H+A  D+ AT
Sbjct: 602 SMGYYDTLDIVRRLY-------------PDLKNHKLDTVSAYVGVSHEPTHNAMDDILAT 648

Query: 185 LALVWL---IREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
             ++     +     +  + +  +   +    +  ++ +           A + 
Sbjct: 649 KDVLVKSMDLLMTHHENRKKVMKFYEPHLWGAIQRLKEIQDCFETQPPHVAMKG 702


>gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
 gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
          Length = 849

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 29/234 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            VI+D E+ G DV  D   Q A + +    E   S E  F KP+       ++  + G +
Sbjct: 495 IVIFDVESTGLDVTQDEVIQIAAIEL-VNGEYTRSFE-RFIKPSHSV---GDSALVHGFS 549

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                  G    E   +   F       ++  +N+++D     +   R         ++N
Sbjct: 550 DDYLNEHGEEAREVFLQFQAFVE---GALLIGHNVQYDLKIVSSQMNRLGL-----MFEN 601

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               +D LD++R +Y                 + KL  ++   G+ H   H+A  D+ AT
Sbjct: 602 SMGYYDTLDIVRRLY-------------PDLKNHKLDTVSAYVGVSHEPTHNAMDDILAT 648

Query: 185 LALVWL---IREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
             ++     +     +  + +  +   +    +  ++ +           A + 
Sbjct: 649 KDVLVKSMDLLMTHHENRKKVMKFYEPHLWGAIQRLKEIQDCFETQPPHVAMKG 702


>gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 829

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 28/187 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V++D ET G   A D   + A + +    +  E    +        +P  E   + G +
Sbjct: 461 LVVFDVETTGFSGAADEVIELAAIAL-EHGQIREEFNRYIRN----TVPVGETQQVHGYS 515

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                  G      +    +F       ++  +N+ FD         R   +     W  
Sbjct: 516 DDFLATHGQP---AATVFREFCEFSQGAVLVGHNLGFDIKMVTAHARRVGIEFPSPRW-- 570

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                              D +    R   + ++KL  LA +  +     H A  D   T
Sbjct: 571 ------------------EDTLNLAHRFIQSENYKLATLASSLNLSATPTHRASDDTRTT 612

Query: 185 LALVWLI 191
           +AL+  I
Sbjct: 613 VALLEAI 619


>gi|312963198|ref|ZP_07777682.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311282464|gb|EFQ61061.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 203

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 58/226 (25%), Gaps = 36/226 (15%)

Query: 2   TNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G   +   R  +   V +  +   ++  +                  +
Sbjct: 1   MERIAVIDFETTGITPSSHCRATEIG-VVILERGHIVDRYQSLM---NAGVRVPAFIEQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +++F     T  +  +N  FD  +               
Sbjct: 57  TGISNAMLRSAPPAER-VMNEVNEFV---GTTPLMAHNAAFDQKFWDYELG--------- 103

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
                      L     +  F+   +        A + KL  L     + H   AH A A
Sbjct: 104 -----------LIRRTRLQKFACSLLLARRLMPAAPNHKLGTLNSYAQLPHTGQAHRALA 152

Query: 180 DVYATLALVWLIREKKPKLF------EYLYDYRNKNQLRKLIDIQN 219
           D      L   +  +  +          L     K    K+ +   
Sbjct: 153 DAEMAANLTTHLARELRQTHGLRELSHDLLCTLQKVPAAKINEHLK 198


>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 327

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D + E  +           +  P P  V+I G+T
Sbjct: 23  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 76

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + +    +F S  +  ++  +N  FD       + R            
Sbjct: 77  SDALEGAPL-FQDIAD---EFSSRLDGRVLVAHNAVFDWQMIAREYARAGR--------- 123

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                     +  +       +          + KL+ LA   G+    AH A  D    
Sbjct: 124 ----------VAPVSQRLCTIVLSKELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVL 173

Query: 185 LALVW 189
                
Sbjct: 174 AEAFR 178


>gi|157147189|ref|YP_001454508.1| DNA polymerase III subunit epsilon [Citrobacter koseri ATCC
           BAA-895]
 gi|157084394|gb|ABV14072.1| hypothetical protein CKO_02968 [Citrobacter koseri ATCC BAA-895]
          Length = 246

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L   V    F+  +  F        +  +N  FD  +    F +      + 
Sbjct: 69  HGIADEFLLDKPV----FADVVDDFLEYIRGAELVIHNASFDIGFMDYEFAKLSRGIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           S        D L + R ++                    L  L     I++     H A 
Sbjct: 125 SEF--CKITDSLALARRMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILADVYLAMTGGQTSM 188


>gi|225376763|ref|ZP_03753984.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM
           16841]
 gi|225211389|gb|EEG93743.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM
           16841]
          Length = 241

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 60/196 (30%), Gaps = 28/196 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V+ D E  G +   DR  +    RV        +                + V +
Sbjct: 1   MLTDYVVIDLEMTGLNAKTDRILEAGAARVRGN-VVTATFSEI---INPKRKLPEKVVSL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT + A +    +A  +     FF      I+   N+ FD  + +     +       
Sbjct: 57  TGITNEMAAQGKETDATLAA----FFDFIGEDILVGQNVIFDYSFLKQWAVNH------- 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                 +  D L + R                       L  L    GIE V+AH A  D
Sbjct: 106 KRTFERNAVDTLKLARKF-------------LPQEQKKDLASLCSYFGIERVHAHRALDD 152

Query: 181 VYATLALVWLIREKKP 196
           V  T  +   +++   
Sbjct: 153 VMETQQIFEQMQKMYE 168


>gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
 gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
 gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
 gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
 gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
 gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
 gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
 gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
 gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 247

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 53/203 (26%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              V+ D ET G +          R  +   V +    +       F      D     E
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRDIQLE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +          E+     +F        +  +N  FD  +    F      
Sbjct: 67  AIEVHGITDEFLKDKP----EYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFA----- 117

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                   G +     D  +     +     +P          L  L    GI+  H   
Sbjct: 118 ------KLGGAIGKTSDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|330882898|gb|EGH17047.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 259

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 56/198 (28%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           V+ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  VVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N  +       R  
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                S  D L + R  +    +               L  L    G+++     H A  
Sbjct: 120 ITQHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|320325171|gb|EFW81239.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 259

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 56/198 (28%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           V+ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  VVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N  +       R  
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                S  D L + R  +    +               L  L    G+++     H A  
Sbjct: 120 ITQHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|332162776|ref|YP_004299353.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606882|emb|CBY28380.1| DNA polymerase III epsilon subunit [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667006|gb|ADZ43650.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861137|emb|CBX71400.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica W22703]
          Length = 260

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 61/212 (28%), Gaps = 30/212 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAYGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +    +F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGISDEFLADKP-TFADIAPEFIEFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCTITDSLLLARRLFPG--------------KRNNLDALCDRYQIDNTKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            D      +   +   +  L   +   +++N 
Sbjct: 166 LDAEILAEVYLAMTGGQTSLSFSMEGDQSQNN 197


>gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
 gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
          Length = 481

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 47/186 (25%), Gaps = 28/186 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV +D ET G     D   Q   VRV         T   +          P +  I  +T
Sbjct: 277 FVAFDTETTGLSAQTDDVVQLGAVRVLNGRVVPGETLDTYV--NPGRPIPPASTEIHRVT 334

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      ++F      F       ++  +N  FD  +      R   +        
Sbjct: 335 DGHVRGA----SDFVTVGRNFHHFARDAVLVAHNAPFDLAFLHRFADRMGVEW------- 383

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                 +LD +           Q            L  L     I   +   H A  D  
Sbjct: 384 ---THPVLDTVLLSAVVFGTTEQ----------HSLDALCDRLAITIPDNLRHTAFGDAQ 430

Query: 183 ATLALV 188
           AT   +
Sbjct: 431 ATAEAL 436


>gi|104774002|ref|YP_618982.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423083|emb|CAI97804.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125707|gb|ADY85037.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 930

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 28/203 (13%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             F + D ET G      DR  QF    V +  E +++                    +T
Sbjct: 8   ESFAVVDLETTGTRKEEGDRIIQFGCAIV-KDGEVVKTYSFMM---NPHRKIPLSVTNLT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI  +           ++ +I +        +   +N+ FD  +         +++    
Sbjct: 64  GIDQKMVAGQ-ADFKHYAPKIREILQD---TVFVAHNVNFDFPFLNYELTNAGFEAL--- 116

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +++ +  +                 S+KL+DL  +  I+H N H A +D 
Sbjct: 117 ---TCKAVDTVELAKIAF-------------PTLPSYKLRDLTASLEIKHANPHKADSDA 160

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
           Y T  L+  I +K   L +   +
Sbjct: 161 YGTAVLLLKIIDKLASLPQATLN 183


>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 334

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 55/185 (29%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D + E  +           +  P P  V+I G+T
Sbjct: 20  YAVVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 73

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + +    Q     +  ++  +N  FD       + R    +       
Sbjct: 74  SDVLAGAPL-FQDIADEFSQRL---DGRVLVAHNAMFDWSMIAREYARARRTAPTRQ--- 126

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   + + + +                  + KL+ LA   G+    AH A  D    
Sbjct: 127 ---RLCTIALAKELRL-------------PLPNHKLESLAAHFGVVQRQAHHALDDARVL 170

Query: 185 LALVW 189
                
Sbjct: 171 AEAFR 175


>gi|213964476|ref|ZP_03392676.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum
           SK46]
 gi|213952669|gb|EEB64051.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum
           SK46]
          Length = 195

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 17/189 (8%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D + D+      V V+ +   +E +     +P  + +   E+  + G+T 
Sbjct: 22  LAVDVETTGLDPSKDQLLSIGWVAVEGRDIVLEESGHLIIRPEREEVSVGESATVHGLTD 81

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                   VEAE +  + +         +  +  R +  +          D     + + 
Sbjct: 82  DMVATG--VEAEVA--VGKLLEALRGRKLLAHYARMEVGF---------LDPLCRKYFDA 128

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                + D M   Y    D I   +R+      +L  L    GI    AH A  D  A  
Sbjct: 129 RFDVPVADTMTREY----DAILRANREPVRDELRLWSLCDKYGIPRFKAHHAFNDALACA 184

Query: 186 ALVWLIREK 194
            +      +
Sbjct: 185 LVWLAQESR 193


>gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 341

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D      +           +  P P  V+I G+T
Sbjct: 19  YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTL---VNPERDPGP--VWIHGLT 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   E +  +    +     ++  +N  FD       + R    +       
Sbjct: 73  SDVLEGAPL-FPEVAEELSARLADR---VLVAHNAAFDWSMIAREYARASVVAPVEQ--- 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   + + + +                  + KL  LA   G+    AH A  D    
Sbjct: 126 ---RLCTIALAKELRL-------------PLPNHKLASLAAHFGVVQQRAHHALDDARVL 169

Query: 185 LALVW 189
                
Sbjct: 170 AEAFR 174


>gi|238913716|ref|ZP_04657553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 246

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 60/212 (28%), Gaps = 30/212 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L   V    F+  I +F        +  +N  FD  +    F     D  + 
Sbjct: 69  HGIADEFLLDKPV----FADVIDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            D      +   +   +  +   +     + Q
Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQ 200


>gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
          Length = 247

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 53/203 (26%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              V+ D ET G +          R  +   V +    +       F      D     E
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRDIQLE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +          E+     +F        +  +N  FD  +    F      
Sbjct: 67  AIEVHGITDEFLKDKP----EYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFA----- 117

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                   G +     D  +     +     +P          L  L    GI+  H   
Sbjct: 118 ------KLGGAIGKTSDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 242

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +I D ET G + A        R  +   V V             +       L D EA+ 
Sbjct: 11  IILDTETTGMNQAAGAIYLGHRIIEIGCVEV-INRRLTGRHYHEY--INPQQLIDEEAIQ 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI+ +         AE ++   +F    +   +  +N  FD  +  + F         
Sbjct: 68  VHGISNEYVANKPK-FAEIAQSFIEFI---DGAEVVAHNASFDISFMDHEFG--LLRPKG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
               +     D L + + ++    +               L  L    GI++     H A
Sbjct: 122 PKTADICGILDTLAIAKYLHPGQKN--------------NLDALCKRYGIDNSRRELHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  L+   + K 
Sbjct: 168 LLDAEILADVYLLMTGGQTKF 188


>gi|281424378|ref|ZP_06255291.1| exonuclease [Prevotella oris F0302]
 gi|281401647|gb|EFB32478.1| exonuclease [Prevotella oris F0302]
          Length = 286

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 24/198 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    V++D ET G D+  DR  Q + ++V     + E  +                  +
Sbjct: 5   LKKPLVVFDLETTGLDIVNDRIIQLSFIKVCPDGTE-ERGDHL---INPGKHIPDMVSAL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  +K         + S  + + F        G+N+ RFD       F R   D    
Sbjct: 61  TGIDDEKVKDAP-SFKQLSATLAEKFK--GCDFAGFNSNRFDVPMLAEEFLRAGIDFDF- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                           +          +   +    +   +        E   AH A  D
Sbjct: 117 ----------------SKCRLIDAQTIFHKMEKRNLAAAYEFYCGRKMEEDFEAHRADQD 160

Query: 181 VYATLALVWLIREKKPKL 198
             AT  ++    +     
Sbjct: 161 TEATYRVLLGQLDMYSAD 178


>gi|34496712|ref|NP_900927.1| DNA-directed DNA polymerase subunit epsilon [Chromobacterium
           violaceum ATCC 12472]
 gi|34102567|gb|AAQ58932.1| DNA-directed DNA polymerase, epsilon chain [Chromobacterium
           violaceum ATCC 12472]
          Length = 239

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 58/195 (29%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  +FAG+ +    +        +     +   DPEA  + GI+
Sbjct: 4   IILDTETTGLDPQQGHRIIEFAGLEM-VGRKLTGKHLHLY--IHPEREIDPEAQRVHGIS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V  A+ +  I  F       I   +N  FD  +    F +   +        
Sbjct: 61  LEFLAGKPV-FAKVAHEIADFLRDAELII---HNAPFDVGFLNAEFAKAGIEPVG---KL 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             S  D L   R ++                    L  L     I+  N   H A  D  
Sbjct: 114 CASVIDTLAEARDMFPG--------------KRNSLDALCDRFEIDRSNRTLHGALVDCE 159

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 160 LLSEVYLWMTRGQES 174


>gi|227501930|ref|ZP_03931979.1| possible exonuclease [Corynebacterium accolens ATCC 49725]
 gi|227077314|gb|EEI15277.1| possible exonuclease [Corynebacterium accolens ATCC 49725]
          Length = 1118

 Score = 81.8 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 28/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  + + D+ET G   + DR  +   V +D    ++EST     +P  D        F+ 
Sbjct: 4   SKRYAVVDFETTGFG-STDRVIEIGVVLLDHN-REVESTWETLVQPQRDIPNS----FVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITP   +   +   E +    +     N   +  +N  F+  + +  F         + 
Sbjct: 58  RITPTDVVDAPL-FGEVAGEFFELL---NGRTVVAHNAPFEVRFLQREFSNLGVAWPNY- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
              G    D   + +  Y                    L+      GI +   H A AD 
Sbjct: 113 ---GAWVVDTKRLFQQTYPGEGTT--------------LEHALEVVGITNARPHSALADA 155

Query: 182 YATLALV 188
            AT  L 
Sbjct: 156 LATAELF 162


>gi|268601098|ref|ZP_06135265.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
 gi|268585229|gb|EEZ49905.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
          Length = 264

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 32  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPQFVAELTGISDG 86

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 87  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 132

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 133 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 182

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 183 YLEYSLSAHGLEEWSRQCFRLTNPK 207


>gi|240115419|ref|ZP_04729481.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
          Length = 255

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 31/205 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G ++  DR  + A V+  +        E +                +TGI+  
Sbjct: 23  VVDLESTGGNLYEDRVTEVALVKFGQ-----GRAERYEWLVNPQKPIPQFVAELTGISDG 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  AE +  +         C++  +N RFD  + ++ F+R              
Sbjct: 78  MVADAPV-FAEIAGGLFSVLK---GCVLVAHNSRFDYTFLKHEFHRAGI----------G 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 124 FSSPALCSVQLSRRLYPQFYK----------HSLDGIIERLGIVVEDRHRAMADVSALCD 173

Query: 187 LVWLIREKK--PKLFEYLYDYRNKN 209
            +          +     +   N  
Sbjct: 174 YLEYSLSAHGLEEWSRQCFRLTNPK 198


>gi|293392715|ref|ZP_06637034.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera
           DSM 4582]
 gi|291424832|gb|EFE98042.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera
           DSM 4582]
          Length = 245

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V             + KP  D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGRHYHVYVKP--DRLVDPEAYGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +          + +    +F        +  +N  FD  +  + F     D  + 
Sbjct: 66  HGISDEFLADKP-TFDQIADEFIEFIRGGE---LVIHNAAFDIGFMDHEFRMLQQDIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCAITDSLLMARRLFPG--------------KRNNLDALCSRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAEILAEVYLAMTGGQTTM 185


>gi|257068061|ref|YP_003154316.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Brachybacterium faecium DSM 4810]
 gi|256558879|gb|ACU84726.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Brachybacterium faecium DSM 4810]
          Length = 238

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 16/194 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G +VA DR    A V       + E+   +   P +  +P+P A  + GI+ + 
Sbjct: 16  FDTETTGTNVARDRIVTVALVHSVGPGREGETVATWLIDP-EMEIPEP-AQRVHGISTEH 73

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A   G+  AE    +    +        +   NI FD     N   R    +       G
Sbjct: 74  ARAHGMKAAEALDEVAALIAEALAKEVPLVAFNISFDLAILENELTRLGLPTLA--QRLG 131

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYAT 184
           +    ++D +                        L D+    G+E     H A  DV AT
Sbjct: 132 HDIAPVIDALVIDRGV---------DRYRKGKRTLTDVLAHYGLEQDGRLHTADVDVSAT 182

Query: 185 LALVWLIREKKPKL 198
           L ++  I  K PK+
Sbjct: 183 LDVLRAITLKYPKI 196


>gi|51969194|dbj|BAD43289.1| unknown protein [Arabidopsis thaliana]
          Length = 316

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 27/224 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             ++ D ET G     +R  + A   +            F        +P   A  I GI
Sbjct: 110 TVIVSDLETTGLHRENERIIEIAAQDIAGGG-----YSTFQTLVNPGVVPITNA-HIHGI 163

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117
                 R  V    E      ++      P   +  + +N   FD  +  N F R  Y+ 
Sbjct: 164 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 223

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176
                 +     D L + R         ++         S  L+ LA         +AH 
Sbjct: 224 -----PHNWLLLDSLPLARENMKSVEPTVKL--------SSSLEALADYYSLTREGDAHR 270

Query: 177 AKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           A +DV     +   L  + K  L + +      + +   +    
Sbjct: 271 ALSDVLLLSKVFQKLTIDLKLSLSDLVLRCHTASDISAAMAKNK 314


>gi|229592763|ref|YP_002874882.1| putative exonuclease [Pseudomonas fluorescens SBW25]
 gi|229364629|emb|CAY52540.1| putative exonuclease [Pseudomonas fluorescens SBW25]
          Length = 203

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 59/226 (26%), Gaps = 36/226 (15%)

Query: 2   TNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
                + D+ET G       R  + A V +  + + ++  +                  +
Sbjct: 1   MERIAVIDFETTGITPNSHCRATEIA-VVILERGQIVDRYQSLM---NAGVRVPGFIEQL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+          E      +++F     T  +  +N  FD  +               
Sbjct: 57  TGISNAMLRSAPPAER-VMNEVNEFV---GTTPLMAHNAAFDQKFWDYELG--------- 103

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
                      L     +  F+   +        A + KL  L     + H   AH A A
Sbjct: 104 -----------LIRRTRLQKFACSLLLARRLMPTAPNHKLGTLNAFAQLPHTGKAHRAMA 152

Query: 180 DVYATLALVWLIREKKPKLF------EYLYDYRNKNQLRKLIDIQN 219
           D      L   + ++             L     K    K+ +   
Sbjct: 153 DAEMAANLTAHLAQELRSTHGLRELSHELLCTLQKVPAAKINEHLK 198


>gi|224438091|ref|ZP_03659030.1| DNA polymerase III subunit epsilon [Helicobacter cinaedi CCUG
           18818]
          Length = 233

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 57/192 (29%), Gaps = 29/192 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G         +   +RV +  + +ES E +   P            +TGI 
Sbjct: 52  FVFVDIETNGAKPQSSEIIEIGALRV-KNSQILESFESYVYAP----FVPENITELTGIR 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E  R   +F       +   +N+ FD  +      +N           
Sbjct: 107 QEDIQNAPQS-KEVLRAFREFL---GGGVFVAHNVNFDFSFLDYHLRQNGLFGLLN---- 158

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +   +D+ +              +   +  + L  L    GI    +H A AD   +
Sbjct: 159 --PKLCTIDLAK--------------KTILSKRYALSYLNEFLGINTAMSHRAYADALTS 202

Query: 185 LALVWLIREKKP 196
             +  +     P
Sbjct: 203 FRIFEIAISMLP 214


>gi|152986464|ref|YP_001348839.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7]
 gi|150961622|gb|ABR83647.1| DNA polymerase III, epsilon subunit [Pseudomonas aeruginosa PA7]
          Length = 246

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 53/195 (27%), Gaps = 25/195 (12%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G  V    R  +   V +            F      D   D  A+ + GIT
Sbjct: 4   VVLDTETTGMPVTDGHRIIEIGCVEL-EGRRLTGRH--FHVYLQPDREVDEGAIAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E +    +F       I   +N  FD  +  N  +       R     
Sbjct: 61  NEYLKDKPR-FREVANDFFEFIRGAQLII---HNAAFDIGFINNE-FALLGQQDRSDVTE 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             +  D L + R  +    +               L  L    G+++     H A  D  
Sbjct: 116 YCTVLDTLLMARERHPGQRN--------------NLDALCKRYGVDNSGRDLHGALLDAE 161

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 162 ILADVYLAMTGGQTS 176


>gi|315126186|ref|YP_004068189.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
 gi|315014700|gb|ADT68038.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
          Length = 237

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 55/198 (27%), Gaps = 26/198 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    ++ D ET G D     R  +   V +            F          + EA+ 
Sbjct: 1   MARRQIVLDTETTGIDPKQGHRIIEIGCVEL-MNRRLTG--NNFHVYINPQRSIEEEAID 57

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +      +   + ++    +        +  +N  FD  +  N F         
Sbjct: 58  VHGITNEFLRDKPL-FRDIAQEFFDYIKDAE---LVIHNAPFDIGHMDNEFA-----LLN 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
             + N +    +LD ++      P                L  L     +++     H A
Sbjct: 109 QGYQNTHDFCGVLDTLKMARDLHPGQKN-----------NLDALCRRYDVDNTKRTLHGA 157

Query: 178 KADVYATLALVWLIREKK 195
             D      +   +   +
Sbjct: 158 LLDSEILADVYLAMTGGQ 175


>gi|261416032|ref|YP_003249715.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372488|gb|ACX75233.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326359|gb|ADL25560.1| putative DnaQ family exonuclease/DinG family helicase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 905

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 68/203 (33%), Gaps = 26/203 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G D   D   + A VR     E  E+ + F  KP+      P    +TGI+
Sbjct: 7   FVALDLETTGLDFEKDEIIEVALVRF-ENGEPKENLD-FLVKPSA-VELRPFIETLTGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A  + +I  F        I  +N  FD  + +  F +           +
Sbjct: 64  KADLESA-SDFATIAGQICSFV---GDLPIVAHNAVFDSKFLKQTFTKVGISY------D 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +  WD L + R  +                 + +L  L     IE   AH A  D  A 
Sbjct: 114 SHVFWDSLTLSRIAF-------------QDVPNHRLDTLVQELNIERSRAHRALPDADAC 160

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             L     EK   +  ++YD  +
Sbjct: 161 GRLFVKALEKISTMDPWIYDALS 183


>gi|73662598|ref|YP_301379.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642618|sp|Q49XR1|DING_STAS1 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|72495113|dbj|BAE18434.1| putative ATP-dependent DNA helicase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 900

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 64/200 (32%), Gaps = 27/200 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G  +  D   Q     V    + I +          D    P    +T I 
Sbjct: 6   YAVVDLETTGNQLDYDEIIQIGITFVREN-KIIGTYHS---MIKTDLEIPPFIQALTSIE 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                +      E +  I++     + CI   +N+ FD  + +  F +            
Sbjct: 62  EDMLNQAPYFH-EIAEDIYKQI---DGCIFVAHNVAFDLNFIKKSFKQCHI------NYR 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L++             +        S++L +LA A+GI   NAH A  D   T
Sbjct: 112 PKKVMDTLEL-------------FKVAFPTDKSYQLSELAEAHGIILNNAHRADEDAATT 158

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L+ +  EK   L      
Sbjct: 159 AQLMIIAFEKFESLPLDTLK 178


>gi|147814790|emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera]
          Length = 340

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 27/210 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G   A DR  +      D    +  + +       +  +P+P    + GI
Sbjct: 135 TVIVFDTETTGLSRANDRIIEIGLQ--DLGGGENSTFQTLVN--PERIVPNP---HVHGI 187

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117
           T     R  V    +    + Q+      P   I  + +N   FD  +  N F R     
Sbjct: 188 TTYMVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCN--- 244

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
                       D L + R             +  D  +   LQ L     I     AH 
Sbjct: 245 --TEVPPNWRFMDTLPLAREFIK--------SAGSDLPSGASLQALREYFRIPLVGPAHR 294

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYR 206
             +DVY    ++ ++          L D  
Sbjct: 295 VLSDVYTLSQILQMLTFNLKVSVANLLDRS 324


>gi|21592760|gb|AAM64709.1| unknown [Arabidopsis thaliana]
          Length = 316

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 27/224 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             ++ D ET G     +R  + A   +            F        +P   A  I GI
Sbjct: 110 TVIVSDLETTGLHRKNERIIEIAAQDIAGGG-----YSTFQTLVNPGVVPITNA-HIHGI 163

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117
                 R  V    E      ++      P   +  + +N   FD  +  N F R  Y+ 
Sbjct: 164 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 223

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176
                 +     D L + R         ++         S  L+ LA         +AH 
Sbjct: 224 -----PHNWLLLDSLPLARENMKSVEPTVKL--------SSSLEALADYYSLTREGDAHR 270

Query: 177 AKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           A +DV     +   L  + K  L + +      + +   +    
Sbjct: 271 ALSDVLLLSKVFQKLTIDLKLSLSDLVLRCHTASDISAAMAKNK 314


>gi|15240411|ref|NP_198046.1| exonuclease family protein [Arabidopsis thaliana]
 gi|30690464|ref|NP_851082.1| exonuclease family protein [Arabidopsis thaliana]
 gi|30690468|ref|NP_851083.1| exonuclease family protein [Arabidopsis thaliana]
 gi|42573491|ref|NP_974842.1| exonuclease family protein [Arabidopsis thaliana]
 gi|51968684|dbj|BAD43034.1| unknown protein [Arabidopsis thaliana]
 gi|108385373|gb|ABF85778.1| At5g26940 [Arabidopsis thaliana]
 gi|332006246|gb|AED93629.1| exonuclease family protein [Arabidopsis thaliana]
 gi|332006247|gb|AED93630.1| exonuclease family protein [Arabidopsis thaliana]
 gi|332006248|gb|AED93631.1| exonuclease family protein [Arabidopsis thaliana]
 gi|332006249|gb|AED93632.1| exonuclease family protein [Arabidopsis thaliana]
          Length = 316

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 27/224 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             ++ D ET G     +R  + A   +            F        +P   A  I GI
Sbjct: 110 TVIVSDLETTGLHRKNERIIEIAAQDIAGGG-----YSTFQTLVNPGVVPITNA-HIHGI 163

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117
                 R  V    E      ++      P   +  + +N   FD  +  N F R  Y+ 
Sbjct: 164 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 223

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176
                 +     D L + R         ++         S  L+ LA         +AH 
Sbjct: 224 -----PHNWLLLDSLPLARENMKSVEPTVKL--------SSSLEALADYYSLTREGDAHR 270

Query: 177 AKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           A +DV     +   L  + K  L + +      + +   +    
Sbjct: 271 ALSDVLLLSKVFQKLTIDLKLSLSDLVLRCHTASDISAAMAKNK 314


>gi|268680225|ref|YP_003304656.1| DNA polymerase III subunit epsilon [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618256|gb|ACZ12621.1| DNA polymerase III, epsilon subunit [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 260

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 66/216 (30%), Gaps = 29/216 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F I D E  G   ALD   +   V V  + + +            D LP+   V +TGI
Sbjct: 70  KFCIVDIEANGSKPALDAIIEIGAVMV-EKGKIVGEFSSLA---KTDVLPE-SIVQLTGI 124

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++                 F       +   +N+ FD Y+  +      +        
Sbjct: 125 TLEELSFAP-SLNSVLEGFRLFIKD---AVFVAHNVNFDYYFISHSLEMAGFGPLLN--- 177

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R D +D+ R                  A  + L  LA   GI   N H A  D  A
Sbjct: 178 ---RRLDTIDLARKC--------------IEAPKYGLSALAEHLGITFENHHRALYDAKA 220

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           T  ++  +    P   + +      ++ +     + 
Sbjct: 221 TTEVLLHVFNNLPHEVQTVEQLIAFSRPQNQRKKKK 256


>gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae
           T3T1]
          Length = 253

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 31/203 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D L DP+A+ +
Sbjct: 8   IVLDTETTGMNQIGAHYEGHCIIEIGAV---EMINRKYTGNNFHIYIKPDRLVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +            ++   ++       I   +N  FD  +    F +   D    
Sbjct: 65  HGITDEMLADKP-DFKTIAQDFIEYIRGAELLI---HNAPFDVGFMDYEFRKLGLDIKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --TDICLVTDTLQMARQMYPG--------------KRNSLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
            D      +   +   +  LF+ 
Sbjct: 164 LDAEILADVYLSMTGGQTSLFDE 186


>gi|219847899|ref|YP_002462332.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
           9485]
 gi|219542158|gb|ACL23896.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
           9485]
          Length = 280

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 60/200 (30%), Gaps = 29/200 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            V +D ET G D+    R  + A +R     +              +   DP+A  + GI
Sbjct: 15  LVFFDVETTGLDLQNGHRICELAMLR-REHRQITGQINTL---INPERELDPQASQVNGI 70

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +         AE + ++ Q        +   +N+ FD+ +      R  Y        
Sbjct: 71  RAEDLQSAPR-FAELTVQVVQL---SQQAVRVAHNLPFDESFLNMELARAGYPPL----- 121

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +                  S  L  LA + G+     H A  DV  
Sbjct: 122 -TGPALDTLELARRLGI-------------RRGSLSLGALATSFGLPT-PTHRAMDDVLT 166

Query: 184 TLALVWLIREKKPKLFEYLY 203
             AL   +  K         
Sbjct: 167 LHALFDRLVAKLADYGVTTL 186


>gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309B]
 gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309A]
          Length = 289

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 77/227 (33%), Gaps = 34/227 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F+ +D ET G D   D   Q +  R      +++  +        DY+PD E   +TG
Sbjct: 6   KEFIAFDIETTGLDFHQDAVIQISAARY-VDGIEVDYFDTL---VNSDYIPD-EITKLTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  + L       E    +  +    +T ++G+N   FD  + +   Y           
Sbjct: 61  ITNDQVLNAP-TLDEVMPYLFDYL--GDTILVGHNIKSFDFPFLKAKGYN---------- 107

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +   +          +R  GA + +L  L L  GI+   +H+A  DV 
Sbjct: 108 ------------IAEGHEIYDTRYFAATRKHGAVNNQLTTLKLLFGID-AISHNALNDVR 154

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
            +  +   + + +P+          K+ L       + TP       
Sbjct: 155 ISAIVFMELLKIEPQEKSSTLK---KSSLDSFELDDDTTPFFEGMSF 198


>gi|190150601|ref|YP_001969126.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303252089|ref|ZP_07338258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|189915732|gb|ACE61984.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302649071|gb|EFL79258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 257

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 57/216 (26%), Gaps = 30/216 (13%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G   +          +   V V            F          D EA+ +
Sbjct: 10  VVLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVDEEAIKV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +      V  AE +    +F       I   +N  FD  +    F        + 
Sbjct: 67  HGITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 S  D L V R +Y                    L  L    GI++     H A 
Sbjct: 123 --AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
            D      +  ++   +  L            +  L
Sbjct: 167 LDAEILADVFLMMTGGQLALLGEEDATATHENVADL 202


>gi|188580742|ref|YP_001924187.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001]
 gi|179344240|gb|ACB79652.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001]
          Length = 236

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 49/186 (26%), Gaps = 26/186 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +     +      +             A  + GI+
Sbjct: 5   IVLDTETTGTDAKNGDRLIEIGCVEL-INHVQTGKF--YHQLINPQRAVSEGAFAVHGIS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V    F+  +  F +      +  +N  FD  +    F R            
Sbjct: 62  DAMLADKPV----FADVVDAFVAFCGDARLVIHNAPFDVGFLNMEFARLG--PAAPKAIP 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  + +               L  L    G++      H A  D  
Sbjct: 116 LEDVVDTLLLARRKHPGAAN--------------NLDALCNRYGVDTTRRVKHGALLDAQ 161

Query: 183 ATLALV 188
               + 
Sbjct: 162 ILAEVY 167


>gi|254240209|ref|ZP_04933531.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192]
 gi|126193587|gb|EAZ57650.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192]
          Length = 246

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 53/195 (27%), Gaps = 25/195 (12%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G  V    R  +   V +            F      D   D  A+ + GIT
Sbjct: 4   VVLDTETTGMPVTDGHRIIEIGCVEL-EGRHLTGRH--FHVYLQPDREVDEGAIAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E +    +F       I   +N  FD  +  N  +       R     
Sbjct: 61  NEYLKDKPR-FREVANDFFEFIRGAQLII---HNAAFDIGFINNE-FALLGQQDRSDVTE 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             S  D L + R  +    +               L  L    G+++     H A  D  
Sbjct: 116 YCSVLDTLLMARERHPGQRN--------------NLDALCKRYGVDNSGRDLHGALLDAE 161

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 162 ILADVYLAMTGGQTS 176


>gi|32266846|ref|NP_860878.1| DNA polymerase III subunit epsilon [Helicobacter hepaticus ATCC
           51449]
 gi|32262898|gb|AAP77944.1| DNA polymerase III [Helicobacter hepaticus ATCC 51449]
          Length = 266

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 55/199 (27%), Gaps = 29/199 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + V  D ET G      +  +   ++V +  E I+  E +      D +P+     +TGI
Sbjct: 72  NLVFVDIETNGAKPQQCQIIEIGALKV-KGGEIIDKFESYVYA---DEVPE-NITQLTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        E       F     T +   +N+ FD  +      +           
Sbjct: 127 CQADIAYAP-SIKEVLGEFRAFL---GTDVFVAHNVNFDYGFVDYHLRQCGLFGLLNP-- 180

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 I+   +   +  + L  L    GI     H A AD   
Sbjct: 181 ------------------KLCTIELAKKTILSPRYALGFLNEFLGIRTAVTHRAYADALT 222

Query: 184 TLALVWLIREKKPKLFEYL 202
           +  +  +     P   + +
Sbjct: 223 SFRVFEIASMMFPPFVKSM 241


>gi|84501202|ref|ZP_00999407.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola batsensis HTCC2597]
 gi|84390493|gb|EAQ02981.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola batsensis HTCC2597]
          Length = 230

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 56/203 (27%), Gaps = 29/203 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V     W  + + E +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFDPEQGDRIVEIGAV---ELWNHVPTGETYHVYINPERSMPQEAFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V   + +R   +F        +  +N  FD  +           +  W    
Sbjct: 61  DDFLRDKPV-FRDVARGFVEFVKDAK---LVIHNASFDMKFINAELGWLNIPAIPWDQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  SP                L  L    GI++     H A  D  
Sbjct: 116 ----IDTLAIARQRFPGSPA--------------SLDALCRRFGIDNSARTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLFEYLYDY 205
               +   +   +   F      
Sbjct: 158 ILAEVYLELIGGRQPDFALSAST 180


>gi|318057465|ref|ZP_07976188.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318076919|ref|ZP_07984251.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 244

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 61/206 (29%), Gaps = 18/206 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V      +   S                 A  + GIT ++
Sbjct: 12  FDLETTGIDVEADRIVT-ACVVQCGGGQDTASAVWLA---DPGVEIPEGAAKVHGITTEQ 67

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G    E   ++    +    +   +   N  +D         R+          + 
Sbjct: 68  ARAEGRPAPEVVEQVVAALAQVARDGVPVVAMNASYDLTLLDREARRHGVQPLVDIVGDQ 127

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D   + + +  F   G             KL+DL     +    AH A AD  A  
Sbjct: 128 LRVIDPRVLDKRVDKFRRGG------------RKLEDLCRTYSVGLDGAHSADADAIAAC 175

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQL 211
            + W I      +        ++ Q+
Sbjct: 176 RVAWRIATTHTAIGAASLGELHEQQV 201


>gi|121609336|ref|YP_997143.1| DNA polymerase III subunit epsilon [Verminephrobacter eiseniae
           EF01-2]
 gi|121553976|gb|ABM58125.1| DNA polymerase III, epsilon subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 237

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 51/194 (26%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G      DR  +   V       +  +                +A+ + GI+
Sbjct: 5   IVLDTETTGLSADSGDRIIELGCV---ELLNRKLTGNNLHLYFNPGRDSHEDALKVHGIS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    I Q+       I   +N  FD  +         + +       
Sbjct: 62  NEFLKDKPR-FAELVDDILQYLQGAELII---HNAAFDVGFLNKELELAGHPALAHCV-- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + + +Y                    L  L    G+++     H A  D  
Sbjct: 116 -ERVTDTLAMAKELYPG--------------KRNSLDALCDRLGVDNSGRTLHGALLDAE 160

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 161 LLADVYIHLTRGQK 174


>gi|283470668|emb|CAQ49879.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 897

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 62/203 (30%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V      I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-HIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + +  I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAEEIYDKIKD---CIFVAHNVDFDLNFIKKAFKNCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|258627375|ref|ZP_05722159.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
 gi|258580413|gb|EEW05378.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
          Length = 247

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 51/203 (25%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              V+ D ET G +          R  +   V +    +       F      D     E
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQLE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +          +       F        +  +N  FD  +    F      
Sbjct: 67  AIEVHGITDEFLRDKPE-YKDVHDEFLDFIKDAE---LVAHNAPFDVGFMDYEFA----- 117

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                   G S     D  +     +     +P          L  L    GI+  H   
Sbjct: 118 ------KLGGSVVKTTDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 328

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 73/279 (26%), Gaps = 30/279 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D + E  +           +  P P  V+I G+T
Sbjct: 23  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 76

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   + +       +     ++  +N  FD       + R   ++       
Sbjct: 77  SEALEGAPL-FTDIAEEFAARLADR---VLVAHNAVFDWQMIAREYARARREAP------ 126

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                        +                  + KL+ LA   G+    AH A  D    
Sbjct: 127 -------------VRQRLCTIALSKELGLPLPNHKLESLAAHFGVVQRRAHHALDDARVL 173

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
                                     L +  D           G + AS    +   P  
Sbjct: 174 AEAFR-PSLWAAAAGGVRLPLLECRPLTEWSDRPVPRQQSGGYGGYRASSWRPSRKRPAC 232

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283
            +P       G  L   MRV    D+    + L     E
Sbjct: 233 PYPNPGRYEPGKRLKQGMRVAFSGDTSTERELLEDRATE 271


>gi|209546045|ref|YP_002277935.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538902|gb|ACI58835.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 326

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 60/217 (27%), Gaps = 32/217 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           VI D ET G +   D   +   V    D      +   ++            E   +TGI
Sbjct: 75  VILDTETTGLNHRSDEIIEIGAVAFTFDDDGGIGDIVGIYGGLQQPSRPIPAEITRLTGI 134

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +     S  I          +I  +N  FD  +                  
Sbjct: 135 TDAMVEGQVIDMWSLSALIE------PADLIIAHNAGFDRPFCEA--------------- 173

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      + A  A++    +      G    KL  L    G  H   H A  D +A
Sbjct: 174 --------FSTIFAGKAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHDG-HRAVDDCHA 224

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
            L ++   +      F  LY    ++++R   +    
Sbjct: 225 LLEILDREQGDGESPFAELYRASQRSRIRIFAEHSPF 261


>gi|330889978|gb|EGH22639.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 259

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  IVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N  +       R  
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                S  D L + R  +    +               L  L    G+++     H A  
Sbjct: 120 ITLHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|323498002|ref|ZP_08103011.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323317047|gb|EGA70049.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 247

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 31/204 (15%)

Query: 2   TNHFVIYDYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
            +  ++ D ET G +          R  +   V +    +       F      D    P
Sbjct: 9   QHRIIVLDTETTGMNQEGGPHYLGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDRQIQP 65

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           EAV + GIT +  +       E+     +F        +  +N  FD  +    F     
Sbjct: 66  EAVLVHGITDEFLVDKP----EYQDVHQEFLEFIKGAELVAHNAPFDTGFMDYEFE--ML 119

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVN 173
           ++     ++     D L + + I+                    L  L    GI+  H  
Sbjct: 120 NAQIGKTEDYCKVTDTLAMAKKIFPG--------------KRNNLDILCERYGIDNSHRT 165

Query: 174 AHDAKADVYATLALVWLIREKKPK 197
            H A  D      +  L+   +  
Sbjct: 166 LHGALLDAEILADVYLLMTGGQTS 189


>gi|115522405|ref|YP_779316.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
 gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 229

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +     ++ + +++ C    +     EA  + G++
Sbjct: 4   IVLDTETTGLDPLRGDRLVEIGCVEI---LNRMPTGQIYHCYINPERDMPAEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  AE +     F +      +  +N  FD  +      R            
Sbjct: 61  AEFLSTKPL-FAEVAEEFLAFIAD---APLVIHNASFDIGFINAELARLSQPPIPR---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|153836296|ref|ZP_01988963.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
 gi|149750571|gb|EDM61316.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
          Length = 247

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 24/197 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
           FV  D+ET G +   D       V        I+  +           +   + E+V I 
Sbjct: 57  FVSVDFETTGLNAEEDAILTIGLVPF-----TIDRVQCSGSAHWIVNPNRELNEESVVIH 111

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +         +    I    +     ++ +               R F+ +   +
Sbjct: 112 GITDSEVKNAPQ-LTQILGEILDALA--GKVVLVH----------YKNIERQFFYNALLN 158

Query: 122 WDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAK 178
                 ++ ++D +   YA         W         S +L       G+     H A 
Sbjct: 159 TIGEGIQFPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLPAYQPHHAL 218

Query: 179 ADVYATLALVWLIREKK 195
            D  AT  L     +  
Sbjct: 219 TDALATAELFQAQLQYH 235


>gi|149377452|ref|ZP_01895195.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
 gi|149358293|gb|EDM46772.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
          Length = 236

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D A   R  +   V +    +       +      +   + EA+ + GIT
Sbjct: 4   IVLDTETTGIDPAEGHRIIEIGCVELME-RQITGRH--YHVYINPEREVEAEAITVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A  +    +F        +  +N  FD  +  + F R            
Sbjct: 61  NEFLADKPK-FAAIADEFFEFIKGAE---LVIHNAAFDIGFMDSEFARL---KPVRRTTE 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +    +               L  L    GI++ N   H A  D  
Sbjct: 114 HCGVVDSLAIARKKHPGQKN--------------NLDALCKRYGIDNSNRELHGALLDAE 159

Query: 183 ATLALVWLIREKKP 196
               +  L+   + 
Sbjct: 160 ILADVYLLLTGGQT 173


>gi|116049766|ref|YP_791427.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584987|gb|ABJ11002.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 246

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 53/195 (27%), Gaps = 25/195 (12%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G  V    R  +   V +            F      D   D  A+ + GIT
Sbjct: 4   VVLDTETTGMPVTDGHRIIEIGCVEL-EGRRLTGRH--FHVYLQPDREVDEGAIAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E +    +F       I   +N  FD  +  N  +       R     
Sbjct: 61  NEYLKDKPR-FREVANDFFEFIRGAQLII---HNAAFDIGFINNE-FALLGQQDRSDVSE 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             S  D L + R  +    +               L  L    G+++     H A  D  
Sbjct: 116 YCSVLDTLLMARERHPGQRN--------------NLDALCKRYGVDNSGRDLHGALLDAE 161

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 162 ILADVYLAMTGGQTS 176


>gi|302187967|ref|ZP_07264640.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae 642]
 gi|330952814|gb|EGH53074.1| DNA polymerase III subunit epsilon [Pseudomonas syringae Cit 7]
 gi|330972572|gb|EGH72638.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 259

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  IVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N  +       R  
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                S  D L + R  +    +               L  L    G+++     H A  
Sbjct: 120 ITQHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|262170796|ref|ZP_06038474.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|261891872|gb|EEY37858.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 247

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 51/203 (25%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              V+ D ET G +          R  +   V +    +       F      D     E
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQLE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +          +       F        +  +N  FD  +    F      
Sbjct: 67  AIEVHGITDEFLRDKPE-YKDVHDEFLDFIKDAE---LVAHNAPFDVGFMDYEFA----- 117

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                   G S     D  +     +     +P          L  L    GI+  H   
Sbjct: 118 ------KLGGSVVKTTDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|71733799|ref|YP_273952.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289627521|ref|ZP_06460475.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649928|ref|ZP_06481271.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486280|ref|ZP_07004343.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554352|gb|AAZ33563.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298159287|gb|EFI00345.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330868357|gb|EGH03066.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330985658|gb|EGH83761.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012696|gb|EGH92752.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 259

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  IVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N  +       R  
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                S  D L + R  +    +               L  L    G+++     H A  
Sbjct: 120 ITQHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|66045009|ref|YP_234850.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255716|gb|AAY36812.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Pseudomonas syringae pv. syringae B728a]
          Length = 259

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  IVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N  +       R  
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                S  D L + R  +    +               L  L    G+++     H A  
Sbjct: 120 ITQHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|238794443|ref|ZP_04638053.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909]
 gi|238726238|gb|EEQ17782.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909]
          Length = 259

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 61/215 (28%), Gaps = 30/215 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 14  IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +     F        +  +N  FD  +    F     D  + 
Sbjct: 71  HGISDEFLADKP-TFADITPEFLDFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 126

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 127 E--TFCTITDSLLLARRLFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 170

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            D      +   +   +  L   +   +++N   +
Sbjct: 171 LDAEILAEVYLAMTGGQTSLSFSMEGDQSQNDSSE 205


>gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
 gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
          Length = 583

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 65/223 (29%), Gaps = 28/223 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G     DR  +FA VR D           F      +   +    ++ GI
Sbjct: 382 TILVFDIETTGFSRREDRIIEFA-VR-DLMG---GKNSTFQTLINPEK--EVRNAYVHGI 434

Query: 64  TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           +     R  V    E    + Q+             + +N   FD  +    F R   + 
Sbjct: 435 SNSMLCRPDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFRRCKLEM 494

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176
                       D L + R +           S     +S  L++L     I    +AH 
Sbjct: 495 -----PGDWLFVDTLPIARQL---------VDSDGSKLSSVSLKNLRERYNIPLTGSAHR 540

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           A  DV     ++  +  +       L +   +         + 
Sbjct: 541 AMQDVTTLCYVLQKLTFELKLTVPQLLEKSFQASDLPATRAEK 583


>gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 647

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 28/190 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     DR    A V +    E+                P P  V + G+T ++
Sbjct: 19  VDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTL---VDPGCDPGP--VDVHGLTRER 73

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                    + + R+          ++  +N +FD  +  + F R               
Sbjct: 74  LSGAPA-FGQIAGRLGAMLQDR---VLVAHNAQFDYDFLAHEFARARLYLPVT------R 123

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
           R   L + R +             D      KL  LA   G+    AHDA  D      +
Sbjct: 124 RLCTLALNRQV-------------DPPTRDMKLGSLAAHYGVPRTRAHDALDDTRVLAGI 170

Query: 188 VWLIREKKPK 197
                 +  +
Sbjct: 171 FRATLREAAR 180


>gi|332288192|ref|YP_004419044.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179]
 gi|330431088|gb|AEC16147.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179]
          Length = 248

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 54/200 (27%), Gaps = 31/200 (15%)

Query: 3   NHFVIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           N  V+ D ET G           R  +   V +            F      D   DPEA
Sbjct: 6   NRIVVLDTETTGMSGTSEPQIGHRIIEIGAVEL-VNRRYTGR--NFHVYLQPDQQVDPEA 62

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V + GIT +          E ++    F        +  +N  FD  +    F       
Sbjct: 63  VAVHGITDEFLADKPR-FKEVAQEFINFIKGAE---LVIHNAPFDVAFMNQEFALQGQ-- 116

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--H 175
              + D      D L V R +Y                    L  L    GI++     H
Sbjct: 117 -ALTTDQLCKVTDSLKVARQLYPG--------------KKNSLDALCSRLGIDNSKRTLH 161

Query: 176 DAKADVYATLALVWLIREKK 195
            A  D      +   +   +
Sbjct: 162 GALLDAEILADVYLAMTGGQ 181


>gi|303233442|ref|ZP_07320110.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Atopobium vaginae PB189-T1-4]
 gi|302480450|gb|EFL43542.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Atopobium vaginae PB189-T1-4]
          Length = 539

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 57/221 (25%), Gaps = 31/221 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G   A D   Q A V+         + + F                +T I 
Sbjct: 83  LVFLDTETTGLSFADDSLTQIAAVKRRADG----TFDTFCTFVHPPKPIPAHISKLTNIY 138

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E    + QF        I  +N  FD  +          +        
Sbjct: 139 NADVAAAPKP-KEAVLALAQFV---GGAPIVAHNAAFDKTFV---------EGVLQHQTV 185

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            ++  D L + +  +                   KL+DLA+  G      H A  D  A 
Sbjct: 186 SSTWIDSLALSKIAFPSFNT-------------HKLEDLAVLFGCAR-VTHRADDDCKAL 231

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
             +   +     +L E L            +  + M   V 
Sbjct: 232 ADVWHYMMRALCQLPESLVHLFAHMHEDDGMRSEWMYAGVF 272


>gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 1482

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 38/230 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G    LD   +F  +  + +  + +  ++                 +T IT 
Sbjct: 436 VFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDIL---IKPKAKLKAFTQKLTNITE 492

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +       +E +  ++I++        I+  +N  FD  +      +  Y     +    
Sbjct: 493 KMLEDKPSIE-QAFKQINEIIKD---AILVAHNANFDFTFLSYWSEKLGYGKLENT---- 544

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183
               D L + R IY                 S +L  LA    I +    AH    D   
Sbjct: 545 --IIDTLTISRIIY-------------PDLKSHRLGSLAKRVNISYDPSIAHRGDYDADI 589

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
              +   + +          + R K ++    D   + P+ +   +    
Sbjct: 590 LADIYERMLD----------ETRKKIKIITDSDWNKIDPINYADNLNYYK 629


>gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 239

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 56/201 (27%), Gaps = 29/201 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G D    DR  +   V  V+R          F      D   D EAV + GI
Sbjct: 4   IVLDTETTGLDWRTGDRVIEIGCVELVNRSL--TGRH--FHVYINPDRGIDAEAVAVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         A        F        +  +N  FD  +                  
Sbjct: 60  TEEFLADKPR-FAGIVEAFEDFVRDAE---LVIHNANFDVGFLNCELGLLGRP------- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
               + D+L       A   D ++     +      L  L     I++ +   H A  D 
Sbjct: 109 ----KLDVLC------AGVIDTLRMAKEQNPGKKASLDALCDRYEIDNGHRTLHGALLDA 158

Query: 182 YATLALVWLIREKKPKLFEYL 202
                +   +   +  L   L
Sbjct: 159 ELLAEVYLAMTRGQESLMIAL 179


>gi|119385539|ref|YP_916595.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119375306|gb|ABL70899.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 239

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 57/195 (29%), Gaps = 28/195 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +            F      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFDPDTGDRIVEIGAVELMNHL-PTGR--TFHVYINPERPMPQEAFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE +     F       +I  +N  FD  +         + +  +S   
Sbjct: 61  DDFLRDKPK-FAEIAADFVAFIGDDAKLVI--HNASFDMKFLNAELRMVGHATMPYS--- 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L++ R+++  + +               L  L     I++ N   H A  D  
Sbjct: 115 --RAVDTLEIARSMFPGAQN--------------SLDALCRRFRIDNSNRTLHGALLDSE 158

Query: 183 ATLALVWLIREKKPK 197
               +   +R  +  
Sbjct: 159 LLAEVYLALRGGRQP 173


>gi|301166002|emb|CBW25576.1| putative DNA polymerase III PolC-type alpha subunit [Bacteriovorax
           marinus SJ]
          Length = 295

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 62/216 (28%), Gaps = 28/216 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G    +D+  + + ++V    E++   +                + I GIT
Sbjct: 20  IVALDLETTGLSPLIDKVIELSAIKVTPYGEEV--FDEL---IDPKIEIPKFTIDIHGIT 74

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                          + + +F +   +  +  +N +FD  +     ++     +      
Sbjct: 75  NDMVQGK----RTLDKVLPEFINFIGSLPLVAHNAKFDLGFIVFGMHQIGLPLHESH--- 127

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                        G+T+FKL  L     I   N H A  D  A 
Sbjct: 128 ----------------VYCSCKFSRYALRGSTNFKLSTLTTELEIPLENHHRALDDAIAC 171

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
           L +         K    + +  +  +L+      + 
Sbjct: 172 LKVYERGLRVFKKPDRKILNEGHLFKLKDFDKQDDF 207


>gi|88703294|ref|ZP_01101010.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71]
 gi|88702008|gb|EAQ99111.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71]
          Length = 240

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 26/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +V+   R  +   V +    +       F      +   D  A+ + GIT
Sbjct: 4   IVLDTETTGLEVSQGHRIIEIGCVEM-ENRQLTGRH--FHRYINPERDIDAGAIEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V  +  ++    F       I   +N  FD  +  +                
Sbjct: 61  ATFLADKPV-FSAVAKDFIDFVDGAELII---HNAPFDIGFLDSEL-------------- 102

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
             SRWD   +  A      D +             L  L    G+++     H A  D  
Sbjct: 103 --SRWDASALPLAQRCDITDTLIMARSRHPGQRNSLDALCGRYGVDNSSRELHGALLDAE 160

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 161 ILADVYLTMTGGQT 174


>gi|254229568|ref|ZP_04922981.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25]
 gi|151937941|gb|EDN56786.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25]
          Length = 226

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 59/194 (30%), Gaps = 16/194 (8%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T + +I D ET G         +F  +  +     ++                 +A  I 
Sbjct: 27  TENAIIIDTETTGLGAD-AEIVEFTAICANSGEVIVDEL------VKPTCSIPADATAIH 79

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +           FS R     +     II YN+  FD         ++   +Y  S
Sbjct: 80  GITNEDVKDAPDFHLMFSNRFLPLLN--GRPIIIYNS-DFDTRLIIQSLDKHCNAAYVQS 136

Query: 122 WDNGNSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAK 178
             +   ++ +    M     F      W    +      L +      ++  +  AH A 
Sbjct: 137 VHDLFFKFCVPQCAMLWYAEFYG---VWNEYHEDYKWQSLTNACAQQHVDVSDLIAHRAL 193

Query: 179 ADVYATLALVWLIR 192
           AD   T  L+  + 
Sbjct: 194 ADCEMTRRLIHAVN 207


>gi|16124261|ref|NP_418825.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|221232944|ref|YP_002515380.1| DNA polymerase III subunit epsilon [Caulobacter crescentus NA1000]
 gi|13421091|gb|AAK21993.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|220962116|gb|ACL93472.1| DNA polymerase III, epsilon chain [Caulobacter crescentus NA1000]
          Length = 237

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 53/190 (27%), Gaps = 29/190 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D    DR  +   + V   +     +   +C P  D     EA  + G++
Sbjct: 5   IILDTETTGFDPKTGDRLVEIGCIEV-VDFMPTGRSFHEYCDPLRDM--PAEAEKVHGLS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E + R   F       ++  +N  FD  +      +            
Sbjct: 62  SAFLTGKPKFH-EIADRFLDFV---GDSVVVAHNAAFDRQFVNFELEKCGKAPIHEE--- 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                      R +   +    ++P          L  L     I     + H A  D +
Sbjct: 115 -----------RWVDTLAMAKKRFPGMY-----NSLDALCKRFKISLESRDKHGALIDAH 158

Query: 183 ATLALVWLIR 192
               +   ++
Sbjct: 159 LLAEVYLELQ 168


>gi|222109241|ref|YP_002551505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY]
 gi|221728685|gb|ACM31505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY]
          Length = 218

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 46/174 (26%), Gaps = 30/174 (17%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             + D+ET G   A   R  + A V +      ++  +             P    +TGI
Sbjct: 6   IAVIDFETTGMMPAQGARATEVAIVLM-EGGRVVDRYQSLM---RTGVRIPPFITQLTGI 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            + +  + +         +  +N  FD  + +                
Sbjct: 62  TNAMVEAAP----DAAAVMREAARFVGDAPMVAHNAAFDRKFWQAEMQHAG--------- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
                      + A + F+   +        A S  L  L    G+     AH 
Sbjct: 109 -----------LAAPHPFACTVLLSRRVYPDAPSHSLGRLTDHLGLPRAGRAHR 151


>gi|163732957|ref|ZP_02140401.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149]
 gi|161393492|gb|EDQ17817.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149]
          Length = 228

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +      + + + +      + +   EA  + G+ 
Sbjct: 4   IVLDTETTGFDPESGDRIVEIGAVELMGH---VATGKTYHQYINPERMMPDEAFQVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE  +    F        +  +N  FD  +              W    
Sbjct: 61  DEFLRDKPK-FAEVGQAFLDFIGDAK---LVIHNAAFDIKFLNAELKWMNLPQIPWEQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  SP                L  L    GI++ +   H A  D  
Sbjct: 116 ----IDTLAIARKRFPGSPA--------------SLDALCRRFGIDNASRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 158 ILAEVYLELIGGRQPDF 174


>gi|221195203|ref|ZP_03568259.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
 gi|221185106|gb|EEE17497.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
          Length = 1031

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 59/191 (30%), Gaps = 31/191 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    V+ D ET G         + +  ++    E +E  E F           PE V +
Sbjct: 60  LEEDIVVLDTETTGLSFKTCGLIEISAAKI-SGREIVERFETF---VDPRKPIPPEIVAL 115

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT +          E    +  F        +  +N  FD         R F +    
Sbjct: 116 THITDEDVAGAPRA-KEAVSALADFV---GGLPVLAHNAVFD---------RTFIERVPG 162

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
             +  N+  D L + R                   +S KL  +A A G      H A  D
Sbjct: 163 GHEVSNTWIDTLSLSRIA-------------LPRLSSHKLSRMAEAFG-ALRVTHRASDD 208

Query: 181 VYATLALVWLI 191
           V A + +  +I
Sbjct: 209 VDALVGMWRII 219


>gi|254508645|ref|ZP_05120760.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16]
 gi|219548402|gb|EED25412.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16]
          Length = 247

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 57/204 (27%), Gaps = 31/204 (15%)

Query: 2   TNHFVIYDYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
            +  V+ D ET G +          R  +   V +    +       F      D     
Sbjct: 9   QHRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDRDIQA 65

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           EAV + GIT +  +       E+     +F        +  +N  FD  +    F     
Sbjct: 66  EAVQVHGITDEFLVDKP----EYQDVHAEFLEFIKGAELVAHNAPFDTGFMDYEFE--ML 119

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVN 173
           D      D+     D L + + I+                    L  L    GI+  H  
Sbjct: 120 DPSIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDILCDRYGIDNSHRT 165

Query: 174 AHDAKADVYATLALVWLIREKKPK 197
            H A  D      +  L+   +  
Sbjct: 166 LHGALLDAEILADVYLLMTGGQTS 189


>gi|254796828|ref|YP_003081665.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str.
           Illinois]
 gi|254590057|gb|ACT69419.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str.
           Illinois]
          Length = 228

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 61/217 (28%), Gaps = 29/217 (13%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           VI D ET G D    DR  +   V +   +       +F      +     EA  + GIT
Sbjct: 7   VILDTETTGLDMKNGDRVIEIGCVEM-VDFRITGE--IFHIYLNPEREISKEATRVHGIT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++         + +    QF        I  +N  FD  +  +   R            
Sbjct: 64  FEQLADSPK-FIDIADDFLQFIGSSE---IVAHNASFDIRFLNSELIRARQRRLIK---- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             +  D L + R I+  SP                L  L     I       H A  D  
Sbjct: 116 LENVIDTLAMARKIFPGSPA--------------SLDALCRRFRISLEQREFHGALLDAQ 161

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
               +   + +          +  + +  +K+   + 
Sbjct: 162 LLARVYIELSKGSQVSMS-FLEGSSASSEKKMFKERE 197


>gi|157962223|ref|YP_001502257.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC
           700345]
 gi|157847223|gb|ABV87722.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC
           700345]
          Length = 242

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +I D ET G + +        R  +   V V             +         D EA+ 
Sbjct: 11  IILDTETTGMNQSSGPIYLGHRIIEIGCVEV-VNRRLTGRHYHEY--INPQQPIDEEAIA 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +          E ++   +F    +   I  +N  FD  +  + F  +      
Sbjct: 68  VHGITNEFVADKPKFH-EVAQSFIEFI---DGAEIVAHNANFDVSFMDHEF--SMLQPLG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
               +     D L + + ++    +               L  L    GI++   + H A
Sbjct: 122 PKTADICQILDSLAIAKHLHPGQKN--------------NLDALCKRYGIDNSARDLHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  L+   + K 
Sbjct: 168 LLDAEILADVYLLMTGGQTKF 188


>gi|284931104|gb|ADC31042.1| DNA polymerase III alpha subunit polC/Gram positive-type
           [Mycoplasma gallisepticum str. F]
          Length = 1494

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 73/227 (32%), Gaps = 31/227 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF------CKPADDYLPDPEA 57
            FVI+D ET G +   ++  + A VRV  +  +      F           ++       
Sbjct: 409 SFVIFDIETTGLNAYYEQIIEIAAVRVKAELNETNHQLEFVQLGKFEKLIKNEKPLSKFT 468

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+           E         F    +  ++ +N I FD  +      +     
Sbjct: 469 TQLTGLKDSDLKDA-QDEKTVLEEFANFIQKDD-VLVAHNGIDFDFIWINTKLDKYKLKP 526

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AH 175
                        +LD +R  Y                  + L++L+L  G E+    AH
Sbjct: 527 LDNP---------MLDSLRLAYQLY-----------QFKRYTLENLSLKLGYEYDKTLAH 566

Query: 176 DAKADVYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            A  D        + ++ +   K +  L D  ++ +L   +  +++ 
Sbjct: 567 RANYDTELLAKCLMIMLSQIYAKNWRSLLDLNDQEKLLNYLSEKSLK 613


>gi|149195052|ref|ZP_01872144.1| Exonuclease [Caminibacter mediatlanticus TB-2]
 gi|149134765|gb|EDM23249.1| Exonuclease [Caminibacter mediatlanticus TB-2]
          Length = 293

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 18/218 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +I D ET G +   DR  Q + + ++    +IE       KP        EA+ +  I
Sbjct: 2   KIIILDTETTG-NKQEDRICQLSYLVLNEDL-EIEEIHNELVKPP--IPISYEAMAVHHI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       ++   S +  +  + P   I+ +N+  FD    R   +  F+        
Sbjct: 58  TNEMVEDKPQIKFTNSYKRLKELNSPENIIVIHNS-EFDLEMLRKEGFNPFFKLIDTFRV 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +   D    ++                      K +D+     I  +NAHDA  DV  
Sbjct: 117 LKHILPDGKFGLQYNRYALGLY------------KKEKDICKKYNI-TINAHDALGDVVV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
              L   I +     +E L +   K  L          
Sbjct: 164 LYLLFEYILKNHNLTYEELIELTQKPILYDKFYQGKYK 201


>gi|115452527|ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group]
 gi|108707691|gb|ABF95486.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
 gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa Japonica Group]
 gi|215678888|dbj|BAG95325.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 313

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 64/210 (30%), Gaps = 28/210 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G     +R  +FA VR D                  +     +  ++ GI
Sbjct: 112 TILVFDIETTGFSRRYERIIEFA-VR-DLMG---GKNSTIQTLINPEREI--KNAYVHGI 164

Query: 64  TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           +     +  +    EF   + Q+      +      + +N   FD  +    F R+  + 
Sbjct: 165 SSSMVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEM 224

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
                       D L + R +           S  +   S  L +L     I    +AH 
Sbjct: 225 -----PGDWLFVDTLPIARQL---------IGSDGEKLKSVSLDNLREHYKIPLAGSAHR 270

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYR 206
           A  DV     ++  +  +       L +  
Sbjct: 271 AMQDVITLCYVLQKLTFELKLTVPQLLERS 300


>gi|332535809|ref|ZP_08411542.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332034787|gb|EGI71325.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 237

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 28/201 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M    ++ D ET G D     R  +   V  V+R+     +   F          + EA+
Sbjct: 1   MARRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRL----TGNNFHVYINPQRPSEEEAI 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT +      +   + ++    +       ++ +N      +        N     
Sbjct: 57  DVHGITNEFLRDKPLFH-QIAQEFFDYIE--GAELVIHNAPFDVGHMDNEFALLNQGYPK 113

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
             ++       D L + R ++    +               L  L     +++     H 
Sbjct: 114 TETF---CQVLDTLKMARDLHPGQKN--------------NLDALCRRYDVDNAKRTLHG 156

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D      +   +   + K
Sbjct: 157 ALLDSEILADVYLAMTGGQTK 177


>gi|319762901|ref|YP_004126838.1| DNA polymerase iii, epsilon subunit [Alicycliphilus denitrificans
           BC]
 gi|330824980|ref|YP_004388283.1| DNA polymerase III subunit epsilon [Alicycliphilus denitrificans
           K601]
 gi|317117462|gb|ADU99950.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
           BC]
 gi|329310352|gb|AEB84767.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
           K601]
          Length = 242

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 50/194 (25%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G      DR  +   V       +  +          +     +A+ + GI+
Sbjct: 5   IVLDTETTGLSAENGDRIIELGCV---ELLSRKLTGNNLHLYLNPERDSHEDALKVHGIS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE    I ++       I   +N  FD  +                 D 
Sbjct: 62  NEFLRDKPK-FAEVVHDILEYLRGAELII---HNASFDVGFLDKELELAGLPPLAAHVDG 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + + ++                    L  L     +++     H A  D  
Sbjct: 118 ---VIDTLAMAKEMFPG--------------KRNSLDALCDRLEVDNSGRTLHGALLDAE 160

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 161 LLADVYINMTRGQD 174


>gi|260901010|ref|ZP_05909405.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308110780|gb|EFO48320.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 248

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 24/197 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
           FV  D+ET G +   D       V        I+  +           +   + E+V I 
Sbjct: 58  FVSVDFETTGLNAEEDAILTIGLVPF-----TIDRVQCSGSAHWIVNPNRELNEESVVIH 112

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +         +    I    +     ++ +               R F+ +   +
Sbjct: 113 GITDSEVKNAPQ-LTQILGEILDALA--GKVVLVH----------YKNIERQFFYNALLN 159

Query: 122 WDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAK 178
                 ++ ++D +   YA         W         S +L       G+     H A 
Sbjct: 160 TIGEGIQFPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLPAYQPHHAL 219

Query: 179 ADVYATLALVWLIREKK 195
            D  AT  L     +  
Sbjct: 220 TDALATAELFQAQLQYH 236


>gi|258510511|ref|YP_003183945.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477237|gb|ACV57556.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 240

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 71/267 (26%), Gaps = 52/267 (19%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITGI 63
           FV+ D ET G      R  + A V V  +       ++ +           PEA  +  I
Sbjct: 8   FVVVDTETTGLPPE-GRVVELALVEVGLER----EPQIVYSALVDPGCPIPPEASAVHHI 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       +  +   ++ ++       I+  +N  FD         R         W 
Sbjct: 63  TDRDVAGKPRLF-QVWPKVLEYI---GDAILVAHNAEFD---------RGMLPETGRPW- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADV 181
                   +   R       D          A     Q L    GI  E    H A  D 
Sbjct: 109 --------ICSKRLAQHLWRD----------APKHSNQVLRYWLGIDVEVGQPHRALGDA 150

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  +         +      +    + +  LI     +P+   +  FG  +       
Sbjct: 151 IVTAHVF-------QRELRAYLEAGYPDDVDDLIAFAE-SPIEVQTMPFGKHKGMPLKDV 202

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDL 268
           P+     Y D  +         +   +
Sbjct: 203 PL----DYLDWALRNLQDLSPDLRWSM 225


>gi|256823144|ref|YP_003147107.1| DNA polymerase III subunit epsilon [Kangiella koreensis DSM 16069]
 gi|256796683|gb|ACV27339.1| DNA polymerase III, epsilon subunit [Kangiella koreensis DSM 16069]
          Length = 233

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 63/212 (29%), Gaps = 28/212 (13%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G +     R  +   V  V+R++    +   +      D   D  A+ + GI
Sbjct: 4   IVLDTETTGLEPYDGHRIIEIGCVELVNRKF----TGNHYHQYLQPDREIDQGAMEVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +           F   + +F        +  +N  FD  +  +    +  DS +    
Sbjct: 60  TNEFLEDKPR----FVDVVDEFLEFIEGAELVIHNAPFDVGFLDHEL--SMLDSSKGKLS 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181
           +  +  D L + R ++    +               L  L         H   H A  D 
Sbjct: 114 DYCTVLDTLVLARQMHPGQRN--------------SLDALCKRYEIDNSHRELHGALLDS 159

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
                +   +   +  L     +  N+     
Sbjct: 160 EILADVYLRMTGGQTSLTLGRQNAANQQTTET 191


>gi|153006661|ref|YP_001380986.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030234|gb|ABS28002.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 200

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 56/184 (30%), Gaps = 12/184 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +   D ET G D   D       + +     ++        +P    + DP++V    + 
Sbjct: 13  YWALDLETGGLDARRDPIIAIGMLPIRHGTLRLGEAYYSLVRPPPGRIIDPDSVRAHQLV 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +  E  R + +        ++  ++   D  + ++ + R            
Sbjct: 73  AGELREAPAI-GEVLREVDRRLREG---VLLVHHRALDVAFLKDAYRRCGMRWPA----- 123

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +D++  I A      + P          L       G+    AHDA +D  A 
Sbjct: 124 -PRVVDTVDLL--IRAKRRSPFKDPHLPPVLPVLNLTRARREYGLPDYQAHDALSDAIAA 180

Query: 185 LALV 188
             L 
Sbjct: 181 AELF 184


>gi|303250637|ref|ZP_07336834.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650625|gb|EFL80784.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 257

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 57/216 (26%), Gaps = 30/216 (13%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G   +          +   V V            F          + EA+ +
Sbjct: 10  VVLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +      V  AE +    +F       I   +N  FD  +    F        + 
Sbjct: 67  HGITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 S  D L V R +Y                    L  L    GI++     H A 
Sbjct: 123 --AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
            D      +  ++   +  L            +  L
Sbjct: 167 LDAEILADVFLMMTGGQLALLGEEDATATHENVADL 202


>gi|88608300|ref|YP_506355.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600469|gb|ABD45937.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 228

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 56/200 (28%), Gaps = 28/200 (14%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           VI D ET G D    DR  +   V V   +       +F      +     EA  + GIT
Sbjct: 7   VILDTETTGLDMKNGDRVIEIGCVEV-VDFRITGE--IFHIYLNPEREISKEATRVHGIT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++         + +    +F        I  +N  FD  +  +   R            
Sbjct: 64  FEQLADSPK-FIDIADDFLKFIDSSE---IVAHNASFDIRFLNSELIRARQRRLIK---- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             +  D L + R I+  SP                L  L     I       H A  D  
Sbjct: 116 LENVIDTLAMARKIFPGSPA--------------SLDALCRRFRISLEQRELHGALLDAQ 161

Query: 183 ATLALVWLIREKKPKLFEYL 202
               +   + +       +L
Sbjct: 162 LLARVYIELSKGSQVSMSFL 181


>gi|288956846|ref|YP_003447187.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
 gi|288909154|dbj|BAI70643.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
          Length = 227

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 59/210 (28%), Gaps = 29/210 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G       R  +   + +       E   V+      +    PEA  + G++
Sbjct: 4   IVLDTETTGFKPEEGHRLVEIGCIELVNHLATGERFHVY---LNPERDMPPEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   + +     F        +  +N  FD ++         Y         
Sbjct: 61  EEFLADKPL-FNDVAADFVAFI---GDSPLVIHNAAFDMHFLNWELKIAGYPVMP----- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +  SP                L  L    G+++ N   H A  D  
Sbjct: 112 KDRAIDTLLMARQKFPGSPAT--------------LDALCKRFGVDNSNRTLHGALLDAQ 157

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
               +   +   +     +     +K  + 
Sbjct: 158 LLAEVYLELLGGRQTGLSFAGGPVSKGGVA 187


>gi|283783999|ref|YP_003363864.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168]
 gi|282947453|emb|CBG87000.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168]
          Length = 243

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 57/204 (27%), Gaps = 30/204 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHIYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      A+ +     +        +  +N  FD  +    F +   D  + 
Sbjct: 66  HGIADEFLLDKP-TFADVADEFLDYIRGAE---LVIHNASFDIGFMDYEFSKLNRDIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           S        D L + R ++                    L  L     I++     H A 
Sbjct: 122 SSF--CKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
            D      +   +   +  +   +
Sbjct: 166 LDAQILADVYLAMTGGQTSMTFAM 189


>gi|198282704|ref|YP_002219025.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665705|ref|YP_002424896.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247225|gb|ACH82818.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517918|gb|ACK78504.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 248

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 32/201 (15%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G D     R  +   V  +DR     E+    +         DPEA+ I G+
Sbjct: 6   VVLDTETTGIDWKQGHRVIEIGAVELIDR--RVTEAYYQQY--LNPQRSSDPEALRIHGL 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE +    +F       I   +N  FD  +  +          R    
Sbjct: 62  TDEFLQDQPG-FAEVADAFLEFLGDAELII---HNAPFDLGFLNHELQLAGKAPLR---- 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
              +  D L   R  +    +               L  L     +E  H   H A  D 
Sbjct: 114 --QAVMDTLADARRRHPGQKN--------------DLNSLCRRYSVENSHRELHGALLDT 157

Query: 182 YATLALVWLIREKKPKLFEYL 202
                +   +   +  +   L
Sbjct: 158 RILAEVYLAMTGGQVDMMGML 178


>gi|152968358|ref|YP_001364142.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151362875|gb|ABS05878.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 224

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 53/187 (28%), Gaps = 29/187 (15%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G      DR  Q A   +D +     S             P P    + GI
Sbjct: 26  YAVLDVETTGLRPETGDRVVQIAVTLLDARGTVERSWSSL---VDPHRDPGP--THVHGI 80

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++        A+ +  +       +  +   +N RFD  +                  
Sbjct: 81  TAERLAGAP-TFAQLAPTVAGLL---DGRVFVAHNARFDWKFVSAEMRAAGVHLPVRQRL 136

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   LD+                      + KL  LA   G+  +  HDA+ D   
Sbjct: 137 CTWELAQRLDL-------------------PVENLKLATLAEHWGVRQLRPHDAEDDTRV 177

Query: 184 TLALVWL 190
            + ++  
Sbjct: 178 LVEVLRE 184


>gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 235

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 37/222 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61
           +I+D ET G +   DR  +   +      E I        F       D +   E V I 
Sbjct: 4   IIFDTETTGLNKESDRIIEIGCI------EMINRYLTGRRFHVYLNPQDVIIPDEVVAIH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T ++   +     +    +  F        I  +N  FD  +      R         
Sbjct: 58  GLTNERLKDEKK-FDDIVDALLDFIDD---ATIVAHNANFDIGFLNAELERVNKPLI--- 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
             N ++  D L + R  +   P+               L  L    GI++ +   H A  
Sbjct: 111 --NSDNVIDTLSIARRRFPMGPN--------------SLDVLCKRFGIDNSHRVLHGALL 154

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           D      +   +   K  +F   +D      +  + D +N  
Sbjct: 155 DAEILADVYIELIGGKQGIF--SFDNYESCDVMNVQDNKNAF 194


>gi|295691552|ref|YP_003595245.1| DNA polymerase III subunit epsilon [Caulobacter segnis ATCC 21756]
 gi|295433455|gb|ADG12627.1| DNA polymerase III, epsilon subunit [Caulobacter segnis ATCC 21756]
          Length = 237

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 29/190 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D    DR  +   + V   +     +   +C P  D     EA  + G++
Sbjct: 5   IILDTETTGFDPKTGDRLVEIGCIEV-VDFMPTGRSFHEYCDPLRDM--PAEAEKVHGLS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E + R  +F       ++  +N  FD  +      +      R     
Sbjct: 62  SAFLTGKPKFH-EIADRFVEFV---GDSVVVAHNAAFDRQFVNFELEKCGRAPIR----- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
            +   D L + +  +    +               L  L     I     + H A  D +
Sbjct: 113 EDRWVDTLAMAKKRFPGMYN--------------SLDALCKRFKISLESRDKHGALIDAH 158

Query: 183 ATLALVWLIR 192
               +   ++
Sbjct: 159 LLAEVYLELQ 168


>gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 239

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 27/200 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + A  DR  + AGV +             +     D    P+A+ + G+T
Sbjct: 5   IVLDTETTGLNPASGDRIIEVAGVEL-FNRRLTGKHYHAY--LNPDRASHPDALKVHGLT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E + +  + +F       I   +N  FD  +      R    ++      
Sbjct: 62  EEFLSDKPRFE-QIADDLLEFVRDAEVII---HNAPFDCAFLDAELERLNRPAF------ 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                      R       D +             L  L    GI+  H   H A  D  
Sbjct: 112 -----------RQHVPLVTDTLAMAKLQFPGKFNNLDALCKRFGIDNTHRTLHGALLDAE 160

Query: 183 ATLALVWLIREKKPKLFEYL 202
               +   +   +  L   L
Sbjct: 161 LLAEVYLSLTRGQESLVIDL 180


>gi|145299712|ref|YP_001142553.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852484|gb|ABO90805.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 244

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 63/200 (31%), Gaps = 32/200 (16%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +I D ET G + A        R  +   V V    +   +    + KP  D L DPEA+ 
Sbjct: 10  IILDTETTGMNTAGGPIYLGHRIIEIGCVEV-INRKLTGNHYHVYIKP--DRLVDPEAIQ 66

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT           ++ +     F        +  +N  FD  +    F +   +   
Sbjct: 67  VHGITDVFLADKP-SFSQIANDFIDFIRGAE---LIAHNAPFDVSFMDYEFGKLGLNFKT 122

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177
               +  S  D L + R ++                    L  L    GI+  H   H A
Sbjct: 123 R---DICSITDTLAIARDLFPG--------------KRNNLDVLCDRYGIDNSHRTLHGA 165

Query: 178 KADVYATLALVWLIREKKPK 197
             D      +  L+   + K
Sbjct: 166 LLDAEILADVYLLMTGGQTK 185


>gi|332073070|gb|EGI83549.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Streptococcus pneumoniae GA17570]
          Length = 168

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 29/189 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLI 191
           AT  L+   
Sbjct: 157 ATAELLLFY 165


>gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
           HTCC2559]
 gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
           HTCC2559]
          Length = 1454

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 69/198 (34%), Gaps = 30/198 (15%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D   + + S +    KP    +P 
Sbjct: 2   YLIFDTETTGLPKNYNAPITDTDNWPRCIQIAWQLHDDMGKLV-SHDDMLIKPDGFNIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            ++  I GI+ + A ++GV   +   + ++      T  +   N+ FD       FYR  
Sbjct: 61  -DSEQIHGISTELADKNGVDLVDSLHKFNEALKQ--TKFVVGQNVAFDINIMGAEFYRKG 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA----LANGIE 170
            D+              L V+      + +  + P    G   FKL  L           
Sbjct: 118 IDNPLQE----------LPVLDTCTETTAELCKIPGGRGGK--FKLPTLTELHQFLFNKA 165

Query: 171 HVNAHDAKADVYATLALV 188
              AH+A ADV AT    
Sbjct: 166 FNEAHNATADVEATTRCF 183


>gi|304383117|ref|ZP_07365592.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
 gi|304335803|gb|EFM02058.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
          Length = 889

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 33/237 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--STEVFFCKPAD-----DYLPDPEAV 58
           V++D ET G DV  D   Q A ++V R  + +E  S  VF     +       +P+P   
Sbjct: 504 VVFDTETTGLDVFADDIVQLAAIKV-RNGKVVEGSSFNVFIRTEREIPAMLGDIPNP--- 559

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
               I  +    + +   E   +   + +      +  +N+ +D +       R+     
Sbjct: 560 ----IIEEMKHHECLSPEEAFAQFMDYVAD---DAVLGHNVEYDFHILLYNLLRHA--PQ 610

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    R+D L ++R ++                 S+KL+ L    G+E  N+H A 
Sbjct: 611 WVERWKAVERFDSLKLIRLLH-------------PRQKSYKLKHLLERLGLEGTNSHLAD 657

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
            D+ AT +L            +    + + ++            L   S      R 
Sbjct: 658 DDIMATKSLADYCYRHAVACVDEQQRFIDAHRPMVEKFRHVYADLFFHSFHRLYVRH 714


>gi|262402358|ref|ZP_06078919.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262351140|gb|EEZ00273.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 233

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 55/191 (28%), Gaps = 13/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D+ET G +   D       V      ++I   +  +         + ++V I GIT
Sbjct: 44  LVALDFETTGLNAQQDDILSIGLVPF--NTQRIALKQARYWLVKPSRPLEEDSVVIHGIT 101

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +       E        + F      I+  +    +  + R    +       W    
Sbjct: 102 HTELKHAQEPEV----VFSELFDALRGKIVVAHFRHIEREFLRQTTLK------LWEEAV 151

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L++  ++        Q   R     S +L    L  G+   + H A  D  AT
Sbjct: 152 EFPIIDTLEIELSVQNTQRSLWQRLLRSPI-PSVRLGQSRLRYGLPAYSPHQALTDAIAT 210

Query: 185 LALVWLIREKK 195
             L        
Sbjct: 211 AELFQAQYAHH 221


>gi|86360676|ref|YP_472564.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42]
 gi|86284778|gb|ABC93837.1| probable polymerase epsilon subunit protein [Rhizobium etli CFN 42]
          Length = 326

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 60/217 (27%), Gaps = 32/217 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           VI D ET G +   D   +   V    +      +   ++           P+   +TGI
Sbjct: 75  VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAVGDVVGIYGGLQQPSRPIPPDITRLTGI 134

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +        ++         +I  +N  FD  +                  
Sbjct: 135 TDVMVEGQTID----MPSLNALIE--PADLIIAHNAGFDRPFCEA--------------- 173

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      + A  A++    +      G    KL  L    G  H   H A  D +A
Sbjct: 174 --------FSPIFAGKAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHGG-HRAVDDCHA 224

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
            L ++   +      F  LY    + ++R   +    
Sbjct: 225 LLEILDRQQGDGESPFAELYRASQRCRVRIFAEHSPF 261


>gi|22126970|ref|NP_670393.1| DNA polymerase III subunit epsilon [Yersinia pestis KIM 10]
 gi|45442535|ref|NP_994074.1| DNA polymerase III subunit epsilon [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597279|ref|YP_071470.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
           32953]
 gi|108806557|ref|YP_650473.1| DNA polymerase III subunit epsilon [Yersinia pestis Antiqua]
 gi|108813076|ref|YP_648843.1| DNA polymerase III subunit epsilon [Yersinia pestis Nepal516]
 gi|145598912|ref|YP_001162988.1| DNA polymerase III subunit epsilon [Yersinia pestis Pestoides F]
 gi|149366915|ref|ZP_01888949.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
 gi|153948473|ref|YP_001400036.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
           31758]
 gi|162419464|ref|YP_001607083.1| DNA polymerase III subunit epsilon [Yersinia pestis Angola]
 gi|165924368|ref|ZP_02220200.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938341|ref|ZP_02226899.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011939|ref|ZP_02232837.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211805|ref|ZP_02237840.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399939|ref|ZP_02305457.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419869|ref|ZP_02311622.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424264|ref|ZP_02316017.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023355|ref|YP_001719860.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
           YPIII]
 gi|186896384|ref|YP_001873496.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928251|ref|YP_002346126.1| DNA polymerase III subunit epsilon [Yersinia pestis CO92]
 gi|229841013|ref|ZP_04461172.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843118|ref|ZP_04463264.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229895464|ref|ZP_04510636.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
 gi|229903519|ref|ZP_04518632.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
 gi|270487300|ref|ZP_06204374.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
 gi|294503098|ref|YP_003567160.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
 gi|21960013|gb|AAM86644.1|AE013910_6 DNA polymerase III, epsilon subunit [Yersinia pestis KIM 10]
 gi|45437400|gb|AAS62951.1| DNA polymerase III, epsilon chain [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590561|emb|CAH22202.1| DNA polymerase III, epsilon chain [Yersinia pseudotuberculosis IP
           32953]
 gi|108776724|gb|ABG19243.1| DNA polymerase III, epsilon subunit [Yersinia pestis Nepal516]
 gi|108778470|gb|ABG12528.1| DNA polymerase III, epsilon subunit [Yersinia pestis Antiqua]
 gi|115346862|emb|CAL19748.1| DNA polymerase III, epsilon chain [Yersinia pestis CO92]
 gi|145210608|gb|ABP40015.1| DNA polymerase III, epsilon subunit [Yersinia pestis Pestoides F]
 gi|149291289|gb|EDM41364.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
 gi|152959968|gb|ABS47429.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162352279|gb|ABX86227.1| DNA polymerase III, epsilon subunit [Yersinia pestis Angola]
 gi|165913719|gb|EDR32338.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923428|gb|EDR40560.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989106|gb|EDR41407.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207576|gb|EDR52056.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962610|gb|EDR58631.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050647|gb|EDR62055.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057113|gb|EDR66876.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749889|gb|ACA67407.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186699410|gb|ACC90039.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679289|gb|EEO75392.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
 gi|229689465|gb|EEO81526.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697379|gb|EEO87426.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701619|gb|EEO89646.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
 gi|262361135|gb|ACY57856.1| DNA polymerase III subunit epsilon [Yersinia pestis D106004]
 gi|270335804|gb|EFA46581.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
 gi|294353557|gb|ADE63898.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
 gi|320014218|gb|ADV97789.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 254

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 30/215 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +     F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGISDEFLADKP-TFADITPEFLDFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCTITDSLLMARRLFPG--------------KRNNLDALCDRYQIDNTKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            D      +   +   +  L   +    ++N   +
Sbjct: 166 LDAEILAEVYLAMTGGQTSLTFSMEGEVSQNNASE 200


>gi|330959421|gb|EGH59681.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 259

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 55/198 (27%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           V+ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  VVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N F           
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNEFALMGAQDKADI 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                S  D L + R  +    +               L  L    G+++     H A  
Sbjct: 121 -TRHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILAEVYLAMTGGQTS 183


>gi|307704598|ref|ZP_07641501.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK597]
 gi|307621843|gb|EFO00877.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK597]
          Length = 816

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    + ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGKIVDRYTT---DVNPHEPLDAHIQELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +REK  +L + L +
Sbjct: 157 ATAELLLFLREKMAQLPKGLLE 178


>gi|238893208|ref|YP_002917942.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545524|dbj|BAH61875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 246

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +    F +      + 
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNASFDIGFMDYEFSKLNRGIGKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 125 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +  ++   +  +
Sbjct: 169 LDAQILADVYLMMTGGQTSM 188


>gi|149926803|ref|ZP_01915062.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149824355|gb|EDM83573.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 308

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 62/222 (27%), Gaps = 39/222 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ------WEKIESTEVFFCKPADDYLPDPEAVF 59
           ++ D ET G D A     +   V ++           + +               PE   
Sbjct: 47  LVVDTETTGLDYATCEVIEVGAVLIEVDQDTGAIGAVLGTFGGLE---EPKVAITPENSA 103

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GIT +     G    E +    +         + +N   FD  +              
Sbjct: 104 IHGITNEMV--KGQRFDEAA---LKALCSEAALFVAHNA-AFDKPFMLR----------- 146

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                   R+  L+       F       P   +  +  KL+ L    G  H  AH A  
Sbjct: 147 --------RFPWLEKSIWACTFRE----LPWTQENYSGRKLEYLLSDCGYFHG-AHRAVE 193

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           D  A + ++    +   ++   +        + ++  ++   
Sbjct: 194 DCNALVHVLAQPMKTSQRMPFQVLFDSANESIYQIAALKAPF 235


>gi|238790133|ref|ZP_04633910.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
           33641]
 gi|238721802|gb|EEQ13465.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
           33641]
          Length = 259

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 30/215 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 14  IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +    +F        +  +N  FD  +    F     D  + 
Sbjct: 71  HGISDEFLADKP-TFADITPEFLEFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIPKT 126

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 127 E--TFCTITDSLLLARRLFPG--------------KRNNLDALCDRYQIDNTKRTLHGAL 170

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            D      +   +   +  L   +   +++N   +
Sbjct: 171 LDAEILAEVYLAMTGGQTSLSFSMEGDQSQNDSSE 205


>gi|221134302|ref|ZP_03560607.1| DNA polymerase III, epsilon subunit [Glaciecola sp. HTCC2999]
          Length = 240

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 73/234 (31%), Gaps = 35/234 (14%)

Query: 6   VIYDYETFGRDVAL-------DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           ++ D ET G             R  +   V  VDR+     +   +          DPEA
Sbjct: 4   IVLDTETTGMSRESGEHFTHGHRIIEIGCVELVDRKL----TGNHYHVYINPQQDIDPEA 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + + GIT +      +   E ++    F    +   +  +N  FD  +    F  N   +
Sbjct: 60  IAVHGITNEFLEDKPL-FKEIAQGFIDFI---DGAELVIHNAPFDVGFMDLEFALNPATA 115

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAH 175
              +     +  D L + + +     +               L  L    GI+  H + H
Sbjct: 116 LTRTEKF-CTVLDTLVLAKKMRPGQRN--------------NLDALCREYGIDNSHRDLH 160

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNK--NQLRKLIDIQNMTPLVHVS 227
            A  D      +  L+   +  L        +   + + KL    +   ++H +
Sbjct: 161 GALLDAEILADVYLLMTGGQETLSLETGTKSSSGFDNVEKLAPRTSALKIIHAT 214


>gi|15601971|ref|NP_245043.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|31563219|sp|Q9CPE0|DPO3E_PASMU RecName: Full=DNA polymerase III subunit epsilon
 gi|12720318|gb|AAK02190.1| DnaQ [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 253

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 59/203 (29%), Gaps = 31/203 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      +   DP+A+ +
Sbjct: 11  IVLDTETTGMNQFGAHYEGHCIIEIGAV---EMINRRLTGNNFHIYIKPNRPVDPDAIKV 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +      +   E +++   +       I   +N  FD  +    F +        
Sbjct: 68  HGITDEMLADKPM-FNEVAQQFIDYIQGAELLI---HNAPFDVGFMDYEFKKLNL----- 118

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              N ++   + D ++                       L  L    GI++     H A 
Sbjct: 119 -NINTDAICMVTDTLQMARQMY-----------PGKRNSLDALCDRLGIDNSKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
            D      +   +   +  LF+ 
Sbjct: 167 LDAEILADVYLTMTGGQTSLFDE 189


>gi|291295885|ref|YP_003507283.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
 gi|290470844|gb|ADD28263.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
          Length = 267

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 58/196 (29%), Gaps = 30/196 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G         + A +R++          VF        L  P    +TGI  
Sbjct: 90  VVLDIETTGLSPTDHEIIELALIRLEN-----GRRTVFERLVNPGVLIPPFISRLTGIRS 144

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q         A+    + + + + +   +   N  FD  + +  F R         +   
Sbjct: 145 QDVRDA----ADIYTVLEEAWPLLDNATLIIQNASFDLGFLQPRFKRLG-------YRLD 193

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYAT 184
           N   D +   R                 G T   L  LA A  +  + A H A  DV  T
Sbjct: 194 NPVVDTIHWARKA-------------LPGLTKRGLDSLAWAFDLGPIPARHRAMGDVETT 240

Query: 185 LALVWLIREKKPKLFE 200
           L +   +         
Sbjct: 241 LQVAHEMYYMLTAGHP 256


>gi|319898197|ref|YP_004158290.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
 gi|319402161|emb|CBI75687.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
          Length = 235

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 35/202 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61
           +I+D ET G +   DR  +   +      E I        F         +   E V I 
Sbjct: 4   IIFDTETTGLNKESDRIIEIGCI------EMINRYLTGRRFHVYLNPQGVVIPDEVVAIH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T ++   +     +    +  F    +   I  +N  FD  +      R         
Sbjct: 58  GLTNERLKDEKK-FDDIVDALLDFI---DGATIVAHNANFDIGFLNAELERVNKPLVSI- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
               N   D L + R  +   P+               L  L    GI++ +   H A  
Sbjct: 113 ----NHVIDTLAIARRRFPTGPN--------------SLDVLCKRFGIDNSHRVLHGALL 154

Query: 180 DVYATLALVWLIREKKPKLFEY 201
           D      +   +   K  +F +
Sbjct: 155 DAEILADVYIELIGGKQGIFGF 176


>gi|260767799|ref|ZP_05876734.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260617308|gb|EEX42492.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 246

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 55/201 (27%), Gaps = 31/201 (15%)

Query: 5   FVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            V+ D ET G +          R  +   V +    +       F      D     EA+
Sbjct: 12  IVVLDTETTGMNLEGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRAIQDEAI 68

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT +  +       E+     +F        +  +N  FD  +    F +    + 
Sbjct: 69  EVHGITDEFLVDKP----EYKDVHEEFLDFIRGAELVAHNAPFDVGFMDYEFSKLSIPTA 124

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHD 176
           +          D L  +    A +                 L  L    GI+  H   H 
Sbjct: 125 KT---------DELCKVTDTLAMAKKIF-------PGKRNNLDVLCDRYGIDNSHRTLHG 168

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D      +  L+   +  
Sbjct: 169 ALLDAEILADVYLLMTGGQTS 189


>gi|16759250|ref|NP_454867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16763647|ref|NP_459262.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142975|ref|NP_806317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56414616|ref|YP_151691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363544|ref|YP_002143181.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205351595|ref|YP_002225396.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855776|ref|YP_002242427.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|60392203|sp|P0A1G9|DPO3E_SALTY RecName: Full=DNA polymerase III subunit epsilon
 gi|60392204|sp|P0A1H0|DPO3E_SALTI RecName: Full=DNA polymerase III subunit epsilon
 gi|25299960|pir||AF0534 DNA polymerase III epsilon chain [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|1172157|gb|AAA86422.1| dnaQ [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|1794290|gb|AAC44792.1| DNA polymerase III epsilon chain [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16418764|gb|AAL19221.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16501541|emb|CAD08718.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138607|gb|AAO70177.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56128873|gb|AAV78379.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095021|emb|CAR60567.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205271376|emb|CAR36169.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206707579|emb|CAR31853.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245489|emb|CBG23279.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267991951|gb|ACY86836.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156885|emb|CBW16361.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|332987210|gb|AEF06193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 243

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 30/212 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L   V    F+  + +F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 122 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            D      +   +   +  +   +     + Q
Sbjct: 166 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQ 197


>gi|326772455|ref|ZP_08231739.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505]
 gi|326637087|gb|EGE37989.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505]
          Length = 280

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 45/172 (26%), Gaps = 25/172 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     D   + A V  D       S              D     I G+ 
Sbjct: 42  YAVVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTL---IDPGAGVDVGPTHIHGLV 98

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++ +       E +  +    +     ++ +N      + ++ +  R   D        
Sbjct: 99  AEELIGAPG-FDEVADLLVADLA--GRAVVAHNARFDVGFLTQELGTRGLLD-------- 147

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                      R         ++W        S +L       G+E    H+
Sbjct: 148 -----------RGARVPRVCTMEWARHFMTTPSRRLTTCCEVAGVEIGRHHN 188


>gi|157369157|ref|YP_001477146.1| DNA polymerase III subunit epsilon [Serratia proteamaculans 568]
 gi|157320921|gb|ABV40018.1| DNA polymerase III, epsilon subunit [Serratia proteamaculans 568]
          Length = 246

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 61/220 (27%), Gaps = 31/220 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   + V             + KP  D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHRIIEIGALEV-INRRPTGRHYHVYIKP--DRLVDPEAYGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +     F       ++ +N                F D    
Sbjct: 66  HGISDEFLADKP-TFAQIADEFIDFIR--GGELVIHNAAFDIG----------FMDHEFR 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
               G  + D    +      +                 L  L     I++     H A 
Sbjct: 113 MLQQGIPKTDTFCTITDSLLMARRLF-------PGKRNNLDALCSRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL-FEYLYDYRNKNQLRKLIDI 217
            D      +   +   +  + F+   D +N N  + +  I
Sbjct: 166 LDAEILAEVYLAMTGGQTSMAFQMEGDTQNSNSTQDIQRI 205


>gi|332528386|ref|ZP_08404380.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
           19624]
 gi|332042149|gb|EGI78481.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
           19624]
          Length = 252

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 51/194 (26%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G      DR  +   V       +  S                +A+ + GI+
Sbjct: 4   IVLDTETTGLSAEGGDRIIELGCV---ELLNRKLSGNNLHFYFNPGRDSHEDALRVHGIS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE ++ I  +       I   +N  FD  +           +       
Sbjct: 61  NEFLRDKPK-FAEVAQEILAYLQGAELII---HNAAFDVGFLNKELELIGKPALHTFVGG 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + + +Y                    L  L    G+++     H A  D  
Sbjct: 117 IT---DTLAMAKELYPG--------------KRNSLDALCDRLGVDNSGRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 160 LLADVYINMTRGQD 173


>gi|322376366|ref|ZP_08050859.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. M334]
 gi|321282173|gb|EFX59180.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. M334]
          Length = 816

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/420 (13%), Positives = 126/420 (30%), Gaps = 58/420 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    + ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGKIVDRYTT---DVNPHEPLDAHIKKLTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T ++  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDRRLAQAP-DFSQVARKIFDLVENG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELTQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +  ++ +        + 
Sbjct: 157 ATAELLLFLREKMAQLPKELL-----ERLLEMADALLYESYLVIEEIYRSQ-------SI 204

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL---NK 299
           +      +   +           + L     +K +   + E++       KEV L   N+
Sbjct: 205 LISSDLVEVQGLYFKKIVAPLESRKLS-QDFSKNISLLNLEVREEQESFAKEVDLLLKNE 263

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
              L+       + +        +  E   +L   T +           +        + 
Sbjct: 264 PVSLIQAPTGIGKTYGYLLPALSQVTERQIVLSVPTKILQNQIMEEEGKHLKE--VFHTD 321

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
           ++         ++            + L   F               L E+   YR ++F
Sbjct: 322 IHSLKGPHNYLKLDAFYRSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|119775015|ref|YP_927755.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119767515|gb|ABM00086.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 242

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 58/205 (28%), Gaps = 31/205 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +I D ET G +          R  +   V V            F          D EA+ 
Sbjct: 11  IILDTETTGMNQGAGAVYLGHRIIEIGCVEV-VNRRLTGR--TFHQYINPGQAIDEEAIA 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT  +   +     E       F        +  +N  FD  +  + F  +      
Sbjct: 68  VHGITNDRVAGEPRFH-EIVGGFLDFIRGAE---LVAHNASFDMSFINHEF--SMLVPQG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
              ++  +  D L + + ++    +               L  L    GI++     H A
Sbjct: 122 PKVEDICTVLDSLAIAKFLHPGQKN--------------NLDALCKRYGIDNTRRTYHGA 167

Query: 178 KADVYATLALVWLIREKKPKLFEYL 202
             D      +  ++   + K   + 
Sbjct: 168 LLDAEILADVYLVMTGGQTKFNLHA 192


>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 325

 Score = 81.0 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 76/280 (27%), Gaps = 34/280 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D + E  +     +     +  P P  V+I G+T
Sbjct: 22  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHW---YTMVNPERDPGP--VWIHGLT 75

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   + E + +       +     ++  +N  FD       + R        S   
Sbjct: 76  SDVLEGAPLFE-DIAAEFASRLADR---VLVAHNAVFDWSMIAREYAR------AKSQAP 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   + + +                    + KL+ LA   G+    AH A  D    
Sbjct: 126 VRQRLCTIALSK-------------ELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVL 172

Query: 185 LALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
                  +                              P    SG + +     +   PV
Sbjct: 173 AEAFRPSLHAAARDGVRLPLLECLPLTEWNATPRIGRQP----SGGYPSGSWRPSRKRPV 228

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283
             +P       G  L   MRV    D+    + L     E
Sbjct: 229 CPYPNPGRYEEGKPLKQGMRVAFSGDTSVDRELLEDRAVE 268


>gi|323259856|gb|EGA43487.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 243

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 62/218 (28%), Gaps = 30/218 (13%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L   V    F+  + +F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 122 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
            D      +   +   +  +   +     + Q  + I 
Sbjct: 166 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEETIQ 203


>gi|325973260|ref|YP_004250324.1| DNA polymerase III PolC [Mycoplasma suis str. Illinois]
 gi|323651862|gb|ADX97944.1| DNA polymerase III, PolC [Mycoplasma suis str. Illinois]
          Length = 1438

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 59/476 (12%), Positives = 128/476 (26%), Gaps = 48/476 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I+D ET G +   D   +   V        I+                 E + +T IT
Sbjct: 394 FSIFDLETTGLNPIFDEIIEI-FVLKYSSGTVIDHYYSLIRCNKKLRK---EIINLTHIT 449

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +K    G  +    + +  F S   T +I +N I FD  +  +   ++  +        
Sbjct: 450 EEKLNMSGRDKLTVLQEVRDFVS--GTVLIAHNGIDFDFPFLNSELRKSGLEPLDNP--- 504

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA--LANGIEHVNAHDAKADVY 182
                 +LD +R   A              + S+ L  +A  ++  +     H+++ D  
Sbjct: 505 ------ILDTLRLCKAL--------EEGKKSKSYSLFAIAKKMSINVVEQELHNSEYDTR 550

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS------- 235
               +     ++   L    Y Y     L    D   +      + +   +++       
Sbjct: 551 CLAKMWEFWSQQLIDLSLDPYTYDGLVNLNSSFDKDKLLRNYFGNNVIIFAKNQKGLKSL 610

Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
              +      H   K  +    +         L S   +  +    ++         ++ 
Sbjct: 611 YELVSIAHTEHFVDKPRLKWDAIETRRENLIVLSSPTNSALVNAVLNDEFDTFKKEGEKF 670

Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTL-----LRQQTNLRDRFKAIYNKPYT 350
                P      +     F   G                  +   N   +++        
Sbjct: 671 DYISLPPPSNFSHEISRGFFEDGEVETLLKTFYEWADNCQFKLIANYCLKYQDFKEVEQY 730

Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPE--QLSTLNLPF---SDRRLPELFFRYRA 405
                  S      +    +   D +   +    +       F   S++   +LFF YR 
Sbjct: 731 KVLVHAKSIGGKRHYLYSSKHGNDVLPDYSWRTTERLISEYDFLSLSEKEKEDLFFTYRY 790

Query: 406 RNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461
               +++S     +     K  L   +I      ++         +  + L   + 
Sbjct: 791 ELA-NSVSPDIFVN-----KSELAIPKIPGALENIKEYIHRKLTAKYGKKLDKQIQ 840


>gi|255534253|ref|YP_003094624.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
           3519-10]
 gi|255340449|gb|ACU06562.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
           3519-10]
          Length = 407

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 83/258 (32%), Gaps = 31/258 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D E+ G     +   + A  + D   E ++           +    P    +T I+
Sbjct: 2   YSVIDIESNGAGFRKESIIEIAVYKYDGH-EIVDQFISL---VNPESEITPFVQKLTKIS 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          E +RR+ +     NT ++G+N   FD    R  F R  YD    +   
Sbjct: 58  PKMVKTAPK-FPEIARRVIEITR--NTILVGHNI-DFDYRMLRQEFKRLGYDFTINT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + +                  A S+ L  L  + GI  V+ H A  D  AT
Sbjct: 111 ----LDTIPLAK-------------KLIPEAESYSLGKLVKSLGIPLVDQHRASGDARAT 153

Query: 185 LALVWLIREKKPKLF---EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
           L L  L+  K        ++  +   K  L K+ ++    P          +        
Sbjct: 154 LDLFKLLLIKDKNSEIIQQHHEESNGKTYLNKVRNLTQDLPAARGIIYMQNAEGKIIYFD 213

Query: 242 PVAWHPRYKDSVIGCNLS 259
            V    ++   V    L 
Sbjct: 214 FVDDLSKFAKHVFSSKLK 231


>gi|241763877|ref|ZP_04761921.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241366845|gb|EER61267.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 219

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 14/190 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G +V  D       VR+               +P        ++V I  +  
Sbjct: 43  VALDCETTGLNVRSDEIIAIGAVRIAGNRILTSERLELLVRPDKGV--SADSVRIHRLRS 100

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +     G+   E   R+ +F    +  ++GY        +   +  R  +          
Sbjct: 101 RDVA-QGLPLQEAMDRLLRFI--GSRPLVGYY-----LEFDVAMLNRALWPLLGMGLPQP 152

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L               +  + +     +   L    G+    AHDA  D     
Sbjct: 153 KIEVSAL----YYEYKFRQLPPYQQQGNADIDLRFATLMDDLGLPQREAHDALNDAVMAA 208

Query: 186 ALVWLIREKK 195
                +R+  
Sbjct: 209 LAFVKLRQLH 218


>gi|91775831|ref|YP_545587.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
 gi|91709818|gb|ABE49746.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
          Length = 231

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 62/207 (29%), Gaps = 29/207 (14%)

Query: 1   MTNHFVIYDYETFGR-DVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+   +  D ET G       R  + AGV  V+R+     +   F      D   D  A 
Sbjct: 1   MSMRQIFLDTETTGLYHAQGHRIIEIAGVELVNRRL----TNNHFHVYLNPDREIDEAAQ 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT +         A+      QF S  +  I   +N  FD  +      R    + 
Sbjct: 57  EVHGITLEFLQDKPR-FADIVDEFLQFVSGADLII---HNAPFDIGFLNAELNRVGRQNI 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
             S        D L + + +     +               L  L    GI++ +   H 
Sbjct: 113 EHSVL---EIIDTLKMAKEMRPGQRN--------------NLDALCRHYGIDNSSRTLHG 155

Query: 177 AKADVYATLALVWLIREKKPKLFEYLY 203
           A  D      +   +   +  L   + 
Sbjct: 156 ALLDAELLADVYMAMTRGQESLMIDML 182


>gi|83643302|ref|YP_431737.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83631345|gb|ABC27312.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 192

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 24/196 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G D       + +   +D +   +   +             PEA  I G+T 
Sbjct: 18  VVLDTETTGLD-DQAEVIEIS--VMDMRGNVL--FDQLVRPLNP---VPPEAAEIHGVTN 69

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +K          F       +       +   N  FD    +             +W   
Sbjct: 70  EKLANKPN----FPDVYISLWRAIGGRTVVAYNADFDRRLLKQTCAAYRLPMIEANWQ-- 123

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                      A+ A++    +  ++  G     L   A   GIE   AH A AD + T+
Sbjct: 124 ----------CAMNAYARYRKEPDAKRGGYRRQSLAKAAAQMGIEVYGAHRAVADCFTTV 173

Query: 186 ALVWLIREKKPKLFEY 201
            ++  +          
Sbjct: 174 EVIRAVAALSEPAHHN 189


>gi|237730199|ref|ZP_04560680.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
 gi|226905738|gb|EEH91656.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
          Length = 245

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 57/200 (28%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      A+ +     +        +  +N  FD  +    F +   D  + 
Sbjct: 69  HGIADEFLLDKP-TFADVADEFLDYIRGAE---LVIHNASFDIGFMDYEFAKLKRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 125 NEF--CKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +  ++   +  +
Sbjct: 169 LDAQILADVYLMMTGGQTTM 188


>gi|87124219|ref|ZP_01080068.1| Exonuclease [Synechococcus sp. RS9917]
 gi|86167791|gb|EAQ69049.1| Exonuclease [Synechococcus sp. RS9917]
          Length = 261

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 59/189 (31%), Gaps = 29/189 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +I D ET G D   D+  +   +  D    ++   + F      +      A  I 
Sbjct: 30  PRTLLILDTETSGLDPEQDQCLEVGAILFDVPEREVLVQQSFLLPVEHNP-----AQAIN 84

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I    A R      E  R +       +  ++  ++  FD  +                
Sbjct: 85  HI-AASATRCPQPWREGLRYLQALMDTAD--LLVAHHAAFDRQWFGRG------------ 129

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L   RA +  + D I+WP+         ++DLALA+GI     H A AD 
Sbjct: 130 ---------HLPAARAAWLCTMDDIRWPAELQLRPRPSVRDLALAHGIPVWAVHRALADC 180

Query: 182 YATLALVWL 190
                +   
Sbjct: 181 VYIAEVFKR 189


>gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 1461

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 61/478 (12%), Positives = 131/478 (27%), Gaps = 51/478 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V +D ET G         ++  + +    +    T+ F           P    +TGIT
Sbjct: 426 YVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEP---IKPFTENLTGIT 482

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                + G+   E  ++I+   +      + +N               NF          
Sbjct: 483 NAMIEKSGLELKEALQKIYNDLN--GKIALAHNARFD----------FNFLKEKFRQAKI 530

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182
                 ++D +                       KL+D+A   G+E+    AH    D  
Sbjct: 531 EFPNVTVIDTLIVSRIVF----------PQNKKHKLEDVATRVGVEYDPTVAHRGDYDAK 580

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN---KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
               +   + ++  K     ++  N   K+ L        ++ +               L
Sbjct: 581 VLAEVWVALMDELGKKGILTFNQLNSYIKDDLYNKTFSYEVSTIAKNYEGLKEQYGY--L 638

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL---FTSHDELKGLVPVPIKEVH 296
              +  +          +L+        L S  L  RL   +      + +  + + +  
Sbjct: 639 TTALTKNLYNGPKTFMEDLAAH-SENLLLGSGTLKSRLLDVYFYSSHEEFIKELKLYDYI 697

Query: 297 LNKCPILMPIDYCKKEH-FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-- 353
               P +       +    E+  I  K  ++     ++        K +      +    
Sbjct: 698 EVPAPQVFSHWIDNEFITQEQLEISLKEIIKEAIKAKKIVVATADVKYLNLYDKVAYEVL 757

Query: 354 ------QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN 407
                 ++    L++   A      +        E++        D++L E        N
Sbjct: 758 VYAKGIKNSRHYLFNYEQAKNGNIPIPNQDYLTTEEMLEQFAFLKDKQLIE----DIVIN 813

Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
             + +            K  L   + E+   KL  L  E    +  E L   + E ++
Sbjct: 814 NTNKI-ADMCDKIQ-VIKDKLYTPKFEDSGKKLHDLVYETAYKKYGEKLPKIVEERIE 869


>gi|153834777|ref|ZP_01987444.1| gp41 [Vibrio harveyi HY01]
 gi|148868812|gb|EDL67880.1| gp41 [Vibrio harveyi HY01]
          Length = 218

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 61/214 (28%), Gaps = 16/214 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T + +I D ET G         +F  +  D     +                  +A  I 
Sbjct: 17  TENAIIIDTETTGLGSD-AEIVEFTAICADSGKVIVNEL------VKPTCSIPADATAIH 69

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +           FS       +     II YN+  FD         ++   +Y  S
Sbjct: 70  GITNEDVKDAPDFHLVFSNHFLPLLN--GRPIIIYNS-DFDTRLIIQSLDKHCNAAYVQS 126

Query: 122 WDNGNSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAK 178
             +   ++ +    M     F      W    +      L +      ++  +  AH A 
Sbjct: 127 VHDLFFKFCIPQCAMLWYAEFFG---VWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRAL 183

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
           AD   T  L+  +  +         D   K  L 
Sbjct: 184 ADCEMTRRLIHAVNSQIENQNNQNCDSVTKPSLE 217


>gi|56751271|ref|YP_171972.1| hypothetical protein syc1262_c [Synechococcus elongatus PCC 6301]
 gi|81299062|ref|YP_399270.1| exonuclease [Synechococcus elongatus PCC 7942]
 gi|56686230|dbj|BAD79452.1| unknown protein [Synechococcus elongatus PCC 6301]
 gi|81167943|gb|ABB56283.1| Exonuclease [Synechococcus elongatus PCC 7942]
          Length = 256

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 45/181 (24%), Gaps = 24/181 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G      R  +   ++                               TGI
Sbjct: 21  TFTVVDVETTGFKPPQARVIELGILQATLAEGIQFQQAEL---LNPGIPIPEAIAQFTGI 77

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E      +        T I+  +N+ FD  +    + +   D       
Sbjct: 78  TTDLIATADPPE----SVLPPLLPRLQTGILVAHNLPFDYRFLTAEYQQLGLDF------ 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              S  + L  ++       D            S  L  L    G     +H A ADV A
Sbjct: 128 -ERSPTEQLCTVQMSRQLLADL----------PSRSLPQLVQHFGFPVGQSHRAAADVEA 176

Query: 184 T 184
            
Sbjct: 177 C 177


>gi|315658260|ref|ZP_07911132.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           lugdunensis M23590]
 gi|315496589|gb|EFU84912.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           lugdunensis M23590]
          Length = 893

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G  +  D   Q   +   R  + + +          D    P    +T I
Sbjct: 5   SYAVVDLETTGNQLDYDEIIQIG-ITFVRDQKIVGTYHS---MINTDVEIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      E +  +++        +   +N+ FD  + +  F RN          
Sbjct: 61  EEDMLKQAPYFH-EVAEDVYKQLKDS---VFVAHNVSFDLTFIKKAFKRNHI------HF 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++             +        S++L +LA A+ I   NAH A  D   
Sbjct: 111 QPKKVIDTVEL-------------FKIAFPTDKSYQLSELAEAHHIPLDNAHRADEDATT 157

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+    +K   L      
Sbjct: 158 TAKLMIKAFQKFETLPLDTLK 178


>gi|225180860|ref|ZP_03734308.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT
           1]
 gi|225168341|gb|EEG77144.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT
           1]
          Length = 269

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 53/201 (26%), Gaps = 26/201 (12%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++I+D ET G      D     A V +    E  E  ++F                +TGI
Sbjct: 78  YIIFDTETTGFYPYQGDEIINIAAVVI-ENGEIKED-QIFDELVNPHRSIPQAVCDLTGI 135

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                 +  F       ++  +N  FD           F +     + 
Sbjct: 136 TDDMVADK----CGICSVLSDFLDFIGDSVLVAHNAEFDL---------AFLNIKLNWYT 182

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++D  +   A  P             S  L  L   + ++    H A  D   
Sbjct: 183 QTEIYNPVIDTYKLGRALYPQL----------LSHDLDTLIRHHRVKERPRHTALGDSLM 232

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  +     +K  K       
Sbjct: 233 TAEIFLDYLKKLEKEEITTLK 253


>gi|167995093|ref|ZP_02576183.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232195|ref|ZP_02657253.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168239998|ref|ZP_02664930.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261338|ref|ZP_02683311.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465317|ref|ZP_02699199.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819164|ref|ZP_02831164.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445947|ref|YP_002039498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449519|ref|YP_002044248.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194471875|ref|ZP_03077859.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197248793|ref|YP_002145264.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263319|ref|ZP_03163393.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198244203|ref|YP_002214220.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389565|ref|ZP_03216176.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|213419655|ref|ZP_03352721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213428417|ref|ZP_03361167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646369|ref|ZP_03376422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852644|ref|ZP_03382176.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289828784|ref|ZP_06546543.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|194404610|gb|ACF64832.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407823|gb|ACF68042.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458239|gb|EDX47078.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195631798|gb|EDX50318.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197212496|gb|ACH49893.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241574|gb|EDY24194.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197938719|gb|ACH76052.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602010|gb|EDZ00556.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205327163|gb|EDZ13927.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333347|gb|EDZ20111.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339912|gb|EDZ26676.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344083|gb|EDZ30847.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349720|gb|EDZ36351.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|312911229|dbj|BAJ35203.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084513|emb|CBY94305.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224918|gb|EFX49979.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128579|gb|ADX16009.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326621964|gb|EGE28309.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326626623|gb|EGE32966.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 246

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 30/212 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L   V    F+  + +F        +  +N  FD  +    F     D  + 
Sbjct: 69  HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            D      +   +   +  +   +     + Q
Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQ 200


>gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
 gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
          Length = 230

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +   + ++ + + F C    +     EA  + G++
Sbjct: 4   IVLDTETTGLDPVRGDRLVELGCVEI---FNRMPTGQTFHCYINPERDMPQEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F++ + +F        +  +N  FD  +      R            
Sbjct: 61  SEFLADKPL----FAQVVDEFLEFIGDAPLIIHNASFDISFINAELERLKRQVIGRERL- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 116 ----VDTLLIARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 617

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 53/182 (29%), Gaps = 28/182 (15%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     DR    A +       +                P P  V + G+T ++
Sbjct: 22  VDVETSGLVARRDRVLSIAVLTFAPDGTQTGEYTTL---LDPGCDPGP--VHVHGLTAER 76

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                  E + + RI       +  ++  +N +FD  +  + F R               
Sbjct: 77  LRGAPAFE-QVADRIGALL---DGRVMVAHNAQFDYDFLAHEFARARLH----------- 121

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
               L V R +   + +    P          L  LA   G+    AHDA  D      +
Sbjct: 122 ----LPVARRLCTLALNRRVEPPVAG----LSLASLAAYYGVPQTRAHDALDDTRVLAGI 173

Query: 188 VW 189
             
Sbjct: 174 FR 175


>gi|62178830|ref|YP_215247.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224582105|ref|YP_002635903.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62126463|gb|AAX64166.1| DNA polymerase III, epsilon subunit, 3-5 exonucleolytic
           proofreading function [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224466632|gb|ACN44462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713281|gb|EFZ04852.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 246

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 30/212 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L   V    F+  + +F        +  +N  FD  +    F     D  + 
Sbjct: 69  HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            D      +   +   +  +   +     + Q
Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQ 200


>gi|15642231|ref|NP_231864.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586228|ref|ZP_01676018.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
 gi|121726541|ref|ZP_01679790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
 gi|147674786|ref|YP_001217749.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153213799|ref|ZP_01949007.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
 gi|153817083|ref|ZP_01969750.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|153820811|ref|ZP_01973478.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
 gi|227082357|ref|YP_002810908.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2]
 gi|229507692|ref|ZP_04397197.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229512113|ref|ZP_04401592.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229519248|ref|ZP_04408691.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229607196|ref|YP_002877844.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254849364|ref|ZP_05238714.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255747069|ref|ZP_05421014.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262161386|ref|ZP_06030496.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262167744|ref|ZP_06035446.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|298500392|ref|ZP_07010197.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
 gi|9656792|gb|AAF95377.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121549494|gb|EAX59520.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
 gi|121630994|gb|EAX63373.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
 gi|124115723|gb|EAY34543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
 gi|126512351|gb|EAZ74945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|126521603|gb|EAZ78826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
 gi|146316669|gb|ABQ21208.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|227010245|gb|ACP06457.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2]
 gi|227014129|gb|ACP10339.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229343937|gb|EEO08912.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229352078|gb|EEO17019.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229355197|gb|EEO20118.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229369851|gb|ACQ60274.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254845069|gb|EET23483.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255735471|gb|EET90871.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262023809|gb|EEY42508.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262028697|gb|EEY47351.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|297541085|gb|EFH77139.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
          Length = 247

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 53/203 (26%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              V+ D ET G +          R  +   V +    +       F      D     E
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRDIQLE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +          E+     +F        +  +N  FD  +    F      
Sbjct: 67  AIEVHGITDEFLKDKP----EYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFA----- 117

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                   G +     D  +     +     +P          L  L    GI+  H   
Sbjct: 118 ------KLGGAIGKTSDFCKVTDTLAMAKRIFPG-----KRNNLDILCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|329731357|gb|EGG67723.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 784

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q     V    + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIGITFVRNN-QIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAQEIYGKIKD---CIFVAHNVDFDLNFIKKAFKD------YNI 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKKVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|228477577|ref|ZP_04062210.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           salivarius SK126]
 gi|228250721|gb|EEK09919.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           salivarius SK126]
          Length = 828

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 29/204 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           TN + I D E      +     Q   + + +  + I+               D   + +T
Sbjct: 6   TNKYAIVDLEATSAS-STASIIQVG-IVIMQNGQVIDEFAS---DVNPHQELDDHIIHLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +     +E +R I +       CI   +N++FD        +   ++     
Sbjct: 61  GITDQQLAQAP-DFSEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  Y                  +KL  L+    ++   AH A  D 
Sbjct: 112 --LRTPRVDTVELAQVFYPTLEQ-------------YKLSHLSKVLNLDLAQAHTAIEDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYDY 205
            AT  L++ + +K   L     + 
Sbjct: 157 RATGQLLFHLMDKITSLPRQTIEM 180


>gi|260772908|ref|ZP_05881824.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260612047|gb|EEX37250.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 238

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 57/193 (29%), Gaps = 12/193 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G D   D       V    Q   ++  + +  +P      D  +V I GIT
Sbjct: 48  FVAMDFETTGLDENKDEIITIGLVPFTLQRVYLKRAQHWIVRPR--QKLDEGSVIIHGIT 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +       + S       +     I+  +  + +  +    F R   +        
Sbjct: 106 HSDIMHAP----DLSEVFEALLTALEGKIVVAHYHKIEREFLDQAFKRRINEGIE----- 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + +   I      GI    R     S +L       G+   N H A  D  AT
Sbjct: 157 -FPIIDTMQLEAEIQKRLTAGIWNKLRGKKPQSLRLGQARQRYGLPAYNPHHALTDAIAT 215

Query: 185 LALVWLIREKKPK 197
             L+         
Sbjct: 216 AELMQAQIAHHYS 228


>gi|326317571|ref|YP_004235243.1| DNA polymerase III subunit epsilon [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374407|gb|ADX46676.1| DNA polymerase III, epsilon subunit [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 243

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 55/199 (27%), Gaps = 28/199 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT   ++ D ET G      DR  +   V       +  +          +     +A+ 
Sbjct: 1   MTRQ-IVLDTETTGLSAEGGDRIIELGCV---ELLNRKLTGNNLHLYFNPERDSHEDALK 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI+ +         AE    I ++       I   +N  FD  +           ++ 
Sbjct: 57  VHGISNEFLKDKPK-FAEVVDEILEYLQGAEIII---HNAAFDVGFLNKELELTGRPAFT 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                  S  D L + + +Y                    L  L    G+++     H A
Sbjct: 113 ---SYVESVTDTLVMAKEMYPG--------------KRNSLDALCDRLGVDNSGRTLHGA 155

Query: 178 KADVYATLALVWLIREKKP 196
             D      +   +   + 
Sbjct: 156 LLDAELLADVYINLTRGQD 174


>gi|168238647|ref|ZP_02663705.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736138|ref|YP_002113281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204927010|ref|ZP_03218212.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194711640|gb|ACF90861.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288607|gb|EDY27984.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204323675|gb|EDZ08870.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322614544|gb|EFY11473.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620062|gb|EFY16934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623357|gb|EFY20196.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629345|gb|EFY26124.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632065|gb|EFY28819.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637197|gb|EFY33899.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640310|gb|EFY36970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645923|gb|EFY42443.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652378|gb|EFY48732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652582|gb|EFY48932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660392|gb|EFY56628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664545|gb|EFY60738.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669402|gb|EFY65552.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670948|gb|EFY67081.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678813|gb|EFY74868.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681842|gb|EFY77867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687968|gb|EFY83934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194322|gb|EFZ79517.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197738|gb|EFZ82870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203466|gb|EFZ88491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206789|gb|EFZ91742.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213392|gb|EFZ98193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214685|gb|EFZ99436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221462|gb|EGA05878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226220|gb|EGA10436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229992|gb|EGA14112.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233731|gb|EGA17820.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238575|gb|EGA22633.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244263|gb|EGA28272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246424|gb|EGA30407.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252193|gb|EGA36046.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258046|gb|EGA41725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323265129|gb|EGA48628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272692|gb|EGA56099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 246

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 62/218 (28%), Gaps = 30/218 (13%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L   V    F+  + +F        +  +N  FD  +    F     D  + 
Sbjct: 69  HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
            D      +   +   +  +   +     + Q  + I 
Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEETIQ 206


>gi|120611120|ref|YP_970798.1| DNA polymerase III subunit epsilon [Acidovorax citrulli AAC00-1]
 gi|120589584|gb|ABM33024.1| DNA polymerase III, epsilon subunit [Acidovorax citrulli AAC00-1]
          Length = 243

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 55/199 (27%), Gaps = 28/199 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT   ++ D ET G      DR  +   V       +  +          +     +A+ 
Sbjct: 1   MTRQ-IVLDTETTGLSAEGGDRIIELGCV---ELLNRKLTGNNLHLYFNPERDSHEDALK 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI+ +         AE    I ++       I   +N  FD  +           ++ 
Sbjct: 57  VHGISNEFLKDKPK-FAEVVDEILEYLQGAEIII---HNAAFDVGFLNKELELTGRPAFT 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                  S  D L + + +Y                    L  L    G+++     H A
Sbjct: 113 ---SYVESVTDTLVMAKEMYPG--------------KRNSLDALCDRLGVDNSGRTLHGA 155

Query: 178 KADVYATLALVWLIREKKP 196
             D      +   +   + 
Sbjct: 156 LLDAELLADVYINLTRGQD 174


>gi|295695291|ref|YP_003588529.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912]
 gi|295410893|gb|ADG05385.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912]
          Length = 250

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 23/188 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +V++D ET G D   D   +   VRV+    + + T                   ITG+
Sbjct: 57  TYVVFDTETTGFDWRTDALIEIGAVRVENGQVREDQTFSSLIALEPGRRVPEVVRRITGL 116

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+  R           + +F +  +  ++  ++   D  +       N   +  +  +
Sbjct: 117 SEQELWRAPK----VQDVLSRFMAFSSDAVLVAHHAGHDVNFL------NVPLNQFYGIE 166

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   V R +         WP   +    +    L     I  +  H A  D   
Sbjct: 167 LPRRVVDTAQVARRL---------WPDTGEATLDY----LIERMAIPPLTRHRALNDALL 213

Query: 184 TLALVWLI 191
           T  +  + 
Sbjct: 214 TARIWSVF 221


>gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180]
 gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM
           180]
          Length = 240

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 27/198 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G +     R  +   V  VDR          F      +   D EA  + GI
Sbjct: 4   IVLDTETTGLEPREGHRIIEIGCVELVDR--RPTGR--NFHEYLNPERQIDAEAEAVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +           AE + R+ ++       I   +N  FD  +  +  +  +  +      
Sbjct: 60  SNAFLADKPR-FAERAERLVEYLRGAELII---HNAAFDVGFLDHE-FGLWRGAEAPRIA 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADV 181
           +  +  D L + R ++    +G              L  L         H   H A  D 
Sbjct: 115 DLCTVTDSLLMARKLHPGQRNG--------------LDALCKRYAIDNSHRTLHGALLDA 160

Query: 182 YATLALVWLIREKKPKLF 199
                +   +   +  L+
Sbjct: 161 EILADVYLAMTGGQVSLY 178


>gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1467

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 61/478 (12%), Positives = 131/478 (27%), Gaps = 51/478 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V +D ET G         ++  + +    +    T+ F           P    +TGIT
Sbjct: 432 YVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEP---IKPFTENLTGIT 488

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                + G+   E  ++I+   +      + +N               NF          
Sbjct: 489 NAMIEKSGLELKEALQKIYNDLN--GKIALAHNARFD----------FNFLKEKFRQAKI 536

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182
                 ++D +                       KL+D+A   G+E+    AH    D  
Sbjct: 537 EFPNVTVIDTLIVSRIVF----------PQNKKHKLEDVATRVGVEYDPTVAHRGDYDAK 586

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN---KNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
               +   + ++  K     ++  N   K+ L        ++ +               L
Sbjct: 587 VLAEVWVALMDELGKKGILTFNQLNSYIKDDLYNKTFSYEVSTIAKNYEGLKEQYGY--L 644

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL---FTSHDELKGLVPVPIKEVH 296
              +  +          +L+        L S  L  RL   +      + +  + + +  
Sbjct: 645 TTALTKNLYNGPKTFMEDLAAH-SENLLLGSGTLKSRLLDVYFYSSHEEFIKELKLYDYI 703

Query: 297 LNKCPILMPIDYCKKEH-FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-- 353
               P +       +    E+  I  K  ++     ++        K +      +    
Sbjct: 704 EVPAPQVFSHWIDNEFITQEQLEISLKEIIKEAIKAKKIVVATADVKYLNLYDKVAYEVL 763

Query: 354 ------QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN 407
                 ++    L++   A      +        E++        D++L E        N
Sbjct: 764 VYAKGIKNSRHYLFNYEQAKNGNIPIPNQDYLTTEEMLEQFAFLKDKQLIE----DIVIN 819

Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
             + +            K  L   + E+   KL  L  E    +  E L   + E ++
Sbjct: 820 NTNKI-ADMCDKIQ-VIKDKLYTPKFEDSGKKLHDLVYETAYKKYGEKLPKIVEERIE 875


>gi|170722630|ref|YP_001750318.1| DNA polymerase III subunit epsilon [Pseudomonas putida W619]
 gi|169760633|gb|ACA73949.1| DNA polymerase III, epsilon subunit [Pseudomonas putida W619]
          Length = 254

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 31/201 (15%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAV 58
              VI D ET G  V+   R  +   V      E I        F      D   D  A+
Sbjct: 7   KRLVILDTETTGMPVSEGHRIIEIGCV------EVIGRRLTGRHFHVYLQPDRESDEGAI 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT    +       + +    +F        +  +N  FD  +  N F        
Sbjct: 61  NVHGITDAFLVGKPR-FGDVAEEFFEFIQ---GATLVIHNAAFDVGFINNEFALLGQRDR 116

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHD 176
                +  +  D L + RA +    +               L  L     I++     H 
Sbjct: 117 ADISQH-CTILDTLLLARARHPGQRN--------------SLDALCKRYDIDNSGRELHG 161

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D      +   +   +  
Sbjct: 162 ALLDSELLADVYLAMTGGQTS 182


>gi|229590113|ref|YP_002872232.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens SBW25]
 gi|229361979|emb|CAY48879.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens SBW25]
          Length = 248

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 55/195 (28%), Gaps = 25/195 (12%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G  V    R  +   V +            F      D   D  A+ + GIT
Sbjct: 6   VVLDTETTGMPVTDGHRIIEIGCVEL-MGRRLTGRH--FHVYLQPDRDSDEGAIGVHGIT 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE +    +F +     I   +N  FD  +  N F             +
Sbjct: 63  DEFLKGKPR-FAEVADEFFEFINGAQLII---HNAAFDVGFINNEFALMGQTDRADISKH 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
             S  D L + R  +    +               L  L    G+++     H A  D  
Sbjct: 119 -CSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALLDSE 163

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 164 ILADVYLTMTGGQTS 178


>gi|262199242|ref|YP_003270451.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262082589|gb|ACY18558.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 308

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 8/112 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +++D ET G D   D+  +         +   +       +   D   +P A  + GI+
Sbjct: 6   LLVFDVETTGTDRRRDQIIELCVQ-----FGLGDDAPNRVWRIRPDVAIEPAAQEVHGIS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
                       E +  + + F+   T ++GYN   FD    +  + R    
Sbjct: 61  MDDLAECPR-FPEVADELRELFASA-TVLVGYNV-SFDIGMLQAEYERLGQF 109


>gi|729197|sp|P41060|CP81_BP186 RecName: Full=Uncharacterized exonuclease CP81
 gi|3337284|gb|AAC34183.1| Orf81 [Enterobacteria phage 186]
          Length = 194

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 48/183 (26%), Gaps = 20/183 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G         +   +  D          +             EA  I GIT 
Sbjct: 21  IFIDTETTGLG-DDAEIVEICLI--DSAG-----FIMLNTLVKPTKPIPAEATAIHGITD 72

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +  +       +    +   F       + YN         +        +     + N 
Sbjct: 73  EMVMYAP-TWKDIHGAVASLFFEYG--FVIYNADYDTRLIYQTAKLYGLENDGFCYFLNE 129

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYAT 184
            S   ++           +    P R  G    KL D A   G+     AH A AD   T
Sbjct: 130 RSACAMM--------LYAEYRGEPGRFKGYKWHKLVDAAAHEGVSVEGKAHRALADCRMT 181

Query: 185 LAL 187
           L +
Sbjct: 182 LGI 184


>gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
 gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
          Length = 333

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D   +  +           +  P P  V+I G+T
Sbjct: 19  YAVVDVETTGL-ARDDRIVSAAVYRLDALGDVEDHWYTL---VNPERDPGP--VWIHGLT 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   E + ++ +     +  ++  +N  FD       + R            
Sbjct: 73  SEALEGAPL-FPEVAAQLSERL---DGRVLVAHNAAFDWSMLAREYARA----------- 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                    +   +                  + KL+ LA   G+    AH A  D    
Sbjct: 118 --------AITAPVRQRLCTIALSKELRLPLPNHKLESLAAHFGVVQQRAHHALDDARVL 169

Query: 185 LALVW 189
                
Sbjct: 170 AEAFR 174


>gi|58337449|ref|YP_194034.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
 gi|58254766|gb|AAV43003.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
          Length = 927

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++                  V +
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNMKVVKTYSFL---INPHREIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ +   +    +  ++ +I          +   +N+ FD  +      ++ YD+   
Sbjct: 63  TGISNEDVQKQKDFDY-YAPKIVSILQD---TVFVAHNVDFDLPFLNYELTQHGYDAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL     I+H+N H A +D
Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLGDLTSQLKIKHLNPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
            Y T  L+  I +K   L +   +  +
Sbjct: 160 AYGTAVLLIEIIKKLTNLPQATLNTLS 186


>gi|121596441|ref|YP_988337.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
 gi|120608521|gb|ABM44261.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
          Length = 218

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 46/174 (26%), Gaps = 30/174 (17%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             + D+ET G   A   R  + A V +      ++  +             P    +TGI
Sbjct: 6   IAVIDFETTGMMPAQGARATEVAIVLM-EGGRVVDRYQSLM---RTGVRIPPFITQLTGI 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            + +  + +         +  +N  FD  + +                
Sbjct: 62  TNAMVEAAP----DAAAVMREAARFVGDAPMVAHNAAFDRKFWQAELQHAG--------- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
                      + A + F+   +        A S  L  L    G+     AH 
Sbjct: 109 -----------LAAPHPFACTVLLSRRVYPDAPSHSLGRLTDHLGLPRAGRAHR 151


>gi|104782586|ref|YP_609084.1| DNA polymerase III subunit epsilon [Pseudomonas entomophila L48]
 gi|95111573|emb|CAK16293.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudomonas entomophila L48]
          Length = 251

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 55/198 (27%), Gaps = 25/198 (12%)

Query: 3   NHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              VI D ET G  V    R  +   V V            F      D   D  A+ + 
Sbjct: 7   QRLVILDTETTGMPVGDGHRIIEIGCVEV-MGRRLTGRH--FHVYLQPDRESDEGAIGVH 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT    +       + ++   +F        +  +N  FD  +  N F           
Sbjct: 64  GITDAFLVGKPR-FGDVAQEFFEFIE---GATLVIHNAAFDVGFINNEFALLGQHDRADI 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
             +  S  D L + R+ +    +               L  L    GI++     H A  
Sbjct: 120 SQH-CSILDTLMMARSRHPGQRN--------------SLDALCKRYGIDNSGRELHGALL 164

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 165 DSELLADVYLAMTGGQTS 182


>gi|298252322|ref|ZP_06976124.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer
           DSM 44963]
 gi|297545742|gb|EFH79611.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer
           DSM 44963]
          Length = 471

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 21/192 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D + D+  Q      +++ + + S                 A  I GIT  +
Sbjct: 27  FDSETTGLD-SEDQIIQ--WAVCNQEGQLLGS-----GYIKPTVPISEGAFEIHGITEAQ 78

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                +  AE    I    +     ++ YN+         +                   
Sbjct: 79  LANAPL-FAESWPTIRDLLTASGKTVVIYNSNFDIGMLWSSARAH-----------GIPM 126

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKADVYATLA 186
           RWD +    A+  F+    ++       T  KL   ++  N      AH+A+ D  AT  
Sbjct: 127 RWDEIKAECAMQLFASFYGEYHEYWGSYTWQKLTTAISHLNITVPGEAHNAEHDAAATAH 186

Query: 187 LVWLIREKKPKL 198
           ++  + E   K 
Sbjct: 187 IIRQLAELADKE 198


>gi|139439869|ref|ZP_01773234.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC
           25986]
 gi|133774797|gb|EBA38617.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC
           25986]
          Length = 964

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 56/186 (30%), Gaps = 31/186 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G  V  +   + +  R+    E ++  + F        L   E   +T IT 
Sbjct: 39  IVLDTETTGLSVQDNELIEISAARL-SGREVVDRFDTF---VHPKQLIPAEITELTSITN 94

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      E    +  F      C +  +N  FD  +  ++                
Sbjct: 95  ADVADAP-SAVEAVAALADFV---GGCPVIAHNATFDRSFIESVKGGVNVSDIW------ 144

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D L + R                    S KL  +A   G +   +H A ADV A  
Sbjct: 145 ---IDSLALSRIA-------------LPRLASHKLSFMADLFGCD-SVSHRANADVDALC 187

Query: 186 ALVWLI 191
            +  ++
Sbjct: 188 GVWRVL 193


>gi|312883833|ref|ZP_07743552.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368582|gb|EFP96115.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 244

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 58/204 (28%), Gaps = 31/204 (15%)

Query: 2   TNHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
            +  ++ D ET G +          R  +   V +    +       F      D     
Sbjct: 9   QHRIIVLDTETTGMNLEGGPHYQGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDRDIQA 65

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           EAV + GIT +          E+     +F +  N   +  +N  FD  +    F  +  
Sbjct: 66  EAVGVHGITDEFLRDKP----EYKDVHAEFLAFINGAELVAHNASFDVGFMDYEF--SML 119

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVN 173
           D+            D L + + I+                    L  L    GI+  H  
Sbjct: 120 DASIGKTAQYCKVTDTLAMAKKIFPG--------------KRNNLDVLCDRYGIDNSHRT 165

Query: 174 AHDAKADVYATLALVWLIREKKPK 197
            H A  D      +  L+   +  
Sbjct: 166 LHGALLDAEILADVYLLMTGGQTS 189


>gi|254447860|ref|ZP_05061325.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           HTCC5015]
 gi|198262640|gb|EDY86920.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           HTCC5015]
          Length = 238

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 58/189 (30%), Gaps = 14/189 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G +   D+      V  D     + S + +   P +       +V + GIT 
Sbjct: 51  LAIDIETTGLNAERDKIVSIGLVEFDASRVYLASAKHWLVNPGE---LSDSSVIVHGITH 107

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
               R   ++A     I +        +   +    +  + R + +        WS    
Sbjct: 108 SDVSRAPTIDA----VIPELLRAMAGRLSVVHYRAMEREFFRMLGFS------LWSQPWL 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D    +         G     R+    S +L D  L   +     HDA  D  AT 
Sbjct: 158 FPVIDTFA-LETTCLKQSQGWFDRFRNKSLPSLRLPDARLRYHLPEYENHDALVDAIATA 216

Query: 186 ALVWLIREK 194
            L+    +K
Sbjct: 217 ELLQAQIQK 225


>gi|156974590|ref|YP_001445497.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116]
 gi|156526184|gb|ABU71270.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116]
          Length = 217

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 57/204 (27%), Gaps = 16/204 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T + +I D ET G         +F  +  D     +                  EA  I 
Sbjct: 16  TENAIIIDTETTGLGSDT-EIIEFTAICADSGKVIVNEL------VKPTCSIPAEATAIH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +           FS       +     II YN+  FD         ++   +Y  S
Sbjct: 69  GITDEDVKDAPDFHLVFSNYFLPLLN--GRPIIIYNS-DFDTRLIIQSLDKHCNAAYVQS 125

Query: 122 WDNGNSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAK 178
             +   ++ +    M     F           +      L +      ++  +  AH A 
Sbjct: 126 VHDLFFKFCVPQCAMLWYAEFFGVLN---EHHEDYKWQSLTNACAQQQVDVSDLTAHRAL 182

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
           AD   T  L+  +  +        
Sbjct: 183 ADCEMTRRLIHAVNSQIENQNNQS 206


>gi|319404918|emb|CBI78518.1| DNA polymerase III epsilon chain [Bartonella sp. AR 15-3]
          Length = 235

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 65/222 (29%), Gaps = 37/222 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61
           +I+D ET G +   DR  +   +      E I        F         +   E + I 
Sbjct: 4   IIFDTETTGLNKESDRIIEIGCI------EMINRYLTGRRFHVYLNPQGVVIPDEVIAIH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +    +     +    +  F    +   I  +N  FD  +      R         
Sbjct: 58  GLTNEHLKDE-KNFEDIVDALLDFI---DNATIVAHNANFDIGFLNAELGRVNKPLVSSD 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                   D L + R  +   P+               L  L    GI++ +   H A  
Sbjct: 114 N-----VIDTLSIARRRFPMGPN--------------SLDVLCKRFGIDNSHRVLHGALL 154

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           D      +   +   K  +F   +D      +  + D +N+ 
Sbjct: 155 DAEILADVYIELIGGKQGIF--SFDNYENFDVMNVQDSKNVF 194


>gi|291557306|emb|CBL34423.1| CRISPR-associated protein Cas2, E. coli subfamily [Eubacterium
           siraeum V10Sc8a]
          Length = 268

 Score = 80.6 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 30/194 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ + + D ET G +   D   +   V V       E+  V       D       + +T
Sbjct: 102 SDTYTVIDIETTGLNPD-DEIIELGAVTV-ENGSVAETYSVL---VKTDKKIPEAIIRLT 156

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +    +G    + S+ + +F    N   +  +NI FD  + ++    N  D     
Sbjct: 157 GITEELLASEGT---DKSKALSEFAMRCNGKPLVGHNIGFDLNFIKSACAENKIDFV--- 210

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKA 179
               +   D + + R              +     S+ L  +A            H A  
Sbjct: 211 ---PSKIIDTVKISR--------------KLLDINSYSLAAIADYFDLHYNKDRIHRALD 253

Query: 180 DVYATLALVWLIRE 193
           D   T  +   ++E
Sbjct: 254 DCLLTQRIYEKLKE 267


>gi|227904085|ref|ZP_04021890.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|227868104|gb|EEJ75525.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 927

 Score = 80.6 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++                  V +
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNMKVVKTYSFL---INPHREIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ +   +    +  ++ +I          +   +N+ FD  +      ++ YD+   
Sbjct: 63  TGISNEDVQKQKDFDY-YAPKIVSILQD---TVFVAHNVDFDLPFLNYELTQHGYDAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL     I+H+N H A +D
Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLGDLTSQLKIKHLNPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
            Y T  L+  I +K   L +   +  +
Sbjct: 160 AYGTAVLLIEIIKKLTNLPQATLNTLS 186


>gi|149927335|ref|ZP_01915591.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149824049|gb|EDM83272.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 248

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 55/198 (27%), Gaps = 27/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP----ADDYLPDPEAVFIT 61
           +  D+ET G +   D       V +      +  +  +  KP      D +P      I 
Sbjct: 56  LAIDFETTGLNPEYDDIISIGAVPLMSNRIMLGQSRYWILKPAAKLRSDTIP------IH 109

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT            +    + +   + +  +   +                F D+    
Sbjct: 110 GITHSDIANAP----DLIDVLPELLKMMSGKLAVAH---------CAAIETRFLDTALQY 156

Query: 122 WDNGNSRWDLLDVMRAIYAFSPD----GIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                  + ++D M     FS        +   R     S +L D+     +     H+A
Sbjct: 157 RVGEGIVFPVIDTMGIERHFSDHQNSGLFERMFRKSQGASLRLPDIRKRYKLPFYRPHNA 216

Query: 178 KADVYATLALVWLIREKK 195
             D  A   L+    +  
Sbjct: 217 LVDALACAELLQAQIQHH 234


>gi|89094533|ref|ZP_01167472.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Oceanospirillum sp. MED92]
 gi|89081269|gb|EAR60502.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Oceanospirillum sp. MED92]
          Length = 236

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 53/195 (27%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +      +   V     + +  + + +      D   D EA+ + GIT
Sbjct: 4   IVLDTETTGLEPSEGHNIIEIGCV---EMFNRRLTGKTYHQYIKPDRDVDAEAIQVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E      +F       I   +N  FD  +      RN Y         
Sbjct: 61  NEFLEDKPKFH-EVMEEFVEFVRGAELII---HNAAFDIGFLDTELDRNGYPER------ 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVY 182
                         ++   D ++   +        L  L    G    H   H A  D  
Sbjct: 111 -----------MENFSLVTDSLKLARKKHPGQKNNLDALCNRYGINNSHRELHGALLDSE 159

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 160 ILADVYLALTGGQTN 174


>gi|289550764|ref|YP_003471668.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180296|gb|ADC87541.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis
           HKU09-01]
          Length = 893

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G  +  D   Q     V  Q + + +          D    P    +T I
Sbjct: 5   SYAVVDLETTGNQLDYDEIIQIGITFVRGQ-KIVGTYHS---MINTDVEIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      E +  +++        +   +N+ FD  + +  F RN          
Sbjct: 61  EEDMLKQAPYFH-EVAEDVYKQLKDS---VFVAHNVSFDLTFIKKAFKRNHI------HF 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++             +        S++L +LA A+ I   NAH A  D   
Sbjct: 111 QPKKVIDTVEL-------------FKIAFPTDKSYQLSELAEAHHIPLDNAHRADEDATT 157

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+    +K   L      
Sbjct: 158 TAKLMIKAFQKFETLPLDTLK 178


>gi|305667754|ref|YP_003864041.1| putative DNA polymerase III subunit epsilon [Maribacter sp.
           HTCC2170]
 gi|88707591|gb|EAQ99833.1| putative DNA polymerase III epsilon chain [Maribacter sp. HTCC2170]
          Length = 258

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 92/256 (35%), Gaps = 29/256 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T     +D ET G +VA DR  + + ++V     K    E        +     E + I
Sbjct: 5   LTRPICFFDLETTGTNVAHDRIVEISILKVFPNGNK----ESKTWLVNPEKDIPAEVIAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +K   +     E S+ ++      +  + G+N+ RFD         R   D    
Sbjct: 61  HGISNEKVANEP-TFKELSKEVYLMIKDCD--LGGFNSNRFDIPLLAEEMLRADVD---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +D+ +++          ++  + +     +  +DL         +AH A+AD
Sbjct: 114 --------FDMKNMVSVDVQTIFHKMEKRTLEAAYKFYCDKDLT--------DAHSAEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239
             AT  ++    ++ P+L   +      +  +KL+D      +       F   + N   
Sbjct: 158 TNATYEVLLSQLDRYPELENNVKKLAEFSTHKKLVDFAGFIAMDDNEEEVFAFGKHNGKK 217

Query: 240 IA-PVAWHPRYKDSVI 254
           +   +   P Y   ++
Sbjct: 218 VLDVLDKEPGYFGWIL 233


>gi|195938587|ref|ZP_03083969.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           EC4024]
 gi|217324145|ref|ZP_03440229.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|217320366|gb|EEC28790.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|320638235|gb|EFX07963.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           G5101]
 gi|320643619|gb|EFX12763.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str.
           493-89]
 gi|320654630|gb|EFX22631.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660198|gb|EFX27708.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 246

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|257095469|ref|YP_003169110.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047993|gb|ACV37181.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 238

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G +     R  + A V + R          F      D   D  A+ + GI+
Sbjct: 4   IFLDTETTGLEHKFGHRIIEIACVEM-RNRRLTNRH--FHRYLNPDRDIDAGALSVHGIS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  L        F+    +F        +  +N  FD  +                   
Sbjct: 61  REFLLDKPR----FADVAVEFLDFVRGAELVIHNAAFDVGFLNAELALLDMAP------- 109

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                     +  +     D ++            L  L    G++  H   H A  D  
Sbjct: 110 ----------VDTVCHGVCDTLRMAKDLHPGKKNNLNALCERYGVDNSHRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 160 ILAEVYLAMTRGQES 174


>gi|254525958|ref|ZP_05138010.1| exonuclease [Prochlorococcus marinus str. MIT 9202]
 gi|221537382|gb|EEE39835.1| exonuclease [Prochlorococcus marinus str. MIT 9202]
          Length = 259

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 29/191 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              +I D ET G D   D   +   +  D  ++ + S   F     ++     EA  + G
Sbjct: 36  EKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNN-----EAEHVNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+            +      +     +   I  +N+ FD  +                 
Sbjct: 91  IS-ADVTNISQPWEDGLNFFLKLVDYSD--FIVAHNVEFDKKWFGKGR------------ 135

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L  +   +  S + I W  +    +   + DLAL+  I   N H A +D +
Sbjct: 136 ---------LPKLNKKWICSLEDINWSFQKSLKSRPSVTDLALSFSIPVWNLHRALSDCF 186

Query: 183 ATLALVWLIRE 193
               +      
Sbjct: 187 YISEVFKKCDN 197


>gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1]
 gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1]
          Length = 649

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 50/185 (27%), Gaps = 28/185 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G   +  R    A + +                      P P  V I  +TP
Sbjct: 72  VVVDVETSGLRSSTHRVLSVAALALREDGSVERELVTL---LNPGCDPGP--VHIHNLTP 126

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q+       E E +  + +     +   +  +N  FD  +      R             
Sbjct: 127 QRLAGAPRFE-EVANDLLELL---DGRTLVAHNASFDYGFLDAEVRRAGMTMPTRQ---- 178

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
             R   L + R               +    + KL  LA    +    AHDA  D     
Sbjct: 179 --RLCTLALSR-------------RLEIDVPNHKLSTLAAHWKVRQNRAHDAYDDALVLT 223

Query: 186 ALVWL 190
            +   
Sbjct: 224 EVFAH 228


>gi|146309558|ref|YP_001190023.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp]
 gi|145577759|gb|ABP87291.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           ymp]
          Length = 235

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 52/193 (26%), Gaps = 12/193 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G D             V    ++I  +E  +           E+V    IT
Sbjct: 45  LVALDVETTGLDPREHAIVSLG--LVPLNLQRIRCSEARYWVVKPAGELSAESVTFHHIT 102

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         +  + +        ++  +    +  +      R+  +        
Sbjct: 103 HSDIRHAPR----LASVLDELLEALAGKVVVAHYRHIERSFLDQALRRHLGEGLI----- 153

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++   ++           R     S +L D  L  G+   +AH A  D  A 
Sbjct: 154 -FPIIDTMELEARLHPKRRVSWWNRLRGRRPLSIRLADSRLRYGLPLYSAHHALTDALAC 212

Query: 185 LALVWLIREKKPK 197
             L+     K   
Sbjct: 213 GELLQAQVAKHYP 225


>gi|119944269|ref|YP_941949.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
 gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
          Length = 239

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 60/199 (30%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G +         R  +   V V            F      D   DPEA+ +
Sbjct: 10  VVLDTETTGMNKGGTIYVGHRIIEIGCVEV-INRRLTGRH--FHVYVKPDREIDPEAIAV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         ++ +    +F        +  +N  FD  +    F   F +    
Sbjct: 67  HGITDEFLHDKPA-FSDIADEFIEFIKGAE---LVIHNAPFDVGFMDQEFR--FLNKRTK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                ++  D L + R +Y                    L  L    GI++ +   H A 
Sbjct: 121 PTAEISTITDTLVMARKMYPG--------------KRASLDALCRELGIDNKHRVLHGAL 166

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +  L+   + K
Sbjct: 167 LDAEILADVYLLMTGGQKK 185


>gi|299140892|ref|ZP_07034030.1| exonuclease [Prevotella oris C735]
 gi|298577858|gb|EFI49726.1| exonuclease [Prevotella oris C735]
          Length = 286

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 24/198 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    V++D ET G D+  DR  Q + ++V     + E  +                  +
Sbjct: 5   LKKPLVVFDLETTGLDIVNDRIIQLSFIKVCPDGTE-ERGDHL---INPGKHIPDMVSDL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  +K         + S  + + F        G+N+ RFD       F R   D    
Sbjct: 61  TGIDDEKVKDAP-SFKQLSATLAEKFK--GCDFAGFNSNRFDVPMLAEEFLRAGIDFDF- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                           +          +   +    +   +        E   AH A  D
Sbjct: 117 ----------------SKCRLIDAQTIFHKMEKRNLAAAYEFYCGRKMDEDFEAHRADQD 160

Query: 181 VYATLALVWLIREKKPKL 198
             AT  ++    +     
Sbjct: 161 TEATYRVLLGQLDMYSAD 178


>gi|269967099|ref|ZP_06181167.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
 gi|269828358|gb|EEZ82624.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
          Length = 239

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 12/194 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +           V      ++I        K       D ++V I GIT
Sbjct: 49  FVALDFETTGLNPEKHDIITIGLVPF--NLKRIFLRNSRHWKVRPQRALDEDSVIIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + +       + S  + +     +  II  +  R +  +          +   +   +
Sbjct: 107 HSELIDAP----DLSDILSELLPCLSGKIIVVHYRRIEREFLDKALKSRLGEGIEFPVLD 162

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                + +   R+   +     + P       S +L       G+     H A  D  AT
Sbjct: 163 TLHLEETIQQKRSGSLWERLKGKKPE------SVRLAQSRRRYGLPDYTPHHALTDAIAT 216

Query: 185 LALVWLIREKKPKL 198
             L+          
Sbjct: 217 AELLQAQIAHHYSE 230


>gi|313144535|ref|ZP_07806728.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818]
 gi|313129566|gb|EFR47183.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818]
          Length = 254

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 57/192 (29%), Gaps = 29/192 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G         +   +RV +  + +ES E +   P            +TGI 
Sbjct: 73  FVFVDIETNGAKPQSSEIIEIGALRV-KNSQILESFESYVYAP----FVPENITELTGIR 127

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E  R   +F       +   +N+ FD  +      +N           
Sbjct: 128 QEDIQNAPQS-KEVLRAFREFL---GGGVFVAHNVNFDFSFLDYHLRQNGLFGLLN---- 179

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +   +D+ +              +   +  + L  L    GI    +H A AD   +
Sbjct: 180 --PKLCTIDLAK--------------KTILSKRYALSYLNEFLGINTAMSHRAYADALTS 223

Query: 185 LALVWLIREKKP 196
             +  +     P
Sbjct: 224 FRIFEIAISMLP 235


>gi|169832144|ref|YP_001718126.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638988|gb|ACA60494.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 247

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 26/183 (14%)

Query: 5   FVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           FV+ D ET G + A  D       V V +        +VF           P    +TGI
Sbjct: 55  FVVLDTETTGFEPAGGDEVIALGAVVV-KNGRPRPE-QVFHRLVNPGRSIPPLVTALTGI 112

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +        E +    +  F        +  +++ FD  +          +     + 
Sbjct: 113 SDEAVAG----EDDLVAVLPCFLEFLGNDCLAGHHLGFDLEF---------LNLRLREFS 159

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R   LD      A                 F L  +   +GIE    H A  D + 
Sbjct: 160 GAAIRNPALDTAVIARALY----------PALKYFSLDAMLSFHGIEPAGRHTALGDAWL 209

Query: 184 TLA 186
           T  
Sbjct: 210 TAR 212


>gi|161504623|ref|YP_001571735.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865970|gb|ABX22593.1| hypothetical protein SARI_02738 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 246

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 60/212 (28%), Gaps = 30/212 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L   V    F+  + +F        +  +N  FD  +    F     D  + 
Sbjct: 69  HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 125 N--TFCKVTDSLAVARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            D      +   +   +  +   +     + Q
Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAIEGETQRQQ 200


>gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
 gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
          Length = 205

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 60/217 (27%), Gaps = 26/217 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D ET G +   +   + A ++       ++       KP  + +P+     +TGIT
Sbjct: 11  FTIIDIETTGFNPESNDIIEIAAIKYQGN-IILDRFWSLI-KPEIELIPE-HISKLTGIT 67

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +          + +  F +     I+  +NIRFD  +                  N
Sbjct: 68  TAMVIDQPT----VDKVLPDFLNFIENTILVGHNIRFDLAFLNKKAKEIL---------N 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +   +           D            S  L  +A    I     H A  D    
Sbjct: 115 KTIKNPFICTDHLARKILSDID----------SKSLASIAQHFNIPFSRQHRAMYDAEVN 164

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           L +   +         +      K    K ++ +   
Sbjct: 165 LEIFIKMLRFLEDYNVFKVMDIIKLSEGKKVNYREKR 201


>gi|301021445|ref|ZP_07185469.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1]
 gi|300398081|gb|EFJ81619.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1]
          Length = 246

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARRMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILADVYLAMTGGQTSM 188


>gi|212715911|ref|ZP_03324039.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661278|gb|EEB21853.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM
           16992]
          Length = 196

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 24/193 (12%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F++ D ET G  V    R  +   V++    E ++  +                  +TGI
Sbjct: 22  FIVIDTETTGLSVRKGARLIEIGAVKIHND-ELVDEFDQL---INPFEHIPSRITGLTGI 77

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                L    V  E      ++ S  +T ++  +N  FD  +  N     + D       
Sbjct: 78  DDGMLLGKPDV-REVMDEFARWCS--DTAVVMAHNASFDMSFLDNAVQLAYADRD----- 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                       R  + F               + K+  L +   I  +  H A +D   
Sbjct: 130 -----------ARFAHHFVDTLDLSRRLHPEKRTHKVSTLIVDYHIADMEEHRALSDAKQ 178

Query: 184 TLALVWLIREKKP 196
              L   +R++  
Sbjct: 179 EWMLYRAMRDEAE 191


>gi|297571869|ref|YP_003697643.1| exonuclease RNase T and DNA polymerase III [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296932216|gb|ADH93024.1| Exonuclease RNase T and DNA polymerase III [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 228

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 70/207 (33%), Gaps = 19/207 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +   V +D ET G D   +R    + V V+            +           +A  + 
Sbjct: 4   SQPIVGFDTETTGVDPTRERLVTASVVVVEEDG-----VTRHYWLADPGVDIPLQASNVH 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           GI+ ++A R+G    +    +             +   N  +D         R+   +  
Sbjct: 59  GISTEQARREGEPVEKVLGEVADLLVQHMAAGHPVVAFNASYDLTLMECELERHGLPTLA 118

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178
                G     ++D                         +L++LA   G+   ++ H+A+
Sbjct: 119 E--RLGGPVGPVIDPYMLDR---------SVDRYRRGKRRLENLAEHYGVAEDDSFHNAE 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDY 205
           ADV ATL ++  +  + PKL E   ++
Sbjct: 168 ADVLATLRVLGSMLRRFPKLAEDTLEH 194


>gi|182435215|ref|YP_001822934.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326775853|ref|ZP_08235118.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
 gi|178463731|dbj|BAG18251.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326656186|gb|EGE41032.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
          Length = 236

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 61/198 (30%), Gaps = 20/198 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V +D ET G DV  DR    A VR+D      E                 +A  I GI
Sbjct: 7   TLVGFDLETTGTDVENDRIVTAALVRLDADGTVAEQ---RTWLLDPGVAIPEQASAIHGI 63

Query: 64  TPQKALRDG----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
               A R G    V   E +  + +        ++   N R+D         R+   S  
Sbjct: 64  GTDHARRHGARAVVAVEEIAHAVAEVLRSGVPLVVM--NARYDLSLLDRECRRHGLPSVD 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                G     +  ++   +                    LQ L    G+    AH+A A
Sbjct: 122 -ERVGGEPSPVIDPLVIDKHV----------DKYRKGKRALQALCDHYGVALDGAHEASA 170

Query: 180 DVYATLALVWLIREKKPK 197
           D  A + +V  + E+   
Sbjct: 171 DAVAAVRVVRRMGERHRP 188


>gi|327312374|ref|YP_004327811.1| UvrD/REP helicase [Prevotella denticola F0289]
 gi|326945342|gb|AEA21227.1| UvrD/REP helicase [Prevotella denticola F0289]
          Length = 896

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 29/218 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAV 58
            +++D ET G DV  D   + A +R+ R  E +      + +     LP      +P   
Sbjct: 514 IIVFDTETTGLDVFTDDIIEIAAMRI-RGGEIVGEPLDLYIETGKPILPKLGDKENPMYA 572

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
                  + A  + +  AE    + +F +   T  I  +N  +D     N   R      
Sbjct: 573 IYH---EKMAAGELLAPAE---GLCRFLTYIGTRPILGHNASYDYNILNNCLRR---YCN 623

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                +GN  +D L ++R +                  S+KL+ L     +   N+H A 
Sbjct: 624 DTMQAHGNRCFDSLKLIRLLAPSLH-------------SYKLESLLETFRLTGQNSHQAI 670

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
            DV AT++LV L  EK          +    +++   +
Sbjct: 671 DDVGATVSLVRLCAEKARTKQAQQLAFIRHPKVQPFAN 708


>gi|153829952|ref|ZP_01982619.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
 gi|148874587|gb|EDL72722.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
          Length = 247

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 54/203 (26%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              V+ D ET G +          R  +   V +    +       F      D     E
Sbjct: 10  QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRDIQLE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +          E+     +F        +  +N  FD  +    F +    
Sbjct: 67  AIEVHGITDEFLKDKP----EYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFAK--LS 120

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                  +     D L + + I+                    L  L    GI+  H   
Sbjct: 121 GAIGKTSDFCKVTDTLAMAKRIFPG--------------KRNNLDILCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|170021437|ref|YP_001726391.1| DNA polymerase III subunit epsilon [Escherichia coli ATCC 8739]
 gi|253774763|ref|YP_003037594.1| DNA polymerase III subunit epsilon [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|297518674|ref|ZP_06937060.1| DNA polymerase III subunit epsilon [Escherichia coli OP50]
 gi|300905642|ref|ZP_07123388.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1]
 gi|300919145|ref|ZP_07135678.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1]
 gi|300927906|ref|ZP_07143466.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1]
 gi|301305771|ref|ZP_07211857.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1]
 gi|169756365|gb|ACA79064.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 8739]
 gi|253325807|gb|ACT30409.1| DNA polymerase III, epsilon subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|300402534|gb|EFJ86072.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1]
 gi|300413743|gb|EFJ97053.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1]
 gi|300464061|gb|EFK27554.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1]
 gi|300838946|gb|EFK66706.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1]
 gi|315253528|gb|EFU33496.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 85-1]
 gi|323963578|gb|EGB59135.1| DNA polymerase III [Escherichia coli H489]
 gi|323972507|gb|EGB67713.1| DNA polymerase III [Escherichia coli TA007]
          Length = 246

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|260773955|ref|ZP_05882870.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260610916|gb|EEX36120.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 236

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 25/187 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE---STEVFFCKPADDYLPDPEAVFIT 61
           FV +D+ET G +   D       V  D   ++I+   S E+F C P        ++  I 
Sbjct: 52  FVAFDFETSGVNARQDHILSLGWV--DMTLDEIDLAASEELFVCHP---QFITAQSAQIN 106

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITP K L  G+   E   R+  F  +     + + +     +  R +  R   + +   
Sbjct: 107 HITP-KILSAGLTLDEAMDRL--FIRLAGKVALVHGSCIERAFVERYLQQRYGLEQFPCV 163

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W         +D ++     +  G     + D   SF+L D+    G+   +AH A  D 
Sbjct: 164 W---------IDTLQIEKQMTYQG-----QTDIQRSFQLHDVRARYGLPQYSAHSAAMDA 209

Query: 182 YATLALV 188
            AT  L 
Sbjct: 210 LATAELF 216


>gi|149911269|ref|ZP_01899891.1| exonuclease [Moritella sp. PE36]
 gi|149805654|gb|EDM65654.1| exonuclease [Moritella sp. PE36]
          Length = 138

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 9/111 (8%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  +I D+ET G    + DR  +   V++    E     +                   T
Sbjct: 6   DTLIILDFETTGLSPDMGDRAIEIGAVKI-EDGEITGRFQELMY---PGRRVSSFIADYT 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
            IT    +     E E   R   F    N   +  +N  FD  +      R
Sbjct: 62  SITNDMLVDAAPCE-EVMHRFADFIQGYN---LVAHNASFDKRFLDAELTR 108


>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 331

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 51/185 (27%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D + E  +           +  P P  V+I G+T
Sbjct: 22  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTL---VNPERDPGP--VWIHGLT 75

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + ++      +     ++  +N  FD       + R            
Sbjct: 76  SDVLEGAPL-FRDIAQEFSARLADR---VLVAHNAVFDWSMIAREYARA----------- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   +    +                  + KL+ LA   G+    AH A  D    
Sbjct: 121 --------ETEAPVRQRLCTIALSKELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVL 172

Query: 185 LALVW 189
                
Sbjct: 173 AEAFR 177


>gi|192289550|ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           TIE-1]
 gi|192283299|gb|ACE99679.1| Exonuclease RNase T and DNA polymerase III [Rhodopseudomonas
           palustris TIE-1]
          Length = 276

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 32/188 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G D + D   +   V+ D   +   +     F            E   ITGI
Sbjct: 23  IMLDIETTGLDHSTDEIIELGMVKFDYSAEGRILGVRGTFSAFNEPSVPIPREITAITGI 82

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T       G      +  +       +  I+  +N  FD  ++   +             
Sbjct: 83  TDGMVAGHGFDVHAVAAFV------DDAVIVIAHNSGFDRKFAERYW------------- 123

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +    A++    +      G    +L  L    G  H  AH A  D +A
Sbjct: 124 ----------PVFEHRAWACSVTEVDWGAHGFADAQLGYLLNGAGFFH-QAHRAVDDCHA 172

Query: 184 TLALVWLI 191
            L ++   
Sbjct: 173 LLEILDFT 180


>gi|118594819|ref|ZP_01552166.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Methylophilales bacterium HTCC2181]
 gi|118440597|gb|EAV47224.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Methylophilales bacterium HTCC2181]
          Length = 222

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 58/214 (27%), Gaps = 27/214 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G D     R  + A +  +    +  ++  F          D  A  + GIT
Sbjct: 4   IFLDTETTGLDPNQGHRVIEIAAIEFN---NRQATSNRFHFYVNPQREIDAAAQEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    F      F +  N   +  +N  FD  +      +   +        
Sbjct: 61  LDFLNDKPL----FVDIAADFIAFINGSELVIHNAPFDVGFLNMELGKIGME-------- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                     + +      D +++           L  L  A  +++     H A  D  
Sbjct: 109 ---------KLESYCDGIMDSLKFAKEIRPGQRNSLDALCRAFDVDNSTRSLHGALLDAQ 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
               +   +   +        +  +K  L+ +  
Sbjct: 160 LLGEVYIQMTRGQEAFTINFEEDSSKAALQSVDH 193


>gi|15799891|ref|NP_285903.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7
           EDL933]
 gi|15829465|ref|NP_308238.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           Sakai]
 gi|82775601|ref|YP_401948.1| DNA polymerase III subunit epsilon [Shigella dysenteriae Sd197]
 gi|168750163|ref|ZP_02775185.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757208|ref|ZP_02782215.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763423|ref|ZP_02788430.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168776181|ref|ZP_02801188.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782940|ref|ZP_02807947.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789658|ref|ZP_02814665.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168800383|ref|ZP_02825390.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|189403362|ref|ZP_02794985.2| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|208809432|ref|ZP_03251769.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813334|ref|ZP_03254663.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818379|ref|ZP_03258699.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400894|ref|YP_002268818.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|254791342|ref|YP_003076179.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223754|ref|ZP_05938035.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255836|ref|ZP_05948369.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281032|ref|YP_003497850.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|293413470|ref|ZP_06656119.1| DNA polymerase III [Escherichia coli B185]
 gi|309787110|ref|ZP_07681722.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617]
 gi|12512943|gb|AAG54511.1|AE005196_9 DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359667|dbj|BAB33634.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|81239749|gb|ABB60459.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae Sd197]
 gi|187768434|gb|EDU32278.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015573|gb|EDU53695.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999632|gb|EDU68618.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355702|gb|EDU74121.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361034|gb|EDU79453.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366358|gb|EDU84774.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370736|gb|EDU89152.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189377309|gb|EDU95725.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|208729233|gb|EDZ78834.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734611|gb|EDZ83298.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738502|gb|EDZ86184.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162294|gb|ACI39727.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209745474|gb|ACI71044.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745476|gb|ACI71045.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745478|gb|ACI71046.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745480|gb|ACI71047.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|209745482|gb|ACI71048.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|254590742|gb|ACT70103.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|290760905|gb|ADD54866.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|291433528|gb|EFF06501.1| DNA polymerase III [Escherichia coli B185]
 gi|308924688|gb|EFP70183.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617]
 gi|320190264|gb|EFW64914.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           EC1212]
 gi|320650355|gb|EFX18832.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. H
           2687]
 gi|320665449|gb|EFX32511.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338809|gb|EGD62628.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           1044]
 gi|326342399|gb|EGD66179.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
           1125]
          Length = 243

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|168490899|ref|ZP_02715042.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC0288-04]
 gi|221231602|ref|YP_002510754.1| exonuclease [Streptococcus pneumoniae ATCC 700669]
 gi|225854318|ref|YP_002735830.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae JJA]
 gi|183574742|gb|EDT95270.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC0288-04]
 gi|220674062|emb|CAR68575.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669]
 gi|225723482|gb|ACO19335.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae JJA]
          Length = 816

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +   +      ++    
Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K +     L          D  +    L     E +      +  +  ++   
Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPFS 266

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L+       + +        +  E   +L   T +                    + ++ 
Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                   ++            + L   F               L E+   YR ++F
Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|157413038|ref|YP_001483904.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|157387613|gb|ABV50318.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9215]
          Length = 248

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 29/191 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              +I D ET G D   D   +   +  D  ++ + S   F     ++     EA  + G
Sbjct: 25  EKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNN-----EAEQVNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+            +      +     +   I  +N+ FD  +                 
Sbjct: 80  IS-ADVTNISQPWEDGLNFFLKLVDYSD--FIVAHNVEFDKKWFGKGR------------ 124

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L  +   +  S + I W  +        + DLAL+  I   N H A +D +
Sbjct: 125 ---------LPKLNKKWICSLEDINWSFQKSLKNRPSVTDLALSFSIPVWNLHRALSDCF 175

Query: 183 ATLALVWLIRE 193
               +      
Sbjct: 176 YISEVFKKCDN 186


>gi|269963087|ref|ZP_06177423.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832219|gb|EEZ86342.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 217

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 60/215 (27%), Gaps = 16/215 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T + +I D ET G         +F  +  D     +                  +A  I 
Sbjct: 16  TENAIIIDTETTGLGSD-AEIVEFTAICADSGKVIVNEL------VKPTCSIPADATAIH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +           FS       +     II YN+  FD         ++    Y  S
Sbjct: 69  GITNEDVKDAPDFHLVFSNHFLPXLN--GRLIIIYNS-DFDTRLIIQSLDKHCNAVYVQS 125

Query: 122 WDNGNSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAK 178
             +   ++ +    M     F      W    +      L +      ++  +  AH A 
Sbjct: 126 VHDLFFKFCVPQCAMLWYAEFFG---VWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRAL 182

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
           AD   T  L+  +  +         D   K  L  
Sbjct: 183 ADCEMTRRLIHAVNSQIENQNNQNCDSVTKPSLEA 217


>gi|170683943|ref|YP_001742338.1| DNA polymerase III subunit epsilon [Escherichia coli SMS-3-5]
 gi|331651120|ref|ZP_08352145.1| DNA polymerase III, epsilon subunit [Escherichia coli M718]
 gi|331671744|ref|ZP_08372540.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280]
 gi|170521661|gb|ACB19839.1| DNA polymerase III, epsilon subunit [Escherichia coli SMS-3-5]
 gi|281599565|gb|ADA72549.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2002017]
 gi|324111223|gb|EGC05206.1| DNA polymerase III [Escherichia fergusonii B253]
 gi|325496141|gb|EGC94000.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ECD227]
 gi|331050861|gb|EGI22913.1| DNA polymerase III, epsilon subunit [Escherichia coli M718]
 gi|331070733|gb|EGI42092.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280]
          Length = 246

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|260062630|ref|YP_003195710.1| DNA polymerase III subunit epsilon [Robiginitalea biformata
           HTCC2501]
 gi|88784197|gb|EAR15367.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata
           HTCC2501]
          Length = 222

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 64/213 (30%), Gaps = 28/213 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI- 63
           FV+ D ET G     DR      +RV +   +++ +   F K       D  +V I GI 
Sbjct: 34  FVVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFVKQERF---DRASVPIHGIL 90

Query: 64  ---TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
              + ++       E E    +  F        +  ++I FD    +    R+       
Sbjct: 91  RTGSSERV-----TEREALAELLDFT---GQSPVVGHHISFDQAMIQAACQRSGL----- 137

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
               G  R  L+D            +           + L +LA    I   + H A  D
Sbjct: 138 ----GPLRNPLIDT----GLLYGHTLIKSPLLIKKDHYTLDELADKFDISCKDRHTALGD 189

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            Y T      I E              K   RK
Sbjct: 190 AYITAIAFLNILELLRAKRPLTTRDLLKLGSRK 222


>gi|238755084|ref|ZP_04616431.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
 gi|238706644|gb|EEP99014.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
          Length = 254

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 61/212 (28%), Gaps = 30/212 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAYGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +  L      A+ +    +F        +  +N  FD  +         +   + 
Sbjct: 66  HGISDEFLLDKP-TFADIAPEFIEFIRGAE---LVIHNATFDIGFMYYE-----FRMLQQ 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +  N ++   + D +                        L  L     I++     H A 
Sbjct: 117 AIPNTDTFCTITDSLLMARRLF-----------PGKRNNLDALCDRYLIDNTKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            D      +   +   +  L   +   +N++ 
Sbjct: 166 LDAEILSEVYLAMTGGQTSLSFSMEGDQNQSD 197


>gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS]
 gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS]
 gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 330

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 82/295 (27%), Gaps = 38/295 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + V       +S             P P    + G+T +
Sbjct: 19  VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATL---LNPGVDPGP--THVHGLTAE 73

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                     +    + +         +  +N+ FD  +          +         +
Sbjct: 74  MLEGAPR-FGDVVADLAELLR---GRTLVAHNVGFDYSFLTAEAELVGAELPI------D 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
           S    +++ R               D G  + +L+ LA   G+  +  HDA  D      
Sbjct: 124 SVMCTVELAR-------------RLDLGTENLRLETLAAHWGVPQLKPHDALDDAQVLAQ 170

Query: 187 LVW--LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           ++   L R ++ + +        +      +   ++ PL  V+             A + 
Sbjct: 171 ILKPTLARARERRAWLPTRSVSRRRWPNGRVTHDDLHPLRMVAAR--------LPCAYLN 222

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
                    +   +   +         +L +RL T+       V      V  N+
Sbjct: 223 PGRYIAGRPLVKGMRVAVAAEVTRTYEELIERLLTAGLAYTDAVDTETSLVICNQ 277


>gi|288937007|ref|YP_003441066.1| DNA polymerase III subunit epsilon [Klebsiella variicola At-22]
 gi|288891716|gb|ADC60034.1| DNA polymerase III, epsilon subunit [Klebsiella variicola At-22]
          Length = 246

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      A+ +     +        +  +N  FD  +    F +      + 
Sbjct: 69  HGIADEFLLDKP-TFADVADEFMDYIRGAE---LVIHNASFDIGFMDYEFGKLNRGIGKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 125 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +  ++   +  +
Sbjct: 169 LDAQILADVYLMMTGGQTSM 188


>gi|146310412|ref|YP_001175486.1| DNA polymerase III subunit epsilon [Enterobacter sp. 638]
 gi|145317288|gb|ABP59435.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
          Length = 245

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTGR--NFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L        F+    +F    N   +  +N  FD  +     +     +   
Sbjct: 69  HGIADEFLLDKPT----FADVADEFIEYINGAELVIHNASFDIGFMDYE-FSKLNRNIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R +Y                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLALARKMYPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +  L+   +  +
Sbjct: 169 LDAQILADVYLLMTGGQTSM 188


>gi|110677834|ref|YP_680841.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
 gi|109453950|gb|ABG30155.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
          Length = 228

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 54/197 (27%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +      + +   +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFDPESGDRIVEIGAVELMGH---VATGRTYHQYINPERSMPEEAFQVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE  +    F        +  +N  FD  +              W    
Sbjct: 61  DDFLRDKPK-FAEVGQAFLDFIGDAK---LVIHNAAFDIKFLNAELGWINLPKIPWEQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D LD+ R  +  SP                L  L    GI++ +   H A  D  
Sbjct: 116 ----IDTLDIARKRFPGSPA--------------SLDALCRRFGIDNTSRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 158 ILAEVYLELIGGRQPDF 174


>gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 346

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D + +  +           +  P P  V+I G+T
Sbjct: 32  YAVVDVETTGL-ARDDRIISAAVYRLDARGDVEDHWYTL---VNPERDPGP--VWIHGLT 85

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + +  + +  +     ++  +N  FD       + R    +       
Sbjct: 86  SDVLEGAPL-FPQVAAELSERLA---GRVLVAHNAAFDWSMIAREYARAAVTAPVEQ--- 138

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   + + + +                  + KL+ LA   G+   +AH A  D    
Sbjct: 139 ---RLCTIALAKELRL-------------PLPNHKLESLAAHFGVVQQHAHHALDDARVL 182

Query: 185 LALVW 189
                
Sbjct: 183 AEAFR 187


>gi|330446342|ref|ZP_08309994.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490533|dbj|GAA04491.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 249

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 55/197 (27%), Gaps = 24/197 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAV 58
           FV  D+ET G +   D       V          +    +CK +  ++  P      E+V
Sbjct: 59  FVALDFETTGLNANKDDIISVGLVPF--------TIHRIYCKQSQHWVVKPKSKLDEESV 110

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GIT            +  R +          ++  +    +  +     +    +  
Sbjct: 111 IIHGITHSDVQTAP----DLRRILESVLDALAGKVVVVHYKAIERQFMDKALHVRLNEGI 166

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
           +          D L +   I A    G     +     S +L       G+     H A 
Sbjct: 167 Q------FPVVDTLAIEAQIQAQQNSGFWARLKGKKPGSVRLGKCRSRYGLPTYQPHHAL 220

Query: 179 ADVYATLALVWLIREKK 195
            D  AT  L+       
Sbjct: 221 TDALATAELLQAQIAYH 237


>gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
 gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
          Length = 892

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 29/223 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V++D ET G DV  D   + + +++ R  ++I  T   +       LP        GI 
Sbjct: 510 IVVFDTETTGLDVFNDDIIEISAIKI-RNGKQIGKTLDLYIYTDKTILPKL------GIK 562

Query: 65  P---QKALRDGVVEAEFS---RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
                +   + +   E       +++F    +  I+  +NI +D +   N   R   D+ 
Sbjct: 563 DNPLYEIYNEKLNSGELINIKEALNEFLKFADNSILMAHNINYDYHILDNCLRRYTGDNL 622

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                     +D L ++R               +    S+KL+ L     +E VN+H A 
Sbjct: 623 NNYN---FKYFDSLKIIRL-------------LEPSLRSYKLEHLLDKFQLEGVNSHQAI 666

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            DV+AT+ L+    ++   +     ++    Q+ ++I+     
Sbjct: 667 DDVWATVNLINYCAKRVKPIVSQQLNFLKDKQVFRIINKLKAY 709


>gi|188494951|ref|ZP_03002221.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638]
 gi|194438247|ref|ZP_03070339.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1]
 gi|254160329|ref|YP_003043437.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606]
 gi|312970313|ref|ZP_07784494.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70]
 gi|188490150|gb|EDU65253.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638]
 gi|194422911|gb|EDX38906.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1]
 gi|242376045|emb|CAQ30730.1| DNA polymerase III, epsilon subunit, subunit of DNA polymerase III,
           core enzyme and DNA polymerase III, holoenzyme
           [Escherichia coli BL21(DE3)]
 gi|253972230|gb|ACT37901.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606]
 gi|253976439|gb|ACT42109.1| DNA polymerase III subunit epsilon [Escherichia coli BL21(DE3)]
 gi|309700417|emb|CBI99706.1| DNA polymerase III epsilon subunit [Escherichia coli ETEC H10407]
 gi|310336962|gb|EFQ02100.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70]
          Length = 243

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|300312711|ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspirillum seropedicae
           SmR1]
 gi|300075496|gb|ADJ64895.1| DNA polymerase III, epsilon subunit, protein [Herbaspirillum
           seropedicae SmR1]
          Length = 244

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      +R  +   V V    +       F+  P  D   +  A+ + G+T
Sbjct: 4   IILDTETTGLSPRNGNRILEIGCVEV-LNRQLSGKNLHFYINPERDS--EEGALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          + +     +       I   +N  FD  +            +      
Sbjct: 61  TEFLADKP-TFKQIAAEFLDYVRGAQIII---HNAPFDVGFLDAELALLGLPPF------ 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
            +   D++D ++                       L  L    GI   H   H A  D  
Sbjct: 111 KDHVIDVVDSLQMAKELH-----------PGRRNSLDALCDRYGISNAHRVLHGALLDAE 159

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 160 LLAEVYLSMTRGQNS 174


>gi|270156747|ref|ZP_06185404.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
 gi|289164806|ref|YP_003454944.1| DNA polymerase III, epsilon chain [Legionella longbeachae NSW150]
 gi|269988772|gb|EEZ95026.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
 gi|288857979|emb|CBJ11839.1| putative DNA polymerase III, epsilon chain [Legionella longbeachae
           NSW150]
          Length = 233

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 65/213 (30%), Gaps = 29/213 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G       R  +   V  +DR+     +   F        L D  A  + GI
Sbjct: 4   VVLDTETTGIGHEHGHRVIEIGCVELIDRKL----TGNHFHVYLNPQRLVDEGAFRVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +      +  A+ + +  +F S     I   +N  FD  +  +      ++     + 
Sbjct: 60  SNEFLQDKPL-FADVAEKFWRFISGAELII---HNAPFDVGFLNSELQLINWNKKLEVY- 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                 D L + R  Y    +               L  L    GI+H N   H A  D 
Sbjct: 115 --CKITDTLVLAREKYPGQRN--------------SLDALCKRYGIDHFNRELHGALLDA 158

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
                +   +   +  LF  + +       +  
Sbjct: 159 EILAFVYLAMTGGQTSLFAEVEETSLHVNSKSQ 191


>gi|300856800|ref|YP_003781784.1| putative DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436915|gb|ADK16682.1| predicted DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 362

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 65/221 (29%), Gaps = 30/221 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV  D+ET G D   D+  +   V+  +  ++ +                 +   I G
Sbjct: 59  KEFVALDFETTGLDYRNDKIVEIGAVKY-KDEKETDKFHFL---INPHIHIPEKITKING 114

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             E   ++  F        I  +N RFD  +       N Y       
Sbjct: 115 IEDSMVKDSP-SINEVIPKLIDFM---GNLPIVVHNARFDIDFLDENMSDNKYR------ 164

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             GNS  D L + R ++             +   + +LQ +     I+  N+H A  D  
Sbjct: 165 --GNSVIDTLSISRKMF-------------ENIDNHRLQTIKDYLKIDL-NSHRAIDDAK 208

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
               +      +   + +     R +     L       P+
Sbjct: 209 VAAEIYLKYCREGYPIKKDYDKLRKQKNKINLETSFKYDPI 249


>gi|26246159|ref|NP_752198.1| DNA polymerase III subunit epsilon [Escherichia coli CFT073]
 gi|91209283|ref|YP_539269.1| DNA polymerase III subunit epsilon [Escherichia coli UTI89]
 gi|117622497|ref|YP_851410.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1]
 gi|227884794|ref|ZP_04002599.1| DNA polymerase III subunit epsilon [Escherichia coli 83972]
 gi|237707792|ref|ZP_04538273.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA]
 gi|300900029|ref|ZP_07118226.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1]
 gi|300936085|ref|ZP_07151027.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1]
 gi|300988192|ref|ZP_07178593.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1]
 gi|331656205|ref|ZP_08357167.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206]
 gi|331681596|ref|ZP_08382232.1| DNA polymerase III, epsilon subunit [Escherichia coli H299]
 gi|26106556|gb|AAN78742.1|AE016755_242 DNA polymerase III, epsilon chain [Escherichia coli CFT073]
 gi|91070857|gb|ABE05738.1| DNA polymerase III epsilon chain [Escherichia coli UTI89]
 gi|115511621|gb|ABI99695.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1]
 gi|226899002|gb|EEH85261.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA]
 gi|227838235|gb|EEJ48701.1| DNA polymerase III subunit epsilon [Escherichia coli 83972]
 gi|300356434|gb|EFJ72304.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1]
 gi|300407506|gb|EFJ91044.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1]
 gi|300458760|gb|EFK22253.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1]
 gi|307552062|gb|ADN44837.1| DNA polymerase III, epsilon chain [Escherichia coli ABU 83972]
 gi|307628303|gb|ADN72607.1| DNA polymerase III subunit epsilon [Escherichia coli UM146]
 gi|315289701|gb|EFU49094.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 110-3]
 gi|315292140|gb|EFU51492.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 153-1]
 gi|315300178|gb|EFU59415.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 16-3]
 gi|331054453|gb|EGI26462.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206]
 gi|331081170|gb|EGI52332.1| DNA polymerase III, epsilon subunit [Escherichia coli H299]
          Length = 246

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|302519905|ref|ZP_07272247.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302428800|gb|EFL00616.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 270

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 53/192 (27%), Gaps = 9/192 (4%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A         +      +             A  + GIT  +
Sbjct: 12  FDLETSGVDVEADRIVTAAA--YGLGGGEPVEPHDWM--LDPGVEIPAGATAVHGITTDE 67

Query: 68  ALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A   G         I    +        +  +N+ +D         R    +       G
Sbjct: 68  ARAKGEPAPGGIDHISDVLAEYARAGVAVVGHNVPYDFTLLDRECRRYELPTL--HDRLG 125

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            +   ++D  R +   +    + PS+D GA              +   AH A  D     
Sbjct: 126 ETPLYVIDT-RVLDQHADPYRRRPSKDQGARQLVTLAQVYELPWDDEGAHGAAYDAVLAA 184

Query: 186 ALVWLIREKKPK 197
            + + I      
Sbjct: 185 RVAYRIGTLAHM 196


>gi|148992472|ref|ZP_01822167.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|149007688|ref|ZP_01831305.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|168489814|ref|ZP_02714013.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae SP195]
 gi|147760843|gb|EDK67814.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|147928789|gb|EDK79802.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|183571801|gb|EDT92329.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae SP195]
 gi|332077219|gb|EGI87681.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA17545]
          Length = 816

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +   +      ++    
Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K +     L          D  +    L     E +      +  +  ++   
Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVF 266

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L+       + +        +  E   +L   T +                    + ++ 
Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                   ++            + L   F               L E+   YR ++F
Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|148979853|ref|ZP_01815731.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
 gi|145961545|gb|EDK26846.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
          Length = 255

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              V+ D ET G +          R  +   V +    +       F      D     E
Sbjct: 21  KRIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEI-INRKLTGRH--FHVYIKPDRAIQEE 77

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +  +     E +   +  +F        +  +N  FD  +    F +   D
Sbjct: 78  AIGVHGITDEFLVDKP--EYQDIHK--EFLDFIKGAELVAHNAPFDTGFMDYEFEK--LD 131

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                 D+     D LD+ + I+                    L  L    GI+  H   
Sbjct: 132 PTIGKTDDYCKVTDTLDMAKKIFPG--------------KRNNLDILCERYGIDNSHRTL 177

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 178 HGALLDAEILADVYLLMTGGQTS 200


>gi|311280820|ref|YP_003943051.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1]
 gi|308750015|gb|ADO49767.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1]
          Length = 246

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFNV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      A+      ++        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFADVCDEFLEYIRGAE---LVIHNASFDIGFMDYE-FSKLNRGIAK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILADVYLAMTGGQTSM 188


>gi|301050549|ref|ZP_07197422.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1]
 gi|300297757|gb|EFJ54142.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1]
          Length = 246

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 54/204 (26%), Gaps = 30/204 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
            D      +   +   +  +   +
Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAM 192


>gi|225858612|ref|YP_002740122.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae 70585]
 gi|225720171|gb|ACO16025.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae 70585]
          Length = 816

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +   +      ++    
Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K +     L          D  +    L     E +      +  +  ++   
Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVF 266

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L+       + +        +  E   +L   T +                    + ++ 
Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                   ++            + L   F               L E+   YR ++F
Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|206577790|ref|YP_002240302.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342]
 gi|290509928|ref|ZP_06549298.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
 gi|206566848|gb|ACI08624.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342]
 gi|289776644|gb|EFD84642.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
          Length = 243

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      A+ +     +        +  +N  FD  +    F +      + 
Sbjct: 66  HGIADEFLLDKP-TFADVADEFMDYIRGAE---LVIHNASFDIGFMDYEFGKLNRGIGKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +  ++   +  +
Sbjct: 166 LDAQILADVYLMMTGGQTSM 185


>gi|220920098|ref|YP_002495399.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS
           2060]
 gi|219944704|gb|ACL55096.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 223

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 52/183 (28%), Gaps = 19/183 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G D   D     A +R+     +I ++E F           PEA+ +  +  
Sbjct: 32  VALDCETTGLDPRRDEIVAVAAIRIRGD--RILTSESFRATVQSQRPSSPEAIKVHRLLE 89

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            +    G+        + +F     +  +      FD         R             
Sbjct: 90  AEIR-QGMPHDVMLPELLRFI---GSRPVVGYYTDFDVGMVDKYARRILR------IRLP 139

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           N R D+        A         + D          +A   G+  +  HDA  D   T 
Sbjct: 140 NPRIDV-------SALYYACKYRDAPDYVKIDLSFARIAADLGLPALPQHDAFNDALMTA 192

Query: 186 ALV 188
            + 
Sbjct: 193 MMY 195


>gi|328468890|gb|EGF39850.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 248

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 24/197 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
           FV  D+ET G +   D       V        I+  +           +   + E+V I 
Sbjct: 58  FVSVDFETTGLNAEDDAILTIGLVPF-----TIDRVQCSGSAHWIVNPNRELNEESVVIH 112

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +         +    I    +     ++ +               R F+ +   +
Sbjct: 113 GITDSEVKNAPQ-LTQILGEILDALA--GKVVLVH----------YKNIERQFFYNALLN 159

Query: 122 WDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAK 178
                 ++ ++D +   YA         W         S +L       G+     H A 
Sbjct: 160 TIGEGIQFPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLPAYQPHHAL 219

Query: 179 ADVYATLALVWLIREKK 195
            D  AT  L     +  
Sbjct: 220 TDALATAELFQAQLQYH 236


>gi|294340001|emb|CAZ88365.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As]
          Length = 239

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 58/200 (29%), Gaps = 27/200 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + A  DR  + AGV +             +     D    P+A+ + G+T
Sbjct: 5   IVLDTETTGLNPASGDRIIEVAGVEL-FNRRLTGKHYHAY--LNPDRASHPDALKVHGLT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+ +  + +F       I   +N  FD  +      R    ++      
Sbjct: 62  EEFLSDKPR-FAQIADDLLEFVRDAEIII---HNAPFDCAFLDAELERLNRPAF------ 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                      +       D +             L  L    GI+  H   H A  D  
Sbjct: 112 -----------KQHVPLVTDTLAMAKLQFPGKFNNLDALCKRFGIDNAHRTLHGALLDAE 160

Query: 183 ATLALVWLIREKKPKLFEYL 202
               +   +   +  L   L
Sbjct: 161 LLAEVYLSLTRGQESLVIDL 180


>gi|319952129|ref|YP_004163396.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319420789|gb|ADV47898.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 457

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 30/210 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G  +  ++  + +  + D  ++ IE           +         +TGI 
Sbjct: 2   YTIIDIETTGNGIQGNKITEISIFKYD-GYDVIEEFTTL---INPEAEIPYFITGLTGID 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      +E + +I +        I   +N+ FD    ++ F     D  R     
Sbjct: 58  NTMVRNAPK-FSEVADQILKITEE---TIFVAHNVSFDYNIIKHEFKAIGVDFIRQK--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L  L  A  I   + H A+ D  AT
Sbjct: 111 -------LCTVRLSRKLF----------PGYNSYSLGKLCTALKIPLTDRHRARGDAEAT 153

Query: 185 LALVWLIREKK--PKLFEYLYDYRNKNQLR 212
             L   +       ++F+   + R++    
Sbjct: 154 TILFEKLLRVDATGEVFKSFLNARSQEATL 183


>gi|221069684|ref|ZP_03545789.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
 gi|220714707|gb|EED70075.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
          Length = 213

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 30/178 (16%)

Query: 1   MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+    + D+ET G   A   R  + A V +  Q   ++  +             P    
Sbjct: 1   MSAAIAVIDFETTGMTPAQGARATEVAIVLL-EQGRVVDRFQSLMQA---GAWVSPFITE 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT           AE  R   +F        +  +N  FD  + +            
Sbjct: 57  LTGITNAMLRTAP-PAAEVMRDAARFV---GGAPMVAHNASFDSKFWQAEL--------- 103

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176
                       L    A   F+   +        A S  L +LA          AH 
Sbjct: 104 -----------ALAGEAAPQLFACTVLLSRRIYPQAPSHSLGNLARYLHLPSTGRAHR 150


>gi|262044050|ref|ZP_06017130.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330005755|ref|ZP_08305367.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
 gi|259038622|gb|EEW39813.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328536123|gb|EGF62511.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
          Length = 246

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      A+ +     +        +  +N  FD  +    F +      + 
Sbjct: 69  HGIADEFLLDKP-TFADVADEFMDYIRGAE---LVIHNASFDIGFMDYEFSKLNRGIGKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 125 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +  ++   +  +
Sbjct: 169 LDAQILADVYLMMTGGQTSM 188


>gi|72160587|ref|YP_288244.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX]
 gi|71914319|gb|AAZ54221.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 250

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 19/172 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G ++  DR    A +       +                  PEAV I GI+ + 
Sbjct: 19  FDIETTGINLEQDRVVTAAIIETAADGSQRTR---RTWLVNPGVEIPPEAVAIHGISTEL 75

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A+ DG+        I           T ++  N   FD         R            
Sbjct: 76  AVADGIPAPVAVAEITDLLEQVLQSGTPLVIMNAP-FDLTILDRECRRYGVVPLS----- 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              R D +  +           ++           L+ L    G+ +  +H+
Sbjct: 130 --ERLDTVAPVIDPLILDRHIDRY-----RRGKRTLEALCAHYGVPYDGSHE 174


>gi|307709092|ref|ZP_07645551.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK564]
 gi|307620038|gb|EFN99155.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK564]
          Length = 816

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    + ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGKIVDHYST---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPEMEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +REK  +L + L +
Sbjct: 157 ATAELLLFLREKIAQLPKGLLE 178


>gi|260909505|ref|ZP_05916208.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636353|gb|EEX54340.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 900

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 31/217 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFC--KPAD---DYLPDP 55
           T   V++D ET G +V  D   Q A V++        S   VF    +P       +P+P
Sbjct: 514 TEEIVVFDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFIKTERPIPAMLGDIPNP 573

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
                  I  +      +     ++ +  F       ++  +N  FD    R    R   
Sbjct: 574 -------IVAELQRNTCLP---AAQALQDFMQYVGDSVLLAHNADFDYNILRFNLQR--- 620

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                           +D+      +            G   +KL+ L     +E  N+H
Sbjct: 621 ------------YCPSIDLHATHPTYFDSLKIIRLLQPGLKQYKLKALLEVLHLEGTNSH 668

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
            A  DV AT++LV   R+K  ++      +  + +++
Sbjct: 669 LADEDVQATVSLVGYCRQKAAEMIPAQQQFLARQRVQ 705


>gi|110640430|ref|YP_668158.1| DNA polymerase III subunit epsilon [Escherichia coli 536]
 gi|300990975|ref|ZP_07179425.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1]
 gi|306813365|ref|ZP_07447558.1| DNA polymerase III subunit epsilon [Escherichia coli NC101]
 gi|110342022|gb|ABG68259.1| DNA polymerase III, epsilon chain [Escherichia coli 536]
 gi|300305641|gb|EFJ60161.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1]
 gi|305854128|gb|EFM54567.1| DNA polymerase III subunit epsilon [Escherichia coli NC101]
 gi|324009120|gb|EGB78339.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 57-2]
 gi|324011829|gb|EGB81048.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 60-1]
          Length = 246

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNATFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|303258008|ref|ZP_07344017.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|330999422|ref|ZP_08323136.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|302859351|gb|EFL82433.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|329574848|gb|EGG56407.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 196

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 7/114 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G   A DR  +   + VD  + +I+S   F                I G+  
Sbjct: 25  IFLDTETTGMSQATDRIVEVCAIEVDDDFNEIDSFHAF---INPQRKVPWFVTRIHGLNN 81

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +       + ++  R +  F           +N+ FD       F RN   +  
Sbjct: 82  EFLDDKP-IFSDIGRDLLLFLEGSELW---AHNMSFDAGMLNAEFARNRLPTLE 131


>gi|91227218|ref|ZP_01261677.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|91188746|gb|EAS75034.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
          Length = 239

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 55/194 (28%), Gaps = 12/194 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +           V      ++I        K       D ++V I GIT
Sbjct: 49  FVALDFETTGLNPEKHDIITIGLVPF--NLKRIFLRNSRHWKVRPQRALDEDSVIIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + +       +    + +     +  II  +  R +  +          +   +   +
Sbjct: 107 HSELIDAP----DLGDILSELLPCLSGKIIVVHYRRIEREFLDKALKSRLGEGIEFPVLD 162

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                + +   R+   +     + P       S +L       G+     H A  D  AT
Sbjct: 163 TLHLEETIQQKRSGSLWERLKGKKPE------SVRLAQSRRRYGLPDYTPHHALTDAIAT 216

Query: 185 LALVWLIREKKPKL 198
             L+          
Sbjct: 217 AELLQAQIAHHYSE 230


>gi|30061767|ref|NP_835938.1| DNA polymerase III subunit epsilon [Shigella flexneri 2a str.
           2457T]
 gi|56479626|ref|NP_706156.2| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 301]
 gi|218547665|ref|YP_002381456.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ATCC
           35469]
 gi|30040009|gb|AAP15743.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
           2457T]
 gi|56383177|gb|AAN41863.2| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 301]
 gi|218355206|emb|CAQ87813.1| DNA polymerase III epsilon subunit [Escherichia fergusonii ATCC
           35469]
 gi|313646728|gb|EFS11187.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
           2457T]
 gi|332754119|gb|EGJ84489.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2747-71]
 gi|332761998|gb|EGJ92270.1| DNA polymerase III, epsilon subunit [Shigella flexneri 4343-70]
 gi|332764639|gb|EGJ94869.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-671]
 gi|332768614|gb|EGJ98795.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2930-71]
 gi|333009688|gb|EGK29138.1| DNA polymerase III, epsilon subunit [Shigella flexneri VA-6]
 gi|333010755|gb|EGK30181.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-272]
 gi|333021254|gb|EGK40507.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-227]
 gi|333022178|gb|EGK41418.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-304]
          Length = 243

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 330

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 79/284 (27%), Gaps = 38/284 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D + E  +     +     +  P P  V+I G+T
Sbjct: 23  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHW---YTMVNPERDPGP--VWIHGLT 76

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   + +    +F +     ++  +N  FD       + R   +        
Sbjct: 77  SEALEGAPL-FQDIAE---EFTTRLEGRVLVAHNAVFDWQMIAREYARAQREVP------ 126

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                        +                  + KL+ LA   G+    AH A  D    
Sbjct: 127 -------------VRQRLCTIALSKELGLPLPNHKLESLAAHYGVVQRRAHHALDDARVL 173

Query: 185 LALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA- 241
                              L + R           +  TP +     +G  R  +   + 
Sbjct: 174 AEAFQPSLRAAAAGGVRLPLLECR----PLTEWSDRPATPRIGQQAGYGGYRPTSWRPSR 229

Query: 242 --PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283
             P   +P       G  L   MRV    D+    + L     +
Sbjct: 230 KRPACPYPNPGRYEPGGRLKQGMRVAFSGDTSTERELLEDRATD 273


>gi|331645384|ref|ZP_08346488.1| DNA polymerase III, epsilon subunit [Escherichia coli M605]
 gi|331045546|gb|EGI17672.1| DNA polymerase III, epsilon subunit [Escherichia coli M605]
          Length = 246

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|295096912|emb|CBK86002.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 246

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 58/208 (27%), Gaps = 30/208 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      A+ +     +        +  +N  FD  +    F +   D  + 
Sbjct: 69  HGIADEFLLNKP-TFADVADEFLDYIRGAE---LVIHNASFDIGFMDYEFSKLNRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYR 206
            D      +   +   +  +   + +  
Sbjct: 169 LDAQILADVYLTMTGGQTSMKFSMENES 196


>gi|163801804|ref|ZP_02195701.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
 gi|159174312|gb|EDP59116.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
          Length = 238

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 73/247 (29%), Gaps = 32/247 (12%)

Query: 3   NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           N  ++ D ET G ++         R  +   V +    +       F      D    PE
Sbjct: 10  NRIIVLDTETTGMNLEGGPHYMGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQPE 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +  +       ++S    +F        +  +N  FD  +    F     D
Sbjct: 67  AIGVHGITDEFLVDKP----DYSHVHQEFLDFIKGAELVAHNAPFDTGFMDYEFE--MLD 120

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                 D+     D L + + I+                    L  L    GI+  H   
Sbjct: 121 PAIGKTDDFCKVTDTLAMAKKIFPG--------------KRNNLDILCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
           H A  D      +  L+   +    F           +R++   + +  L   +    A 
Sbjct: 167 HGALLDAEILADVYLLMTGGQTSLEFNANKKNGEPEGIRRVQGRKALKVLRATADEVEAH 226

Query: 234 RSNTALI 240
           +    L+
Sbjct: 227 QKRLELV 233


>gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS]
 gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
          Length = 330

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 84/295 (28%), Gaps = 38/295 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + V       +S             P P    + G+T +
Sbjct: 19  VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATL---LNPGVDPGP--THVHGLTAE 73

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                     +    + +         +  +N+ FD  +          +         +
Sbjct: 74  MLEGAPR-FGDIVADLAELLR---GRTLVAHNVGFDYSFLTAEAELVGAELPI------D 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
           S    +++ R               D G  + +L+ LA   G+  +  HDA  D      
Sbjct: 124 SVMCTVELAR-------------RLDLGTENLRLETLAAHWGVPQLKPHDALDDAQVLAQ 170

Query: 187 LVW--LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           ++   L R ++ + +        +      +   ++ PL  V+       +       +A
Sbjct: 171 ILKPTLARARERRAWLPTRSVSRRRWPNGRVTHDDLHPLRMVAARLP--CAYLNPGRFIA 228

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
             P      +   +   +         +L +RL T+       V      V  N+
Sbjct: 229 GRP------LVKGMRVAVAAEVTRTYEELIERLLTAGLAYTDAVDTETSLVICNQ 277


>gi|300949353|ref|ZP_07163365.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1]
 gi|300958303|ref|ZP_07170446.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1]
 gi|301029642|ref|ZP_07192704.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1]
 gi|301645470|ref|ZP_07245407.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1]
 gi|307136810|ref|ZP_07496166.1| DNA polymerase III subunit epsilon [Escherichia coli H736]
 gi|331640665|ref|ZP_08341812.1| DNA polymerase III, epsilon subunit [Escherichia coli H736]
 gi|1552785|gb|AAB08637.1| DNA polymerase III epsilon chain [Escherichia coli]
 gi|260450588|gb|ACX41010.1| DNA polymerase III, epsilon subunit [Escherichia coli DH1]
 gi|299877469|gb|EFI85680.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1]
 gi|300315009|gb|EFJ64793.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1]
 gi|300451236|gb|EFK14856.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1]
 gi|301076259|gb|EFK91065.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1]
 gi|331040039|gb|EGI12247.1| DNA polymerase III, epsilon subunit [Escherichia coli H736]
          Length = 246

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|193063208|ref|ZP_03044299.1| DNA polymerase III, epsilon subunit [Escherichia coli E22]
 gi|256020181|ref|ZP_05434046.1| DNA polymerase III subunit epsilon [Shigella sp. D9]
 gi|300819828|ref|ZP_07100014.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1]
 gi|300823399|ref|ZP_07103529.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7]
 gi|300926565|ref|ZP_07142351.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1]
 gi|301326098|ref|ZP_07219494.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1]
 gi|307314695|ref|ZP_07594293.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
 gi|309797929|ref|ZP_07692309.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7]
 gi|331666456|ref|ZP_08367336.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271]
 gi|331675873|ref|ZP_08376590.1| DNA polymerase III, epsilon subunit [Escherichia coli H591]
 gi|192931116|gb|EDV83719.1| DNA polymerase III, epsilon subunit [Escherichia coli E22]
 gi|300417423|gb|EFK00734.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1]
 gi|300524017|gb|EFK45086.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7]
 gi|300527586|gb|EFK48648.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1]
 gi|300847158|gb|EFK74918.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1]
 gi|306905814|gb|EFN36339.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
 gi|308118469|gb|EFO55731.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7]
 gi|315059428|gb|ADT73755.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
 gi|320173695|gb|EFW48884.1| DNA polymerase III epsilon subunit [Shigella dysenteriae CDC
           74-1112]
 gi|320179852|gb|EFW54798.1| DNA polymerase III epsilon subunit [Shigella boydii ATCC 9905]
 gi|323380013|gb|ADX52281.1| DNA polymerase III, epsilon subunit [Escherichia coli KO11]
 gi|323945583|gb|EGB41633.1| DNA polymerase III [Escherichia coli H120]
 gi|324020673|gb|EGB89892.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 117-3]
 gi|331066301|gb|EGI38179.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271]
 gi|331076433|gb|EGI47710.1| DNA polymerase III, epsilon subunit [Escherichia coli H591]
          Length = 246

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|332520671|ref|ZP_08397133.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332044024|gb|EGI80219.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 444

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 75/253 (29%), Gaps = 35/253 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G     +R  + +  +     + I+           +         +TGI 
Sbjct: 3   YTIIDVETSG---RTNRITEISIFKYHEN-KIIDEFTSL---VNPNCYIPEHITALTGID 55

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      +E + ++ +       CI   +N+ FD    R  F R   D  R     
Sbjct: 56  NNTVANAPE-FSEIANKVLEITKD---CIFVAHNVNFDYNVIRKEFKRLEIDFTRKK--- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L  L     I     H A+ D  AT
Sbjct: 109 -------LCTVRLSRKLL----------PGHRSYSLGKLCKDLNICINGRHRARGDAEAT 151

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH---VSGMFGASRSNTALIA 241
           + L   + + +    E    + NKN  +  +     + + +    S      ++    + 
Sbjct: 152 VILFKKL-QAQENAKEIFLKFLNKNSKQATLPPNLPSEVFNNLPNSTGIYFFKNKKGKVV 210

Query: 242 PVAWHPRYKDSVI 254
            V      K  V+
Sbjct: 211 YVGKAKDIKKRVL 223


>gi|330939732|gb|EGH43019.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 259

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 56/198 (28%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           V+ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  VVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N  +       R  
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                S  D L + R  +    +               L  L    G+++     H A  
Sbjct: 120 ITQHCSVLDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|298244072|ref|ZP_06967878.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551553|gb|EFH85418.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 1009

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 33/217 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G     D   + A ++  +  E +++ E F                +TGI P
Sbjct: 9   IALDLETTGLHAEQDAILEVAAIKF-QGSEVLDTFETFIS---PGRSIPYRVQRLTGIKP 64

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +  +         SR++H F        I  ++I FD  + R     +            
Sbjct: 65  ELLVGAP-PFDAISRQLHTFL---GDYPIVGHSIPFDVGFLRRWGLAHSNPM-------- 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYAT 184
               D  ++                     +S+ L  +A + GI+   + H A  D    
Sbjct: 113 ---VDTFELA-------------TVLLPSLSSYNLGQVAHSLGIQVPSDRHRAMVDTVLA 156

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           + +   + E+   +   L     +    +   + +  
Sbjct: 157 MQVFLSLYERLQTVDLALLQDLARLDAPRSWPLLHFF 193


>gi|291279025|ref|YP_003495860.1| hypothetical protein DEFDS_0623 [Deferribacter desulfuricans SSM1]
 gi|290753727|dbj|BAI80104.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 247

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 26/198 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G D    +    A V+V   ++ ++  +VF      +     E++   GI
Sbjct: 62  KFCVIDTETTGLDFETAKLINIAAVKV-VNFKILDIYDVF---INPEIPIPEESIKWHGI 117

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              +  +  F       +I  +++ FD           +    +  W 
Sbjct: 118 TDDMVKDKPT----VAEILPDFLKFIRDSVIVGHHVNFDLKMINKDLKLYYGSEIKNIWI 173

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +    +    + R  +                    L  L     ++ +  H A  D  A
Sbjct: 174 DTMFLYSKNILCRDDHI------------------SLDFLLEKFNVKCIGRHTALGDALA 215

Query: 184 TLALVWLIREKKPKLFEY 201
           T  +   I  K    F+ 
Sbjct: 216 TAEVFNKIVVKMKNGFKT 233


>gi|237746089|ref|ZP_04576569.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS]
 gi|229377440|gb|EEO27531.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS]
          Length = 248

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 55/214 (25%), Gaps = 27/214 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G      DR  +   V V       +     +  P  D    P+A+ + G+T
Sbjct: 4   IVLDTETTGLYANDGDRIIEIGCVEV-LNRRVTDHHFHQYINPERDS--HPDALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE ++    F        +  +N  FD  +      R            
Sbjct: 61  TEFLSDKPK-FAEIAQAFCDFIKGAE---LVIHNAPFDVGFLNAELARLNLPP------- 109

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                     +  + +   D +             L  L     I+  H   H A  D  
Sbjct: 110 ----------VEELASCITDSLLKARDMFPGRRNSLDALCERFEIDNTHRTLHGALLDAE 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
               +   +   +  L           +  +   
Sbjct: 160 LLAEVYLAMTRGQETLEIEKLTLSAAEEEARKNH 193


>gi|110804261|ref|YP_687782.1| DNA polymerase III subunit epsilon [Shigella flexneri 5 str. 8401]
 gi|110613809|gb|ABF02476.1| DNA polymerase III, epsilon subunit [Shigella flexneri 5 str. 8401]
          Length = 246

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLVVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|72161118|ref|YP_288775.1| exonuclease [Thermobifida fusca YX]
 gi|71914850|gb|AAZ54752.1| exonuclease [Thermobifida fusca YX]
          Length = 516

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 10/114 (8%)

Query: 4   HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + + D ET G +     R  + A VR+      ++        P              G
Sbjct: 20  TYAVLDLETTGLNPKRGARVCEIAVVRMRGDGTVLDEYSTL-VNPGSSIRNSAF----HG 74

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           IT            + +  +  +    +  I+  + + F++ +    F R    
Sbjct: 75  ITDTWVKTAP-SFDQVAGDLLAYL---DGAIVVGHKLDFEEKFLAAEFARLGVP 124


>gi|153835770|ref|ZP_01988437.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01]
 gi|156975479|ref|YP_001446386.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|148867537|gb|EDL66875.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01]
 gi|156527073|gb|ABU72159.1| hypothetical protein VIBHAR_03210 [Vibrio harveyi ATCC BAA-1116]
          Length = 238

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           N  V+ D ET G ++         R  +   V +    +       F      D    P+
Sbjct: 10  NRIVVLDTETTGMNLEGGPHYMGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDREIQPD 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +  +       E+S    +F        +  +N  FD  +    F     +
Sbjct: 67  AIGVHGITDEFLVDKP----EYSAVHQEFLDFIKGAELVAHNAPFDTGFMDYEFE--MLN 120

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                 D+     D L + + I+                    L  L    GI+  H   
Sbjct: 121 PSIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|319775991|ref|YP_004138479.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3047]
 gi|329123857|ref|ZP_08252414.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|317450582|emb|CBY86799.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3047]
 gi|327468820|gb|EGF14294.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 256

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 61/202 (30%), Gaps = 31/202 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G           R  +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMSQLGAHYEGHRIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          EF      F    N   +  +N  FD  +    F++   +    
Sbjct: 65  HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFHKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFE 200
            D      +  ++   +  LF+
Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185


>gi|218514224|ref|ZP_03511064.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
          Length = 312

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 60/217 (27%), Gaps = 32/217 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G +   D   +   V    D      +   ++            E   +TGI
Sbjct: 61  VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPREVTRLTGI 120

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +      R +          +I  +N  FD  +                  
Sbjct: 121 TDAMVEGQVID----IRSLSDLIE--PADLIIAHNAGFDRPFCEA--------------- 159

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +    A++    +      G    KL  L    G  H   H A  D +A
Sbjct: 160 --------FSPLFTGKAWACSVSEIDWSARGFEGTKLGYLVGQAGYFHEG-HRAVDDCHA 210

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
            L ++   + +    F  LY    ++++R   +    
Sbjct: 211 LLEILDRQQGEGESPFAELYRASQRSRIRIFAEHSPF 247


>gi|152968805|ref|YP_001333914.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953654|gb|ABR75684.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 243

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      A+ +     +        +  +N  FD  +    F +      + 
Sbjct: 66  HGIADEFLLDKP-TFADVADEFMDYIRGAE---LVIHNASFDIGFMDYEFSKLNRGIGKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +  ++   +  +
Sbjct: 166 LDAQILADVYLMMTGGQTSM 185


>gi|307132179|ref|YP_003884195.1| DNA polymerase III subunit epsilon [Dickeya dadantii 3937]
 gi|306529708|gb|ADM99638.1| DNA polymerase III epsilon subunit [Dickeya dadantii 3937]
          Length = 244

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 52/199 (26%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYLRPDRLVDPEAYNV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +          +       F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGISDEFLADKP-TYGDVVDDFLDFIRGAE---LVIHNATFDIGFMDYEFRLLKRDIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCTITDSLQMARRLFPG--------------KRNNLDALCDRYQIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +   +   +  
Sbjct: 166 LDAEILAEVYLAMTGGQTS 184


>gi|262274601|ref|ZP_06052412.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262221164|gb|EEY72478.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 245

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 53/190 (27%), Gaps = 12/190 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G D + +       V            + +  KP      + E+V   GIT
Sbjct: 55  FVALDLETTGLDPSQNDIISIGLVPFTLDRIYCRDAKHWIVKPR--RPLEAESVVFHGIT 112

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +  R + +  +     I+  +  R +  +          +S       
Sbjct: 113 HSDVSDAP----DLRRILEEVLASLEGKIVVAHYRRIERDFLEAAVESRLGESLL----- 163

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L++    Y                TS +L D      +     H+A  D  AT
Sbjct: 164 -FPVVDTLEIESWYYRKPIQKFWSYVLKKPLTSIRLADSRRRYNLPFYQGHNALTDAIAT 222

Query: 185 LALVWLIREK 194
             L+      
Sbjct: 223 AELLQAQIAH 232


>gi|127513039|ref|YP_001094236.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
 gi|126638334|gb|ABO23977.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
          Length = 242

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 61/201 (30%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           VI D ET G +          R  +   V V    +       F          D EA+ 
Sbjct: 11  VILDTETTGMNQGAGAVYFGHRIIEIGCVEV-INRKLTGRH--FHEYINPMQAIDEEAIT 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +      V  A+ +    +F    +   I  +N  FD  +  + F  +      
Sbjct: 68  VHGITNEFVADKPV-FAQIAPAFLEFI---DGAEIVAHNANFDVSFMDHEF--SLLTPRG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
               +     D L++ + ++    +               L  L    GI++     H A
Sbjct: 122 PKTTDICQVLDSLEIAKFLHPGQKN--------------NLDALCKRYGIDNSRRELHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  ++   + K 
Sbjct: 168 LLDAEILADVYLIMTGGQTKF 188


>gi|218557151|ref|YP_002390064.1| DNA polymerase III subunit epsilon [Escherichia coli S88]
 gi|218688085|ref|YP_002396297.1| DNA polymerase III subunit epsilon [Escherichia coli ED1a]
 gi|218698838|ref|YP_002406467.1| DNA polymerase III subunit epsilon [Escherichia coli IAI39]
 gi|218703464|ref|YP_002410983.1| DNA polymerase III subunit epsilon [Escherichia coli UMN026]
 gi|293403294|ref|ZP_06647385.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412]
 gi|293408304|ref|ZP_06652143.1| DNA polymerase III [Escherichia coli B354]
 gi|298378908|ref|ZP_06988789.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302]
 gi|218363920|emb|CAR01585.1| DNA polymerase III epsilon subunit [Escherichia coli S88]
 gi|218368824|emb|CAR16572.1| DNA polymerase III epsilon subunit [Escherichia coli IAI39]
 gi|218425649|emb|CAR06436.1| DNA polymerase III epsilon subunit [Escherichia coli ED1a]
 gi|218430561|emb|CAR11427.1| DNA polymerase III epsilon subunit [Escherichia coli UMN026]
 gi|221361649|emb|CAX20320.1| DNA polymerase III, epsilon subunit [Escherichia coli]
 gi|291429147|gb|EFF02167.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412]
 gi|291471482|gb|EFF13965.1| DNA polymerase III [Escherichia coli B354]
 gi|294493054|gb|ADE91810.1| DNA polymerase III, epsilon subunit [Escherichia coli IHE3034]
 gi|298280021|gb|EFI21525.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302]
 gi|323948751|gb|EGB44651.1| DNA polymerase III [Escherichia coli H252]
 gi|323958799|gb|EGB54498.1| DNA polymerase III [Escherichia coli H263]
          Length = 243

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|215485371|ref|YP_002327802.1| DNA polymerase III subunit epsilon [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312964723|ref|ZP_07778974.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75]
 gi|215263443|emb|CAS07763.1| DNA polymerase III, epsilon subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312290744|gb|EFR18622.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75]
          Length = 243

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNATFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|191171395|ref|ZP_03032944.1| DNA polymerase III, epsilon subunit [Escherichia coli F11]
 gi|190908329|gb|EDV67919.1| DNA polymerase III, epsilon subunit [Escherichia coli F11]
 gi|222032040|emb|CAP74779.1| DNA polymerase III subunit epsilon [Escherichia coli LF82]
 gi|312944818|gb|ADR25645.1| DNA polymerase III subunit epsilon [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|320197298|gb|EFW71914.1| DNA polymerase III epsilon subunit [Escherichia coli WV_060327]
          Length = 243

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNATFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium
           sticklandii DSM 519]
 gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium
           sticklandii]
          Length = 828

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 25/186 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G D+  D+  Q A ++  +    ++  E  F K         ++  I  I+ 
Sbjct: 469 VVFDVETTGLDIKKDKIIQIAALKGGKNG-VLQKFE-RFIKIDYSV---GDSFKIHNISD 523

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +   ++GV   +    I  F       +I  +N+ +D    +        +         
Sbjct: 524 EFLFQNGV---DAKSAIDDFLLFSQDSVIVGHNVSYDINILKENMKAIDLNID----KLS 576

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +  +D L + R  Y                 S+KL +L     + H   H+A  DV  TL
Sbjct: 577 SKIFDTLILTRKTYPGFF-------------SYKLGNLFKEFSLNHTPTHNAMDDVICTL 623

Query: 186 ALVWLI 191
            ++  +
Sbjct: 624 EVLEKV 629


>gi|307261758|ref|ZP_07543424.1| hypothetical protein appser12_13170 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868576|gb|EFN00387.1| hypothetical protein appser12_13170 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 248

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 57/215 (26%), Gaps = 30/215 (13%)

Query: 7   IYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           + D ET G   +          +   V V            F          D EA+ + 
Sbjct: 2   VLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVDEEAIKVH 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +      V  AE +    +F       I   +N  FD  +    F        +  
Sbjct: 59  GITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLGNPPPKT- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                S  D L V R +Y                    L  L    GI++     H A  
Sbjct: 114 -AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGALL 158

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
           D      +  ++   +  L        N   +  L
Sbjct: 159 DAEILADVFLMMTGGQLALLGEEDASANHENIADL 193


>gi|295693033|ref|YP_003601643.1| ATP-dependent DNA helicase ding [Lactobacillus crispatus ST1]
 gi|295031139|emb|CBL50618.1| ATP-dependent DNA helicase DinG [Lactobacillus crispatus ST1]
          Length = 926

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++                  V +
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYSFL---INPHREIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  Q   +    +  ++ +I +        +   +N+ FD  +      ++ Y++   
Sbjct: 63  TGIHDQDVAKQRDFDY-YAPKITKILQN---TVFVAHNVDFDLPFLNYELVQHGYEAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL    GI+H++ H A +D
Sbjct: 117 ----TNKAIDTVELAKIAFPTF-------------PSYKLSDLTTQLGIKHLDPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
            Y T  L+  I  K   L +   +  +
Sbjct: 160 AYGTAVLLLEIFNKLESLPQATLNTLS 186


>gi|194334228|ref|YP_002016088.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271]
 gi|194312046|gb|ACF46441.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271]
          Length = 180

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 59/194 (30%), Gaps = 32/194 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G      DR  + A V +      IE    F C    +         I GIT
Sbjct: 14  IAVDVETTGLSPRRGDRVIEVAAVAIVNG--VIEEH--FCCLINVNAPIPTVVQKIHGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+    +   EA       +F     + I+  +N  FD  + RN            S   
Sbjct: 70  PELLAGEKPPEA----VWPEFLKFIGSNILIAHNAPFDISFIRNELRFLGLSLLNGSQ-- 123

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHV-NAHDAKADV 181
                            +    ++P       + KL+++A     G+      H A  D 
Sbjct: 124 --------------CTLAFSRKKFP----QLKNHKLENVARHVLGGMPKGIKLHRASGDA 165

Query: 182 YATLALVWLIREKK 195
             T  +  +I   +
Sbjct: 166 LLTAMIWQVIENTQ 179


>gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78]
 gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78]
          Length = 664

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 53/181 (29%), Gaps = 28/181 (15%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     DR    A V +    E+                P P  V + G+T ++
Sbjct: 75  VDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTL---VDPGCDPGP--VDVHGLTRER 129

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                    + + R+          ++  +N +FD  +  + F R               
Sbjct: 130 LSGAPA-FGQIAGRLGAMLQDR---VLVAHNAQFDYDFLAHEFARARLYLPVT------R 179

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
           R   L + R +             D      KL  LA   G+    AHDA  D      +
Sbjct: 180 RLCTLALNRQV-------------DPPTRDMKLGSLAAHYGVPRTRAHDALDDTRVLAGI 226

Query: 188 V 188
            
Sbjct: 227 F 227


>gi|77360888|ref|YP_340463.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875799|emb|CAI87020.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 237

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 62/220 (28%), Gaps = 32/220 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M    ++ D ET G D     R  +   V  V+R+     +   F          + EA+
Sbjct: 1   MARRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRL----TGNNFHVYINPQRNSEEEAI 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT +      +   + ++    +       ++ +N      +        N     
Sbjct: 57  DVHGITNEFLRDKPLFH-QIAQEFFDYIK--GAELVIHNAPFDIGHMDNEFSLLNQGYPK 113

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
             ++       D L + R ++    +               L  L     +++     H 
Sbjct: 114 TATF---CQVLDTLKMARDLHPGQKN--------------NLDALCRRYDVDNAKRTLHG 156

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
           A  D      +   +   +      L   +NKN       
Sbjct: 157 ALLDSEILADVYLAMTGGQ----VKLNLNQNKNDDTDQQK 192


>gi|120553208|ref|YP_957559.1| DNA polymerase III subunit epsilon [Marinobacter aquaeolei VT8]
 gi|120323057|gb|ABM17372.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 240

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 56/194 (28%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D+ET G +           V       ++        +P         +V I GIT
Sbjct: 50  LVALDFETTGLEADQHSIVSIGLVPFTLTGIQLGQCWHQVVRPR--LPLHKTSVTIHGIT 107

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      +E      +   F   N  I   +    +  +                  N
Sbjct: 108 HSEIENAPDLE----DVLDPLFEHLNGRIPVVHYRNIERPFLNTALQWRL---------N 154

Query: 125 GNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
              R+ ++D M       P+    +W         S +L D  L  G+ H  +H+A  D 
Sbjct: 155 EQLRFPVIDTMAIEAHLHPNRNPSRWQQLMGKKPISIRLADSRLRYGLPHYASHNALIDA 214

Query: 182 YATLALVWLIREKK 195
            AT  L+       
Sbjct: 215 IATAELLQAQVLHH 228


>gi|281177435|dbj|BAI53765.1| DNA polymerase III epsilon subunit [Escherichia coli SE15]
 gi|330910061|gb|EGH38571.1| DNA polymerase 3 epsilon subunit [Escherichia coli AA86]
          Length = 243

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|123968212|ref|YP_001009070.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. AS9601]
 gi|123198322|gb|ABM69963.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. AS9601]
          Length = 259

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 29/191 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              +I D ET G D   D   +   +  D  ++ + S   F     ++     EA  + G
Sbjct: 36  EKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNN-----EAEHVNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +         +      +     +   I  +N+ FD  +                 
Sbjct: 91  IS-AEVTNISQPWEDGLNFFLKLVDSSD--FIVAHNVEFDKKWFGKGR------------ 135

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L  +   +  S + I W  +    T   + DLAL+  I   N H A +D +
Sbjct: 136 ---------LPKLNKKWICSLEDINWSFQKSLKTRPSVTDLALSFSIPVWNLHRALSDCF 186

Query: 183 ATLALVWLIRE 193
               +      
Sbjct: 187 YLSEVFKKCDN 197


>gi|302554973|ref|ZP_07307315.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472591|gb|EFL35684.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 238

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 18/172 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66
           +D ET G D    R    A + V                 AD  +P PE AV + GI+ +
Sbjct: 11  FDLETTGTDPREARIVTGAVIEVRG-----GEPSGRREWLADPGVPIPEDAVAVHGISTE 65

Query: 67  KALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           +A  +G    + +  + +  +        +   N  FD         R+   S R     
Sbjct: 66  RAAAEGRPADQVADAMAEVLTSYWKTGVPVVAYNAAFDLTLLSAELRRHGLPSLR----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                D L  +       P  I             L+ +    G+   +AHD
Sbjct: 121 -----DRLGGVDPAPVIDPYTIDRWVDRYRRGKRNLEAVCAEYGVVLDSAHD 167


>gi|74310830|ref|YP_309249.1| DNA polymerase III subunit epsilon [Shigella sonnei Ss046]
 gi|82542808|ref|YP_406755.1| DNA polymerase III subunit epsilon [Shigella boydii Sb227]
 gi|157156660|ref|YP_001461381.1| DNA polymerase III subunit epsilon [Escherichia coli E24377A]
 gi|157159676|ref|YP_001456994.1| DNA polymerase III subunit epsilon [Escherichia coli HS]
 gi|187734104|ref|YP_001879012.1| DNA polymerase III subunit epsilon [Shigella boydii CDC 3083-94]
 gi|191167032|ref|ZP_03028854.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A]
 gi|193067693|ref|ZP_03048660.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019]
 gi|194427534|ref|ZP_03060082.1| DNA polymerase III, epsilon subunit [Escherichia coli B171]
 gi|194432694|ref|ZP_03064979.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012]
 gi|209917402|ref|YP_002291486.1| DNA polymerase III subunit epsilon [Escherichia coli SE11]
 gi|218552790|ref|YP_002385703.1| DNA polymerase III subunit epsilon [Escherichia coli IAI1]
 gi|218693677|ref|YP_002401344.1| DNA polymerase III subunit epsilon [Escherichia coli 55989]
 gi|260842441|ref|YP_003220219.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2
           str. 12009]
 gi|260853420|ref|YP_003227311.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11
           str. 11368]
 gi|260866358|ref|YP_003232760.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H-
           str. 11128]
 gi|293418309|ref|ZP_06660744.1| DNA polymerase III [Escherichia coli B088]
 gi|332281343|ref|ZP_08393756.1| DNA polymerase III epsilon subunit [Shigella sp. D9]
 gi|73854307|gb|AAZ87014.1| DNA polymerase III epsilon subunit [Shigella sonnei Ss046]
 gi|81244219|gb|ABB64927.1| DNA polymerase III epsilon subunit [Shigella boydii Sb227]
 gi|157065356|gb|ABV04611.1| DNA polymerase III, epsilon subunit [Escherichia coli HS]
 gi|157078690|gb|ABV18398.1| DNA polymerase III, epsilon subunit [Escherichia coli E24377A]
 gi|187431096|gb|ACD10370.1| DNA polymerase III, epsilon subunit [Shigella boydii CDC 3083-94]
 gi|190902925|gb|EDV62652.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A]
 gi|192959105|gb|EDV89541.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019]
 gi|194414304|gb|EDX30578.1| DNA polymerase III, epsilon subunit [Escherichia coli B171]
 gi|194418956|gb|EDX35040.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012]
 gi|209910661|dbj|BAG75735.1| DNA polymerase III epsilon subunit [Escherichia coli SE11]
 gi|218350409|emb|CAU96094.1| DNA polymerase III epsilon subunit [Escherichia coli 55989]
 gi|218359558|emb|CAQ97098.1| DNA polymerase III epsilon subunit [Escherichia coli IAI1]
 gi|257752069|dbj|BAI23571.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11
           str. 11368]
 gi|257757588|dbj|BAI29085.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2
           str. 12009]
 gi|257762714|dbj|BAI34209.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H-
           str. 11128]
 gi|291324837|gb|EFE64252.1| DNA polymerase III [Escherichia coli B088]
 gi|320186397|gb|EFW61129.1| DNA polymerase III epsilon subunit [Shigella flexneri CDC 796-83]
 gi|320201190|gb|EFW75773.1| DNA polymerase III epsilon subunit [Escherichia coli EC4100B]
 gi|323160256|gb|EFZ46213.1| DNA polymerase III, epsilon subunit [Escherichia coli E128010]
 gi|323165914|gb|EFZ51696.1| DNA polymerase III, epsilon subunit [Shigella sonnei 53G]
 gi|323171002|gb|EFZ56651.1| DNA polymerase III, epsilon subunit [Escherichia coli LT-68]
 gi|323176527|gb|EFZ62119.1| DNA polymerase III, epsilon subunit [Escherichia coli 1180]
 gi|323181627|gb|EFZ67042.1| DNA polymerase III, epsilon subunit [Escherichia coli 1357]
 gi|324115459|gb|EGC09401.1| DNA polymerase III [Escherichia coli E1167]
 gi|332093741|gb|EGI98796.1| DNA polymerase III, epsilon subunit [Shigella boydii 3594-74]
 gi|332095033|gb|EGJ00068.1| DNA polymerase III, epsilon subunit [Shigella boydii 5216-82]
 gi|332097572|gb|EGJ02551.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 155-74]
 gi|332103695|gb|EGJ07041.1| DNA polymerase III epsilon subunit [Shigella sp. D9]
          Length = 243

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|16128202|ref|NP_414751.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107090|ref|AP_000870.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. W3110]
 gi|170079846|ref|YP_001729166.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|238899608|ref|YP_002925404.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952]
 gi|256024146|ref|ZP_05438011.1| DNA polymerase III subunit epsilon [Escherichia sp. 4_1_40B]
 gi|118805|sp|P03007|DPO3E_ECOLI RecName: Full=DNA polymerase III subunit epsilon
 gi|42063|emb|CAA27661.1| unnamed protein product [Escherichia coli]
 gi|147679|gb|AAA24564.1| DNA polymerase III epsilon subunit [Escherichia coli]
 gi|1786409|gb|AAC73320.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|4902952|dbj|BAA77886.1| DNA polymerase III epsilon subunit [Escherichia coli str. K12
           substr. W3110]
 gi|169887681|gb|ACB01388.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|238860830|gb|ACR62828.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952]
 gi|315134900|dbj|BAJ42059.1| DNA polymerase III subunit epsilon [Escherichia coli DH1]
 gi|315616887|gb|EFU97504.1| DNA polymerase III, epsilon subunit [Escherichia coli 3431]
 gi|323943406|gb|EGB39558.1| DNA polymerase III [Escherichia coli E482]
 gi|332341543|gb|AEE54877.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli UMNK88]
          Length = 243

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|319650832|ref|ZP_08004969.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2]
 gi|317397430|gb|EFV78131.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2]
          Length = 220

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 65/212 (30%), Gaps = 23/212 (10%)

Query: 4   HFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F+++D ET G  V A DR  +   V V + ++  E  ++F            E   +T 
Sbjct: 27  SFIVFDTETTGFQVSATDRIIEIGAVPV-KGFQVQEK-DLFQTYVNPKRQISREIRELTS 84

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ +          E       +        +  + + FD    ++ F R   +      
Sbjct: 85  ISDELVKDAPQAL-EAILSFFDYVESREAVCLVGHYVGFDALAIKSEFKR---EKLALKN 140

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  DL+  +   Y                    L+  A+A G    + H A  D  
Sbjct: 141 FLTIDTLDLIGFIAPSYDMRD----------------LERYAMAFGTRIYDRHSAVGDAL 184

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
            T  L   +  +  +  +  +    K    ++
Sbjct: 185 TTAYLYVELLFQFQQRGQKTWGELIKATDSQM 216


>gi|226355514|ref|YP_002785254.1| ATP-dependent DNA helicase [Deinococcus deserti VCD115]
 gi|226317504|gb|ACO45500.1| putative ATP-dependent DNA helicase [Deinococcus deserti VCD115]
          Length = 1683

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 72/232 (31%), Gaps = 23/232 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +VI D ET   D A  R  + A VRV       ++ ++             E   +TGI
Sbjct: 8   SYVILDTETTSVDRAEARLLEVAAVRV-EDGRICDTLQLLVS----GERIPREVAELTGI 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             ++  RDG    +  +++  F       ++G+N   FD                     
Sbjct: 63  RQEELDRDGQPLPDVLKQVLAFMGDLP--VVGHNAQGFDVP---------LLKRLCREQS 111

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKADVY 182
                  + D +                      + L+ L A   G  H +AH   AD  
Sbjct: 112 LKFQVPFVFDTLLLAPLAFAAV------VPPVEGYGLEGLHARFCGDVHDDAHRTLADCA 165

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           AT  L+  + E+   L E      +   + +L        +        +SR
Sbjct: 166 ATSRLLAYMVERLRALPEDQKALISALPVPELALAFQPRSITKAELERLSSR 217


>gi|302668948|ref|YP_003832773.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
 gi|302397288|gb|ADL36191.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
          Length = 302

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 68/210 (32%), Gaps = 23/210 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +IYD ET G         Q + +++          +               A  +  IT
Sbjct: 33  IIIYDTETTGTGK-KAYIVQISALKLSP-GNPYYIVDTLDQYIRPPIPMPAAASAVNHIT 90

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            +        E      I  FF  PN  +I GYN+I FD+    N++ R    ++   W 
Sbjct: 91  DEFLEDKP-SEEIALSWIQNFFGDPNDSVIAGYNHISFDNKMMNNMYQRAAGLTFDPKW- 148

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA---HDAKAD 180
                 D L + R +             +     F L  +A   GI+       H+A  D
Sbjct: 149 ----NVDALVMARCL---------VDRNEITDGRFTLASIAETYGIKTDEDQQLHNAMTD 195

Query: 181 VYATLALVWLI--REKKPKLFEYLYDYRNK 208
           +  T+ ++W +        L +       K
Sbjct: 196 IQVTMKVMWALINDYVDSGLEQVYLSQSTK 225


>gi|225850393|ref|YP_002730627.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
 gi|225646485|gb|ACO04671.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
          Length = 206

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 18/191 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F  +D ET G DV  D       V++     KI+ +  F+     + +P+ E + I  I
Sbjct: 34  TFCSFDLETTGLDVEKDEIISIGAVKIKEM--KIDLSTSFYRIVKPERIPEKENILIHSI 91

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  + ++ G    +   +  ++     T +IGY         S+       +        
Sbjct: 92  TASE-MKKGEDIRDVLPKFLEYIK--GTVLIGYFVSFDISMLSKYTQKFYGFPILN---- 144

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +     +    ++  +  +      L  +A    I     H+A  D   
Sbjct: 145 ---------PYIDVSQLYIKKKVKSYTPYEKIKEKSLDQIAEELNIPVRKRHNALYDSIT 195

Query: 184 TLALVWLIREK 194
           T  +   + ++
Sbjct: 196 TALIFLSLMKR 206


>gi|254491084|ref|ZP_05104265.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxidans
           DMS010]
 gi|224463597|gb|EEF79865.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxydans
           DMS010]
          Length = 245

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 54/193 (27%), Gaps = 26/193 (13%)

Query: 6   VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           VI D ET G   A D R  +   V +            F          D  A+ + GIT
Sbjct: 10  VILDTETTGISTADDHRIIEIGCVEM-VNRRLTGQ--TFHQYINPQRDIDAGAIEVHGIT 66

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   E +     F        +  +N  FD  +  +   +   D      + 
Sbjct: 67  NEFLADKPL-FTEIAEEFLSFIEGAE---LVIHNAPFDVGFINHELAK--LDGETRRVET 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            ++  D L + R  +    +               L  L     + + N   H A  D  
Sbjct: 121 LSTVLDTLKMARDKHPGQKN--------------NLDALCKRYDVNNANRELHGALLDAE 166

Query: 183 ATLALVWLIREKK 195
               +   +   +
Sbjct: 167 ILADVYLAMTGGQ 179


>gi|145219710|ref|YP_001130419.1| DNA polymerase III, epsilon subunit [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205874|gb|ABP36917.1| DNA polymerase III, epsilon subunit [Chlorobium phaeovibrioides DSM
           265]
          Length = 221

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 23/190 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63
           FV++D ET G D+  DR      V ++     I +S EV   +P        E+V + G+
Sbjct: 34  FVVFDTETTGFDLQNDRVISIGAVALEGSAITIADSFEVLVRQPGVG---QKESVSVHGL 90

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +     GV E +    +  F       I+   +  FD      + +  F         
Sbjct: 91  LKKDIA-SGVSERD---GVTSFLDYIGNSILVAQHASFDVAMLNRLLWELF--------- 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADV 181
               R  L + +    + +    + P  +    +  ++L  L    GI   + H +  D 
Sbjct: 138 ----RIRLFNGVVDTASLAKRLEKGPYHNLAHKAGEYRLDHLCQRYGIRLHDRHTSAGDA 193

Query: 182 YATLALVWLI 191
           Y T  L+  +
Sbjct: 194 YLTAQLLQRL 203


>gi|332525346|ref|ZP_08401511.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
 gi|332108620|gb|EGJ09844.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 234

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 57/195 (29%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G   V  DR  +   +       +  S          +   +PEAV + G+T
Sbjct: 4   IFLDTETTGLSAVDGDRLVEVGCI---EMLNRRLSGRTLHHYLNPERSSNPEAVKVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  A  +    +F       I   +N  FD  +      R          + 
Sbjct: 61  DEFLADKPL-FAAVADEFIEFVRDAELII---HNAAFDVGFLDAELTRLGKP---RLVEL 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
           G +  D L + R ++    +               L  L     +++ N   H A  D  
Sbjct: 114 GCTITDSLVMARQLFPGKAN--------------SLDALCKRLEVDNSNRALHGALLDAG 159

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 160 LLAEVYIRMTRGQDS 174


>gi|300715435|ref|YP_003740238.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
 gi|299061271|emb|CAX58380.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
          Length = 244

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 55/198 (27%), Gaps = 30/198 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            +      D L DPEA  +
Sbjct: 10  IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNYHVYLKPDRLVDPEAFGV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +         A+ +    ++    +   +  +N  FD  +    F +   +  + 
Sbjct: 67  HGIADEFLADKP-TFADIADGFLEYI---DGAELVIHNASFDIGFMDYEFAKLGRNIPKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 123 E--TFCRITDSLAMARKMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKP 196
            D      +   +   + 
Sbjct: 167 LDSEILAEVFLAMTGGQT 184


>gi|332715841|ref|YP_004443307.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3]
 gi|325062526|gb|ADY66216.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3]
          Length = 326

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 67/244 (27%), Gaps = 39/244 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           VI D ET G +   D   +   +    D Q    + T V+            E   +TGI
Sbjct: 74  VILDTETTGLNHRTDEIIEIGVITFTFDDQGTIGDVTGVYGGLRQPGTSIPEEITRLTGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +       R+          +I  +N  FD  +                  
Sbjct: 134 TDEMVAGQTID----IDRLTSLVE--GADLIIAHNAGFDRPFCEA--------------- 172

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +    A++    +      G    KL  L   +G  H   H A  D +A
Sbjct: 173 --------FSPIFRNKAWACSVSEVDWSGRGFEGSKLAYLIGQSGYFHDG-HRAVDDCFA 223

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA-------SRSN 236
            L ++  +R  +           +++   ++    +   +       G         R  
Sbjct: 224 LLEVLEQVRAGQSGTPFMELHEASQHSRVRIYAENSPFDMKDHLKKRGYRWSDGSDGRPK 283

Query: 237 TALI 240
           +  +
Sbjct: 284 SWWV 287


>gi|168484461|ref|ZP_02709413.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042316|gb|EDT50362.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1873-00]
 gi|332203958|gb|EGJ18025.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA47368]
          Length = 816

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +   +      ++    
Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K +     L          D  +    L     E +      +  +  ++   
Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVVLLLKDEPVS 266

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L+       + +        +  E   +L   T +                    + ++ 
Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                   ++            + L   F               L E+   YR ++F
Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|161615575|ref|YP_001589540.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364939|gb|ABX68707.1| hypothetical protein SPAB_03350 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 246

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 30/212 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L   V    F+  + +F        +  +N  FD  +    F     D  + 
Sbjct: 69  HGIADEFLLDKPV----FADVVDEFLDYIRDAELVIHNASFDIGFMDYEFGLLKRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            D      +   +   +  +   +     + Q
Sbjct: 169 LDAQILAEVYLAMTGGQTSMTFAMEGETQRQQ 200


>gi|264676215|ref|YP_003276121.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
 gi|262206727|gb|ACY30825.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
          Length = 214

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 30/178 (16%)

Query: 1   MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+    + D+ET G   A   R  + A V +  Q   ++  +             P    
Sbjct: 2   MSAAIAVIDFETTGMTPAQGARATEVAIVLL-EQGRVVDRFQSLM---QTGAWVSPFITE 57

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT           AE  R   +F        +  +N  FD  + +            
Sbjct: 58  LTGITNAMLRTAP-PAAEVMRDAARFV---GAAPMVAHNASFDSKFWQAEL--------- 104

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176
                       L    A   F+   +        A S  L +LA          AH 
Sbjct: 105 -----------ALAGEAAPQLFACTVLLSRRIYPQAPSHSLGNLARYLHLPSTGRAHR 151


>gi|149003435|ref|ZP_01828324.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP14-BS69]
 gi|237821000|ref|ZP_04596845.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758618|gb|EDK65616.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP14-BS69]
          Length = 816

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +   +      ++    
Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K +     L          D  +    L     E +      +  +  ++   
Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L+       + +        +  E   +L   T +                    + ++ 
Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                   ++            + L   F               L E+   YR ++F
Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|308125815|ref|ZP_05777630.2| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|308111533|gb|EFO49073.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 247

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 24/197 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
           FV  D+ET G +   D       V        I+  +           +   + E+V I 
Sbjct: 57  FVSVDFETTGLNAEDDAILTIGLVPF-----TIDRVQCSGSAHWIVNPNRELNEESVVIH 111

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +         +    I    +     ++ +               R F+ +   +
Sbjct: 112 GITDSEVKNAPQ-LTQILGEILDALA--GKVVLVH----------YKNIERQFFYNALLN 158

Query: 122 WDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAK 178
                 ++ ++D +   YA         W         S +L       G+     H A 
Sbjct: 159 TIGEGIQFPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLPAYQPHHAL 218

Query: 179 ADVYATLALVWLIREKK 195
            D  AT  L     +  
Sbjct: 219 TDALATAELFQAQLQYH 235


>gi|149190815|ref|ZP_01869080.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
 gi|148835377|gb|EDL52349.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
          Length = 239

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 12/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +   D       V  +    +++    +  +P      + E+V I GIT
Sbjct: 49  FVALDFETTGLNPDKDGILSIGLVPFNASRIRLKQAAHWTIRPK--AKLEEESVVIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               L       E    +    +     II  +    +  +  +   R   +        
Sbjct: 107 HNDILDAP-TLDEVLGDVLSALA---GKIIVVHYRPIERGFLNSALKRMIGEGIE----- 157

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + +     +    GI    +   A S +L       G+     H A  D  AT
Sbjct: 158 -FPVVDTMQIESDYQSRLTGGIINKLKGKRADSVRLGQSRRRYGLPDYPPHHALTDAIAT 216

Query: 185 LALVWLIREKK 195
             L+       
Sbjct: 217 AELLQAQLAYH 227


>gi|149010565|ref|ZP_01831936.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP19-BS75]
 gi|147765046|gb|EDK71975.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP19-BS75]
          Length = 816

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +   +      ++    
Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K +     L          D  +    L     E +      +  +  ++   
Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L+       + +        +  E   +L   T +                    + ++ 
Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                   ++            + L   F               L E+   YR ++F
Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|323963754|gb|EGB59256.1| DNA polymerase III [Escherichia coli M863]
          Length = 246

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMNYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|254712763|ref|ZP_05174574.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254715832|ref|ZP_05177643.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261217593|ref|ZP_05931874.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261320470|ref|ZP_05959667.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
 gi|260922682|gb|EEX89250.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261293160|gb|EEX96656.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
          Length = 329

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 35/186 (18%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + A +   +   V  R        +    F            E   ITGI
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAE---ITGI 130

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +   E    I +        II  +N  FD  +                  
Sbjct: 131 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPF------------------ 166

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 + L +  A   ++    +      G    KL  L   +G  H N H A+ D  A
Sbjct: 167 -----LERLSIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH-NGHRAEDDCQA 220

Query: 184 TLALVW 189
            LA++ 
Sbjct: 221 LLAVLK 226


>gi|299531122|ref|ZP_07044534.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
 gi|298720825|gb|EFI61770.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
          Length = 213

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 30/178 (16%)

Query: 1   MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+    + D+ET G   A   R  + A V +  Q   ++  +             P    
Sbjct: 1   MSAAIAVIDFETTGMTPAQGARATEVAIVLL-EQGRVVDRFQSLM---QTGAWVSPFITE 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT           AE  R   +F        +  +N  FD  + +            
Sbjct: 57  LTGITNAMLRTAP-PAAEVMRDAARFV---GAAPMVAHNASFDSKFWQAEL--------- 103

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176
                       L    A   F+   +        A S  L +LA          AH 
Sbjct: 104 -----------ALAGEAAPQLFACTVLLSRRIYPQAPSHSLGNLARYLHLPSTGRAHR 150


>gi|225856476|ref|YP_002737987.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae P1031]
 gi|225724714|gb|ACO20566.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae P1031]
          Length = 816

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/418 (14%), Positives = 125/418 (29%), Gaps = 54/418 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L +     ++   +  ++   +           S   +   
Sbjct: 157 ATAELLLFLREKMTQLPKGLLERLL--EMADALLYESYLVIEETYRNQSILSSPDLVQVQ 214

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
             +  +   S+    LS D      L ++++ +   +   E+          + L   P+
Sbjct: 215 GLYFKKMAASLEPRKLSQDFSKNISLLNLEVREEQESFAKEVG---------LLLKDEPV 265

Query: 303 -LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
            L+       + +        +  E   +L   T +                    + ++
Sbjct: 266 SLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIH 323

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                    ++            + L   F               L E+   YR ++F
Sbjct: 324 SLKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|333008996|gb|EGK28455.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-218]
          Length = 243

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAVFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|295704398|ref|YP_003597473.1| exonuclease family protein [Bacillus megaterium DSM 319]
 gi|294802057|gb|ADF39123.1| exonuclease family protein [Bacillus megaterium DSM 319]
          Length = 197

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 32/201 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + D ET G         + A   V       E I+  E +           P    +TGI
Sbjct: 11  VLDVETTGLSAQTCDIIELAIAVVSYDSSTGEIIDIVEEYEEFNMPSTPIFPYITNLTGI 70

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      + +    +++    +  +  I   +N  FD  +                  
Sbjct: 71  TNEMVKNKTLDD----KKVESLLTSVSAII--AHNASFDRSFLL---------------- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R+  L   +   +      +    + G  + KL  L   + IE  +AH A  DV  
Sbjct: 109 ---KRYPSLSNQKWHCSMRAVKWK----EYGFPNKKLTTLLDHHNIEREHAHRAMDDVKG 161

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ L+          F  +  
Sbjct: 162 TIDLLRQQNPSGEPYFSEVLK 182


>gi|169833275|ref|YP_001694265.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae Hungary19A-6]
 gi|168995777|gb|ACA36389.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae Hungary19A-6]
 gi|327390159|gb|EGE88502.1| putative dnaQ exonuclease/DinG family helicase [Streptococcus
           pneumoniae GA04375]
          Length = 816

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +   +      ++    
Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K +     L          D  +    L     E +      +  +  ++   
Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L+       + +        +  E   +L   T +                    + ++ 
Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                   ++            + L   F               L E+   YR ++F
Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|126730109|ref|ZP_01745921.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37]
 gi|126709489|gb|EBA08543.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37]
          Length = 229

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 66/220 (30%), Gaps = 30/220 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V     +  + + E +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFEPEQGDRIVEIGAV---ELFNHVPTGETYHQYINPERSMPQEAFAVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V    F++ + +F +      +  +N  FD  +           +       
Sbjct: 61  DDFLRDKPV----FAKIVDEFRTFIGDSKLVIHNAAFDVKFLNAELRWANRPTLA----- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D LD+ R  +  SP                L  L    GI++ +   H A  D  
Sbjct: 112 KDCAIDTLDIARRKFPGSPA--------------SLDALCRRFGIDNSSRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
               +   +   K   F  L    N   + + +      P
Sbjct: 158 ILAEVYLELIGGKQPDFG-LTSASNTPSVGETVTNWRPKP 196


>gi|52425625|ref|YP_088762.1| DNA polymerase III subunit epsilon [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307677|gb|AAU38177.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 260

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 31/203 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V +             + KP  D L DPEA+ +
Sbjct: 11  ILLDTETTGMNQFGAHYEGHCIIEIGAVEM-INRRYTGRKLHLYIKP--DRLVDPEAIKV 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +      V   E ++    F       I   +N  FD  +    F ++  D    
Sbjct: 68  HGITDEMLEDKPV-FTEVAQEFIDFIKGAELLI---HNAPFDVGFMDYEFRKHHIDVKT- 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +  S  D L + R +Y                    L  L    GI++     H A 
Sbjct: 123 --ADICSVTDTLQLARQMYPG--------------KRNSLDALCDRLGIDNTKRVLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
            D      +  ++   +  LF+ 
Sbjct: 167 LDAEILGDVYLVMTGGQTSLFDD 189


>gi|323157950|gb|EFZ44052.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa14]
          Length = 246

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|227878664|ref|ZP_03996579.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256850383|ref|ZP_05555811.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|262046469|ref|ZP_06019431.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus MV-3A-US]
 gi|227861728|gb|EEJ69332.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
 gi|256712780|gb|EEU27773.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US]
 gi|260573340|gb|EEX29898.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus MV-3A-US]
          Length = 926

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++                  V +
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYSFL---INPHREIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  Q   +    +  ++ +I +        +   +N+ FD  +      ++ Y++   
Sbjct: 63  TGIHDQDVAKQRDFDY-YAPKITKILQN---TVFVAHNVDFDLPFLNYELVQHGYEAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL    GI+H++ H A +D
Sbjct: 117 ----TNKAIDTVELAKIAFPTF-------------PSYKLSDLTTQLGIKHLDPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
            Y T  L+  I  K   L +   +  +
Sbjct: 160 AYGTAVLLLEIFNKLESLPQATLNTLS 186


>gi|294499074|ref|YP_003562774.1| exonuclease family protein [Bacillus megaterium QM B1551]
 gi|294349011|gb|ADE69340.1| exonuclease family protein [Bacillus megaterium QM B1551]
          Length = 197

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 32/201 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + D ET G         + A   V       E I+  E +           P    +TGI
Sbjct: 11  VLDVETTGLSAQTCDIIELAIAVVSYDSSTGEIIDIVEEYEEFNMPSTPIFPYITNLTGI 70

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      + +    +++    +  +  I   +N  FD  +                  
Sbjct: 71  TNEMVKNKTLDD----KKVESLLTSVSAII--AHNASFDRSFLL---------------- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R+  L   +   +      +    + G  + KL  L   + IE  +AH A  DV  
Sbjct: 109 ---KRYPSLFNQKWHCSMRAVKWK----EYGFPNKKLTTLLDHHNIEREHAHRAMDDVKG 161

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T+ L+          F  +  
Sbjct: 162 TIDLLRQQNPSGEPYFSEVLK 182


>gi|289679441|ref|ZP_06500331.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae FF5]
 gi|330975085|gb|EGH75151.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 259

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  IVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N  +       R  
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                S  D L + R  +    +               L  L    G+++     H A  
Sbjct: 120 ITQHCSVLDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|294660232|ref|NP_852876.2| DNA polymerase III subunit alpha polC/Gram positive-type
           [Mycoplasma gallisepticum str. R(low)]
 gi|284811887|gb|AAP56444.2| DNA polymerase III alpha subunit polC/Gram positive-type
           [Mycoplasma gallisepticum str. R(low)]
 gi|284930337|gb|ADC30276.1| DNA polymerase III alpha subunit polC/Gram positive-type
           [Mycoplasma gallisepticum str. R(high)]
          Length = 1494

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 74/227 (32%), Gaps = 31/227 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-----FCKPADDYLP-DPEA 57
            FVI+D ET G +   ++  + A VRV  +         F     F K   +  P     
Sbjct: 409 SFVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEFVQIGKFEKLIKNKKPLSKFT 468

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+           E         F    +  ++ +N I FD  +      +     
Sbjct: 469 TQLTGLKDSDLKDA-QDEKTVLEEFVNFIQKDD-VLVAHNGIDFDFIWINTKLDKYKLKP 526

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AH 175
                        +LD +R  Y                  + L++L+L  G E+    AH
Sbjct: 527 LDNP---------MLDSLRLAYQLY-----------QFKRYTLENLSLKLGYEYDKTLAH 566

Query: 176 DAKADVYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            A  D        + ++ +   K +  L D  ++ +L   +  +++ 
Sbjct: 567 RANYDTELLAKCLMIMLSQVYAKNWRSLLDLNDQEKLLNDLSEKSLK 613


>gi|209364170|ref|YP_001425094.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
           5J108-111]
 gi|212213173|ref|YP_002304109.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
 gi|212218153|ref|YP_002304940.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
 gi|215918940|ref|NP_819360.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
 gi|206583825|gb|AAO89874.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
 gi|207082103|gb|ABS77173.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
           5J108-111]
 gi|212011583|gb|ACJ18964.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
 gi|212012415|gb|ACJ19795.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
          Length = 236

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 59/199 (29%), Gaps = 26/199 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G       R  +   + +        +   F+     +   + +A+ I GIT
Sbjct: 8   IVLDTETTGLVPEEGHRIIEIGALEM-VNRRLTGNHLHFY--INPERSIERDAIEIHGIT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +   +   + +  +  F       I   +N  FD  +  +            +  +
Sbjct: 65  DSFLIDKPL-FKDIATELISFLKGAELII---HNAPFDVGFLNHELKLTGQS--FKTLTH 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +    +               L  L     +++ N   H A  D  
Sbjct: 119 YCQVLDTLTIARQKHPGQHN--------------NLDALCRRYHVDNSNRDYHGALLDAE 164

Query: 183 ATLALVWLIREKKPKLFEY 201
               +  L+   +  LFE 
Sbjct: 165 LLAQVYLLMTGGQTVLFEQ 183


>gi|269955496|ref|YP_003325285.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304177|gb|ACZ29727.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 247

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 64/213 (30%), Gaps = 18/213 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DVA DR    A V +       +   V             EA  I G+T + 
Sbjct: 21  FDTETTGVDVANDRIVT-AAVVLRIPGVSTD---VRTWLVDPGVEIPAEAAAIHGVTTEH 76

Query: 68  ALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A   GV  A     I    +        +   N  FD         R+           G
Sbjct: 77  ARAHGVAPAVALEEIAAELAAHLREGVPVVAYNAAFDLSLLDAELARHGL--ATLPERLG 134

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKADVYAT 184
            +   +LD +                       +L DL    G+    + H A  DV AT
Sbjct: 135 RAVTPVLDPLVLDR---------WQDRYRRGKRRLGDLVTHYGVLTTEDLHAADVDVLAT 185

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
           L ++  +    P+L     +  +  Q+      
Sbjct: 186 LDVLDALVRTFPELGALGLEELHHAQVGAHDTW 218


>gi|197284137|ref|YP_002150009.1| DNA polymerase III subunit epsilon [Proteus mirabilis HI4320]
 gi|194681624|emb|CAR40653.1| DNA polymerase III, epsilon subunit [Proteus mirabilis HI4320]
          Length = 252

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 55/209 (26%), Gaps = 30/209 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V V            F      + L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPERLVDPEAFEV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         AE +     +       I   +N  FD  +    F +   D    
Sbjct: 66  HGISDEFLEDCP-SFAEIADEFLAYIRGAELII---HNASFDIGFMDYEFQKLNRDIPLT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCQITDSLAMARELFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRN 207
            D      +   +   +  L   +    N
Sbjct: 166 LDAEILADVYLAMTGGQTALAFSMEGESN 194


>gi|88601936|ref|YP_502114.1| exonuclease [Methanospirillum hungatei JF-1]
 gi|88187398|gb|ABD40395.1| Exonuclease [Methanospirillum hungatei JF-1]
          Length = 215

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 23/201 (11%)

Query: 4   HFVIYDYETFGR-----DV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
            ++I+D E+ G      D         R  Q A +  D +    E    +   P    +P
Sbjct: 2   KYLIFDTESTGLPREEKDPFHYPEYWPRMVQLAWILTDGETIITEE--NYLIYPDGFVIP 59

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
              ++ I GIT ++A  +G    E      +     +  ++  +N+ FD     + + R 
Sbjct: 60  S-SSMEIHGITNERAREEGKPVLEVLSVFSESIKQAD--VLVGHNVSFDRSIVTSEYSRA 116

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             ++         +     +V +        G +WPS  +                   +
Sbjct: 117 KLNAPILKLPYHCTMKTSTEVCKLPAKGGRRGYKWPSLSELH--------QFLFEEPFEH 168

Query: 174 AHDAKADVYATLALVWLIREK 194
           AHDA ADV A +     ++ +
Sbjct: 169 AHDASADVRACMRCYLELKNR 189


>gi|28898498|ref|NP_798103.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879545|ref|ZP_05891900.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260894980|ref|ZP_05903476.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|28806716|dbj|BAC59987.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308086038|gb|EFO35733.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308093371|gb|EFO43066.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
          Length = 248

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 24/197 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
           FV  D+ET G +   D       V        I+  +           +   + E+V I 
Sbjct: 58  FVSVDFETTGLNAEDDAILTIGLVPF-----TIDRVQCSGSAHWIVNPNRELNEESVVIH 112

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +         +    I    +     ++ +               R F+ +   +
Sbjct: 113 GITDSEVKNAPQ-LTQILGEILDALA--GKVVLVH----------YKNIERQFFYNALLN 159

Query: 122 WDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAK 178
                 ++ ++D +   YA         W         S +L       G+     H A 
Sbjct: 160 TIGEGIQFPVVDTLDIEYALQRRECSGIWNKLKGKKPGSVRLGHARERYGLPAYQPHHAL 219

Query: 179 ADVYATLALVWLIREKK 195
            D  AT  L     +  
Sbjct: 220 TDALATAELFQAQLQYH 236


>gi|307127646|ref|YP_003879677.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae 670-6B]
 gi|306484708|gb|ADM91577.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae 670-6B]
          Length = 816

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +   +      ++    
Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K +     L          D  +    L     E +      +  +  ++   
Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L+       + +        +  E   +L   T +                    + ++ 
Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                   ++            + L   F               L E+   YR ++F
Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 896

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 27/197 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFF--CKPADDYLPDPEA 57
            +  V++D ET G +V  D   Q A V++  + + +  E  E+F    +P    L D E 
Sbjct: 511 QDTLVVFDTETTGLNVLEDDIVQIAAVKI-AKGKVLENERFEIFIDTKRPIPAMLGDIEN 569

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             I     ++  +        +  + +F    +  ++  +N  +D     N   R     
Sbjct: 570 PLI-----EEIKKH--TLHTPAEALARFMEYIDGAMLVGHNATYDYQILYNNLLRYL--P 620

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                   +S  D L + R                    ++KL++L     +E  N H A
Sbjct: 621 QYTFLQKHSSYIDTLKLTRL-------------LQPSLKNYKLKNLLQEFQLEGQNTHLA 667

Query: 178 KADVYATLALVWLIREK 194
            ADV+AT+ LV    ++
Sbjct: 668 DADVHATVGLVHFCYQQ 684


>gi|296284843|ref|ZP_06862841.1| DNA polymerase III epsilon subunit [Citromicrobium bathyomarinum
           JL354]
          Length = 240

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I+D ET G D     R  +   V +  +    E+   ++     +     EA  I G++
Sbjct: 11  IIFDTETTGIDPRQGHRMVEIGCVELVDRMPTGETFHAYY---NPERDMPAEAEAIHGLS 67

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q           F+  + +F       ++  +N  FD  +          +    +   
Sbjct: 68  AQFLADKPR----FADAVDEFLDFVRDDMLVAHNAGFDFAFLNAELELCTREPICLTRK- 122

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L++ R                       L  L    G++  H   H A  D  
Sbjct: 123 ----IDTLEMARRKNPG--------------GKHSLDALCSRYGVDRSHRVFHGALLDAE 164

Query: 183 ATLALV 188
               + 
Sbjct: 165 LLAQVY 170


>gi|149375575|ref|ZP_01893345.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola
           DG893]
 gi|149360280|gb|EDM48734.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola
           DG893]
          Length = 240

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 57/194 (29%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G D           V       ++                   +V I GIT
Sbjct: 50  FVAVDFETTGLDPDKHSIVSIGVVPFTLGRVQLG--GSRHWLVKPQLPLHQTSVTIHGIT 107

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                +      +    I +  +      + +       + +  + +R   +        
Sbjct: 108 HTDIDKAP-DLDDVLDEILKSLA--GRIPVVHYRNIERPFLNMALKWRIGEEI------- 157

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRD---DGATSFKLQDLALANGIEHVNAHDAKADV 181
              R+ ++D M       P+  +   +        S +L D  L  G+ H   H+A  D 
Sbjct: 158 ---RFPVMDTMAIEAYLHPNRKRSWWQKLKGQQPISIRLADSRLRYGLPHYPPHNALVDA 214

Query: 182 YATLALVWLIREKK 195
            A+  L+    +  
Sbjct: 215 LASAELLMAQVQHH 228


>gi|293380924|ref|ZP_06626958.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus 214-1]
 gi|290922499|gb|EFD99467.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus 214-1]
          Length = 926

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++                  V +
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYSFL---INPHREIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  Q   +    +  ++ +I +        +   +N+ FD  +      ++ Y++   
Sbjct: 63  TGIHDQDVAKQRDFDY-YAPKITKILQN---TVFVAHNVDFDLPFLNYELVQHGYEAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL    GI+H++ H A +D
Sbjct: 117 ----TNKAIDTVELAKIAFPTF-------------PSYKLSDLTTQLGIKHLDPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
            Y T  L+  I  K   L +   +  +
Sbjct: 160 AYGTAVLLLEIFNKLESLPQATLNTLS 186


>gi|237649440|ref|ZP_04523692.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae CCRI 1974]
          Length = 831

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 21  NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 75

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 76  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 125

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 126 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 171

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +   +      ++    
Sbjct: 172 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 226

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K +     L          D  +    L     E +      +  +  ++   
Sbjct: 227 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 281

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L+       + +        +  E   +L   T +                    + ++ 
Sbjct: 282 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 339

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                   ++            + L   F               L E+   YR ++F
Sbjct: 340 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 396


>gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210]
          Length = 348

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +                  +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|256843260|ref|ZP_05548748.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614680|gb|EEU19881.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
           crispatus 125-2-CHN]
          Length = 926

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++                  V +
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYSFL---INPHREIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  Q   +    +  ++ +I +        +   +N+ FD  +      ++ Y++   
Sbjct: 63  TGIHDQDVAKQRDFDY-YAPKITKILQN---TVFVAHNVDFDLPFLNYELVQHGYEAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL    GI+H++ H A +D
Sbjct: 117 ----TNKAIDTVELAKIAFPTF-------------PSYKLSDLTTQLGIKHLDPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
            Y T  L+  I  K   L +   +  +
Sbjct: 160 AYGTAVLLLEIFNKLESLPQATLNTLS 186


>gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC
           13177]
          Length = 349

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +                  +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215]
          Length = 346

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +                  +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|148985845|ref|ZP_01818939.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|148990415|ref|ZP_01821581.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|168575465|ref|ZP_02721401.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae MLV-016]
 gi|194397188|ref|YP_002037447.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae G54]
 gi|307067407|ref|YP_003876373.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200]
 gi|147921991|gb|EDK73115.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|147924320|gb|EDK75413.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|183578476|gb|EDT99004.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae MLV-016]
 gi|194356855|gb|ACF55303.1| Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG
           [Streptococcus pneumoniae G54]
 gi|301799817|emb|CBW32386.1| putative exonuclease [Streptococcus pneumoniae OXC141]
 gi|306408944|gb|ADM84371.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200]
          Length = 816

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +   +      ++    
Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K +     L          D  +    L     E +      +  +  ++   
Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L+       + +        +  E   +L   T +                    + ++ 
Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                   ++            + L   F               L E+   YR ++F
Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|89072943|ref|ZP_01159490.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
 gi|89051161|gb|EAR56617.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
          Length = 249

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 12/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +   D       V  +      + ++ +  KP      D ++V I GIT
Sbjct: 59  FVALDFETTGLNANKDDIISVGLVPFNINRIFCKQSQHWVVKPK--AKLDEDSVIIHGIT 116

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +  R +          ++  +    +  +          +  +     
Sbjct: 117 HSDVQTAP----DIRRILEAVLDSLAGKVVVVHYKAIERQFMDKALRVRLNEGIQ----- 167

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L +   I      G     +     S +L    +  G+     H A  D  AT
Sbjct: 168 -FPVVDTLALESHIQTQQYSGFLARLKGKKPGSVRLGKCRIRYGLPAYQPHHALTDALAT 226

Query: 185 LALVWLIREKK 195
             L+       
Sbjct: 227 AELLQAQIAYH 237


>gi|257452752|ref|ZP_05618051.1| exonuclease [Fusobacterium sp. 3_1_5R]
 gi|317059293|ref|ZP_07923778.1| exonuclease [Fusobacterium sp. 3_1_5R]
 gi|313684969|gb|EFS21804.1| exonuclease [Fusobacterium sp. 3_1_5R]
          Length = 186

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 18/197 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +  D ET G         Q A + V+   E  E+    +C P  D     EA+ IT  
Sbjct: 2   KILYLDTETTGL-TYRSTIIQLAAI-VEIDGEIKETIN-LYCAPFPDSDISEEALSITKF 58

Query: 64  TPQKALRDGVV------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           T ++  +            +   +    ++  +  I+  +N++FD    RN  YR     
Sbjct: 59  TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
              S+ +  + +D L   + +            R     + KL+ L  A  I   NAH+A
Sbjct: 119 IA-SYIDFKNEFDTLAFTKCLKIL--------GRLPQTENNKLETLCQAFQIPLENAHNA 169

Query: 178 KADVYATLALVWLIREK 194
            AD  A   L   ++ K
Sbjct: 170 LADTIAAKDLYHYLQNK 186


>gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112]
          Length = 343

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +                  +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14]
          Length = 323

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +                  +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98]
          Length = 334

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +                  +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|254228134|ref|ZP_04921563.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262393911|ref|YP_003285765.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|151939207|gb|EDN58036.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp.
           Ex25]
 gi|262337505|gb|ACY51300.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 239

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 55/194 (28%), Gaps = 12/194 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +           V      ++I        K       D ++V I GIT
Sbjct: 49  FVALDFETTGLNPEKHDIITIGLVPF--NLKRIFLRNSRHWKVRPQRALDEDSVIIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + +       +    + +     +  II  +  R +  +          +   +   +
Sbjct: 107 HSELIDAP----DLGDILSELLPCLSGKIIVVHYRRIEREFLDKALKSRLGEGIEFPVID 162

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                + +   R+   +     + P       S +L       G+     H A  D  AT
Sbjct: 163 TLHLEETIQQKRSGSLWERLKGKKPE------SVRLAQSRRRYGLPDYTPHHALTDAIAT 216

Query: 185 LALVWLIREKKPKL 198
             L+          
Sbjct: 217 AELLQAQIAHHYSE 230


>gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 1106a]
 gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
 gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106a]
 gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
          Length = 381

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +                  +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 381

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +                  +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 324

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 50/185 (27%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  ++D +    +              P P  V+I G+T
Sbjct: 22  YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTL---VNPQRDPGP--VWIHGLT 75

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +  +E +  + Q     +  ++  +N  FD       + R            
Sbjct: 76  SDTLADAPL-FSEIADELAQHL---DGRVLVAHNAVFDWSMLAREYARAG---------- 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                        +                  + KL+ LA   G+    AH A  D    
Sbjct: 122 ---------SAAPVRQRLCTIALSKELGLPLPNHKLESLAAHYGVVQERAHHALDDARVL 172

Query: 185 LALVW 189
                
Sbjct: 173 AETFR 177


>gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894]
          Length = 350

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +                  +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9]
          Length = 352

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +                  +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|33240227|ref|NP_875169.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|33237754|gb|AAP99821.1| DNA polymerase III epsilon subunit [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 236

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 29/191 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              +I D ET G D   D+  +   +    +   I +   F    A++      A  I  
Sbjct: 12  ETLLIVDTETTGLDPEKDQCIEVGAILFHIEKRSILAQNSFLIPAANNP-----AEAINK 66

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+P    R      E  +       + +  ++  +N  FD  +                 
Sbjct: 67  ISPD-LTRFAQPWEEGVKYFLALVDIAD--VLIAHNAEFDRQWFG--------------- 108

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L  +   +  S + I WPS  +      ++DLALA  +   +AH A  D  
Sbjct: 109 ------IPPLPEISKPWVCSMEDISWPSTLNLKGRPSVRDLALAFEVPVWSAHRALTDCI 162

Query: 183 ATLALVWLIRE 193
             + +     +
Sbjct: 163 YLVEIFRRCSD 173


>gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
 gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
          Length = 381

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +                  +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 668]
 gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 668]
          Length = 381

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D ET G   A  R  +                  +           P    +TGIT
Sbjct: 15  LAFVDLETTGGSAAEHRITEI-----GVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ +  +   F   +  +   +N  FD  + R  F R            
Sbjct: 70  DAMVRGAP-TFADIAGAL---FERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D+L  +R   A               +   L  L   + +     H A AD    
Sbjct: 121 -----DVLCTVRLSRALF----------PRESRHGLDALIERHALAPSARHRALADADLI 165

Query: 185 LALVWLIR 192
                 + 
Sbjct: 166 WQFWQKLH 173


>gi|331019245|gb|EGH99301.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 259

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  IVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N F           
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNEFALMGAQDKADI 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                   D L + R  +    +               L  L    G+++     H A  
Sbjct: 121 -TRHCKILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|330963305|gb|EGH63565.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 259

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  IVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N F           
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNEFALMGAQDKADI 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                   D L + R  +    +               L  L    G+++     H A  
Sbjct: 121 -TRHCKILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|213968849|ref|ZP_03396990.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato T1]
 gi|301384105|ref|ZP_07232523.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059179|ref|ZP_07250720.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           K40]
 gi|302135017|ref|ZP_07261007.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926452|gb|EEB60006.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato T1]
          Length = 259

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  IVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N F           
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNEFALMGAQDKADI 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                   D L + R  +    +               L  L    G+++     H A  
Sbjct: 121 -TRHCKILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|28870866|ref|NP_793485.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28854115|gb|AAO57180.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 257

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 9   IVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N F           
Sbjct: 63  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNEFALMGAQDKADI 118

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                   D L + R  +    +               L  L    G+++     H A  
Sbjct: 119 -TRHCKILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 163

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 164 DSEILADVYLAMTGGQTS 181


>gi|327254934|gb|EGE66544.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_7v]
          Length = 243

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMNYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|119471754|ref|ZP_01614114.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Alteromonadales bacterium TW-7]
 gi|119445377|gb|EAW26665.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Alteromonadales bacterium TW-7]
          Length = 237

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 28/201 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M    ++ D ET G D     R  +   V  V+R+     +   F          + EA+
Sbjct: 1   MARRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRL----TGNNFHVYINPQRSIEEEAI 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT +      +   + ++    +       ++ +N      +        N +   
Sbjct: 57  DVHGITNEFLRDKPL-YRDIAQEFFDYIK--GAELVIHNAPFDVGHMD------NEFALL 107

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
              + N +    +LD ++      P                L  L     I++     H 
Sbjct: 108 NQGFPNTHDYCQVLDTLKMARDLHPGQKN-----------NLDALCRRYDIDNAKRTLHG 156

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D      +   +   + K
Sbjct: 157 ALLDSEILADVYLAMTGGQTK 177


>gi|83594940|ref|YP_428692.1| DNA polymerase III, subunit epsilon [Rhodospirillum rubrum ATCC
           11170]
 gi|83577854|gb|ABC24405.1| DNA polymerase III, epsilon subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 230

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D A  DR  +   +        + S          +    PEA  + G++
Sbjct: 4   IVLDTETTGLDPATGDRLVEIGCI---ELINHMPSGNDLHLYVNPERDMPPEAFRVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    F+  + +F +      +  +N  FD  +      R        S   
Sbjct: 61  EAFLADKPL----FAEVVDEFLAFIGEDRLIIHNAAFDMKFLNAELARLKRPPLPMSRA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                  LD +R   A  P                L  L    G++  +   H A  D  
Sbjct: 116 -------LDTLRMAQARFPGAQA-----------SLDALCRRFGVDTSSRTKHGALIDCV 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|120608729|ref|YP_968407.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1]
 gi|120587193|gb|ABM30633.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1]
          Length = 221

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 9/120 (7%)

Query: 1   MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M +   + D+ET G   +   R  + A V +  +   ++  +             P  + 
Sbjct: 1   MPSRIAVIDFETTGMTPSQGARATEVAIVLM-EEGRPVDRFQSLM---RTGAWLPPFIIQ 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGITP         E+   R   +F        +  +N  FD  +      R    +  
Sbjct: 57  LTGITPAMLDTAPPAES-VMREAARFV---GDAPMVAHNASFDSRFWAAELARADLPAPH 112


>gi|239928182|ref|ZP_04685135.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291436512|ref|ZP_06575902.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291339407|gb|EFE66363.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 238

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 61/199 (30%), Gaps = 18/199 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D+  DR    A VR++                    +   +A  I GI  + 
Sbjct: 12  FDLETTGTDIETDRIVTAAVVRLEPDGAVSAE---RTWLLDPGVVIPEQAAAIHGIPTEH 68

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A   GV        I +  +      T ++  N  R+D         R   +S   S   
Sbjct: 69  ARAHGVPAPRAIEEITRAVAEVLRAGTPLVVMNA-RYDLSLLDRECRRYGLESL--SERL 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G     ++D +                        L  L    G+    AHDA+AD  A 
Sbjct: 126 GAVPSPVVDPLVIDKHV---------DQYRKGKRALHALCAYYGVSLDEAHDARADAVAA 176

Query: 185 LALVWLIREKKPKLFEYLY 203
             +V  + EK   +     
Sbjct: 177 ARVVRRMGEKHRHVGTMSL 195


>gi|182683721|ref|YP_001835468.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14]
 gi|182629055|gb|ACB90003.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14]
          Length = 816

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +REK  +L + L +
Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178


>gi|312891424|ref|ZP_07750941.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
 gi|311296118|gb|EFQ73270.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
          Length = 380

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 32/231 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +      +D ET G ++ +DR  + + ++++       + +V   K   +     E+  I
Sbjct: 25  LKRPLAFFDLETTGTNIGVDRIVEISVIKLNPDG----TDDVKTWKINPEMPISIESSMI 80

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  +   V     +  I  F +  +  + GYN+ RFD       F R  +     
Sbjct: 81  HGIYEEHLIDAPV-FKTAAAEISDFIADSD--LAGYNSNRFDIPMLMEEFLRVGHP---- 133

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                       D+ +  +    +      +     +++        G + +NAH A+AD
Sbjct: 134 -----------FDIEQRHFIDVQNIFHQMEQRTLRAAYQF-----YCGKDIINAHSAEAD 177

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231
             AT+ ++     K   +     ++ +K  ++    + ++  L   + +  
Sbjct: 178 TRATMEVLLAQVAKYEGV-----EFEDKKGVKSAPVVNDVEALHKFTNLNN 223


>gi|254485580|ref|ZP_05098785.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101]
 gi|214042449|gb|EEB83087.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101]
          Length = 228

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 57/220 (25%), Gaps = 29/220 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +       ++   +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFDPESGDRIVEIGAVELMGHMATGKTYHQY---INPERGMPDEAFQVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+  +    F       I   +N  FD  +              W+   
Sbjct: 61  DDFLRDKPK-FAQIGQDFLDFIGDSKLII---HNAAFDIKFLNAELKWMGLPQIPWAQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  SP                L  L     I++ +   H A  D  
Sbjct: 116 ----LDTLAIARKRFPGSPA--------------SLDALCRRFNIDNTSRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
               +   +   +   F      + K     +       P
Sbjct: 158 ILAEVYLELIGGRQPDFGLSNQPQRKEGDTSVDWTPKPRP 197


>gi|291542505|emb|CBL15615.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Ruminococcus bromii L2-63]
          Length = 296

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 89/329 (27%), Gaps = 46/329 (13%)

Query: 4   HFVIYDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            +VI D E  G         ++   +   V++D +    ++  +    P        +  
Sbjct: 2   SYVILDLEWNGSYSKVLHKFVNEIIEIGAVKLDDELNVCDTFTML-VAPKIGKKLCSKVK 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +T IT ++   +GV           F           +++            R      
Sbjct: 61  QLTKITNEELKDEGVSFIRAISLFSDFLGDGVLMTWSDSDLHALIENYSYYTGRTRLPFL 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHD 176
               +  +   D LD+                  D +    L   A   G++    + H 
Sbjct: 121 SRYCNLQSYCEDCLDL-----------------HDSSCQLGLGACAEMAGVDFSEDDQHR 163

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
           A ADVY TL  +     K P           K+ +      + +     V+ +       
Sbjct: 164 ALADVYLTLECMKAFYGKYPLKPYI------KDAVCDEFYDRLLFKNHFVTDINS----- 212

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296
                     P    SV+  +     +    L   +L  + FT+    K         V 
Sbjct: 213 ----------PDVDKSVMFFDCEDCGKPLVQLSKWRLHNKSFTAEFSCKYCRKKFNGRVS 262

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCL 325
             +    + +     E  E+     ++  
Sbjct: 263 FKRKFDEVSVKKKLNEKVEKKPETKEQVN 291


>gi|257466613|ref|ZP_05630924.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917768|ref|ZP_07914008.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691643|gb|EFS28478.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
          Length = 186

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 18/197 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +  D ET G         Q A + V+   E  E+    +C P  D     EA+ IT  
Sbjct: 2   KILYLDTETTGL-TYRSTIIQLAAI-VEIDGEIKETIN-LYCAPFPDSDISEEALSITKF 58

Query: 64  TPQKALRDGVV------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           T ++  +            +   +    ++  +  I+  +N++FD    RN  YR     
Sbjct: 59  TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
              S+ +  + +D L   + +            +     + KL+ L  A  I   NAH+A
Sbjct: 119 IA-SYIDFKNEFDTLAFTKCLKIL--------GKLPQTENNKLETLCQAFQIPLENAHNA 169

Query: 178 KADVYATLALVWLIREK 194
            AD  A   L   ++ K
Sbjct: 170 LADTIAAKDLYHYLQNK 186


>gi|225352024|ref|ZP_03743047.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157271|gb|EEG70610.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 196

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 24/193 (12%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +++ D ET G  V    +  +   V++    E ++  +                  +TGI
Sbjct: 22  YIVIDTETTGLSVRKGAKLIEIGAVKIRND-ELVDEFDQL---INPFEHVPSRITGLTGI 77

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                L    V  E      ++ S  +T ++  +N  FD  +  N     + +       
Sbjct: 78  DDGMLLGKPDV-REVMDEFARWCS--DTAVVMAHNASFDMSFLDNAVQLAYSERD----- 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                       R  + F               S K+  L +   I  +  H A +D   
Sbjct: 130 -----------ARFAHHFVDTLDLSRRLHPEKRSHKVSTLIVDYHIADMEEHRALSDARQ 178

Query: 184 TLALVWLIREKKP 196
              L   +R++  
Sbjct: 179 EWMLYRAMRDEAE 191


>gi|258511479|ref|YP_003184913.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478205|gb|ACV58524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 240

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 71/266 (26%), Gaps = 50/266 (18%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G      R  + A V V     + E   V+           PEA  +  IT
Sbjct: 8   FVVVDTETTGLPPE-GRVVELALVEV---GLECEPQIVYSALVDPGCPIPPEASAVHHIT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         ++   ++  +       I+  +N  FD         R         W  
Sbjct: 64  DRDVAGKPR-LSQVWPKVLGYI---GDAILVAHNAEFD---------RGMLPETGRPW-- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADVY 182
                  +   R       D          A     Q L    GI  E    H A  D  
Sbjct: 109 -------ICSKRLAQHLWRD----------APKHSNQVLRYWLGIDVEVGQPHRALGDAI 151

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
            T  +         +      +    + + +LI     +P+   +  FG  +       P
Sbjct: 152 VTAHVF-------QRELRAYLEAGYPDDVDELIAFAE-SPIEVQTMPFGKHKGMPLKEVP 203

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDL 268
           +     Y D  +         +   +
Sbjct: 204 L----DYLDWALRNLQDLSPDLRWSM 225


>gi|323975918|gb|EGB71013.1| DNA polymerase III [Escherichia coli TW10509]
          Length = 243

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMNYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|153208787|ref|ZP_01947019.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161831371|ref|YP_001596268.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
 gi|165920933|ref|ZP_02219603.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334]
 gi|120575749|gb|EAX32373.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161763238|gb|ABX78880.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
 gi|165916781|gb|EDR35385.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334]
          Length = 232

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 59/199 (29%), Gaps = 26/199 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G       R  +   + +        +   F+     +   + +A+ I GIT
Sbjct: 4   IVLDTETTGLVPEEGHRIIEIGALEM-VNRRLTGNHLHFY--INPERSIERDAIEIHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +   +   + +  +  F       I   +N  FD  +  +            +  +
Sbjct: 61  DSFLIDKPL-FKDIATELISFLKGAELII---HNAPFDVGFLNHELKLTGQS--FKTLTH 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +    +               L  L     +++ N   H A  D  
Sbjct: 115 YCQVLDTLTIARQKHPGQHN--------------NLDALCRRYHVDNSNRDYHGALLDAE 160

Query: 183 ATLALVWLIREKKPKLFEY 201
               +  L+   +  LFE 
Sbjct: 161 LLAQVYLLMTGGQTVLFEQ 179


>gi|82751054|ref|YP_416795.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
 gi|123549199|sp|Q2YY51|DING_STAAB RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|82656585|emb|CAI81008.1| probable ATP-dependent DNA helicase [Staphylococcus aureus RF122]
          Length = 897

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G  +  D   Q   +   R  + I++          +    P    +T
Sbjct: 3   MATYAVVDLETTGNQLDFDDIIQIG-ITFVRNIQIIDTYHS---MIRTNLEIPPFIQALT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I      +      + ++ I+        CI   +N+ FD  + +  F           
Sbjct: 59  SIEENMLQQAPY-FNQVAQGIYDNMKD---CIFVAHNVDFDLNFIKKAFKDCNI------ 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L++             +        S++L +LA A+GI   NAH A  D 
Sbjct: 109 QYRPKRVIDTLEI-------------FKIAFPTDKSYQLSELAEAHGITLANAHRADEDA 155

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
             T  L+ L  EK  KL      
Sbjct: 156 ATTAKLMILAFEKFEKLPLDTLK 178


>gi|91974903|ref|YP_567562.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
 gi|91681359|gb|ABE37661.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 231

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 58/186 (31%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +   + ++ + + F      +     EA  + G++
Sbjct: 4   IVLDTETTGLDPLRGDRLVEIGCVEI---YNRMPTGQAFHRYINPERDMPAEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F++ + +F        +  +N  FD  +      R    +       
Sbjct: 61  AEFLADKPL----FAQVVDEFLDFIGDAPLVIHNASFDAGFLNAELARLSRAAIPRERL- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 116 ----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|119476004|ref|ZP_01616356.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2143]
 gi|119450631|gb|EAW31865.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2143]
          Length = 236

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 27/196 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D ET G + +   R  +   V  VDR+          +  P  +   D  A+ + GI
Sbjct: 4   VVLDTETTGLEPSQGHRIIEIGCVELVDRKL--TGRHYHQYINPKRE--IDTGAMEVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +  ++ ++    F +     I   +N  FD  +  + F      S      
Sbjct: 60  TNEFLADKPL-FSQVAQEFLDFVTGAELII---HNAPFDIGFINSEFKLLDSKSPGTMES 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                 D L + R  +    +               L  L     +++     H A  D 
Sbjct: 116 Y-CGVVDTLVMARQKHPGQRN--------------SLDALCSRYEVDNSQRDLHGALLDS 160

Query: 182 YATLALVWLIREKKPK 197
                +  L+   + K
Sbjct: 161 EILADVYLLMTGGQTK 176


>gi|188582299|ref|YP_001925744.1| DNA polymerase III subunit epsilon [Methylobacterium populi BJ001]
 gi|179345797|gb|ACB81209.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 298

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 58/186 (31%), Gaps = 38/186 (20%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEAVFITG 62
            D ET G D   D   + A    +       +   +S +             PE   ITG
Sbjct: 47  VDVETTGLDPQRDEIIELAMTPFNYGLDGTVFSVGDSFQGLR---QPSEPITPEITAITG 103

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +      +  AE ++     F+ P + +I +N      +  R               
Sbjct: 104 ITNEMVAGQVIDPAEVAK-----FAAPASLVIAHNAAFDRRFLERFSD------------ 146

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       + +   ++    Q     +G    KL  LA A G    + H A  D  
Sbjct: 147 ------------VFSTKPWACSLSQIDWAAEGFEGAKLAYLAQAAGF-FYDRHRAMHDCL 193

Query: 183 ATLALV 188
           AT+ L+
Sbjct: 194 ATVELL 199


>gi|86130881|ref|ZP_01049480.1| exonuclease [Dokdonia donghaensis MED134]
 gi|85818292|gb|EAQ39452.1| exonuclease [Dokdonia donghaensis MED134]
          Length = 229

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 60/201 (29%), Gaps = 20/201 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D ET G D   DR     GV V      +  T   F K       +P++  I GI 
Sbjct: 46  FVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQD---FYNPDSAQIHGI- 101

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                +   ++      I Q      T I+  +++ FD         R      +    +
Sbjct: 102 ---LKQGNYLKVNEKEAIAQCLDFIGTDILVGHHVGFDVAVVNQSLKRAGLGRLKNRQLD 158

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                +   +R      + L +LA A  I   + H A  D   T
Sbjct: 159 TE-------------ILYKRLVHPVNRPLQDKRYTLDELAEALKIPLHDRHTAAGDSLIT 205

Query: 185 LALVWLIREKKPKLFEYLYDY 205
                 I  K     E    +
Sbjct: 206 ALAFIKIVHKLNSDGEMKLKH 226


>gi|323938758|gb|EGB35004.1| DNA polymerase III [Escherichia coli E1520]
          Length = 246

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +  GV V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGGVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|30248167|ref|NP_840237.1| DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180052|emb|CAD84052.1| probable DNA polymerase III (epsilon chain) protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 232

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 51/196 (26%), Gaps = 27/196 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +V  D ET G D AL  R  + A V V       +    F          D  A+ + G+
Sbjct: 3   YVFLDTETTGLDPALGHRIVEIAAVEV-CNRRLTDRH--FHRYLNPGRESDEGALRVHGL 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      V   +      +F +      I  +N  FD  +                  
Sbjct: 60  TREFLRDKPV-FQDVCSEFLEFIADAE---IFIHNAPFDVGFINRELD------------ 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
                    + M+       D +             L  L     I+  H   H A  D 
Sbjct: 104 -----LIRFESMQNHCLQIIDTLVLAKELHPGKRNNLDALCERYQIDNSHRTLHGALLDA 158

Query: 182 YATLALVWLIREKKPK 197
                +   +   +  
Sbjct: 159 ELLAEVYLAMTRGQES 174


>gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
 gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
          Length = 253

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 31/204 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D   DP+A+ +
Sbjct: 11  IVLDTETTGMNQFGAHYEGHCIIEIGAV---EMINRRLTGNNFHIYIKPDRPVDPDAIKV 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          E +++  ++       I   +N  FD  +    F +        
Sbjct: 68  HGITDEMLADKP-TFNEIAQQFIEYIQGAELLI---HNASFDIGFMDYEFSKLNIGLNTS 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R +Y                    L  L    GI++     H A 
Sbjct: 124 E---ICLITDTLQMARQMYPG--------------KRNSLDALCDRLGIDNSKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
            D      +   +   +  LF+  
Sbjct: 167 LDAEILADVYLTMTGGQTSLFDES 190


>gi|167623805|ref|YP_001674099.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis
           HAW-EB4]
 gi|167353827|gb|ABZ76440.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 242

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +I D ET G + +        R  +   V V             +         D EA+ 
Sbjct: 11  IILDTETTGMNQSSGPIYLGHRIIEIGCVEV-INRRLTGRHYHEY--INPQQPIDEEAIA 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +          E ++   +F    +   I  +N  FD  +  + F         
Sbjct: 68  VHGITNEFVADKPKFH-EIAQSFIEFI---DGAEIVAHNANFDVSFMDHEFSML------ 117

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
                G    D+  ++        D +             L  L    GI++   + H A
Sbjct: 118 --QPRGPKTADICQIL--------DSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  L+   + K 
Sbjct: 168 LLDAEILADVYLLMTGGQTKF 188


>gi|290476066|ref|YP_003468963.1| DNA polymerase III subunit epsilon [Xenorhabdus bovienii SS-2004]
 gi|289175396|emb|CBJ82199.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Xenorhabdus bovienii SS-2004]
          Length = 249

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 30/204 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V V             + KP  + L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGRHFHLYIKP--ERLVDPEAFEV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +    +F       I   +N  FD  +    F +   D    
Sbjct: 66  HGISDEFLQDKP-TFADIADEFIEFIRGAELII---HNATFDIGFMDYEFRKLNRDIPPT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +  +  D L + R ++                    L  L     I++     H A 
Sbjct: 122 --ADFCTITDSLVLARQLFPG--------------KRNNLNALCDRYQIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
            D      +   +   +  L   +
Sbjct: 166 LDAEILSDVYLTMTGGQTSLTFSM 189


>gi|224372263|ref|YP_002606635.1| exonuclease [Nautilia profundicola AmH]
 gi|223589603|gb|ACM93339.1| exonuclease [Nautilia profundicola AmH]
          Length = 293

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 70/218 (32%), Gaps = 18/218 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             VI D ET G +   DR  Q + + ++    +IE       KP        EA+ +  I
Sbjct: 2   KIVILDTETTG-NKEEDRIIQLSYLVLNENL-EIEEIHDELVKPP--LPISFEAMAVHHI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +++   S +  +  + P   ++ +N   FD    +   + +F+        
Sbjct: 58  TNEMVEDKPLIKHTESYKRLKELNSPENLLVIHNAK-FDLDMLKKEGFNSFFKLIDTFRV 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +   +    ++                      K +D+     I+  NAHDA  DV  
Sbjct: 117 LKHLIPEGKFSLQYNRYALGLY------------KKEKDICEKYNIQI-NAHDALGDVIV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
              L   +     K  E L +   K  L          
Sbjct: 164 LGLLFEYLVTNFEKNVEELVELTTKPVLHDKFYQGKYK 201


>gi|148997118|ref|ZP_01824772.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP11-BS70]
 gi|147756818|gb|EDK63858.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP11-BS70]
          Length = 816

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +   +      ++    
Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K +     L          D  +    L     E +      +  +  ++   
Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L+       + +        +  E   +L   T +                    + ++ 
Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                   ++            + L   F               L E+   YR ++F
Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|227357997|ref|ZP_03842339.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
 gi|227161732|gb|EEI46764.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
          Length = 252

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 52/198 (26%), Gaps = 30/198 (15%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V V            F      + L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPERLVDPEAFEV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         AE +     +       I   +N  FD  +    F +   D    
Sbjct: 66  HGISDEFLEDCP-SFAEIADEFLAYIRGAELII---HNASFDIGFMDYEFQKLNRDIPLT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCQITDSLAMARELFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKP 196
            D      +   +   + 
Sbjct: 166 LDAEILADVYLAMTGGQT 183


>gi|330684981|gb|EGG96656.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU121]
          Length = 902

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G  +  D   Q     V +  + I +          D    P    +T I
Sbjct: 5   TYAVVDLETTGNQLDYDDIIQIGITFVRQN-KIIGTYHS---MIRTDLDIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      E ++ I+Q       C+   +N+ FD  + +  F             
Sbjct: 61  EETMLEQAPY-FKEIAQDIYQQLQD---CVFVAHNVAFDLNFIKKAFKNC---------- 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    ++             +        S++L +LA A+ I   NAH A  D   
Sbjct: 107 ---------NIKYRPKRVMDTLELFKIAFPTDKSYQLSELAEAHDIPLNNAHRADEDATT 157

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+    EK  +L      
Sbjct: 158 TAHLMIKAFEKFEQLPLDTLK 178


>gi|222110838|ref|YP_002553102.1| DNA polymerase iii subunit epsilon [Acidovorax ebreus TPSY]
 gi|221730282|gb|ACM33102.1| DNA polymerase III, epsilon subunit [Acidovorax ebreus TPSY]
          Length = 237

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 30/200 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+   ++ D ET G      DR  +   V  V+R+     +          +     +A+
Sbjct: 1   MSRQ-IVLDTETTGLSAEGGDRIIELGCVELVNRKL----TGNNLHLYLNPERDSHEDAL 55

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GI+ +           F+ R+           +  +N  FD  +             
Sbjct: 56  KVHGISNEFLRDKPK----FAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPL 111

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                      D L + + ++                    L  L    G+++ +   H 
Sbjct: 112 SAHVGG---VIDTLAMAKEMFPG--------------KRNSLDSLCDRLGVDNSSRTLHG 154

Query: 177 AKADVYATLALVWLIREKKP 196
           A  D      +   +   + 
Sbjct: 155 ALLDAELLADVYINMTRGQD 174


>gi|120436251|ref|YP_861937.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117578401|emb|CAL66870.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 223

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 22/205 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63
           F+++D ET G +   DR      VR++    +I ++ EVF  +       +PE V I GI
Sbjct: 39  FIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFLEQKK----FNPETVKIHGI 94

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
              +     + E E  ++   +       ++  ++  FD         RN          
Sbjct: 95  IQNEKFEK-LSELEALKKFLSYIQNS---VLVAHHAGFDMKMINKALSRNGLP------- 143

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  L + +              +  D    + L ++A A  I+ ++ H A  D Y 
Sbjct: 144 ------KLKNKVLDTSILYKKTRIATNFIDRDKIYSLDEIAEAYNIDLIDRHTASGDAYI 197

Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208
           T  +   +  +  K  +       K
Sbjct: 198 TALIFMKLLSRLKKNKDSTLKDIYK 222


>gi|121594487|ref|YP_986383.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
 gi|120606567|gb|ABM42307.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
          Length = 237

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 30/200 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+   ++ D ET G      DR  +   V  V+R+     +          +     +A+
Sbjct: 1   MSRQ-IVLDTETTGLSAEGGDRIIELGCVELVNRKL----TGNNLHLYLNPERDSHEDAL 55

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GI+ +           F+ R+           +  +N  FD  +             
Sbjct: 56  KVHGISNEFLRDKPK----FAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPL 111

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                      D L + + ++                    L  L    G+++ +   H 
Sbjct: 112 SAHVGG---VIDTLAMAKEMFPG--------------KRNSLDSLCDRLGVDNSSRTLHG 154

Query: 177 AKADVYATLALVWLIREKKP 196
           A  D      +   +   + 
Sbjct: 155 ALLDAELLADVYINMTRGQD 174


>gi|294632065|ref|ZP_06710625.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292835398|gb|EFF93747.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 240

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 45/163 (27%), Gaps = 16/163 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A + V R  E     E             P+AV + GI+ ++
Sbjct: 11  FDLETTGTDPRTARIVTAAVIEV-RDGEPAGRREWLA---DPGVPIPPDAVAVHGISTER 66

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G      +  I +  +        +   N  FD         R    S        
Sbjct: 67  AAAEGQPADRVADAIAEALTGYWRAGVPVVAYNAAFDLTLLSAELRRYGLPSLA------ 120

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
               D L          P  I   +         L+ +    G
Sbjct: 121 ----DRLGGAEPGPVVDPYTIDRWADRYRRGKRTLEAVCTEYG 159


>gi|168492961|ref|ZP_02717104.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183577104|gb|EDT97632.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC3059-06]
          Length = 816

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 52/417 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVENG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  +REK  +L + L       +L ++ D       + +   +      ++    
Sbjct: 157 ATAELLLFLREKMTQLPKGLL-----ERLLEMADALLYESYLVIEETYRNQSILSSPDLV 211

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                 +K +     L          D  +    L     E +      +  +  ++   
Sbjct: 212 QVQGLYFKKTAASLELR-----KLSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVS 266

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
           L+       + +        +  E   +L   T +                    + ++ 
Sbjct: 267 LIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKE--VFHTDIHS 324

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
                   ++            + L   F               L E+   YR ++F
Sbjct: 325 LKGPQNYLKLDAFYHSLQENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHF 381


>gi|153832837|ref|ZP_01985504.1| gp41 [Vibrio harveyi HY01]
 gi|148870971|gb|EDL69861.1| gp41 [Vibrio harveyi HY01]
          Length = 207

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 61/214 (28%), Gaps = 16/214 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T + +I D ET G         +F  +  D     +                  +A  I 
Sbjct: 6   TENAIIIDTETTGLGSDA-EIVEFTAICADSGKVIVNEL------VKPTCSIPADATAIH 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +           FS       +     II YN+  FD         ++   +Y  S
Sbjct: 59  GITNEDVKDAPDFHLVFSNHFLPLLN--GRPIIIYNS-DFDTRLIIQSLDKHCNAAYVQS 115

Query: 122 WDNGNSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAK 178
             +   ++ +    M     F      W    +      L +      ++  +  AH A 
Sbjct: 116 VHDLFFKFCIPQCAMLWYAEFFG---VWNEHHEDYKWQSLSNACAQQSVDVSDLTAHRAL 172

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
           AD   T  L+  +  +         D   K  L 
Sbjct: 173 ADCEMTRRLIHAVNSQIENQNNQNCDSVTKPSLE 206


>gi|1794167|dbj|BAA11217.1| unnamed protein product [Vibrio parahaemolyticus]
          Length = 234

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 56/189 (29%), Gaps = 20/189 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D+ET G +  +DR      V +     ++ S                E+V +  I P
Sbjct: 49  LVLDFETTGFNPEVDRVISIGWVEIRNSNIRLNS--ARHVFINHAIDICHESVKVHHIRP 106

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +     G+ E     ++    +     I+  +    +  +             +  + N 
Sbjct: 107 ETLHVSGISEQAAFTQLLDVIA---GKILVAHGCIMEQRFLEQ--------YIKMKYQNL 155

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 LD ++     +             + ++L  +     +    AH+A  D  AT 
Sbjct: 156 KLPLIWLDTLKIEQYRT-------QLRPTRSDWRLSSIRKELNLPTYQAHNALNDAIATA 208

Query: 186 ALVWLIREK 194
            L       
Sbjct: 209 ELYLAQINC 217


>gi|23010300|ref|ZP_00051037.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 236

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 50/189 (26%), Gaps = 32/189 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G D    DR  +   V      E I   +    +             A  + 
Sbjct: 5   IVLDTETTGTDAKNGDRLIEIGCV------ELINHVQTGAYYHQLINPQRPVSEGAFAVH 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+        V    F+  +  F +      +  +N  FD  +    F +         
Sbjct: 59  GISDAMLADKPV----FADVVDAFVAFCGDARLVIHNAPFDVGFLNMEFAKLG--PAAPP 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                   D L + R  +  + +               L  L    G++      H A  
Sbjct: 113 LIVLEDVVDTLLLARRKHPGAAN--------------NLDALCNRYGVDTTRRVKHGALL 158

Query: 180 DVYATLALV 188
           D      + 
Sbjct: 159 DAQILAEVY 167


>gi|311694884|gb|ADP97757.1| exonuclease RNase T and DNA polymerase III [marine bacterium HP15]
          Length = 190

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 25/195 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ VI D ET G     D   + + +          +T             +P A  + G
Sbjct: 17  DNAVIIDTETTGL-TDTDEIVEISVI------NCHGTTL-LDTLIRPSSEINPAAQAVHG 68

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  +         +    + +        ++ YN+        ++   R       +  
Sbjct: 69  ITLAETADAP-TFDQVLPDLLRVIQ--GKTVVMYNSSYDARLIQQSAMKRGCRAPTLYPH 125

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADV 181
                         A+  ++    QW    +      L   A   G+    NAH A  D 
Sbjct: 126 -------------CAMKTYAKFYGQWDDYRESWKWQSLDKAARQCGVTVDGNAHRALTDC 172

Query: 182 YATLALVWLIREKKP 196
           + TL ++  +    P
Sbjct: 173 FTTLGVIKAMAAYNP 187


>gi|163745117|ref|ZP_02152477.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45]
 gi|161381935|gb|EDQ06344.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 54/197 (27%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +       E+   +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFDPESGDRIVEIGAVELMNHMATGETYHQY---INPERGMPEEAFQVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+  +    F       I   +N  FD  +              W    
Sbjct: 61  DDFLRDKPK-FAQIGKSFLDFIGTSKLII---HNAAFDIKFLNAELRWMGLPQIPWEQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L++ R  +  SP                L  L    GI++ +   H A  D  
Sbjct: 116 ----LDTLEIARKRFPGSPA--------------SLDALCRRFGIDNTSRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 158 ILAEVYLELIGGRQPDF 174


>gi|218291538|ref|ZP_03495419.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238658|gb|EED05882.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 240

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 71/267 (26%), Gaps = 52/267 (19%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITGI 63
           FV+ D ET G      R  + A V V  +       ++ +           PEA  +  I
Sbjct: 8   FVVVDTETTGLPPE-GRVVELALVEVGLER----EPQIVYSALVDPGCPIPPEASAVHHI 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +            S+   +        ++  +N  FD         R         W 
Sbjct: 63  TDRDVAGKPR----MSQVWPKVLGYIGDAVLVAHNAEFD---------RGMLPETGRPW- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADV 181
                   L   R +    PD  +  ++           L    GI  E    H A  D 
Sbjct: 109 --------LCSKRLVQHLWPDAPKHANQV----------LRYWLGIDVEVGQPHRALGDA 150

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  +         +      +    + + +L      +P+   +  FG  +       
Sbjct: 151 LVTAHVF-------QRELRAYLEAGYPDDVDELTAFAE-SPIEVQTMPFGKHKGMPLKEV 202

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDL 268
           P+     Y D  +         +   +
Sbjct: 203 PL----DYLDWALRNLQDLSPDLRWSM 225


>gi|170738412|ref|YP_001767067.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46]
 gi|168192686|gb|ACA14633.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 223

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 19/188 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G D   D     A +R+     +I ++E        D    PEA+ +  +  
Sbjct: 32  VALDCETTGLDPRRDEIVAVAAIRIRGD--RILTSESLRATVRSDRPSSPEAIKVHRLLN 89

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            +              + +F       I+GY          +++  +             
Sbjct: 90  AEIREA-EPLDAVLPALLRFI--GGRPIVGYYTEFDVRMLDKSVRRQFGI-------RLP 139

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           N R D+  +  A              D          +    G+  +  HDA  D   T 
Sbjct: 140 NPRIDVSSLYHAAKYRDA-------PDYVKIDLSFARILEDLGLPALPQHDAFNDALMTA 192

Query: 186 ALVWLIRE 193
            +   +R+
Sbjct: 193 MIYLQLRD 200


>gi|88857806|ref|ZP_01132448.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas tunicata D2]
 gi|88819423|gb|EAR29236.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas tunicata D2]
          Length = 252

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 28/194 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G D  L  R  +   V  ++R++    +   F      +   + EA+ + GI
Sbjct: 21  IVLDTETTGIDPKLGHRIIEIGCVELINRRF----TGNNFHVYINPERDIEDEAIDVHGI 76

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T Q                 +FF       +  +N  FD  +  + F R      R  + 
Sbjct: 77  TNQFLRDKPKFHHIA----QEFFDYIQGAELVIHNAAFDVGFMDSEFQR-----LRTGYP 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                  +LD ++      P                L  L     I++     H A  D 
Sbjct: 128 KTAQFCQVLDTLKMARELHPGQKN-----------NLDALCRRYNIDNGKRTMHGALLDS 176

Query: 182 YATLALVWLIREKK 195
                +   +   +
Sbjct: 177 EILSDVYLAMTGGQ 190


>gi|332204813|gb|EGJ18878.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA47901]
          Length = 816

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +REK  +L + L +
Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178


>gi|330878790|gb|EGH12939.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 259

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  IVLDTETTGMPVTDGHRIVEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N F           
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNEFALIGAQDKADI 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                   D L + R  +    +               L  L    G+++     H A  
Sbjct: 121 -TRHCKILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLIREKKPK 197
           D      +   +   +  
Sbjct: 166 DSEILADVYLAMTGGQTS 183


>gi|168486184|ref|ZP_02710692.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570792|gb|EDT91320.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1087-00]
          Length = 816

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +REK  +L + L +
Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178


>gi|331266715|ref|YP_004326345.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5]
 gi|326683387|emb|CBZ01005.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5]
          Length = 830

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 33/212 (15%)

Query: 1   MTN----HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M N     +V+ D E      +  +  Q   V +    + I+               D  
Sbjct: 1   MMNARNDRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGDIIDQYAT---DVNPHEPLDSH 55

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TG+T Q+        ++ + +I +        I   +N++FD        +     
Sbjct: 56  IKELTGLTDQRLAAAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-- 109

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                ++    R D +++ + +Y                  + L  L    GIE  +AH 
Sbjct: 110 -----YELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHT 151

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNK 208
           A +D  AT  L+  +R+K  +L + L +   K
Sbjct: 152 ALSDAQATAELLLYMRQKLFELPKGLLESLLK 183


>gi|15616394|ref|NP_244699.1| hypothetical protein BH3832 [Bacillus halodurans C-125]
 gi|10176457|dbj|BAB07551.1| BH3832 [Bacillus halodurans C-125]
          Length = 265

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 27/200 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V++D ET G      DR      V+V       E  E F+     D +P    + +TG++
Sbjct: 81  VVFDLETSGFYPDQGDRILSIGAVKV-VGLTIQEE-ETFYSVVHTDTVPPENILELTGLS 138

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++               + F    ++ ++ ++      + S   +              
Sbjct: 139 VEELEAAP-PLTSVLESFYAFIR--HSTLVAHHASHEKAFMSHVTWQTMKLPF------- 188

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +   D   + + +                     L D      I   N H A  D   T
Sbjct: 189 EHRVIDTSFLTKIVAP--------------QELVTLDDCCAYYSIPVQNRHHAFEDSLMT 234

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L         +       
Sbjct: 235 AKLWIAAIAAAREAGFETLR 254


>gi|301793959|emb|CBW36355.1| putative exonuclease [Streptococcus pneumoniae INV104]
          Length = 816

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +REK  +L + L +
Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178


>gi|317047021|ref|YP_004114669.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b]
 gi|316948638|gb|ADU68113.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b]
          Length = 243

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 54/211 (25%), Gaps = 30/211 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHIYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +         ++ +     +        +  +N  FD  +    F     D  + 
Sbjct: 66  HGIADEFLADKP-SFSDIADEFLDYIRGAE---LVIHNASFDIGFMDYEFAMLKRDIGKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D    +    A +                 L  L     I++     H A 
Sbjct: 122 ---------DTFCQVTDSLAMARKMF-------PGKRNSLDALCSRLEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
            D      +   +   +  L   +   ++  
Sbjct: 166 LDAEILAEVFLTLTGGQTSLAFSMESEQSNQ 196


>gi|225861294|ref|YP_002742803.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230625|ref|ZP_06964306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255368|ref|ZP_06978954.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503192|ref|YP_003725132.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|225726410|gb|ACO22261.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238787|gb|ADI69918.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 816

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +REK  +L + L +
Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178


>gi|15900695|ref|NP_345299.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae TIGR4]
 gi|111658147|ref|ZP_01408844.1| hypothetical protein SpneT_02000672 [Streptococcus pneumoniae
           TIGR4]
 gi|149021672|ref|ZP_01835703.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72]
 gi|14972279|gb|AAK74939.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus pneumoniae TIGR4]
 gi|147930133|gb|EDK81119.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72]
          Length = 816

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +R+K  +L + L +
Sbjct: 157 ATAELLLFLRKKMTQLPKGLLE 178


>gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 314

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 51/185 (27%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D + E  +     +     +  P P  V+I G+T
Sbjct: 10  YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHW---YTTVNPERDPGP--VWIHGLT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + +             ++  +N  FD       + R   ++       
Sbjct: 64  SDVLEGAPL-FKDVAAEFAARLE---GRVLVAHNAVFDWQMIAREYARARGEAP------ 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                        +                  + KL+ LA   G+    AH A  D    
Sbjct: 114 -------------VRQRLCTIALSKELKLPLPNHKLESLAAHFGVVQRRAHHALDDARVL 160

Query: 185 LALVW 189
                
Sbjct: 161 AEAFR 165


>gi|303255784|ref|ZP_07341825.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS455]
 gi|303260270|ref|ZP_07346241.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP-BS293]
 gi|303261476|ref|ZP_07347424.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP14-BS292]
 gi|303264144|ref|ZP_07350065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS397]
 gi|303266246|ref|ZP_07352137.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS457]
 gi|303268684|ref|ZP_07354474.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS458]
 gi|301801646|emb|CBW34344.1| putative exonuclease [Streptococcus pneumoniae INV200]
 gi|302597168|gb|EFL64273.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS455]
 gi|302637610|gb|EFL68097.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP14-BS292]
 gi|302638594|gb|EFL69058.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP-BS293]
 gi|302641744|gb|EFL72101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS458]
 gi|302644176|gb|EFL74432.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS457]
 gi|302646549|gb|EFL76775.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS397]
          Length = 816

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +REK  +L + L +
Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178


>gi|312131463|ref|YP_003998803.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311908009|gb|ADQ18450.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 270

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 10/166 (6%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +     I D ET G ++  DR  +    + +         E    K         E   I
Sbjct: 8   LKKPLAIIDLETTGVNITRDRIVEICIAKANLDGTV----ETRTKKVNPTIPIPLETSLI 63

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR---NFYDS 117
            GI  +    +     + +R + QF       + G+N+ RFD       F R   N +D 
Sbjct: 64  HGIYDEDVANEP-TFKQLARSLAQFLE--GCDLAGFNSNRFDIPMLVEEFLRVDSNLFDI 120

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
                 +    + L++      A+     +       A +  L  L
Sbjct: 121 KNRKLIDVQRIFHLMEPRTLSAAYKFYCQKTLENAHSAEADTLATL 166


>gi|269837944|ref|YP_003320172.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787207|gb|ACZ39350.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
          Length = 197

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 49/179 (27%), Gaps = 24/179 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       + A   VD Q   +  T V   +P       PE   I GIT 
Sbjct: 25  LFLDTETTGLD-GQAEIVEIA--VVDAQGTVLLDTLVRPLRP-----IPPEVQAIHGITD 76

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          E    + + F      ++   N  FD         ++        W   
Sbjct: 77  RMVAGAPR-WPEVHAELVRLFRERPRAVV--YNAAFDRRVIAQTAQQHCLPPPTAEW--- 130

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                    M    A++ +              +L   A A GI     H A  D    
Sbjct: 131 ------HCAMLRYAAYAGERH---PVTGKYRWHRLDRAAAALGIPR-PTHRALGDALVC 179


>gi|269960617|ref|ZP_06174989.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3]
 gi|269834694|gb|EEZ88781.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3]
          Length = 238

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           N  V+ D ET G ++         R  +   V +    +       F      D    P+
Sbjct: 10  NRIVVLDTETTGMNLEGGPHYMGHRIVEIGAVEI-INRKLTGRH--FHVYLKPDREIQPD 66

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +  +       E+S    +F        +  +N  FD  +    F     +
Sbjct: 67  AIGVHGITDEFLVDKP----EYSAVHQEFLDFIKGAELVAHNAPFDTGFMDYEFE--MLN 120

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                 D+     D L + + I+                    L  L    GI+  H   
Sbjct: 121 PSIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDVLCERYGIDNSHRTL 166

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 167 HGALLDAEILADVYLLMTGGQTS 189


>gi|89900967|ref|YP_523438.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89345704|gb|ABD69907.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 233

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G      DR  +   V     +++  +                +A+ + GIT
Sbjct: 4   IFLDTETTGLSADTGDRIIEIGCV---ELFKRKLTGNNKHFYLNPGRESHEDALRVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     EA  +  +  +       I   +N  FD  +                 + 
Sbjct: 61  SAFLKDKPKFEA-VADELLAYVKDAEIII---HNAPFDLGFLNKELALLGRP---RFKEF 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             S  D L + + ++                    L  L    G+++     H A  D  
Sbjct: 114 VGSVTDTLVMAKEMFPG--------------KRNSLNALCDRLGVDNSGRALHGALLDAE 159

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 160 LLADVYINLTRGQD 173


>gi|195542024|gb|ACF98221.1| putative DNA polymerase III epsilon subunit [uncultured bacterium
           1114]
          Length = 312

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 58/184 (31%), Gaps = 26/184 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G D   DR      VR+     ++  +  F             A  I GI    
Sbjct: 31  LDTETTGLDPGRDRIVAIGAVRL--HGRRLYPSRTFETLVRPGISIPASASAIHGIGDAM 88

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                 + AE   R+  + +     ++G++   FD         R+ +     SW    +
Sbjct: 89  VAGAPGM-AEIWPRLSPWLA--GRVVLGHHV-DFDLAMIGAAARRHGF-----SWTEPFA 139

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
               LD  R + A            DG++   L + A  +G+     H A  D      +
Sbjct: 140 ----LDTARLVAAL-----------DGSSPVDLDEAAQRHGVTLEGRHSALGDSLIAARV 184

Query: 188 VWLI 191
              +
Sbjct: 185 YLRL 188


>gi|254507936|ref|ZP_05120065.1| exonuclease, RNase T and DNA polymerase III [Vibrio
           parahaemolyticus 16]
 gi|219549172|gb|EED26168.1| exonuclease, RNase T and DNA polymerase III [Vibrio
           parahaemolyticus 16]
          Length = 239

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 12/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+  D+ET G D   D       V        I   + +  +P      + ++V I GI
Sbjct: 48  TFLAMDFETTGLDSEQDDIITIGTVPFTLNRVLINQAKHWTVRPRKQL--EEDSVIIHGI 105

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    L       + S    +  +  +  I+  +  R +  +          +       
Sbjct: 106 THSDVLDAP----DLSEVFAEILAQMHGRIMVVHYQRIEREFFNRALLTRINEGIE---- 157

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + +   +   S  G+    +     S +L       G+     H A  D  A
Sbjct: 158 --FPVVDTMQLETLVQQKSNGGLLNRLKGRKPASVRLSASRSRYGLPQYTPHHALTDAVA 215

Query: 184 TLALVWLIREKKPK 197
           T  L+        +
Sbjct: 216 TAELLQAQIAYHYE 229


>gi|315637226|ref|ZP_07892446.1| exonuclease [Arcobacter butzleri JV22]
 gi|315478498|gb|EFU69211.1| exonuclease [Arcobacter butzleri JV22]
          Length = 247

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 24/201 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     DR  QF  + VD + +  E+ +     P        EA+ +  IT
Sbjct: 4   YVLFDTETTGA-AQEDRVIQFGAMIVDNKGKV-EAFDELCSAPIP---IKLEAMEVHNIT 58

Query: 65  PQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           P          E  F +R+ +  S  N   +  +NI FD    +   + N          
Sbjct: 59  PDLLENKPKAVETNFYKRLEELNSDEN--YLIAHNINFDLDMIKKEGFEN---------- 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDG--IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                + L+D +R       D    +          +K ++   +     + AHDA  DV
Sbjct: 107 ----SYKLIDTLRCAKHLFSDLPYHRLQYLRYALDLYKFEENEASKYGITIKAHDAIGDV 162

Query: 182 YATLALVWLIREKKPKLFEYL 202
                 +  +  K  +++  L
Sbjct: 163 LVMKLFLSKLVGKCREVYPSL 183


>gi|313206803|ref|YP_004045980.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer DSM
           15868]
 gi|312446119|gb|ADQ82474.1| DNA polymerase III, epsilon subunit [Riemerella anatipestifer DSM
           15868]
 gi|315023876|gb|EFT36878.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM]
 gi|325335757|gb|ADZ12031.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
           [Riemerella anatipestifer RA-GD]
          Length = 407

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 102/345 (29%), Gaps = 38/345 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D E+ G     +   + A  R D   + ++           +         +TGIT
Sbjct: 2   YSVIDIESNGGAFREECIIEVAIYRYDGH-KIVDQF---ISMVNPEADISHFVQKLTGIT 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          E ++RI +         +  +N+ FD    R  F R  Y         
Sbjct: 58  PKMVKTAPKFH-EIAKRIIEITE---GSTLVGHNVDFDYRMLRQSFKRLGY--------- 104

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +   + LD +                     S+ L  L  + GI     H A +D  AT
Sbjct: 105 -HFSIETLDTIPLAKKL----------IPNEESYSLGKLVKSLGIPLAEHHRASSDARAT 153

Query: 185 LALVWLIREKKPKLF---EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL-- 239
           L L  L+  K         +  +   K    K+  +    P       F  +R    L  
Sbjct: 154 LDLFKLLMTKDKDNEIIQSHFEEANAKTYFNKIKALTQDLPAERGIVYFQDARGKVILSE 213

Query: 240 ----IAPVAWHPRYKDSVIGCNLSGDMR-VFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
               I   A       S     +  ++  +  +L + +L  +L  +   L     +P   
Sbjct: 214 VTDGIYKFAKKVFNAKSKKWQKIQNEVEQISYELVASELFAKLIMNTKGLAKTTHLPYGL 273

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339
              N   ++  +              H +  + L  ++    L +
Sbjct: 274 FFENDEWLVKRVRRDMPLLPMIKFKTHSQGRKVLNFIKNHEVLNN 318


>gi|241763763|ref|ZP_04761810.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
 gi|241366982|gb|EER61378.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
          Length = 237

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 57/200 (28%), Gaps = 30/200 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+   ++ D ET G      DR  +   V  V R+     +          +     +A+
Sbjct: 1   MSRQ-IVLDTETTGLSAEGGDRIIEIGCVELVSRKL----TGNNKHFYLNPERDSHEDAL 55

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GI+ +         A  +  + ++       I   +N  FD  +           + 
Sbjct: 56  KVHGISNEFLRDKPK-FAAVADELLEYLQGAEVII---HNAAFDVGFLNKELELLGRPAL 111

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                  +S  D L + + +Y                    L  L    G+++     H 
Sbjct: 112 ---HTFVDSVTDTLAMAKELYPG--------------KRNSLDALCDRLGVDNSGRTLHG 154

Query: 177 AKADVYATLALVWLIREKKP 196
           A  D      +   +   + 
Sbjct: 155 ALLDAELLADVYINLTRGQD 174


>gi|329118044|ref|ZP_08246757.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465932|gb|EGF12204.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 247

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 57/194 (29%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +FAG+ + R+    E T   +     D     EA  + GIT
Sbjct: 7   IILDTETTGLYSDRGDRILEFAGIEM-RKRRLTERTLHLY--IHPDRDIPEEAAAVHGIT 63

Query: 65  PQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                       A   + I  F       I   +N RFD  +    F R    +      
Sbjct: 64  LDTLAEKNAPKFAAVGQEIADFLRGAELII---HNARFDVGFLDMEFERMGLPTIEE--- 117

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
            G    D L + R  Y                    L  L     I+      H A  D 
Sbjct: 118 LGCEVTDTLAMAREKYPGQKA--------------SLDALCGRLDIDRSKRVYHGALIDC 163

Query: 182 YATLALVWLIREKK 195
                +   +  ++
Sbjct: 164 ELLAEVYLAMTREQ 177


>gi|126695985|ref|YP_001090871.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543028|gb|ABO17270.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9301]
          Length = 259

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 29/191 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              +I D ET G D   D   +   +  D  ++ + S   F     ++     +A ++ G
Sbjct: 36  EKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNN-----KAEYVNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +         +      +     +   I  +N+ FD  +                 
Sbjct: 91  IS-AEVTNISQPWEDGLNFFLKLVDSSD--FIVAHNVEFDKKWFGKGR------------ 135

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L  +   +  S + I W  +        + DLAL+  I   N H A +D +
Sbjct: 136 ---------LPKLNKKWICSLEDINWSFQKSLKNRPSVTDLALSFSIPVWNLHRALSDCF 186

Query: 183 ATLALVWLIRE 193
               +      
Sbjct: 187 YISEVFKKCDN 197


>gi|50122261|ref|YP_051428.1| DNA polymerase III subunit epsilon [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612787|emb|CAG76237.1| DNA polymerase III, epsilon chain [Pectobacterium atrosepticum
           SCRI1043]
          Length = 245

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 60/224 (26%), Gaps = 30/224 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  I
Sbjct: 9   IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYIKPDRLVDPEAYNI 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +     F        +  +N  FD  +     +R    +   
Sbjct: 66  HGISDEFLADKP-TYADVADDFLDFIRGAE---LVIHNATFDIGFMDYE-FRLLNRNIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R I+                    L  L     I++     H A 
Sbjct: 121 TETF-CKITDSLFMARKIFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
            D      +   +   +  L   +     +         + + P
Sbjct: 166 LDAEILAEVYLAMTGGQTSLTFSMEGEAQRQNESNETIQRIVRP 209


>gi|332202666|gb|EGJ16735.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA41317]
          Length = 816

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +REK  +L + L +
Sbjct: 157 ATAELLLFLREKMTQLPKGLLE 178


>gi|224541223|ref|ZP_03681762.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525868|gb|EEF94973.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM
           15897]
          Length = 212

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 70/212 (33%), Gaps = 34/212 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--------- 52
            + +++ D E  G +   +R  + A ++     +++           D            
Sbjct: 12  PDTYIVVDIEATGLNPETERLIEVAAIKY-INHKEVARFSELINPLRDQLPVDLLDKDKT 70

Query: 53  --PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
                    +TGI+ +        E +  R   +F       +I  +N+RFD  +     
Sbjct: 71  IYISDFIENLTGISNRMLHDA-RGEKDVLREYIKFI---GNDVIIGHNVRFDIRF----I 122

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
           Y      Y   + N     D +D ++       +             ++L+DLA    I+
Sbjct: 123 YDALLRDYGVLFQN-----DYIDTLKIARKLLHE---------DLKRYRLKDLADHYHID 168

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
           + +AH A  D   T  +  ++ E     F  +
Sbjct: 169 YSHAHRAVNDCEITHDVYEMMMEDIFNNFGTI 200


>gi|254472171|ref|ZP_05085571.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
 gi|211958454|gb|EEA93654.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
          Length = 236

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 29/194 (14%)

Query: 8   YDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           +D ET G +    DR  +  GV +   +     T   +  P  D     EA  I G++ +
Sbjct: 6   FDTETTGLNPLDGDRLVEIGGVEL-INFIPTGRTCHLYVNPQRDM--PEEAFRIHGLSAE 62

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  A+ +     F        +  +N  FD  +      R        +     
Sbjct: 63  FLSDKPV-FADVADEFLDFV---GDARLVIHNAPFDMGFINMELARCNKPKISNTQ---- 114

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYAT 184
              D L + R  +                 S  L  L    GI++     H A  D    
Sbjct: 115 -VLDTLKLARRKFP--------------TGSVSLDALCSRYGIDNSKRVYHGALLDAELL 159

Query: 185 LALVWLIREKKPKL 198
             +   +   K K 
Sbjct: 160 AEVYLEMNGGKQKN 173


>gi|88813349|ref|ZP_01128587.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231]
 gi|88789407|gb|EAR20536.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231]
          Length = 245

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 63/240 (26%), Gaps = 37/240 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D ET G +     R  +     +               F      D   +P A+ + 
Sbjct: 4   IVLDTETTGLEPADGHRVIEIGCYELCYRRASGR------TFHHYLNPDREVEPGAIEVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +          + +    +F       I   +N  FD  +    F R         
Sbjct: 58  GITNEFLADKPR-FCDIATDFIEFIRDAELII---HNAPFDVGFLDYEFSRL-------- 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                 R      +    A + +               L  L     +++     H A  
Sbjct: 106 -TGSWGRLADYCQVTDTLALARERH-------PGQRNSLDALCTRYAVDNAQRSLHGALL 157

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKN-----QLRKLIDIQNMTPLVHVSGMFGASR 234
           D      +  L+   +  L        + +      +R+L   +   P+V  S    A  
Sbjct: 158 DAQLLAEVYLLMTGGQTALSLESGAGLSADLALVGGVRRLDPARPRLPVVRASSAEQAEH 217


>gi|288921215|ref|ZP_06415500.1| stress protein [Frankia sp. EUN1f]
 gi|288347369|gb|EFC81661.1| stress protein [Frankia sp. EUN1f]
          Length = 622

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 50/181 (27%), Gaps = 28/181 (15%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70
           ET G     DR    A V+V       E              P P  V I G+T +    
Sbjct: 2   ETSGLAADRDRILSIAVVQVGADGAVGERWTTL---LDPGCDPGP--VHIHGLTRELLAG 56

Query: 71  DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130
                  F+  + +  S     ++  +N  FD  +      R   +           R  
Sbjct: 57  SPT----FADVVDELASRLAGRVMVAHNASFDWRFLTAEAVRAGRELP------TERRMC 106

Query: 131 LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWL 190
              + R               D     F+L  +A    +     HDA AD      ++  
Sbjct: 107 SCVLAR-------------RLDLPVPDFRLATIADFWAVPFERQHDALADAMVVAEVLPR 153

Query: 191 I 191
           +
Sbjct: 154 M 154


>gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
 gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
          Length = 896

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 29/217 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAVF 59
           V++D ET G DV  D   + A +++ +  E +      + K     LP      +P    
Sbjct: 515 VVFDTETTGLDVFADDIIEIAAMKI-KGGEIVGEPLDLYIKTDKPILPKLGDKDNPMYA- 572

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
              I  +K   + ++  +    + +F +   T  I  +N  +D     N   R   D+ +
Sbjct: 573 ---IYHEKLSAEELITPQ--EALQRFLAYIGTRPILGHNASYDYNIIDNCLQRYCNDTLK 627

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                 N  +D L ++R                    S+KL+ L     +   N+H A  
Sbjct: 628 AH---KNPCFDSLKLIRL-------------LSPSLHSYKLESLLETFQLTGKNSHQAID 671

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
           DV AT++LV L  EK  +       +    +++  I+
Sbjct: 672 DVGATVSLVRLCAEKAREKQPQQQSFLQHPKVKPFIN 708


>gi|145579465|pdb|2GUI|A Chain A, Structure And Function Of Cyclized Versions Of The
           Proofread Exonuclease Subunit Of E. Coli Dna Polymerase
           Iii
          Length = 194

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|238022806|ref|ZP_04603232.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147]
 gi|237866009|gb|EEP67145.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147]
          Length = 244

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 64/199 (32%), Gaps = 37/199 (18%)

Query: 6   VIYDYETFGR------DVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           +I D ET G       +   DR  +FAG+  V+RQ  +                   EA 
Sbjct: 9   IILDTETTGFYHSAAENP--DRLIEFAGLEMVNRQLTE----NTLHLYIHPQRDIPAEAA 62

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GIT  +     V  A+ +++I  F       I   +N +FD  +    F R      
Sbjct: 63  AIHGITLDQLEGKPV-FAQVAQQIFDFLKGAELII---HNAKFDIGFLNAEFARVGLPPI 118

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
               D+  S  D L++ R  Y    +               L  L    G++      H 
Sbjct: 119 ----DSVCSVIDTLEMARNKYPGQKN--------------NLDALCNRLGVDRSRRVLHG 160

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +   +
Sbjct: 161 ALIDCELLGGVYLAMTRNQ 179


>gi|229816213|ref|ZP_04446523.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM
           13280]
 gi|229808221|gb|EEP44013.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM
           13280]
          Length = 977

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 58/186 (31%), Gaps = 31/186 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G         + A  R+ R  E ++  + F        L   E   +T IT 
Sbjct: 48  IVLDTETTGLSHRDSELIEIAAARL-RGREIVDRFDTF---VKPSGLIPEEITKLTSITN 103

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      +    + +F      C +  +N  FD         R F +      D  
Sbjct: 104 VDVAHAP-SAVDAVASLAEFV---GGCPVVAHNAAFD---------RGFIEQVPGGADVS 150

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +   D L + R                    S KL  +A   G E   +H A ADV A  
Sbjct: 151 DIWIDSLALSRIA-------------LPRLASHKLAVMAELFGCE-SVSHRANADVEALC 196

Query: 186 ALVWLI 191
            +  ++
Sbjct: 197 GVWRIL 202


>gi|70726458|ref|YP_253372.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
 gi|123660231|sp|Q4L6F9|DING_STAHJ RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|68447182|dbj|BAE04766.1| probable ATP-dependent DNA helicase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 900

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G  +  D   Q     V    +   +          D    P    +T I
Sbjct: 5   SYAVVDLETTGNQLDYDEIIQIGITFVSNN-KISGTYHS---MIRTDLDIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      E ++ I++        +   +N+ FD  + +  F     D       
Sbjct: 61  EDTMLEQAPYFH-EIAQEIYKQLKDR---VFVAHNVDFDLNFIKKAFQNCNIDF------ 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ +  Y                 S++L +LA A+ I   NAH A  D   
Sbjct: 111 KPKKVLDTLELFKIAY-------------PTDKSYQLSELAEAHDIPLDNAHRADEDATT 157

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+    +K  +L      
Sbjct: 158 TALLMIKAFQKFEQLPIDTLK 178


>gi|328480154|gb|EGF49106.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 106

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 4   HFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F + D ET G      DR  QF    V R  + I   +        D         +TG
Sbjct: 6   TFAVVDLETTGTSVKDGDRMIQFGCALV-RHGKII---QTISQMINPDRSVPQTIQRLTG 61

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
           I+P++ +       E +  +HQ  +     +   +N+ FD  +    F
Sbjct: 62  ISPERLVAAPY-FDEVAPALHQVLTK---TVFVAHNVNFDYPFLNAEF 105


>gi|315612858|ref|ZP_07887769.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sanguinis ATCC 49296]
 gi|315314968|gb|EFU63009.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sanguinis ATCC 49296]
          Length = 830

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 33/198 (16%)

Query: 1   MTN----HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M N     +V+ D E      +  +  Q   V +    E I+               D  
Sbjct: 1   MMNARNDRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIIDQYAT---DVNPHEPLDSH 55

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TG+T Q+        ++ + +I +        I   +N++FD        +     
Sbjct: 56  IKELTGLTDQRLAAAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-- 109

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                ++    R D +++ + +Y                  + L  L    GIE  +AH 
Sbjct: 110 -----YELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHT 151

Query: 177 AKADVYATLALVWLIREK 194
           A +D  AT  L+  +R+K
Sbjct: 152 ALSDAQATAELLLYMRQK 169


>gi|261749200|ref|YP_003256885.1| DNA polymerase III epsilon chain [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497292|gb|ACX83742.1| putative DNA polymerase III epsilon chain [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 255

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 78/251 (31%), Gaps = 28/251 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D E  G ++  DR  + + +++     + + T + F     +    P++  I GI 
Sbjct: 9   ICFFDIEATGVNIGKDRIIEISILKIFPNGNQEDKTWLIF----PEIPIPPKSTAIHGIK 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   + +  I +     N  + GYN+ RFD         R            
Sbjct: 65  DEDVAGQ-LPFKDVAIHIFRMIE--NADLAGYNSNRFDIPILVEEMLRAGISFDIKKHKT 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            + +                   +   +    S   +     N    + AH +KAD +AT
Sbjct: 122 IDVQV-----------------IFHKMEPRTLSAAYKYYCKKN---LIKAHSSKADTFAT 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL-VHVSGMFGASRSNTALIAPV 243
             ++    EK   L + +      +  + L D+     +    + +F   +     +  +
Sbjct: 162 YEILLAQLEKYQDLKQDVKSLNQFSHQKNLADLAGFVKIDEEGNEIFNFGKYKGEKVYEI 221

Query: 244 AWHPRYKDSVI 254
                     I
Sbjct: 222 FEKDPNYYGWI 232


>gi|255531786|ref|YP_003092158.1| exonuclease RNase T and DNA polymerase III [Pedobacter heparinus
           DSM 2366]
 gi|255344770|gb|ACU04096.1| Exonuclease RNase T and DNA polymerase III [Pedobacter heparinus
           DSM 2366]
          Length = 328

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +      +D ET G +V  DR  + A ++      ++    +   +   +      A  I
Sbjct: 5   LKRPLAFFDLETTGVNVGADRIVEIAILKAMPDGSEL----IKTMRINPEMPIPLYASLI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            GI  +    +  +  E +  +  F    +  + GYN+ RFD       F R   D 
Sbjct: 61  HGIYDEHIANEP-IFKEVATELADFIGDAD--LAGYNSNRFDIPVLLEEFLRAGVDF 114


>gi|227892520|ref|ZP_04010325.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Lactobacillus ultunensis DSM 16047]
 gi|227865641|gb|EEJ73062.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Lactobacillus ultunensis DSM 16047]
          Length = 370

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 75/207 (36%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++                  V +
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYS---FMINPHREIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  +   ++   +  ++ +I +        +   +N+ FD  +      ++ YD+   
Sbjct: 63  TGIHNEDVAKEKDFKF-YAPKIVKILQN---AVFVAHNVDFDLPFLNYELTQHGYDAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL     I+H+N H A +D
Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTSQLEIKHLNPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
            Y T  L+  I ++  KL +   +  +
Sbjct: 160 AYGTAILLIKIIKQLEKLPQATLNTLS 186


>gi|328943468|ref|ZP_08240933.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829]
 gi|327491437|gb|EGF23211.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829]
          Length = 1011

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 57/222 (25%), Gaps = 31/222 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G     D+  Q A V++  +    +    F                +T I 
Sbjct: 53  IVALDTETTGLSHKNDQLTQIAAVKL-EEGSVADEFTTF---VNPSRPIPHNIEKLTNIY 108

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     +   + R+  F        I  +N  FD  +                   
Sbjct: 109 SVDVEHAPTPQTAVA-RLADFVE---LDPILAHNASFDRAFIEAAQNDTCVSDTW----- 159

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R  +                TS KLQDLA   G E    H A  D  A 
Sbjct: 160 ----IDTLALSRIAF-------------PALTSHKLQDLAYIFGCE-SVTHRANDDCTAL 201

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
             +   I      + + +     +         + +   +  
Sbjct: 202 AGVWHYILAGICDIPQQILTTLVEAHNEVNWPYRFIFSYILH 243


>gi|222099149|ref|YP_002533717.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
           4359]
 gi|281411717|ref|YP_003345796.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
           RKU-10]
 gi|221571539|gb|ACM22351.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
           4359]
 gi|281372820|gb|ADA66382.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
           RKU-10]
          Length = 186

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 28/185 (15%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G D    DR  + A V V +   KI S   F                + GI
Sbjct: 8   FCVVDTETTGTDPFGGDRIIEIAAVPVFKG--KIFSNRAFHSLVNPHVRIPALIQKVHGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + ++         +      +F       ++ ++N  FD  +   +           ++ 
Sbjct: 66  SNEEVEEAP----DMGTVYERFRDYVKGTVLVFHNANFDLTFLDMMAKE------TRNFP 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N+  D LD+ + ++                    L+ L    GI     H A +D   
Sbjct: 116 LTNAYIDTLDISQEVFG---------------RPHSLKWLCEKLGIRDKIEHRALSDALV 160

Query: 184 TLALV 188
           T  + 
Sbjct: 161 TAKVF 165


>gi|218670823|ref|ZP_03520494.1| DNA polymerase III subunit epsilon [Rhizobium etli GR56]
          Length = 164

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 8/105 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           VI D ET G +   D   +   V    D      +   ++           PE   +TGI
Sbjct: 65  VILDTETTGLNHRNDEIIEIGAVAFTFDDDRAIGDIVGIYGGLQQPSRPIPPEITRLTGI 124

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
           T        +      R +          +I  +N  FD  +   
Sbjct: 125 TDAMVEGQVID----MRSLSALIE--PADLIIAHNAGFDRPFCEA 163


>gi|15902755|ref|NP_358305.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae R6]
 gi|116516668|ref|YP_816199.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae D39]
 gi|15458302|gb|AAK99515.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6]
 gi|116077244|gb|ABJ54964.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae D39]
          Length = 816

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +REK  +L + L +
Sbjct: 157 ATAELLLFLREKMAQLPKGLLE 178


>gi|282859398|ref|ZP_06268505.1| exonuclease [Prevotella bivia JCVIHMP010]
 gi|282587832|gb|EFB93030.1| exonuclease [Prevotella bivia JCVIHMP010]
          Length = 287

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 7/159 (4%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   +I+D ET G D+  DR  Q + ++      + E   +F      +     E + +
Sbjct: 5   LTRPLIIFDLETTGLDLVNDRIIQISYIKAYPDGRE-ERENIF---INPEKQIPEEVIAL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT            E  + + Q F+       G+N+ RFD       F R   +    
Sbjct: 61  TGITNADVAEAP-TFKEKGKELAQKFA--GCDFAGFNSNRFDVPMLAEEFLRAGVEFDFS 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                +++     + R   A + +       +D   + +
Sbjct: 118 KCKLIDAQNIFHKMERRNLAAAYEFYCGRKMEDDFEAHR 156


>gi|24987377|pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
           Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5
 gi|24987378|pdb|1J54|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
           Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 5.8
 gi|119390109|pdb|2IDO|A Chain A, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
           Complex
 gi|119390111|pdb|2IDO|C Chain C, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
           Complex
          Length = 186

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|289809670|ref|ZP_06540299.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 187

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 56/199 (28%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L   V    F+  + +F        +  +N  FD  +    F     D  + 
Sbjct: 69  HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +   +   +  
Sbjct: 169 LDAQILAEVYLAMTGGQTS 187


>gi|308234071|ref|ZP_07664808.1| DNA polymerase III, epsilon subunit [Atopobium vaginae DSM 15829]
          Length = 1008

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 57/222 (25%), Gaps = 31/222 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G     D+  Q A V++  +    +    F                +T I 
Sbjct: 50  IVALDTETTGLSHKNDQLTQIAAVKL-EEGSVADEFTTF---VNPSRPIPHNIEKLTNIY 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     +   + R+  F        I  +N  FD  +                   
Sbjct: 106 SVDVEHAPTPQTAVA-RLADFVE---LDPILAHNASFDRAFIEAAQNDTCVSDTW----- 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R  +                TS KLQDLA   G E    H A  D  A 
Sbjct: 157 ----IDTLALSRIAF-------------PALTSHKLQDLAYIFGCE-SVTHRANDDCTAL 198

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
             +   I      + + +     +         + +   +  
Sbjct: 199 AGVWHYILAGICDIPQQILTTLVEAHNEVNWPYRFIFSYILH 240


>gi|258624472|ref|ZP_05719419.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
           VM603]
 gi|258583319|gb|EEW08121.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
           VM603]
          Length = 233

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 54/191 (28%), Gaps = 13/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D+ET G +   D       V  + Q   +   + +  +P      +  +V I GIT
Sbjct: 44  LVALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPT--KPLEEGSVVIHGIT 101

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +       E      + + F      I+  +    +  + R            W    
Sbjct: 102 HSELRHAQEPEV----VLSELFDALRGKIVVAHFRHIEREFLRQAT------LNLWDEAV 151

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L++   +        Q         S +L    L  G+   + H A  D  AT
Sbjct: 152 EFPIIDTLEIEHYVQNAQRSLWQRLLSRPLN-SVRLGQSRLRYGLPAYSPHHALTDAIAT 210

Query: 185 LALVWLIREKK 195
             L        
Sbjct: 211 AELFQAQYAHH 221


>gi|332669588|ref|YP_004452596.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC
           484]
 gi|332338626|gb|AEE45209.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC
           484]
          Length = 239

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 59/193 (30%), Gaps = 19/193 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A VR D          V              A  I G++ + 
Sbjct: 11  FDTETTGLDVDRDRIVTAALVRRDAAGT-----HVRTWLLDPGVEIPEAAASIHGVSTEH 65

Query: 68  ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A   GV        I      +      +   N  FD         R+   +       G
Sbjct: 66  AKAHGVAPKAALDEIATELAGAFRAGVPVVAYNAAFDLCLLDAELRRHRLPTLPD-RLLG 124

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
            +R  +  ++                 +     KL DL      +E  + H+A  DV AT
Sbjct: 125 AARPVIDPLVLDRAV----------DREREGKRKLVDLCGVYEVVESGDLHNADVDVVAT 174

Query: 185 LALVWLIREKKPK 197
           L ++  I  + P 
Sbjct: 175 LDVLERIVGRFPH 187


>gi|328473671|gb|EGF44506.1| hypothetical protein VP10329_13450 [Vibrio parahaemolyticus 10329]
          Length = 254

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 58/211 (27%), Gaps = 16/211 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G   +     +F  +        +                  EA  I GIT 
Sbjct: 57  IILDTETTGLG-SQAEIVEFTAICAHTGKVIVNEL------VKPTCSIPAEATAIHGITD 109

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +           FS       +     II YN+  FD         ++   +Y  S  + 
Sbjct: 110 EDVKDAPDFHLVFSNHFLPLLN--GRPIIIYNS-DFDTRLIIQSLDKHCNAAYVQSVHDL 166

Query: 126 NSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182
             ++ +    M     F      W    +      L +      ++  +  AH A AD  
Sbjct: 167 FFKFCVPQCAMLWYAEFFG---VWNEHHEDYKWQSLSNACAQQNVDVSDLTAHRALADCE 223

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            T  L+  +  +         D   K     
Sbjct: 224 MTRRLIHAVNSQIENQNNQNCDSVTKPSSED 254


>gi|306829204|ref|ZP_07462394.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           ATCC 6249]
 gi|304428290|gb|EFM31380.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           ATCC 6249]
          Length = 830

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 66/198 (33%), Gaps = 33/198 (16%)

Query: 1   MTN----HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M N     +V+ D E      +  +  Q   V +    E ++               D  
Sbjct: 1   MMNARNDRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIVDQYAT---DVNPHEPLDSH 55

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TG+T Q+        ++ + +I +        +   +N++FD        +     
Sbjct: 56  IKELTGLTDQRLAAAPE-FSQVAGKIFELVKDG---VFVAHNVQFDANLLAEFLFFEG-- 109

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                ++    R D +++ + +Y                  + L  L    GIE   AH 
Sbjct: 110 -----YELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEQAHT 151

Query: 177 AKADVYATLALVWLIREK 194
           A +D  AT  L+  +R+K
Sbjct: 152 ALSDAQATAELLLYMRQK 169


>gi|227550341|ref|ZP_03980390.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
           TX1330]
 gi|257886431|ref|ZP_05666084.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
 gi|227180543|gb|EEI61515.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
           TX1330]
 gi|257822287|gb|EEV49417.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
          Length = 297

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 29/199 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61
           + +V+ D+ET G         Q   ++ +   E+I+     +                IT
Sbjct: 124 DDYVVIDFETTGLSPLDSEILQIGAIKYESN-EEIDR---IYQNIKPFRSNISKRITKIT 179

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+  +  +     E +FS ++  F S      +  +N  FD  +  +    N  +  +  
Sbjct: 180 GLELEDVVNMPTFE-DFSPQLMSFIS---CYTLVAHNAPFDLKFLLHQLNENNIELNQR- 234

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L + R  +                 + KL  L     +++ N+HDA  D 
Sbjct: 235 ----IRVIDTLPLARRHF--------------ETPNHKLITLKDYLNLDN-NSHDALEDC 275

Query: 182 YATLALVWLIREKKPKLFE 200
             T  +   I+ +  K+ +
Sbjct: 276 LVTNKVYQYIKHENNKIVQ 294


>gi|288800983|ref|ZP_06406439.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331917|gb|EFC70399.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 208

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 20/200 (10%)

Query: 5   FVIYDYETFGRD-----VALD-----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++ +D ET G        + D     R  Q A +      +  +  +     P    +P 
Sbjct: 16  YLFFDTETTGIPNDYNAPSEDTNNWPRLVQIAWLITRENGDIYKELQSRIISPEGFRIPQ 75

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             ++ I GIT +KA+ DG    +            +  ++G+N   FD +       RN 
Sbjct: 76  -SSINIHGITQEKAVEDGEDLCDVLNDFVNDVDYNDVILVGHNIY-FDIHVVTAELIRND 133

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
               + + +  N    +             G ++P        +KL       G    NA
Sbjct: 134 MIDEKETLEKINKICTMKKSTDFCKISGLYGYKYPKLQQLY--YKL------FGENFDNA 185

Query: 175 HDAKADVYATLALVWLIREK 194
           HDA +D+ AT    + ++ +
Sbjct: 186 HDAGSDIEATRKCFFELKRR 205


>gi|255326994|ref|ZP_05368070.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296]
 gi|255296211|gb|EET75552.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296]
          Length = 228

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 48/176 (27%), Gaps = 20/176 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV   R    + + +D Q   +   E               A  + GIT + 
Sbjct: 8   FDLETTGVDVTTARIVTASLILLDPQGNVVRRGEWLA---DPGVEIPAGAAAVHGITTEY 64

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A   G    E    +         +   I   N  +D     +   R+   +        
Sbjct: 65  AREHGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIANGE------ 118

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                    +       P  +             L+ LA   G+   NAH +  D 
Sbjct: 119 ---------LPPGVVLDPYVLHKHVIPRKRGKRTLEVLATEYGVSLENAHTSADDA 165


>gi|91070260|gb|ABE11179.1| putative DNA polymerase III, epsilon subunit [uncultured
           Prochlorococcus marinus clone HF10-11H7]
          Length = 259

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 29/191 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              +I D ET G D   D   +   +  D  ++ + S   F     ++     EA ++ G
Sbjct: 36  EKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNN-----EAEYVNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +         +      +     +   I  +N+ FD  +                 
Sbjct: 91  IS-AEVTNISQPWEDGLHFFLKLVDSSD--FIVAHNVEFDKKWFGKGR------------ 135

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L  +   +  S + I W  +    T   + DLAL+  I   N H A +D +
Sbjct: 136 ---------LPKLNKKWICSLEDINWSFQKSLKTRPSVTDLALSFSIPVWNLHRALSDCF 186

Query: 183 ATLALVWLIRE 193
               +      
Sbjct: 187 YISEVFKKCDN 197


>gi|91788057|ref|YP_549009.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91697282|gb|ABE44111.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 234

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 52/200 (26%), Gaps = 33/200 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
           ++ D ET G      DR  +   V      E +        +      +     +A+ + 
Sbjct: 4   IVLDTETTGLSAENGDRIIEIGCV------ELVGRKLTGNNRHFYLNPERDSHEDALKVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +         A  +  + ++       I   +N  FD  +          D  R  
Sbjct: 58  GISNEFLKDKPK-FAAVADELLEYLQGAEIII---HNAPFDVSFLNKELELIGRDPIRH- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                       V +   +       +P          L  L     +++     H A  
Sbjct: 113 -----------CVAKVTDSLMMAKELFPG-----KRNSLDALCDRLDVDNSGRTLHGALL 156

Query: 180 DVYATLALVWLIREKKPKLF 199
           D      +   +   +  L 
Sbjct: 157 DAELLADVYINLTRGQNSLM 176


>gi|307708507|ref|ZP_07644972.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus mitis NCTC 12261]
 gi|307615423|gb|EFN94631.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus mitis NCTC 12261]
          Length = 816

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/420 (14%), Positives = 128/420 (30%), Gaps = 58/420 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    + ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGKIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P   +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPKLEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
           AT  L+  ++EK  +L + L       +L ++ D       + +  ++   R+ + L +P
Sbjct: 157 ATAELLLFLQEKMAQLPKGLL-----ERLLEMADALLYESYLLIEEIY---RNKSILSSP 208

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH--LNKC 300
                +     +    +G     + L     +K +   + E++       KEV   L   
Sbjct: 209 DLVEVQG----LYFKKTGAPLEPRKLS-QDFSKNISLLNLEVREEQESFAKEVGLLLKDE 263

Query: 301 PI-LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           P+ L+       + +        +      +L   T +                  +   
Sbjct: 264 PVSLIQAPTGIGKTYGYLLPALSQVENRQIVLSVPTKILQNQIMEEEGKRLKEVFHI--D 321

Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPF-----------SDRRLPELFFRYRARNF 408
           ++         ++            + L   F               L E+   YR ++F
Sbjct: 322 IHSLKGPHNYLKLDAFYRSLQENDENRLFRRFKMQLLIWLTETETGDLDEIGQLYRYQHF 381


>gi|320007769|gb|ADW02619.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           flavogriseus ATCC 33331]
          Length = 241

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 7/115 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            + +D ET G DV  DR    A VR++                        +A  I GI+
Sbjct: 8   LLAFDLETTGTDVETDRIVTAAVVRLEADGSVSAE---LTWLLDPGVAIPEQASAIHGIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            ++A   G+  A     I +  +      T ++  N  R+D         R   D
Sbjct: 65  TERAREHGLPAAAAIEEITRAVADGLRSGTPLVVMNA-RYDLSLLDRECRRYGVD 118


>gi|254228313|ref|ZP_04921740.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25]
 gi|262394378|ref|YP_003286232.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|151939119|gb|EDN57950.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25]
 gi|262337972|gb|ACY51767.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 248

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 54/194 (27%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
           FV  D+ET G +   D       V        I+  +           +   + E+V I 
Sbjct: 58  FVSVDFETTGLNAEEDAILTIGLVPF-----TIDRVQCSGSAHWVVNPNRELNEESVVIH 112

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +      +       I    S     ++  +    +  +  N    +  +     
Sbjct: 113 GITDSEVKNAPQLTH-ILGEILDALS---GKVVLVHYKNIERQFFNNALLNSIGEGIH-- 166

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D LD+  AI      G+    +     S +L        +     H A  D 
Sbjct: 167 ----FPVVDTLDIEHAIQRRECSGLFNKLKGKKPGSVRLGHARERYRLPAYQPHHALTDA 222

Query: 182 YATLALVWLIREKK 195
            AT  L     +  
Sbjct: 223 LATAELFQAQLQYH 236


>gi|152978551|ref|YP_001344180.1| DNA polymerase III subunit epsilon [Actinobacillus succinogenes
           130Z]
 gi|150840274|gb|ABR74245.1| DNA polymerase III, epsilon subunit [Actinobacillus succinogenes
           130Z]
          Length = 259

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 59/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V +    +        + KP  D   DPEA+ +
Sbjct: 11  IVLDTETTGMNQFGAHYEGHCIIEIGAVEL-INRKYTGRKLHLYVKP--DRPIDPEAIKV 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         +  ++    F       I   +N  FD  +    F ++  D    
Sbjct: 68  HGITDEMLADKP-DFSTVAQEFIDFIKDAELLI---HNAPFDVGFMDYEFRKHHIDIKT- 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +  +  D L + R  Y                    L  L     I++     H A 
Sbjct: 123 --ADICTVTDTLQMARRQYPG--------------KRNNLDALCDRLHIDNSKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLF 199
            D      +   +   +  LF
Sbjct: 167 LDAEILGDVYLAMTGGQVSLF 187


>gi|258620167|ref|ZP_05715206.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
           VM573]
 gi|262165546|ref|ZP_06033283.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
 gi|258587525|gb|EEW12235.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus
           VM573]
 gi|262025262|gb|EEY43930.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
          Length = 233

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 55/191 (28%), Gaps = 13/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D+ET G +   D       V  + Q   +   + +  +P      +  +V I GIT
Sbjct: 44  LVALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPT--KPLEEGSVVIHGIT 101

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +       E      + + F      I+  +    +  + R            W    
Sbjct: 102 HSELRHAQEPEV----VLSELFDALRGKIVVAHFRHIEREFLRQAT------LNLWDEAV 151

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L++   +        Q   R     S +L    L  G+   + H A  D  AT
Sbjct: 152 EFPIIDTLEIEHYVQNAQRSLWQRLLRRPLN-SVRLGQSRLRYGLPAYSPHHALTDAIAT 210

Query: 185 LALVWLIREKK 195
             L        
Sbjct: 211 AELFQAQYAHH 221


>gi|183601084|ref|ZP_02962577.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
 gi|188019425|gb|EDU57465.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
          Length = 253

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 66/229 (28%), Gaps = 31/229 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAFEV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +      V  A+ +    +F       I   +N  FD  +    F +   D    
Sbjct: 66  HGISDEFLQDKPV-FADIADEFIEFIRGAELII---HNAPFDIGFMDYEFSKLNKDIPPT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +     D L + R I+                    L  L     I++     H A 
Sbjct: 122 --ADFCQITDSLVMARQIFPG--------------KRNNLDALCDRYLIDNTKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
            D      +   +   +    F    D  N++ + ++  I      + V
Sbjct: 166 LDAEILADVYLAMTGGQTSLAFSMEADTSNESYVEEVQRIDRPVSGLRV 214


>gi|311033291|ref|ZP_07711381.1| Exonuclease [Bacillus sp. m3-13]
          Length = 216

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 28/211 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F ++D ET G +VA  DR  +   V++ +  + I++   +      +     E + +T I
Sbjct: 29  FTVFDTETTGFNVARDDRLIELGAVKI-KNLQVIDN-SAYQTYINPNRQIPREIIELTSI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++         E   ++    +  + C +G + + FD    +    RN          
Sbjct: 87  TQEQTDEAPQAL-EAITKLTNMANQTSVCYVG-HYLAFDMQAIQAELKRNNLKW------ 138

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D LD++  I                     L+  A   G      H A  D   
Sbjct: 139 KNPKSLDTLDLIGYIAPSYDMRD-------------LEKYARDFGTRIYQRHSALGDALT 185

Query: 184 TLALVWLIREKKPK----LFEYLYDYRNKNQ 210
           T  L   + +         +  L   +    
Sbjct: 186 TAYLFTELLQLSQDRGLKTWGDLLKIKGSQN 216


>gi|307328999|ref|ZP_07608167.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306885361|gb|EFN16379.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 240

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 56/192 (29%), Gaps = 16/192 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A V V R  E I   E               AV + GIT ++
Sbjct: 11  FDLETTGTDPRTSRIVTAAVVEV-RDGEPIGRREWLA---DPQVPIPDGAVAVHGITNER 66

Query: 68  ALRDGVV--EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G    E                  +   N  FD         R+           G
Sbjct: 67  AAAEGRSAREVVEEVAEVLVAHWRAGAPVVAYNAAFDLSLLAAELGRHGLRPLS-ERLEG 125

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                ++D      A                   L+ +    G+ H  AHDA AD  A +
Sbjct: 126 AETGPVVDPYTIDRAV---------DRYRKGKRTLEAVCGEYGVVHDRAHDAGADALAAV 176

Query: 186 ALVWLIREKKPK 197
            +   + E+  +
Sbjct: 177 RVACALAERHRE 188


>gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
 gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31]
          Length = 238

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 54/190 (28%), Gaps = 29/190 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D    DR  +   + V   +     +   +C P  D     EA  + G++
Sbjct: 5   IILDTETTGFDPKTGDRLVEIGCIEV-VDFMPTGRSFHEYCDPLRDM--PAEAQKVHGLS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E +    +F        +  +N  FD  +      +            
Sbjct: 62  IEFLTGKPKFH-EIADAFLEFV---GDSPVIAHNAAFDRSFVNFELEKCNRGP------- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                  L   R +   +    ++P          L  L     I     + H A  D +
Sbjct: 111 -------LPESRWVDTLAMAKKRFPGMY-----NSLDALCKRFKISLDSRDKHGALIDAH 158

Query: 183 ATLALVWLIR 192
               +   ++
Sbjct: 159 LLAEVYLELQ 168


>gi|242240256|ref|YP_002988437.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech703]
 gi|242132313|gb|ACS86615.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech703]
          Length = 244

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 54/199 (27%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G +         R  +   V V            +      D L DPEA  I
Sbjct: 9   VVLDTETTGMNRLGVHYEGHRIIEIGAVEV-INRRLTGRH--YHVYLKPDRLVDPEAFQI 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +  +      A+      +F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGISDEFLIDRPA-YADIVDEFIEFIRGAE---LVIHNASFDIGFMDYEFRMLNRDIPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLAMARRLFPG--------------KRNNLDVLCTRYQIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +   +   +  
Sbjct: 166 LDAEILAEVYLAMTGGQTS 184


>gi|157737501|ref|YP_001490184.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|157699355|gb|ABV67515.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
          Length = 247

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 24/201 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     DR  QF  + VD + +  E+ +     P        EA+ +  IT
Sbjct: 4   YVLFDTETTGA-AQEDRVIQFGAMIVDNKGKV-EAFDELCSAPIP---IKLEAMEVHNIT 58

Query: 65  PQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           P          E  F +R+ +  S  N   +  +NI FD    +   + N          
Sbjct: 59  PDLLENKPKAVETNFYKRLEELNSDEN--YLIAHNINFDLDMIKKEGFEN---------- 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDG--IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                + L+D +R       D    +          +K ++   +     + AHDA  DV
Sbjct: 107 ----SYKLIDTLRCAKHLFSDLPYHRLQYLRYALDLYKFEENEASKYGITIKAHDAIGDV 162

Query: 182 YATLALVWLIREKKPKLFEYL 202
                 +  +  K  +++  L
Sbjct: 163 LVMKLFLSKLVGKCREVYPSL 183


>gi|328956370|ref|YP_004373703.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2]
 gi|328456694|gb|AEB07888.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2]
          Length = 977

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 53/187 (28%), Gaps = 33/187 (17%)

Query: 6   VIYDYETFGRDVALDRPAQF-AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G     D   +  A V      E  E  E F            E V +TGI 
Sbjct: 50  VVLDTETTGLSRQDDELIEISAAVL--SGREVTERFETF---VRPSKPIPAEIVELTGIR 104

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         ++ +           +  +N  FD         R F ++     D 
Sbjct: 105 DADVRDAPP----ATQAVRDLARFVGGRPVIAHNAAFD---------RAFIEAVPGGSDA 151

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +   D L + R                    S +L  LA   G     +H A  DV A 
Sbjct: 152 SDIWIDSLALSRIA-------------LPRLASHRLSSLAETFGCA-DVSHRAGDDVRAL 197

Query: 185 LALVWLI 191
             +  ++
Sbjct: 198 CGVWRIL 204


>gi|283457705|ref|YP_003362291.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa DY-18]
 gi|283133706|dbj|BAI64471.1| DNA polymerase III, epsilon subunit [Rothia mucilaginosa DY-18]
          Length = 231

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 48/176 (27%), Gaps = 20/176 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV   R    + + +D Q   +   E               A  + GIT + 
Sbjct: 11  FDLETTGVDVTTARIVTASLILLDPQGNVVRRGEWLA---DPGVEIPAGAAAVHGITTEY 67

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A   G    E    +         +   I   N  +D     +   R+   +        
Sbjct: 68  AREHGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIANGE------ 121

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                    +       P  +             L+ LA   G+   NAH +  D 
Sbjct: 122 ---------LPPGVVLDPYVLHKHVIPRKRGKRTLEVLAAEYGVSLENAHTSADDA 168


>gi|165976701|ref|YP_001652294.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876802|gb|ABY69850.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 257

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 58/216 (26%), Gaps = 30/216 (13%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G   +          +   V V            F          + EA+ +
Sbjct: 10  VVLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +      V  AE +    +F       I   +N  FD  +    F        + 
Sbjct: 67  HGITNEFLQDRPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 S  D L V R +Y                    L  L    GI++     H A 
Sbjct: 123 --AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
            D      +  ++   +  L        N   +  L
Sbjct: 167 LDAEILADVFLMMTGGQLALLGEEDASANHENIADL 202


>gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI]
 gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 937

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 31/176 (17%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    V+ D ET G D   DR  +   VR+ +  + ++                 +   +
Sbjct: 1   MIKEIVVCDLETTGLDPLSDRIIEIGLVRL-KDLKIVDIYHT---MVNPGRPLPLKIKNL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TG+              FS    +         I  +NIRFD  +       +F      
Sbjct: 57  TGLDDSDLASAPA----FSGVREKVLGFIGDAPIAGHNIRFDMGFLAAAGGISF------ 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                N  +D +++ R                 G  +++L+ L     +E    H 
Sbjct: 107 ----KNPAYDTVELARLA-------------VPGLPTYRLESLCERLNVEAAARHR 145


>gi|322515310|ref|ZP_08068307.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118686|gb|EFX90898.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 257

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 58/216 (26%), Gaps = 30/216 (13%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G   +          +   V V            F          + EA+ +
Sbjct: 10  VVLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +      V  AE +    +F       I   +N  FD  +    F        + 
Sbjct: 67  HGITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 S  D L V R +Y                    L  L    GI++     H A 
Sbjct: 123 --AEICSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
            D      +  ++   +  L        N   +  L
Sbjct: 167 LDAEILADVFLIMTGGQLALLGEEDASTNHENITDL 202


>gi|261251373|ref|ZP_05943947.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260938246|gb|EEX94234.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 239

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 12/193 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D+ET G D   D       V  +     I   + +  +P        E+V I GIT
Sbjct: 49  FLAMDFETTGLDSDNDDIITIGTVPFNLNRIFINQAQHWTVRPRKQL--AEESVVIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               L       + S    Q     +  I+  +  R +  +          +   +   +
Sbjct: 107 HSDVLDAP----DLSGIYEQVLEQMSGKIMVVHYQRIEREFFDKALMARIKEGIEFPVVD 162

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L   ++   F+    + P+      S +L       G+     H A  D  AT
Sbjct: 163 TMHIETQLQQKQSGGLFNKILGKKPA------SVRLGASRSRYGLPQYTPHHALTDAVAT 216

Query: 185 LALVWLIREKKPK 197
             L+        +
Sbjct: 217 AELLQAQLAHHYE 229


>gi|302878569|ref|YP_003847133.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
 gi|302581358|gb|ADL55369.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
          Length = 233

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 30/195 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  + A + +    +  +    F      +   D +A  + G T
Sbjct: 4   IVLDTETTGLDPKKGHRIIEIAAIAL-EGRKVSKRH--FHHYLDPEREVDEDAARVHGFT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+F+     F    +   +  +N  FD  +  N                
Sbjct: 61  WDMLKGR----AKFADIATSFLEFVDGAELMAHNAPFDMSFINNELRLLGLPPLEN---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L + R ++    +G              L  L     I+  H   H A  D  
Sbjct: 113 --PVVDTLKMAREMHPGKKNG--------------LDALCSRYEIDNTHRTLHGALLDTE 156

Query: 183 ATLALVWLIREKKPK 197
               + + +   +  
Sbjct: 157 LLAEVYFAMTRGQES 171


>gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 244

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V      E+  S   F      D   +P A  +TG+T
Sbjct: 4   IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F+  + +F +  +   +  +N  FD  +  N    +           
Sbjct: 61  LEFLADKPL----FADVVEEFLAYIDGAELIIHNAAFDLGFLDNEL--SLLGDNYGRIVE 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L + R  Y    +               L  L    G++  H   H A  D  
Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILADVYIALTSGQEEI 176


>gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114]
          Length = 243

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 66/232 (28%), Gaps = 39/232 (16%)

Query: 2   TNHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYL 52
           +N  ++ D ET G +          R  +   V      E I        F      D L
Sbjct: 8   SNRIIVLDTETTGMNFSGGPVYEGHRIVEIGAV------EIINRKLTGNHFHVYIKPDRL 61

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            D EA+ + GIT +             + IH +F        +  +N  FD  +    F 
Sbjct: 62  IDLEAIDVHGITDEFLYDKPE-----YKDIHDEFLEFIKGAELVAHNAPFDVGFMDYEF- 115

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE- 170
                          S+ + L      Y    D +    +        L  L    GI+ 
Sbjct: 116 ---------------SKLNKLIGTTDQYCKITDTLAMAKKIFPGKRNNLDVLCERYGIDN 160

Query: 171 -HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            H   H A  D      +  L+   +  L     +  + +    +  + +  
Sbjct: 161 SHRTLHGALLDAEILADVYLLMTGGQTSLSFSSGENSSDSDEETIKRLNSGR 212


>gi|326522268|dbj|BAK07596.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 323

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 67/223 (30%), Gaps = 28/223 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G     DR  +FA VR D           F      +   + +   + GI
Sbjct: 122 TILVFDIETTGFSRRGDRIIEFA-VR-DLTG---GKNSTFQTLINPER--EVKNAAVHGI 174

Query: 64  TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           +        +    EF   + Q+      +      + +N   FD  +    F R   + 
Sbjct: 175 STNMVCSSDIPRFGEFIPILLQYVWSRQVAGKPVMWVAHNGKTFDVPFLIFEFQRCKQEM 234

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176
                       D L + + +           S     +S  +++L     I     AH 
Sbjct: 235 -----PGDWLFVDTLPIAKQL---------VDSNGKKISSASMKNLVEHYKIPVDGKAHR 280

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           A  DV A   ++  +  +       L +   +    +    + 
Sbjct: 281 AMRDVTALCYVLQKLTFELKLTVPQLLEKSFRVSDIQTTPPKK 323


>gi|27375751|ref|NP_767280.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27348889|dbj|BAC45905.1| DNA polymerase III epsilon chain [Bradyrhizobium japonicum USDA
           110]
          Length = 239

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V     + ++ + + +      +     EA  + G++
Sbjct: 4   IVLDTETTGLDPLRGDRLVEIGCV---EMFNRMPTGQTYHVYINPERDMPAEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V   E +    +F        +  +N  FD  +      R    +       
Sbjct: 61  AEFLSTKPVFH-EVADAFLEFI---GDAPLVIHNASFDISFINAELDRIKRAAIPREQL- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 116 ----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|149276274|ref|ZP_01882418.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39]
 gi|149232794|gb|EDM38169.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39]
          Length = 334

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 7/113 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D ET G +V  DR  + A ++      ++  T     +   +      +  I GI 
Sbjct: 9   LAFFDLETTGVNVGSDRIVEIAILKAMPDGTELIKTL----RINPEMPIPLASSLIHGIY 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            +    +       +  + +F    +  + GYN+ RFD       F R   D 
Sbjct: 65  DEHIAAEP-TFKAVAAEVAEFIGDAD--LAGYNSNRFDIPVLLEEFLRAGVDF 114


>gi|308234672|ref|ZP_07665409.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis ATCC
           14018]
 gi|311114561|ref|YP_003985782.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Gardnerella vaginalis ATCC 14019]
 gi|310946055|gb|ADP38759.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Gardnerella vaginalis ATCC 14019]
          Length = 359

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 27/193 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-------CKPADDYLPD 54
           + +FV+ D ET G +  +D+  +   V+     + IE  +               +    
Sbjct: 175 SKNFVVIDCETTGLNSKVDKIIEIGAVKF-IDGK-IEEFQKLININCDSVSNFNKNNFIP 232

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            E + +TGIT       GV      R    F       ++GYN      +++  +F    
Sbjct: 233 NEIIELTGITSNMLESYGVGLDLALREFIDFVGKLP--LLGYNVSFDIGFFNSALFS--- 287

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            D    S  + N   D+   ++    F               +++L+ +     I     
Sbjct: 288 LDEKLSSAFSVNKVIDISRFVKHDRRFL-------------KNYQLKTVLHEYNISESVP 334

Query: 175 HDAKADVYATLAL 187
           H A  D   T  L
Sbjct: 335 HRALLDARLTARL 347


>gi|162447750|ref|YP_001620882.1| DNA polymerase III subunit epsilon [Acholeplasma laidlawii PG-8A]
 gi|161985857|gb|ABX81506.1| DNA polymerase III, epsilon subunit [Acholeplasma laidlawii PG-8A]
          Length = 227

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 23/224 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              +++D+ET G     D+  +   V +++  +  E  +                  +TG
Sbjct: 6   KKILVFDFETTGLTPKRDKVIEVGAVLLEKIGDTYEIVQEIDYLIKQQTPITDFISNLTG 65

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +   RDGV E    R++       +T ++ YN      + S       +      ++
Sbjct: 66  ITNEMLARDGVEEEYAFRQLDNLIDE-DTLLVAYNLAFDIGFLSA-----LYQTYVAHNY 119

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D + V +  Y +                 KL++      + +  AH A  D  
Sbjct: 120 KIQNDILDCMAVYKDRYPYP---------------HKLENAVARFELSNNQAHRASEDAK 164

Query: 183 ATLALVWLI--REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
           AT  ++  +   E   KL+  +  Y  K  L      +    LV
Sbjct: 165 ATFKVLDCLASEENNLKLYVNVLGYNKKYGLPDRTYFKKHIELV 208


>gi|91223850|ref|ZP_01259114.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|91191342|gb|EAS77607.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
          Length = 248

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 56/194 (28%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
           FV  D+ET G +   D       V        I+  +           +   + E+V I 
Sbjct: 58  FVSVDFETTGLNSEEDVILTIGLVPF-----TIDRVQCNGSAHWVVNPNRELNHESVIIH 112

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +        ++    I    S     ++  +    +  +  N    +  +  +  
Sbjct: 113 GITDSEVKNAPQ-LSQILGEILDALS---GKVVLVHYKNIERQFFNNALLNSIGEGIQ-- 166

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D LD+  AI      G     +     S +L       G+     H A  D 
Sbjct: 167 ----FPVVDTLDIEYAIQRRECRGFINKLKGKKPGSVRLGHARERYGLPAYQPHHALTDA 222

Query: 182 YATLALVWLIREKK 195
            AT  L     +  
Sbjct: 223 LATAELFQAQLQYH 236


>gi|261248373|emb|CBG26210.1| exonuclease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
          Length = 189

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 20/188 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D ET G         +   +  D          +             E + I GIT
Sbjct: 15  FLFIDTETTGLGAD-AEIVEICII--DSHGSI-----MLNTLIKPTKSIPDEEIAIHGIT 66

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          +  R + + F       + YN   +D    +  +  +   S    +  
Sbjct: 67  NEMVAFAPA-WTDICRTLEELFMRFG--FVIYNA-DYDIRLIKQTYALHGQSSVAAPYML 122

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYA 183
             +    +           +    P +  G    KL D A   G++    AH A AD   
Sbjct: 123 AYNSVCAMM-------LYAEYRDEPGKYKGYKWHKLVDAAEREGVKLEGQAHRALADCKM 175

Query: 184 TLALVWLI 191
           TL LV  +
Sbjct: 176 TLGLVRAL 183


>gi|332291593|ref|YP_004430202.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169679|gb|AEE18934.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 232

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 61/213 (28%), Gaps = 28/213 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  FV++D ET G     DR      V V      I  +   + K     +  PE+  I 
Sbjct: 44  TTRFVVFDTETTGLHYKEDRILSIGAVTVINNEISIAQSLELYLKQD---IYKPESAKIH 100

Query: 62  GI----TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           GI    + ++              I +      T I+  ++I FD     +   R     
Sbjct: 101 GILRNGSYEQVNEQ--------EAIEKCLEFIGTDILIGHHIGFDVAVINSALKRAQL-- 150

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                        L + +          +   +R      + L +LA A  I   + H +
Sbjct: 151 -----------GKLKNRVLDTETLYKRLVHPINRPLQEKRYTLDELAEALKIPLHDRHTS 199

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
             D   T      I ++             +  
Sbjct: 200 AGDALITAIAFIKIVKRLNSDGSLTVKQLFRKN 232


>gi|329946199|ref|ZP_08293812.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527797|gb|EGF54788.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 276

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 44/172 (25%), Gaps = 25/172 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     D   + A V  D       S              D     I G+ 
Sbjct: 56  YAVVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTL---IDPGAGVDVGPTRIHGLV 112

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++         + +  +    +     ++ +N      + ++ +  R   D        
Sbjct: 113 AEELSGAPG-LDDVADLLVADLA--GRAVVAHNARFDVGFLTQALGARGLLD-------- 161

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                      R         ++W        S +L       G+E    H+
Sbjct: 162 -----------RGARVPRVCTMEWARHFMTTPSRRLTTCCEVAGVEIGRHHN 202


>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
          Length = 1404

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 22/194 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V++D E+ G + A D   + A       ++ +     F           P++  I 
Sbjct: 760 KYRLVVFDIESTGLNTATDAIIEVAA------FDPV-EGTSFSSLVNPQRPIPPQSTAIH 812

Query: 62  GITPQKALRDGVVEAEFSRRIHQFF--------SVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            IT           +E ++   ++             T +IG+N    D+   R  F   
Sbjct: 813 HITDSMVQGAPR-LSEVTQAFARYLRLSEGQRDEDEVTILIGHNVFALDEPLLRRAFRSE 871

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG--ATSFKLQDLALANGIE- 170
             D              +L  ++     S    ++          S +L  L     +E 
Sbjct: 872 SVD---TENLLFCDSLTILKGLKQELQGSKKDSKFDRGVLDILTNSLRLSSLVEGLRVEA 928

Query: 171 HVNAHDAKADVYAT 184
               H A  D    
Sbjct: 929 DGELHRADTDAKML 942


>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei
           TREU927]
 gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           brucei]
 gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
           gambiense DAL972]
          Length = 1404

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 22/194 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V++D E+ G + A D   + A       ++ +     F           P++  I 
Sbjct: 760 KYRLVVFDIESTGLNTATDAIIEVAA------FDPV-EGTSFSSLVNPQRPIPPQSTAIH 812

Query: 62  GITPQKALRDGVVEAEFSRRIHQFF--------SVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            IT           +E ++   ++             T +IG+N    D+   R  F   
Sbjct: 813 HITDSMVQGAPR-LSEVTQAFARYLRLSEGQRDEDEVTILIGHNVFALDEPLLRRAFRSE 871

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG--ATSFKLQDLALANGIE- 170
             D              +L  ++     S    ++          S +L  L     +E 
Sbjct: 872 SVD---TENLLFCDSLTILKGLKQELQGSKKDSKFDRGVLDILTNSLRLSSLVEGLRVEA 928

Query: 171 HVNAHDAKADVYAT 184
               H A  D    
Sbjct: 929 DGELHRADTDAKML 942


>gi|261750330|ref|ZP_05994039.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
 gi|261740083|gb|EEY28009.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
          Length = 233

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 22  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 77

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 78  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 131

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                  +  +D  R ++                 S KL       G     + H A  D
Sbjct: 132 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 174

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    +     
Sbjct: 175 AYLTAGLYLHQQGVAKP 191


>gi|224824456|ref|ZP_03697563.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224602949|gb|EEG09125.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 242

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 57/195 (29%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G + +   R  +FAG+ +    +    +   +  P  D   DP+A  + GI+
Sbjct: 4   IILDTETTGLEPSQGHRIIEFAGLEM-VNRKLTGRSLHLYIHPERD--IDPDAERVHGIS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A     I  F       I   +N  FD  +    F R   +        
Sbjct: 61  LDFLADKPR-FAAVGPEIADFLRDAELII---HNAPFDVGFLNAEFDRIGIE---RVSTL 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             S  D L + R  +                    L  L     I+  N   H A  D  
Sbjct: 114 CASVIDTLVMARDQFPG--------------KRNSLDALCDRFEIDRSNRTLHGALIDCE 159

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 160 LLGEVYLWMTRGQNS 174


>gi|254502882|ref|ZP_05115033.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
 gi|222438953|gb|EEE45632.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
          Length = 239

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 29/193 (15%)

Query: 8   YDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           +D ET G +    DR  +  GV        + +   +             A  + G++ +
Sbjct: 6   FDTETTGLNPRGGDRLVEIGGV---ELINHVPTGNAYHVYINPQRDMPEGAFKVHGLSEE 62

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 + E + +    +F        +  +N  FD  +      R    +   +     
Sbjct: 63  FLSDKPLFE-QVADEFLEFVGDG---TLVIHNAAFDMGFINMELERCGRRTISNTQ---- 114

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYAT 184
              D L++ R  +   P+               L  L    GI++     H A  D    
Sbjct: 115 -VIDTLEIARRKHPSGPN--------------SLDALCSRYGIDNSKRVKHGALLDAEIL 159

Query: 185 LALVWLIREKKPK 197
             +   +   K +
Sbjct: 160 AEVYLEMIGGKQR 172


>gi|295102295|emb|CBK99840.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Faecalibacterium prausnitzii L2-6]
          Length = 337

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 54/208 (25%), Gaps = 34/208 (16%)

Query: 1   MTNHFVIYDYETF-GRDVA-----------LDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
           M  + V++D E   G                    +   V++D     +++  +   +P 
Sbjct: 1   MPRNLVLFDLEWNIGYQPFIFNYHGVQQTFRGEIIEIGAVKIDEDANVLDTFSIHL-RPR 59

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                      +TG+T +     G       + + +F                D    + 
Sbjct: 60  IFRCLQHHIAKVTGLTQEDL-DKGEP---IIQGLRRFMKWCGPDAEFAEWGMDDVPVLKQ 115

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
             +    D    +                ++                   KL+++    G
Sbjct: 116 NLFLCNLDESCPT----------------VWYDLQQLFLREYPRKEGEGMKLENVVTRMG 159

Query: 169 IEHVNA-HDAKADVYATLALVWLIREKK 195
           I      HDA +D   T  L  ++  + 
Sbjct: 160 IPLERPFHDALSDTLYTADLCRMLDLRA 187


>gi|331661586|ref|ZP_08362509.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143]
 gi|284919985|emb|CBG33040.1| DNA polymerase III epsilon subunit [Escherichia coli 042]
 gi|331060008|gb|EGI31972.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143]
          Length = 246

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      + L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPERLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      AE +     +        +  +N  FD  +     +         
Sbjct: 69  HGIADEFLLDKP-TFAEVADEFMNYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 124 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 168

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 169 LDAQILAEVYLAMTGGQTSM 188


>gi|145641463|ref|ZP_01797041.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|145273754|gb|EDK13622.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21]
          Length = 205

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 59/214 (27%), Gaps = 31/214 (14%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G              +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          E ++    + +     I   +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKPE-FKEVAQDFLDYINGAELLI---HNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
            D      +  ++   K            K  + 
Sbjct: 164 LDAEILADVYLMMTGGKQIYSMKKNLLSLKLSVL 197


>gi|150398789|ref|YP_001322556.1| exonuclease RNase T and DNA polymerase III [Methanococcus vannielii
           SB]
 gi|150011492|gb|ABR53944.1| Exonuclease RNase T and DNA polymerase III [Methanococcus vannielii
           SB]
          Length = 189

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 57/189 (30%), Gaps = 12/189 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G      + AQ + +  D +    ++   ++            A  I G+T
Sbjct: 2   YVFLDTETTGLHP--GQIAQLSYLVTDEELNIKKAFNQYYSV----EHMSRSAARIHGLT 55

Query: 65  PQKALR--DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
                    G+V  +  + +    S     +I  +NI FD  + +    R   +      
Sbjct: 56  QDILEELSSGLVFEDTIKEV---LSDLKYSVIIGHNISFDIRFLKAEIERLGEEYVPKEK 112

Query: 123 DNGNSRWDLLDVMRAIYAF-SPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 +  +  +  +  +  P  I+            L+      G   V  HDA+ D 
Sbjct: 113 FCTMCHFTKICKIPGVRQYKRPKLIELMDYLKQCPKEGLKFTKNTYGCSDVGFHDARFDT 172

Query: 182 YATLALVWL 190
                    
Sbjct: 173 GVMYLCYKK 181


>gi|114332140|ref|YP_748362.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
 gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
          Length = 234

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 48/196 (24%), Gaps = 27/196 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +V  D ET G D AL  R  + A V V            F          D  A+ + G+
Sbjct: 3   YVFLDTETTGLDPALGHRIVEIAAVEV-CNRRSTGRH--FHRYLNPGRESDEGALRVHGL 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +          E      +F       I   +N  FD  +                  
Sbjct: 60  SREFLQDKPA-FQEICSEFLEFIEDAEILI---HNAPFDVGFINRELG------------ 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
                   L+ M        D +             L  L     I+  H   H A  D 
Sbjct: 104 -----LIRLEPMHNYCLQIVDTLMLAKELHPGKRNNLDALCERYQIDNAHRTLHGALLDA 158

Query: 182 YATLALVWLIREKKPK 197
                +   +   +  
Sbjct: 159 ELLAEVYLAMTRGQES 174


>gi|224535480|ref|ZP_03676019.1| hypothetical protein BACCELL_00343 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522946|gb|EEF92051.1| hypothetical protein BACCELL_00343 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 243

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 73/246 (29%), Gaps = 29/246 (11%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70
           ET G  + +DR  +   ++V     +   T     +   +      A  + GI  +    
Sbjct: 2   ETTGTSINVDRIVEICYLKVHPNGNEEAKTL----RINPEMHIPEGASAVHGIYDKDVAD 57

Query: 71  DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130
                 E +R I          + G+N+ RFD       F R   D              
Sbjct: 58  CP-TFKEVARTIANDIE--GCDLAGFNSNRFDIPVLAEEFLRAGVD-------------- 100

Query: 131 LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL-VW 189
            +D+ R  +           +   + ++K        G    +AH A AD  AT  + + 
Sbjct: 101 -IDLSRRKFVDVQVIFHKLEQRTLSAAYKF-----YCGKNLEDAHTAAADTQATYEVLMA 154

Query: 190 LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-WHPR 248
            +        +  +     +  + +     M    +   +F   +     +  V    P 
Sbjct: 155 QLDRYSELQNDIAFLADYSSFNKNVDFAGRMIYDDNGVEVFNFGKYKGMSVTDVLKRDPG 214

Query: 249 YKDSVI 254
           Y   ++
Sbjct: 215 YYSWIL 220


>gi|262394233|ref|YP_003286087.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25]
 gi|262337827|gb|ACY51622.1| DNA polymerase III alpha subunit (gram-positive type) [Vibrio sp.
           Ex25]
          Length = 205

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 14/193 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T + +I D ET G         +F  +  +     ++                 +A  I 
Sbjct: 6   TENAIIIDTETTGLGADA-EIVEFTAICANSGEVIVDEL------VKPTCSIPADATAIH 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +           FS R     +     II YN+  FD         ++   +Y  S
Sbjct: 59  GITNEDVKDAPDFHLMFSNRFLPLLN--GRPIIIYNS-DFDTRLIIQSLDKHCNAAYVQS 115

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKA 179
             +   ++ +       YA       W    +      L +      ++  +  AH A A
Sbjct: 116 VHDLFFKFCVPQCAMLWYAEFYGV--WNEYHEDYKWQSLTNACAQQHVDVSDLIAHRALA 173

Query: 180 DVYATLALVWLIR 192
           D   T  L+  + 
Sbjct: 174 DCEMTRRLIHAVN 186


>gi|257483794|ref|ZP_05637835.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 178

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 55/192 (28%), Gaps = 31/192 (16%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G  V    R  +   V      E I        F      D   D  A+ + 
Sbjct: 11  IVLDTETTGMPVTDGHRIIEIGCV------ELIGRRLTGRHFHVYLQPDRESDEGAIGVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +  +      AE +    +F       I   +N  FD  +  N  +       R  
Sbjct: 65  GITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINNE-FALMGSQDRAD 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                S  D L + R  +    +               L  L    G+++     H A  
Sbjct: 120 ITQHCSILDTLMMARERHPGQRN--------------SLDALCKRYGVDNSGRELHGALL 165

Query: 180 DVYATLALVWLI 191
           D      +   +
Sbjct: 166 DSEILADVYLAM 177


>gi|163794470|ref|ZP_02188441.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199]
 gi|159180194|gb|EDP64717.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199]
          Length = 458

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 44/177 (24%), Gaps = 27/177 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK-PADDYLPDPEAVFITGIT 64
           +  D ET G D +     QF  + + +    +   +    +           ++ I GIT
Sbjct: 15  IAIDIETTGLDASRAHAVQFGAIPIAKG---VLKPDDACEQMLNPGIPIPSSSIAIHGIT 71

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         S             ++  ++I FD         R   D        
Sbjct: 72  DAMVRNAPT----LSDVWPNLVGQWKNRVVIGHSIGFDLTVLAAEAKRKKLDW------- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                      +   A     +          S  L  LA    +E  N H A  D 
Sbjct: 121 -----------QKPRALCVRMLAT-IAAPTLASHSLDALATWLNLETRNRHRALGDA 165


>gi|327183531|gb|AEA31978.1| hypothetical protein LAB52_05120 [Lactobacillus amylovorus GRL
           1118]
          Length = 298

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 26/193 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N F+  D ET G + +  +      ++     +     E F+     +     +   +T
Sbjct: 127 KNDFIAVDLETTGLNTSRSKIISIGAIK--ENLK--GEEEQFYRLIKINEAIPEKITELT 182

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +     GV   +      +F    +  I+GYN + FD+ +    +      +   S
Sbjct: 183 GLTSKVLNERGVTLEQALNEFRKFV--GSEMIVGYN-LSFDNNFLLKAYLSIGQRALVNS 239

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   DL+ +++    F  +             + L+ +    GI++ N H+A +D 
Sbjct: 240 MK------DLMGIVKEKDIFLDN-------------YDLETVLKEYGIKNDNRHNALSDA 280

Query: 182 YATLALVWLIREK 194
            AT  L   + +K
Sbjct: 281 RATFKLAKELNKK 293


>gi|51244817|ref|YP_064701.1| DNA polymerase III subunit epsilon [Desulfotalea psychrophila
           LSv54]
 gi|50875854|emb|CAG35694.1| probable DNA polymerase III, epsilon chain [Desulfotalea
           psychrophila LSv54]
          Length = 239

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 30/203 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAV 58
           FV  D+ET G D+  D       +  D        T   +CK A  ++ +P      ++V
Sbjct: 49  FVALDFETTGLDLQKDGILSIGLIPFD--------THRIYCKKAAYWVINPHSPLGEDSV 100

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GIT            +  + +    +     ++ +               R F D  
Sbjct: 101 IIHGITHSDINNAPG-LGKVWQEVLNELA--GKIVVVH----------YREIERKFLDKA 147

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGAT-SFKLQDLALANGIEHVNAH 175
                     + ++D M+             W         S +L +     G+ H   H
Sbjct: 148 LHELLGEGIAFPVIDTMQIESIIQQKKRGGLWNWLKGRHPESIRLANSRSRYGLPHYQVH 207

Query: 176 DAKADVYATLALVWLIREKKPKL 198
            A  D  AT  L+          
Sbjct: 208 HALTDAIATAELLQAQIAHHYSD 230


>gi|284009180|emb|CBA76234.1| DNA polymerase III subunit epsilon [Arsenophonus nasoniae]
          Length = 254

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 52/199 (26%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V V            F        L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGIHYEGHNIIEIGAVEV-INRRLTGRH--FHVYIKPARLVDPEAFEV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +     F        +  +N  FD  +    F +   D    
Sbjct: 66  HGISDEFLQDKP-TFAQIADEFLDFIRGAE---LVIHNAPFDIGFMDYEFSKLNRDIPPT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              N     D L + R ++                    L  L     I++     H A 
Sbjct: 122 --ANFCQITDSLVLARKLFPG--------------KRNNLDALCDRYHIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +   +   +  
Sbjct: 166 LDAEILAEVYMAMTGGQTS 184


>gi|154487175|ref|ZP_02028582.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
           L2-32]
 gi|154085038|gb|EDN84083.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
           L2-32]
          Length = 261

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 55/192 (28%), Gaps = 29/192 (15%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           + +V  D ET G     D R  +   VR+    +       +            +   IT
Sbjct: 97  DDYVAVDIETTGL--GRDARIIELGAVRIRHGRKV----ASYSQLVNPQIPIPAKVTQIT 150

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +       ++ +   + + F        IG+N  RFD         R         
Sbjct: 151 GITDRNVKGKPTID-KALPKFYAFCGRD--TWIGHNIRRFDIPVIAREAQRVG------- 200

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
              G       D M    A  P               ++ DL    GI     H A  D 
Sbjct: 201 --AGMPDVSFYDTMELSQALLPQLDH----------HRVVDLIRYFGIAKTERHRAADDA 248

Query: 182 YATLALVWLIRE 193
             T  +   +++
Sbjct: 249 AQTAQIFEHLKQ 260


>gi|154504776|ref|ZP_02041514.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149]
 gi|153794950|gb|EDN77370.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149]
          Length = 300

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 70/189 (37%), Gaps = 27/189 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++YD ET G +   D P       +D Q + I      + +P +     P+A  I GITP
Sbjct: 135 IVYDLETTGVNPWKDEPLSMCI--MDLQGKVIFEH---YFRP-EHTKSWPDAAAIHGITP 188

Query: 66  QKALRD-GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           +K   +  +       +I + F   +  +I YN I FDD +      +            
Sbjct: 189 EKVANESPMSFYR--DQIQKIF-DASDILITYNGINFDDSFLEAAGIKL----------- 234

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   DVMR       D   W     G   ++L D A   G E   AHDA  DV AT
Sbjct: 235 --PEVMQFDVMREYAWLIHD---WDEYHQGWRWWRLIDCAAYYGYEFS-AHDAAEDVKAT 288

Query: 185 LALVWLIRE 193
           L     +  
Sbjct: 289 LYCYKKMVF 297


>gi|260431958|ref|ZP_05785929.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415786|gb|EEX09045.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 240

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 54/209 (25%), Gaps = 40/209 (19%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   +     W  + + E +      +     EA  + GI 
Sbjct: 4   IVLDTETTGFDPESGDRIVEIGAI---ELWNHVATGETYHVYINPERSMPAEAFGVHGIG 60

Query: 65  PQKAL--RDGVV----------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           P      +               A+  +    F        +  +N  FD  +       
Sbjct: 61  PDLLEPPQKPEPGQITLKDKPVFAQIGQAFRDFV---GDARLVIHNAAFDMKFLNAELGW 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                            D L + R  +  SP                L  L     I++ 
Sbjct: 118 MGLPPIPMEQA-----LDTLAIARKRFPGSPA--------------SLDALCRRFNIDNS 158

Query: 173 NA--HDAKADVYATLALVWLIREKKPKLF 199
           N   H A  D      +   +   +   F
Sbjct: 159 NRVLHGALLDSEILAEVYLELIGGRQPDF 187


>gi|257900260|ref|ZP_05679913.1| DNA polymerase subunit III [Enterococcus faecium Com15]
 gi|257838172|gb|EEV63246.1| DNA polymerase subunit III [Enterococcus faecium Com15]
          Length = 295

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 29/199 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61
           + +V+ D+ET G         Q   ++ +   E+I+     +                IT
Sbjct: 122 DDYVVIDFETTGLSPLDSEILQIGAIKYESN-EEIDR---IYQNIKPFRSNISKRITKIT 177

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+  +  +     E +FS ++  F S      +  +N  FD  +  +    N  +  +  
Sbjct: 178 GLELEDVVNMPTFE-DFSPQLMSFIS---CYTLVAHNAPFDLKFLLHQLNENNIELNQR- 232

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L + R  +                 + KL  L     +++ N+HDA  D 
Sbjct: 233 ----IRVIDTLPLARRHF--------------ETPNHKLITLKDYLNLDN-NSHDALEDC 273

Query: 182 YATLALVWLIREKKPKLFE 200
             T  +   I+ +  K+ +
Sbjct: 274 LVTNKVYQYIKHENNKIVQ 292


>gi|269961702|ref|ZP_06176063.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833567|gb|EEZ87665.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 239

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 53/197 (26%), Gaps = 18/197 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +   +       V       +I   +    K       D E+V I GIT
Sbjct: 49  FVALDFETTGLNPQKNGIITIGLVPF--NLNRIFLRQAKHWKVRPQEKLDEESVIIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + +       +    +          I+  +  R +  +               +   
Sbjct: 107 HSELIDAP----DLGEILGPLLESLAGKIVVVHYRRIEREFLAQA---------LRTRIG 153

Query: 125 GNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
               + +LD ++          G  W         S +L       G+     H A  D 
Sbjct: 154 EGIEFPVLDTLQIEEDIQQRTSGGLWNKLKGNKPKSLRLAQSRRRYGLPDYTPHHALTDA 213

Query: 182 YATLALVWLIREKKPKL 198
            AT  L+          
Sbjct: 214 IATAELLQAQIAHHYSE 230


>gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 619

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 52/186 (27%), Gaps = 28/186 (15%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV +D ET G      DR  Q   VR+ +          F            +++   G
Sbjct: 429 TFVAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGE--SFERLIDPGIPIPAQSMAYHG 486

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+              +  + QF +      +  +N+ FD  +                 
Sbjct: 487 ISNDMVKGKPP----LAVVLPQFAAFAGASALAGHNVAFDLKFLHAAQGETGI------- 535

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R  +LD M       P                L+ +A   G+  +    A +D  
Sbjct: 536 ---ALRQPVLDTMILAALLDPGY-----------DLSLEAVAGRLGVPPLPHRSALSDAL 581

Query: 183 ATLALV 188
            T  ++
Sbjct: 582 VTAEIL 587


>gi|153006866|ref|YP_001381191.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030439|gb|ABS28207.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 238

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 57/187 (30%), Gaps = 21/187 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFIT 61
            F + D E  G D A D       VR+ R    +  E     F KP +   P  E + I 
Sbjct: 46  TFTVLDCEMTGLDPARDEILSIGAVRI-RNGRIVMAERFYQVF-KPTEAVSP-KEVILIH 102

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+ P +  R G+   +   R+  F       ++  +    D  +             R  
Sbjct: 103 GLGPDEVSR-GLPLGDALERLLAFI---GDSVVIGHFTSVDLSFLNAALAS------RKE 152

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N   D   +            +       A    L+D+ +  G+    AH A  D 
Sbjct: 153 RSLKNPALDTRLLYAW------WRRRTSPAGQAAADANLEDIVIEMGLPRYPAHHAFYDA 206

Query: 182 YATLALV 188
             T  + 
Sbjct: 207 LTTGMVF 213


>gi|315179370|gb|ADT86284.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218]
          Length = 234

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 54/199 (27%), Gaps = 31/199 (15%)

Query: 7   IYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + D ET G +          R  +   V +    +       F      D     EA+ +
Sbjct: 2   VLDTETTGMNLEGGPHYEGHRIIEIGAVEI-INRKLTGRH--FHVYLKPDRAIQDEAIEV 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +  +       E+     +F        +  +N  FD  +    F +    + + 
Sbjct: 59  HGITDEFLVDKP----EYKDVHEEFLDFIRGAELVAHNAPFDVGFMDYEFSKLSIPTAKT 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAK 178
                    D L  +    A +                 L  L    GI+  H   H A 
Sbjct: 115 ---------DELCKVTDTLAMAKKIF-------PGKRNNLDVLCDRYGIDNSHRTLHGAL 158

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +  L+   +  
Sbjct: 159 LDAEILADVYLLMTGGQTS 177


>gi|241759673|ref|ZP_04757773.1| DNA polymerase III subunit [Neisseria flavescens SK114]
 gi|241319681|gb|EER56077.1| DNA polymerase III subunit [Neisseria flavescens SK114]
          Length = 463

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +   DR  + A VR      +   T  +                +T I  
Sbjct: 22  VVVDLETTGGNSYQDRITEVALVRF-----EQGRTTHYEQLVNPCRSIPEFVARLTEIHD 76

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +      V  A+ +  +          ++  +N RFD  + R+ F R   D         
Sbjct: 77  ETVKNAPV-FADIAGDLLPLLQ---GAVVVAHNSRFDYTFLRHEFARIHTDFAA------ 126

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L  ++      P+  +            L  +    GI+  N H A  DV A  
Sbjct: 127 ----PSLCTVQLSRRLYPEFYK----------HSLDSIIERTGIQTANRHRAMTDVVALC 172

Query: 186 ALVW-LIREKKPKLFEYLYD 204
             +   + EK  + ++    
Sbjct: 173 DYLELSLAEKNHQQWDEHVR 192


>gi|329847376|ref|ZP_08262404.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
 gi|328842439|gb|EGF92008.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
          Length = 229

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  +   + +            F      +   +P+A+ + GI+
Sbjct: 5   IVLDTETTGIDHRKGHRLIEIGCIEI-EDLLPTGR--TFHHFVDPEREIEPDAIRVHGIS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +K         + +  + +F        I  +N  FD  +      R     +      
Sbjct: 62  NEKVRGKPK-FGQIADELCEFIGDKR---IIAHNAAFDRGFINMEMERLSRVCHP----- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L++ R  +    +               L  L     I       H A  D  
Sbjct: 113 DDQWIDTLELARNKFPGMAN--------------SLDALCRRFNISLAERDLHGALIDAR 158

Query: 183 ATLALV 188
              ++ 
Sbjct: 159 LLASVY 164


>gi|262171676|ref|ZP_06039354.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|261892752|gb|EEY38738.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 233

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 55/191 (28%), Gaps = 13/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D+ET G +   D       V  + Q   +   + +  +P      +  +V I GIT
Sbjct: 44  LVALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPT--KPLEEGSVVIHGIT 101

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +       E      + + F      I+  +    +  + R            W    
Sbjct: 102 HSELRHAQEPEV----VLSELFDALRGKIVVAHFRHIEREFLRQAT------LNLWDEAV 151

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L++   I        Q   R     S +L    L  G+   + H A  D  AT
Sbjct: 152 EFPIIDTLEIEHYIQNAQRSLWQRLLRRPLN-SVRLGQSRLRYGLPAYSPHHALTDAIAT 210

Query: 185 LALVWLIREKK 195
             L        
Sbjct: 211 AELFQAQYAHH 221


>gi|159484124|ref|XP_001700110.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272606|gb|EDO98404.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 398

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 40/207 (19%)

Query: 6   VIYDYETFGRD----------------VALD-------RPAQFAGVRVDRQWE-KIESTE 41
           ++ D ET G                     D       R    A   +      +++   
Sbjct: 202 LVVDTETTGFPRRLPGTPMNGFIREQVPYTDLEGWSTARIVSIAWRVLAPDGRMELQEHG 261

Query: 42  VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
               +P    +P  +AV I GI+ Q+A ++G+   +    +       N  +I  +N+++
Sbjct: 262 YRIVRPVGFVIP-ADAVQIHGISTQRATQEGLPLDQVLDELMSAIQRWNCGVIVAHNLKY 320

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D     +  YR             N   D+  + R     + +  ++        +  L+
Sbjct: 321 DLNVILSELYR------------RNRAQDVARLERMEGVCTANCSKFYLGRYHKQAELLK 368

Query: 162 DLALANGIEHVNAHDAKADVYATLALV 188
            L      +   AHDA+ D  A     
Sbjct: 369 ALTDE---DMRVAHDAECDAEACAKCY 392


>gi|293390398|ref|ZP_06634732.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950932|gb|EFE01051.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 253

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 31/204 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      +   DP+A+ +
Sbjct: 11  IVLDTETTGMNQLGAHYEGHCIIEIGAV---EMINRRYTGNNFHIYIKPNRPVDPDAIKV 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          +FS+  ++F        +  +N  FD  +    F +        
Sbjct: 68  HGITDEMLADKP----DFSQAANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTN 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +     D L + R +Y                    L  L    GI++     H A 
Sbjct: 124 ---DICLVTDTLTMARQMYPG--------------KKNNLDALCSRLGIDNSKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
            D      +   +   +  LF+  
Sbjct: 167 LDAEILADVYLAMTGGQTSLFDES 190


>gi|255034947|ref|YP_003085568.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter fermentans
           DSM 18053]
 gi|254947703|gb|ACT92403.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter fermentans
           DSM 18053]
          Length = 195

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 56/198 (28%), Gaps = 20/198 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F++ D E  G +   +   Q      D  W  + +       P ++     ++  + G+
Sbjct: 2   SFLVLDIEMTGPEPGWNEIIQIGAEFFDDNWRSLGTYLQ-NVYPENEEAFSVKSEEVHGL 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNT-------CIIGYNNIRFDDYYSRNIFYRNFYD 116
           +        ++  +      ++    N         +I   ++  D  + R  +      
Sbjct: 61  SLDDLEDAPMI-YDVLPEFEKWIKKLNAGKPSLANVVICGQSVINDINFLRFAYRNEKM- 118

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAH 175
                W   N + DL  V    +       +         S  L  +A   G E     H
Sbjct: 119 ----KWGFSNKQLDLHTVSYLFFQILEKNGK-----QVPRSLSLGSVASYFGFEREEETH 169

Query: 176 DAKADVYATLALVWLIRE 193
           +A  D   T        +
Sbjct: 170 NALEDARLTAKCFKEFFK 187


>gi|239906614|ref|YP_002953355.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1]
 gi|239796480|dbj|BAH75469.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1]
          Length = 242

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 16/185 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D E  G D   D     A VR+         T     +P  D     ++  + G+T
Sbjct: 46  FVVLDTELTGFDPKRDAIVSVAAVRLRGLSIMAGETFAALTRPQRDV--PRQSSLVHGLT 103

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                +     A+    + +        +I  +++  D  +      R F D        
Sbjct: 104 ASTLSQA----ADLEAVLLRLLDFIGPAVIVGHHVDLDMGFLNAASRRYFGDELAAP--- 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDD-GATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  +D +R   A+    +           +F L  L    G+    AHDA+ D  A
Sbjct: 157 ------CIDTLRLAMAYEEKRLSLEGGAGLEHAAFDLPSLCRRYGLPEFAAHDARHDALA 210

Query: 184 TLALV 188
              L 
Sbjct: 211 AAYLF 215


>gi|21230449|ref|NP_636366.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769557|ref|YP_244319.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992765|ref|YP_001904775.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112012|gb|AAM40290.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574889|gb|AAY50299.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734525|emb|CAP52735.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris]
          Length = 245

 Score = 78.3 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V      E+  S   F      D   +P A  +TG+T
Sbjct: 4   IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLRPDCDFEPGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V    F+  + +F +  +   +  +N  FD  +  N    +          +
Sbjct: 61  LEFLADKPV----FAEVVEEFLAYIDGAELIIHNAAFDLGFLDNEL--SLLGDQFGRIID 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L + R  Y    +               L  L    G++  H   H A  D  
Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILADVYIALTSGQEEI 176


>gi|328474758|gb|EGF45563.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 239

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 56/194 (28%), Gaps = 12/194 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +           V       +I   +    K       D ++V I GIT
Sbjct: 49  FVALDFETTGLNPEKHDIITIGLVPF--NLRRIFLRDARHWKVRPQKKLDEDSVIIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + +       + S  + +     +  II  +  R +  +          +        
Sbjct: 107 HSELIDAP----DLSDILGELLPCLSGKIIVVHYRRIEREFLDQALKARIGEGIE----- 157

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L +   I   S  GI    +     S +L       G+   + H A  D  AT
Sbjct: 158 -FPVLDTLQIEENIQKRSAGGIWNRLKGKRPESLRLAQSRRRYGLPDYSPHHALTDAIAT 216

Query: 185 LALVWLIREKKPKL 198
             L+          
Sbjct: 217 AELLQAQMAHHYND 230


>gi|297249562|ref|ZP_06933263.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|297173431|gb|EFH32795.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|326554073|gb|ADZ88712.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 235

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 24  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 79

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 80  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                  +  +D  R ++                 S KL       G     + H A  D
Sbjct: 134 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 176

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    +     
Sbjct: 177 AYLTAGLYLHQQGVAKP 193


>gi|227329796|ref|ZP_03833820.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 245

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 58/224 (25%), Gaps = 30/224 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYIKPDRLVDPEAYNV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+       F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGISDEFLADKP-TYADIVDDFLDFIRGAE---LVIHNATFDIGFMDYEFRLLNRDLPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R I+                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLLMARKIFPG--------------KRNSLDALCDRYQIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
            D      +   +   +  L   +     +         + + P
Sbjct: 166 LDAEILAEVYLAMTGGQTSLTFSMEGETQQKSENTETIQRIVRP 209


>gi|322381856|ref|ZP_08055810.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit
           epsilon-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154244|gb|EFX46566.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit
           epsilon-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 957

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D+ET       D   Q   V +D  ++  +                     +TGI
Sbjct: 7   KFAVLDFETT-GTSTTDTIIQVGLVIIDE-FDITDRYTSL---VNPGVRIPSSITSLTGI 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       VE +    ++   S    C++  ++  FD  + +    +  Y  +     
Sbjct: 62  TDEMVENAPSVE-KVMADLYPLLSD---CVLVAHHASFDHAFLQRSLTKAGYPPF----- 112

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +D +R  +                 SF+L  +    GIEH N H A  D   
Sbjct: 113 -TGRVLDTIDALRVAF-------------PSLGSFQLGHVCSLFGIEHENPHQANCDAQV 158

Query: 184 TLALVWLIREK 194
           T  L   I +K
Sbjct: 159 TAELWIRIMQK 169


>gi|323143749|ref|ZP_08078417.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT
           12066]
 gi|322416462|gb|EFY07128.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT
           12066]
          Length = 309

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 55/199 (27%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRD----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           V  D ET G+         R  +   V +            FF     D   D EA  + 
Sbjct: 7   VALDTETTGKSDDGTTGTHRIIEVGCVEI-INRRLTGRQLQFFV--NPDRHIDEEATEVH 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +         A+ +  +  F       I   +N +FD  +    +     + +   
Sbjct: 64  GITDEMLADKPH-FADVANELIDFIRGSELLI---HNAKFDSAFLDKEWDLLKLNEHT-- 117

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
             +     D +++ R I                     L +L     I++     H A  
Sbjct: 118 -KDMCKIVDTVELARKINP--------------NNQANLDNLCSIYDIDNSRRTVHGALL 162

Query: 180 DVYATLALVWLIREKKPKL 198
           D      +   +   +   
Sbjct: 163 DAQLLAEVYLAMTGGQSSF 181


>gi|320450504|ref|YP_004202600.1| putative DNA polymerase III subunit epsilon [Thermus scotoductus
           SA-01]
 gi|320150673|gb|ADW22051.1| putative DNA polymerase III, subunit epsilon [Thermus scotoductus
           SA-01]
          Length = 247

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 53/189 (28%), Gaps = 29/189 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G    L+   +   VR+     +      F         P P    +TGI  
Sbjct: 74  VVLDLETTGLSPGLNEVIEVGLVRL-----EQGERRSFQSLVRPSRPPSPFIERLTGIRA 128

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            +         E   + +          +   N  FD  + R              +   
Sbjct: 129 WELEEAP-SLEEVLEKAYPLLR---GATLVIQNASFDLGFLRPALEGMG-------YSLE 177

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           N   D L + +                 G   + L  L+    +    AH A  DV  TL
Sbjct: 178 NPVVDTLRLAKRA-------------MPGLRRYGLDALSQVLELPPREAHRALGDVERTL 224

Query: 186 ALVWLIREK 194
           A+ + +   
Sbjct: 225 AVAYEVYYM 233


>gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129]
 gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129]
          Length = 1443

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 66/483 (13%), Positives = 147/483 (30%), Gaps = 48/483 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FVI+D ET G     D   +FAG++V     ++E  + F      D         IT I
Sbjct: 407 TFVIFDIETTGLHGRYDSVIEFAGIKVKHN-REVERMQFF---LKIDGPLPAAVTEITKI 462

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +    G+ +     ++  +       ++ +N + FD  + +                
Sbjct: 463 TQAQLED-GMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQ-------------- 505

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                ++  ++               + + G  S  L ++      +  +   H A  D 
Sbjct: 506 -----FEKYNIAPLTNPLIDTLALSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDT 560

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN-----QLRKLIDIQNMTPLVHVSGMFGASRSN 236
            A   +    +E+   +     +  ++          L      T ++++    G ++  
Sbjct: 561 QALKKVFDYFKEQVELMGITNLEQLDQELNQQCHFELLKRTFTNTGIIYIKSQSGFAKLY 620

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296
             L   +  +   +  V+   L    + F   D+         +  +    +   IK V 
Sbjct: 621 ELLSIALTDNNATRPLVLTSTLQKFAKSFVITDNPVQGDIFKAALTKPLKELEAAIKRVD 680

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
                +L+        +  R G+  +     + L+       ++  A+ +  Y     + 
Sbjct: 681 F----VLIAPPGAYAGYTIREGLKKEAIPNAIKLVVDTAQRLNKLVAVASDAYFIHPWEN 736

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQL-STLNLPFSDRRLPELFF------RYRARNFP 409
           +          +  +          EQ    + +  +   L E+ F              
Sbjct: 737 EYYKAIVCAKGLGGRWHRHFNYKEREQRVPNVFVRTTGEMLNEMSFLGEQLAYELVVENT 796

Query: 410 HTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQ 465
           + L+++   D L   +  L    IE     L     S +    GD   + +   + E L+
Sbjct: 797 NKLAKQLTADDLVPVQTKLQPPVIEGSNENLAAKTWSQAKAIYGDPLPKLIEQRIQEELK 856

Query: 466 WVI 468
            +I
Sbjct: 857 AII 859


>gi|170768002|ref|ZP_02902455.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627]
 gi|170123490|gb|EDS92421.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627]
          Length = 243

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 53/200 (26%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      A+ +     +        +  +N  FD  +     +         
Sbjct: 66  HGIADEFLLDKP-TFADVADEFMDYIRGAE---LVIHNAAFDIGFMDYE-FSLLKRDIPK 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L V R ++                    L  L     I++     H A 
Sbjct: 121 TNTF-CKVTDSLAVARKMFPG--------------KRNSLDALCARYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +  +
Sbjct: 166 LDAQILAEVYLAMTGGQTSM 185


>gi|261820459|ref|YP_003258565.1| DNA polymerase III subunit epsilon [Pectobacterium wasabiae WPP163]
 gi|261604472|gb|ACX86958.1| DNA polymerase III, epsilon subunit [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 55/204 (26%), Gaps = 30/204 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  I
Sbjct: 9   IVLDTETTGMNKLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYIKPDRLVDPEAYNI 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +     F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGISDEFLADKP-TYADIADDFLDFIRGAE---LVIHNATFDIGFMDYEFRLLNRDLPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R I+                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLFMARKIFPG--------------KRNSLDALCDRYLIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
            D      +   +   +  L   +
Sbjct: 166 LDAEILAEVYLAMTGGQTSLTFSM 189


>gi|299132474|ref|ZP_07025669.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
 gi|298592611|gb|EFI52811.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
          Length = 297

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 54/183 (29%), Gaps = 32/183 (17%)

Query: 8   YDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            D ET G D   D   + A V  R       +E  E F            E   +TGIT 
Sbjct: 46  VDVETTGLDPDRDEIIELAMVPFRYALDGTVVEVLEPFDRLREPSKPISSEITVLTGITD 105

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  +  +E +             ++  +N  FD  +                    
Sbjct: 106 AMVAGKSIDPSEVT------MFAAPAAVVIAHNAAFDRRF-------------------- 139

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               +    + +   ++    +     +G    KL  LA+A G    + H A  D  A +
Sbjct: 140 ---LERFSPVFSTKPWACSMSEIDWAAEGFEGAKLSYLAMALGF-FYDRHRAANDCLAAI 195

Query: 186 ALV 188
            L+
Sbjct: 196 ELL 198


>gi|257889197|ref|ZP_05668850.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
 gi|257825269|gb|EEV52183.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
          Length = 295

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 67/197 (34%), Gaps = 29/197 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61
           + +V+ D+ET G         Q   ++ +   E+I+     +                IT
Sbjct: 122 DDYVVIDFETTGLSPLDSEILQIGAIKYESN-EEIDR---IYQNIKPFRSNISKRITKIT 177

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+  +  +     E +FS ++  F S      +  +N  FD  +  +    N  +  +  
Sbjct: 178 GLELEDVVNMPTFE-DFSPQLMSFIS---CYTLVAHNAPFDLKFLLHQLNENNIELNQR- 232

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L + R  +                 + KL  L     +++ N+HDA  D 
Sbjct: 233 ----IRVIDTLPLARRHF--------------ETPNHKLITLKDYLNLDN-NSHDALEDC 273

Query: 182 YATLALVWLIREKKPKL 198
             T  +   I+ +  K+
Sbjct: 274 LVTNKVYQYIKHENNKI 290


>gi|312110613|ref|YP_003988929.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y4.1MC1]
 gi|311215714|gb|ADP74318.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y4.1MC1]
          Length = 245

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 61/218 (27%), Gaps = 40/218 (18%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F+I D ET G      D     A  +  R     E+     C    +    P    +TG
Sbjct: 63  TFMIIDMETTGFSPQHGDEILAMAAAKTVR-GAVKETYYTLVC---PEKAIPPHISALTG 118

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       +  E  R    F S     +IGY+      + +        +  YR  W
Sbjct: 119 ITAKDVQYAPRLH-EAMRSFLSFIS--GGVMIGYHIGHDLSFLNHF-----LWTHYRTKW 170

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    +  M     F                  L D     GI     H A  DV+
Sbjct: 171 AARFFDMQPIAEMVQRRWF----------------PTLDDALGHYGISCERRHTADGDVW 214

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
           A   L           +  L     +N +  L D+ + 
Sbjct: 215 AMAEL-----------WAQLLAELKRNNIETLYDLYSA 241


>gi|51596199|ref|YP_070390.1| Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP 32953]
 gi|51589481|emb|CAH21103.1| similar to Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP
           32953]
          Length = 217

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 27/195 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +  +++I D ET G         + + +  D   + +                  E   I
Sbjct: 41  LKRNYLILDTETTGLG-NDAEIIEISII--DCTGKIL-----LDTLVKPLKAIPAEVTAI 92

Query: 61  TGITPQKALRDGV---VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            GIT +          +  +F           +  ++ YN + FD          N    
Sbjct: 93  HGITNEMVADAPTWRDIHYQFM------TLTNDRTLLIYNAL-FDSRLIFQTAAANNCPV 145

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHD 176
               +      +D   VM +   +     QW  + +     +L + A   G+     AH 
Sbjct: 146 PEKKY-----IFDAECVMESYAKYYG---QWDQKRNKFKWQRLSNAAEQQGVVIDGVAHR 197

Query: 177 AKADVYATLALVWLI 191
           A AD   TL ++  +
Sbjct: 198 ALADCKTTLGIIRAM 212


>gi|253689504|ref|YP_003018694.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756082|gb|ACT14158.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 245

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 58/224 (25%), Gaps = 30/224 (13%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNMLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYIKPDRLVDPEAYNV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+       F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGISDEFLADKP-TYADIVDDFLDFIRGAE---LVIHNATFDIGFMDYEFRLLNRDLPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R I+                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLLMARKIFPG--------------KRNSLDALCDRYQIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
            D      +   +   +  L   +     +         + + P
Sbjct: 166 LDAEILAEVYLAMTGGQTSLTFSMEGETQQKNENTETIQRIVRP 209


>gi|156974173|ref|YP_001445080.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|156525767|gb|ABU70853.1| hypothetical protein VIBHAR_01887 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 55/196 (28%), Gaps = 18/196 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +   +       V       +I   +    K       D ++V I GIT
Sbjct: 49  FVALDFETTGLNPQKNGIITIGLVPF--NLNRIFLRQAKHWKVRPQEKLDEDSVIIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + +       +    +          I+  +  R +  +          D    +   
Sbjct: 107 HSELIDAP----DLGEILGPLLESLAGKIVVVHYRRIEREF---------LDQALRTRIG 153

Query: 125 GNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
               + +LD ++          G  W         S +L       G+     H A  D 
Sbjct: 154 EGIEFPVLDTLQIEEDIQQRTSGGLWNKLKGNKPKSLRLAQSRRRYGLPDYTPHHALTDA 213

Query: 182 YATLALVWLIREKKPK 197
            AT  L+        +
Sbjct: 214 IATGELLQAQIAHHYQ 229


>gi|212635110|ref|YP_002311635.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3]
 gi|212556594|gb|ACJ29048.1| DNA polymerase III, epsilon subunit [Shewanella piezotolerans WP3]
          Length = 242

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +I D ET G + +        R  +   V V    +        +  P      D EA+ 
Sbjct: 11  IILDTETTGMNQSSGPIYLGHRIIEIGCVEV-VNRKLTGRHYHEYINPL--QPIDEEAIE 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +          + ++   +F    +   I  +N  FD  +  + F  +      
Sbjct: 68  VHGITNEFVADKPKFH-QIAQSFIEFI---DGAEIVAHNANFDVSFMDHEF--SMLQPIG 121

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
                     D L + + ++    +               L  L    GI++   + H A
Sbjct: 122 PKTAEICQILDSLAIAKYLHPGQKN--------------NLDALCKRYGIDNSRRDLHGA 167

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +  ++   + K 
Sbjct: 168 LLDAEILADVYLIMTGGQTKF 188


>gi|163800687|ref|ZP_02194587.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
 gi|159175036|gb|EDP59833.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
          Length = 239

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 53/196 (27%), Gaps = 18/196 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +   +       V       +I   +    K       D E+V I GIT
Sbjct: 49  FVALDFETTGLNPQKNGIITIGLVPF--SLNRIFLRQARHWKVRPQEKLDEESVIIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + +       +    +          ++  +  R +  +          D    +   
Sbjct: 107 HNELVDAP----DLDEILGPLLESLAGKVVVVHYRRIEREF---------LDQALLTRLG 153

Query: 125 GNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
               + +LD ++             W         S +L       G+     H A  D 
Sbjct: 154 EGIEFPVLDTLKIEEDIQQKTSGGIWNKLKGNKPQSLRLAQSRRRYGLPDYTPHHALTDA 213

Query: 182 YATLALVWLIREKKPK 197
            AT  L+         
Sbjct: 214 IATAELLQAQIAHHYN 229


>gi|225629116|ref|ZP_03787149.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella ceti str. Cudo]
 gi|237817070|ref|ZP_04596062.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           abortus str. 2308 A]
 gi|225615612|gb|EEH12661.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella ceti str. Cudo]
 gi|237787883|gb|EEP62099.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           abortus str. 2308 A]
          Length = 248

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 37  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 92

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 93  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 146

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                  +  +D  R ++                 S KL       G     + H A  D
Sbjct: 147 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 189

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    +     
Sbjct: 190 AYLTAGLYLHQQGVAKP 206


>gi|312978151|ref|ZP_07789895.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus CTV-05]
 gi|310894869|gb|EFQ43939.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus crispatus CTV-05]
          Length = 926

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++                  V +
Sbjct: 7   KDTFAVVDLETTGTQRENGHHIIQFGCAII-KNRKVVKTYSFL---INPHREIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  Q   +    +  ++ +I +        +   +N+ FD  +      ++ Y++   
Sbjct: 63  TGIHDQDVAKQRDFDY-YAPKITKILQN---TVFVAHNVDFDLPFLNYELVQHGYEAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL    GI+H++ H A +D
Sbjct: 117 ----TNKAIDTVELAKIAFPTF-------------PSYKLSDLTTQLGIKHLDPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
            Y T  L+  I  K   L +   +  +
Sbjct: 160 AYGTAVLLLEIFNKLESLPQATLNTLS 186


>gi|257897430|ref|ZP_05677083.1| DNA polymerase subunit III [Enterococcus faecium Com12]
 gi|257833995|gb|EEV60416.1| DNA polymerase subunit III [Enterococcus faecium Com12]
          Length = 291

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 67/197 (34%), Gaps = 29/197 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61
           + +V+ D+ET G         Q   ++ +   E+I+     +                IT
Sbjct: 122 DDYVVIDFETTGLSPLDSEILQIGAIKYESN-EEIDR---IYQNIKPFRSNISKRITKIT 177

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+  +  +     E +FS ++  F S      +  +N  FD  +  +    N  +  +  
Sbjct: 178 GLELEDVVNMPTFE-DFSPQLMSFIS---CYTLVAHNAPFDLKFLLHQLNENNIELNQR- 232

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L + R  +                 + KL  L     +++ N+HDA  D 
Sbjct: 233 ----IRVIDTLPLARRHF--------------ETPNHKLITLKDYLNLDN-NSHDALEDC 273

Query: 182 YATLALVWLIREKKPKL 198
             T  +   I+ +  K+
Sbjct: 274 LVTNKVYQYIKHENNKI 290


>gi|306833904|ref|ZP_07467028.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
 gi|304423905|gb|EFM27047.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
          Length = 827

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 73/203 (35%), Gaps = 29/203 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  + I D E  G   A+    Q   V ++   E +++ +                + +T
Sbjct: 6   SQKYAIVDLEATGAH-AMAEIIQVGIVIIEND-EIVKTYQT---DVNPHEALSEHIINLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++  +     ++ ++ I         C+   +N++FD        +          
Sbjct: 61  GITDEQLAKAP-DFSQVAQEIFNLIED---CVFVAHNVKFDANLLAEQLFMEG------- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           ++    R D +++ +  Y                  + L +LA    ++  +AH A +D 
Sbjct: 110 YELRTPRVDTVELAQVFYPTFE-------------KYSLGNLADVLALDLADAHTAISDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
           YAT  L   ++ K   L + + +
Sbjct: 157 YATAQLFLKLKAKMKSLPKEVLE 179


>gi|56965684|ref|YP_177418.1| hypothetical protein ABC3926 [Bacillus clausii KSM-K16]
 gi|56911930|dbj|BAD66457.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 238

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 58/206 (28%), Gaps = 27/206 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            V++D ET G      D       V+V     ++ + + F+        P  E + +TG+
Sbjct: 54  IVVFDLETSGFHPDQGDGILSIGAVKV--TGNEVHN-DHFYETIKPKQPPCEEVLRLTGL 110

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+      +       + +F+       +  ++   +  + R+  ++           
Sbjct: 111 SLQELDHSPPIN----DVLLRFYDFAGAATLVAHHAAHERKFMRHATWQEL------GRT 160

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +   D   +     A                   L +   A GI     H A AD   
Sbjct: 161 FTHRLIDTTFLTNITAAHQQFQT-------------LDEWCDAYGIAINQRHHALADARM 207

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN 209
           T  L             Y      K 
Sbjct: 208 TAKLWAKHITLAEHAGYYCLGDIYKE 233


>gi|261868455|ref|YP_003256377.1| DNA polymerase III subunit epsilon [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413787|gb|ACX83158.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 253

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 31/204 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      +   DP+A+ +
Sbjct: 11  IVLDTETTGMNQLGAHYEGHCIIEIGAV---EMINRRYTGNNFHIYIKPNRPVDPDAIKV 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          +FS+  +QF        +  +N  FD  +    F +        
Sbjct: 68  HGITDEMLADKP----DFSQVANQFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTN 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +     D L + R +Y                    L  L    GI++     H A 
Sbjct: 124 ---DICLVTDTLTMARQMYPG--------------KKNNLDALCSRLGIDNSKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
            D      +   +   +  LF+  
Sbjct: 167 LDADILADVYLAMTGGQTSLFDES 190


>gi|239636871|ref|ZP_04677870.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           warneri L37603]
 gi|239597545|gb|EEQ80043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           warneri L37603]
          Length = 902

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 60/201 (29%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G  +  D   Q     V +  + I +          D    P    +T I
Sbjct: 5   TYAVVDLETTGNQLDYDDIIQIGITFVRQN-KIIGTYHS---MIRTDLDIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      E +  I+Q       C+   +N+ FD  + +  F             
Sbjct: 61  EETMLEKAPY-FKEIAHDIYQQLQE---CVFVAHNVAFDLNFIKKAFKNC---------- 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    ++             +        S++L +LA A+ I   NAH A  D   
Sbjct: 107 ---------NIKYRPKRVLDTLELFKIAFPTDKSYQLSELAEAHDIPLNNAHRADEDATT 157

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+    EK  +L      
Sbjct: 158 TAQLMIKAFEKFEQLPLDTLK 178


>gi|89052685|ref|YP_508136.1| DNA polymerase III, epsilon subunit [Jannaschia sp. CCS1]
 gi|88862234|gb|ABD53111.1| DNA polymerase III epsilon subunit [Jannaschia sp. CCS1]
          Length = 231

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 59/222 (26%), Gaps = 31/222 (13%)

Query: 6   VIYDYETFGRDVA---LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ D ET G +       R  +   V +   + ++ + + +      +     EA  + G
Sbjct: 4   IVLDTETTGLNPYDMPRHRIVEIGAVEI---FNQVPTGKTYHQYIQPERDMPKEAFDVHG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I          + A+ ++    F        +  +N  FD  +           +     
Sbjct: 61  IGEDFLADKP-IFADIAQDFLDFV---GGDQMVIHNAEFDMRFLNAELEWAGKHALPNDQ 116

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKAD 180
                  D L + R  +  SP                L  L    GI++     H A  D
Sbjct: 117 A-----LDTLKIARQKFPGSPA--------------SLDALCRRFGIDNSAREKHGALLD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
                 +   +   K   F          Q +         P
Sbjct: 158 SEILAEVYLELTGGKQPDFGLSQSKSTPTQQQDENWRPRPRP 199


>gi|320533426|ref|ZP_08034111.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134363|gb|EFW26626.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 259

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 46/172 (26%), Gaps = 25/172 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G   A D   + A V  D       S              D     I G+ 
Sbjct: 42  YAVVDLETTGLSPATDSILEVALVVTDAAGRVERSWSTL---VDPGAGVDVGPTHIHGLV 98

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++ +       + +  +    +     ++ +N      + ++ +  R   D        
Sbjct: 99  AEELIGAPG-LDDVADLLVADLA--GRAVVAHNARFDVGFLTQALGTRGLLD-------- 147

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                      R         ++W        S +L       G+E    H+
Sbjct: 148 -----------RGARVPRVCTMEWARHFMTTPSRRLTTCCEVAGVEIGRHHN 188


>gi|320096178|ref|ZP_08027770.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976891|gb|EFW08642.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 210

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 43/180 (23%), Gaps = 24/180 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G         +   +R+    + ++  E             P    +TGIT 
Sbjct: 20  LVVDVETTGLG-RACEITEIGALRMRGT-QVVDEFEEL---VRPSAPIPPFIEKMTGITT 74

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                          R   +        ++  +N  FD  +                   
Sbjct: 75  DMVAGAD-PVQAVYPRFAAWAGAGAPGRVLVAHNADFDMGFLARAARACSMPW------R 127

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R                    + +L  +A          H A  D  AT
Sbjct: 128 TPPSVDTLSLAR-----------LALPRPVVANHRLGTVARHFRTATAPGHRALGDARAT 176


>gi|316931718|ref|YP_004106700.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           DX-1]
 gi|315599432|gb|ADU41967.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 232

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +   + ++ +   +      +     EA  + G++
Sbjct: 4   IVLDTETTGLDPLRGDRLVEIGCVEI---FNRMPTGRTYHRYLNPERDMPAEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  A+ +    +F        +  +N  FD  +      R            
Sbjct: 61  AEFLADKPL-FAQVADEFLEFI---GDDPLVIHNASFDIGFINAELSRLSRAPVPR---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|227112969|ref|ZP_03826625.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 245

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 58/224 (25%), Gaps = 30/224 (13%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNMLGVHYEGHKIIEIGAVEV-INRRLTGRH--FHVYIKPDRLVDPEAYNV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+       F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGISDEFLADKP-TYADIVDDFLDFIRGAE---LVIHNATFDIGFMDYEFRLLNRDLPKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R I+                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLLMARKIFPG--------------KRNSLDALCDRYQIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
            D      +   +   +  L   +     +         + + P
Sbjct: 166 LDAEILAEVYLAMTGGQTSLTFSMEGETQQKSENTETIQRIVRP 209


>gi|289207535|ref|YP_003459601.1| ribonuclease T [Thioalkalivibrio sp. K90mix]
 gi|288943166|gb|ADC70865.1| ribonuclease T [Thioalkalivibrio sp. K90mix]
          Length = 228

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 63/208 (30%), Gaps = 31/208 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYL 52
           M N F     V+ D ET G D       Q A V + R        + T     +P +   
Sbjct: 14  MANRFRGFLPVVVDVETGGFDCRRHALLQVAAVFLRRDENDHLVRDRTVSLHVRPYEGSE 73

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQF------FSVPNTCIIGYNNIRFDDYYS 106
            DP+++ + GI P   LR    E +   R+          +     I+  +N  FD  + 
Sbjct: 74  MDPKSLEVNGIDPYHPLRAAYPEDQAMGRLFSEVRREVKINHCKRAILVGHNAHFDLGFV 133

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R           N    +  LD +          +   + D           A  
Sbjct: 134 HTAAERCGIK------RNPFHPFSSLDTVSLAALAFGQTVLARAAD-----------AAG 176

Query: 167 NGIEHVNAHDAKADVYATLALVWLIREK 194
            G +   AH A  D   T  +   I  +
Sbjct: 177 LGWDAEAAHSAAFDAEKTADIFCQIANR 204


>gi|222149472|ref|YP_002550429.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
 gi|221736455|gb|ACM37418.1| polymerase epsilon subunit [Agrobacterium vitis S4]
          Length = 326

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 73/244 (29%), Gaps = 39/244 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +I D ET G +   D   +   +    D      + TEV+            +   +TGI
Sbjct: 74  IILDTETTGLNWRKDEIIEIGLIAFTFDSNGNIGDVTEVYGGLQQPSMSIPADITTLTGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       ++ E  + + +        ++  +N  FD  +                  
Sbjct: 134 TDEVVAGQ-SIDMEVVQALIE-----PADLVIAHNAGFDRPF------------------ 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 ++L  M A  A++    +      G    KL  L    G  H   H A  D +A
Sbjct: 170 -----CEMLSPMFAGKAWACSNAEIDWSSRGYEGTKLGYLIGQAGFFHEG-HRAVDDCFA 223

Query: 184 TLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA------SRSN 236
            L +            F  LY    ++++R L +        H+             R  
Sbjct: 224 LLEVLARDNDGTASTAFAELYQASQRSRVRILAENSPFDMKDHLKARGYRWSDGSDGRPK 283

Query: 237 TALI 240
           +  I
Sbjct: 284 SWWI 287


>gi|17988995|ref|NP_541628.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
 gi|260756615|ref|ZP_05868963.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
 gi|260760045|ref|ZP_05872393.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
 gi|260763284|ref|ZP_05875616.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882432|ref|ZP_05894046.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
 gi|261216075|ref|ZP_05930356.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
 gi|261217238|ref|ZP_05931519.1| DNA polymerase III [Brucella ceti M13/05/1]
 gi|261220458|ref|ZP_05934739.1| DNA polymerase III [Brucella ceti B1/94]
 gi|261313312|ref|ZP_05952509.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
 gi|261318701|ref|ZP_05957898.1| DNA polymerase III [Brucella pinnipedialis B2/94]
 gi|261320109|ref|ZP_05959306.1| DNA polymerase III [Brucella ceti M644/93/1]
 gi|265986499|ref|ZP_06099056.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
 gi|265992959|ref|ZP_06105516.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
 gi|265996191|ref|ZP_06108748.1| DNA polymerase III [Brucella ceti M490/95/1]
 gi|17984832|gb|AAL53892.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
 gi|260670363|gb|EEX57303.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
 gi|260673705|gb|EEX60526.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676723|gb|EEX63544.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
 gi|260871960|gb|EEX79029.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
 gi|260917682|gb|EEX84543.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
 gi|260919042|gb|EEX85695.1| DNA polymerase III [Brucella ceti B1/94]
 gi|260922327|gb|EEX88895.1| DNA polymerase III [Brucella ceti M13/05/1]
 gi|261292799|gb|EEX96295.1| DNA polymerase III [Brucella ceti M644/93/1]
 gi|261297924|gb|EEY01421.1| DNA polymerase III [Brucella pinnipedialis B2/94]
 gi|261302338|gb|EEY05835.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
 gi|262550488|gb|EEZ06649.1| DNA polymerase III [Brucella ceti M490/95/1]
 gi|262763829|gb|EEZ09861.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
 gi|264658696|gb|EEZ28957.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
          Length = 233

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 22  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 77

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 78  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 131

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                  +  +D  R ++                 S KL       G     + H A  D
Sbjct: 132 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 174

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    +     
Sbjct: 175 AYLTAGLYLHQQGVAKP 191


>gi|307257347|ref|ZP_07539117.1| hypothetical protein appser10_13450 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864197|gb|EFM96110.1| hypothetical protein appser10_13450 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 248

 Score = 77.9 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 57/215 (26%), Gaps = 30/215 (13%)

Query: 7   IYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           + D ET G   +          +   V V            F          D EA+ + 
Sbjct: 2   VLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVDEEAIKVH 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +      V  AE +    +F       I   +N  FD  +    F        +  
Sbjct: 59  GITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                S  D L V R +Y                    L  L    GI++     H A  
Sbjct: 114 -AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGALL 158

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
           D      +  ++   +  L        N   +  L
Sbjct: 159 DAEILADVFLMMTGGQLALLGEEDASANHENIADL 193


>gi|170288240|ref|YP_001738478.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2]
 gi|170175743|gb|ACB08795.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2]
          Length = 186

 Score = 77.9 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 53/186 (28%), Gaps = 30/186 (16%)

Query: 5   FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G D  A DR  + A V V +   KI   + F                + GI
Sbjct: 8   FCVVDTETTGTDPFAGDRIVEIAAVPVFKG--KIYRNKAFHSLVNPRIRIPALIQKVHGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +                 ++  F       ++ ++N  FD  +   +            +
Sbjct: 66  SNMDIEEAPD-----MDAVYNLFRDYVKGTVLVFHNANFDLTFLDMMAKETGNFPITNPY 120

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D LD+   I+                    L+ L    GI+    H A  D  
Sbjct: 121 ------IDTLDLSEEIFG---------------RPHSLKWLCERLGIKTTIRHRALPDAL 159

Query: 183 ATLALV 188
            T  + 
Sbjct: 160 VTARVF 165


>gi|126724532|ref|ZP_01740375.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacterales bacterium HTCC2150]
 gi|126705696|gb|EBA04786.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacterales bacterium HTCC2150]
          Length = 230

 Score = 77.9 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V     +  + + + +            EA  + G+ 
Sbjct: 4   LVLDTETTGFDPFSGDRIVEIGAV---ELFNHMPTGKTYHQYINPQRAMPAEAFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   R  V  A+ ++    F     T ++  +N  FD  +                   
Sbjct: 61  DEFLARQPV-FADIAQAFVDFV---GTDLLVIHNASFDMKFLNAELDWLGRAKLPMEQS- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                D L + R  +  SP                L  L    G+ +     H A  D  
Sbjct: 116 ----LDTLAIARKKFPGSPA--------------SLDALCRRFGVNNDAREKHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 158 ILAEVYLELIGGRQPDF 174


>gi|293365088|ref|ZP_06611805.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus oralis ATCC 35037]
 gi|291316538|gb|EFE56974.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus oralis ATCC 35037]
          Length = 830

 Score = 77.9 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 33/198 (16%)

Query: 1   MTN----HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M N     +V+ D E      +  +  Q   V +    E I+               D  
Sbjct: 1   MMNARNDRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIIDQYAT---DVNPHEPLDSH 55

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TG+T Q+        ++ + +I +        I   +N++FD        +     
Sbjct: 56  IKELTGLTDQRLAVAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-- 109

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                ++    R D +++ + +Y                  + L  L    GIE  +AH 
Sbjct: 110 -----YELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHT 151

Query: 177 AKADVYATLALVWLIREK 194
           A +D  AT  L+  +R+K
Sbjct: 152 ALSDAQATAELLLYMRQK 169


>gi|194246482|ref|YP_002004121.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193806839|emb|CAP18268.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1522

 Score = 77.9 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 100/358 (27%), Gaps = 31/358 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G     D+  + +G ++ +    I+           +         +T I 
Sbjct: 416 YVVFDIETTGFSKVRDKIIEISGFKI-KNNIVIDQFYSL---VNPEIDLPENIYLLTKIK 471

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       +  +      +F    NTC++ +N      +        N           
Sbjct: 472 NETLKNAPKIL-QVLPDFLKFIK--NTCLVAHNASFDVSFIFEKSKQLNISFPL------ 522

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D +     +    +++         F L+ LA    ++    H AK D  AT
Sbjct: 523 ----LPVIDTLALSQYYFSSFMKF---------FSLKRLAAKFKVKLEEHHRAKDDAKAT 569

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             +   I       ++    Y   +    L      T  ++V         N   +   A
Sbjct: 570 TEIFMKILNLLENEYKVFTFYDLGD---TLSSKYERTYDINVLVSNQIGYRNLFKVLSDA 626

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
               +         S   +  + L               L   +    K +       + 
Sbjct: 627 LTNNFYKKPRVLK-SVLHQYREGLLIGSGCYNGNVFEIALNDDLESLKKAISFYDYIEVQ 685

Query: 305 PIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           P        +E      K   +  L ++++    +    A  +  Y    + +  ++Y
Sbjct: 686 PPQSYNHLIYELGIEGKKIIEQTILKIIQESKKQKKIIIASGDVHYLHPYEKIYREIY 743


>gi|261749409|ref|YP_003257094.1| bifunctional DNA polymerase III subunit alpha/DNA polymerase III,
           epsilon subunit [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497501|gb|ACX83951.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase
           III, epsilon subunit (dnaQ) fusion protein
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 1435

 Score = 77.9 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 62/194 (31%), Gaps = 24/194 (12%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I D ET G  V  +          R  Q A    D     +   + F  KP    +P 
Sbjct: 2   YLIVDTETTGLPVNYNFPISNTENWPRVVQIAWQLHDFSGNLV-EFKNFIIKPDHYDIPF 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             A  I GIT + A ++G       +   + F       +  +N+ FD       F+R  
Sbjct: 61  -NAFKIHGITNEIAEKNGEDLIFVLKEFKKSFEKSK--YLIGHNLEFDIKVIECEFFRK- 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                          D  +V  +         ++         +KL       G +  ++
Sbjct: 117 ---KEQISFKRKKILDTKEVSVSYCQLPGIRKKFKWPTLTELYYKL------FGTKLSHS 167

Query: 175 HDAKADVYATLALV 188
           H+A  DV AT    
Sbjct: 168 HNAANDVKATARCF 181


>gi|290343478|ref|YP_003494845.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1]
 gi|260160893|emb|CAY39593.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1]
          Length = 446

 Score = 77.9 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 62/207 (29%), Gaps = 33/207 (15%)

Query: 5   FVIYDYETFGRDV-----------ALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           +V +D ET G                D  R    + V+   +  +I++      +     
Sbjct: 8   YVAWDTETCGIPKTRVRPTRENLSKFDDARIVSLSAVKFSSRGREIDTFN----RIIKPI 63

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
                A  I GIT + A   GV      +   +F       I+  +N  FD+    +   
Sbjct: 64  GYQVGATHIHGITHEYAEEHGVPFKTAFQEFIEFIGDR-CNILCAHNSLFDEGIIGHELL 122

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R   D  +          D LD             ++ S       +K        G E 
Sbjct: 123 RIGLDPNK----------DFLDKYIFNCTHEMYKKRFLSSIKLTNLYK-----DIFGKEF 167

Query: 172 VNAHDAKADVYATLALVWLIREKKPKL 198
            NAH++ AD  A   +   +     + 
Sbjct: 168 DNAHNSLADARACGQVYPYLMGNTKRE 194


>gi|269926118|ref|YP_003322741.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789778|gb|ACZ41919.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 960

 Score = 77.9 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 79/293 (26%), Gaps = 40/293 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D E  G D   D   Q   V+  +    +                      +TGI 
Sbjct: 7   FVALDLEMTGHDPEQDEIIQIGAVKFTQT-RVLGRWGTL---VRPKVKLPFRIARLTGIN 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P    +  V       ++  F        I  ++I  D  +                   
Sbjct: 63  PNDLNKAPV-FDAVKDKLRSFVGDH---PIVGHSIGNDLSFLAKQGLALDNP-------- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D  ++                      ++ LQ +A A G+   N HDA AD   T
Sbjct: 111 ---SLDTWELAML-------------LMPSLNAYSLQGVASALGVSVDNHHDALADAEIT 154

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN-MTPLVHVSGMFGASRSNTALIAPV 243
             +   +  +  +L   L     +        ++     L        A+R +  + + +
Sbjct: 155 RQVFLGLLARLRRLNPKLVTQVIRLTDNVDWPMKMVFQTLYEEVWQSQAARPSGNIGSLL 214

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQ-------DLDSVQLAKRLFTSHDELKGLVP 289
           A     ++ +    LS   R          +       + +F+   EL    P
Sbjct: 215 ASKGITEEDITSNLLSEPPRPSPLQPKEVTEYLDESYIESIFSPGGELSKTFP 267


>gi|163839979|ref|YP_001624384.1| DNA polymerase III subunit epsilon [Renibacterium salmoninarum ATCC
           33209]
 gi|162953455|gb|ABY22970.1| DNA polymerase III, epsilon chain [Renibacterium salmoninarum ATCC
           33209]
          Length = 228

 Score = 77.9 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 26/194 (13%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET GRD    R    + V VD   + +ES E                  I GI+  +
Sbjct: 12  FDVETTGRDPRQARLVSASIVLVDANNDVVESHEWLA---DPGVEIPEAVTLIHGISTAR 68

Query: 68  ALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           A  +G        E ++ +  +F+   T ++ +N   +D         R    +      
Sbjct: 69  ARAEGAPIGAVVTEVAQVLRSYFA-AGTPVMAFNAP-YDFTVLAAECARIGVSAPTAFPV 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D                             L  +     I  ++AH + AD  A
Sbjct: 127 IDPFVLDKQ-----------------VDGFRRGKRTLVAICEHYNIPLIDAHTSAADALA 169

Query: 184 TLALVWLIREKKPK 197
           T+ L   +  + P+
Sbjct: 170 TIKLAEALARRFPE 183


>gi|289167702|ref|YP_003445971.1| ATP-dependent helicase DinG [Streptococcus mitis B6]
 gi|288907269|emb|CBJ22104.1| ATP-dependent helicase DinG [Streptococcus mitis B6]
          Length = 816

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    + ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGKIVDHYTS---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T ++  +     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDKRLAQAP-DFSQVARKIFDLVKDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +REK  +L + L +
Sbjct: 157 ATAELLLFLREKMAQLPKGLLE 178


>gi|149377478|ref|ZP_01895220.1| exonuclease [Marinobacter algicola DG893]
 gi|149358245|gb|EDM46725.1| exonuclease [Marinobacter algicola DG893]
          Length = 236

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 63/204 (30%), Gaps = 25/204 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63
            ++ D ET G + A D       V +      + +  ++   +P  D     E V I GI
Sbjct: 41  LIVLDLETTGLNPAKDNVIAIGAVAIRHNAIDLSDQFDLILRRPELDIS---ETVLIHGI 97

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+   +    E      +       N   I   +  FD  +      +    +   +W 
Sbjct: 98  GPEALTQGHETE----DALLHLLEWMNGDPILAYHSAFDQKFLEKALKQTLGYTQPHTW- 152

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D+ +++ A Y  S  G +            L + A    +E    H A AD   
Sbjct: 153 -----LDVAEMLPAYYPNSKTGGK-----------GLDNWADFFDLEVSARHHAAADAMV 196

Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207
           T  L   +  K  K         N
Sbjct: 197 TAELTLAVINKAQKNGVVSLRDFN 220


>gi|307300662|ref|ZP_07580437.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti
           BL225C]
 gi|306904196|gb|EFN34781.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti
           BL225C]
          Length = 325

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 61/218 (27%), Gaps = 33/218 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           VI D ET G D       +   V    + + E  +   ++           P+   +TGI
Sbjct: 71  VILDTETTGLDARKCEIIEIGLVSFTYNEEGEIGDVVAIYGGLQQPTIAIPPDITRLTGI 130

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +  A     +          +I  +N  FD  +                  
Sbjct: 131 TDAMVAGQSIDIAAVQAIV------GPADLIIAHNAGFDRPFCEAFSD------------ 172

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +    A++    +      G    KL  L   +G  H   H A  D +A
Sbjct: 173 -----------VFVRKAWACSVSEIDWSGRGFEGTKLGYLIGQSGYFHDG-HRAVDDCFA 220

Query: 184 TLALVWLIREKKP-KLFEYLYDYRNKNQLRKLIDIQNM 220
            L ++           F  LY    ++++R   +    
Sbjct: 221 LLEVLEQSSGGAALPPFAELYKTSQRSRVRIFAENAPF 258


>gi|300724515|ref|YP_003713838.1| DNA polymerase III subunit epsilon [Xenorhabdus nematophila ATCC
           19061]
 gi|297631055|emb|CBJ91741.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Xenorhabdus nematophila ATCC
           19061]
          Length = 249

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V V            F      + L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGRH--FHIYIKPERLVDPEAFEV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +      +  A+ +    +F       I   +N  FD  +    F +   D    
Sbjct: 66  HGISDEFLQDKPL-FADIADEFIEFIRGAELII---HNATFDIGFMDYEFSKLNRDIPPT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +  +  D L + R ++                    L  L     I++     H A 
Sbjct: 122 --ADFCTITDSLMLARKLFPG--------------KRNNLDALCDRYHIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +   +   +  
Sbjct: 166 LDAEILSDVYLAMTGGQTS 184


>gi|38234148|ref|NP_939915.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200410|emb|CAE50098.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           diphtheriae]
          Length = 448

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 59/204 (28%), Gaps = 28/204 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63
           FV  D ET   +       Q    +V R    +E+ + + C P  D     EA + I GI
Sbjct: 105 FVAVDVETT--NSDWGSICQIGAAKV-RDGHVVET-KEWLCTPPGDLNSFDEANIAIHGI 160

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           AE   +   F        +  +N +FD                     
Sbjct: 161 TADMVATAP-SFAECYDQFADF---AGDLPLAAHNAQFDMTAFLRATQAA---------- 206

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    D+      F        +      + KL  ++    +E  N H+A AD  A
Sbjct: 207 ---------DIRLRTTNFGCSLAAARAAHLPIANHKLPTVSQHLHVELRNHHNACADAEA 257

Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207
              ++  + ++            N
Sbjct: 258 CAGILIALTQRLNTEITDFTSAFN 281


>gi|99082698|ref|YP_614852.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99038978|gb|ABF65590.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 243

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 55/221 (24%), Gaps = 40/221 (18%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V        + + E F            EA  + GI 
Sbjct: 4   IVLDTETTGFDPFSGDRIVEIGAV---ELLNHMPTGETFHVYINPQRSMPHEAFGVHGIG 60

Query: 65  PQKAL------------RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           P                +D  + AE  +    F        +  +N  FD  +       
Sbjct: 61  PDLLEPPQPPAPGQVILKDKPLFAEVGQAFLDFVRDSK---MVIHNASFDMKFLNAELGW 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                            D L + R  +  SP                L  L    GI++ 
Sbjct: 118 MNLPQLPMDQA-----IDTLAMARKRFPGSPAT--------------LDALCRRFGIDNS 158

Query: 173 NA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
           N   H A  D      +   +   +   F            
Sbjct: 159 NRTLHGALLDSEILADVYLELIGGRQPDFGLSAQSSGGQNA 199


>gi|322374613|ref|ZP_08049127.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C300]
 gi|321280113|gb|EFX57152.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C300]
          Length = 829

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V+ D E      +  +  Q   V +    E I+               D     +TG
Sbjct: 6   DRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIIDQYAT---DVNPHEPLDSHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+        ++ + +I +        I   +N++FD        +          +
Sbjct: 61  LTDQRLAAAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-------Y 109

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +    R D +++ + +Y                  + L  L    GIE  +AH A +D  
Sbjct: 110 ELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHTALSDAQ 156

Query: 183 ATLALVWLIREK 194
           AT  L+  +R+K
Sbjct: 157 ATAELLLYMRQK 168


>gi|253751390|ref|YP_003024531.1| ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|253753291|ref|YP_003026431.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|253755878|ref|YP_003029018.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251815679|emb|CAZ51270.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|251818342|emb|CAZ56163.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251819536|emb|CAR45129.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7]
          Length = 822

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 29/193 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +N + + D E  G      +  Q   V V    E I+S            L D     +T
Sbjct: 10  SNRYAVVDLEATGTGTD-AKIIQIGIVLV-ENGEIIDSYAT---DINPYELLDDHIKNLT 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +      + +  I+         I   +N++FD        +   Y+     
Sbjct: 65  GITDQQLSQAP-DFGQVASTIYDMI---GDAIFVAHNVKFDANLLAEALFFEGYELLT-- 118

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  +                  + L +LA    +    AH A +D 
Sbjct: 119 -----PRVDTVELSQLFFPTFE-------------KYSLGNLAEHLELGLDQAHTAISDA 160

Query: 182 YATLALVWLIREK 194
            AT  L+  I+EK
Sbjct: 161 MATARLLIKIQEK 173


>gi|160872285|ref|ZP_02062417.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
 gi|159121084|gb|EDP46422.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
          Length = 235

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 70/246 (28%), Gaps = 34/246 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           +I D ET GRD+    R  +          E I+       F C        DP A  I 
Sbjct: 4   IILDTETTGRDINNGHRIIEIGC------LELIDRQLTKRQFHCYLNPGRDSDPGAFAIH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ +  +   V     +  +  F       I   +N  FD  +             + +
Sbjct: 58  GLSTEFLMDKPV-FTTIADELLNFIKDSQLII---HNAPFDLAFLEYELTLTKKKYKKMT 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
             +     D L + R ++    +               L  L     I+H     H A  
Sbjct: 114 --DYCQILDSLLLARQLHPGQRN--------------SLDALCKRYNIDHSKRDKHGALL 157

Query: 180 DVYATLALVWLIREKKPKLF--EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
           D      +   +   +  LF        +   + +K  +   +  +        A ++  
Sbjct: 158 DAELLARVYLAMTGGQTHLFNEPKPLTIQTHARQKKTTEATTLPIIYATCEELTAHKNYL 217

Query: 238 ALIAPV 243
             I  +
Sbjct: 218 NHIYSL 223


>gi|124267443|ref|YP_001021447.1| DNA polymerase III subunit epsilon [Methylibium petroleiphilum PM1]
 gi|124260218|gb|ABM95212.1| DNA polymerase III, epsilon subunit [Methylibium petroleiphilum
           PM1]
          Length = 234

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 56/200 (28%), Gaps = 28/200 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   +  D ET G      DR  +   V       +  S          +     +AV 
Sbjct: 1   MSRQ-IFLDTETTGLSPENGDRIIEIGCV---EMLSRRLSGNNRHFYLNPERRNHEDAVK 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I G+T +         A  +  + ++ +     I   +N  FD  +      R     + 
Sbjct: 57  IHGLTDEFLADKPK-FAVVADELMEYLAGAEIII---HNAAFDVGFLDAELKRLQRPRFA 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                  +  D L + R ++                 S  L  L     +++ +   H A
Sbjct: 113 EQV---GAVTDSLTMAREMFPG--------------KSNSLDALCKRLEVDNASRTLHGA 155

Query: 178 KADVYATLALVWLIREKKPK 197
             D      +   +   +  
Sbjct: 156 LLDAGLLAEVYIRMTRGQNS 175


>gi|308185320|ref|YP_003929453.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
 gi|308061240|gb|ADO03136.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
          Length = 287

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFVDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 TYEDTLNAPSTH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|260777448|ref|ZP_05886342.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607114|gb|EEX33388.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 239

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 54/194 (27%), Gaps = 12/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+  D+ET G D   D       V  +     I     +  +P        E+V I GI
Sbjct: 48  TFLAMDFETTGLDSEQDDIITIGTVPFNLNRIFINQAHHWTVRPR--QQLAEESVIIHGI 105

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    L      +E   ++ +  +     I+  +  R +  +          +       
Sbjct: 106 THSDILDAP-DLSEVYDQVLEQMA---GKIMVVHYQRIEREFFDRALKDRINEGIE---- 157

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + +          GI          S +L       G+     H A  D  A
Sbjct: 158 --FPVVDTMHLETLYQQRLHGGILNKVLGKKPDSVRLGASRARYGLPPYTPHHALTDAVA 215

Query: 184 TLALVWLIREKKPK 197
           T  L+        +
Sbjct: 216 TAELLQAQIAYHYE 229


>gi|308185776|ref|YP_003929907.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1]
 gi|308056286|gb|ADO08458.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1]
          Length = 243

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 52/198 (26%), Gaps = 30/198 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHMYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +         +E +     +        +  +N  FD  +    F +      + 
Sbjct: 66  HGIADEFLADKPA-FSEIADEFLDYIRGAE---LVIHNAPFDIGFMDYEFSKLNRGIEKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLALARRMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKP 196
            D      +   +   + 
Sbjct: 166 LDAEILAEVFLTMTGGQT 183


>gi|126668711|ref|ZP_01739661.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
 gi|126626811|gb|EAZ97458.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
          Length = 294

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 9/143 (6%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           I D ET G   A D+  +   V+V       +  E   +                 ITGI
Sbjct: 51  ILDLETTGLSAANDKIIELGLVKVRVSPSTGQLTEIVSMLDQYEDPGIPIPAVITEITGI 110

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        + E   ++ +          II  +N  FD  +      ++    +  S+ 
Sbjct: 111 TDDMVAGRRLDEGALAQAL------AGDGIILAHNSSFDRGFFEKRLPQHAGRRWACSFQ 164

Query: 124 NGNSRWDLLDVMRAIYAFSPDGI 146
             + R    +  +  Y     G 
Sbjct: 165 GVSWRALGFESSKLEYLLLKSGY 187


>gi|167462331|ref|ZP_02327420.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 816

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D+ET       D   Q   V +D  ++  +                     +TGI
Sbjct: 7   KFAVLDFETT-GTSTTDTIIQVGLVIIDE-FDITDRYTSL---VNPGVRIPSSITSLTGI 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       VE +    ++   S    C++  ++  FD  + +    +  Y  +     
Sbjct: 62  TDEMVENAPSVE-KVMADLYPLLSD---CVLVAHHASFDHAFLQRSLTKAGYPPF----- 112

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +D +R  +                 SF+L  +    GIEH N H A  D   
Sbjct: 113 -TGRVLDTIDALRVAF-------------PSLGSFQLGHVCSLFGIEHENPHQANCDAQV 158

Query: 184 TLALVWLIREK 194
           T  L   I +K
Sbjct: 159 TAELWIRIMQK 169


>gi|78212673|ref|YP_381452.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9605]
 gi|78197132|gb|ABB34897.1| Exonuclease [Synechococcus sp. CC9605]
          Length = 280

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 57/193 (29%), Gaps = 29/193 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +I D ET G D   D+  +   +  D     + + + F             A  I  I
Sbjct: 50  TLLIIDTETSGLDPQQDQCLELGCILFDVPSRSVLAQQSFLLPVD-----SNAAEPINRI 104

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P    R      E            +  ++  +N  FD  +                  
Sbjct: 105 -PAAVTRRPQPWREALVWFEHLLDAAD--LLVAHNAAFDRQWFG---------------- 145

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++      +  + D I+WP+         ++DLALA G+    AH A +D   
Sbjct: 146 -----LGVVPATATPWLCTMDDIRWPAERQLRLRPSVRDLALAYGVPVWAAHRALSDCIY 200

Query: 184 TLALVWLIREKKP 196
              +     + + 
Sbjct: 201 IADVFARCDDLEH 213


>gi|329296922|ref|ZP_08254258.1| DNA polymerase III subunit epsilon [Plautia stali symbiont]
          Length = 237

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 51/199 (25%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHMYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +         A+ +     +        +  +N  FD  +    F     D  + 
Sbjct: 66  HGIADEFLADKP-TFAQIADEFLDYIRGAE---LVIHNASFDIGFMDYEFAMLQRDIGKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                             +    D +   S+        L  L     I++     H A 
Sbjct: 122 E----------------TFCQITDSLAMASKMFPGKRNSLDALCNRFEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPK 197
            D      +   +   +  
Sbjct: 166 LDAGILAEVFLTMTGCQTS 184


>gi|189346782|ref|YP_001943311.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
 gi|189340929|gb|ACD90332.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
          Length = 205

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 19/188 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           FV++D ET G D+  D+      +    ++ E  +S EV   +   + + D +AV + G+
Sbjct: 18  FVVFDTETTGFDLKTDKIISIGAIALTAQRIEVGDSFEVLVRQ---EKVGDRDAVSVHGL 74

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +     G+ E         +       ++   +  FD      + +++F         
Sbjct: 75  LRKDIA-SGIDEKSAVTAFLDYI---GNSVLVAQHAGFDITMVNRVLWKHFGIRLFN--- 127

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D++D      A   +   + +    A  ++L +L     I   + H +  D Y 
Sbjct: 128 ------DVVDTASL--AKRLEKGPYYNLAHKAGEYRLDNLCERYNIRLHDRHTSAGDAYL 179

Query: 184 TLALVWLI 191
           T  L   +
Sbjct: 180 TAQLFQRL 187


>gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
 gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
          Length = 278

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 29/200 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + +D ET G ++    R  + A +R     +++            +   DP+A  I G+
Sbjct: 15  LIFFDVETTGLEIQAGHRICEVAMLR-WEHGQEVGRINTL---INPERELDPQAAQINGL 70

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P +     +   + + ++ Q        +   +N+ FD+ +      R  Y  +     
Sbjct: 71  QPAELNNAPL-FTDIAPQVVQL---SQNAVRIAHNLPFDESFLNMELCRAGYPPF----- 121

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +                  S  L  LA   G+     H A  DV  
Sbjct: 122 -TGPALDTLELARRLGI-------------RRGSLSLAALATTFGLP-APTHRAMDDVLT 166

Query: 184 TLALVWLIREKKPKLFEYLY 203
             AL      +         
Sbjct: 167 LRALFDHFVNEMISFGIITL 186


>gi|307706367|ref|ZP_07643179.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK321]
 gi|307618285|gb|EFN97440.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK321]
          Length = 816

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+ ++     ++ +R+I          I   +N++FD        +   Y+      
Sbjct: 61  LTDQRLVQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE------ 110

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P+  +          + L  L    GI   +AH A +D  
Sbjct: 111 ----LRNPRVDTVELAQVFFPELEK----------YSLPILCRELGIPLKHAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L+  +REK  +L + L +
Sbjct: 157 ATAELLLFLREKMAQLPKGLLE 178


>gi|225868805|ref|YP_002744753.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702081|emb|CAW99711.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 821

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 29/204 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  + + D E            Q   V ++ + E ++S +                  +T
Sbjct: 6   SQKYAVIDLEATSPGPTAS-IIQVGIVIIEGK-EIVDSYQT---DVNPHEPLSDHIKALT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +     ++ +R I +       C+   +N+ FD        +   YD     
Sbjct: 61  GITDQQLAQAP-DFSQVARTIFELIED---CVFVAHNVTFDANLLAEALFLEGYDLLT-- 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  Y                  + L  L+    +   +AH A AD 
Sbjct: 115 -----PRVDTVELAQIFYPCLE-------------KYSLSHLSEVLDLNLSDAHTAIADA 156

Query: 182 YATLALVWLIREKKPKLFEYLYDY 205
            AT  L   +  K   L     + 
Sbjct: 157 QATANLFIKLLHKIESLPRECLET 180


>gi|217980123|ref|YP_002364173.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
 gi|217508294|gb|ACK55079.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 201

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 16/186 (8%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G         + A +  D     +  T V    P        EA  I GIT 
Sbjct: 23  LILDTETTGLG-DDAEVVELAVI--DCAGAVLLDTLVRPSGPVP-----AEAAAIHGITD 74

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                     +E   R           ++ YN+       S+                  
Sbjct: 75  AMLAGAP-TWSELHARFCGLVE--GRQVVIYNHEFDVRVISQTARRYGLQAP-----QGF 126

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +   D   +  A+ A++    +W +        KL   A   G+   NAH A  D   TL
Sbjct: 127 DQVLDPGRIHCAMQAYAEFRGEWSAEKGQYRWQKLSAAAQQQGVTVENAHRALGDCLMTL 186

Query: 186 ALVWLI 191
            +V  +
Sbjct: 187 GVVRAM 192


>gi|304310986|ref|YP_003810584.1| hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1]
 gi|301796719|emb|CBL44931.1| Hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1]
          Length = 300

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 29/193 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D+ET G + +     +   V+     E ++  E+F                +TGIT
Sbjct: 35  LIAIDFETTGLEASSAAITEIGAVKFKISGEIVDQFEMFAY---PGTPIPVRIQELTGIT 91

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +             ++    ++      I +N      +            +  +    
Sbjct: 92  DEMVTGCEPPLF-VWKKFLD-WADGANTFIAHNAPFEARFVRALYEKEGEMPNIYF---- 145

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R             +R    +S+ L++L      +    H A AD  A 
Sbjct: 146 ----IDTLQISR-------------NRLPEESSYSLKNLVK---FKEGEPHRALADAKAC 185

Query: 185 LALVWLIREKKPK 197
             L   +      
Sbjct: 186 STLYCRLASTYRN 198


>gi|295400147|ref|ZP_06810127.1| Exonuclease RNase T and DNA polymerase III [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977926|gb|EFG53524.1| Exonuclease RNase T and DNA polymerase III [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 245

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 61/218 (27%), Gaps = 40/218 (18%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F+I D ET G      D     A  +  R     E+     C    +    P    +TG
Sbjct: 63  TFMIIDMETTGFSPQHGDEILAMAAAKTVR-GAVKETYYTLVC---PEKAIPPHISALTG 118

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       +  E  R    F S     +IGY+      + +        +  YR  W
Sbjct: 119 ITAKDVQYAPRLH-EALRSFLSFIS--GGVMIGYHIGHDLAFLNHF-----LWTHYRTKW 170

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    +  M     F                  L D     GI     H A  DV+
Sbjct: 171 AARFFDMQPIVEMVQRRWF----------------PTLDDALGHYGISCERRHTADGDVW 214

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
           A   L           +  L     +N +  L D+ + 
Sbjct: 215 AMAEL-----------WAQLLAELKRNNIETLYDLYSA 241


>gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 555

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 24/187 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+ +D ET   + A     QF  V    + ++ ES       P+      P    I 
Sbjct: 220 PPSFIAFDVET--ANEANGSICQFGVVVY-HEGKEAESHTWLCQPPSAWPDFTPATTAIH 276

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP K   +     +   ++       N  I+ +N                        
Sbjct: 277 GITPDKVANEPSCH-DRLEQLAALLRKENLPIVAHNAKFDMVALRDAA------------ 323

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R + +D+    +A +    +  +      ++KL  +A + G E  + HDA AD 
Sbjct: 324 ------RAEKVDIPHITFACTYLLAR--ALHPELPNYKLTTVAQSAGSEAFHHHDALADA 375

Query: 182 YATLALV 188
            A   ++
Sbjct: 376 RACGEIM 382


>gi|332186931|ref|ZP_08388672.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17]
 gi|332012941|gb|EGI55005.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17]
          Length = 232

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 54/186 (29%), Gaps = 28/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G   +  DR  +   V       ++E+   +      +     EA  + G++
Sbjct: 4   IVFDTETTGFKFSEGDRLVEIGCV---ELVNRVETGRTYHAYFNPERSMPAEAQAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V    F+  + +F        +  +N  FD  +         +         
Sbjct: 61  DAFLKDKPV----FAEGVAEFLDFIGDAPLIAHNATFDFGFINGELGALGFPHVCEK--- 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L + R+ +  +                 L  L    GI+  H   H A  D  
Sbjct: 114 -TRMVDTLAIARSKHPGA--------------KHTLDALCSRYGIDRSHRVLHGALLDAQ 158

Query: 183 ATLALV 188
               + 
Sbjct: 159 LLAQVY 164


>gi|265989936|ref|ZP_06102493.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
 gi|263000605|gb|EEZ13295.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
          Length = 233

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 22  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 77

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 78  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 131

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                  +  +D  R ++                 S KL       G     + H A  D
Sbjct: 132 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 174

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    ++    
Sbjct: 175 AYLTAGLYLHQQDVAKP 191


>gi|332532199|ref|ZP_08408080.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038297|gb|EGI74742.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 671

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 8/113 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     +R  +   V+V R  + I++          +         +TGI+
Sbjct: 567 YSVVDIETTGGLKGGNRITEIGIVKV-RHGKVIDTWTSL---VNPERHIPGFITSLTGIS 622

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                   V    F+  +          I   +N+ FD  + +       +  
Sbjct: 623 DSMVYNAPV----FADIVKPLLDKLAGSIFVAHNVNFDYGFIKKECEVAGHFF 671


>gi|268592015|ref|ZP_06126236.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
 gi|291312407|gb|EFE52860.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
          Length = 247

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 59/214 (27%), Gaps = 30/214 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAFEV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +      V  AE +    +F        +  +N  FD  +    F +        
Sbjct: 66  HGISDEFLQDKPV-FAEIADEFLEFIRGAE---LVIHNAPFDIGFMDYEFRKLNKGIPPT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +  +  D L + R ++                    L  L     I++     H A 
Sbjct: 122 --QDFCTITDSLVLARKLFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
            D      +   +   +  L   +      N+  
Sbjct: 166 LDAEILSDVYLAMTGGQTSLSFSMDSESANNEQE 199


>gi|195952795|ref|YP_002121085.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195932407|gb|ACG57107.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 196

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 60/203 (29%), Gaps = 27/203 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V+ D ET G +       +     V+++    +            +        ITG
Sbjct: 10  DIYVVLDIETTGLNPDEHEIIEIFAFLVEKE-RITKQFHRL---INPGFFIPRRITEITG 65

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    +    VE      I+ F +     II  +N++FD  +    +    +       
Sbjct: 66  ITNAMLVGQPKVE----GIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNSPN 121

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                                             S+KL  +A    I++   H AK D  
Sbjct: 122 -------------------ICTLELSKKLIPNLKSYKLSAVADYFNIKYERLHRAKDDAL 162

Query: 183 ATLALVWLIREKKPKLFEYLYDY 205
            T  +   + +   + ++    Y
Sbjct: 163 LTYNIFNKLMDIIRRQYKKELSY 185


>gi|312868848|ref|ZP_07729034.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus oris
           PB013-T2-3]
 gi|311095588|gb|EFQ53846.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus oris
           PB013-T2-3]
          Length = 282

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 65/185 (35%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFITG 62
           FV  D ET G + +  +      V+          T  F+   K         +   +TG
Sbjct: 113 FVSLDLETSGLNPSSAQIISIGAVK-----RVAGHTTTFYRLVKLESGKKVPVDIARMTG 167

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +  ++   +GV+  E    +  F       I+GYN + FD+ + +    R          
Sbjct: 168 LNNERLAAEGVLVKEALIDLQAFTK--GLPIVGYNLL-FDERFLQTAVIRTGI------V 218

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D+L  ++    F  +             + L  +    G+++   H++ AD  
Sbjct: 219 QFNNKMVDVLPYVKTTDKFCDN-------------YHLTTVLAKYGVKNEQPHNSLADAT 265

Query: 183 ATLAL 187
           AT+ L
Sbjct: 266 ATMEL 270


>gi|300858286|ref|YP_003783269.1| hypothetical protein cpfrc_00868 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685740|gb|ADK28662.1| hypothetical protein cpfrc_00868 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206006|gb|ADL10348.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis C231]
 gi|302330559|gb|ADL20753.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276241|gb|ADO26140.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis I19]
          Length = 232

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 66/233 (28%), Gaps = 38/233 (16%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET   +    R    A VR+D                        EA  + GIT + 
Sbjct: 19  FDLETTSANPHEARIVSSALVRIDSNGAHPRELLA-----DPGIEIPEEAAKVHGITTEY 73

Query: 68  ALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           A   G    E  +     I Q ++   T I+                       Y  ++D
Sbjct: 74  AREHGRPHEEVLKETIAAIQQAWADGFTLIV-----------------------YNAAYD 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R    D +     F P  I             L DL     +   NAH+A +D  A
Sbjct: 111 LTVLRKLTGDFVVTGPVFDPYVIDKALDKFRRGKRTLTDLCQHYNVRLDNAHEATSDALA 170

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
              + W+  +          +  ++  L +L+  Q +      + +       
Sbjct: 171 AARIAWMQAK------RNFKEELSQKSLNELMQFQAVEYYEFQTKLKNYFEGK 217


>gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX]
 gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 590

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 27/198 (13%)

Query: 14  GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGV 73
           G   A     +   VR+ R  + ++                     +TGIT         
Sbjct: 57  GTHPATAALIEVGAVRL-RDGQVLDEFTTL---VNPHAPVPASITLLTGITTAMVESA-P 111

Query: 74  VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLD 133
             A        F       ++  +N  FD  + +    R+             +  D L 
Sbjct: 112 SPAAALSAFLDFAGFRPGTVLVAHNAPFDVRFLKAACARHGIPWP------SPAVLDTLQ 165

Query: 134 VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE 193
           + R +                  + +L  LA   G  H  AH A  D  AT  ++  +  
Sbjct: 166 LARRLVP-----------RGEVRNHRLDTLARVFG-AHPPAHRALDDARATADVLRGLVG 213

Query: 194 KKP----KLFEYLYDYRN 207
           +        +E L  +R+
Sbjct: 214 RLRARGVDTWEELRAFRS 231


>gi|307250533|ref|ZP_07532477.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857426|gb|EFM89538.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 248

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 57/215 (26%), Gaps = 30/215 (13%)

Query: 7   IYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           + D ET G   +          +   V V            F          + EA+ + 
Sbjct: 2   VLDTETTGMSFSGPPQIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKVH 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +      V  AE +    +F       I   +N  FD  +    F        +  
Sbjct: 59  GITNEFLQDKPV-FAEVADEFIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                S  D L V R +Y                    L  L    GI++     H A  
Sbjct: 114 -AEMCSVTDSLAVARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGALL 158

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
           D      +  ++   +  L        N   +  L
Sbjct: 159 DAEILADVFLMMTGGQLALLGEEDASANHENIADL 193


>gi|237748501|ref|ZP_04578981.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13]
 gi|229379863|gb|EEO29954.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13]
          Length = 247

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 51/195 (26%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G      DR  +   V V       E+    +  P  D    P+A+ + G+T
Sbjct: 4   IVLDTETTGLYANNGDRIIEIGCVEV-LSRHVTENHFHQYINPERDS--HPDALAVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE ++    +       I   +N  FD  +      R            
Sbjct: 61  TEFLSDKPK-FAEIAQAFCDYIRGAELII---HNAPFDIGFLNAELARLGMP-------- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                     +  I     D +             L  L     I   H   H A  D  
Sbjct: 109 ---------KVEEIAECITDSLVKARDMFPGRRNSLDALCERFEISNAHRTLHGALLDSE 159

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 160 LLAEVYLAMTRGQET 174


>gi|302023531|ref|ZP_07248742.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68]
          Length = 822

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 29/193 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +N + + D E  G      +  Q   V V    E I+S            L D     +T
Sbjct: 10  SNRYAVVDLEATGTGTD-AKIIQIGIVLV-ENGEIIDSYAT---DINPYELLDDHIKNLT 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +      + +  I+         I   +N++FD        +   Y+     
Sbjct: 65  GITDQQLSQAP-DFGQVASTIYDMI---GDAIFVAHNVKFDANLLAEALFFEGYELLT-- 118

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  +                  + L +LA    +    AH A +D 
Sbjct: 119 -----PRVDTVELSQLFFPTFE-------------KYSLGNLAEHLELGLDQAHTAISDA 160

Query: 182 YATLALVWLIREK 194
            AT  L+  I+EK
Sbjct: 161 MATARLLIKIQEK 173


>gi|120406462|ref|YP_956291.1| DNA polymerase III subunit epsilon [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959280|gb|ABM16285.1| DNA polymerase III, epsilon subunit [Mycobacterium vanbaalenii
           PYR-1]
          Length = 333

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 69/253 (27%), Gaps = 32/253 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +          +  +        P P    + G+T +
Sbjct: 22  VVDVETSGFRPGQARIVSVAALALSDDGNV---EKSLYSLLDPGVDPGP--THVHGLTAE 76

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                      F   +     V     +  +N+ FD  +          +    +     
Sbjct: 77  MLAGQPA----FGDVVGDLIEVLRGRTLVAHNVGFDYSFLTAEAEMVHAELPVDT----- 127

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
               ++  +                       +L+ LA   G+  +  HDA  D      
Sbjct: 128 ----VMCTVELARRLDLGLDN----------LRLETLAAHWGVTQMKPHDALDDAMVLAQ 173

Query: 187 LVW--LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           ++   L+R ++ + +  ++    +      I      PL  ++       +       VA
Sbjct: 174 ILKPVLVRAQERRKWLPVHPVSRRTWPNGRITHDEFRPLKALAARMP--CAYANPGVFVA 231

Query: 245 WHPRYKDSVIGCN 257
             P  +   +  +
Sbjct: 232 GRPLVQGMRVALS 244


>gi|85375423|ref|YP_459485.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
 gi|84788506|gb|ABC64688.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G D    DR  +   V       ++ + E F      +    P A  + G++
Sbjct: 4   IVFDTETTGLDPKTGDRMVEIGCV---ELMNRVPTGETFHAYYNPERDMPPAAEEVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + +  + +F        +  +N  FD  +          +       +
Sbjct: 61  AAFLSDKPL-FRDTADALLEFL---GDAPLVAHNAGFDFGFLNTE-----LELIEREAIS 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
            +   D + + R  +  +                 L  L    G++  H   H A  D  
Sbjct: 112 LDRMVDTVQIARKKHPGA--------------KVSLDALCSRYGVDRSHRVKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAQVY 163


>gi|223933999|ref|ZP_03625955.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis
           89/1591]
 gi|223897336|gb|EEF63741.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis
           89/1591]
          Length = 822

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 29/193 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +N + + D E  G      +  Q   V V    E I+S            L D     +T
Sbjct: 10  SNRYAVVDLEATGTGTDA-KIIQIGIVLV-ENGEIIDSYAT---DINPYELLDDHIKNLT 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +      + +  I+         I   +N++FD        +   Y+     
Sbjct: 65  GITDQQLSQAP-DFGQVASTIYDMI---GDAIFVAHNVKFDANLLAEALFFEGYELLT-- 118

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  +                  + L +LA    +    AH A +D 
Sbjct: 119 -----PRVDTVELSQLFFPTFE-------------KYSLGNLAEHLELGLDQAHTAISDA 160

Query: 182 YATLALVWLIREK 194
            AT  L+  I+EK
Sbjct: 161 LATARLLIKIQEK 173


>gi|209695823|ref|YP_002263753.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
 gi|208009776|emb|CAQ80082.1| DNA polymerase III, epsilon chain [Aliivibrio salmonicida LFI1238]
          Length = 243

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 61/208 (29%), Gaps = 39/208 (18%)

Query: 2   TNHFVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYL 52
            N  ++ D ET G +          R  +   V      E I        F      D L
Sbjct: 8   PNRIIVLDTETTGMNLSGGPIYEGHRIIEIGAV------EIINRKLTGNHFHVYIKPDRL 61

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            D EA+ + GIT +     G  E    + IH +F +      +  +N  FD  +    F 
Sbjct: 62  IDLEAIDVHGITDEFL--YGKPEY---KDIHDEFLAFIKGAELVAHNAPFDVGFMDYEF- 115

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE- 170
                          S+ + L      Y    D +    +        L  L    GI+ 
Sbjct: 116 ---------------SKLNKLIGTTDQYCKITDTLAMAKKISPGKRNNLDVLCGRYGIDN 160

Query: 171 -HVNAHDAKADVYATLALVWLIREKKPK 197
            H   H A  D      +  L+   +  
Sbjct: 161 SHRTLHGALLDAEILADVYLLMTGGQTS 188


>gi|290991983|ref|XP_002678614.1| predicted protein [Naegleria gruberi]
 gi|284092227|gb|EFC45870.1| predicted protein [Naegleria gruberi]
          Length = 302

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 77/250 (30%), Gaps = 41/250 (16%)

Query: 1   MTNHF-------------------VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE 41
           M N++                   V+ D E    + +  R  + A  R+      I S  
Sbjct: 58  MMNNYSTSSSSTSTTPLFSPRYNVVVLDIEGTSTNTSYCRMIEVACARI-VDGTSISSFT 116

Query: 42  VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
                   DY+P+P    IT IT          +     +++ F S   + ++G+N  RF
Sbjct: 117 SL-VNADIDYIPEP-VQEITKITKAMIDLSPPPQI-VLSQLYNFLSSQPSLVVGHNV-RF 172

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D     N F R    +      +      L          +    Q      G   +KL 
Sbjct: 173 DASVIYNEFVRYKIINNEVHKPDDFISHSLFTNTLCTLKLARRLFQ------GQPDYKLG 226

Query: 162 DLALANGIEHV-NAHDAKADVYATLALVWLIREKK----------PKLFEYLYDYRNKNQ 210
           +L    G+    NAH A ADV  T  L   I  +              F           
Sbjct: 227 NLVENLGLGRSINAHRAHADVSMTTLLWRRIYRESFERLGGEIYPDHEFFLKLQETPAKD 286

Query: 211 LRKLIDIQNM 220
           +RK I++  M
Sbjct: 287 VRKFIEMYKM 296


>gi|311694144|gb|ADP97017.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
          Length = 235

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 25/201 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63
            ++ D ET G + + D       V +      + +  ++   +P  D     E V I GI
Sbjct: 41  LIVLDLETTGLNPSKDEVIAIGAVAIRGGIIHLGDQFDLILRRPELDIR---ETVLIHGI 97

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+   +      E    +       N   I   +  FD  +           +   +W 
Sbjct: 98  GPEALTQG----HEIEDALLYLLEWMNGDPILAYHSAFDQKFLEKTLKAQLGYTQPHTW- 152

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D+ D+M A +  +  G +            L + A   G+E    H A +D  A
Sbjct: 153 -----MDVADLMPAFFPNTKTGGK-----------GLDNWADYFGLEVSERHHAASDALA 196

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L  +   K          
Sbjct: 197 TAELTLVALNKARSEGVKTLK 217


>gi|269966452|ref|ZP_06180536.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
 gi|269828909|gb|EEZ83159.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
          Length = 248

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 56/194 (28%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
           FV  D+ET G +   D       V        I+  +           +   + E+V I 
Sbjct: 58  FVSVDFETTGLNSEEDVILTIGLVPF-----TIDRVQCNGSAHWVVNPNRELNHESVIIH 112

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +        ++    I    S     ++  +    +  +  N    +  +  +  
Sbjct: 113 GITDSEVKNAPQ-LSQILGEILDALS---GKVVLVHYKNIERQFFNNALLNSIGEGIQ-- 166

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D LD+  AI      G     +     S +L       G+     H A  D 
Sbjct: 167 ----FPVVDTLDIEYAIQRRECRGFINKLKGKKPGSVRLGYARERYGLPAYQPHHALTDA 222

Query: 182 YATLALVWLIREKK 195
            AT  L     +  
Sbjct: 223 LATAELFQAQLQYH 236


>gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c]
 gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c]
          Length = 239

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 32/203 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G + +  +R  +   V      E ++       F      D   +  A  +T
Sbjct: 8   IVLDTETTGLEWSKGNRIVEIGAV------ELLDRRLSGDKFHRYLKPDVSFESGAQEVT 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +          EFS    +F +  N   +  +N  FD  +      R    S    
Sbjct: 62  GLTMEFLADKP----EFSMIADEFLAYINGAELIIHNAAFDLGFLDYELSRLG--SQYGK 115

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179
             +  S  D L + R  Y    +               L  L    G++  H   H A  
Sbjct: 116 ITDRASVLDTLVMARERYPGQRN--------------SLDALCKRLGVDNAHRQLHGALL 161

Query: 180 DVYATLALVWLIREKKPKLFEYL 202
           D      +   +   + ++   L
Sbjct: 162 DAQILADVYIALTSGQEEIGFAL 184


>gi|309805626|ref|ZP_07699668.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165064|gb|EFO67305.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
          Length = 225

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 67  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I EK   L     +         L +   +   V           N  LI
Sbjct: 164 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220


>gi|308186683|ref|YP_003930814.1| ribonuclease T [Pantoea vagans C9-1]
 gi|308057193|gb|ADO09365.1| ribonuclease T [Pantoea vagans C9-1]
          Length = 222

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 64/200 (32%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D +    I+ T  F  +P    L  PEA+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    +A G+E     A
Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACIAAGMEFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 181 HSALYDTQQTATLFCELVNR 200


>gi|304397653|ref|ZP_07379530.1| ribonuclease T [Pantoea sp. aB]
 gi|304354825|gb|EFM19195.1| ribonuclease T [Pantoea sp. aB]
          Length = 222

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 64/200 (32%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D +    I+ T  F  +P    L  PEA+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    +A G+E     A
Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACIAAGMEFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 181 HSALYDTQQTATLFCELVNR 200


>gi|329940244|ref|ZP_08289526.1| DNA exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301070|gb|EGG44966.1| DNA exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 251

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 61/193 (31%), Gaps = 16/193 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R      V   R  E +   +              +A+ + GIT ++
Sbjct: 11  FDLETTGTDPYEARIVT-GAVIEVRDGEPLGHRQWLA---DPGVEIPEDAIAVHGITNER 66

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G      +  I +  +        +   N  FD         R+   S        
Sbjct: 67  ATAEGTPPDRVAESIAEVLTGYWRAGVPVVAYNAAFDLTLLGAELRRHGLPSL------- 119

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
             R D  D    +  ++ D               L+ +    G+    AHDA AD  A  
Sbjct: 120 RERLDGADPAPVVDPYTIDRR---VDRYRRGKRNLEAVCGEYGVVLGTAHDATADAVAAA 176

Query: 186 ALVWLIREKKPKL 198
            L   I E+ PK+
Sbjct: 177 RLTRAIAERHPKI 189


>gi|308049181|ref|YP_003912747.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799]
 gi|307631371|gb|ADN75673.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799]
          Length = 240

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 28/198 (14%)

Query: 6   VIYDYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +++D ET G +          +  +   V +    +       +      D   D EA+ 
Sbjct: 10  IVFDTETTGMNQGAGPHYLGHKLIEIGCVEL-INRKPTGR--TYHVYIQPDRPVDEEAIQ 66

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +  +       E +    +F        +  +N  FD  +    F         
Sbjct: 67  VHGITDEFLVGKPR-FGEIAEEFFEFIRGAE---LIAHNANFDIGFIDYEFEMLGR---F 119

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA 177
              ++  S  D L + R             +R +   +  L  L    GI+  H   H A
Sbjct: 120 GKLEDHCSLVDTLQLAREKK----------NRGEIQGNLNLDALCRFYGIDNSHRTLHGA 169

Query: 178 KADVYATLALVWLIREKK 195
             D      +   +   +
Sbjct: 170 LLDAEILADVFLYMTGGQ 187


>gi|325955054|ref|YP_004238714.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323437672|gb|ADX68136.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 453

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 77/231 (33%), Gaps = 29/231 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E  G  V  +     A  R D Q   ++               DP    +T IT
Sbjct: 2   FAILDIEATGGKVGEESIIDIAIFRYDGQ-TTVDQFISL---VNPMRKIDPFVQKLTNIT 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  L       E ++RI +       CI+  +N++FD    R  F +  YD  +     
Sbjct: 58  DKMVLTAPKFH-EIAKRIVEITED---CILVGHNVKFDYRMLRQEFKKLGYDYEK----- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +D         P+            S+ L  L  A GI   + H A  D  AT
Sbjct: 109 -----DWIDTFEFAQKLIPNME----------SYSLGKLTNALGIPITDRHRASGDARAT 153

Query: 185 LALVWLIREKKPKLFEYLYD-YRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           L L  L+R+K  +         R + ++++                +  +R
Sbjct: 154 LKLFQLLRDKDSEKIIQKKSGLRTEKKVKEKYQKLLENLPTKTGLFYFYNR 204


>gi|260436194|ref|ZP_05790164.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109]
 gi|260414068|gb|EEX07364.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109]
          Length = 297

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 29/193 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +I D ET G D   D+  +   +  D     + + + F             A  I  I
Sbjct: 67  TLLIIDTETSGLDPLQDQCLELGCILFDVPSRSVLAQQSFLLPVD-----SNAAEAINRI 121

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P    R      E            +  ++  +N  FD  +                  
Sbjct: 122 -PAAVTRRPQPWREALVWFEHLLDAAD--LLVAHNAAFDRQWFG---------------- 162

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++      +  + + I+WP+     +   ++DLALA G+    AH A +D   
Sbjct: 163 -----LGVVPATATPWLCTMEDIRWPAERQLRSRPSVRDLALAYGVPVWAAHRALSDCIY 217

Query: 184 TLALVWLIREKKP 196
              +     + + 
Sbjct: 218 IAEVFARCDDLEQ 230


>gi|254477303|ref|ZP_05090689.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11]
 gi|214031546|gb|EEB72381.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11]
          Length = 244

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 61/228 (26%), Gaps = 40/228 (17%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V        + + E F      +     EA  + GI 
Sbjct: 4   IVLDTETTGFDPFSGDRIVEIGAV---ELLNHMPTGETFHVYINPERSMPAEAFGVHGIG 60

Query: 65  PQKAL--RDGVV----------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           P      +               A+  +    F       I   +N  FD  +      R
Sbjct: 61  PDLLEPPQQPAPGAVTLRDKPVFAKVGKAFVDFVRDSKMII---HNASFDMKFLNYELER 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
               +            D L + R  +  SP                L  L     I++ 
Sbjct: 118 MGLAALPMDQA-----VDTLAIARKRFPGSPAT--------------LDALCRRFNIDNS 158

Query: 173 NA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
           N   H A  D      +   +   +   F        K+   ++ D +
Sbjct: 159 NRTLHGALLDSEILADVYLELIGGRQPDFGLSTAKSEKSSTVQVDDWR 206


>gi|146318210|ref|YP_001197922.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33]
 gi|146320404|ref|YP_001200115.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33]
 gi|145689016|gb|ABP89522.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33]
 gi|145691210|gb|ABP91715.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33]
 gi|292558009|gb|ADE31010.1| DnaQ exonuclease [Streptococcus suis GZ1]
          Length = 837

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 29/193 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +N + + D E  G      +  Q   V V    E I+S            L D     +T
Sbjct: 25  SNRYAVVDLEATGTGTD-AKIIQIGIVLV-ENGEIIDSYAT---DINPYELLDDHIKNLT 79

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +      + +  I+         I   +N++FD        +   Y+     
Sbjct: 80  GITDQQLSQAP-DFGQVASTIYDMI---GDAIFVAHNVKFDANLLAEALFFEGYELLT-- 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  +                  + L +LA    +    AH A +D 
Sbjct: 134 -----PRVDTVELSQLFFPTFE-------------KYSLGNLAEHLELGLDQAHTAISDA 175

Query: 182 YATLALVWLIREK 194
            AT  L+  I+EK
Sbjct: 176 MATARLLIKIQEK 188


>gi|294085203|ref|YP_003551963.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664778|gb|ADE39879.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 255

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 55/195 (28%), Gaps = 29/195 (14%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G +     R  +   +        + +          +   D  AV + G+T
Sbjct: 4   IALDTETTGINPRDGHRIIEIGCL---ELLHHLPTGNKLHIYINPEREIDEGAVKVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    F+  + +F +      +  +N  FD  +      R            
Sbjct: 61  SAFLADKPL----FADIVDEFLAFIGGDQMVIHNASFDMGFLNAELARLDRP-------- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                 +L + RA+        ++P          L  L     I+  H + H A  D  
Sbjct: 109 ------VLPMDRAVDTLMMARKKFPGAQAN-----LDALCRRFEIDNGHRDLHGALIDAD 157

Query: 183 ATLALVWLIREKKPK 197
              ++   +   K  
Sbjct: 158 LLASVYIELLGGKQP 172


>gi|261323134|ref|ZP_05962331.1| DNA polymerase III [Brucella neotomae 5K33]
 gi|261299114|gb|EEY02611.1| DNA polymerase III [Brucella neotomae 5K33]
          Length = 233

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 22  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 77

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 78  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDMLDQP 134

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
           +      +  +D  R ++                 S KL       G     + H A  D
Sbjct: 135 F------YCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 174

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    +     
Sbjct: 175 AYLTAGLYLHQQGVAKP 191


>gi|296533190|ref|ZP_06895816.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis
           ATCC 49957]
 gi|296266484|gb|EFH12483.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis
           ATCC 49957]
          Length = 304

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 55/187 (29%), Gaps = 36/187 (19%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV----DRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D ET G D   D   + A +      D     +        +PA      PE   +T
Sbjct: 51  LVLDVETTGLDHGQDEIIELAMLPFTYGLDGTLYSVGEAFSRLRQPA--RPIPPEVTALT 108

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T            E +  I          ++  +N  FD  ++               
Sbjct: 109 GLTDAMVAGQSFTPEEVAAFI------GPAALVIAHNAGFDRRFAEA------------- 149

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                          A   ++          +G    +L DLA  +G+     H A  D 
Sbjct: 150 ----------FCPDFAAKPWACSLHGVDWAAEGFEGRRLGDLAARHGLFFDG-HRAVHDC 198

Query: 182 YATLALV 188
            ATL ++
Sbjct: 199 QATLEIL 205


>gi|319757677|gb|ADV69619.1| Rad3-related DNA helicase [Streptococcus suis JS14]
          Length = 837

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 29/193 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +N + + D E  G      +  Q   V V    E I+S            L D     +T
Sbjct: 25  SNRYAVVDLEATGTGTD-AKIIQIGIVLV-ENGEIIDSYAT---DINPYELLDDHIKNLT 79

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +      + +  I+         I   +N++FD        +   Y+     
Sbjct: 80  GITDQQLSQAP-DFGQVASTIYDMI---GDAIFVAHNVKFDANLLAEALFFEGYELLT-- 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  +                  + L +LA    +    AH A +D 
Sbjct: 134 -----PRVDTVELSQLFFPTFE-------------KYSLGNLAEHLELGLDQAHTAISDA 175

Query: 182 YATLALVWLIREK 194
            AT  L+  I+EK
Sbjct: 176 MATARLLIKIQEK 188


>gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
 gi|225202089|gb|EEG84443.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
          Length = 250

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 59/215 (27%), Gaps = 30/215 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V V            F      + L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPERLVDPEAFEV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +    ++       I   +N  FD  +    F +   D    
Sbjct: 66  HGISDEFLEDCP-SFADIADEFLEYIRGAELII---HNASFDIGFMDYEFRKLNRDIPPT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + RA++                    L  L     I++     H A 
Sbjct: 122 E--TFCQITDSLAMARALFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            D      +   +   +  L   +    N  Q + 
Sbjct: 166 LDAEILSDVYLAMTGGQTALAFSMEGESNNEQEQN 200


>gi|291454901|ref|ZP_06594291.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291357850|gb|EFE84752.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 247

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 43/168 (25%), Gaps = 16/168 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A + V       E                  A  + GIT  +
Sbjct: 21  FDLETTGTDPREARIVTAAVIEVADG----ERRGHRTWLADPGIPIPAGATAVHGITDAR 76

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G      +  + +  +        +   N  FD         R+   S       G
Sbjct: 77  AAAEGSPPDRVADAVAEALTGYWRAGVPVVAYNAPFDLTLLAAELRRHRLPSLA-ERLGG 135

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                ++D +    A                S +L  +    G+    
Sbjct: 136 APVGPVIDPLTVDRAV---------DRYRKGSRRLSAVCAEYGVTLEE 174


>gi|239983070|ref|ZP_04705594.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 237

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 43/168 (25%), Gaps = 16/168 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A + V       E                  A  + GIT  +
Sbjct: 11  FDLETTGTDPREARIVTAAVIEVADG----ERRGHRTWLADPGIPIPAGATAVHGITDAR 66

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G      +  + +  +        +   N  FD         R+   S       G
Sbjct: 67  AAAEGSPPDRVADAVAEALTGYWRAGVPVVAYNAPFDLTLLAAELRRHRLPSLA-ERLGG 125

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                ++D +    A                S +L  +    G+    
Sbjct: 126 APVGPVIDPLTVDRAV---------DRYRKGSRRLSAVCAEYGVTLEE 164


>gi|33519691|ref|NP_878523.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia
           floridanus]
 gi|33517354|emb|CAD83739.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia
           floridanus]
          Length = 258

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 71/234 (30%), Gaps = 37/234 (15%)

Query: 2   TNHFVIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLP 53
           +N +V+ D ET G +         R  +   V      E I        F      +   
Sbjct: 5   SNRYVVLDTETTGMNKFGVHYEGHRIIEIGAV------EIINRRLTNNQFHVYLNPNRSV 58

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           D EA  I GI+ Q  +       + +    QF        +  +N  FD  +     +  
Sbjct: 59  DSEAFAIHGISDQFLVDQP-CFLDIANDFLQFIR---GSTLVIHNASFDLGFLNFELHN- 113

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                  + ++  +  D L + R I+    +               L  L     I++  
Sbjct: 114 -IYLNSRTVESYCTVIDSLKLARKIFPGQRN--------------SLDALCERYCIKNSK 158

Query: 174 A--HDAKADVYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLV 224
              H+A  D      +  ++   + +  F  + D  + N L   I   N   L 
Sbjct: 159 RILHNALIDAQLLAYVFLVMTGGQTRIQFMDMLDNSDTNILNNTITHDNKFELC 212


>gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           pneumoniae FH]
          Length = 1443

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 67/483 (13%), Positives = 148/483 (30%), Gaps = 48/483 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FVI+D ET G     D   +FAG++V     ++E  + F      D         IT I
Sbjct: 407 TFVIFDIETTGLHGRYDSVIEFAGIKVKHN-REVERMQFF---LKIDGPLPAAVTEITKI 462

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +    G+ +     ++  +       ++ +N + FD  + +                
Sbjct: 463 TQAQLED-GMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQ-------------- 505

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                ++  ++               + + G  S  L ++      +  +   H A  D 
Sbjct: 506 -----FEKYNIAPLTNPLIDTLALSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDT 560

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN-----QLRKLIDIQNMTPLVHVSGMFGASRSN 236
            A   +    +E+   +     +  ++          L      T ++++    G ++  
Sbjct: 561 QALKKVFDYFKEQVELMGITNLEQLDQELNQQCHFELLKRTFTNTGIIYIKSQSGFAKLY 620

Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296
             L   +  +   +  V+   L    + F   D+         +  +    +   IK V 
Sbjct: 621 ELLSIALTDNNATRPLVLTSTLQKFAKSFVITDNPVQGDIFKAALTKPLKELEAAIKRVD 680

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
                +L+        +  R G+  +     + L+       ++  A+ +  Y     + 
Sbjct: 681 F----VLIAPPDAYAGYTIREGLKKEAIPNAIKLVVDTAQRLNKLVAVASDAYFIHPWEN 736

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQL-STLNLPFSDRRLPELFFR--YRARN----FP 409
           +          +  +          EQ    + +  +   L E+ F     A        
Sbjct: 737 EYYKAIVCAKGLGGRWHRHFNYKEREQRVPNVFVRTTGEMLNEMSFLGEQLAYELVVKNT 796

Query: 410 HTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQ 465
           + L+++   D L   +  L    IE     L     S +    GD   + +   + E L+
Sbjct: 797 NKLAKQLTADDLVPVQTKLQPPVIEGSNENLAAKTWSQAKAIYGDPLPKLIEQRIQEELK 856

Query: 466 WVI 468
            +I
Sbjct: 857 AII 859


>gi|78184888|ref|YP_377323.1| exonuclease [Synechococcus sp. CC9902]
 gi|78169182|gb|ABB26279.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9902]
          Length = 307

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 33/194 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP--EAVF 59
               +I D ET G +       +   +  D Q   + + + F        LP     A  
Sbjct: 75  PRTLLILDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFL-------LPAETNAAEP 127

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I  I P    R      +            +  ++  +N  FD  +              
Sbjct: 128 INRI-PAAVTRLPQPWKQALLWFQNLLDAAD--VLVAHNAAFDRQWFGRGE--------- 175

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                       L  +   +  S + ++WP+     +   ++DLALA G+    AH A  
Sbjct: 176 ------------LPTVTQPWLCSMEDMRWPADRQLRSRPSVRDLALAYGVPVWAAHRALT 223

Query: 180 DVYATLALVWLIRE 193
           D      +     +
Sbjct: 224 DCIYLAEVFARCDD 237


>gi|261753605|ref|ZP_05997314.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
 gi|261743358|gb|EEY31284.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
          Length = 233

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 22  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 77

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 78  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 131

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                  +  +D  R ++                 S KL       G     + H A  D
Sbjct: 132 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARMGHRHGALED 174

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    +     
Sbjct: 175 AYLTAGLYLHQQGVAKP 191


>gi|262273303|ref|ZP_06051118.1| putative exonuclease [Grimontia hollisae CIP 101886]
 gi|262222676|gb|EEY73986.1| putative exonuclease [Grimontia hollisae CIP 101886]
          Length = 198

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 49/186 (26%), Gaps = 19/186 (10%)

Query: 8   YDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
            D ET G     D    +FA +  D +   +                  EA  I GIT  
Sbjct: 28  IDTETTGL--GEDAEICEFAAI--DGRGNVL--INTL---IKPSKPIPAEATAIHGITND 78

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                     E    I          +  YN         +     +  D      D   
Sbjct: 79  MVETAP-TWLEVEGMIAGLLVSRP--VAIYNAEYDIRVIWQTSMISHGKDRAVP--DELE 133

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATL 185
              +   +M     +  +   W          KL   A   G+    NAH A AD   TL
Sbjct: 134 RSINATCIMLEYAEYRGE---WCDSRHQYRWHKLTAAAAHEGVTVEENAHRALADCRMTL 190

Query: 186 ALVWLI 191
            L+  +
Sbjct: 191 GLIKAM 196


>gi|258511090|ref|YP_003184524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477816|gb|ACV58135.1| DNA polymerase III, epsilon subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 240

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 61/242 (25%), Gaps = 48/242 (19%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITGI 63
           FV+ D ET G      R  + A V V          ++ +           PEA  +  I
Sbjct: 8   FVVIDTETTGLPPD-GRVVELALVEVGLDR----EPQIVYSALVDPGCPIPPEASAVHHI 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +             +   +        I+  +N  FD         R         W 
Sbjct: 63  TDRDVAGKPR----LMQIWPKVMGYIGDAILVAHNAEFD---------RGMLPETGRPW- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADV 181
                   +   R       D          A     Q L    GI+      H A  D 
Sbjct: 109 --------ICSKRLAQHLWRD----------APKHSNQVLRYWLGIDVEVGLPHRALGDA 150

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
             T  +         +      +    + +  LI     +P+   +  FG  +       
Sbjct: 151 IVTAHVF-------QRELRAYLEAGYPDDVEALIAFAE-SPIEVQTMPFGKHKGMPLKDV 202

Query: 242 PV 243
           P+
Sbjct: 203 PL 204


>gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 335

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  ++D +    +              P P  V+I G+T
Sbjct: 26  YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDRWYTL---VNPQRDPGP--VWIHGLT 79

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   + +    +     +  ++  +N  FD       F R+           
Sbjct: 80  RETLSDAPL-FPDIATAFAERL---DGRVLVAHNAAFDWSMIAREFARS----------- 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                        +                  + KL+ LA   G+    AH A  D    
Sbjct: 125 --------KTEAPVRQRLCTIALSKELGLPLANHKLETLAAHYGVVQERAHHALDDARVL 176

Query: 185 LALVW 189
                
Sbjct: 177 AETFR 181


>gi|78779006|ref|YP_397118.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|78712505|gb|ABB49682.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str.
           MIT 9312]
          Length = 259

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 29/191 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              +I D ET G D   D   +   +  D  ++ + S   F     ++     EA  +  
Sbjct: 36  EKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLLPVNNN-----EAEHVNC 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +         +      +     +   I  +N+ FD  +                 
Sbjct: 91  IS-AEVTNISQPWEDGLNFFLKLVDCSD--FIVAHNVEFDKKWFGKGR------------ 135

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L ++   +  S D I W  +    T   + DLAL+  I   N H A +D +
Sbjct: 136 ---------LPMLNKKWICSLDDINWSFQKSLKTRPSVTDLALSFSIPVWNLHRALSDCF 186

Query: 183 ATLALVWLIRE 193
               +      
Sbjct: 187 YISEVFKKCDN 197


>gi|315634676|ref|ZP_07889960.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476624|gb|EFU67372.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 253

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 60/203 (29%), Gaps = 31/203 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      +   DPEA+ +
Sbjct: 11  IVLDTETTGMNQLGAHYEGHCIIEIGAV---EMINRRYTGNNFHIYIKPNRPVDPEAIKV 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          +FS+  ++F        +  +N  FD  +    F +        
Sbjct: 68  HGITDEMLADKP----DFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTN 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +     D L + R +Y                    L  L    GI++     H A 
Sbjct: 124 ---DICQVTDTLTMARQMYPG--------------KKNNLDALCSRLGIDNSKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
            D      +   +   +  LF+ 
Sbjct: 167 LDAEILADVYLAMTGGQTSLFDE 189


>gi|259417863|ref|ZP_05741782.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259346769|gb|EEW58583.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 243

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 56/223 (25%), Gaps = 40/223 (17%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V        + + E F      +     EA  + GI 
Sbjct: 4   IVLDTETTGFDPFSGDRIVEIGAV---ELLNHMPTGETFHVYINPERSMPHEAFGVHGIG 60

Query: 65  PQKAL------------RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           P                +D  + AE  +    F        +  +N  FD  +       
Sbjct: 61  PDLLEPPQPAAPGQVTLKDKPLFAEVGQAFLDFVRDSK---MVIHNASFDMKFLNAELGW 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                            D L + R  +  SP                L  L     I++ 
Sbjct: 118 MNLRQLPMEQA-----IDTLAMARKRFPGSPAT--------------LDALCRRFSIDNS 158

Query: 173 NA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
           N   H A  D      +   +   +   F       +      
Sbjct: 159 NRTLHGALLDSEILADVYLELIGGRQPDFGLSTQSGSGQNAAD 201


>gi|259046854|ref|ZP_05737255.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
           adiacens ATCC 49175]
 gi|259036477|gb|EEW37732.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
           adiacens ATCC 49175]
          Length = 875

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 63/205 (30%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   + + D ET G      DR  QF    +    + +E           +     E   
Sbjct: 1   MHRKYAVIDLETTGPKYEQGDRIFQFGCTLI-TDHKIVEH---ITLNINPEQSIPFEIQL 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TG+T     +      E +  I+          +  +N+ FD  +              
Sbjct: 57  LTGVTNADVEKAPY-FDEVAMNIYNLLE---GRTLVAHNVGFDGPFIITALKEALGIELE 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             +       D + + +  Y               A S++L DL     I H   H A +
Sbjct: 113 VPF------IDTVQLAQICY-------------PSAISYRLSDLTNMLKIPHTQVHTAGS 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D  AT  L  +++EK     +   +
Sbjct: 154 DARATAQLFLILQEKIRSFSKVTLE 178


>gi|330832545|ref|YP_004401370.1| Rad3-related DNA helicase [Streptococcus suis ST3]
 gi|329306768|gb|AEB81184.1| Rad3-related DNA helicase [Streptococcus suis ST3]
          Length = 837

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 29/193 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +N + + D E  G      +  Q   V V    E I+S            L D     +T
Sbjct: 25  SNRYAVVDLEATGTGTDA-KIIQIGIVLV-ENGEIIDSYAT---DINPYELLDDHIKNLT 79

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +      + +  I+         I   +N++FD        +   Y+     
Sbjct: 80  GITDQQLSQAP-DFGQVASTIYDMI---GDAIFVAHNVKFDANLLAEALFFEGYELLT-- 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  +                  + L +LA    +    AH A +D 
Sbjct: 134 -----PRVDTVELSQLFFPTFE-------------KYSLGNLAEHLELGLDQAHTAISDA 175

Query: 182 YATLALVWLIREK 194
            AT  L+  I+EK
Sbjct: 176 MATARLLIKIQEK 188


>gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
 gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
          Length = 256

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 31/202 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          EF      F    N   +  +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFE 200
            D      +  ++   +  LF+
Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185


>gi|66968596|ref|YP_245473.1| putative transposase [Pseudomonas aeruginosa]
 gi|66862678|emb|CAI46979.1| putative transposase [Pseudomonas aeruginosa]
 gi|112553494|gb|ABI20463.1| transposase [uncultured bacterium]
          Length = 275

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 24/191 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G         +   +  D     I  T V   +P        EA  I  IT 
Sbjct: 87  IVLDTETTGLG-DDAEICEITIL--DVTGAPILDTLVRPTRP-----IPVEATAIHKITD 138

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      E + +     +     ++ YN         +             ++   
Sbjct: 139 AMVASAP-SWPEVAEQYAAAVA--GRTVVAYNVAFDARLLRQ-------------TYQIH 182

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +L    A+  ++    ++    D     KL + A   G+    AH A AD   TL
Sbjct: 183 GITAPVLTTACAMLMYAEWHGEYDRSRDRWRWLKLIEAATDCGVAEDGAHRALADARMTL 242

Query: 186 ALVWLIREKKP 196
            ++  ++ +  
Sbjct: 243 GVLRYLQRRTN 253


>gi|309791196|ref|ZP_07685728.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
 gi|308226758|gb|EFO80454.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
          Length = 272

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 63/201 (31%), Gaps = 30/201 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            V +D ET G D+    R  + A +RV     +    +        D L DPEA  + G 
Sbjct: 14  LVFFDLETTGLDLRAGHRVCELALLRVRGAAVE----DYLGSALRPDRLLDPEAAAVNGF 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
              +        A  + R+ +     +  ++  +N+ FD  +      R           
Sbjct: 70  QDAELRGAPR-FASVAGRVQRM---AHGAVLIAHNLPFDMAFLNAELARIGQPPLA---- 121

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                           + + D +    R     S+ L  LA   G+     H A ADV A
Sbjct: 122 ----------------SVTLDTLVLARRLLRRPSYSLAALAEHFGLPR-PTHRALADVLA 164

Query: 184 TLALVWLIREKKPKLFEYLYD 204
              +   ++    +L      
Sbjct: 165 LRGVFAQLQLAMAELGVTTLQ 185


>gi|314936410|ref|ZP_07843757.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655029|gb|EFS18774.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 905

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G  +  D   Q     V    +   +          D    P    +T I
Sbjct: 5   SFAVVDLETTGNQLEHDEIIQIGITFVRDN-KISGTYHS---MIRTDLEIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      E +  I++       CI   +N+ FD  + +  F ++          
Sbjct: 61  EETMLEQAPYFH-EIADDIYEQLKD---CIFVAHNVDFDLNFIKKAFEKSNIHF------ 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                   +        S++L +LA A+ I   NAH A  D   
Sbjct: 111 -------------KPKKVLDTLELFKIAFPTEKSYQLSELANAHNIPLTNAHRADEDATT 157

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+    +K   L      
Sbjct: 158 TAYLMIKAFKKFESLPIDTLK 178


>gi|260581298|ref|ZP_05849115.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
 gi|260092047|gb|EEW75993.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
          Length = 256

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 31/203 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          E ++    + +     I   +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKPE-FKEVAQDFLDYINGAELLI---HNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
            D      +  ++   +  LF+ 
Sbjct: 164 LDAEILADVYLMMTGGQTNLFDE 186


>gi|313889930|ref|ZP_07823570.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121696|gb|EFR44795.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 820

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 64/204 (31%), Gaps = 31/204 (15%)

Query: 4   HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + + D E    +   D R  Q   V V    + I+  +                  +TG
Sbjct: 7   KYAVIDLEAT--NAGSDARIIQIGIVIV-ENKKIIDRFQT---DINPHSKLSEHIKSLTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT Q+        ++ + +I +       C+   +N++FD        +   ++      
Sbjct: 61  ITDQQLASAPE-FSQVASQIFELIKD---CVFVAHNVKFDANLLAEALFFEGFELLT--- 113

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R D +++ +  +                  + L  LA    +   +AH A  D  
Sbjct: 114 ----PRMDTVELAQVFF-------------PNLEKYNLGHLAKNMDLHLAHAHTAIDDAL 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYR 206
           AT  L   I++K   L     +  
Sbjct: 157 ATAKLFIKIQKKIESLPRETLEMM 180


>gi|90579019|ref|ZP_01234829.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
 gi|90439852|gb|EAS65033.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
          Length = 249

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 53/191 (27%), Gaps = 12/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +   D       V         + ++ +  KP      D ++V I GIT
Sbjct: 59  FVALDFETTGLNANKDDIISVGLVPFTINRIFCKQSQHWVVKPK--AKLDEDSVIIHGIT 116

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +  R +          ++  +    +  +          +  +     
Sbjct: 117 HSDVQTAP----DIRRILEAVLDSLAGKVVVVHYKAIERQFMDKALRVRLNEGIQ----- 167

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L +   I      G     +     S +L    +  G+     H A  D  AT
Sbjct: 168 -FPVVDTLALESHIQTQQYRGFLARLKGKKPGSVRLGKCRIRYGLPAYQPHHALTDALAT 226

Query: 185 LALVWLIREKK 195
             L+       
Sbjct: 227 AELLQAQIAYH 237


>gi|254361771|ref|ZP_04977906.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica PHL213]
 gi|261494027|ref|ZP_05990530.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496213|ref|ZP_05992619.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|153093306|gb|EDN74302.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica PHL213]
 gi|261308165|gb|EEY09462.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310193|gb|EEY11393.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 258

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 57/198 (28%), Gaps = 31/198 (15%)

Query: 6   VIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           V+ D ET G ++A           +   V V            +          D EA+ 
Sbjct: 10  VVLDTETTGMNMAGGPPQIGHNIIEIGAVEV-INRRLTGR--TYHVYIKPPREVDEEAIA 66

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +      V  AE +     F       I   +N  FD  +    F  ++  +  
Sbjct: 67  VHGITNEFLQDKPV-FAEIAEEFLDFIKGAELII---HNAPFDVAFMDQEF--SYLPNPP 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                  +  D L + R +Y                    L  L    GI++     H A
Sbjct: 121 AKTAEMCTVTDSLQMARRMYPG--------------KRNNLDALCDRLGIDNSKRVLHGA 166

Query: 178 KADVYATLALVWLIREKK 195
             D      +  ++   +
Sbjct: 167 LLDAEILADVFLMMTGGQ 184


>gi|309750446|gb|ADO80430.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2866]
          Length = 256

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 31/202 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G              +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          E ++    + +     I   +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKPE-FKEVAQDFLDYINGAELLI---HNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFE 200
            D      +  ++   +  LF+
Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185


>gi|228476066|ref|ZP_04060774.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           hominis SK119]
 gi|228269889|gb|EEK11369.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           hominis SK119]
          Length = 905

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 27/201 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F + D ET G  +  D   Q     V    +   +          D    P    +T I
Sbjct: 5   SFAVVDLETTGNQLEHDEIIQIGITFVRDN-KISGTYHS---MIRTDLEIPPFIQALTSI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      E +  I++       CI   +N+ FD  + +  F ++          
Sbjct: 61  EETMLEQAPYFH-EIADDIYEQLKD---CIFVAHNVDFDLNFIKKAFEKSNIHF------ 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                   +        S++L +LA A+ I   NAH A  D   
Sbjct: 111 -------------KPKKVLDTLELFKIAFPTEKSYQLSELANAHNIPLTNAHRADEDATT 157

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           T  L+    +K   L      
Sbjct: 158 TAYLMIKAFKKFESLPIDTLK 178


>gi|322516980|ref|ZP_08069870.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus vestibularis ATCC 49124]
 gi|322124463|gb|EFX95958.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus vestibularis ATCC 49124]
          Length = 828

 Score = 76.8 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 29/204 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           TN + I D E            Q   + + +    I+               D   V +T
Sbjct: 6   TNKYAIVDLEATSASSTAC-IIQVG-IVIMQNGLVIDEFAS---DVNPHQELDDHIVHLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +     +E +R I +       CI   +N++FD        +   ++     
Sbjct: 61  GITDQQLSQAP-DFSEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  Y                  +KL  L+    ++   AH A  D 
Sbjct: 112 --LRTPRVDTVELAQVFYPTLEQ-------------YKLSYLSQVLNLDLAQAHTAIEDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYDY 205
            AT  L++ + +K   L     D 
Sbjct: 157 RATGQLLFHLMDKIASLPRQTIDM 180


>gi|312863243|ref|ZP_07723481.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           vestibularis F0396]
 gi|311100779|gb|EFQ58984.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           vestibularis F0396]
          Length = 839

 Score = 76.8 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 29/204 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           TN + I D E            Q   + + +    I+               D   V +T
Sbjct: 17  TNKYAIVDLEATSASSTAC-IIQVG-IVIMQNGLVIDEFAS---DVNPHQELDDHIVHLT 71

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +     +E +R I +       CI   +N++FD        +   ++     
Sbjct: 72  GITDQQLSQAP-DFSEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE----- 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  Y                  +KL  L+    ++   AH A  D 
Sbjct: 123 --LRTPRVDTVELAQVFYPTLEQ-------------YKLSYLSQVLNLDLAQAHTAIEDA 167

Query: 182 YATLALVWLIREKKPKLFEYLYDY 205
            AT  L++ + +K   L     D 
Sbjct: 168 RATGQLLFHLMDKIASLPRQTIDM 191


>gi|75674304|ref|YP_316725.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
 gi|74419174|gb|ABA03373.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 239

 Score = 76.8 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 56/186 (30%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V     + ++ + + F      +     EA  + G++
Sbjct: 4   IVLDTETTGLDPLRGDRLVEIGCV---EMFNRMPTGQTFHRYINPERDMPQEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    F+  + +F        +  +N  FD  +      R    +       
Sbjct: 61  SDFLADKPL----FAHVVDEFLEFIGDAPLVIHNASFDISFINAELDRLKRQAIGR---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|260801297|ref|XP_002595532.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae]
 gi|229280779|gb|EEN51544.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae]
          Length = 208

 Score = 76.8 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 70/214 (32%), Gaps = 33/214 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQF--AGVRVDRQW-------------EKIESTEVFFCKP 47
             FV +D ET G D    +  +   A VR D+                 ++       +P
Sbjct: 1   QTFVFFDLETTGLDQPR-QITEISLAAVRRDQLLTGTTVPPGGATIPRVMDKF-TVCVRP 58

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYY 105
             D    P+A  IT +T Q   +  V + +  + +    +   P  C++ +N  RFD   
Sbjct: 59  RRD--IHPKAAEITNLTNQTLGKHRVFDEDLVKSVVHLLNRQEPPVCLVAHNGNRFDFPI 116

Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
            +     +                D +  ++ +YA        P         K+ +   
Sbjct: 117 LKAELGESETVDLF---PQDVLCVDTMVAIKDLYAGQFKSFSLP---------KIHETLF 164

Query: 166 ANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
                   AH A+ DV   + +V  +  K+   +
Sbjct: 165 GEAPPPEVAHTAEGDVITMVKIVKKLGAKEILQW 198


>gi|307702203|ref|ZP_07639163.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis
           ATCC 35037]
 gi|307624216|gb|EFO03193.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis
           ATCC 35037]
          Length = 829

 Score = 76.8 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V+ D E      +  +  Q   V +    E I+               D     +TG
Sbjct: 6   DRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIIDQYAT---DVNPHEPLDSHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q+        ++ + +I +        I   +N++FD        +          +
Sbjct: 61  LTDQRLAVAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-------Y 109

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +    R D +++ + +Y                  + L  L    GIE  +AH A +D  
Sbjct: 110 ELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHTALSDAQ 156

Query: 183 ATLALVWLIREK 194
           AT  L+  +R+K
Sbjct: 157 ATAELLLYMRQK 168


>gi|285017397|ref|YP_003375108.1| DNA polymerase III, epsilon subunit protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas
           albilineans]
          Length = 244

 Score = 76.8 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 26/202 (12%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V +  +         F      D   +P A  +TG+T
Sbjct: 4   IILDTETTGLEWKKGNRVVEIGAVEL-LERRPSGRH--FHRYLRPDCDFEPGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E      +F    +   +  +N  FD  +      R            
Sbjct: 61  LEFLADKPEFH-EVVDEFLEFI---DGAELVIHNASFDLGFLDYELSRL----------- 105

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
           G S   +LD    +        ++P +        L  L    G++  H   H A  D  
Sbjct: 106 GESYGCILDRASVVDTLLLARERFPGQ-----RNSLDALCKRLGVDNAHRQLHGALLDAQ 160

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
               +   +   + ++   L +
Sbjct: 161 ILCEVYIALTSGQEEIGFALVE 182


>gi|152998334|ref|YP_001343169.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
 gi|150839258|gb|ABR73234.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
          Length = 236

 Score = 76.8 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 17/193 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D ET G D + D       + +    + I      +     +   + E+V I  IT
Sbjct: 51  LLALDLETTGLDPSQDEIISLGLIPL--NHKIIRCQGAKYWMAKPECSLNAESVTIHEIT 108

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +      + A     + +        +I  + +  +  +      + +          
Sbjct: 109 HSELEEAPRLHA----ILDEILLALTHQVIVVHCVAIERQFLLKASMKIYGYPLY----- 159

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +D+ R           W  R     S +L        +    AH A  D  ++
Sbjct: 160 -FPVLDTMDIERQ-----VTFKPWWKRFGRRPSLRLDACRQRYKLPRYKAHHALTDALSS 213

Query: 185 LALVWLIREKKPK 197
             L+         
Sbjct: 214 AELLQAQIAYHMD 226


>gi|315221792|ref|ZP_07863704.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           anginosus F0211]
 gi|315189025|gb|EFU22728.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           anginosus F0211]
          Length = 819

 Score = 76.8 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 29/207 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D E      +  +  Q   V +    + +++ E            DP    +T
Sbjct: 5   KRKYAVVDLEATSAS-SNAKIIQVGIVLI-ENGQIVKTYET---DVNPHEKLDPHIRQLT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T ++  +     ++ +R I++        I   +N++FD        +   ++     
Sbjct: 60  GLTDKRLRKAP-DFSQVAREIYELIED---AIFVAHNVKFDANLLAEALFWEGFELVT-- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  +                  + L  L     I   +AH A AD 
Sbjct: 114 -----PRVDTVELAQVFFPTFE-------------KYNLGILCEQLDIPLKHAHTALADA 155

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNK 208
            AT  L   I+EK  KL + L +Y  K
Sbjct: 156 SATATLFLKIQEKIQKLPKELVEYLLK 182


>gi|322373090|ref|ZP_08047626.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C150]
 gi|321278132|gb|EFX55201.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C150]
          Length = 828

 Score = 76.8 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 29/193 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           TN + I D E      ++    Q   V + +  + I+               D   + +T
Sbjct: 6   TNKYAIVDLEAT-FASSMASIIQVGIV-IMQNGQVIDEFAS---DVNPHQKLDDHIIHLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +     +E +R+I         CI   +N++FD        +          
Sbjct: 61  GITDQQLAQAP-DFSEIARKIFDLIED---CIFVAHNVKFDANLLSEALFMEG------- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           ++    R D +++ +  Y                  +KL  L+    ++   AH A  D 
Sbjct: 110 YELRTPRVDTVELAQVFYPTLEH-------------YKLSHLSKVLNLDLAQAHTAIEDA 156

Query: 182 YATLALVWLIREK 194
            AT  L++ + +K
Sbjct: 157 RATGQLLFHLMDK 169


>gi|332967672|gb|EGK06783.1| DNA-directed DNA polymerase III epsilon subunit [Kingella kingae
           ATCC 23330]
          Length = 252

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 33/198 (16%)

Query: 6   VIYDYETFGRDVAL----DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +I D ET G + +     DR  +FAG+  V+RQ+    +              +P+A+ +
Sbjct: 9   IILDTETTGFEHSAAENPDRMIEFAGLEMVNRQF----TKNNLHLYIHPQRDINPDAIAV 64

Query: 61  TGITPQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            GIT +K   +     AE +++I  F       I   +N +FD  +    F R       
Sbjct: 65  HGITLEKLESENAPVFAEVAQQIFDFIKGAELII---HNAKFDVGFLDAEFARVGLP--- 118

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                  +  D L++ R  Y    +               L  L     ++      H A
Sbjct: 119 -KVKTICTVVDTLEMARDRYPGQKN--------------SLDALCNRLDVDRSRRVLHGA 163

Query: 178 KADVYATLALVWLIREKK 195
             D      +   +   +
Sbjct: 164 LIDCELLGEVYLAMTRGQ 181


>gi|322388190|ref|ZP_08061794.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus infantis ATCC 700779]
 gi|321140862|gb|EFX36363.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus infantis ATCC 700779]
          Length = 816

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 29/193 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E +E               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVEQYAT---DVNPHERLDSHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T ++  +     ++ + +I +        I   +N++FD        +          +
Sbjct: 61  LTDKRLAKAPE-FSQVAEKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-------Y 109

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +    R D +++ +  Y                  + L  L    GI    AH A +D  
Sbjct: 110 ELRTPRIDTVELAQIFY-------------PQLEKYNLGILCQELGIPLEQAHSALSDAQ 156

Query: 183 ATLALVWLIREKK 195
           AT  L   +R+K 
Sbjct: 157 ATAELFLCMRQKM 169


>gi|145637904|ref|ZP_01793548.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
 gi|145268904|gb|EDK08863.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
          Length = 256

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 31/202 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G              +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          E ++    + +     I   +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKPE-FKEVAQDFLDYINGAELLI---HNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFE 200
            D      +  ++   +  LF+
Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185


>gi|297203185|ref|ZP_06920582.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|197717364|gb|EDY61398.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 240

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 6/111 (5%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A V   R  + +   E              +AV + GI+ ++
Sbjct: 11  FDLETTGTDPREARIVT-AAVIELRDGQSLGRREWLA---DPGMEIPADAVAVHGISNER 66

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A  +G    + +  I    +        +   N  FD         R    
Sbjct: 67  AAAEGRPADQVADAIADVLTTYWKTGVPVVAYNAAFDLSLLSAELRRYGLP 117


>gi|71907224|ref|YP_284811.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Dechloromonas aromatica RCB]
 gi|71846845|gb|AAZ46341.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Dechloromonas aromatica RCB]
          Length = 238

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 57/198 (28%), Gaps = 29/198 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G D     R  + A +  V+R++    +          +   D  A  + GI
Sbjct: 4   IVLDTETTGLDPRSGHRIIEVACIEMVNRRF----TGHHLHKYINPEREIDEGAQAVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         A+ +    +F +     I   +N  FD  +      R           
Sbjct: 60  TLEFLADKPK-FADIADEFLEFINGAELII---HNAPFDIGFLNAELDRLGRVPV----- 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
            G     ++D +R                       L  L     I++ +   H A  D 
Sbjct: 111 -GTICNGVIDTLRMAKELH-----------PGKRNSLDALCERYEIDNSSRTLHGALLDT 158

Query: 182 YATLALVWLIREKKPKLF 199
                +   +   +  L 
Sbjct: 159 ELLADVFLAMTRGQNSLM 176


>gi|288929578|ref|ZP_06423422.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329083|gb|EFC67670.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 900

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 31/217 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFC--KPAD---DYLPDP 55
           T   V++D ET G +V  D   Q A V++         +  VF    +P       +P+P
Sbjct: 514 TEEIVVFDTETTGLNVFEDDIVQIAAVKMRAGCVVEGAAFNVFIKTERPIPAMLGDIPNP 573

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
                  I  +      +     ++ +  F       ++  +N  FD    R    R   
Sbjct: 574 -------IVAELQHNTCLP---AAQALQSFMQYVGNSMLLAHNADFDYNILRFNLQR--- 620

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                           +D+      +            G   +KL+ L     +E  N+H
Sbjct: 621 ------------YCPSIDLHATHPTYFDSLKIIRLLQPGLKQYKLKALLEVLHLEGTNSH 668

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
            A  DV AT++LV   R+K  ++      +  + +++
Sbjct: 669 LADEDVQATVSLVGYCRQKAAEMIPAQQQFLARQRVQ 705


>gi|118591451|ref|ZP_01548849.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM
           12614]
 gi|118436123|gb|EAV42766.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM
           12614]
          Length = 237

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 54/184 (29%), Gaps = 29/184 (15%)

Query: 8   YDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           +D ET G +    DR  +  GV        + + + +            EA  + G++ +
Sbjct: 6   FDTETTGLNPRGGDRLVEIGGV---ELINHVATGKSYHVYINPQRDMPEEAFRVHGLSVE 62

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 + E   +    +F        +  +N  FD  +      R    +   S     
Sbjct: 63  FLSDKPLFEH-VADEFLEFV---GDATLVIHNAAFDMGFINMELERAGRRTIPNSQ---- 114

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYAT 184
              D LD+ R  +   P+               L  L    GI++     H A  D    
Sbjct: 115 -VLDTLDLARRKHPSGPN--------------SLDALCSRYGIDNSKRIKHGALLDAEIL 159

Query: 185 LALV 188
             + 
Sbjct: 160 AEVY 163


>gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
 gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
          Length = 893

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 35/221 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---------PDPE 56
           V++D ET G DV  D   + A +R+    + +      + +     L           P 
Sbjct: 513 VVFDTETTGLDVYEDDIIEIAAIRL-HNGKPVGEPLDLYIETNRPILEKLGENENPLYP- 570

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
                 I  +K  +  +++         F++      +  +N+ +D     +   R+  D
Sbjct: 571 ------IYHEKLAKGELLQPN--EAFQLFWNYVGDATLLGHNVMYDRNILHHNLLRHAQD 622

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                    N  +D L +MR                    S+KL+ L     +   N+H 
Sbjct: 623 CMENH---ANPVFDSLKIMRL-------------LQPNLPSYKLETLLERFQLVGENSHK 666

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
           A  DV AT++LV L  EK  K      ++    ++   +  
Sbjct: 667 AIDDVAATISLVALCAEKAAKKQAKQAEFLQHKRVIPFVRK 707


>gi|254699857|ref|ZP_05161685.1| DNA polymerase III, epsilon chain [Brucella suis bv. 5 str. 513]
          Length = 224

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 13  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 69  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                  +  +D  R ++                 S KL       G     + H A  D
Sbjct: 123 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 165

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    +     
Sbjct: 166 AYLTAGLYLHQQGVAKP 182


>gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 327

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  R+D + E  +           +  P P  V+I G+T
Sbjct: 23  YAVVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTV---VNPERDPGP--VWIHGLT 76

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   + +             ++  +N  FD       + R        S   
Sbjct: 77  SEALEGAPL-FRDVAEEFATRLE---GRVLVAHNAVFDWQMIAREYAR------ARSEAP 126

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   + + +                    + KL+ LA   G+    AH A  D    
Sbjct: 127 VKQRLCTIALSK-------------ELGLPLPNHKLESLAAHFGVVQRRAHHALDDARVL 173

Query: 185 LALVW 189
                
Sbjct: 174 AEAFR 178


>gi|327392834|dbj|BAK10256.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355]
          Length = 243

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 60/215 (27%), Gaps = 30/215 (13%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHMYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      ++ +     +        +  +N  FD  +    F +      + 
Sbjct: 66  HGIADEFLLDKP-TFSDIADEFLDYIRGAE---LVIHNASFDIGFMDYEFGKLQRGIEKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLAMARRMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            D      ++  +   +  L     + R + Q  +
Sbjct: 166 LDAEILAEVLLTMTGGQTSLSFSSEEERARQQQSE 200


>gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1]
 gi|71901532|ref|ZP_00683617.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23]
 gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1]
 gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23]
 gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 239

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 32/203 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G + +  +R  +   V      E ++       F      D   +  A  +T
Sbjct: 8   IVLDTETTGLEWSKGNRIVEIGAV------ELLDRRLSGDKFHRYLKPDVSFESGAQEVT 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +          EFS    +F +  N   +  +N  FD  +      R    S    
Sbjct: 62  GLTMEFLADKP----EFSMIADKFLAYINGAELIIHNAAFDLGFLDYELSRLG--SQYGK 115

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179
             +  S  D L + R  Y    +               L  L    G++  H   H A  
Sbjct: 116 ITDRASVLDTLVMARERYPGQRN--------------SLDALCKRLGVDNAHRQLHGALL 161

Query: 180 DVYATLALVWLIREKKPKLFEYL 202
           D      +   +   + ++   L
Sbjct: 162 DAQILADVYIALTSGQEEIGFAL 184


>gi|223041838|ref|ZP_03612026.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202]
 gi|223017331|gb|EEF15754.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202]
          Length = 255

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 52/197 (26%), Gaps = 30/197 (15%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G +            +   V V            F          + EA+ +
Sbjct: 10  VVLDTETTGMNFNGAPHIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         AE       F        +  +N  FD  +  + F        + 
Sbjct: 67  HGITNEFLQDKP-SFAEIVDEFVAFIKGAE---LVIHNAPFDVGFMDHEFSFLANPPPKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R +Y                    L  L    GI++     H A 
Sbjct: 123 --AEMCTVTDSLALARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166

Query: 179 ADVYATLALVWLIREKK 195
            D      +  ++   +
Sbjct: 167 LDAEILADVFLMMTGGQ 183


>gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
 gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
          Length = 230

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 29/221 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I+D ET G D A  DR  +   +       ++ +   F             A  + G++
Sbjct: 4   IIFDTETTGFDPASGDRLVEIGCI---ELLNRVPTGRTFHAYYNPQRSMPAAAEAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    FS  + +  +      +  +N RFD  +  +                
Sbjct: 61  DSFLRDKPL----FSHGVEELLAFLEDSHLVAHNARFDFGFLNHELRLCGLPEVSM---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D + + R ++  +                 L  L    GI+  H   H A  D  
Sbjct: 113 -ARMIDTVAIARQLHPGA--------------KHSLDALCTRYGIDRSHRIKHGALLDAE 157

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
               L   +   +        +   +    +L     + P+
Sbjct: 158 LLAQLYIELTGGRQIGLGLAQEEEKRVANMELAAEVAVRPV 198


>gi|269836971|ref|YP_003319199.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM
           20745]
 gi|269786234|gb|ACZ38377.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM
           20745]
          Length = 658

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 38/130 (29%), Gaps = 14/130 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G      R  + A +R  R   +             +         +TGI 
Sbjct: 88  FVVIDIETTGLRPLRQRIIEVAAIRY-RGGRRQGVFSTL---VNPERPVPAYIRKLTGID 143

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V     +  +  F    +  +IGYN   FD  +      R            
Sbjct: 144 ETALAGAPV-FRRVADELTAFL--GDDLLIGYNV-EFDIAFLNAELKRLGRPPLIN---- 195

Query: 125 GNSRWDLLDV 134
              R DLL +
Sbjct: 196 --PRLDLLPL 203


>gi|148980340|ref|ZP_01816006.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3]
 gi|145961282|gb|EDK26593.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3]
          Length = 238

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 19/201 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++ D ET G D   D       V V +   +I+          +D   + E   I  IT
Sbjct: 51  YIVLDLETTGLDSEQDLILSMGWVDVVKG--RIDLASAKHIYLNNDSQINAETAVINHIT 108

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ    +G    +       FF      II  +    ++ +      R +          
Sbjct: 109 PQML-EEGASIHDAM---LTFFEAAKGKIIVAHACVVEEKFISQYLLRCYG--------- 155

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L ++          ++    +       L       G+   N+H+A AD  +T
Sbjct: 156 ----LRQLPLLWLDTLCIEKSMEKAISNHEEVDLTLAGTRERYGLPEYNSHNALADAVST 211

Query: 185 LALVWLIREKKPKLFEYLYDY 205
             L+   +++     E    +
Sbjct: 212 AELLLAQQKRVVPNDEVTLSF 232


>gi|260429270|ref|ZP_05783247.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260419893|gb|EEX13146.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 230

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 29/196 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V +            +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFEPETGDRIVEIGAVEL-YNHVPTGK--TYHQYINPERSMPNEAFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    F++ +  F        +  +N  FD  +       +           
Sbjct: 61  DDFLRDKPL----FAQIVDDFLEFIGDAKLVIHNAAFDVKFLNAELRWSKRPQLPR---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L++ R  +  SP                L  L    GI++ +   H A  D  
Sbjct: 113 -DCAIDTLEIARRKFPGSPA--------------SLDALCRRFGIDNSSRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKL 198
               +   +   K   
Sbjct: 158 ILADVYLELIGGKQPD 173


>gi|154246978|ref|YP_001417936.1| DNA polymerase III subunit epsilon [Xanthobacter autotrophicus Py2]
 gi|154161063|gb|ABS68279.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
          Length = 298

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 74/270 (27%), Gaps = 45/270 (16%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEAVFIT 61
           + D ET G D   D   + A            +   +S +             PE   IT
Sbjct: 46  VVDVETTGLDPQRDEIIELAMTPFSYGLDGTIFSVGDSFQGLR---QPSEPILPEITAIT 102

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +      +  A  +      F+ P +  I +N      ++ R              
Sbjct: 103 GITNEMVAGQIIDPAVVAT-----FAAPASLFIAHNAAFDRRFFERFSD----------- 146

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                        + +   ++    Q     +G    KL  LA A G    + H A  D 
Sbjct: 147 -------------VFSTKPWACSLSQIDWAAEGFQGAKLAYLAQAAGF-FYDRHRAMHDC 192

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
            AT+ L+ +   +             +    ++    +   L  V    G   +      
Sbjct: 193 LATIELLAMQLPRSGVTGLSRLLDGARTVSWRIWAENSPFDLKDVLKARGYRWNGDP--- 249

Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSV 271
               HPR     I    +      + L + 
Sbjct: 250 --GPHPR--AWYIDVPEAQREAEVRFLSTE 275


>gi|85709813|ref|ZP_01040878.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
 gi|85688523|gb|EAQ28527.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
          Length = 234

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           VI+D ET G D    DR  +   V +     +   +   +  P  D     EA  + G++
Sbjct: 4   VIFDTETTGLDPKTGDRMVEIGCVEM-VGRVETGRSYHAYYNPERDMPSAAEA--VHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      +E +  + +F        +  +N  FD  +      R   +S       
Sbjct: 61  ISFLETKPR-FSETADELLEFL---GDAPLVAHNAGFDFGFLNAELERIGRESIAM---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
            +   D + + R  +  +                 L  L    GI+  H   H A  D  
Sbjct: 113 -DRMVDTVAIARKKHPGA--------------KLSLDALCTRYGIDRSHRVKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAQVY 163


>gi|254514367|ref|ZP_05126428.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3]
 gi|219676610|gb|EED32975.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3]
          Length = 240

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 26/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +V+   R  +   V + +          F      +   D  A+ + GIT
Sbjct: 4   IVLDTETTGLEVSQGHRIIEIGCVEL-QNRLLTGRH--FHRYINPERDIDAGAIEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V  +  ++    F       I   +N  FD  +  +   R   D        
Sbjct: 61  ATFLADKPV-FSAVAKDFVDFVDGAELII---HNAPFDIGFLDSELSR--IDPAALPLAQ 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                D L + R+ +    +               L  L     +++   + H A  D  
Sbjct: 115 RCEITDTLVMARSRHPGQRN--------------SLDALCQRYAVDNSSRDLHGALLDAE 160

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 161 ILADVYLTMTGGQT 174


>gi|90412153|ref|ZP_01220159.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
 gi|90326877|gb|EAS43262.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
          Length = 238

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 55/194 (28%), Gaps = 14/194 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +V  D       V        I   + +  +P      + ++V I  IT
Sbjct: 48  FVAMDFETTGLNVKKDGIITIGLVPFTLNRVYINRAQHWIVRPR--QKLNEQSVVIHNIT 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               L       + S  I    +     ++  +  R +  +          +        
Sbjct: 106 HNDILDAP----DLSEVIEPVLAALAGRVVVVHYRRIEREFLDRALKDRIKEGIE----- 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADVYA 183
                D LD + A      +G  W         S +L       G+     H A  D  A
Sbjct: 157 -FPVIDTLD-LEAHIQQRLNGGFWNKLKGKKPQSVRLAQARKRYGLPAYTPHHALTDAIA 214

Query: 184 TLALVWLIREKKPK 197
           T  L+         
Sbjct: 215 TAELLQAQIAYHYD 228


>gi|92115747|ref|YP_575476.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
 gi|91798641|gb|ABE61016.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
          Length = 239

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +   + ++ + + F      +     EA  + G++
Sbjct: 4   IVLDIETTGLDPLRGDRVVEIGCVEI---FNRMPTGQTFHRYINPERDMPQEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F+  +  F        +  +N  FD  +      R    +       
Sbjct: 61  SEFLAEKPL----FTHIVDDFLEFIGDAPLVIHNASFDISFINAELDRLKMRTIGR---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 221

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 57/193 (29%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G D    R  + A  ++      +E       +      P    V I G++
Sbjct: 15  FAVVDVETSGLDPLRHRVIEVAVTQLTPSGG-LEREWSSLVRARGGTGP----VHIHGLS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+    + +     +  I+  +N  FD  +      R   +        
Sbjct: 70  DYDVRDAPG-FADLVDELSELL---DGRILVAHNAAFDWAFLAAEARRAGRELPVSE--- 122

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R     + R               +    + +L  LA    I   NAH A  DV   
Sbjct: 123 ---RLCTWHLAR-------------GLELPTDNLRLGTLAEYWSIPVENAHRAGDDVRVL 166

Query: 185 LALVWLIREKKPK 197
           + ++    ++  +
Sbjct: 167 VEVLRRCLDEAGR 179


>gi|319764450|ref|YP_004128387.1| exonuclease rnase t and DNA polymerase iii [Alicycliphilus
           denitrificans BC]
 gi|330826666|ref|YP_004389969.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
           denitrificans K601]
 gi|317119011|gb|ADV01500.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
           denitrificans BC]
 gi|329312038|gb|AEB86453.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
           denitrificans K601]
          Length = 221

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 50/188 (26%), Gaps = 14/188 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G +   D       VR+  +            +P         +V I  +  
Sbjct: 43  VALDCETTGLNPRTDEIVSIGAVRIVGERILTSERLELLVRPEKGV--SAGSVRIHRLRE 100

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +     G+   E  RR+  F    +  ++GY          R I+        +   +  
Sbjct: 101 RDLAG-GIPRDEAMRRLMHFI--GSRPLVGYYLEFDVAMLGRAIWPLLGMGLPQRKIEVS 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +D                 +  + +     +   L     +    AHDA  D     
Sbjct: 158 ALYYD---------YKFRQLPPYQQQANADIDLRFSTLMRDLQLPEREAHDALNDAVMAA 208

Query: 186 ALVWLIRE 193
                +R 
Sbjct: 209 MAFIKLRR 216


>gi|225870177|ref|YP_002746124.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
 gi|225699581|emb|CAW93205.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi
           4047]
          Length = 823

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 29/204 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  + + D E            Q   V V+ + E ++S +                  +T
Sbjct: 6   SQKYAVIDLEATSPGPTAS-IIQVGIVIVEGK-EIVDSYQT---DINPHEPLSDHIKALT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +     ++ +R I +       C+   +N+ FD        +   YD     
Sbjct: 61  GITDQQLAQAP-DFSQVARTIFELIED---CVFVAHNVTFDANLLAEALFLEGYDLLT-- 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  Y                  + L  L+    +   +AH A AD 
Sbjct: 115 -----PRVDTVELAQIFY-------------PSLEKYSLSHLSEVLDLNLSDAHTAIADA 156

Query: 182 YATLALVWLIREKKPKLFEYLYDY 205
            AT  L   +  K   L     + 
Sbjct: 157 QATANLFIKLLHKIESLPRECLET 180


>gi|148269564|ref|YP_001244024.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1]
 gi|147735108|gb|ABQ46448.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1]
          Length = 186

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 53/186 (28%), Gaps = 30/186 (16%)

Query: 5   FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G D  A DR  + A V V +   KI   + F                + GI
Sbjct: 8   FCVVDTETTGTDPFAGDRIVEIAAVPVFKG--KIYRNKAFHSLVNPRIRIPALVQKVHGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +                 ++  F       ++ ++N  FD  +   +            +
Sbjct: 66  SNMDIEEAPD-----MDAVYNLFRDYVKGTVLVFHNANFDLTFLDMMAKETGNFPITNPY 120

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D LD+   I+                    L+ L    GI+    H A  D  
Sbjct: 121 ------IDTLDLSEEIFG---------------RPHSLKWLCERLGIKTTIRHRALPDAL 159

Query: 183 ATLALV 188
            T  + 
Sbjct: 160 VTARVF 165


>gi|254786149|ref|YP_003073578.1| DNA polymerase III subunit epsilon [Teredinibacter turnerae T7901]
 gi|237685417|gb|ACR12681.1| DNA polymerase III, epsilon subunit [Teredinibacter turnerae T7901]
          Length = 239

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 53/194 (27%), Gaps = 26/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +     R  +   V     + +  + + F      D   D  A+ + GIT
Sbjct: 4   IVLDTETTGLEPEQGHRIIEIGCV---ELFNRKLTGKHFHQYIRPDREIDEGAIEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V  A+ +     F        +  +N  FD  +  +       +        
Sbjct: 61  NEFLADKPV-FAQIADDFLTFIGDAE---LVIHNAPFDVGFLDHELR--LLNRGLAPIRE 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L   R  +    +               L  L     +++     H A  D  
Sbjct: 115 RCGVLDTLVYARRKHPGQKN--------------NLDALCKRYMVDNSQRDLHGALLDAE 160

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 161 ILADVYLAMTGGQT 174


>gi|225849248|ref|YP_002729412.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643190|gb|ACN98240.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 204

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 58/193 (30%), Gaps = 20/193 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V++D ET G +   D       V++ +    +   + F+     +   + E + I G
Sbjct: 32  DEYVVFDTETTGLNPKTDDILSIGAVKIKQNRILLN--DRFYTVVKPEREINEETIKIHG 89

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +  +     G+   +  +   +F    +  ++GY         ++               
Sbjct: 90  LRKKDLEN-GIPIEKAIKDFLRFI--GSRPLVGYYIDFDVAMINKYTKKIIGIPLPNKKI 146

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +     +D                +  +   G    +   +     I     HDA  D  
Sbjct: 147 EVSGMYYD---------------YKIGTIPQGFVDLRFDSILKGLKIPSFGKHDALNDAI 191

Query: 183 ATLALVWLIREKK 195
            T  +   ++ K 
Sbjct: 192 MTGLIFLKLKSKN 204


>gi|317969731|ref|ZP_07971121.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp.
           CB0205]
          Length = 302

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 60/229 (26%), Gaps = 29/229 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +I D ET G   A  R  +   V        + S   F             A  + GI 
Sbjct: 73  LLILDTETTGLSPAEHRCIEVGAVLFSVPDRSVLSQVSFLMPCT-----SNAAEAVNGIA 127

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P    +                   +  ++  +N  FD  +                   
Sbjct: 128 PA-LTQRPQPWQAGLACFEAMVEAAD--VLLAHNAAFDQQWFG----------------- 167

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +   +  S + I+WP      ++  ++DLALA G+    AH A  D    
Sbjct: 168 ----LGSLPALSKPWLCSMEDIRWPQERQLRSTPSVRDLALAYGVPVWAAHRALTDCIYL 223

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
             +     + +  L + +   R         +               + 
Sbjct: 224 AQVFERCEDLEDLLLQAMEPRRLYRARLSYEERHKAREAGFRWNQPVSG 272


>gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 254

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 31/204 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D   DPEA+ +
Sbjct: 11  IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPEAIKV 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          +FS+  ++F        +  +N  FD  +    F +        
Sbjct: 68  HGITDEMLADKP----DFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFRKLNLPIKTN 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +  +  D L + R +Y                    L  L     I++     H A 
Sbjct: 124 ---DICTVTDTLVMARQMYPG--------------KKNNLDALCSRLDIDNSKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
            D      +   +   +  LF+  
Sbjct: 167 LDAEILADVYLAMTGGQTSLFDES 190


>gi|116514157|ref|YP_813063.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093472|gb|ABJ58625.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 261

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 66/205 (32%), Gaps = 31/205 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + ++D ET G+     +  Q   ++V    + +     +          +     +TGI+
Sbjct: 8   YTVFDLETTGK-----KIIQIGALKVRDD-QTVAKFSTY---VNPLEKINDYVSHLTGIS 58

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +     +++ E       F    +  ++G+N + FD     +             +  
Sbjct: 59  NYQTDAAPLID-EVMPDFLDFV--GDDTLVGHNILSFDCNVLADNG-----------YPV 104

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N + D L         +    +     D   + +L  +    GI   N+H A +D    
Sbjct: 105 ANPKLDTL-------LLANSYKKRGLFADPIPNVRLSTMKEYYGINI-NSHIAISDCITN 156

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
             +   +R+        + D+  K 
Sbjct: 157 NIVYQKLRDGDLAKATEIIDFTPKQ 181


>gi|89067418|ref|ZP_01154931.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola granulosus HTCC2516]
 gi|89046987|gb|EAR53041.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola granulosus HTCC2516]
          Length = 230

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 53/197 (26%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +D           +            EA  + G+ 
Sbjct: 4   IVLDTETTGFDPEDGDRIVEIGAVELD-NHMPTGR--TYHQYINPQRAMPREAFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V    F+R    F        +  +N  FD  +               S   
Sbjct: 61  DEFLADKPV----FARIGRAFLDFVGDARLVIHNASFDMKFLNAELGWANLPRLPDSQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D + + R+ +  SP                L  L    GI++     H A  D  
Sbjct: 116 ----LDTVAMARSKFPGSP--------------VSLDALCRRFGIDNSARTYHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 158 ILAEVYLELIGGRQPDF 174


>gi|325912570|ref|ZP_08174953.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|325477991|gb|EGC81120.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
          Length = 241

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 67  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITSTLHIKHANPHRADSDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I +K   L     +         L +   +   V           N  LI
Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220


>gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 328

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR    A  ++D +    +              P P  V+I G+T
Sbjct: 26  YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTL---VNPQRDPGP--VWIHGLT 79

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E +  + +  +     ++  +N  FD       + R+           
Sbjct: 80  EEVLEGAPR-FPEIAGELAERLADR---VLVAHNAAFDWSMLAREYARS----------- 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                        +                  + KL+ LA   G+    AH A  D    
Sbjct: 125 --------KSAAPVRQRLCTIALSKELGLPLPNHKLETLAAHYGVVQRRAHHALDDARVL 176

Query: 185 LALVW 189
                
Sbjct: 177 AETFR 181


>gi|189501071|ref|YP_001960541.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1]
 gi|189496512|gb|ACE05060.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1]
          Length = 180

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 58/194 (29%), Gaps = 32/194 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G      DR  + A V +      IE    F C    +         I GIT
Sbjct: 14  VAVDVETTGLSPLRGDRVIEVAAVAIVNG--VIEEH--FCCLINVNAPIPTVVQKIHGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+    +   EA       +F +   + I+  +N  FD  + RN            S   
Sbjct: 70  PELLAGEKPPEA----VWPEFLNFIGSNILIAHNAPFDISFIRNELQLLGLSLLNGSQ-- 123

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHV-NAHDAKADV 181
                            +    ++P       S KL ++A     G+      H A  D 
Sbjct: 124 --------------CTLAFSRKKFP----QLKSHKLDNVARHVLGGMPKGIKLHRASGDA 165

Query: 182 YATLALVWLIREKK 195
             T  +   I   +
Sbjct: 166 LLTAMIWQAIENTQ 179


>gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
 gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
          Length = 256

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 59/202 (29%), Gaps = 31/202 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G              +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          EF      F    N   +  +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFE 200
            D      +  ++   +  LF+
Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185


>gi|319956599|ref|YP_004167862.1| exonuclease rnase t and DNA polymerase iii [Nitratifractor
           salsuginis DSM 16511]
 gi|319419003|gb|ADV46113.1| Exonuclease RNase T and DNA polymerase III [Nitratifractor
           salsuginis DSM 16511]
          Length = 294

 Score = 76.4 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 64/198 (32%), Gaps = 20/198 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +I D ET G D A DR  Q A + +D   E +E        P +      +A+ I 
Sbjct: 1   MKT-IILDTETTGTD-AEDRICQLAYLVLDESGEVVEHYNELCTPPLE---IKYDAMAIH 55

Query: 62  GITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            ITP+         E E  RR+ +  + P   ++  N         +             
Sbjct: 56  HITPEMLEGKPACTETEGFRRLRE-LNSPENLLVIQNAPFDLAMLEKEG----------- 103

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            ++N     D   ++R     SP   Q   R       +   L    G E   AHDA  D
Sbjct: 104 -FENRMRLIDTFRLVRKFMPDSPQHGQQYLRYALGLYREEPALIEKLGEEV-RAHDALGD 161

Query: 181 VYATLALVWLIREKKPKL 198
           V     L   +  +    
Sbjct: 162 VIVLKHLYEYLLREHSAE 179


>gi|313843978|ref|YP_004061641.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599363|gb|ADQ91385.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 447

 Score = 76.4 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 35/210 (16%)

Query: 4   HFVIYDYETFGR---------------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
           +++ +D+ET G                +    R    +  R  ++   I++ +       
Sbjct: 6   NYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIR--P 63

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
           D +    E++ I GI+ +KAL +G    E  R   +F   P T  +  +N +FD    ++
Sbjct: 64  DGFQIGEESIAIHGISNEKALSEGRPFPEVYRDFMEFIG-PRTKTLVAHNAQFDTSVLQS 122

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
              R+                + +D +           ++         +     A   G
Sbjct: 123 EMLRHGIP------------LEQIDDLVIRCTLEMYRDRFMGPIKLTKLY-----ADIFG 165

Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKL 198
            E  NAH++ AD  A   +   +  +  + 
Sbjct: 166 EEFDNAHNSLADSIACGRVYPYLLGQTERT 195


>gi|84386996|ref|ZP_00990019.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01]
 gi|84378071|gb|EAP94931.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01]
          Length = 238

 Score = 76.4 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 58/190 (30%), Gaps = 19/190 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++ D ET G D   D       V V +   +I+          +D   + E   I  IT
Sbjct: 51  YIVLDLETTGLDSEQDLILSMGWVDVVKG--RIDLASAKHIYLDNDSQINAETAVINHIT 108

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ    +G    +       FF      II  +    ++ +      R +          
Sbjct: 109 PQML-EEGASIHDAM---LTFFEAAKGKIIVAHACMVEERFISQYLLRCYG--------- 155

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  + ++          ++    +       L       G+   N H+A AD  +T
Sbjct: 156 ----LRAIPLLWLDTLCIEKSMEKAISNHEEVDLTLAGTRERYGLPEYNNHNALADAVST 211

Query: 185 LALVWLIREK 194
             L    +++
Sbjct: 212 AELFLAQQKR 221


>gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810]
          Length = 255

 Score = 76.4 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 66/230 (28%), Gaps = 31/230 (13%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          EF      F    N   +  +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCERLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
            D      +  ++   +  LF+          + +    + +   V  S 
Sbjct: 164 LDAEILADVYLMMTGGQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSH 213


>gi|291616383|ref|YP_003519125.1| DnaQ [Pantoea ananatis LMG 20103]
 gi|291151413|gb|ADD75997.1| DnaQ [Pantoea ananatis LMG 20103]
          Length = 243

 Score = 76.4 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 30/215 (13%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +  GV V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNMIGVHYEGHRIIEIGGVEV-INRRLTG--NNFHMYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L      ++ +     +        +  +N  FD  +    F +      + 
Sbjct: 66  HGIADEFLLDKP-TFSDIADEFLDYIRGAE---LVIHNASFDIGFMDYEFGKLQRGIEKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLAMARRMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            D      +   +   +  L     + R + Q  +
Sbjct: 166 LDAEILAEVFLTMTGGQTSLSFSSEEERARQQQSE 200


>gi|195977857|ref|YP_002123101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974562|gb|ACG62088.1| probable ATP-dependent helicase DinG [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 821

 Score = 76.4 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 29/204 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  + + D E            Q   V ++ + E ++S +                  +T
Sbjct: 6   SQKYAVIDLEATSPGPTAS-IIQVGIVIIEGK-EIVDSYQT---DVNPHEPLSDHIKALT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +     ++ +R I +       C+   +N+ FD        +   YD     
Sbjct: 61  GITDQQLAQAP-DFSQVARTIFELIED---CVFVAHNVTFDANLLAEALFLEGYDLLT-- 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  Y                  + L  L+    +   +AH A AD 
Sbjct: 115 -----PRVDTVELAQIFY-------------PSLEKYSLSHLSEVLDLNLSDAHTAIADA 156

Query: 182 YATLALVWLIREKKPKLFEYLYDY 205
            AT  L   +  K   L     + 
Sbjct: 157 QATANLFIKLLHKIESLPRECLET 180


>gi|300716497|ref|YP_003741300.1| ribonuclease T [Erwinia billingiae Eb661]
 gi|299062333|emb|CAX59450.1| Ribonuclease T [Erwinia billingiae Eb661]
          Length = 215

 Score = 76.4 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 62/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A V  ++D     + + T  F  +P +  +  PEA+   G
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDENGWLEKDETLHFHVEPFEGSILQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  I+  +N  FD  ++     R    
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKLVRKGIKDHGCNRAIMVAHNATFDLNFTNAAADRAGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D            +   +      +F           +   AH 
Sbjct: 140 ------RNPFHPFVTFDTAALSGLVLGQTVLAKACAAAGMAF-----------DSSQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 183 ALYDTVQTADLFCELVNR 200


>gi|117924351|ref|YP_864968.1| exonuclease, RNase T and DNA polymerase III [Magnetococcus sp.
           MC-1]
 gi|117608107|gb|ABK43562.1| Exonuclease, RNase T and DNA polymerase III [Magnetococcus sp.
           MC-1]
          Length = 230

 Score = 76.4 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 18/192 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+  D ET G D           V V      + S    +    +  +    AV + GI
Sbjct: 43  KFLALDLETTGLDPNKSEILSVGFVPV-YNGRVVLSGCAHYLVQPEGAISHASAV-VHGI 100

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T   A   G   +    R+ +        ++  ++   +  + R    R +         
Sbjct: 101 TDDHAEAYGEPLSVVLPRVLKALK---GHVLLAHHCPIELNFIRKACQRLY--------- 148

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +D +          +   S      + +L        +    AHDA  D  A
Sbjct: 149 GEMPLIPAVDTLVIER----QIMDRRSGTYEPGALRLFTARTRYNLPRYAAHDALMDAIA 204

Query: 184 TLALVWLIREKK 195
              L       +
Sbjct: 205 CGELFLAQAVYQ 216


>gi|304395367|ref|ZP_07377250.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB]
 gi|304356661|gb|EFM21025.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB]
          Length = 243

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 30/198 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNMIGVHYEGHRIIEIGAVEV-INRRLTG--NNFHMYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +         ++ +     +        +  +N  FD  +    F +      + 
Sbjct: 66  HGIADEFLADKPA-FSDIADEFLDYIRGAE---LVIHNAPFDIGFMDYEFSKLNRGIEKT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + R ++                    L  L     I++     H A 
Sbjct: 122 E--TFCKITDSLALARRMFPG--------------KRNSLDALCSRYEIDNTKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKP 196
            D      +   +   + 
Sbjct: 166 LDAEILAEVFLTMTGGQT 183


>gi|227503895|ref|ZP_03933944.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
 gi|227199518|gb|EEI79566.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
          Length = 223

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 58/192 (30%), Gaps = 32/192 (16%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET   +    R    A VR+D     ++  E+              A  I GIT +K
Sbjct: 11  FDLETTSVNPKEARIVTSALVRID--GRDVDKREMLA---DPGVEIPEAAAKIHGITTEK 65

Query: 68  ALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           A  +G    E   +    I Q +      +I YN                        + 
Sbjct: 66  ARAEGQPHDEVLAQTVRSIRQAWDD-GLTLIVYNAAYDLSVLRA----------LTGDFT 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +D   + R    +                  L D++   G+   NAH+A +D  A
Sbjct: 115 VDGPVFDPFVIDRVKDKWR------------KGKRTLGDVSAHYGVTLENAHEATSDALA 162

Query: 184 TLALVWLIREKK 195
              + W+   + 
Sbjct: 163 AARIAWMQVRQH 174


>gi|254511557|ref|ZP_05123624.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535268|gb|EEE38256.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 240

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 57/214 (26%), Gaps = 34/214 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V     W  + + E +      +     EA  + GI 
Sbjct: 4   IVLDTETTGFDPESGDRIVEIGAV---ELWNHVATGETYHVYINPERGMPDEAFGVHGIG 60

Query: 65  PQKALRDGVVE---------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           P         E           F++    F        +  +N  FD  +          
Sbjct: 61  PDLLENPRPPEKGEVTLKDKPVFAKVGQGFRDFVGDAQLVIHNASFDMKFLNAELGWMGV 120

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174
                +        D L + R  +  SP                L  L    GI++ N  
Sbjct: 121 PLIPMAQA-----IDTLAIARKRFPGSPA--------------SLDALCRRFGIDNSNRV 161

Query: 175 -HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
            H A  D      +   +   +   F       N
Sbjct: 162 LHGALLDSEILAEVYLELIGGRQPDFGLSTSASN 195


>gi|209883542|ref|YP_002287399.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
 gi|209871738|gb|ACI91534.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
          Length = 230

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 71/250 (28%), Gaps = 30/250 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V     +  + + + +      +     EA  + G++
Sbjct: 4   IVLDTETTGLDALRGDRLVEIGCV---EMFNHMPTGQTYHVYINPERDMPQEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  A  +    +F       I   +N  FD  +      R    +       
Sbjct: 61  TEFLADKPL-FAAVADEFLEFIGDAPLII---HNASFDIGFINMELDRLKRAAIPCERL- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 116 ----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
               +   +   +          R +  + ++       PL     +          +A 
Sbjct: 158 LLAEVYIDLIGARQSSLILAETERTQIHVVEVTRRVREVPLASRITVEEREAHRA-FVAT 216

Query: 243 VAWHPRYKDS 252
           +  HP + + 
Sbjct: 217 LGDHPLWAEF 226


>gi|330505332|ref|YP_004382201.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328919618|gb|AEB60449.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01]
          Length = 233

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              V+ D ET G ++  D+      V +D     I+  E F C           +  I G
Sbjct: 39  QRLVVLDLETTGLNMRRDQVLAIGAVVIDHGA--IDFAEQFECTLHQPDHQASASTLIHG 96

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I P +  R GV  AE    +  F     +  +   +  FD         ++     + S+
Sbjct: 97  IAPSEVAR-GVDPAE---GLLDFMEFVGSSPLLAFHAGFDQRMLARALRQSLGYRLQHSF 152

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +      LL     I                     L D     G++    H+A AD  
Sbjct: 153 FDVAEIAPLLCPQARIRQG-----------------GLDDWVAEFGLQVHQRHNASADAL 195

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
            T  L  ++  K  +          +    +      M
Sbjct: 196 VTAELALMLFSKARRQGIDSLCELERQLASRRRRQHAM 233


>gi|317014965|gb|ADU82401.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           Gambia94/24]
          Length = 287

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V R  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-RGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPK 260


>gi|309807268|ref|ZP_07701238.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166328|gb|EFO68537.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
          Length = 233

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 67  SNQEAAKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPF----- 117

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 118 -DGKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I +K   L     +         L +   +   V           N  LI
Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220


>gi|28898677|ref|NP_798282.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806895|dbj|BAC60166.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 243

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 55/194 (28%), Gaps = 12/194 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +           V       +I   +    K       D ++V I GIT
Sbjct: 53  FVALDFETTGLNPEKHDIITIGLVPF--NLRRIFLRDARHWKVRPQKKLDEDSVIIHGIT 110

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + +       + S  + +     +  II  +  R +  +          +        
Sbjct: 111 HSELIDAP----DLSDILGELLPCLSGKIIVVHYRRIEREFLDQALKARIGEGIE----- 161

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L +   I   S  GI    +     S +L       G+   + H A  D  A 
Sbjct: 162 -FPVLDTLQIEENIQKRSAGGIWNRLKGKRPESLRLAQSRRRYGLPDYSPHHALTDAIAA 220

Query: 185 LALVWLIREKKPKL 198
             L+          
Sbjct: 221 AELLQAQMAHHYND 234


>gi|15643262|ref|NP_228306.1| DNA polymerase III, epsilon subunit, putative [Thermotoga maritima
           MSB8]
 gi|4981007|gb|AAD35581.1|AE001726_15 DNA polymerase III, epsilon subunit, putative [Thermotoga maritima
           MSB8]
          Length = 189

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 5   FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G D  A DR  + A V V +   KI   + F                + GI
Sbjct: 11  FCVVDTETTGTDPFAGDRIVEIAAVPVFKG--KIYRNKAFHSLVNPRIRIPALIQKVHGI 68

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +    +            ++  F       ++ ++N  FD  +   +            +
Sbjct: 69  SNMDIVEAPD-----MDTVYDLFRDYVKGTVLVFHNANFDLTFLDMMAKETGNFPITNPY 123

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D LD+   I+                    L+ L+   GI+    H A  D  
Sbjct: 124 ------IDTLDLSEEIFG---------------RPHSLKWLSERLGIKTTIRHRALPDAL 162

Query: 183 ATLALV 188
            T  + 
Sbjct: 163 VTARVF 168


>gi|194333861|ref|YP_002015721.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM
           271]
 gi|194311679|gb|ACF46074.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM
           271]
          Length = 232

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 21/193 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G D++ D       V V      I+ ++ F      D + D +AV + G+ 
Sbjct: 45  YVVFDTETTGFDLSRDNVISIGAVAVMNGS--IDISDSFEVLIRCDRVGDGDAVSVHGLL 102

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +  G  E E       +       I+   +  FD      I  R+++         
Sbjct: 103 RRDLVG-GCNEREALDGFLNYI---GDSILVAQHAGFDIAMMNAIMRRHYH--------- 149

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADVY 182
                +LL+ +    + +    + P  +    S  ++L  L     I   + H +  D +
Sbjct: 150 ----MELLNDVLDTASLAKRLEKGPYYNLAHKSGEYRLDSLLERYHIRLYDRHTSAGDAF 205

Query: 183 ATLALVWLIREKK 195
            T  L   +    
Sbjct: 206 LTAQLFQRLLYSA 218


>gi|153839656|ref|ZP_01992323.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
 gi|260900787|ref|ZP_05909182.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|149746830|gb|EDM57818.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
 gi|308106848|gb|EFO44388.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 239

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 55/194 (28%), Gaps = 12/194 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +           V       +I   +    K       D ++V I GIT
Sbjct: 49  FVALDFETTGLNPEKHDIITIGLVPF--NLRRIFLRDARHWKVRPQKKLDEDSVIIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + +       + S  + +     +  II  +  R +  +          +        
Sbjct: 107 HSELIDAP----DLSDILGELLPCLSGKIIVVHYRRIEREFLDQALKARIGEGIE----- 157

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L +   I   S  GI    +     S +L       G+   + H A  D  A 
Sbjct: 158 -FPVLDTLQIEENIQKRSAGGIWNRLKGKRPESLRLAQSRRRYGLPDYSPHHALTDAIAA 216

Query: 185 LALVWLIREKKPKL 198
             L+          
Sbjct: 217 AELLQAQMAHHYND 230


>gi|240950342|ref|ZP_04754612.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305]
 gi|240295153|gb|EER45972.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305]
          Length = 253

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 52/197 (26%), Gaps = 30/197 (15%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G +            +   V V            F          + EA+ +
Sbjct: 10  VVLDTETTGMNFNGAPHIGHNIIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         AE       F        +  +N  FD  +  + F        + 
Sbjct: 67  HGITNEFLQDKP-TFAEIVDEFVAFIKGAE---LVIHNAPFDVGFMDHEFSFLANPPPKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R +Y                    L  L    GI++     H A 
Sbjct: 123 --AEMCTVTDSLALARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166

Query: 179 ADVYATLALVWLIREKK 195
            D      +  ++   +
Sbjct: 167 LDAEILADVFLMMTGGQ 183


>gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sp. oral taxon 014 str. F0314]
 gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sp. oral taxon 014 str. F0314]
          Length = 463

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 29/184 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D E+ G +   DR  + A +R +R   K     V                 +TGIT +
Sbjct: 23  VVDLESTGGNFYRDRITEVAVLRFERGAAKRYEWLV-----NPQQPIPKFVADLTGITDE 77

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 V  ++ +  +       +  ++  +N RFD  + R+ F R   D          
Sbjct: 78  AVSGAPV-FSDIAADLLPLL---HGAVVVAHNSRFDYTFLRHEFRRAGMDFAA------- 126

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  ++      P   +            L  +    GI   + H A ADV A   
Sbjct: 127 ---PALCTVQLSRRLYPQFYR----------HNLDSIIERFGIAVESRHRAMADVAALSD 173

Query: 187 LVWL 190
            +  
Sbjct: 174 FLER 177


>gi|260221319|emb|CBA29763.1| hypothetical protein Csp_A13780 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 307

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 63/183 (34%), Gaps = 33/183 (18%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVF 59
              ++ D ET G D A ++  + A +RVD        +   +V+           PE V 
Sbjct: 37  KTILVLDTETTGLDQAKEKIIELALLRVDIDTATGLPVGPVQVYDGLEDPGKAIPPEVVA 96

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           ITGI         + EA  +  +          ++  +N  FD  +              
Sbjct: 97  ITGIQDADVQGQALDEARVAELMQ------GVDVVIAHNAGFDRPFVE------------ 138

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                  SR      +    +F+    +      G +S KL+ LA   G+   +AH A+ 
Sbjct: 139 -------SRLPAFAALPWACSFADLDWK----SLGRSSAKLESLAQELGL-FYDAHRAEM 186

Query: 180 DVY 182
           D +
Sbjct: 187 DCH 189


>gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
 gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
          Length = 256

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 31/203 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          EF      F    N   +  +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPGKRS--------------NLDALCERLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
            D      +  ++   +  LF+ 
Sbjct: 164 LDAEILADVYLMMTGGQTNLFDE 186


>gi|104774090|ref|YP_619070.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423171|emb|CAI97964.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 261

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 31/205 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + ++D ET G+     +  Q   ++V    + +     +          +     +TGI+
Sbjct: 8   YTVFDLETTGK-----KIIQIGALKVRDD-QTVAKFSTY---VNPLEKINDYVSHLTGIS 58

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +     +++ E       F    +  ++G+N + FD     +             +  
Sbjct: 59  NYQTDAAPLID-EVMPDFLDFV--GDDTLVGHNILSFDCNVLADNG-----------YPV 104

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N + D L         +    +     D   + +L  L    GI   N H A +D    
Sbjct: 105 ANPKLDTL-------LLANSYKKRGLFADPIPNVRLSTLKEYYGINI-NFHIAISDCITN 156

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
             +   + +        + D+  K 
Sbjct: 157 NIVYQKLLDGDLAKATEIIDFTPKQ 181


>gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71898480|ref|ZP_00680652.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12]
 gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 239

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 32/203 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G + +  +R  +   V      E ++       F      D   +  A  +T
Sbjct: 8   IVLDTETTGLEWSKGNRIVEIGAV------ELLDRRLSGDKFHRYLKPDVSFESGAQEVT 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +          EFS    +F +  N   +  +N  FD  +      R    S    
Sbjct: 62  GLTMEFLADKP----EFSMIADEFLAYINGAELIIHNAAFDLGFLDYELSRLG--SQYGK 115

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179
             +  S  D L + R  Y    +               L  L    G++  H   H A  
Sbjct: 116 ITDRASVLDTLVMARERYPGQRN--------------SLDALCKRLGVDNAHRQLHGALL 161

Query: 180 DVYATLALVWLIREKKPKLFEYL 202
           D      +   +   + ++   L
Sbjct: 162 DAQILADVYIALTCGQEEIGFAL 184


>gi|322392254|ref|ZP_08065715.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus peroris ATCC 700780]
 gi|321144789|gb|EFX40189.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus peroris ATCC 700780]
          Length = 823

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 68/202 (33%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V+ D E      +  +  Q   V +    E +E               D     +TG
Sbjct: 6   DRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVEQYAT---DVNPHEHLDSHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T ++  +     ++ + +I +        I   +N++FD        +          +
Sbjct: 61  LTDKRLAKAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-------Y 109

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +    R D +++ +  Y                  + L  L    GI    AH A +D  
Sbjct: 110 ELRTPRIDTVELAQVFY-------------PQLEKYNLGILCQELGIPLEQAHTALSDAQ 156

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L   +R+K  +L + L +
Sbjct: 157 ATAELFLCMRQKMFQLPKGLLE 178


>gi|319898105|ref|YP_004136302.1| DNA polymerase iii epsilon subunit [Haemophilus influenzae F3031]
 gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031]
          Length = 256

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 31/202 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          EF      F    N   +  +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFE 200
            D      +  ++   +  LF+
Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185


>gi|254430147|ref|ZP_05043850.1| exonuclease [Cyanobium sp. PCC 7001]
 gi|197624600|gb|EDY37159.1| exonuclease [Cyanobium sp. PCC 7001]
          Length = 292

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 63/233 (27%), Gaps = 39/233 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    +I D ET G D   D   +   +        + S   F     ++      A  I
Sbjct: 61  LPQTLLILDTETTGLDPEQDHCLEVGAILFHVPSRAVLSQISFLLPVRENP-----AEAI 115

Query: 61  TGITPQKAL-----RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            GI           R G+   E            +   +  +N  FD  +          
Sbjct: 116 NGIAAATTRLPQPWRQGLSCFEAMA--------ADADAVLAHNAAFDRQWFGRGE----- 162

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                           L  + A +  S + I+WP+      +  ++DLALA G+    AH
Sbjct: 163 ----------------LPALGAPWICSMEDIRWPAERGLRPNPSVRDLALAYGVPVWAAH 206

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
            A  D      ++    E +  L       R         +            
Sbjct: 207 RALTDCIYLAQVLQRCEELEALLVVAREPRRLFRAQLSYAERHKAKQAGFRWN 259


>gi|315180012|gb|ADT86926.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218]
          Length = 238

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 12/193 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G  V  D       V    +   +   + +  +P      D  ++ I GIT
Sbjct: 48  FVAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRPR--QKLDEHSIVIHGIT 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +       + S    +        ++  +  R +  +      R   +   +   +
Sbjct: 106 HNDIMDAP----DLSDIFEEVLEHLAGRVLVVHYHRIEREFLDRALKRRIGEGIEFPVID 161

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 L+        ++    + P       S +L    +  G+     H A  D  AT
Sbjct: 162 TMEIETLIQKRLTAGLWNRLRGKKPE------SVRLGQSRMRYGLPAYTPHHALTDAIAT 215

Query: 185 LALVWLIREKKPK 197
             L+         
Sbjct: 216 AELLQAQIAHHYS 228


>gi|260364890|ref|ZP_05777461.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260879709|ref|ZP_05892064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260898816|ref|ZP_05907257.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308086617|gb|EFO36312.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308093346|gb|EFO43041.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308111638|gb|EFO49178.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 239

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 55/194 (28%), Gaps = 12/194 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +           V       +I   +    K       D ++V I GIT
Sbjct: 49  FVALDFETTGLNPEKHDIITIGLVPF--NLRRIFLRDARHWKVRPQKKLDEDSVIIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + +       + S  + +     +  II  +  R +  +          +        
Sbjct: 107 HSELIDAP----DLSDILGELLPCLSGKIIVVHYRRIEREFLDQALKARIGEGIE----- 157

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L +   I   S  GI    +     S +L       G+   + H A  D  A 
Sbjct: 158 -FPVLDTLQIEENIQKRSAGGIWNRLKGKRPESLRLAQSRRRYGLPDYSPHHALTDAIAA 216

Query: 185 LALVWLIREKKPKL 198
             L+          
Sbjct: 217 AELLQAQMAHHYND 230


>gi|314055097|ref|YP_004063435.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus
           tauri virus 2]
 gi|313574988|emb|CBI70001.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus
           tauri virus 2]
          Length = 447

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 72/210 (34%), Gaps = 35/210 (16%)

Query: 4   HFVIYDYETFGR---------------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
           +++ +D+ET G                +    R    +  R  ++   I++ +       
Sbjct: 6   NYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIR--P 63

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
           + +    E++ I GI+ +KAL +G    +  +   +F   P T  +  +N +FD    ++
Sbjct: 64  NGFQIGEESIAIHGISNEKALSEGRPFPDVFKDFMEFIG-PRTKTLVAHNAQFDTSVLQS 122

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
              R+                + +D +           ++         +     A   G
Sbjct: 123 EMLRHGIP------------LEQIDDLVIRCTLEMYRDRFMGPIKLTKLY-----ADIFG 165

Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKL 198
            E  NAH++ AD  A   +   +  +  + 
Sbjct: 166 EEFDNAHNSLADSIACGRVYPYLLGQTERT 195


>gi|262283016|ref|ZP_06060783.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
           2_1_36FAA]
 gi|262261268|gb|EEY79967.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
           2_1_36FAA]
          Length = 818

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/417 (13%), Positives = 116/417 (27%), Gaps = 47/417 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + I D E  G   +  +  Q   V +    E  ++ +            +     +TG+
Sbjct: 2   KYAIVDLEATGTG-STAKIIQVGIVIL-EDGEIKQTYQT---DINPHEALEEHIKQLTGL 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+  +     ++ +R I++        +   +N++FD        +   +D       
Sbjct: 57  SDQRLSQAP-DFSQVAREIYELIED---AVFVAHNVKFDANLLAESLFWEGFDLLS---- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R D +++ + ++                  + L  L     I    AH A +D  A
Sbjct: 109 ---PRVDTVELAQVVFPTYE-------------KYGLSSLCELLEIPLEQAHTAISDAMA 152

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L   I+EK   L + L +      L   +  ++   L          R+   L    
Sbjct: 153 TALLFLKIQEKIQSLPKPLLERLLI--LSNSLIYESRLVLEDCFEKMPEGRACDWLDCHG 210

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
            +  +         LS D      L  ++           ++  +  P+        P  
Sbjct: 211 IYLKKQAKVGKERYLSTDFAKNISLLGLEERPEQQKFASLIEEAIKNPL--------PNF 262

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           +       + +         C E + +      L+D+      +      Q     L   
Sbjct: 263 LQAQAGLGKTYGYLLPLLAHCQEKIVVSVPTKLLQDQIATGEGRAIEEVFQVAFHSLKSP 322

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNL--------PFSDRRLPELFFRYRARNFPHTL 412
                       + R    +L                   L E+   +R + F   L
Sbjct: 323 KSYIKLDTFYQSLERLDDNRLLNRCKMQLLVWLTETKTGDLEEIGQAHRYQAFFEEL 379


>gi|319794398|ref|YP_004156038.1| DNA polymerase iii, epsilon subunit [Variovorax paradoxus EPS]
 gi|315596861|gb|ADU37927.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus EPS]
          Length = 240

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 54/199 (27%), Gaps = 28/199 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   ++ D ET G      DR  +   V     + +  +          +     +A+ 
Sbjct: 1   MSRQ-IVLDTETTGLSAENGDRVIELGCV---ELFARKLTGNDLHIYFNPERESHEDALK 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + G+T           A  +  I ++       I   +N  FD  +    F R       
Sbjct: 57  VHGLTTDFLRDKPK-FATLANDIIEYLRGAELII---HNAAFDVGFLNKEFERAGLPP-- 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                          +R   A   D +             L  L    G++  N   H A
Sbjct: 111 ---------------LRTFVAEVTDTLAMAKLVYPGKRNSLDALCDRFGVDRSNRTFHGA 155

Query: 178 KADVYATLALVWLIREKKP 196
           K D      +   +   + 
Sbjct: 156 KLDAQLLADVYINLTRGQD 174


>gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
 gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
 gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1]
 gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
 gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1]
 gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1]
 gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
 gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
 gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
 gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1]
 gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
 gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
          Length = 432

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 30/197 (15%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +I D ET G +    DR  +   V  V R++    +  +       +   D   + + GI
Sbjct: 214 LIMDTETTGFNEAGGDRIVEVGIVELVGRKF----TGNILHVYINPEKHMDDAVIQVHGI 269

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +           AE +++I++F +      +  +N  FD  +    F R    ++     
Sbjct: 270 SNAFVADKPK-FAEVAQQIYEFMAGSE---VIAHNAAFDMKFLNMEFNRAGLSNFA---- 321

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
           N     D L + + +Y    +               L  L    G+   +   H A  D 
Sbjct: 322 NSVKVTDTLALAKQMYPGQKN--------------SLDALVKRLGVGQKDRTFHGALLDS 367

Query: 182 YATLALVWLIREKKPKL 198
                +   +   +  +
Sbjct: 368 EILAEVYLAMTGGQIAM 384


>gi|297243541|ref|ZP_06927472.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis AMD]
 gi|296888292|gb|EFH27033.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis AMD]
          Length = 338

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 23/190 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFC----KPADDYLPDPEA 57
            +FV+ D ET G +  +D+  +   V+ +D + E+ +      C        +     E 
Sbjct: 155 KNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKIEEFQKLININCDSVSNFNKNNFIPNEI 214

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + +TGIT       GV      +    F       ++GYN        S      +  D 
Sbjct: 215 IELTGITSNMLESYGVRLDLALKEFIDFVEKLP--VLGYNVQFD---MSFLNSALSSLDE 269

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                 + N  +D+   ++    F               ++KL+ +     I     H A
Sbjct: 270 RFDHSLSINKIFDISRFVKKEKKFL-------------KNYKLKTVLHEYNIAESVPHRA 316

Query: 178 KADVYATLAL 187
             D   T  L
Sbjct: 317 LLDARLTAHL 326


>gi|77360378|ref|YP_339953.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875289|emb|CAI86510.1| putative DNA polymerase III, epsilon subunit [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 236

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 13/193 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G D   D       V      ++I                  E++ I GIT
Sbjct: 47  FVAMDFETTGLDSEADDIVSVGLVPF--NLQRIYCKHSRHWVVQPRRNLHEESIIIHGIT 104

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +         +F+R I    +  +  ++  +    +  +  N      ++        
Sbjct: 105 HSEVDDAP----DFNRIIEPLLAALSGKVVVVHYAAIERPFLNNALLLRLHEGIE----- 155

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D +D+ +         I          S +L D      +   N H+A  D  AT
Sbjct: 156 -FALVDTMDIEKRALTARQGLIGRLFNSKI-GSLRLNDCRKRYSLPAYNNHNALTDALAT 213

Query: 185 LALVWLIREKKPK 197
             L+        +
Sbjct: 214 AELLQAQLSHHYR 226


>gi|90421821|ref|YP_530191.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB18]
 gi|90103835|gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 231

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +   + ++ + + F      +     EA  + G++
Sbjct: 4   IVLDTETTGLDPLRGDRLVEIGCVEI---FNRMPTGQTFHRYINPERDMPQEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  AE      +F +      +  +N  FD  +      +            
Sbjct: 61  AEFLSTKPL-FAEVVDEFLEFIAE---APLVIHNASFDIGFINAELGKIARPPIPR---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|330505789|ref|YP_004382658.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328920075|gb|AEB60906.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
          Length = 235

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 51/199 (25%), Gaps = 18/199 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G D           V +D   ++I   E  +           E+V    IT
Sbjct: 45  LVALDVETTGLDPHQHAIVSLGLVPMD--LQRIRCAEARYWVVKPTSELSAESVTFHHIT 102

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         +  + +        ++  +  + +         RNF D        
Sbjct: 103 HSDIRHAPR----LASVLDELLEALAGKVVVAHYRKIE---------RNFLDQALRLHLG 149

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRD---DGATSFKLQDLALANGIEHVNAHDAKADV 181
               + ++D M       P                S +L D     G+   +AH A  D 
Sbjct: 150 EGLMFPIIDTMELEARLHPRRSISWWDRLRGRQPLSIRLADSRERYGLPPYSAHHALTDA 209

Query: 182 YATLALVWLIREKKPKLFE 200
            A   L+            
Sbjct: 210 LACGELLQAQAATHYPAHT 228


>gi|289705138|ref|ZP_06501542.1| exonuclease [Micrococcus luteus SK58]
 gi|289558166|gb|EFD51453.1| exonuclease [Micrococcus luteus SK58]
          Length = 228

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 52/192 (27%), Gaps = 22/192 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET GRD           V VD       S E              EA  + G+T ++
Sbjct: 11  FDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWL---VDPGVPIPAEAAEVHGVTTER 67

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G+  A+    I +           +   N  +D         R+            
Sbjct: 68  AQAEGMPAAQGVAEITETLRDLFAAGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVID 127

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D                             L  ++   G+   NAH + AD  A +
Sbjct: 128 PFVLDKQ-----------------VDRFRKGKRTLSAVSEHYGVTLENAHTSAADALAAV 170

Query: 186 ALVWLIREKKPK 197
            +   +  +  +
Sbjct: 171 QVADALAAQYEQ 182


>gi|289423581|ref|ZP_06425382.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289156083|gb|EFD04747.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 174

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 28/194 (14%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + +++ D ET G D        +     + +     + T  +        +       +
Sbjct: 7   KDEYIVVDLETTGLDPLQGHEIIEIGVTEIKKG----DITLNYSRLIKPKGIISSFITNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T I+ +    +  +E E   +  ++       ++  +N +FD  +      +   +  + 
Sbjct: 63  THISNEMVEGEKTLE-EVLPKFREYI---GDSVLIAHNAKFDIPFLNYYLEKMGLEPIKN 118

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      L++++    +                  L       GI++V AH A AD
Sbjct: 119 -------YICTLEMLKMNKMY------------PLKKKSLSAACDFYGIKNVEAHRAYAD 159

Query: 181 VYATLALVWLIREK 194
            +AT  L   IR++
Sbjct: 160 THATALLFLKIRDE 173


>gi|227548036|ref|ZP_03978085.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079890|gb|EEI17853.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 223

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 56/190 (29%), Gaps = 30/190 (15%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET   +    R    A VR+D     + STE              EA  + GIT +K
Sbjct: 12  FDLETTSANPGEARIVTSALVRID--GSSVTSTEELA---DPGVEIPEEAAAVHGITTEK 66

Query: 68  ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A  +G    E                  ++ +N         R             ++  
Sbjct: 67  ARAEGRPHDEVLAETVAEIRKCWEDGLTLVVFNAPYDLTVLRR----------LTGTFTV 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               +D L + RA   +                  L  L+   G+   NAH+A +D  A 
Sbjct: 117 DGPVFDPLVIDRAKDRYR------------KGKRNLGALSEIYGVRLDNAHEATSDATAA 164

Query: 185 LALVWLIREK 194
             + W     
Sbjct: 165 ARIAWKQVRM 174


>gi|309809881|ref|ZP_07703731.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308169833|gb|EFO71876.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 233

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 67  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I EK   L     +         L +   +   V           N  LI
Sbjct: 164 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220


>gi|238897890|ref|YP_002923569.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465647|gb|ACQ67421.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 241

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V V         T   + +P      DPEA  I
Sbjct: 5   IVLDTETTGLNKTGPHYEGHNIIEIGAVEV-INRRLTGKTFHTYVRPNRQV--DPEAYQI 61

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         +E   +  +F       I   +N  FD  +     +     +   
Sbjct: 62  HGISDEFLSDKPR-FSEIFSQFFEFIRGSELII---HNAAFDIGFMDYE-FSALQQNIPK 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +     +  D L + R ++                    L  L     I++     H A 
Sbjct: 117 TNTF-CTVTDTLALARRLFPG--------------KRNSLDALCDRYQIDNSKRTLHGAL 161

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +   +   +   
Sbjct: 162 LDAQILAEVYLAMTGGQTLF 181


>gi|323464450|gb|ADX76603.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus pseudintermedius ED99]
          Length = 900

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 27/184 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     D   Q     V    + I+           D         +T I 
Sbjct: 7   YAVVDLETTGNQADYDEIIQIGITFVRNN-QIIDHYHS---MIKTDLTIPTFIQALTSIE 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   +      E + +I+        CI   +N+ FD  + +  F +            
Sbjct: 63  EEMLNQAPY-FKEVAHKIYSKIKD---CIFVAHNVNFDLNFLKRSFKKCHIH-------- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                  +        S++L +LA + GI    AH A  D Y T
Sbjct: 111 -----------YQPKKVIDTLELFKIAFPTEKSYQLTELAESLGIPLTQAHRADEDAYTT 159

Query: 185 LALV 188
             ++
Sbjct: 160 ARIM 163


>gi|62317520|ref|YP_223373.1| exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|83269503|ref|YP_418794.1| DNA polymerase III subunit epsilon:exonuclease [Brucella melitensis
           biovar Abortus 2308]
 gi|148557905|ref|YP_001257609.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189022776|ref|YP_001932517.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|225686408|ref|YP_002734380.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella melitensis ATCC 23457]
 gi|254691019|ref|ZP_05154273.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 6 str. 870]
 gi|254695674|ref|ZP_05157502.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698803|ref|ZP_05160631.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705882|ref|ZP_05167710.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
           M163/99/10]
 gi|254711110|ref|ZP_05172921.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis B2/94]
 gi|254712430|ref|ZP_05174241.1| DNA polymerase III, epsilon chain [Brucella ceti M644/93/1]
 gi|254715502|ref|ZP_05177313.1| DNA polymerase III, epsilon chain [Brucella ceti M13/05/1]
 gi|254732250|ref|ZP_05190828.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 4 str. 292]
 gi|256015402|ref|YP_003105411.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|256029491|ref|ZP_05443105.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
           M292/94/1]
 gi|256111454|ref|ZP_05452474.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157686|ref|ZP_05455604.1| DNA polymerase III, epsilon chain [Brucella ceti M490/95/1]
 gi|256253341|ref|ZP_05458877.1| DNA polymerase III, epsilon chain [Brucella ceti B1/94]
 gi|256256204|ref|ZP_05461740.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 9 str. C68]
 gi|256262453|ref|ZP_05464985.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260167417|ref|ZP_05754228.1| DNA polymerase III, epsilon chain [Brucella sp. F5/99]
 gi|260544758|ref|ZP_05820579.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260564713|ref|ZP_05835198.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|261756828|ref|ZP_06000537.1| DNA polymerase III [Brucella sp. F5/99]
 gi|62197713|gb|AAX76012.1| exonuclease, hypothetical [Brucella abortus bv. 1 str. 9-941]
 gi|82939777|emb|CAJ12783.1| DNA polymerase III, epsilon subunit:Exonuclease [Brucella
           melitensis biovar Abortus 2308]
 gi|148369190|gb|ABQ62062.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021350|gb|ACD74071.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|225642513|gb|ACO02426.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella melitensis ATCC 23457]
 gi|255998062|gb|ACU49749.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|260098029|gb|EEW81903.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260152356|gb|EEW87449.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|261736812|gb|EEY24808.1| DNA polymerase III [Brucella sp. F5/99]
 gi|263092188|gb|EEZ16485.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410781|gb|ADZ67845.1| DNA polymerase III, epsilon subunit [Brucella melitensis M28]
          Length = 224

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 13  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 69  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                  +  +D  R ++                 S KL       G     + H A  D
Sbjct: 123 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 165

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    +     
Sbjct: 166 AYLTAGLYLHQQGVAKP 182


>gi|16262589|ref|NP_435382.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021]
 gi|307319072|ref|ZP_07598502.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti
           AK83]
 gi|14523204|gb|AAK64794.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306895179|gb|EFN25935.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti
           AK83]
          Length = 325

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 61/218 (27%), Gaps = 33/218 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           VI D ET G D       +   V    + + E  +   V+           P+   +TGI
Sbjct: 71  VILDTETTGLDARKCEIIEIGLVSFTYNEEGEIGDVVAVYGGLQQPTIAIPPDITRLTGI 130

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +  A     +          +I  +N  FD  +                  
Sbjct: 131 TDAMVAGQSIDIAAVQAIV------GPADLIIAHNAGFDRPFCEAFSD------------ 172

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +    A++    +      G    KL  L   +G  H   H A  D +A
Sbjct: 173 -----------VFVRKAWACSVSEIDWSGRGFEGTKLGYLIGQSGYFHDG-HRAVDDCFA 220

Query: 184 TLALVWLIREKKP-KLFEYLYDYRNKNQLRKLIDIQNM 220
            L ++           F  LY    ++++R   +    
Sbjct: 221 LLGVLEQSSGGAALPPFAELYKASQRSRVRIFAENAPF 258


>gi|298372076|ref|ZP_06982066.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274980|gb|EFI16531.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058]
          Length = 252

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 73/255 (28%), Gaps = 29/255 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N  V +D ET G +V+ DR  +   ++V+    K         K   +     ++  I
Sbjct: 5   LKNPIVFFDLETTGINVSTDRIVELTYLKVEPNGNKT----SKTIKINPEMHIPEQSSAI 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  Q          + +  + +        + G+N++ FD       F R   D    
Sbjct: 61  HGIYDQDVADCP-TFRQIAANLAKDIE--GCDLAGFNSVNFDIPLLVEEFLRVGVDIDLK 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +DVM   Y                                 NAH ++AD
Sbjct: 118 KRK-------FVDVMVIFY-------------KKEPRNLAAAYKFYCDKTLENAHSSEAD 157

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM-FGASRSNTAL 239
             AT  ++     K P L   +      +   K  D              F   +    L
Sbjct: 158 TLATFEILEEQLNKYPDLENSVDFLSEFSSHNKHADYAGRIIYDSRKREVFNFGKYKGML 217

Query: 240 IAPVA-WHPRYKDSV 253
           +  V    P Y   +
Sbjct: 218 VQDVFRQDPNYYQWM 232


>gi|58617240|ref|YP_196439.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Gardel]
 gi|58416852|emb|CAI27965.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Gardel]
          Length = 242

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 19/139 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G D    DR  +   +      E I+       F      +      A  I 
Sbjct: 10  IVLDTETTGLDADGGDRIIEMGCI------ELIDRVFTGKVFHEYINPERDIPYYATKIH 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT           +E + +   F       ++  +N  FD  + +        D  + S
Sbjct: 64  GITVDMLKDKPK-FSEIADKFLDFI---GNSVLVIHNAVFDIKFIKME-----LDKIQKS 114

Query: 122 WDNGNSRWDLLDVMRAIYA 140
           +++     D L + R  + 
Sbjct: 115 YNSDFQVVDTLILARKKFP 133


>gi|319649890|ref|ZP_08004041.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2]
 gi|317398470|gb|EFV79157.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2]
          Length = 242

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 61/202 (30%), Gaps = 27/202 (13%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  ++D ET G      D+      V++ +     +S          +     E   +TG
Sbjct: 57  NVAVFDIETTGFYPDKGDQIISIGAVKIIKGKVSEDSFYSLARF---EKPLSNEIKELTG 113

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ++     +     +E      +F        +  ++   +  + ++  ++ F        
Sbjct: 114 LSEADLEKAP-PLSEVLISFLEFVKD---MPLVAHHANHEKSFMQHSCWKLFR------- 162

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                ++ +LD          +   W          +L+DL     I   + H A  D  
Sbjct: 163 --TPFKYRILDTSFLYRIADHNKSFW----------RLEDLCEFYSIPVKDRHHALGDAK 210

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
            T  L   + E+  KL      
Sbjct: 211 LTALLWCRLIEEVHKLGCSNLK 232


>gi|224373045|ref|YP_002607417.1| exonuclease [Nautilia profundicola AmH]
 gi|223588855|gb|ACM92591.1| exonuclease [Nautilia profundicola AmH]
          Length = 203

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 50/191 (26%), Gaps = 20/191 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G D   D       V V      +      F KP+ +     E++ I  ITP
Sbjct: 32  VVVDTETTGLDRKKDEIISIGAVIVKNNRVLLSRKFHIFVKPSKEL--SIESIKIHKITP 89

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                    E    +    F    N  ++GY         ++               +  
Sbjct: 90  DMLKNALEPET-AIKMFLNFIK--NRPLVGYYLEFDVAMLNKLTKRYLGIKLPNRQIEVS 146

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +D                +           +   +     +  +  HDA  D   T 
Sbjct: 147 AVYYD---------------KKIGLIPQKHIDLRFDSIMKDLNLPIIGKHDALNDAIMTA 191

Query: 186 ALVWLIREKKP 196
            +   ++  K 
Sbjct: 192 LMYIKLQNCKK 202


>gi|146337369|ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. ORS278]
 gi|146190175|emb|CAL74167.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Bradyrhizobium sp. ORS278]
          Length = 232

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 52/189 (27%), Gaps = 35/189 (18%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61
           ++ D ET G D    DR  +   V      E I      +VF            EA  + 
Sbjct: 4   IVLDTETTGLDALRGDRLVEIGCV------EIINRMPTGQVFHRYINPQRDMPAEAFAVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ +      +        +  F +      +  +N  FD  +      R    +    
Sbjct: 58  GLSTEFLSDKPLFH----EVVEDFLAFIGDAPLVIHNASFDIGFINAELDRVKRAAIPRE 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                   D L + R  +                 S +L DL     I++     H A  
Sbjct: 114 RL-----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALL 154

Query: 180 DVYATLALV 188
           D      + 
Sbjct: 155 DAELLAEVY 163


>gi|86146863|ref|ZP_01065182.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|85835315|gb|EAQ53454.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
          Length = 255

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 57/203 (28%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              V+ D ET G +          R  +   V +            F      D     E
Sbjct: 21  KRIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEI-INRRLTGRH--FHVYIKPDRAIQEE 77

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +  +     E +   +  +F        +  +N  FD  +    F +   +
Sbjct: 78  AIGVHGITDEFLIDKP--EYQDIHK--EFLDFIKGAELVAHNAPFDTGFMDYEFEK--LN 131

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                 D+     D L + + I+                    L  L    GI+  H   
Sbjct: 132 PAIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDILCDRYGIDNSHRTL 177

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 178 HGALLDAEILADVYLLMTGGQTS 200


>gi|86145828|ref|ZP_01064156.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222]
 gi|85836283|gb|EAQ54413.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222]
          Length = 238

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 61/201 (30%), Gaps = 19/201 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++ D ET G D   D       V V +   +I+          +D   + E   I  IT
Sbjct: 51  YIVLDLETTGLDSEQDLILSMGWVDVVKG--RIDLASAKHIYLDNDSQINAETAVINHIT 108

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ    +G    +       FF      II  +    ++ +      R +          
Sbjct: 109 PQML-EEGASIHDAM---LTFFEAAKGKIIVAHACVVEEKFISQYLLRCYG--------- 155

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L ++          ++    +       L       G+   N+H+A AD  +T
Sbjct: 156 ----LRQLPLLWLDTLCIEKSMEKAISNHEEVDLTLAGTRDRYGLPEYNSHNALADAVST 211

Query: 185 LALVWLIREKKPKLFEYLYDY 205
             L    +++     E    +
Sbjct: 212 AELFLAQQKRVVPNDEVTLSF 232


>gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846]
          Length = 255

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 31/203 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G              +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          EF      F    N   +  +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
            D      +  ++   +  LF+ 
Sbjct: 164 LDAEILADVYLMMTGGQTNLFDE 186


>gi|294670031|ref|ZP_06734988.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308152|gb|EFE49395.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 244

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 57/194 (29%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +FAG+      ++  +          D     EA  + GIT
Sbjct: 7   IILDTETTGLYADRGDRMLEFAGI---EMKKRQLTMNNLHLYIHPDRDIPEEAAAVHGIT 63

Query: 65  PQKALRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            ++       + E   R+I  F       I   +N RFD  +    F R    S      
Sbjct: 64  LEQLEERNAPKFEQVGRQIADFLRGAELII---HNARFDVGFLNMEFARMGLPSIEE--- 117

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                 D L + R  +                    L  L     ++      H A  D 
Sbjct: 118 LDCEITDTLAMAREKFPGQKA--------------SLDALCSRLDVDRSKRVLHGALIDC 163

Query: 182 YATLALVWLIREKK 195
                +   +  ++
Sbjct: 164 ELLAEVYLAMTREQ 177


>gi|208435412|ref|YP_002267078.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
 gi|208433341|gb|ACI28212.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
          Length = 264

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V R  E I   E     K   DY+       +TGI
Sbjct: 50  FSFIDLETTGSCPIKHEILEIGAVQV-RGGEIINRFETLVKVKSVPDYI-----AELTGI 103

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 104 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 156

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 157 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 199

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 200 SYKLFEICLLNLPSYIKTTMDLIDFSKCADTLIKRPPR 237


>gi|152992669|ref|YP_001358390.1| exonuclease [Sulfurovum sp. NBC37-1]
 gi|151424530|dbj|BAF72033.1| exonuclease [Sulfurovum sp. NBC37-1]
          Length = 244

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 86/271 (31%), Gaps = 33/271 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V++D ET G +   DR  Q   + V  + ++IE  +              EA+ + 
Sbjct: 1   MAKYVLFDTETTG-NQEADRIIQIGAMIVHSK-DEIEVFDELCSTQVP---ISIEAMEVH 55

Query: 62  GITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            ITP          E  F++R+ +  +  N   +  +NI FD        + N       
Sbjct: 56  NITPDVIAGKPTYSETAFAKRVQELNTTEN--YLIAHNISFDLGMLEKEGFVN------- 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPD--GIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                   + L+D +R      PD    +          +K +          + AHDA 
Sbjct: 107 -------HYTLIDTVRCTKHLLPDSPYHRLQYLRYSLGLYKTEAQEAQKLGITIKAHDAI 159

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
            DV     L+  +     + F           +  +  +  +T    +   F   +    
Sbjct: 160 GDVLVMKLLLSKLVVLTQEHFP---------GVNPMQKMAELTQTPVLMKTFKFGKYKDR 210

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLD 269
            I  +A         +  NL  D  +   LD
Sbjct: 211 DIEEIAREDMGYLRWMRSNLDLDEDMKFTLD 241


>gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           leachii PG50]
 gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           leachii PG50]
          Length = 1480

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/413 (13%), Positives = 112/413 (27%), Gaps = 47/413 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G    LD   +F  +  + +  + +  ++                 +T I  
Sbjct: 434 VFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDIL---IKPKAKLKDFTKKLTNINE 490

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +       +E  F ++I+Q        I+  +N  FD  +  +   +  Y     +    
Sbjct: 491 EMLENKPGIEVAF-KQINQIIKD---AILVAHNANFDYTFLSHWSQKLGYGKLENT---- 542

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183
               D L + R IY                 S +L  LA    I +    AH    D   
Sbjct: 543 --IIDTLTISRIIY-------------PELKSHRLGSLAKRVNISYDPSVAHRGDYDADI 587

Query: 184 TLALVWLIREKKPKLFEYLY-----DYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNT 237
              +   + ++  K  +             N +  L   +N     ++     A  +   
Sbjct: 588 LADIYERMLDETRKKTKITIDSDWDKINPLNNIDNLNYHKNKGFHTNILVKNQAGLKELY 647

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL---DSVQLAKRLFTSHDELKGLVPVPIKE 294
            L+        Y    I  +   +++   +L    S   ++    +       +   I  
Sbjct: 648 KLVTKSHTTNFYSSPKIFKSDLIEVKKNNNLLFGSSCVNSEIFELARTSTLENLKQAISF 707

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
               +   +       +          +     + + +Q+  L       +         
Sbjct: 708 YDYIEIQPISVYKNLLQNDSLDLDQLKQVITNIINIAKQENKLIIASSDCHYTNPELKQI 767

Query: 355 DVDSQLYDG---------FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPE 398
                   G          F +  +   D+ LRT  E L   +    D  L  
Sbjct: 768 REVYINAKGLGGIRHPLFDFNNKVKDYPDQYLRTTNEMLEEFSW-LEDENLIY 819


>gi|212709216|ref|ZP_03317344.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
           30120]
 gi|212688128|gb|EEB47656.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
           30120]
          Length = 253

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 59/218 (27%), Gaps = 30/218 (13%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAFEV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +      V  A+ +    +F        +  +N  FD  +    F +        
Sbjct: 66  HGISDEFLQDKPV-FADIADEFIEFIRGAE---LVIHNAPFDIGFMDYEFRKLNRGIPPT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R I+                    L  L     I++     H A 
Sbjct: 122 --AEFCTITDSLVLARKIFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
            D      +   +   +  L   +    +  +    I 
Sbjct: 166 LDAEILSDVYLAMTGGQTSLAFSMESESSNTEQANAIQ 203


>gi|313672733|ref|YP_004050844.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939489|gb|ADR18681.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 195

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F++ D ET G       +  + A +++++  +       F+            A  +  I
Sbjct: 11  FIVIDLETTGISPYKGAKIVEIAALKIEKGLKINPK-NSFYSLVNPLIPIPYSAYRVHKI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +       +E    + + +F    +T  I   NI FD  + +       +        
Sbjct: 70  SNEIVKDYPTIE----KVLPKFLEFLDTPFIIGQNISFDYSFIKY------FSDLYNFRL 119

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE----HVNAHDAKA 179
                 D +++ + I                   + L +L    GIE    +   H A  
Sbjct: 120 KEFIIIDTINIAKKIA-------------PNLKRYNLDNLITYFGIENILGNGKRHRADF 166

Query: 180 DVYATLALV 188
           D+YAT  + 
Sbjct: 167 DIYATALIF 175


>gi|68500002|gb|AAY97945.1| hypothetical protein [Plasmid pMCBF1]
 gi|133711762|gb|ABO36582.1| hypothetical protein [uncultured bacterium pMCBF6]
          Length = 291

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 52/187 (27%), Gaps = 24/187 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G D  + +  + A V  D   + +        +         +A  + GI+ 
Sbjct: 121 VVLDTETTGLD-GVAQVIEIAIV--DWNGKTL-----INQRIRPTVAISVDAQRVHGISM 172

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      + +  + +        ++ YN         +        D   W     
Sbjct: 173 DDLADCPA-WTDIAPEVRRVLE--GRPVVIYNASYDQRMLYQTAKSTAGLDDLDW----- 224

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYAT 184
               D    M           +         +  L +  +  GIE    AH A  D   T
Sbjct: 225 IINLDTHCAMTMAAREYGATNK-------YGTISLANAVIQAGIEWQGAAHSALGDALTT 277

Query: 185 LALVWLI 191
           LAL   +
Sbjct: 278 LALARKM 284


>gi|83313644|ref|YP_423908.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82948485|dbj|BAE53349.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 257

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 29/189 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D  +  R  +   V +        S    +C P  D     EA  + G++
Sbjct: 31  IVLDTETTGFDPLSGHRLVEIGCVELFNHL-PTGSVFHRYCNPERDM--PEEAFKVHGLS 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    F+  +  F        +  +N  FD  +      R  +     S   
Sbjct: 88  ADFLSDKPL----FAEIVADFLEFIGDVPLVIHNAEFDMRFINAELTRLGFPPLPMSRS- 142

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D + + R  +  +                 L  L     I+  H   H A  D  
Sbjct: 143 ----IDTVMMARKRFPGAQA--------------NLDALCRRFEIDNTHRTKHGALLDSE 184

Query: 183 ATLALVWLI 191
               +   +
Sbjct: 185 LLAEVYLQL 193


>gi|257791384|ref|YP_003181990.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
 gi|257475281|gb|ACV55601.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
          Length = 367

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 55/191 (28%), Gaps = 28/191 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  +D ET   +   DR      V  D+    +E           +   D   V I GI 
Sbjct: 3   YTFFDVET--PNRRNDRICSIGAVVTDQDGTVVEKKSYL---VNPESSFDDINVRIHGIA 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P            +   +  FF V     +  +N RFD              S + S+  
Sbjct: 58  PVDVRNAKTFPELWYDSLSAFFPVDG---VVAHNARFDLSVLTKTLVSYDIPSPKMSY-- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                +    + D     KL  +  A GIE    H A++D  A 
Sbjct: 113 ------------------ACTLDMSKKIDFIGGGKLPHVCEALGIELERHHQAESDATAC 154

Query: 185 LALVWLIREKK 195
           + + W +    
Sbjct: 155 MRVFWTLVGMA 165


>gi|163751907|ref|ZP_02159120.1| exonuclease [Shewanella benthica KT99]
 gi|161328190|gb|EDP99355.1| exonuclease [Shewanella benthica KT99]
          Length = 227

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 20/183 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +  +  D E  G +   D+      + ++     ++  E    K         ++  I 
Sbjct: 39  QSKLIALDLEMTGLNPNHDQILSIGLIPIENNLLLLDKAEQKLIKVDGGV---GQSAAIH 95

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI  +          +    I  F       ++  ++   D  + +N   +   +     
Sbjct: 96  GILDKHLQDA----IDIEEAISWFLEKTLGKVLVAHHAPLDINFLQNAMSKTVGEPV--- 148

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L V R       D ++         S +L       G+    AH+A  D 
Sbjct: 149 ---KLCAIDTLAVERRRLLRKHDVLK-------EGSLRLGACRTRYGLPVYAAHNALVDA 198

Query: 182 YAT 184
            A 
Sbjct: 199 LAC 201


>gi|260101291|ref|ZP_05751528.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075]
 gi|260084876|gb|EEW68996.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075]
          Length = 929

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 28/205 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++                  V +
Sbjct: 7   KDTFAVVDLETTGTQREKGHHIIQFGCAII-KNMKVVKTYS---FMINPHREIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  +         + ++ +I +        +   +N+ FD  +      ++ Y++   
Sbjct: 63  TGIHNEDVQGKD-DFSVYAPKIIEILK---GTVFVAHNVDFDLPFLNYELVQHGYEAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL     I+H+N H A +D
Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTAQLKIKHLNPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205
            Y T  L+  I  K   L +   + 
Sbjct: 160 AYGTAVLLIKIIHKLESLPQATLNT 184


>gi|229845439|ref|ZP_04465569.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
 gi|229811635|gb|EEP47334.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
          Length = 256

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 31/202 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          E ++    + +     I   +N  FD  +    F          
Sbjct: 65  HGITDEMLADKPE-FKEIAQDFLDYINGAELLI---HNAPFDVGFMDYEF------CKLN 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                +    + D ++                       L  L    GI++     H A 
Sbjct: 115 LNVKTDDICLVTDTLQMARQMY-----------PGKRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFE 200
            D      +  ++   +  LF+
Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185


>gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
 gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
 gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
 gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
          Length = 256

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 31/202 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          EF      F    N   +  +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKP----EFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFE 200
            D      +  ++   +  LF+
Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185


>gi|188578361|ref|YP_001915290.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522813|gb|ACD60758.1| DNA polymerase III, epsilon subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 244

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V      E+  S   F      D   +P A  +TG+T
Sbjct: 4   IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F   + +F +  +   +  +N  FD  +  N         +      
Sbjct: 61  LEFLADKPL----FGDVVEEFLAYIDGAELIIHNAAFDLGFLDNEL--ALLGDHYGRIVE 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L + R  Y    +               L  L    G++  H   H A  D  
Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILADVYIALTSGQEEI 176


>gi|148251776|ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. BTAi1]
 gi|146403949|gb|ABQ32455.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. BTAi1]
          Length = 232

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 35/189 (18%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61
           ++ D ET G D    DR  +   V      E I      +VF      +     EA  + 
Sbjct: 4   IVLDTETTGLDALRGDRLVEIGCV------EIINRMPTGQVFHRYINPERDMPAEAFAVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ +      +   E      +F        +  +N  FD  +      R    +    
Sbjct: 58  GLSSEFLADKPLFH-EIVEEFLEFI---GDAPLVIHNASFDIGFINAELDRVKRAAIPRE 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                   D L + R  +                 S +L DL     I++     H A  
Sbjct: 114 RL-----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALL 154

Query: 180 DVYATLALV 188
           D      + 
Sbjct: 155 DAELLAEVY 163


>gi|146309112|ref|YP_001189577.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
 gi|145577313|gb|ABP86845.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
          Length = 233

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 56/208 (26%), Gaps = 23/208 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV+ D ET G ++  D+      V +D     +           D       +  I 
Sbjct: 38  QQRFVVLDLETTGLNMRRDQVLAIGAVVIDNGAIDLAQQFERTLHLPDHQ--ASASTLIH 95

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P +  R           +  F     +  +   +  FD         ++     + S
Sbjct: 96  GIAPSEVARGVEP----VEALLGFMEFVGSSPVLAFHAEFDQRMLARALKQHLGYRLQHS 151

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + +      LL     I                     L +     G++    H+A AD 
Sbjct: 152 FFDVAEIAPLLCPQSRIRQG-----------------GLDEWVAEFGLQVHQRHNASADA 194

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN 209
             T  L  ++  K  +          + 
Sbjct: 195 LVTAELALMLFSKARRQGIDSLCELERQ 222


>gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae
           86-028NP]
 gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP]
          Length = 255

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 66/230 (28%), Gaps = 31/230 (13%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          EF      F    N   +  +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYLG--------------KRNNLDALCERLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
            D      +  ++   +  LF+          + +    + +   V  S 
Sbjct: 164 LDAEILADVYLMMTGGQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSH 213


>gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
 gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
          Length = 894

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 75/226 (33%), Gaps = 43/226 (19%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V++D ET G DV  D   + + +++ ++ + +      +       L            
Sbjct: 512 IVVFDTETTGLDVFTDDIIEISAIKI-KEGKIVGEPLDLYIYTDKPIL------------ 558

Query: 65  PQKALRDGVVEAEFS-------------RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            QK         E                 +++F    +   +  +NI +D +   N   
Sbjct: 559 -QKLGTKENPLYEIYHKKLASGELLKANDALNKFIEFVDNSTLIGHNINYDYHILDNCLK 617

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R   D                      Y +          +    S+KL+ L     +E 
Sbjct: 618 RYANDCMDNH----------------SYKYFDSLKLIRLLEPSLRSYKLEYLLERFQLEG 661

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
           +N+H +  DV AT++L+    +K   + E   D+ N  Q+ K+ + 
Sbjct: 662 INSHQSIDDVKATISLINYCADKAQLVVEKQMDFLNHKQVFKVANK 707


>gi|150020376|ref|YP_001305730.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis
           BI429]
 gi|149792897|gb|ABR30345.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis
           BI429]
          Length = 184

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 28/191 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G +    DR  + A V +  + + IES  ++             +  I GI
Sbjct: 7   YCVLDTETTGLNPYFGDRIIEVAIVPI-YKGKIIESW-IYHSLVNPHIKISALSEKIHGI 64

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +  +      +E +    I  +    +T  + +N      +          +        
Sbjct: 65  SNSEIESAPGLE-KILDNIRAY--AKDTIFVMHNARMDLSFLDIATKEVGQFPINVR--- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++   +Y                    L+ L           H A  D   
Sbjct: 119 ----YIDTLEISLILYG---------------KKRSLESLVREFKFGEKVPHRALGDAIL 159

Query: 184 TLALVWLIREK 194
           T  +   + EK
Sbjct: 160 TAKVFLKLSEK 170


>gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735]
 gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735]
          Length = 906

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 81/224 (36%), Gaps = 19/224 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
               I+D ET G DV  D   Q A V+V        S      + +D  +P+     +  
Sbjct: 505 ETITIFDTETTGLDVFHDDILQIAAVKVRNGAVVPGSALSLHLE-SDHEIPEMLGDIVNP 563

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  ++  +  +   E  +R   +     T ++G+N   +D +   N   R   ++     
Sbjct: 564 IIEERRNQTLLPRREALQRFVDY--ARGTVLLGHNA-DYDIHILANNLQREMPET----- 615

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D  D +  I               G   +KL+ L     +E  N+H A ADV 
Sbjct: 616 ALPNELSDYFDSLHLIRLLR----------PGLRQYKLKYLLEVLHLEGENSHLADADVN 665

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
           AT +LV    +K  ++      +    ++++ I       L H 
Sbjct: 666 ATQSLVVFCYDKAKEIVGEQQAFIRHKRVQERIMTLRNNYLPHY 709


>gi|223040436|ref|ZP_03610710.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           rectus RM3267]
 gi|222878286|gb|EEF13393.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           rectus RM3267]
          Length = 289

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 31/217 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G  +   +  +   +++ +  E I   E F   P   Y+P+     +TGIT
Sbjct: 73  FCVVDIETSGG-INSGQIIEIGALKL-QNGEIIGKFETFVHAP---YVPE-NISELTGIT 126

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       +      +   F       +   +N+RFD  +         Y         
Sbjct: 127 AEHLKNAPNLAF-VMEKFKVFL---GQSVFVAHNVRFDYGFIGATLEALGYGELLNH--- 179

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   +D+ R   A              +  + L  L    GI + + H A +D  A 
Sbjct: 180 ---RLCTIDLARRTIA--------------SPKYGLGTLKEILGINNAH-HRALSDAIAA 221

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
             +     +K P   +   D    ++  K +    +T
Sbjct: 222 AEIFKYSLQKLPSEVKTTEDLIEFSKSAKTMKQLKIT 258


>gi|325914917|ref|ZP_08177249.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538810|gb|EGD10474.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 244

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V      E+  S   F      D   +P A  +TG+T
Sbjct: 4   IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F   + +F +  +   +  +N  FD  +  N    +          +
Sbjct: 61  LEFLADKPL----FGDVVEEFLAYIDGAELIIHNAAFDLGFLDNEL--SLLGDGYGRIID 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L + R  Y    +               L  L    G++  H   H A  D  
Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNAHRQLHGALLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILADVYIALTSGQEEI 176


>gi|319892447|ref|YP_004149322.1| DinG family ATP-dependent helicase YoaA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162143|gb|ADV05686.1| DinG family ATP-dependent helicase YoaA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 900

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 27/184 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     D   Q     V    + I+           D         +T I 
Sbjct: 7   YAVVDLETTGNQADYDEIIQIGITFVRNN-QIIDHYHS---MIKTDLTIPTFIQALTSIE 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   +      E + +I+        CI   +N+ FD  + +  F +            
Sbjct: 63  EEMLNQAPY-FKEVAHKIYSKIKD---CIFVAHNVNFDLNFLKRSFKKCHIH-------- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                  +        S++L +LA + GI    AH A  D Y T
Sbjct: 111 -----------YQPKKVIDTLELFKIAFPTEKSYQLTELAESLGIPLTQAHRADEDAYTT 159

Query: 185 LALV 188
             ++
Sbjct: 160 ARIM 163


>gi|323466410|gb|ADX70097.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus H10]
          Length = 927

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 28/205 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++                  V +
Sbjct: 7   KDTFAVVDLETTGTQREKGHHIIQFGCAII-KNMKVVKTYS---FMINPHREIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  +    +    + ++ +I +        +   +N+ FD  +      ++ Y++   
Sbjct: 63  TGIHNEDVQGED-DFSVYAPKIIEILK---GTVFVAHNVDFDLPFLNYELVQHGYEAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL     I+H+N H A +D
Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTAQLKIKHLNPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205
            Y T  L+  I  K   L +   + 
Sbjct: 160 AYGTAVLLIKIIHKLESLPQATLNT 184


>gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsilon [Mycobacterium sp. Spyr1]
 gi|315264683|gb|ADU01425.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. Spyr1]
          Length = 333

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 53/196 (27%), Gaps = 28/196 (14%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +          +  +        P P    + G+T +
Sbjct: 22  VVDVETSGFRPGQARIVSVAALALSDDGNV---EKSLYSLLDPGVDPGP--THVHGLTAE 76

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                     +    + +         +  +N+ FD  +          +    +     
Sbjct: 77  MLEGQP-TFGDVVGDLCEVLR---GRTLVAHNVGFDYSFLSAEAELVGAELPIDT----- 127

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
               ++  +                       +L+ LA   G+  +  HDA  D      
Sbjct: 128 ----VMCTVELARRLDLGLEN----------LRLETLAAHWGVTQMRPHDALDDAMVLAQ 173

Query: 187 LVWLIREKKPKLFEYL 202
           ++  +  +  +  ++L
Sbjct: 174 ILKPVLVRAQERRKWL 189


>gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
 gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
          Length = 256

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 31/202 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          EF      F    N   +  +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKP----EFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPGKRS--------------NLDALCERLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFE 200
            D      +  ++   +  LF+
Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185


>gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum PYR-GCK]
 gi|145214370|gb|ABP43774.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
          Length = 345

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 53/196 (27%), Gaps = 28/196 (14%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +          +  +        P P    + G+T +
Sbjct: 34  VVDVETSGFRPGQARIVSVAALALSDDGNV---EKSLYSLLDPGVDPGP--THVHGLTAE 88

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                     +    + +         +  +N+ FD  +          +    +     
Sbjct: 89  MLEGQP-TFGDVVGDLCEVLR---GRTLVAHNVGFDYSFLSAEAELVGAELPIDT----- 139

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
               ++  +                       +L+ LA   G+  +  HDA  D      
Sbjct: 140 ----VMCTVELARRLDLGLEN----------LRLETLAAHWGVTQMRPHDALDDAMVLAQ 185

Query: 187 LVWLIREKKPKLFEYL 202
           ++  +  +  +  ++L
Sbjct: 186 ILKPVLVRAQERRKWL 201


>gi|217033856|ref|ZP_03439281.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
 gi|216943754|gb|EEC23197.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
          Length = 287

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|323499174|ref|ZP_08104152.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323315807|gb|EGA68840.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 239

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 12/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+  D+ET G D   D       V        +   + +  +P        E+V I GI
Sbjct: 48  TFLAMDFETTGLDSEQDDIITIGTVPFTLNRILVNQAKHWTVRPR--KPLAEESVVIHGI 105

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    L       + +    Q  +  +  I+  +  R +  +          +   +   
Sbjct: 106 THSDVLDAP----DLTEVYPQVLAEMSNRIMVVHYQRIEREFFNRALQTRIQEGIEFPVV 161

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +  +   L          +    + P       S +L       G+     H A  D  A
Sbjct: 162 DTMNIETLWQQKENGGLLNKMRGRKPE------SVRLGASRSRYGLPQYTPHHALTDAVA 215

Query: 184 TLALVWLIREKKPK 197
           T  L+        +
Sbjct: 216 TAELLQAQIAYHYE 229


>gi|58580665|ref|YP_199681.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622598|ref|YP_449970.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|166710938|ref|ZP_02242145.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|58425259|gb|AAW74296.1| DNA polymerase III epsilon chain [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366538|dbj|BAE67696.1| DNA polymerase III epsilon chai [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 244

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V      E+  S   F      D   +P A  +TG+T
Sbjct: 4   IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F   + +F +  +   +  +N  FD  +  N         +      
Sbjct: 61  LEFLADKPL----FGEVVEEFLAYIDGAELIIHNAAFDLGFLDNEL--ALLGDHYGRIVE 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L + R  Y    +               L  L    G++  H   H A  D  
Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILADVYIALTSGQEEI 176


>gi|305665063|ref|YP_003861350.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88709815|gb|EAR02047.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 461

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 72/252 (28%), Gaps = 30/252 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D ET G  +  ++  + +  + D  ++ I+           +         +TGI 
Sbjct: 2   YTIVDIETTGNGIKGNKITEISIFKYD-GYDIIDEFTSL---VNPECEIPYFITGLTGID 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                             H+   +    I   +++ FD    +N       D  R     
Sbjct: 58  NDLVRDAPK----LIEISHKILEITKDTIFVAHSVGFDYGVIKNELKTIGLDFTRKK--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +R                 G  S+ L  +  A  I   + H A+ D +AT
Sbjct: 111 -------LCTVRLSRKL----------IPGYNSYSLGKICSALKIPLTDRHRARGDAHAT 153

Query: 185 LALVWLI--REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
             L   +   +    +F+   + R++         +     +         ++    I  
Sbjct: 154 TLLFQKLLRAKDADAVFKKFLNARSQETTLPPSLPKQTYDNLPTVPGIYYFKNEKGKIIY 213

Query: 243 VAWHPRYKDSVI 254
           V      K  V+
Sbjct: 214 VGKAINIKKRVL 225


>gi|57239226|ref|YP_180362.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161305|emb|CAH58228.1| DNA polymerase III, epsilon subunit [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 242

 Score = 76.0 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 19/139 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G D    DR  +   +      E I+       F      +      A  I 
Sbjct: 10  IVLDTETTGLDADGGDRIIEMGCI------ELIDRVFTGKVFHEYINPERDIPYYATKIH 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT           +E + +   F       ++  +N  FD  + +        D  + S
Sbjct: 64  GITVDMLKDKPK-FSEIADKFLDFI---GNSVLVIHNAVFDIKFIKME-----LDKIQKS 114

Query: 122 WDNGNSRWDLLDVMRAIYA 140
           +++     D L + R  + 
Sbjct: 115 YNSDFQVVDTLILARKKFP 133


>gi|283783236|ref|YP_003373990.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis
           409-05]
 gi|283441075|gb|ADB13541.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis
           409-05]
          Length = 359

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 27/192 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-------CKPADDYLPDP 55
            +FV+ D ET G +  +D+  +   V+     + IE  +               +     
Sbjct: 176 KNFVVIDCETTGLNSKVDKIIEIGAVKF-IDGK-IEEFQKLININCDSVSNFNKNNFIPN 233

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           E + +TGIT       GV      +    F       ++GYN        S      +  
Sbjct: 234 EIIELTGITSNMLESYGVRLDLALKEFINFVERLP--VLGYNVQFD---MSFLNSALSSL 288

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
           D       + N  +D+   ++    F               +++L+ +     I     H
Sbjct: 289 DERFDHSLSINKIFDISRFVKKEKKFL-------------KNYQLKTVLHEYNIAESVPH 335

Query: 176 DAKADVYATLAL 187
            A  D   T  L
Sbjct: 336 RALLDARLTAHL 347


>gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
 gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
          Length = 256

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 59/202 (29%), Gaps = 31/202 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G              +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          EF      F    N   +  +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKP----EFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFE 200
            D      +  ++   +  LF+
Sbjct: 164 LDAEILADVYLMMTGGQTNLFD 185


>gi|323351851|ref|ZP_08087502.1| DNA polymerase III [Streptococcus sanguinis VMC66]
 gi|322121908|gb|EFX93640.1| DNA polymerase III [Streptococcus sanguinis VMC66]
          Length = 814

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SNAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLNDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREK 194
            AD  AT  L   I++K
Sbjct: 152 LADAQATAQLFLKIQDK 168


>gi|307638212|gb|ADN80662.1| DNA polymerase III epsilon subunit [Helicobacter pylori 908]
 gi|325996805|gb|ADZ52210.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2018]
 gi|325998398|gb|ADZ50606.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2017]
          Length = 287

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V R  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-RGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|297808725|ref|XP_002872246.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318083|gb|EFH48505.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 316

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 63/224 (28%), Gaps = 27/224 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             ++ D ET G +   +R  + A   +            F        +P      I GI
Sbjct: 110 TVIVSDLETTGLNRKRERIIEIAAQDLAGGG-----YSTFQTLVNPGDVP-VTNTDIHGI 163

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFS---VPNTCI--IGYNNIRFDDYYSRNIFYRNFYDS 117
                 R  V    E      Q+      P   +  + +N   FD  +  N F R  Y+ 
Sbjct: 164 RTDMVCRPEVPRMEELIPIFLQYVESRQKPGGYVMLVAHNGKSFDFRFLINEFNRCSYEI 223

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176
                 +     D L + R          +            L+ L          +AH 
Sbjct: 224 -----PHNWLLLDSLPLGREHMKSLDPTGK--------PKASLKVLQEHYSLTREGDAHR 270

Query: 177 AKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           A +DV     +   L  + K  L + +      + +  ++    
Sbjct: 271 ALSDVLLLSKVFQKLTIDLKLSLSDLVLRCHTASDIIAVMAKNK 314


>gi|315126562|ref|YP_004068565.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
 gi|315015076|gb|ADT68414.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
          Length = 233

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 13/193 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G D   D       V  +      + +  +  +P  D     E++ I GIT
Sbjct: 44  FVALDFETTGLDANSDDIVSVGLVPFNVNRIYCKESRHWVVQPRRDL--SEESIVIHGIT 101

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +         + +R +          ++  +    + ++  N       +        
Sbjct: 102 HSEVDEAP----DLNRILAPLLDALKGKVVVVHYAAIERHFFYNALLMRIKEGIE----- 152

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D +++ R         +          S +L D      +     H+A  D  AT
Sbjct: 153 -FALVDTMEIERRALKARQGLLGRLFNSK-LGSLRLSDTRERYSLPLYQNHNALTDALAT 210

Query: 185 LALVWLIREKKPK 197
             L+        +
Sbjct: 211 AELLQAQLSYHYR 223


>gi|171743164|ref|ZP_02918971.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC
           27678]
 gi|283455845|ref|YP_003360409.1| DNA polymerase III, subunit epsilon [Bifidobacterium dentium Bd1]
 gi|171278778|gb|EDT46439.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC
           27678]
 gi|283102479|gb|ADB09585.1| DNA polymerase III, epsilon subunit [Bifidobacterium dentium Bd1]
          Length = 212

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 50/203 (24%), Gaps = 23/203 (11%)

Query: 3   NHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           + +V+ D ET G          +   + V     +      F                +T
Sbjct: 23  DTYVMLDTETTGLHPEEGATIIEIGALLVTP-GNENARP-RFEQLVDPQRPLPEFISRLT 80

Query: 62  GITPQKALRDGVVEAEFS---RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           GI+          +A      + +   +       I  +N  FD  +       +  D+ 
Sbjct: 81  GISDGMLRDKPTADAAMLRFHQWLDDVWPTGKPLTIIAHNAEFDIGFLDAAERAHDPDAN 140

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +                    +          +      ++ DL +   I  V  H A 
Sbjct: 141 EF-----------------DCRWLCTKEMSWELNPRKRHHRVSDLIVDYRIGDVEEHRAL 183

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
           +D      +   +  +      +
Sbjct: 184 SDAIQEQMIYRALCREASMRGRW 206


>gi|78186872|ref|YP_374915.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273]
 gi|78166774|gb|ABB23872.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273]
          Length = 236

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 23/189 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V++D ET G D+  D       V ++       +S EV   +   D +   EAV + G+ 
Sbjct: 50  VVFDTETTGFDLKTDGVISIGAVAINGLSINVADSFEVLVRQ---DRVGRSEAVAVHGLL 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +     G  E E +    ++     + I+   +  FD      I    F          
Sbjct: 107 KKDIAG-GAGEVEAAEAFLEYI---GSSILVAQHASFDVAMLNRILSETF---------- 152

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADVY 182
              R  L + +    + +    + P  +    +  ++L  L    GI   + H A  D +
Sbjct: 153 ---RIRLFNGVVDTASLAKRLEKGPYYNLAHKAGEYRLDHLCQRYGIRLYDRHTAAGDAF 209

Query: 183 ATLALVWLI 191
            T  L+  +
Sbjct: 210 LTAQLLQRL 218


>gi|309807500|ref|ZP_07701459.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169250|gb|EFO71309.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
          Length = 234

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 4   FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 60  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 111

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 112 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 156

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I +K   L     +         L +   +   V           N  LI
Sbjct: 157 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 213


>gi|256043519|ref|ZP_05446446.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 224

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 13  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 69  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                  +  +D  R ++                 S KL       G     + H A  D
Sbjct: 123 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 165

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    ++    
Sbjct: 166 AYLTAGLYLHQQDVAKP 182


>gi|114321417|ref|YP_743100.1| ribonuclease T [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227811|gb|ABI57610.1| RNAse T [Alkalilimnicola ehrlichii MLHE-1]
          Length = 216

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   Q A V  R+D        +T     KP +    DP+A+ + G
Sbjct: 25  VVVDVETGGLNAATDALLQIAAVVLRMDENGRLYPAATHTCHVKPFEGANIDPKALELNG 84

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  + E E  +++ +           N  ++  +N  FD  +      R    
Sbjct: 85  IDPDHPLRMALPEDEALKKVFRPIRQEVRQTGCNRAVLIGHNSFFDLGFLNAAVQRCGIK 144

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +       +                    +A     +   AH 
Sbjct: 145 RNPFHPFTSFDTATLAGLAYGQTVLAKAL-----------------VASGEEWDGKAAHS 187

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 188 AIYDAEKTADLFCGIVNR 205


>gi|325956898|ref|YP_004292310.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC]
 gi|325333463|gb|ADZ07371.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC]
 gi|327183677|gb|AEA32124.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1118]
          Length = 926

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++                  V +
Sbjct: 7   KDIFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYS---FMINPHREIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+     +    +  ++ +I +        +   +N+ FD  +      ++ YD+   
Sbjct: 63  TGISNGDVQKQKDFDF-YAPKIVKILQN---TVFVAHNVDFDLPFLNYELTQHGYDAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL     I+H+N H A +D
Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTAQLEIKHLNPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
            Y T  L+  I ++   L +   +  +
Sbjct: 160 AYGTAILLIKIIKQLETLPQATLNTLS 186


>gi|315038483|ref|YP_004032051.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|312276616|gb|ADQ59256.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112]
          Length = 926

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++                  V +
Sbjct: 7   KDIFAVVDLETTGTQRENGHHIIQFGCAII-KNLKVVKTYS---FMINPHREIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+     +    +  ++ +I +        +   +N+ FD  +      ++ YD+   
Sbjct: 63  TGISNGDVQKQKDFDF-YAPKIVKILQN---TVFVAHNVDFDLPFLNYELTQHGYDAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL     I+H+N H A +D
Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTAQLEIKHLNPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
            Y T  L+  I ++   L +   +  +
Sbjct: 160 AYGTAILLIKIIKQLETLPQATLNTLS 186


>gi|213964467|ref|ZP_03392667.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum
           SK46]
 gi|213952660|gb|EEB64042.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum
           SK46]
          Length = 226

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 62/203 (30%), Gaps = 33/203 (16%)

Query: 2   TNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
            ++F     + +D ET G D    +    A VR+  Q +     +               
Sbjct: 1   MHNFDPRRMLAFDLETTGTDPRTCKIVTSALVRLTEQGK-----DSTIMLADPGVEIPQA 55

Query: 57  AVFITGITPQKALRDGVVEAEF-SRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNF 114
           A  + GIT +KA  +G    E  +  I    +   +   +   N  +D    R+      
Sbjct: 56  ASDVHGITTEKARAEGRPHDEVLADTIAGLKAAWRDGLTVVAYNAAYDLTVLRS------ 109

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                    + N   D L          P  +      D      L D++    +    A
Sbjct: 110 --------QDPNFTVDGL-------VVDPFVLDNYFDPDRREKRTLTDVSRHYQVRLDGA 154

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           HDA  D  A   + W++     +
Sbjct: 155 HDATEDALAAARIAWVMARHYRE 177


>gi|148239379|ref|YP_001224766.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803]
 gi|147847918|emb|CAK23469.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803]
          Length = 272

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 29/192 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +  +I D ET G D   D+  +   +       ++ +     C    D+ P   A  I 
Sbjct: 41  PSRLLIVDTETTGLDADRDQCLELGAILFSIPHRQVLAQMS--CLLPVDHNP---AEAIN 95

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I P +  R      +      +  +  +   +  +N  FD  +                
Sbjct: 96  RI-PAEVSRLDQPWGDGLAWFERMMASAD--YLVAHNAAFDRQWFGRGS----------- 141

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L      +  + + ++WP   +      + DLALA GI   +AH A  D 
Sbjct: 142 ----------LPEATRPWLCTLEDVRWPEARNLRARPSVIDLALAYGIPVWSAHRALTDC 191

Query: 182 YATLALVWLIRE 193
                +     +
Sbjct: 192 MYLAEVFQRCDD 203


>gi|188533941|ref|YP_001907738.1| ribonuclease T [Erwinia tasmaniensis Et1/99]
 gi|188028983|emb|CAO96849.1| Ribonuclease T [Erwinia tasmaniensis Et1/99]
          Length = 218

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 64/217 (29%), Gaps = 30/217 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A V  ++D       + T  F  +P    +  PEA+   G
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDNDGWLVKDETLHFHVEPFPGSILLPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  ++  +N  FD  +      R    
Sbjct: 80  IDPANPLRGAVSEYESLHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L     A G+      A
Sbjct: 140 ------RNPFHPFVTFDTAALSGLVLGQTV-------------LAKACHAAGMTFDSSQA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
           H A  D   T  L   +  +  +L  +      K+  
Sbjct: 181 HSALYDTLQTADLFCELVNRWKRLGGWPLPLAAKSDA 217


>gi|295424856|ref|ZP_06817571.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
 gi|295065422|gb|EFG56315.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
          Length = 934

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 68/206 (33%), Gaps = 30/206 (14%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G      +   QF    + +  + +++                    +
Sbjct: 7   KDTFAVVDLETTGTQRENNNHIIQFGCAII-KNMKVVKTYS---FMINPHREIPLSVQNL 62

Query: 61  TGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           T I  +   +         +++I          +   +N+ FD  +      ++ Y +  
Sbjct: 63  TRIHNEDVEKAPDFSHY--AKKIIAILED---TVFVAHNVNFDLPFLNYELMQHGYPAL- 116

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                 N   D +++ +  +                 S+KL DL     I+H+N H A +
Sbjct: 117 -----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTSRLAIKHLNPHKADS 158

Query: 180 DVYATLALVWLIREKKPKLFEYLYDY 205
           D Y T  L+  I  +  KL +   + 
Sbjct: 159 DAYGTAILLIDIIHRLEKLPQATLNT 184


>gi|268679463|ref|YP_003303894.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617494|gb|ACZ11859.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 203

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 48/183 (26%), Gaps = 20/183 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G +   D       V+V      +      F KP   +  +  ++ I  I  
Sbjct: 32  VVFDTETTGLNPKKDEILSIGAVKVRGNKILMSEKFELFVKPR--FEVNETSIKIHQIRN 89

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  +   E   +   F       ++GY         ++ +             +  
Sbjct: 90  IDVQNA-LSPREAIEQFLHFIGARP--LVGYYLEFDVAMINKYLKAWLNIYLPNPQIELS 146

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D                +     DG    +   +    G+     HDA  D   + 
Sbjct: 147 GLYHD---------------KKIKRIPDGVIDLRFDVMMKELGLPIFGKHDALNDAMMSA 191

Query: 186 ALV 188
            + 
Sbjct: 192 MMY 194


>gi|229051643|ref|ZP_04195113.1| exonuclease [Bacillus cereus AH676]
 gi|228721754|gb|EEL73228.1| exonuclease [Bacillus cereus AH676]
          Length = 287

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 11/136 (8%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + FVI D ET G     D+  + + +  D   + +              +   EA  I 
Sbjct: 128 KDQFVILDTETTGL-TLRDQIIEISVI--DLAGKIL-----LNSLVKPTIIIPAEATSIH 179

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +          E  + + +  +     ++ YN               N       S
Sbjct: 180 GITNEMVHDAP-SWIEIYKELCEVTA--GKTLLIYNAEFDLGMIESTCITNNVEFKSFKS 236

Query: 122 WDNGNSRWDLLDVMRA 137
                   D +D  R 
Sbjct: 237 TCIMKMYADFIDSKRW 252


>gi|297584227|ref|YP_003700007.1| exonuclease RNase T and DNA polymerase III [Bacillus
           selenitireducens MLS10]
 gi|297142684|gb|ADH99441.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           selenitireducens MLS10]
          Length = 233

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 56/200 (28%), Gaps = 27/200 (13%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            ++D ET G      DR     GV++ +  E  +  + F+     D         +TGI 
Sbjct: 52  TVFDLETTGFFPQKQDRILSIGGVKI-KNNEITD--DTFYSFVYYDQPISETIRHLTGIQ 108

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  L         +  + +FF+     +   ++   +  + ++  +R+F          
Sbjct: 109 EEDVLNAPAE----ADVLTRFFAFAEDDLFIAHHAAHEKGFMQDALWRSFR--------- 155

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                     + D   + +L+       IE    H A  D    
Sbjct: 156 ----------ATFQRRLIDTIFLTKLQPDLRDTAELEACCRYFNIEPAGRHHALHDAKLA 205

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L          +  +   
Sbjct: 206 AELWIHSVNVMESMGIHTLK 225


>gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 1479

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/415 (13%), Positives = 107/415 (25%), Gaps = 51/415 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G    LD   +F  +  + +  + +  ++                 +T I  
Sbjct: 433 VFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDIL---IKPKSKLKDFTKKLTNINE 489

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +       +E  F + I+Q        I+  +N  FD  +  +   +  Y     +    
Sbjct: 490 EMLENKPGIEVAF-KEINQVIKD---AILVAHNANFDYTFLSHWSEKLGYGKLENT---- 541

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183
               D L + R IY                 S +L  LA    I +    AH    D   
Sbjct: 542 --IIDTLTISRIIY-------------PELKSHRLGSLAKRVNISYDPSIAHRGDYDADI 586

Query: 184 TLALV--------WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
              +            +      ++ +    N + L              +       + 
Sbjct: 587 LADIYERMLDDTRKKTKITIDSDWDKINPLNNIDNLN--YHKNKGFHTNILVKNQTGLKE 644

Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL---DSVQLAKRLFTSHDELKGLVPVPI 292
              L+        Y    I  +   +++   +L    S   ++    +       +   I
Sbjct: 645 LYKLVTKSHTTNFYSSPKIFKSDLIEVKKNNNLLFGSSCVNSEIFELARTSTLENLKQAI 704

Query: 293 KEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS 352
                 +   +       +          K     +++ RQ+  L       +       
Sbjct: 705 SFYDYIEIQPISVYKNLLQNDSLDLDQLKKIITNIISIARQENKLIVASSDCHYTNPELK 764

Query: 353 SQDVDSQLYDG---------FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPE 398
                     G          F +  +   D+ LRT  E L   +    D  L  
Sbjct: 765 QIREVYINAKGLGGIRHPLFDFNNKVKDYPDQYLRTTNEMLEEFSW-LEDENLIY 818


>gi|307326746|ref|ZP_07605938.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306887509|gb|EFN18503.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 241

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 63/191 (32%), Gaps = 20/191 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V            E+     +      P A  I G+T   
Sbjct: 12  FDTETTGVDVEHDRIVSAALVVQRGTGSL---PEIRRWLVSPGVPVPPAATEIHGLTDAH 68

Query: 68  ALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             R G   A    E +R I +  +     ++   N  FD         R+          
Sbjct: 69  LQRHGRWPAPVMDEMARAIAEQTARGTPLVVM--NAPFDLTLLDRELKRH---------- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             NS       +R++    P  +             L DL    G+E   AHDA AD  A
Sbjct: 117 -RNSSLAGYLSLRSMSVLDPRVLDKHLDRYRKGRRTLLDLCAHYGVELTGAHDAAADAAA 175

Query: 184 TLALVWLIREK 194
           +L +V  +  +
Sbjct: 176 SLHVVRAVGRR 186


>gi|227485452|ref|ZP_03915768.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227236582|gb|EEI86597.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 295

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 29/186 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  ++I D ET G D   DR  +   +++    ++ +       +   D     +   IT
Sbjct: 126 TKAYIIIDLETTGLDPINDRIIEIGAIKI---GKENKEYSSIIWQ---DIKLSEKISNIT 179

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +   + G  E         F        +   NI FD  +      R         
Sbjct: 180 GISDEDI-KKGKDEKNAINEFIDFI---GEDTLVGYNINFDIKFINESLKRQEKP----- 230

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N  +D++  ++    F               ++KL+ +    GI     H A  DV
Sbjct: 231 -KIKNMTYDVMQYVKNDKLFL-------------KNYKLETVIKEYGINKNVPHRALEDV 276

Query: 182 YATLAL 187
                L
Sbjct: 277 KIIQKL 282


>gi|239918000|ref|YP_002957558.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665]
 gi|281415824|ref|ZP_06247566.1| DNA polymerase III subunit epsilon [Micrococcus luteus NCTC 2665]
 gi|239839207|gb|ACS31004.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665]
          Length = 228

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 52/192 (27%), Gaps = 22/192 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET GRD           V VD       S E              EA  + G+T ++
Sbjct: 11  FDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWL---VDPGVPIPAEAAEVHGVTTER 67

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G+  A+    I +           +   N  +D         R+            
Sbjct: 68  AQAEGMPAAQGVTEITETLRDLFAAGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVID 127

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D                             L  ++   G+   NAH + AD  A +
Sbjct: 128 PFVLDKQ-----------------VDRFRKGKRTLSAVSEHYGVTLENAHTSAADALAAV 170

Query: 186 ALVWLIREKKPK 197
            +   +  +  +
Sbjct: 171 QVADALAAQYEQ 182


>gi|218709246|ref|YP_002416867.1| putative exonuclease [Vibrio splendidus LGP32]
 gi|218322265|emb|CAV18390.1| putative exonuclease [Vibrio splendidus LGP32]
          Length = 238

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 19/201 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++ D ET G D   D       V V +   +I+          +D   + E   I  IT
Sbjct: 51  YIVLDLETTGLDSEQDLILSMGWVDVVKG--RIDLASAKHIYLDNDSQINAETAVINHIT 108

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ    +G    +       FF      II  +    ++ +      R +          
Sbjct: 109 PQML-EEGASIHDAM---LTFFEAAKGKIIVAHACVVEEKFISQYLLRCYG--------- 155

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  + ++          ++    +       L       G+   N+H+A AD  +T
Sbjct: 156 ----LRAIPLLWLDTLCIEKSMEKAISNHEEVDLTLAGTRERYGLPEYNSHNALADAVST 211

Query: 185 LALVWLIREKKPKLFEYLYDY 205
             L    +++     E    +
Sbjct: 212 AELFLAQQKRVVPNDEVTLSF 232


>gi|227494840|ref|ZP_03925156.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM
           15436]
 gi|226831292|gb|EEH63675.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM
           15436]
          Length = 232

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 23/200 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + +D ET G D A DR    A   V    E +E   + F            A+ + GI
Sbjct: 7   NLLGFDLETTGVDTARDRIVT-ASYEVRCGSEVLEQVTLLF---NPGVEIPQSAIDVHGI 62

Query: 64  TPQKALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           T ++A  +G+       + + ++  + S     ++G+N  +FD     N   R    +  
Sbjct: 63  TNERAQAEGLDPRVGLEQLAAKLVSYLSE-GAPLVGFNV-QFDVTLLENELRRYGLPTVA 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDA 177
                G     ++D +        +  +W          KL DL    GI  +    H +
Sbjct: 121 E--RLGGRFAPIVDPL----VLDRELDRW-----RKGKRKLVDLLEVYGIAVDPDELHQS 169

Query: 178 KADVYATLALVWLIREKKPK 197
             DV  TL+L+  +  K P+
Sbjct: 170 DVDVSMTLSLLQAMVRKYPQ 189


>gi|78485275|ref|YP_391200.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena
           XCL-2]
 gi|78363561|gb|ABB41526.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena
           XCL-2]
          Length = 231

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 60/194 (30%), Gaps = 25/194 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    D+  +   V      ++  +   +      +     +A+ + GIT
Sbjct: 4   ILLDTETTGFDPKNGDKIIEIGAV---ELIKRKLTHNNYHQYIQPERDVPIDAIEVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +   +    F+  +  F        +  +N  FD  +      +   ++     ++
Sbjct: 61  NEFLVGKPI----FADVVDDFMEYVAGAELIIHNAPFDVGFINQELSQ-LPNNKWGKIED 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             +  D L + R  Y    +               L  L     I++ N   H A  D  
Sbjct: 116 HCTITDSLKMARKAYPGQRN--------------SLDALCKRFLIDNSNRTLHGALLDSE 161

Query: 183 ATLALVWLIREKKP 196
               +   +   + 
Sbjct: 162 ILADVYLAMTGGQT 175


>gi|319944001|ref|ZP_08018281.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia
           mirabilis ATCC 51599]
 gi|319742762|gb|EFV95169.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia
           mirabilis ATCC 51599]
          Length = 238

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 51/196 (26%), Gaps = 27/196 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G + +   R  +   V       +  +          +   D  A  + G+T
Sbjct: 8   VVLDTETTGLEASKGHRIIEIGCV---EMVNRRITRNNLHLYINPEREVDEGAAAVHGMT 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                        F++ + QF        I  +N  FD  +      R    ++     +
Sbjct: 65  WDDLRDKPT----FAQIVDQFLDFCRGAEIIIHNASFDTGFLDAELARLGRGTFA---SH 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADVY 182
                D L + R  Y                    L  L        +H   H A  D  
Sbjct: 118 VACVTDSLAMARERYPG--------------KRNNLDALCERLMVPNKHRTLHGALLDSE 163

Query: 183 ATLALVWLIREKKPKL 198
               +   +   +   
Sbjct: 164 LLAEVYLGMTRGQGSF 179


>gi|218710290|ref|YP_002417911.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32]
 gi|218323309|emb|CAV19486.1| DNA polymerase III, epsilon subunit [Vibrio splendidus LGP32]
          Length = 255

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 58/203 (28%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              ++ D ET G +          R  +   V +    +       F      D     E
Sbjct: 21  KRIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEI-INRKLTGRH--FHVYIKPDRAIQEE 77

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +  +     E +   +  +F        +  +N  FD  +    F +   +
Sbjct: 78  AIGVHGITDEFLIDKP--EYQDIHK--EFLDFIKGAELVAHNAPFDTGFMDYEFEK--LN 131

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                 D+     D L + + I+                    L  L    GI+  H   
Sbjct: 132 PAIGKTDDYCKVTDTLAMAKKIFPG--------------KRNNLDILCDRYGIDNSHRTL 177

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 178 HGALLDAEILADVYLLMTGGQTS 200


>gi|170750672|ref|YP_001756932.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657194|gb|ACB26249.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
           JCM 2831]
          Length = 240

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 53/186 (28%), Gaps = 26/186 (13%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V +         T   +C           A  + G++
Sbjct: 5   IVLDTETTGTEAKGGDRLIEIGAVEL-LNHIPTGRTFHRYC--NPQRPVSEGAFNVHGLS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V  AE    +  F +      +  +N  FD  +    + R   ++       
Sbjct: 62  DAFLADKPV-FAEIVGELLAFLADGR---LVIHNAPFDVGFLNMEYARLGANAPPPIQLE 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  + +               L  L    GI++     H A  D  
Sbjct: 118 D--VVDTLPMARRKHPGAAN--------------NLDALCARYGIDNTRRTKHGALLDAQ 161

Query: 183 ATLALV 188
               + 
Sbjct: 162 ILAEVY 167


>gi|324990933|gb|EGC22868.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK353]
          Length = 814

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 68/207 (32%), Gaps = 32/207 (15%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G      +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTGSGA-KIIQIGIVLI-ENGIITKTYET---DVNPHEDLDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
            AD  AT  L   I++K   L + L +
Sbjct: 152 LADAQATAQLFLKIQDKIKSLPKALLE 178


>gi|309779749|ref|ZP_07674506.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA]
 gi|308921488|gb|EFP67128.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA]
          Length = 216

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 50/183 (27%), Gaps = 14/183 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G +V  D       VR+               +P  +    PE++ +  +  
Sbjct: 39  VALDCETTGLNVRTDEIVSIGAVRIVGNRILTSEPLELLIRPQGEMR--PESICVHRLRN 96

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +     GV   +    +  F    +  ++GY         +R +         +   +  
Sbjct: 97  RDL-DSGVSIEQAIHALLHFI--GSRPLVGYYLEFDVAMLNRVVVPMLGIGLPQPKIEVS 153

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +D                 +  + D     +   +     +   +AHDA  D     
Sbjct: 154 ALYYDYQ---------FEQLPPYRQQGDPDLDLRFATVMKELDLPTWDAHDALNDAVMAA 204

Query: 186 ALV 188
              
Sbjct: 205 LAF 207


>gi|256059183|ref|ZP_05449390.1| DNA polymerase III, epsilon chain [Brucella neotomae 5K33]
          Length = 224

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 13  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 69  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDMLDQP 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
           +      +  +D  R ++                 S KL       G     + H A  D
Sbjct: 126 F------YCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 165

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    +     
Sbjct: 166 AYLTAGLYLHQQGVAKP 182


>gi|167464941|ref|ZP_02330030.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
          subsp. larvae BRL-230010]
          Length = 89

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
          M   + ++D ET G D   D+  +   +R D    +    +V   K        PE + +
Sbjct: 1  MREIYTVFDLETTGLDPTKDQITEITAIRTDL-IREYGRLDVRITK-NSGTKLTPEIINL 58

Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS 87
          TGI        G+ E      +  F S
Sbjct: 59 TGINESMMRG-GIPEELAIPLLACFMS 84


>gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 244

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V      E+  S   F      D   +P A  +TG+T
Sbjct: 4   IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F   + +F +  +   +  +N  FD  +  N    +           
Sbjct: 61  LEFLADKPL----FGEVVDEFLAYIDGAELIIHNAAFDLGFLDNEL--SLLGDNYGRIVE 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L + R  Y    +               L  L    G++  H   H A  D  
Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILADVYIALTSGQEEI 176


>gi|262204572|ref|YP_003275780.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
 gi|262087919|gb|ACY23887.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
          Length = 590

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 54/185 (29%), Gaps = 28/185 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +   DR    A + +D      +              P P  V I  +T 
Sbjct: 11  VLVDVETTGTNARRDRVLSLATMTLDYDGRVEDEYATL---LNPGCDPGP--VHIHNLTR 65

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            +       +   S  + Q  +      +  +N  FD  +      R             
Sbjct: 66  DRLHGAPTFDVTMSP-LQQMLA---GRTMVAHNATFDHGFLVEEARRLGATLPI------ 115

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           + R   + + R +                  + KL  LA   GI    AHDA+ DV    
Sbjct: 116 DHRLCTVTLARRLQL-------------DVPNVKLGTLATYWGIRQRAAHDARDDVRTLA 162

Query: 186 ALVWL 190
            +   
Sbjct: 163 EVFRR 167


>gi|254457146|ref|ZP_05070574.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207085938|gb|EDZ63222.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 247

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 7/115 (6%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +VI D ET G     DR  Q   V +  +  ++     F+     D      A+ +
Sbjct: 1   MAKKYVILDTETTGVG-ENDRVIQLGYVVLGAKDVEV--HNEFYSS---DVPISFGAMEV 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            GITP             + +     +V    +I +N   FD        +    
Sbjct: 55  HGITPDMLENKPACRDSVAYKRLCELNVSENYMIIHNAP-FDLGMLEKEGFNTQM 108


>gi|15891836|ref|NP_357508.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str.
           C58]
 gi|15160320|gb|AAK90293.1| polymerase epsilon subunit [Agrobacterium tumefaciens str. C58]
          Length = 326

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 73/244 (29%), Gaps = 39/244 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           VI D ET G D   D   +   +    D Q    + T ++            +   +TGI
Sbjct: 74  VILDTETTGLDHRTDEIIEIGVITFTFDDQGAIGDVTGIYGGLRQPGVAIPEDITRLTGI 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +       R+    +  +  +I  +N  FD  +                  
Sbjct: 134 TDEMVAGQSID----MMRLTSLIAHAD--LIIAHNAGFDRPFCEA--------------- 172

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +    A++    +   R  G    KL  L   +G  H   H A  D +A
Sbjct: 173 --------FSPIFRDKAWACSVSEIDWRVRGFEGNKLGYLIGQSGYFHDG-HRAVDDCFA 223

Query: 184 TLALVWLIREKKPKL-FEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA------SRSN 236
            L ++   R  +    F  LY+   ++++R   +        H+             R  
Sbjct: 224 LLEVLEQRRSGQNITPFAELYEASGRSRVRIYAENSPFDMKDHLKKRGYRWSDGSDGRPK 283

Query: 237 TALI 240
           +  +
Sbjct: 284 SWWV 287


>gi|324993194|gb|EGC25114.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK405]
 gi|327461463|gb|EGF07794.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1]
 gi|327489318|gb|EGF21111.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1058]
          Length = 814

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SNAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREK 194
            AD  AT  L   I++K
Sbjct: 152 LADAQATAQLFLKIQDK 168


>gi|255292918|dbj|BAH90017.1| DNA polymerase III epsilon subunit [uncultured bacterium]
 gi|255293172|dbj|BAH90263.1| DNA polymerase III epsilon subunit [uncultured bacterium]
          Length = 297

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 38/188 (20%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G D   D   + A    +       +   +S +             PE   I
Sbjct: 44  LVVDVETTGLDPQRDEIIELAMTPFNYGLDGTIFSVGDSFQRLR---QPSKPIAPEITAI 100

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +          +               ++  +N  FD  +               
Sbjct: 101 TGITNEMVAG------QIVDPAAVASFAAPASLVIAHNAAFDRRF--------------- 139

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    +  + + +   ++    Q     +G    KL  LA A G    + H A  D
Sbjct: 140 --------LERFNDVFSTKPWACSLSQIDWAAEGFEGTKLAYLAQAAGF-FYDRHRAMHD 190

Query: 181 VYATLALV 188
             AT+ L+
Sbjct: 191 CLATVELL 198


>gi|78777649|ref|YP_393964.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM
           1251]
 gi|78498189|gb|ABB44729.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 205

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 20/192 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G +  +D       V++     ++ +++ F     +       ++ I GI 
Sbjct: 34  YVVFDTETTGLNPKVDEILSIGAVKIKD--NRVLTSQTFEVFLQNSKEISSNSIKIHGIR 91

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P         +      I +F +   +  +    + FD                   +  
Sbjct: 92  PFDLKDAKTTK----EGIVEFLNFIGSRPLIGYYLEFDVAMINR-------------YTK 134

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                +L + M  +     D         G    +   +     I ++ AH+A  D   T
Sbjct: 135 PLLGINLPNKMIEVSEIYFDKT-ISLIPQGNIDLRFDTILKNCSIPNMGAHNAVNDAIMT 193

Query: 185 LALVWLIREKKP 196
             +   + ++K 
Sbjct: 194 AMIYLKLTKEKE 205


>gi|89098849|ref|ZP_01171730.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911]
 gi|89086525|gb|EAR65645.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911]
          Length = 243

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 59/200 (29%), Gaps = 26/200 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G      D       V+++     I   + F+     +    P+   +TG+ 
Sbjct: 60  IVMDIETTGFFPDQGDEIISIGAVKIENG--TINEDKKFYSLIRYEKTLSPQIEQLTGLR 117

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +         E    + +FF       I  ++ R +  + +N  +++F          
Sbjct: 118 GSQLKEAP-PLPEV---LIEFFKFCEARTIIAHHARHEKSFLQNASWKHFKAPL------ 167

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +   D   + R               +      +L+DL   NGI  +  H A  D    
Sbjct: 168 KHRIIDTSFLYRIA-------------EPELNLQRLEDLCSHNGIPVMERHHALEDARLA 214

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L      K          
Sbjct: 215 AELWCCYISKVRDKGCMTLK 234


>gi|326314849|ref|YP_004232521.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323371685|gb|ADX43954.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 222

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 9/119 (7%)

Query: 2   TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++   + D+ET G   +   R  + A V +  +   ++  +             P  V +
Sbjct: 3   SSRIAVIDFETTGMTPSQGARATEVAIVLM-EEGRPVDRFQSLM---KTGAWLPPFIVQL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           TGITP         E+   R   +F        +  +N  FD  +      R    S  
Sbjct: 59  TGITPAMLDTAPPAES-VMREAARFV---GDAPMVAHNASFDSRFWAAELARADLPSPH 113


>gi|262341288|ref|YP_003284143.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272625|gb|ACY40533.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 256

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 72/251 (28%), Gaps = 28/251 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D E  G ++  DR  + + +++     + + T    C         P++  I GI 
Sbjct: 9   ICFFDIEATGINIGKDRIIEISILKIFPNGNQEDKTW-LVC---PGIPIPPQSTAIHGIK 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +   + +  I +     NT + GYN+ RFD         R            
Sbjct: 65  NEDVEGK-LKFKDVAFSIFKMIE--NTDLAGYNSNRFDIPILAEEMLRAGISFDIKKHKT 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            + +                                         E + AH +K D +AT
Sbjct: 122 IDVQV--------------------IFHKMEPRTLSAAYKYYCSKELIKAHSSKEDAFAT 161

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL-VHVSGMFGASRSNTALIAPV 243
             ++    EK   L + +      +  + + D+     +    + +F   +     +  +
Sbjct: 162 YEILLSQLEKYENLKKDVKSLNQFSHQKNIADLAGFVKIDEEGNEIFNFGKYKGEKVFEI 221

Query: 244 AWHPRYKDSVI 254
                     I
Sbjct: 222 FEKDPNYYEWI 232


>gi|259502638|ref|ZP_05745540.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169453|gb|EEW53948.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 224

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 29/193 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFITG 62
           FV  D ET G +    +      V+          T  F+   K         +   +TG
Sbjct: 55  FVSLDLETSGLNPTTAQIISIGAVK-----RIAGHTTTFYRLVKLQSGKKLAGDIARLTG 109

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +  Q+   +GV   E    +  F       I+GYN + FD+ + +    R          
Sbjct: 110 LNSQQLATEGVAVKEALIDLQSFAKKLP--IVGYNLL-FDERFLQTAVIRAGI------V 160

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D+L  ++ +  F  +             + L  +    GI++  AH++ AD  
Sbjct: 161 QFNNKMVDVLPYVKTVDKFCDN-------------YHLATILTRYGIKNEQAHNSLADAT 207

Query: 183 ATLALVWLIREKK 195
           AT+ LV  + +  
Sbjct: 208 ATMKLVDKLIKIH 220


>gi|217032955|ref|ZP_03438429.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
 gi|216945324|gb|EEC23998.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
          Length = 287

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 61/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPIKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 TYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPK 260


>gi|86747524|ref|YP_484020.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
 gi|86570552|gb|ABD05109.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 231

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +             +  P  D     EA  + G++
Sbjct: 4   IVLDTETTGLDPLRGDRLVEIGCVEI-YNRMPTGQVYHQYINPERDM--PAEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V  A+ +     F        +  +N  FD  +      R    +       
Sbjct: 61  SEFLADKPV-FAQVADAFIDFI---GDAPLVIHNASFDIGFINAELARLSRAAIPRERL- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 116 ----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|311741567|ref|ZP_07715391.1| probable DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303737|gb|EFQ79816.1| probable DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 442

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 70/230 (30%), Gaps = 24/230 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63
           F   D ET   +       Q   VR  R  ++ +S   + C P        +  V I GI
Sbjct: 100 FTAVDVET--ANDNWGSICQIGAVRF-RDGQETDSR-SWLCTPPPGLEHFADINVSIHGI 155

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           A+ ++ +  F       ++  +N +FD    R+       +       
Sbjct: 156 TADDVKGAPA-FADVAKELFDFL---GGDVLVAHNAQFDSTALRSGLLTAGAE------- 204

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +  +    + +       ++     + KL  +A        + HDA  D  A
Sbjct: 205 --------VPTVPLACSLALSRDASKAKVISVRNHKLPTVAAHLSAPDFSHHDATEDARA 256

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
              ++  + E+          +  +      +D + + P++       + 
Sbjct: 257 AGEIIARLAERFGHTGSIRDLFTAREFTLGRLDSEAILPVLRAHTAPTSG 306


>gi|39933378|ref|NP_945654.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           CGA009]
 gi|39653003|emb|CAE25745.1| putative DNA polymerase III epsilon chain [Rhodopseudomonas
           palustris CGA009]
          Length = 232

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 55/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +   + ++ +   +      +     EA  + G++
Sbjct: 4   IVLDTETTGLDPLRGDRLVEIGCVEI---FNRMPTGRTYHQYLNPERDMPAEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  A  +    +F        +  +N  FD  +      R            
Sbjct: 61  SEFLADKPL-FAHVADEFLEFI---GDAPLVIHNASFDIGFINAELSRLSRAPVPR---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|260753544|ref|YP_003226437.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552907|gb|ACV75853.1| Exonuclease RNase T and DNA polymerase III [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 297

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 38/188 (20%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G D   D   + A    +       +   +S +             PE   I
Sbjct: 44  LVVDVETTGLDPQRDEIIELAMTPFNYGLDGTIFSVGDSFQGLR---QPSKPIAPEITAI 100

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +          +               ++  +N  FD  +               
Sbjct: 101 TGITNEMVAG------QIVDPAAVASFAAPASLVIAHNAAFDRRF--------------- 139

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    +  + + +   ++    Q     +G    KL  LA A G    + H A  D
Sbjct: 140 --------LERFNDVFSTKPWACSLSQIDWAAEGFEGTKLAYLAQAAGF-FYDRHRAMHD 190

Query: 181 VYATLALV 188
             AT+ L+
Sbjct: 191 CLATVELL 198


>gi|55822780|ref|YP_141221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus thermophilus CNRZ1066]
 gi|55738765|gb|AAV62406.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 828

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 65/204 (31%), Gaps = 29/204 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           TN + I D E            Q   + + +    I+               D   V +T
Sbjct: 6   TNKYAIVDLEATSASSTAC-IIQVG-IVIMQNGRVIDEFAS---DVNPHQKLDNHIVHLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +     +E +R I +       CI   +N++FD        +   ++     
Sbjct: 61  GITDQQLSQAP-DFSEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  Y                  + L  L+    ++   AH A  D 
Sbjct: 112 --LRTPRVDTVELAQVFYPTLEQ-------------YNLSYLSRVLNLDLAQAHTAIEDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYDY 205
            AT  L+  + +K   L     D 
Sbjct: 157 RATGKLLLHLMDKIASLPRQTIDM 180


>gi|163797056|ref|ZP_02191011.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199]
 gi|159177572|gb|EDP62125.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199]
          Length = 230

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 13/136 (9%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +         T   +  P  D      A  + G++
Sbjct: 4   IVLDTETTGLDPDTGDRIVEIGCVEL-INHVPTGRTLHHYINPERDMPL--GAFEVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V     +  I +F       ++  +N  FD  +      R        S   
Sbjct: 61  SEFLSAYPV-FGALADEILEFL---GDAVLVIHNASFDMKFINAELRRLNRPEIPMSQA- 115

Query: 125 GNSRWDLLDVMRAIYA 140
                D + + R  Y 
Sbjct: 116 ----LDTVQLARRKYP 127


>gi|124023602|ref|YP_001017909.1| DNA polymerase III subunit epsilon [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963888|gb|ABM78644.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9303]
          Length = 321

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 29/193 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    +I D ET G D    +  +   +        + +   F      +      A  I
Sbjct: 87  LPEMLLIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPVETN-----AAESI 141

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I P +  R      +            +  ++  +N  FD  +               
Sbjct: 142 NRI-PAEVTRLDQPWRQGLDYFQALLDAAD--LLVAHNAGFDRQWFGK------------ 186

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L  +   +  + + I WP      +   ++DLALA G+    AH A  D
Sbjct: 187 ---------DQLPAVSKPWLCTMEDIAWPVDRQLRSRPSVRDLALAYGVPVWAAHRALTD 237

Query: 181 VYATLALVWLIRE 193
                 +    ++
Sbjct: 238 CIYLAEVFARCKD 250


>gi|56698700|ref|YP_169077.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3]
 gi|56680437|gb|AAV97103.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3]
          Length = 241

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 58/209 (27%), Gaps = 40/209 (19%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V     W  I +   +      + +   EA  + GI 
Sbjct: 4   IVLDTETTGFDPETGDRIVEIGAV---ELWNHIATGNTYHQYINPERMMPAEAFGVHGIG 60

Query: 65  PQKAL--RDGVV----------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           P      +               A+  +    F +      +  +N  FD  +       
Sbjct: 61  PDILEPPQQPEPGQVTLRDKPVFAKVGQAFRDFVADS---HLVIHNASFDMKFLNAELRW 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                  +     +   D L + R  +  SP                L  L    GI++ 
Sbjct: 118 MGLPEIPF-----DRAIDTLGMARRKFPGSPAT--------------LDALCRRFGIDNS 158

Query: 173 NA--HDAKADVYATLALVWLIREKKPKLF 199
           N   H A  D      +   +   K   F
Sbjct: 159 NRVLHGALLDAEILAEVYLELIGGKQPDF 187


>gi|23500370|ref|NP_699810.1| exonuclease [Brucella suis 1330]
 gi|161620685|ref|YP_001594571.1| exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|254702995|ref|ZP_05164823.1| exonuclease, RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|260568091|ref|ZP_05838560.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|23463988|gb|AAN33815.1| exonuclease, putative [Brucella suis 1330]
 gi|161337496|gb|ABX63800.1| Exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154756|gb|EEW89837.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
          Length = 224

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D    P+A  + 
Sbjct: 13  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDS--SPQAEAVH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 69  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                  +  +D  R ++                 S KL       G     + H A  D
Sbjct: 123 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARMGHRHGALED 165

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    +     
Sbjct: 166 AYLTAGLYLHQQGVAKP 182


>gi|33862659|ref|NP_894219.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9313]
 gi|33634575|emb|CAE20561.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9313]
          Length = 309

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 29/193 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    +I D ET G D    +  +   +        + +   F      +      A  I
Sbjct: 75  LPEMLLIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPVETN-----AAESI 129

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I P +  R      +            +  ++  +N  FD  +               
Sbjct: 130 NRI-PAEVTRLDQPWRQGLDYFQALLDAAD--LLVAHNAGFDRQWFGK------------ 174

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L  +   +  + + I WP      +   ++DLALA G+    AH A  D
Sbjct: 175 ---------DQLPAVSKPWLCTMEDIAWPVDRQLRSRPSVRDLALAYGVPVWAAHRALTD 225

Query: 181 VYATLALVWLIRE 193
                 +    ++
Sbjct: 226 CIYLAEVFARCKD 238


>gi|297195480|ref|ZP_06912878.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297152819|gb|EFH32011.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 241

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 7/109 (6%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  D          +            P A+ + G+T   
Sbjct: 12  FDTETTGVDVEEDRIVSAAVVVQDSPG---GRPRITRWLVNPGVPVPPGAIEVHGLTDDH 68

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
             R+G   A     I +  +        ++  N   FD         R+
Sbjct: 69  LQRNGRWPAPVMEEIARSLAEQCAAGRPLVVMNAP-FDLTLLDRELRRH 116


>gi|223946833|gb|ACN27500.1| unknown [Zea mays]
 gi|224030613|gb|ACN34382.1| unknown [Zea mays]
          Length = 315

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 65/214 (30%), Gaps = 28/214 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G     DR  +FA VR D    K  + +     P  D     +  ++ GI
Sbjct: 114 TILVFDIETTGFSRRDDRIIEFA-VR-DLMGGKNSTFQTLI-NPEKDV----KNTYVHGI 166

Query: 64  TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                 R  V    E    + Q+             + +N   FD  +    F R   + 
Sbjct: 167 NNSMLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEM 226

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176
                       D L + + +           S     +S  L+ L     I    +AH 
Sbjct: 227 -----PGDWLFVDTLPIAKQL---------VDSNGSKLSSVSLKFLRERYKIPLTGSAHR 272

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
           A  DV     ++  +  +       L +   +  
Sbjct: 273 AMQDVTTLSYVLQKLTFELKLTVPQLLEKSFRAS 306


>gi|210620723|ref|ZP_03292209.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
 gi|210155224|gb|EEA86230.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
          Length = 179

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 26/190 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F++ D ET G +          G+   R  + + S   F      +    P    +TGI+
Sbjct: 13  FIVVDLETTGLNPFEGNEIIEIGITEIRNGKIVRSYSRF---VKPEQEIPPFITELTGIS 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +    +  +E +   R  +F     +  I  +N +FD  +      +   +  +     
Sbjct: 70  NEMVANEDTIE-QVLPRFRKFI---GSNTIIAHNAKFDIKFLNYYLNKLGLEEIK----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +  +  +   S  G +         + KL       GIE+ NAH A +D  AT
Sbjct: 121 -----DYICTLELLKKVSSYGGK---------NKKLATACEYYGIENKNAHRASSDTQAT 166

Query: 185 LALVWLIREK 194
             L   IR+K
Sbjct: 167 AELFLKIRDK 176


>gi|212723090|ref|NP_001131224.1| hypothetical protein LOC100192533 [Zea mays]
 gi|194690922|gb|ACF79545.1| unknown [Zea mays]
          Length = 315

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 65/214 (30%), Gaps = 28/214 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G     DR  +FA VR D    K  + +     P  D     +  ++ GI
Sbjct: 114 TILVFDIETTGFSRRDDRIIEFA-VR-DLMGGKNNTFQTLI-NPEKDV----KNTYVHGI 166

Query: 64  TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                 R  V    E    + Q+             + +N   FD  +    F R   + 
Sbjct: 167 NNSMLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEM 226

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176
                       D L + + +           S     +S  L+ L     I    +AH 
Sbjct: 227 -----PGDWLFVDTLPIAKQL---------VDSNGSKLSSVSLKFLRERYKIPLTGSAHR 272

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
           A  DV     ++  +  +       L +   +  
Sbjct: 273 AMQDVTTLSYVLQKLTFELKLTVPQLLEKSFRAS 306


>gi|324995504|gb|EGC27416.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK678]
          Length = 814

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  +     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLSQAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAESLFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREK 194
            AD  AT  L   I++K
Sbjct: 152 LADAQATAQLFLKIQDK 168


>gi|189500246|ref|YP_001959716.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           BS1]
 gi|189495687|gb|ACE04235.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
           BS1]
          Length = 232

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 21/202 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G D + D       V ++     I+  + F      D + + +AV   G+ 
Sbjct: 45  YVVFDTETTGFDTSRDLVISIGAVAINALH--IDVQDSFEVLIRRDNVGEKDAVTTHGLL 102

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +    +G  E E    +  F +  +T ++   +  FD      + +R +          
Sbjct: 103 CKDL-DEGGEEQE---SLDAFINYVSTGVLVAQHADFDVAMINRMLHRYYGFELFNH--- 155

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADVY 182
                     +    + +    + P  +    S  ++L  L     I   + H A  D +
Sbjct: 156 ----------VIDTASLAKRLEKGPYFNLAHKSGEYRLDMLLDRYNIRMHDRHTAAGDAF 205

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
            T  L  ++  K          
Sbjct: 206 LTARLFQMLLAKAEHAGIRTLK 227


>gi|260768304|ref|ZP_05877238.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260616334|gb|EEX41519.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 193

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 12/193 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G  V  D       V    +   +   + +  +P      D  ++ I GIT
Sbjct: 3   FVAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRPR--QKLDEHSIVIHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +       + S    +        ++  +  R +  +      R   +   +   +
Sbjct: 61  HNDIMDAP----DLSDIFEEVLEHLAGRVLVVHYHRIEREFLDRALKRRIGEGIEFPVID 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 L+        ++    + P       S +L    +  G+     H A  D  AT
Sbjct: 117 TMEIETLIQKRLTAGLWNRLRGKKPE------SVRLGQSRMRYGLPAYTPHHALTDAIAT 170

Query: 185 LALVWLIREKKPK 197
             L+         
Sbjct: 171 AELLQAQIAHHYS 183


>gi|261369077|ref|ZP_05981960.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum
           variabile DSM 15176]
 gi|282568762|gb|EFB74297.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum
           variabile DSM 15176]
          Length = 318

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 70/216 (32%), Gaps = 26/216 (12%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G D   D   Q + + +D     ++S    + KP       PEA  +  IT + 
Sbjct: 122 IDIETTGLDFNQDEILQVSILDIDTGEVLLDS----YVKPY-FTEDWPEARRVNHITKEM 176

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                 +  E   R++Q  +   T  +GYN   FD+ +                   G S
Sbjct: 177 VCNAPYI-YELLPRLNQVLAQVKTI-VGYNFTGFDNGFLT---------------RYGAS 219

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYATL 185
             D   V      F+    ++  +        L   A   G +     AH++ AD  AT 
Sbjct: 220 FNDETIVEDLSNIFAAIYGEFSPKHGDFKFKNLSTCADYFGYDWGEETAHNSLADCRATA 279

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
                 +E+  +      +  +K       +  +  
Sbjct: 280 FCYKKTQEEMYQELYQ--ENIHKRDCGFFDESYDAC 313


>gi|320547177|ref|ZP_08041471.1| DNA polymerase III [Streptococcus equinus ATCC 9812]
 gi|320448164|gb|EFW88913.1| DNA polymerase III [Streptococcus equinus ATCC 9812]
          Length = 827

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 74/197 (37%), Gaps = 29/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  + + D E  G   A+    Q   V +    + +++ +                + +T
Sbjct: 6   SQKYAVVDLEATGAH-AMAEIIQVGIVII-ENKKIVKTYQT---DVNPHEPLTEHIINLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++  +     ++ +++I+   S    C+   +N++FD        +   Y+     
Sbjct: 61  GITDEQLAKAP-DFSQVAQKIYNMISD---CVFVAHNVKFDANLLAEKLFLEGYE----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R  L+D +     F P   +          + L  LA    ++  +AH A +D 
Sbjct: 112 -----LRTPLVDTVELSQVFYPTLEK----------YTLGHLADVLQLDLTDAHTAISDA 156

Query: 182 YATLALVWLIREKKPKL 198
           YAT  L+  ++EK   +
Sbjct: 157 YATAQLLLKLKEKMASM 173


>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 345

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 49/185 (26%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR       ++D      +           +  P P  V+I G+T
Sbjct: 40  YAVVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTL---VNPERDPGP--VWIHGLT 93

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + S  +    +     ++  +N  FD       + R            
Sbjct: 94  TGVLKDAPL-FKDISDELSARLADR---VLVAHNAAFDWSMLAREYARA----------- 138

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   + +  +                  + KL+ LA   G+    AH A  D    
Sbjct: 139 --------ERVAPVRQRLCTIALSKELGLPLPNHKLESLAAHFGVVQERAHHALDDARVL 190

Query: 185 LALVW 189
                
Sbjct: 191 AEAFR 195


>gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 324

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 49/185 (26%), Gaps = 29/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR       ++D      +           +  P P  V+I G+T
Sbjct: 19  YAVVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTL---VNPERDPGP--VWIHGLT 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + S  +    +     ++  +N  FD       + R            
Sbjct: 73  TGVLKDAPL-FKDISDELSARLADR---VLVAHNAAFDWSMLAREYARA----------- 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   + +  +                  + KL+ LA   G+    AH A  D    
Sbjct: 118 --------ERVAPVRQRLCTIALSKELGLPLPNHKLESLAAHFGVVQERAHHALDDARVL 169

Query: 185 LALVW 189
                
Sbjct: 170 AEAFR 174


>gi|189183653|ref|YP_001937438.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180424|dbj|BAG40204.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Ikeda]
          Length = 222

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 28/198 (14%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
               ++ D ET G D     R  +   V +D    +I     F      +     EA  +
Sbjct: 1   MQRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIR--NTFHYYINPERDISKEAYKV 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G++            E      QF    +   +  +N  FD  +  +  +R    +   
Sbjct: 59  HGLSRDFLSDKPK-FREIVDEFLQFI---DGAQLIMHNANFDMQFLNSELFRIRKSAIPN 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R  +                    L  L     I+  +   H A 
Sbjct: 115 T-----CVIDTLTLARKRFP--------------KERVNLDALCYKFRIDTSDRHLHGAL 155

Query: 179 ADVYATLALVWLIREKKP 196
            D      +   +     
Sbjct: 156 KDAKLLALVYGRMMRGMQ 173


>gi|160901390|ref|YP_001566972.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160366974|gb|ABX38587.1| Exonuclease RNase T and DNA polymerase III [Delftia acidovorans
           SPH-1]
          Length = 212

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 56/188 (29%), Gaps = 15/188 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G DV  D+      VR+    E+I S+E              ++V I  +  
Sbjct: 35  VALDCETTGLDVRCDQIISIGAVRIV--GERILSSERLELLVRPSRSVPGDSVRIHRLRE 92

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +   R G+   +   ++ +F    +  ++GY        +   +  R           N 
Sbjct: 93  RDLAR-GLAIEDALAQLLRFI--GSRPLVGYY-----LEFDVAMIERVLRPWLGTGLPNE 144

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L          P   Q P         +   L    G+    AHDA  D     
Sbjct: 145 RIEVSALYYDHRFRQLLPWQQQAPE-----IDLRFATLMANLGLPQREAHDALNDAVMAA 199

Query: 186 ALVWLIRE 193
                +R 
Sbjct: 200 LAFIKLRR 207


>gi|332523978|ref|ZP_08400230.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332315242|gb|EGJ28227.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 820

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 31/204 (15%)

Query: 4   HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + + D E    +   D R  Q   V V    + I S +                  +TG
Sbjct: 7   KYAVIDLEAT--NAGSDARIIQIGIVIV-EDKKIINSFQT---DINPHSKLSEHIKSLTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT Q+        ++ +  I +       C+   +N++FD        +   +D      
Sbjct: 61  ITDQQLATAPE-FSQVAGEIFELIKD---CVFVAHNVKFDANLLSEALFFEGFDLLT--- 113

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R D +++ +  +                  + L  LA    +   +AH A +D  
Sbjct: 114 ----PRVDTVELAQVFF-------------PNLEKYNLGHLAKNMDLNLSHAHTAISDAL 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYR 206
           AT  L   I++K   L     +  
Sbjct: 157 ATAKLFIKIQKKIESLPRETLEMM 180


>gi|261346344|ref|ZP_05973988.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM
           4541]
 gi|282565658|gb|EFB71193.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM
           4541]
          Length = 253

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 63/223 (28%), Gaps = 32/223 (14%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHNIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +      V  AE +    +F       I   +N  FD  +    F +        
Sbjct: 66  HGISDEFLQDKPV-FAEIADEFIEFIRGAELII---HNAPFDIGFMDYEFRKLNRGIPPT 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 S  D L + R I+                    L  L     I++     H A 
Sbjct: 122 --AEFCSITDSLVLARKIFPG--------------KRNNLDALCDRYLIDNSKRTLHGAL 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            D      +   +   +  L        +   +++  +IQ + 
Sbjct: 166 LDAEILSDVYLAMTGGQTSL--AFSMDSDSKNIQQANEIQRIQ 206


>gi|83950782|ref|ZP_00959515.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
 gi|83838681|gb|EAP77977.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
          Length = 231

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 53/198 (26%), Gaps = 29/198 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V     +  + + E +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFDPHSGDRIVEIGAV---ELFNHMPTGETYHQYINPERSMPQEAFQVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V      +    F       I   +N  FD  +              W    
Sbjct: 61  DDFLRDKPV-FKRIGQAFLDFIGDAKLII---HNAAFDMKFLNAELGWMGLPQIPWEQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L++ R  +  SP                L  L     I++ +   H A  D  
Sbjct: 116 ----IDTLEIARRRFPGSPA--------------SLDALCRRFNIDNSSRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLFE 200
               +   +   +   F 
Sbjct: 158 ILAEVYLELIGGRQPDFS 175


>gi|127510985|ref|YP_001092182.1| DNA polymerase III subunit epsilon [Shewanella loihica PV-4]
 gi|126636280|gb|ABO21923.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
          Length = 239

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 55/187 (29%), Gaps = 12/187 (6%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D+ET G +V  D       V    +   +   + +  +P +      E+V I GIT    
Sbjct: 53  DFETTGLNVDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPREQL--AEESVIIHGITHSDI 110

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
           L       + S    Q        I+  +    +  +      R      R         
Sbjct: 111 LDAP----DLSAIFEQVLEQMAGKIMVVHYQAIERLFLERALIR------RIHQGIEFPL 160

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            D + +   I      G+    + D   S +L       G+     H+A  D  AT  L+
Sbjct: 161 IDTMALESEIQKRQHGGLLQRLKGDKPGSVRLGQSRSRYGLPSYPPHNALTDAIATAELL 220

Query: 189 WLIREKK 195
                  
Sbjct: 221 QAQIAHH 227


>gi|325912075|ref|ZP_08174473.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners
           UPII 143-D]
 gi|325476025|gb|EGC79193.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners
           UPII 143-D]
          Length = 933

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 67  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I +K   L     +         L +   +   V           N  LI
Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220


>gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
 gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
          Length = 255

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 31/203 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G              +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRPVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          EF      F    N   +  +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKP----EFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
            D      +  ++   +  LF+ 
Sbjct: 164 LDAEILADVYLMMTGGQTNLFDE 186


>gi|332359593|gb|EGJ37411.1| DNA polymerase III [Streptococcus sanguinis SK49]
          Length = 814

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLNDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREK 194
            AD  AT  L   I++K
Sbjct: 152 LADAQATAQLFLKIQDK 168


>gi|294627921|ref|ZP_06706500.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666553|ref|ZP_06731794.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292597835|gb|EFF41993.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603697|gb|EFF47107.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 244

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V      E+  S   F      D   +P A  +TG+T
Sbjct: 4   IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F   + +F +  +   +  +N  FD  +  N         +      
Sbjct: 61  LEFLADKPL----FGEVVDEFLAYIDGAELIIHNAAFDLGFLDNEL--ALLGDHYGRIVE 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L + R  Y    +               L  L    G++  H   H A  D  
Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILADVYIALTSGQEEI 176


>gi|21241847|ref|NP_641429.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107228|gb|AAM35965.1| DNA polymerase III epsilon chain [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 244

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V      E+  S   F      D   +P A  +TG+T
Sbjct: 4   IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F   + +F +  +   +  +N  FD  +  N         +      
Sbjct: 61  LEFLADKPL----FGEVVDEFLAYIDGAELIIHNAAFDLGFLDNEL--ALLGDHYGRIVE 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L + R  Y    +               L  L    G++  H   H A  D  
Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILADVYIALTSGQEEI 176


>gi|78046646|ref|YP_362821.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925275|ref|ZP_08186679.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
 gi|78035076|emb|CAJ22721.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544321|gb|EGD15700.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
          Length = 244

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V      E+  S   F      D   +P A  +TG+T
Sbjct: 4   IILDTETTGLEWRKGNRVVEIGAV---ELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F   + +F +  +   +  +N  FD  +  N         +      
Sbjct: 61  LEFLADKPL----FGEVVDEFLAYIDGAELIIHNAAFDLGFLDNEL--ALLGDHYGRIVE 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L + R  Y    +               L  L    G++  H   H A  D  
Sbjct: 115 RATVVDTLMMARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILADVYIALTSGQEEI 176


>gi|284042646|ref|YP_003392986.1| exonuclease RNase T and DNA polymerase III [Conexibacter woesei DSM
           14684]
 gi|283946867|gb|ADB49611.1| Exonuclease RNase T and DNA polymerase III [Conexibacter woesei DSM
           14684]
          Length = 259

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 54/213 (25%), Gaps = 16/213 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 +D ET G D   DR    A V +          +               A  + 
Sbjct: 1   MRRLAAFDIETTGIDPQSDRIVT-AAVSLAGDARPTVDHDWL---VDPGVEIPAGATAVH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           GIT   A  +G   AE    I    +    +   +   N RFD         R+      
Sbjct: 57  GITTDHARAEGRASAEAVEEITAVLAAQLLDHVPVIAFNARFDLTCLDREARRHGVVPLV 116

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                 +    +   +                        L  +     +    AH A A
Sbjct: 117 DRVGGPDGLIVVDPFVLDKQ----------FDRYRRGKRTLGAVCEHYRVRLDAAHTANA 166

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
           D  A   + W + +   +L +      +  Q+ 
Sbjct: 167 DAIAAARVAWRLAQAIAELRQTELRALHGQQVL 199


>gi|269216510|ref|ZP_06160364.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122]
 gi|269130039|gb|EEZ61121.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122]
          Length = 1045

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 56/200 (28%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G     D   Q A  R+ +Q   +E    F            E   +T I  
Sbjct: 58  VVLDTETTGFSQNHDELTQIAAARM-KQGRIVEWFVTF---VNPGKPIPEEVARLTDIHD 113

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +        +    +      +      I  +N  FD  +              W     
Sbjct: 114 EDVADAPSPDDARIQ----LAAFVGDSCIVAHNAAFDKGFCTKSQGGAPLSDNLW----- 164

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D LD+ R                    S +L D+  A        H A ADV A  
Sbjct: 165 ---IDSLDLARIA-------------LPRLKSHRLIDIVKAFDAPVST-HRADADVEALC 207

Query: 186 ALVWLIREKKPKLFEYLYDY 205
           A   ++     K+ + L  Y
Sbjct: 208 AAYRIMLAAIAKMPKDLVSY 227


>gi|46205666|ref|ZP_00048224.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 187

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 50/177 (28%), Gaps = 19/177 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G DV +DR    A V       +  +T V             EA  I GIT   
Sbjct: 14  LDTETTGLDVDVDRVVTAALV-----LREPGATHVRTWLLDPGVEIPAEATGIHGITNAH 68

Query: 68  ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A   G   A     I      +  +   +   N  FD         R+   +       G
Sbjct: 69  ATAHGSAPAVALDEIATLVVDAQRDGVPLVAYNAAFDLAILDTELVRHGLPTLAA--RLG 126

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKADV 181
                +LD +    A                  +L DL     + +    H A  DV
Sbjct: 127 RPVRPVLDPLVLDRA---------WDPARDGKRRLVDLCARYEVLDVGRLHTADGDV 174


>gi|182439793|ref|YP_001827512.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780457|ref|ZP_08239722.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
 gi|178468309|dbj|BAG22829.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660790|gb|EGE45636.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
           griseus XylebKG-1]
          Length = 241

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 36/120 (30%), Gaps = 11/120 (9%)

Query: 1   MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M + F      +D ET G DV  DR    A V  D          V            P 
Sbjct: 1   MMHWFEGPLAAFDTETTGVDVEQDRIVSAALVAQDTAG---GRVRVTRWLVNPGVPVPPG 57

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
           A  + G+T     R+G   A     I +  +        ++  N   FD         R+
Sbjct: 58  ATEVHGLTDDHLQRNGRWPAPVMDEIARALAESCATGRPLVVMNAP-FDLTLLDRELKRH 116


>gi|82702745|ref|YP_412311.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
 gi|82410810|gb|ABB74919.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 234

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 53/195 (27%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G +  L  R  +   V +  +         +      +   +  A+ + GIT
Sbjct: 4   IFIDTETTGLEPKLGHRIIEIGAVEMMSRRLTGRRFHHY---LNPEREIEEGALQVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  L       +F+  +H+     +   +  +N  FD  +  +        +       
Sbjct: 61  SEFLLDK----RKFADVVHELLEFIDGAELIMHNAAFDVAFLDHELGLANLPA------- 109

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                     +        D ++            L  L     +++     H A  D  
Sbjct: 110 ----------LCECCHSVTDTLKMAKELFPGKRNSLDALCERYEVDNSRRALHGALLDAE 159

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 160 LLAEVYLAMTRGQES 174


>gi|329920271|ref|ZP_08277055.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus iners SPIN 1401G]
 gi|328936316|gb|EGG32764.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus iners SPIN 1401G]
          Length = 933

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 67  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I EK   L     +         L +   +   V           N  LI
Sbjct: 164 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220


>gi|145589210|ref|YP_001155807.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047616|gb|ABP34243.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 236

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 59/204 (28%), Gaps = 27/204 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           VI D ET G + A  DR  +   V V       +    F      +   D  A  + G++
Sbjct: 4   VILDTETTGLNPATGDRVIEIGCVEV-IDRRLTDR--TFHYYINPERDIDAGAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V     + ++ +F    +   I  +N  FD  +  N F       +      
Sbjct: 61  REFLSDKPV-FGNIAEQLIEFV---DGAEIVIHNAAFDLGFLDNEFALLKRPPF---RGL 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADVY 182
            +   D L   R ++                    L  L        +H   H A  D  
Sbjct: 114 ASKVIDTLLDARQMFPG--------------KRNSLDALCERFSISNKHRTLHGALLDAQ 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYR 206
               +   +   +  L   L DY 
Sbjct: 160 LLAEVYIAMTRGQEDLSIDLIDYT 183


>gi|332362812|gb|EGJ40606.1| DNA polymerase III [Streptococcus sanguinis SK355]
          Length = 814

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREK 194
            AD  AT  L   I++K
Sbjct: 152 LADAQATAQLFLKIQDK 168


>gi|311896766|dbj|BAJ29174.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 233

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 56/192 (29%), Gaps = 28/192 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + + + D E  GR     R  + A V++D                       P    + 
Sbjct: 1   MSGYAVVDVEATGRSPWRHRVVEVAVVQLDAGLRTEREFATL---VDPGGPVGP--THVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI     L       + + R+ +  +     ++  +++  D  +    F R         
Sbjct: 56  GIAQADVLGAPR-FRQIAPRLLELLA---GRVLVGHHVTCDRAFLEREFARIGV------ 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 +  LL  MR              +   A  + L     A G+    AH A  D 
Sbjct: 106 ---ALPQVPLLCTMRLAR----------RQLPEAGGYGLSACVDAAGLGWFPAHTALGDA 152

Query: 182 YATLALVWLIRE 193
            AT+ L+   R 
Sbjct: 153 RATVELLRHCRR 164


>gi|327469619|gb|EGF15088.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK330]
          Length = 814

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 32/207 (15%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
            AD  AT  L   I++K   L + L +
Sbjct: 152 LADAQATAQLFLKIQDKIKSLPKVLVE 178


>gi|329298346|ref|ZP_08255682.1| ribonuclease T [Plautia stali symbiont]
          Length = 222

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 63/200 (31%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D       + T  F  +P +  + +PEA+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEIAATTLKMDEDGWLHRDETLHFHVEPFEGAILNPEALAFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGTKDSGCNRAIIVAHNATFDHNFLMATAERTGMK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L     A GI+     A
Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACKAAGIDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 181 HSALYDTKQTATLFCELVNR 200


>gi|312871734|ref|ZP_07731822.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           3008A-a]
 gi|311092676|gb|EFQ51032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           3008A-a]
          Length = 933

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 67  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I +K   L     +         L +   +   V           N  LI
Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220


>gi|312875685|ref|ZP_07735686.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2053A-b]
 gi|311088939|gb|EFQ47382.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2053A-b]
          Length = 933

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 67  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I EK   L     +         L +   +   V           N  LI
Sbjct: 164 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220


>gi|58616403|ref|YP_195533.1| DNA polymerase III subunit epsilon [Azoarcus sp. EbN1]
 gi|56315865|emb|CAI10509.1| putative exonuclease [Aromatoleum aromaticum EbN1]
          Length = 342

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 57/207 (27%), Gaps = 38/207 (18%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQ------WEKIESTEVFFCKPADDYLPDPEAVFITG 62
           D ET G     D+      V  +           +E    F            E   +TG
Sbjct: 47  DVETTGLKKDSDKIIDIGLVLAEFDRVSGQVLRVLERYSGFE---DPGRPIPEEITRLTG 103

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  +  L       +   R+    +  +  ++  +N  FD  +                 
Sbjct: 104 IRDEDVLEQ--TFDDA--RVEALIARAD--LVVAHNAPFDRGF----------------- 140

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  +L         ++    + P       S KL+ LA   G     AH A  D  
Sbjct: 141 ------LELRFPSFQKKWWACSQREAPWSQMMTGSTKLEWLAFQIGGCFYEAHRALVDAE 194

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKN 209
            TL ++  +      +  +L +   + 
Sbjct: 195 VTLFILAQMGPGGRPILSHLLEVSGRK 221


>gi|54309681|ref|YP_130701.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914119|emb|CAG20899.1| putative DNA polymerase III, epsilon subunit [Photobacterium
           profundum SS9]
          Length = 239

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 53/193 (27%), Gaps = 12/193 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +   D       V        I   + +  +P      + ++V I  IT
Sbjct: 49  FVAMDFETTGLNAKKDGIITIGLVPFTLNRVYINRAQHWTVRPR--QKLNEQSVVIHNIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               L       + S  I    +     ++  +  R +  +          +        
Sbjct: 107 HNDILDAP----DLSEVIEPVLAALAGRVVVVHYRRIEREFLDRALKARIKEGIE----- 157

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L++   I      G     +     S +L       G+     H A  D  AT
Sbjct: 158 -FPVIDTLELEAQIQQRLNGGFWNKLKGKKPQSVRLAQARKRYGLPAYTPHHALTDAIAT 216

Query: 185 LALVWLIREKKPK 197
             L+         
Sbjct: 217 AELLQAQIAYHYD 229


>gi|163844775|ref|YP_001622430.1| DNA polymerase III epsilon subunit family exonuclease [Brucella
           suis ATCC 23445]
 gi|163675498|gb|ABY39608.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           suis ATCC 23445]
          Length = 224

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 13  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 69  GFDNWMTCYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDML--- 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                  +  +D  R ++                 S KL       G     + H A  D
Sbjct: 123 ---DQPVYCTMDGARRLWRGD--------------STKLDHCLAKIGLARTGHRHGALED 165

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    +     
Sbjct: 166 AYLTAGLYLHQQGVAKP 182


>gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
 gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
          Length = 611

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 28/186 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G      R  Q A  +V+       S             P P  V + G+T
Sbjct: 22  YAVVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSL---LDPGVDPGP--VHVHGLT 76

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++         + +  + +        ++  +N RFD  +      R           +
Sbjct: 77  RERLAGAPQ-YQDVAGTLDELVRDR---VLVAHNARFDWGFLAAESDRARAP------LS 126

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            + R   L + R               D   +  +L  +A   G++   AHDA+ DV   
Sbjct: 127 VDRRLCTLALSR-------------RLDLPVSDLRLATVAAHWGVQQRRAHDAEDDVRVL 173

Query: 185 LALVWL 190
           + ++  
Sbjct: 174 VEVLRH 179


>gi|327473768|gb|EGF19186.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK408]
          Length = 814

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREK 194
            AD  AT  L   I++K
Sbjct: 152 LADAQATAQLFLKIQDK 168


>gi|302191304|ref|ZP_07267558.1| Rad3-related DNA helicase [Lactobacillus iners AB-1]
          Length = 933

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 67  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I EK   L     +         L +   +   V           N  LI
Sbjct: 164 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220


>gi|312278202|gb|ADQ62859.1| ATP-dependent DNA helicase [Streptococcus thermophilus ND03]
          Length = 828

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 65/204 (31%), Gaps = 29/204 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           TN + I D E            Q   + + +    I+               D   V +T
Sbjct: 6   TNKYAIVDLEATSASSTAC-IIQVG-IVIMQNGRVIDEFAS---DVNPHQKLDNHIVHLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +     +E +R I +       CI   +N++FD        +   ++     
Sbjct: 61  GITDQQLSQAP-DFSEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  Y                  + L  L+    ++   AH A  D 
Sbjct: 112 --LRTPRVDTVELAQVFYPTLEQ-------------YNLSYLSRVLNLDLAQAHTAIEDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYDY 205
            AT  L+  + +K   L     D 
Sbjct: 157 RATGKLLLHLMDKIASLPRQTIDM 180


>gi|306825581|ref|ZP_07458920.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431942|gb|EFM34919.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 830

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 33/198 (16%)

Query: 1   MTN----HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M N     +V+ D E      +  +  Q   V +    E I                D  
Sbjct: 1   MMNARNDRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIINQYAT---DVNPHEPLDSH 55

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TG+T ++        ++ + +I +        I   +N++FD        +     
Sbjct: 56  IKELTGLTDRRLAAAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-- 109

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                ++    R D +++ + +Y                  + L  L    GIE  +AH 
Sbjct: 110 -----YELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHT 151

Query: 177 AKADVYATLALVWLIREK 194
           A +D  AT  L+  +R+K
Sbjct: 152 ALSDAQATAELLLYMRQK 169


>gi|312874151|ref|ZP_07734185.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2052A-d]
 gi|311090221|gb|EFQ48631.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2052A-d]
          Length = 933

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 67  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I +K   L     +         L +   +   V           N  LI
Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220


>gi|317047907|ref|YP_004115555.1| ribonuclease T [Pantoea sp. At-9b]
 gi|316949524|gb|ADU68999.1| ribonuclease T [Pantoea sp. At-9b]
          Length = 222

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 68/213 (31%), Gaps = 30/213 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D       + T  F  +P +  + +PEA+  TG
Sbjct: 20  VVIDVETAGFNAKTDALLEIAATTLKMDDDGWLHCDETLHFHVEPFEGAILNPEALAFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKMVRKGMKDSHCNRAIIVAHNATFDHNFLMAAAERVGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L     A G++     A
Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACKAAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
           H A  D   T  L   +  +  +L  +   Y +
Sbjct: 181 HSALYDTEQTAILFCELVNRWKRLGGWPLAYSD 213


>gi|225075242|ref|ZP_03718441.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
           NRL30031/H210]
 gi|224953417|gb|EEG34626.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
           NRL30031/H210]
          Length = 245

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   +I D ET G      DR  +FAG+ +    +  +S    +  P  D     EA  
Sbjct: 1   MSQRQIILDTETTGLYPENGDRLVEFAGLEM-INRQMTDSNLHLYVHPERDM--PEEAAK 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          A+  ++I  F       I   +N +FD  +    F R    S 
Sbjct: 58  VHGLTIEVLEAKNAPPFAQVGKQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPSI 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G    D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCKVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRQQ 176


>gi|325694226|gb|EGD36142.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK150]
          Length = 814

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLNDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREK 194
            AD  AT  L   I++K
Sbjct: 152 LADAQATAQLFLKIQDK 168


>gi|315653552|ref|ZP_07906472.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195]
 gi|315488914|gb|EFU78556.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195]
          Length = 936

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 14  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 70  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 121

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 122 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 166

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I EK   L     +         L +   +   V           N  LI
Sbjct: 167 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 223


>gi|148284671|ref|YP_001248761.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Boryong]
 gi|146740110|emb|CAM80283.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
           Boryong]
          Length = 222

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 51/198 (25%), Gaps = 28/198 (14%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
               ++ D ET G D     R  +   V +D    +I     F      +     EA  +
Sbjct: 1   MQRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIR--NTFHYYINPERDISKEAYKV 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G++            E      QF        +  +N  FD  +  +  +R    +   
Sbjct: 59  HGLSRDFLSDKPK-FREIVDEFLQFIDRAQ---LIMHNANFDMQFLNSELFRIRKSAIPN 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R  +                    L  L     I+  +   H A 
Sbjct: 115 T-----CVIDTLTLARKRFP--------------KERVNLDALCYKFRIDTSDRHLHGAL 155

Query: 179 ADVYATLALVWLIREKKP 196
            D      +   +     
Sbjct: 156 KDAKLLALVYGRMMHGMQ 173


>gi|319954745|ref|YP_004166012.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola
           DSM 14237]
 gi|319423405|gb|ADV50514.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola
           DSM 14237]
          Length = 220

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 61/188 (32%), Gaps = 22/188 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G D + DR      V+ V +Q    +  EVF  +         +A  I GI
Sbjct: 36  YTVLDTETTGFDYSNDRILCIGAVKLVQQQIAIRDGFEVFVTQQVYGK----DAAPIHGI 91

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                    V        + QF +     +I  ++  FD     N   RN     + ++ 
Sbjct: 92  ----LKNSTVPRVTELEALEQFITYVGNSVIIAHHAIFDLNMINNALLRNGLPELKNTYL 147

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + +                   I   +      ++ L +LA    I   + H A  D Y 
Sbjct: 148 DTS-------------HLYKKTIIRSNLITRKENYTLDELADKFSISKKDRHTAMGDAYI 194

Query: 184 TLALVWLI 191
           T  L   I
Sbjct: 195 TAILFLKI 202


>gi|259500615|ref|ZP_05743517.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335]
 gi|259167999|gb|EEW52494.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335]
          Length = 936

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 14  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 70  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 121

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 122 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 166

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I EK   L     +         L +   +   V           N  LI
Sbjct: 167 TAKMLLKIIEKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 223


>gi|171057726|ref|YP_001790075.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170775171|gb|ACB33310.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 241

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 27/222 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G      DR  +   V +                         EAV + G+T
Sbjct: 4   IFLDTETTGLSHESGDRVVELGCVEM-VNRRLTGR--NLHHYFNPQRANHEEAVRVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +  +  ++    F        I  +N  FD  +      R  +   +     
Sbjct: 61  DAFLADKPL-FSAVAQEFVDFVRDAE---IIAHNANFDVGFLDAELKRIGHPPLK---QL 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +    +               L  L     +++ +   H A  D  
Sbjct: 114 VDKVTDSLVMAREQFPGKAN--------------SLDALCRRLEVDNTSRTVHGALLDAG 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
               +   +   +  L       +++ Q+ + +   ++T  V
Sbjct: 160 LLAEVYIRMTRGQNSLVIDDSPVQSEQQVEQPLIAVDLTAFV 201


>gi|30387346|ref|NP_848425.1| hypothetical protein CfMNPVgpORF114 [Choristoneura fumiferana MNPV]
 gi|30270080|gb|AAP29896.1| unknown [Choristoneura fumiferana MNPV]
          Length = 232

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 64/212 (30%), Gaps = 22/212 (10%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIEST-EVFFCKP-----ADDYLP 53
             +V  D ET G     +   +  + +   V R  +++     V  C             
Sbjct: 5   QTYVFLDLETTGLPKFQNNKTQITELSLQCVSR--KELLRPGAVRVCNKLTMCFEPTLSI 62

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFY 111
             EA+ +T ++ +        + +    I  F S      C++ YN + FD         
Sbjct: 63  SEEALALTQLSMENLNGQPKFDTKVVDCIESFLSLLASPVCLVAYNGLSFDFPILYKHLK 122

Query: 112 RNFY-------DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
            N +       D+Y   +   +               +     W   D  A SFKL DL 
Sbjct: 123 DNAFQLEVHCADAYHAMYAIIDGSGSTAMNRSKSGLVTVRQCPWKRGDRPARSFKLMDLY 182

Query: 165 LAN--GIEHVNAHDAKADVYATLALVWLIREK 194
             +   +     H A+ D    + L      +
Sbjct: 183 KTHVTQLAGDKCHRAENDCSMMVELAKKFANE 214


>gi|262277835|ref|ZP_06055628.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium
           HIMB114]
 gi|262224938|gb|EEY75397.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium
           HIMB114]
          Length = 223

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 71/217 (32%), Gaps = 26/217 (11%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F ++D ET G +    D+    +GV+V + ++ I++               PE   I  
Sbjct: 26  TFSVFDTETTGLNYNSGDKIISVSGVKV-QNFQ-IDTEGKLDEFCDPMVEITPENEQIHH 83

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ +       +  +   +   FF      ++  +N++FD  +  +       +S     
Sbjct: 84  ISNRMVKGKPNI-YDLESKFRGFFKRS---VLVAHNVKFDCNFLISNLSHTKLESRIREA 139

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKAD 180
                    LD +       PD            S++L  L     I H +   H +  D
Sbjct: 140 VK-------LDTVLYSAGVYPDL----------KSYELSALCDELNITHHDQLRHSSLGD 182

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
              T  L   + +K            +K   + L++ 
Sbjct: 183 SIITARLFIHLLKKSKAQNIKEILNISKFGQKVLLNK 219


>gi|149204383|ref|ZP_01881350.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035]
 gi|149142268|gb|EDM30315.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035]
          Length = 231

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 50/206 (24%), Gaps = 29/206 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V +            F             A  + G+ 
Sbjct: 4   IVLDTETTGFEPESGDRIVEIGAVEL-YNHMPTGR--TFHKYINPQRAMPEAAFAVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +  AE ++    F        +  +N  FD  +              W    
Sbjct: 61  DDFLRDKPL-FAEIAQEFLDFVQDAR---LVIHNAAFDMKFLNAELGWLKLPQLPWDQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  SP                L  L     I++     H A  D  
Sbjct: 116 ----VDTLAIARKKFPGSPA--------------SLDALCRRFQIDNSARTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208
               +   +   +   F        K
Sbjct: 158 ILAEVYLELIGGRQPDFVLATGPTAK 183


>gi|46201693|ref|ZP_00054536.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 230

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 54/189 (28%), Gaps = 29/189 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D  +  R  +   V +             +C P  D     EA  + G++
Sbjct: 4   IVLDTETTGFDPLSGHRLVEIGCVELFNHL-PTGEVFHRYCNPERDM--PEEAFKVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F+  +  F        +  +N  FD  +      R  + +   S   
Sbjct: 61  VEFLSDKPL----FAEIVADFLEFIGDAPLVIHNAEFDMRFINAELARLGFPALPMSRS- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D + + R  +  +                 L  L     I+  H   H A  D  
Sbjct: 116 ----IDTVMMARKKFPGAQA--------------NLDALCRRFEIDNTHRTKHGALLDSE 157

Query: 183 ATLALVWLI 191
               +   +
Sbjct: 158 LLAEVYLQL 166


>gi|312872972|ref|ZP_07733032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091494|gb|EFQ49878.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
           2062A-h1]
          Length = 933

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 67  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPFA---- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 119 --GKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I +K   L     +         L +   +   V           N  LI
Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220


>gi|296119762|ref|ZP_06838316.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295966916|gb|EFG80187.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 1149

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N F + D+E  G   A DR  +   V +D   E  ++ +    +P  +        F+  
Sbjct: 5   NKFAVVDFEATGLSAA-DRIVEIGVVLLDNNLEVEQTWDTL-VQPNREVPNS----FVHK 58

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF-YDSYRWS 121
           +T     +    E   S +        +   +  +N  F++++ R  F R         S
Sbjct: 59  LTTADLEKAPTFEG-ISAKFASLL---DGRTVVAHNASFEEHFMRQEFSRLGVLWPNYGS 114

Query: 122 W 122
           W
Sbjct: 115 W 115


>gi|289423924|ref|ZP_06425717.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289155701|gb|EFD04373.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 188

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 35/193 (18%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + N + + D ET G +   +   +   VRV      +   E              EA  +
Sbjct: 23  LKNDYTVIDIETSGLNPEKNEILELGAVRVRDN-IVVAEYEQL---IRPRKSISKEATKV 78

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G+T +  + +  VE      I  F       ++  +NI FD  + RN            
Sbjct: 79  NGLTKRMLIDEPFVE----DVIWDFKDFLGKDVLIGHNIEFDLEFIRNQL---------- 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D L + R              +       +L D+     I     H + +D
Sbjct: 125 --PIRNKYIDTLPLAR--------------KLLKIKRHRLIDICHHYKIP-EPNHRSISD 167

Query: 181 VYATLALVWLIRE 193
             AT      ++E
Sbjct: 168 CNATHLCYQKMKE 180


>gi|238022741|ref|ZP_04603167.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147]
 gi|237865944|gb|EEP67080.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147]
          Length = 464

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 29/176 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           VI D ET G     DR  + A +   +                 +         +TGI+ 
Sbjct: 25  VILDLETTGGHFYADRITELAFLHFWQ-----GKITAVQQLVQPNMPISGFVRDLTGISD 79

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +         A+F+ ++          ++  +N RFD  + R+   RN +          
Sbjct: 80  EMLQGQP-TFAQFAPQVLPLLR---GSLLIAHNSRFDYTFLRHECRRNGFAFATAG---- 131

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 L  ++      P+  +            L  +   +G+   + H A +DV
Sbjct: 132 ------LCSVQLSRKLYPEFFK----------HNLDSIIERHGLAVASRHRAMSDV 171


>gi|195646046|gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays]
          Length = 315

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 65/214 (30%), Gaps = 28/214 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G     DR  +FA VR D    K  + +     P  D     +  ++ GI
Sbjct: 114 TILVFDIETTGFSRRDDRIIEFA-VR-DLMGGKNSTFQTLI-NPEKDV----KNTYVHGI 166

Query: 64  TPQKALRDGVV-EAEFSRRIHQF-----FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                 R  V    E    + Q+             + +N   FD  +    F R   + 
Sbjct: 167 NNSMLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEM 226

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176
                       D L + + +           S     +S  L+ L     I    +AH 
Sbjct: 227 -----PGDWLFVDTLPIAKQL---------VDSNGSKLSSVSLKFLRERYKIPLTGSAHR 272

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
           A  DV     ++  +  +       L +   +  
Sbjct: 273 AMQDVTTLSYVLQKLTFELKLTVPQLLEKSFRAS 306


>gi|192288734|ref|YP_001989339.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           TIE-1]
 gi|192282483|gb|ACE98863.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 232

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 55/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +   + ++ +   +      +     EA  + G++
Sbjct: 4   IVLDTETTGLDPLRGDRLVEIGCVEI---FNRMPTGRTYHQYLNPERDMPAEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  A  +    +F        +  +N  FD  +      R            
Sbjct: 61  SEFLADKPL-FAHVADEFLEFI---GDAPLVIHNASFDIGFINAELSRLSRAPVPR---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 113 -DRLVDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|312599149|gb|ADQ91172.1| hypothetical protein BpV2_005c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 432

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/443 (14%), Positives = 121/443 (27%), Gaps = 58/443 (13%)

Query: 4   HFVIYDYETFGRD-------------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD 50
           +++ +D ET G                   R    A V+   +  ++ S       P   
Sbjct: 2   NYISWDTETTGLPMGYTKSTPDNVHLFDRCRMLTLAFVKYSSKGRELSSYHGL-VYPDTF 60

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
            +P  E+  + GIT + AL  G           +  S  NT I+  +N  FD+    +  
Sbjct: 61  NVPQ-ESTNVHGITHEHALHKGQPFGYVYAAFKEAVS--NTSILVAHNSSFDENCFFSEC 117

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
           YR  +D               +D ++   +  P               KL  +       
Sbjct: 118 YRRGFD------TEPFKHVHFVDTLKMARSVLPGLHN----------HKLLTVYKYYFGH 161

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYD--YRNKNQLRKLIDIQNMTPLVHVSG 228
             +AHDA  D  A   + +L+R+ + K+ +   +      + +  +I +        V  
Sbjct: 162 EFDAHDALNDSRACGKIYFLLRDNEFKMKDVGIEKVTLKASDIASIIGMNPYKKPKEVLD 221

Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
              A        AP  +  + K+      +             +  K + +S  E K   
Sbjct: 222 NLWAK------YAPETFEGKTKEQEALDTIQKCDASKFLFKDAETYKSMNSSDIERKFNA 275

Query: 289 PVPIKEVHLNKCPI---LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR----- 340
                 +  N       L+     K                N   L++            
Sbjct: 276 VSNQLHMKSNLSKPDIKLVEQHLRKTLFTNHGTRHEDTTASNYEDLKEDETFYKYDVCSI 335

Query: 341 ------FKAIYNKPYTSSSQDVDSQLYDGFFAD---VDRQIMDRILRTAPEQLSTLNLPF 391
                      ++     +         G F      +       +         L   +
Sbjct: 336 EGTTYRICGRIDRIRDDKTIIEIKNRTRGLFNSVRLYEEIQCQVYMEMLDLDKCELIEQY 395

Query: 392 SDRRLPELFFRYRARNFPHTLSE 414
           +D+R   L +R + +     L  
Sbjct: 396 NDKRKTYLIYRDQMKWKSEILPA 418


>gi|225175900|ref|ZP_03729892.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168488|gb|EEG77290.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter
           alkaliphilus AHT 1]
          Length = 198

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 54/201 (26%), Gaps = 32/201 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPA-DDYLPDPEAVFITGI 63
             D ET G     +   + A       R   +I      +           P A  + G+
Sbjct: 14  FVDVETTGLSPRKEEIVELAICLFAYRRDSGEITRIVDRYVGQREPGVPVSPGAARVHGL 73

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                    +     + RI           I  +N  FD  +                  
Sbjct: 74  RMADLRGKQLD----TARIEAILHSAE--FIVAHNASFDRGFVAR--------------- 112

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L  +     +         +  G  S  LQ+L  A+ I+   AH A+ DV A
Sbjct: 113 --------LFPVSGRKQWLCSMSGIDWKGKGFPSRGLQNLLRAHRIDAGRAHRAEDDVLA 164

Query: 184 TLALVWLIREKKPKLFEYLYD 204
           TL L+           + L +
Sbjct: 165 TLKLLACCDHSGKTYSKELIE 185


>gi|327459895|gb|EGF06235.1| DNA polymerase III [Streptococcus sanguinis SK1057]
          Length = 814

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREK 194
            AD  AT  L   I++K
Sbjct: 152 LADAQATAQLFLKIQDK 168


>gi|319939450|ref|ZP_08013810.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV]
 gi|319811436|gb|EFW07731.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV]
          Length = 819

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 29/207 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D E      +  +  Q   V +    + +++ E            D     +T
Sbjct: 5   KRKYAVVDLEATSAS-SNAKIIQVGIVLI-ENGQIVKTYET---DVNPHEKLDSHICQLT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T ++  R     ++ +R I++        I   +N++FD        +   ++     
Sbjct: 60  GLTDKRLRRAP-DFSQVAREIYELIED---AIFVAHNVKFDANLLAEALFWEGFELVT-- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  +                  + L  L     I   +AH A AD 
Sbjct: 114 -----PRVDTVELAQVFFPTFE-------------KYNLGILCEQLDIPLKHAHTALADA 155

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNK 208
            AT  L   I+EK  KL + L +Y  K
Sbjct: 156 SATATLFLKIQEKIQKLPKELVEYLLK 182


>gi|307297035|ref|ZP_07576851.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
 gi|306877561|gb|EFN08789.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
          Length = 230

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I+D ET G D A  DR  +   +     + ++ +   F             A  + G++
Sbjct: 4   IIFDTETTGFDPASGDRLVEIGCI---ELFNRVPTGRTFHAYYNPQRSMPAAAEAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    F   + +  +      +  +N RFD  +  +                
Sbjct: 61  DGFLRDKPL----FGHGVQELLAFLEDSHLVAHNARFDFGFLNHELKLCGLPEVSM---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
            +   D + + R I+  +                 L  L    GI+  H   H A  D  
Sbjct: 113 -DRMIDTVAIARQIHPGA--------------KHSLDALCTRYGIDRSHRIKHGALLDAE 157

Query: 183 ATLALV 188
               L 
Sbjct: 158 LLAQLY 163


>gi|38233670|ref|NP_939437.1| DNA polymerase III subunit epsilon [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199931|emb|CAE49599.1| Putative DNA polymerase [Corynebacterium diphtheriae]
          Length = 234

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 57/217 (26%), Gaps = 43/217 (19%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET   +    R    A VR+D                         A  + GI+ + 
Sbjct: 19  FDLETTSANPFEARIVTSALVRIDSSG---AHPVELLA--DPGVEIPEAASKVHGISTEY 73

Query: 68  ALRDGVVEAEFSR----RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           A   G       +     I+  +    T ++                       Y   +D
Sbjct: 74  AREHGEPHEAVLKRTVDEIYAAWEEGFTLVV-----------------------YNAPYD 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R    D +     + P  I             L DL    G+   NAH+A +D  A
Sbjct: 111 LTVLRQLTGDFVVKGPVYDPYLIDRIMDRFRKGKRTLTDLCSVYGVRMDNAHEATSDALA 170

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
              + W+               R K+ L      + M
Sbjct: 171 AARIAWMQA-----------KKRFKDDLAAYSHDELM 196


>gi|239815139|ref|YP_002944049.1| DNA polymerase III, subunit epsilon [Variovorax paradoxus S110]
 gi|239801716|gb|ACS18783.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus S110]
          Length = 235

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 53/199 (26%), Gaps = 28/199 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   ++ D ET G      DR  +   V     + +  +          +     +A+ 
Sbjct: 1   MSRQ-IVLDTETTGLSAENGDRIIELGCV---ELFARKLTGNDLHIYFNPERESHEDALK 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + G+T           A  +  I ++       I   +N  FD  +              
Sbjct: 57  VHGLTTDFLRDKPK-FATLANDIVEYLRGAELII---HNAAFDVGFLNKELELAGLPP-- 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                          +R+      D +    +        L  L    G++  N   H A
Sbjct: 111 ---------------LRSFVGEVTDTLAMAKQVYPGKRNSLDALCDRFGVDRSNRTFHGA 155

Query: 178 KADVYATLALVWLIREKKP 196
           K D      +   +   + 
Sbjct: 156 KLDAQLLADVYINLTRGQD 174


>gi|311745732|ref|ZP_07719517.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
 gi|126575175|gb|EAZ79525.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
          Length = 1428

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 67/200 (33%), Gaps = 24/200 (12%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     +          R  Q A    D +   I +   +  +P    +P 
Sbjct: 2   YLIFDTETTGLPRDYNAPMSDVDNWPRLVQLAWQLHDEKGNLISNHN-YIIRPEGFTIPY 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             A  + GI+ ++AL++G    +             T  +  +N+ FD     + + R  
Sbjct: 61  -NAEKVHGISTKRALKEGHDLKQILGIFEGDVKK--TKYLVGHNVEFDINVVGSEYLRAE 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                 +        D+     AI        +WP+  +              G    +A
Sbjct: 118 ATMPLTADQLDTK--DISTEFCAIPGGRGGKFKWPTLTELHQKL--------FGKGFGDA 167

Query: 175 HDAKADVYATLALVWLIREK 194
           HDA  DV AT    + +  +
Sbjct: 168 HDAAYDVDATARCFFGLITQ 187


>gi|221066578|ref|ZP_03542683.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
 gi|220711601|gb|EED66969.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
          Length = 243

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 30/200 (15%)

Query: 1   MTNHFVIYDYETFGRDV-ALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+   ++ D ET G      DR  +   V  V+R+     +               P+A+
Sbjct: 1   MSRQ-IVLDTETTGLSAIDGDRLIELGCVELVNRKL----TGNNLHLYFNAGRDSHPDAL 55

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT +        E     +I + +       +  +N  FD  +  N          
Sbjct: 56  RVHGITTEFLKDKPRFE----EKIDEIWEYLQGAELIIHNAPFDLGFLNNELKLAKRPPL 111

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
           +          D L + + +Y                    L  L    G+++ N   H 
Sbjct: 112 KQCVGG---VIDTLVMAKEMYPG--------------KRNSLDSLCDRLGVDNSNRTLHG 154

Query: 177 AKADVYATLALVWLIREKKP 196
           A  D      +   +   + 
Sbjct: 155 ALLDAELLADVYINLTRGQD 174


>gi|322380763|ref|ZP_08054869.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5]
 gi|321146767|gb|EFX41561.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5]
          Length = 219

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 34/204 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVD------RQWEKIESTEVFFCKPADDYLPDPEAV 58
           +   D ET G         + A +  +       + + I S               P+  
Sbjct: 36  YCFVDIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLIHCLE----VPPKIT 91

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TG++         +EA   +    F       I   +N  FD ++      +    + 
Sbjct: 92  ELTGLSTDDLKEAPPLEA-VLQDFKLFIQDH---IFVAHNADFDFHFISACCAQVLDSAL 147

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                  N++   L++ R                  +    LQ L    G++   +H A 
Sbjct: 148 ------SNAKLCTLNLARKCIP--------------SPRHGLQFLNTFLGLDIPISHRAY 187

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
           AD  A+L +        P+     
Sbjct: 188 ADALASLRVFEHCLRVLPQEIYTA 211


>gi|262365378|gb|ACY61935.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038]
          Length = 128

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 12/118 (10%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNKLGVHYEGHRIIEIGAVEV-INRRLTGR--NFHVYVKPDRLVDPEAYGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            GI+ +         A+ +     F        +  +N  FD  +    F     D  
Sbjct: 66  HGISDEFLADKP-TFADITPEFLDFIRGAE---LVIHNAAFDIGFMDYEFRMLQQDIP 119


>gi|264678862|ref|YP_003278769.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
 gi|299532427|ref|ZP_07045819.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
 gi|262209375|gb|ACY33473.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
 gi|298719665|gb|EFI60630.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
          Length = 243

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 30/200 (15%)

Query: 1   MTNHFVIYDYETFGRDV-ALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+   ++ D ET G      DR  +   V  V+R+     +               P+A+
Sbjct: 1   MSRQ-IVLDTETTGLSAIDGDRLIELGCVELVNRKL----TGNNLHLYFNAGRDSHPDAL 55

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + GIT +        E     +I + +       +  +N  FD  +  N          
Sbjct: 56  RVHGITTEFLKDKPRFE----EKIDEIWEYLQGAELIIHNAPFDLGFLNNELKLAKRPPL 111

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
           +          D L + + +Y                    L  L    G+++ N   H 
Sbjct: 112 KQCVGG---VLDTLVMAKEMYPG--------------KRNSLDSLCDRLGVDNSNRTLHG 154

Query: 177 AKADVYATLALVWLIREKKP 196
           A  D      +   +   + 
Sbjct: 155 ALLDAELLADVYINLTRGQD 174


>gi|90407281|ref|ZP_01215467.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3]
 gi|90311564|gb|EAS39663.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3]
          Length = 236

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 62/243 (25%), Gaps = 31/243 (12%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G +         R  +   V V            +      D   DPEAV +
Sbjct: 10  VVLDTETTGMNKDGTIYLGHRIIEIGCVEV-INRRLTGRH--YHVYLQPDREVDPEAVTV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         A+ +     F       ++ +N      +  +   + N       
Sbjct: 67  HGITDEFLQDKPH-FADIADDFIDFIR--GADLVIHNAPFDVGFMDQEFRFLN------- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAK 178
                       ++             +P          L  L    G   +H   H A 
Sbjct: 117 -----KKTQPTEEIATVTDTLVMAKKMFPG-----KRNNLDILCDRYGINTKHRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPK-LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
            D      +  L+   + K       D  + +  +       +  +   +    A     
Sbjct: 167 LDAEILADVYLLMSGGQSKLNLSDDLDNMDSHTRQPRTSNNPLCIIRATAAENKAHIERL 226

Query: 238 ALI 240
            LI
Sbjct: 227 QLI 229


>gi|310823691|ref|YP_003956049.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|309396763|gb|ADO74222.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 982

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 57/193 (29%), Gaps = 32/193 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G D  +D   +   +       ++      +   A           +TGI  
Sbjct: 12  VFLDLETTGLDPRVDEVIELGALFF-EHGREVRRIARMY---APSRPLPITIRRLTGIED 67

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                     ++    + +  +      +  +N  F+  +                   G
Sbjct: 68  AMLAGKPRFGSD-LDELREALTGW---TVVAHNAPFEKGFL--------------PKLLG 109

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
             R  +LD    ++   P+           +S  L+ +    G++  + H  + D  AT 
Sbjct: 110 PIRAPVLDSCELLHYLHPEL----------SSHSLEAMMRWAGLKPRSTHRVETDCEATY 159

Query: 186 ALVWLIREKKPKL 198
           A++    E   + 
Sbjct: 160 AVLSRALEGCIRE 172


>gi|261210981|ref|ZP_05925271.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260839956|gb|EEX66556.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 233

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 53/195 (27%), Gaps = 17/195 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D+ET G +   +       V        ++     +           ++V I GIT
Sbjct: 44  LVALDFETTGLNPQQEAILSVGLVPFTTSRIALKE--ARYWLVKPTQPLAEQSVVIHGIT 101

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  R    +      + +        I   +    +  + +    + + ++       
Sbjct: 102 HSELSRAQAPD----EVLRELIGALRGKIAVVHFRHIEREFLQQATLQLWGEALE----- 152

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRD--DGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 L+D +            +  R       S +L    +  G+   + H A  D  
Sbjct: 153 ----LPLIDTLEVERHILQQQRSFWQRVTGRPLPSLRLGQSRMRYGLPSYSPHHALTDAI 208

Query: 183 ATLALVWLIREKKPK 197
           AT  L         +
Sbjct: 209 ATAELFQAQYTHHMQ 223


>gi|229529628|ref|ZP_04419018.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229333402|gb|EEN98888.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
          Length = 236

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V      ++I  ++  +         + E++   GI
Sbjct: 46  SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEEESIVFHGI 103

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +     +  I+  +    +  + R            W   
Sbjct: 104 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIEREFLRQ------ISLNIWGEA 153

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q         S +L    +   +   + H A  D  A
Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQR-ITRQPLPSIRLGQSRMRYHLPPYSPHHALTDAIA 212

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 213 TAELFQAQCAHHLP 226


>gi|313682951|ref|YP_004060689.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155811|gb|ADR34489.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 204

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 20/188 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G +   D       V++  + +KI ++E F            E++ I  I P
Sbjct: 32  VVFDTETTGLNTKKDEVLSIGAVKI--KGDKILTSESFELFLKPSREISVESIKIHHIRP 89

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  +   E +++  +F    N  +IGY        +   +  R        +  N 
Sbjct: 90  CDLENA-IEPVEGAKKFLEFV--GNRPLIGYY-----LEFDMAMMNRLIKPWIGVNLPNR 141

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L              +      G    +   +     I  +  H+A  D   T 
Sbjct: 142 QIEVSGL----------YFDKKIELIPQGNIDLRFDTILRDLNIPRMGQHNALNDAIMTA 191

Query: 186 ALVWLIRE 193
            +   ++ 
Sbjct: 192 MVYIKLQH 199


>gi|313682834|ref|YP_004060572.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155694|gb|ADR34372.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 293

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 64/220 (29%), Gaps = 19/220 (8%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             H +I D ET G    +DR  Q + +  D + E +E        P        EA+ I 
Sbjct: 1   MRHTIILDTETTGAG-EVDRICQLSYLVCDEKGEILELHNDLCTPPLP---ISFEAMAIH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITP+            +       + P+  ++  N        ++              
Sbjct: 57  HITPEMLTGAPKCIETSAFNRLAELNTPDNLMVIQNAEFDLGMLAKEGMG---------- 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D   V+RA +           R       K Q L    GIE   AHDA  DV
Sbjct: 107 --LEMKLVDTFRVLRAWHPLDTPHGLQFKRYQWGLYHKEQPLIDKLGIEI-KAHDALGDV 163

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
                L   + E        + +  +K  +   +      
Sbjct: 164 IVLKHLYEKLLESHNAEG--MIELCSKPIILDYVPFGKHK 201


>gi|146300234|ref|YP_001194825.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146154652|gb|ABQ05506.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 209

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 58/205 (28%), Gaps = 20/205 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G D   DR      + +      I   + F      D   D     I GI 
Sbjct: 25  FVVLDTETTGFDYENDRILCIGALALQNG--VISVQDSFEIYLHQD-HYDKSTAQIHGIL 81

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               ++    E E  ++   F       II  ++  FD         RN           
Sbjct: 82  KDLLVKRP-TELEALQQFLDFL---GDSIIIAHHTVFDVTMINKALERNGLPQ------- 130

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 L +            +      +    + L DLA    I   + H A  D Y T
Sbjct: 131 ------LTNKTLDTAYLYKKTLIQSHLFERKDHYTLDDLADKFDISKKDRHTALGDAYIT 184

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
                 I +K  +      +   KN
Sbjct: 185 AIAFLKIVKKLREKKAVSLNQLFKN 209


>gi|323493392|ref|ZP_08098514.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323312215|gb|EGA65357.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 239

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 53/193 (27%), Gaps = 12/193 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D+ET G     D       V  +     I   + +  KP        ++V I GIT
Sbjct: 49  FLAMDFETTGLSSDDDDIITIGTVPFNLNRIYINQAQHWTVKPRKQL--AEDSVVIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               L       + S    Q        I+  +  R +  +          +        
Sbjct: 107 HSDVLDAP----DLSGIYQQVLEQMAGKIMVVHYQRIEREFFDKALMARIKEGIE----- 157

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + +   +      GI    R     S +L       G+     H A  D  AT
Sbjct: 158 -FPVVDTMQIETTLQQKLKGGILNKIRGRKPESVRLGASRARYGLPLYTPHHALTDAVAT 216

Query: 185 LALVWLIREKKPK 197
             L+        +
Sbjct: 217 AELLQAQIAHHYE 229


>gi|313768005|ref|YP_004061436.1| hypothetical protein BpV1_006c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599612|gb|ADQ91633.1| hypothetical protein BpV1_006c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 432

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 61/438 (13%), Positives = 130/438 (29%), Gaps = 48/438 (10%)

Query: 4   HFVIYDYETFGRD-------------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD 50
           +++ +D ET G                   R    A V+   +  ++ S       P   
Sbjct: 2   NYIAWDTETTGLPMGYKKATPDNIHLFDKCRMLTLAFVKYSSKGRELSSYHGL-VYPDTF 60

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
            +P  E+  + GIT + A+  G           +  S  NT I+  +N  FD+    +  
Sbjct: 61  DVPQ-ESTNVHGITHEHAIHKGQPFGYVYAAFKEAVS--NTSILVAHNSSFDENCFFSEC 117

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
           YR  +D               +D ++   +  P               KL  +      +
Sbjct: 118 YRRGFD------TEPFKHVHFVDTLKMARSVLPGLFN----------HKLLTVYKHYFGK 161

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
             +AHDA  D  A   +  L+R+ + K+ +   +     +   +  I  M P      + 
Sbjct: 162 EFDAHDALNDSRACGTIYPLLRDNEFKMKDVGIEKVT-LKASDIASIIGMNPYKKPKEVL 220

Query: 231 GASRSNTALIAPVAWHPR------YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL 284
               +  A                 +       L  D   ++ ++S  + ++     ++L
Sbjct: 221 DNLWAKYAPETFEGKTKEQEALDTIQKCSASRLLFKDTETYKSMNSSDIERKFNAVSNQL 280

Query: 285 KGLVPVPIKEVHLNKCPILMPI-DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD---- 339
                +   ++ L +      +       H E   +++    E+ T  + +    +    
Sbjct: 281 HMKSNLSKPDIKLVEEHFRKTLFTNHGTRHEETTALNYDDLKEDETFYKYEVCSIEGTTY 340

Query: 340 RFKAIYNKPYTSSSQDVDSQLYDGFFAD---VDRQIMDRILRTAPEQLSTLNLPFSDRRL 396
           R     ++     +         G F      +       +         L   ++D+R 
Sbjct: 341 RICGRIDRIRDDKTIIEIKNRTRGLFNSVRLYEEIQCQVYMEMLDLDKCELIEQYNDKRK 400

Query: 397 PELFFRYRARNFPHTLSE 414
             L  R + +     L  
Sbjct: 401 TYLIHRDQMKWKSEILPA 418


>gi|170024544|ref|YP_001721049.1| exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis YPIII]
 gi|186895217|ref|YP_001872329.1| exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
 gi|169751078|gb|ACA68596.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis YPIII]
 gi|186698243|gb|ACC88872.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
          Length = 217

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 23/193 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +  +++I D ET G         + + +  D   + +                  EA  I
Sbjct: 41  LKRNYLILDTETTGLG-NDAEIIEISII--DCTGKIL-----LDTLVKPIKAIPAEATAI 92

Query: 61  TGITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            GIT               R IH QF  + N   +   N  FD          N      
Sbjct: 93  HGITNDIVADAPT-----WRDIHWQFMVLTNDRTLLIYNASFDSRLIFQTAAANNCPVPE 147

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAK 178
             +      +D   VM +   +     QW  + +     +L + A   G+      H A 
Sbjct: 148 KKY-----IFDAECVMESYAKYYG---QWDQKRNKFKWQRLSNAAEQQGVAIDGTPHRAL 199

Query: 179 ADVYATLALVWLI 191
           AD   TL ++  +
Sbjct: 200 ADCKTTLGIIRAM 212


>gi|88606785|ref|YP_505310.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
 gi|88597848|gb|ABD43318.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
          Length = 244

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 62/218 (28%), Gaps = 29/218 (13%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +   +       VF      +      A  + GIT
Sbjct: 6   IVLDTETTGLDADGGDRIIEIGCVEL-VDYVMTGR--VFHKYIDPERDISVAATRVHGIT 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +      AE +  +  F        +  +N RFD  +      R            
Sbjct: 63  RESLIGMPK-FAEVADELLDFLQDS---ALVIHNARFDMRFLEVEIER-----LSNKRAI 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            N+  D L++ R  +   P                L  L     I       H A  D  
Sbjct: 114 TNTIVDTLEMARKKFPGMPA--------------SLDALCKRFNISTQERKFHGALKDAT 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
               +   + E   +   +  +  +  Q+  + D    
Sbjct: 160 LLARVYVELLEALQRRLVFSQEGDDSKQVSVIHDKAKR 197


>gi|309803980|ref|ZP_07698062.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners
           LactinV 11V1-d]
 gi|308163899|gb|EFO66164.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners
           LactinV 11V1-d]
          Length = 933

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 5   FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      DR  QF    + +  +  ++          +         +TGI
Sbjct: 11  FAVVDLETTGTQIKQHDRIIQFGCAII-KDRKITKTYSFL---INPEKTIPRAVENLTGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+A +     + ++++I +        I   +NI FD  +            +     
Sbjct: 67  SNQEASKA-QTFSFYAKKIQEILEN---TIFVAHNINFDLPFLNYELINAGLSPF----- 117

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KLQD+     I+H N H A +D   
Sbjct: 118 -DGKAIDTVELAQIAF-------------PTIPSYKLQDITNTLHIKHANPHRADSDALV 163

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           T  ++  I +K   L     +         L +   +   V           N  LI
Sbjct: 164 TAKMLLKIIDKIEMLPTATLNSLTSMSRGLLRNTYYIFSQVSTYARQEKRPLNNDLI 220


>gi|116326190|ref|YP_803516.1| EXO III v-trex [Anticarsia gemmatalis nucleopolyhedrovirus]
 gi|46242295|gb|AAS83208.1| 3' repair exonuclease [Anticarsia gemmatalis nucleopolyhedrovirus]
 gi|112180928|gb|ABI13905.1| EXO III v-trex [Anticarsia gemmatalis nucleopolyhedrovirus]
          Length = 230

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 60/211 (28%), Gaps = 16/211 (7%)

Query: 3   NHFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPE 56
             +V  D ET G         +  + +   V R+ E + +                   +
Sbjct: 5   KTYVFLDLETTGLPKLQNDQTQITELSLQCVTRE-ELLGAARVCNKLTLCFEPTVPISEQ 63

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           A  +T +  +      + +      I  F +   P  C++ YN   FD          N 
Sbjct: 64  ASALTQLNAENLRGQPLFDKRAVALIESFLALLSPPVCLVAYNGFAFDFPILYKHLKDNG 123

Query: 115 Y-------DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
           +       D+Y   +   +               +     W        S+KL DL   +
Sbjct: 124 FASAVQCADAYHALFAILDGSGPPTMKRSKSGTVTVKLCPWQRGARPKQSYKLVDLYKRH 183

Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKL 198
              ++  H A+ D    + LV     +    
Sbjct: 184 VGGNLKGHRAEDDCAMMMQLVQKHAAEFVNW 214


>gi|156368138|ref|XP_001627553.1| predicted protein [Nematostella vectensis]
 gi|156214466|gb|EDO35453.1| predicted protein [Nematostella vectensis]
          Length = 275

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 6/110 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFITG 62
            + + D ET G     DR  Q A V+V    +  + + + +  P  D          +  
Sbjct: 26  TYCVLDVETTGLSKLNDRIVQIACVKVKPTGD--KESWMSYINPCMDREKQLAGGYKVHH 83

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           ++P   L+     +E    + +F        +   N  +D       F R
Sbjct: 84  LSPDMLLKKPK-FSEIVESLWRFL--CGAEYLVAYNCLYDWDMLCQEFRR 130


>gi|126665477|ref|ZP_01736459.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
 gi|126630105|gb|EBA00721.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
          Length = 245

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 56/193 (29%), Gaps = 18/193 (9%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET G             V    +  ++ +   +  KP         +V I GIT 
Sbjct: 56  VAIDFETTGLSATEHSIISVGLVPFTLEGIQLSAARHWLVKPK--LALHQTSVTIHGITH 113

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
               +      +    + +        +   +    +         R F D         
Sbjct: 114 ADLEQAP----DLVDILPELLECLAGRLPVVHYRDIE---------RPFLDVALRHRLQE 160

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRD---DGATSFKLQDLALANGIEHVNAHDAKADVY 182
             ++ LLD M       PD      +        S +L D  L  G+ H  AH+A  D  
Sbjct: 161 GIQFPLLDTMAIEAHLHPDRRPTFWQTWRGKKPLSIRLSDSRLRYGLPHYAAHNALMDAI 220

Query: 183 ATLALVWLIREKK 195
           AT  L+       
Sbjct: 221 ATAELLQAQIAHH 233


>gi|121605184|ref|YP_982513.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans
           CJ2]
 gi|120594153|gb|ABM37592.1| DNA polymerase III, epsilon subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 240

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 52/198 (26%), Gaps = 29/198 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G      DR  +   V  V R+     +                +A+ + GI
Sbjct: 4   IVLDTETTGLSAENGDRIIEIGCVELVRRKL----TGNNKHFYLNPGRNSHEDALKVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +           FS  + +         I  +N  FD  +          +       
Sbjct: 60  SNEFLKDKPK----FSAVVDELLDYLQGAEIIIHNAPFDVSFLNKELEIIGREP------ 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                     +M  +   +   +       G  +  L  L     +++     H A  D 
Sbjct: 110 ----------LMHCVAKVTDSLMMAKEMFPGKRN-SLNALCDRLEVDNSGRTLHGALLDA 158

Query: 182 YATLALVWLIREKKPKLF 199
                +   +   +  L 
Sbjct: 159 ELLADVYINLTRGQNSLM 176


>gi|55820864|ref|YP_139306.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55736849|gb|AAV60491.1| ATP-dependent DNA helicase, truncated [Streptococcus thermophilus
           LMG 18311]
          Length = 557

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 29/204 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           TN + I D E            Q   V + +    I+               D   V +T
Sbjct: 17  TNKYAIVDLEATSASSTAC-IIQVGIV-IMQNGRVIDEFAS---DVNPHQKLDNHIVHLT 71

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q+  +     +E +R I +       CI   +N++FD        +   ++     
Sbjct: 72  GITDQQLSQAP-DFSEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE----- 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  Y                  + L  L+    ++   AH A  D 
Sbjct: 123 --LRTPRVDTVELAQVFYPTLEQ-------------YNLSYLSRVLNLDLAQAHTAIEDA 167

Query: 182 YATLALVWLIREKKPKLFEYLYDY 205
            AT  L+  + +K   L     D 
Sbjct: 168 RATGKLLLHLMDKIASLPRQTIDM 191


>gi|255325307|ref|ZP_05366413.1| DNA polymerase III epsilon subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297872|gb|EET77183.1| DNA polymerase III epsilon subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 443

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 68/230 (29%), Gaps = 24/230 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63
           F   D ET   +       Q   VR     ++ +S   + C P        +  V I GI
Sbjct: 100 FTAVDVET--ANDNWGSICQIGAVRFRE-GQETDS-RSWLCTPPPGIEHFADINVSIHGI 155

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E S+ +  F       ++  +N +FD    R+       +       
Sbjct: 156 TADDVKGAPA-FVEVSKELFDFL---GGDVLVAHNAQFDSTALRSALLTAGAE------- 204

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +  +    + +       ++     + KL  +A        + HDA  D  A
Sbjct: 205 --------VPTVPLACSLALSRDASKAKVISVRNHKLPTVAAHLSAPDFSHHDATEDARA 256

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
              ++  + E+          +  +      +D + + P++       + 
Sbjct: 257 AGEIIARLAERFGHTGSIRDLFTAREFTLGRLDSEAILPVLRAHTAPTSG 306


>gi|240014290|ref|ZP_04721203.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           DGI18]
 gi|240117765|ref|ZP_04731827.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID1]
 gi|240121853|ref|ZP_04734815.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID24-1]
 gi|240125570|ref|ZP_04738456.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           SK-92-679]
 gi|268603465|ref|ZP_06137632.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
 gi|268684159|ref|ZP_06151021.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
 gi|268587596|gb|EEZ52272.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
 gi|268624443|gb|EEZ56843.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
          Length = 244

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MMTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T Q          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRVGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|88808413|ref|ZP_01123923.1| Exonuclease [Synechococcus sp. WH 7805]
 gi|88787401|gb|EAR18558.1| Exonuclease [Synechococcus sp. WH 7805]
          Length = 272

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 62/232 (26%), Gaps = 29/232 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +  +I D ET G D   D+  +   +       ++ +     C    D  P   A  I 
Sbjct: 41  PSRLLIVDTETTGLDADRDQCLEVGAILFSVPHRQVLAQMS--CLLPVDSNP---AESIN 95

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I P +  R      +      +     +   +  +N  FD  +                
Sbjct: 96  RI-PAEVSRVEQPWGDGLAWFERMMMSAD--YLVAHNAAFDRQWFGRGA----------- 141

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L   +  +  + + I+WP   +      + DLALA GI   +AH A  D 
Sbjct: 142 ----------LPEAKRPWLCTLEDIRWPEARNLKARPSVIDLALAYGIPVWSAHRALTDC 191

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                +     + +  +   L   R                           
Sbjct: 192 IYLAEVFQRCDDLEELITHALEPRRLVRAQVSYDQRHLAREAGFRWNEPVKG 243


>gi|322378997|ref|ZP_08053400.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1]
 gi|321148489|gb|EFX42986.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1]
          Length = 219

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 34/204 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVD------RQWEKIESTEVFFCKPADDYLPDPEAV 58
           +   D ET G         + A +  +       + + I S               P+  
Sbjct: 36  YCFVDIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLIHCLE----VPPKIT 91

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TG++         +EA   +    F       I   +N  FD ++      +    + 
Sbjct: 92  ELTGLSTDDLKEAPPLEA-VLQDFKLFIQDH---IFVAHNADFDFHFISACCVQVLDSAL 147

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                  N++   L++ R                  +    LQ L    G++   +H A 
Sbjct: 148 ------SNAKLCTLNLARKCIP--------------SPRHGLQFLNTFLGLDIPISHRAY 187

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
           AD  A+L +        P+     
Sbjct: 188 ADALASLRVFEHCLRVLPQEIYTA 211


>gi|237733311|ref|ZP_04563792.1| 3'-5' exonuclease [Mollicutes bacterium D7]
 gi|229383692|gb|EEO33783.1| 3'-5' exonuclease [Coprobacillus sp. D7]
          Length = 443

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 29/191 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M       D ET   +   +  +    + VD            +     +   D   + +
Sbjct: 1   MEQSITFVDVET--PNYQNNSISSIGVINVDGDGVVT----TKYFLVDPEAHFDRFNIEL 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP+          E    I  +F+     ++  +N  FD         R     +  
Sbjct: 55  TGITPEMVADQP-NFKEVWSEIEPYFTNS---LVVAHNAVFDLGVISACLQRYDLPIFPI 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            +             R   A              + S+KL DL+    +   N H+A AD
Sbjct: 111 FYT---------CTYRISRALKI----------PSNSYKLNDLSSYYHVTLDNHHNALAD 151

Query: 181 VYATLALVWLI 191
             A + + + +
Sbjct: 152 SKACMEIFYYL 162


>gi|222151350|ref|YP_002560506.1| hypothetical protein MCCL_1103 [Macrococcus caseolyticus JCSC5402]
 gi|222120475|dbj|BAH17810.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 850

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 66/205 (32%), Gaps = 27/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   + + D ET G ++  D   Q     V +  + IE+ + F     +          +
Sbjct: 1   MNRKYAVVDIETTGNNLDSDEIIQVGIAIV-QNKKIIETYDTFIACNNE---IPAFIQSL 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T I     +      +  +  I +     + C+   +N++FD  + +  F    +     
Sbjct: 57  TKIDAFDLVDAP-NFSHVASHIIKLL---DGCVFVAHNVQFDLRFLQKYFSEAGHKFQPR 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +D  + +Y                  ++L+ +A   GIE  +AH A  D
Sbjct: 113 Y------IIDTVDWFKIVY-------------PSLERYQLKSIADDLGIELSSAHRAIDD 153

Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205
             AT  +     +K           
Sbjct: 154 AVATAEVFIESIKKVTTFPSDTIKM 178


>gi|261838819|gb|ACX98585.1| DNA polymerase III epsilon subunit [Helicobacter pylori 51]
          Length = 323

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 109 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 162

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 163 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 296


>gi|253996734|ref|YP_003048798.1| DNA polymerase III subunit epsilon [Methylotenera mobilis JLW8]
 gi|253983413|gb|ACT48271.1| DNA polymerase III, epsilon subunit [Methylotenera mobilis JLW8]
          Length = 227

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 53/203 (26%), Gaps = 33/203 (16%)

Query: 6   VIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           +  D ET G       R  + A V      E +        F      D   DP A  + 
Sbjct: 4   IFLDTETTGLYHAQGHRVIEIAAV------EVVNRRLTKHHFHYYLNPDRDIDPGAQEVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +         A+ +  +  F +      +  +N  FD  +                
Sbjct: 58  GISLEFLQDKPR-FADIANELITFIADAE---LIMHNAPFDVGFLNCELGLIGQK----- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                        +  I A   D ++            L  L    GI++     H A  
Sbjct: 109 ------------KVEEISAKVTDTLKIAKEMRPGQRNNLDALCKYFGIDNSKRTLHGALL 156

Query: 180 DVYATLALVWLIREKKPKLFEYL 202
           D      +   +   +  L   L
Sbjct: 157 DAELLADVYMAMTRGQDSLMIAL 179


>gi|301300766|ref|ZP_07206950.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851616|gb|EFK79316.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 929

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 70/226 (30%), Gaps = 28/226 (12%)

Query: 5   FVIYDYETFG-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G +    D+  QF+   V    + +                  E   +TGI
Sbjct: 7   YAVVDLETTGPKQDGSDKIIQFSCDFVQSN-KIVNHFSTL---INPGMPIPVEVKKLTGI 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E +  I+             +N+ FD  +  +   R  Y        
Sbjct: 63  KDKDVRYAPY-FDEVAGTIYAMLQN---TTFVAHNVNFDYSFLSSELERAGYPELE---- 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++D ++      P             S++L D++    + H++ H A +D  A
Sbjct: 115 -----LPMMDTVQLTQIIYPTL----------VSYRLIDISKYLQLSHIHPHKADSDTKA 159

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
           T  L+  ++++       L     K     +         V+++  
Sbjct: 160 TAELLINLKKRIETFPLILLQRLAKMGDSLIAQTGEFFNEVYLTKK 205


>gi|254437617|ref|ZP_05051111.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           307]
 gi|198253063|gb|EDY77377.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           307]
          Length = 242

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 57/224 (25%), Gaps = 42/224 (18%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +  DR  +   + +         T   +  P         A  I GI 
Sbjct: 4   IVLDTETTGFEPSEGDRIVEIGAIEL-HNHMPTGRTYHQYINPKRSM--PAGAFGIHGIG 60

Query: 65  PQK-------------ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           P                    V  A+ ++    F        +  +N  FD  +      
Sbjct: 61  PDLLDPPQTPTAGQVILRDKPV-FADIAQAFVDFIGDAK---LVIHNAAFDMKFLNAELG 116

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                             D L + R  +  SP                L  L    GI++
Sbjct: 117 WVNRPLLPMDQS-----LDTLGIARKKFPGSPA--------------SLDALCRRFGIDN 157

Query: 172 VNA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            N   H A  D      +   +   +           +K++   
Sbjct: 158 SNRTLHGALLDSEILAEVYLELIGGRQPDLVMGGQTSSKSKTAA 201


>gi|328945970|gb|EGG40117.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis
           SK1087]
          Length = 814

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 32/207 (15%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
            AD  AT  L   I++K   L + L +
Sbjct: 152 LADAQATAQLFLKIQDKIKSLPKALVE 178


>gi|153830906|ref|ZP_01983573.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|229515666|ref|ZP_04405125.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|148873606|gb|EDL71741.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|229347435|gb|EEO12395.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
          Length = 236

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V    Q   +      +         + E++   GI
Sbjct: 46  SLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQ--ARYWLVKPSQPLEEESIVFHGI 103

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +     N  I+  +    +  + R            W   
Sbjct: 104 THSELQYAQAPE----QVLKELLEALNGKIVVVHFRHIEREFLRQ------ISLNIWGEA 153

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q  +R     S +L    +   +   + H A  D  A
Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQRITRRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 212

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 213 TAELFQAQCAHHLP 226


>gi|90414055|ref|ZP_01222038.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
 gi|90324850|gb|EAS41378.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
          Length = 246

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 32/203 (15%)

Query: 3   NHFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
              ++ D ET G +            +   V +    +       F      D   + EA
Sbjct: 10  QRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEI-INRKLTG--NSFHVYIKPDRTIEVEA 66

Query: 58  VFITGITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           + + GIT +  +          + +H +F        +  +N  FD  +     +R    
Sbjct: 67  IGVHGITDEFLIGKP-----VYKEVHDEFLEFIKGAELVAHNAPFDVGFMDYE-FRKLNP 120

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
           +   + ++     D L + + I+                    L  L    GI+  H   
Sbjct: 121 NIGKT-EDFCKVTDTLAMAKKIFPG--------------KRNNLDILCSRYGIDNSHRTL 165

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 166 HGALLDAEILADVYLLMTGGQTS 188


>gi|325696784|gb|EGD38672.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK160]
          Length = 814

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 64/197 (32%), Gaps = 32/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G      +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTGSGA-KIIQIGIVLI-ENGSITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCDLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREK 194
            AD  AT  L   I++K
Sbjct: 152 LADAQATAQLFLKIQDK 168


>gi|152993730|ref|YP_001359451.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1]
 gi|151425591|dbj|BAF73094.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1]
          Length = 272

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 68/229 (29%), Gaps = 38/229 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFIT 61
             + + D ET G      +  +   V V  + E ++  E F  C    +Y+       IT
Sbjct: 72  QRYCVIDIETNGSKPGTSQVIEIGAVMV-EKGEIVDRLETFVECAFLPEYI-----TKIT 125

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P               ++ QF       +   +N  FD  +    F R         
Sbjct: 126 GIEPIDLKDAP-TRRAALTQLRQFM---GDAVFVAHNANFDYSFLTASFERFGLGGI--- 178

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
              GN +   +D+ +  +               +  + L  L    GIE    H A +D 
Sbjct: 179 ---GNPKLCTIDLAKRTF--------------ESERYGLAYLIDFLGIETATHHRAYSDA 221

Query: 182 YATLALVWLIREKKPKLF-------EYLYDYRNKNQLRKLIDIQNMTPL 223
                ++    E  P+         ++    R +   +         P+
Sbjct: 222 LCAEKVMEKSFENLPEYVKTTDDLLQFSISSRKQRTQKNKDKATTARPV 270


>gi|126667590|ref|ZP_01738560.1| exonuclease [Marinobacter sp. ELB17]
 gi|126628016|gb|EAZ98643.1| exonuclease [Marinobacter sp. ELB17]
          Length = 232

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 64/207 (30%), Gaps = 25/207 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFI 60
           T+  ++ D ET G + A D+      V ++     + +  ++   +P  D     + V I
Sbjct: 35  TSRLIVLDLETTGLNPAKDQMIAIGAVAINNNAMPLDDQFDLILRRPELDIR---KTVLI 91

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI P+        E      +       N   I   +  FD  +               
Sbjct: 92  HGIGPEALTAGHETE----DALLHLLDWMNGDPILAYHSAFDQKFLEKTLRAELGYGENH 147

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W       D+ ++M A +  +    +            L + A   G++    H A AD
Sbjct: 148 IW------LDVAELMPAFFPTANKQRK-----------GLDNWADTFGLQASARHHAAAD 190

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
              T  L  +   K  +   +     +
Sbjct: 191 AMVTAELTLIALNKAAQQGIHTLAQLS 217


>gi|227890751|ref|ZP_04008556.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|227867160|gb|EEJ74581.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 937

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 70/226 (30%), Gaps = 28/226 (12%)

Query: 5   FVIYDYETFG-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G +    D+  QF+   V    + +                  E   +TGI
Sbjct: 15  YAVVDLETTGPKQDGSDKIIQFSCDFVQSN-KIVNHFSTL---INPGMPIPAEVKKLTGI 70

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E +  I+             +N+ FD  +  +   R  Y        
Sbjct: 71  KDKDVRYAPY-FDEVAGTIYAMLQN---TTFVAHNVNFDYSFLSSELERAGYPELE---- 122

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++D ++      P             S++L D++    + H++ H A +D  A
Sbjct: 123 -----LPMMDTVQLTQIIYPTL----------VSYRLIDVSKYLQLSHIHPHKADSDTKA 167

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
           T  L+  ++++       L     K     +         V+++  
Sbjct: 168 TAELLINLKKRIETFPLILLQRLAKMGDSLIAQTGEFFNEVYLNKK 213


>gi|15612503|ref|NP_224156.1| DNA polymerase III subunit epsilon [Helicobacter pylori J99]
 gi|4156060|gb|AAD07016.1| DNA POLYMERASE III [Helicobacter pylori J99]
          Length = 323

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 109 FSFVDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 162

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 163 TYEDTLNAPSAH-EALQELRIFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 296


>gi|329894914|ref|ZP_08270713.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
 gi|328922643|gb|EGG29978.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
          Length = 247

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 54/197 (27%), Gaps = 28/197 (14%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           ++ D ET G +     R  +   V      E I        F          DP A+ + 
Sbjct: 4   IVLDTETTGLETSDGHRVIEIGCV------ELINRRLSGRHFHQYINPQREVDPGAMEVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +      +  +  +    +F       I   +N  FD  +                
Sbjct: 58  GISNEFLQDKPL-FSAIADEFLEFIKGAELII---HNAPFDIGFLDYEL----------- 102

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                 R   +  + ++       +    +  G  +  L  L     +++   + H A  
Sbjct: 103 SLESERRAAPMPTVESLCGVIDTLVMARRKHPGQRN-TLDALCTRYDVDNSSRDLHGALL 161

Query: 180 DVYATLALVWLIREKKP 196
           D      +   +   + 
Sbjct: 162 DSEILADVYLAMTGGQT 178


>gi|240016725|ref|ZP_04723265.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA6140]
          Length = 244

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MMTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T Q          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRVGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAIAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|125717716|ref|YP_001034849.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus sanguinis SK36]
 gi|125497633|gb|ABN44299.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit,
           putative [Streptococcus sanguinis SK36]
          Length = 814

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEDLDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREK 194
            AD  AT  L   I++K
Sbjct: 152 LADAQATAQLFLKIQDK 168


>gi|206603443|gb|EDZ39923.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
           '5-way CG']
          Length = 265

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 61/199 (30%), Gaps = 28/199 (14%)

Query: 4   HFVIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
                D ET G    +  R  +          + +            D +PD     I G
Sbjct: 2   KITFLDVETTGLLRDSRARIIELGF-STWENGKLLRKNSTLIKSV--DVVPD-NISKING 57

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +        E +  + I + F      I+  +N+ FD                    
Sbjct: 58  ITTEMLKDAPGFE-DVWKSIKEDFQ---GSILVAHNLAFDVGMVNREL------ILANRI 107

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             GN   D L + R +                 +S++L ++A   GI + + H A  D+ 
Sbjct: 108 PLGNMGIDTLPLSRKM-------------LPELSSYRLGEIAKHMGILNESPHRAMGDLE 154

Query: 183 ATLALVWLIREKKPKLFEY 201
               ++  + E  P  F+ 
Sbjct: 155 TLEKILSNLLESLPGTFDE 173


>gi|152992740|ref|YP_001358461.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1]
 gi|151424601|dbj|BAF72104.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1]
          Length = 206

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 50/188 (26%), Gaps = 20/188 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G D   D       V++       +     + K         E++ I  I  
Sbjct: 32  VVFDCETTGLDPKKDGIVSIGAVKIKENRILTDEAMHIYVKQEKQ--ISHESITIHQIRH 89

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  V   E       F       + GY        +   +  +     Y  +  N 
Sbjct: 90  CDLEDA-VPIEEAIEEFLYFI--GGRTLAGYY-----LEFDVAMINKYIKPMYGITLPNK 141

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 +              +  +   G    + + +     +  + AHDA  D   T 
Sbjct: 142 QEEVSAI----------YYDKKISTIPQGNIDLRFETIIEDLSLPKLQAHDALNDAVMTA 191

Query: 186 ALVWLIRE 193
            +   ++ 
Sbjct: 192 MIYLKLKH 199


>gi|87302291|ref|ZP_01085116.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH
           5701]
 gi|87283216|gb|EAQ75172.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH
           5701]
          Length = 297

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 58/234 (24%), Gaps = 33/234 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVF 59
               +I D ET G D   D   +   V        + S       C+          A  
Sbjct: 64  PQRLLILDTETTGLDPERDHCIEVGAVLFHVSSRAVLSQLSLLLPCQ-------SNTAEA 116

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GI      R             +  +  +  +I  +N  FD  +              
Sbjct: 117 INGI-DAAVSRLEQPWQAGLLYFQELVASAD--VIVAHNAAFDRAWFGRG---------- 163

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                       L  +   +  S D ++WPS      +  ++DLALA GI    AH A  
Sbjct: 164 -----------PLPAIDKPWLCSMDDLRWPSERRLKATPSVRDLALAYGIPVWAAHRALT 212

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
           D      +     +        L   R                         A 
Sbjct: 213 DCIYLAQVFERCEDLNSLFLAGLEPRRLYRAELPYDQRHRAREAGFRWNDPVAK 266


>gi|29833361|ref|NP_827995.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610484|dbj|BAC74530.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 241

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 53/190 (27%), Gaps = 18/190 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  D          V              A  + G+T + 
Sbjct: 12  FDTETTGVDVETDRIVSAAVVVQDAPG---ARPRVSRWLVNPGVPVPAGATAVHGLTDEH 68

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             R+G   +     I +           ++  N   FD         R+           
Sbjct: 69  LQRNGRWPSPVMDEIARELGEQATAGRPLVVMNAP-FDLTLLDRELRRH----------- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S  D       +    P  +             L DL     +    AHDA AD  A 
Sbjct: 117 RASCLDHWFESAPLRVLDPRVLDKHLDRYRKGRRTLTDLCAHYDVALEGAHDAAADALAA 176

Query: 185 LALVWLIREK 194
           + +V  +  +
Sbjct: 177 MEVVRAVGRR 186


>gi|332366322|gb|EGJ44074.1| DNA polymerase III [Streptococcus sanguinis SK1059]
          Length = 267

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 32/207 (15%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
            AD  AT  L   I++K   L + L +
Sbjct: 152 LADAQATAQLFLKIQDKIKSLPKALVE 178


>gi|290956499|ref|YP_003487681.1| DNA exonuclease [Streptomyces scabiei 87.22]
 gi|260646025|emb|CBG69116.1| putative DNA exonuclease [Streptomyces scabiei 87.22]
          Length = 239

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 42/144 (29%), Gaps = 7/144 (4%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R      V   R  E+I   E              EAV + GIT  +
Sbjct: 11  FDLETTGTDPREARIVT-GAVIEVRDGERIGHREWLA---DPGVEIPEEAVAVHGITNAR 66

Query: 68  ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR-WSWDN 124
           A+ +G      +  I             +   N  FD         R+   S R     +
Sbjct: 67  AVAEGRPADRVADAIADVLVSYWRTGVPVVAYNAAFDLSLLSAELRRHALPSLRDRLGTD 126

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQW 148
                D   + R++  +       
Sbjct: 127 PAPVIDPYTIDRSVDRYRRGKRNL 150


>gi|171463544|ref|YP_001797657.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193082|gb|ACB44043.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 236

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 58/204 (28%), Gaps = 27/204 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           VI D ET G + A  DR  +   + +       +    F      +   D  A  + G++
Sbjct: 4   VILDTETTGLNPATGDRIIEIGCIEM-VGRRLTDR--TFHYYINPERDIDAGAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F+  + Q     +   I  +N  FD  +  N F       +      
Sbjct: 61  REFLSDKPI----FANIVEQLIEFVDGAEILIHNAAFDLGFLDNEFALLKRPPF------ 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADVY 182
                      R + +   D +    +        L  L        +H   H A  D  
Sbjct: 111 -----------RNLASKITDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQ 159

Query: 183 ATLALVWLIREKKPKLFEYLYDYR 206
               +   +   +  L   L DY 
Sbjct: 160 LLAEVYVAMTRGQEDLSIDLIDYT 183


>gi|322419698|ref|YP_004198921.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18]
 gi|320126085|gb|ADW13645.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18]
          Length = 314

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 47/186 (25%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITG 62
           +  D ET G +   D+  +   V    D    +I      +       +   PE   ITG
Sbjct: 57  ICLDTETTGLNHKEDKVIELGIVAFEFDPLSGEIYRISDRYSGFEDPGFPIPPEVREITG 116

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ +           F        +     +I +N      +                  
Sbjct: 117 ISDEMVRGQ-----AFDDAFVDLLAGKADLVIAHNAAFDRKFVETRFPAFKKLPW----- 166

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                              +    Q     +  +S  L  L    G   +NAH A  D  
Sbjct: 167 -------------------ACTVCQIDWSAERLSSRTLDFLLFKTGSLTINAHRALDDAE 207

Query: 183 ATLALV 188
             L L+
Sbjct: 208 GVLGLL 213


>gi|217978759|ref|YP_002362906.1| DNA polymerase III subunit epsilon [Methylocella silvestris BL2]
 gi|217504135|gb|ACK51544.1| Exonuclease RNase T and DNA polymerase III [Methylocella silvestris
           BL2]
          Length = 222

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 19/192 (9%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G D   D     A V++     +I ++E F      +   + EA+ +  +  
Sbjct: 33  VAFDCETTGLDPRRDDIITIAAVKIR--GNRILTSERFEAVIRPEARMNAEAIKVHRLRE 90

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                 G    +   +   F       +IGY                         +  G
Sbjct: 91  ADV-EAGKRIEKIMPQFLHFI--GGRPLIGYYLEFDVRMID--------------KYLLG 133

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               +L + +  +     +     +            +     +  ++ HDA  D   T 
Sbjct: 134 LLGIELPNPLIEVSNLYYERKYGDAPPGATIDLSFAAILKDLDLPMLDQHDAFNDALMTA 193

Query: 186 ALVWLIREKKPK 197
            +   +R+ K +
Sbjct: 194 MIYIKLRDMKER 205


>gi|325687825|gb|EGD29845.1| DNA polymerase III [Streptococcus sanguinis SK72]
          Length = 814

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCGLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREK 194
            AD  AT  L   I++K
Sbjct: 152 LADAQATAQLFLKIQDK 168


>gi|91079959|ref|XP_969470.1| PREDICTED: similar to three prime repair exonuclease 1 [Tribolium
           castaneum]
 gi|270003252|gb|EEZ99699.1| hypothetical protein TcasGA2_TC002459 [Tribolium castaneum]
          Length = 319

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 3   NHFVIYDYETFG---RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP----ADDYLPDP 55
             FV  D ET G    +    R  +   V V     ++        K         +  P
Sbjct: 32  KTFVFLDLETTGLPHLEHNKTRITELCAVSVRADHIELGCFPRVQNKLSLCFNPMKMISP 91

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYR 112
           EA  +TG++           ++    I ++        C++ +N  RFD    R    +
Sbjct: 92  EATSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPICLVAHNGNRFDYPILRAEVEK 150


>gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
 gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
          Length = 443

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 29/191 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M       D ET   +   +  +    + VD            +     +   D   + +
Sbjct: 1   MEQSITFVDVET--PNYQNNSISSIGVINVDGDGVVT----TKYFLVDPEAHFDRFNIEL 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP+          E    I  +F+     ++  +N  FD         R     +  
Sbjct: 55  TGITPEMVADQP-NFKEVWSEIEPYFTNS---LVVAHNAVFDLSVISACLQRYDLPIFPI 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            +             R   A              + S+KL DL+    +   N H+A AD
Sbjct: 111 FYT---------CTYRISRALKI----------PSNSYKLNDLSSYYHVTLDNHHNALAD 151

Query: 181 VYATLALVWLI 191
             A + + + +
Sbjct: 152 SKACMEIFYYL 162


>gi|108563906|ref|YP_628222.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPAG1]
 gi|107837679|gb|ABF85548.1| DNA polymerase III epsilon subunit [Helicobacter pylori HPAG1]
          Length = 323

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 109 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 162

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 163 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 296


>gi|213582095|ref|ZP_03363921.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 172

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 30/184 (16%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L   V    F+  + +F        +  +N  FD  +    F     D  + 
Sbjct: 69  HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           +        D L + R ++                    L  L     I++     H A 
Sbjct: 125 N--TFCKVTDSLALARKMFPG--------------KRNSLDALCSRYEIDNSKRTLHGAL 168

Query: 179 ADVY 182
            D  
Sbjct: 169 LDAQ 172


>gi|21702589|gb|AAM75986.1|AF481102_22 DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 203

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 51/204 (25%), Gaps = 26/204 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +V+ D ET G      R A+   V +        +   F             A  +
Sbjct: 1   MQTRYVVLDTETTGLSPRYHRLAEVGCVEI-ACGRITGNF--FHSYINPRQRMTRGAQAV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             +  +            ++R+  F        +  +N+ FD  +         +     
Sbjct: 58  HRLRDEFLAEQP-TFRAIAQRLLFFLCRS---TLVGHNLSFDLNFLDAGLATAGF----- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAK 178
                      +   R  +      +   ++      F L       G+   +   H A 
Sbjct: 109 -----------MPAARYCHGVIDTMLHL-AQRGRRRRFSLDACCDRLGVRRGDRARHGAL 156

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
            D         + +   P +  + 
Sbjct: 157 EDAVLLAEAFVVAKRTLPPIGYHC 180


>gi|319779076|ref|YP_004129989.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
 gi|317109100|gb|ADU91846.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
          Length = 186

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 57/195 (29%), Gaps = 14/195 (7%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +V  D ET G    L  R  +   V V    +      ++F     D   D  A  +  I
Sbjct: 3   YVCLDTETTGSKYYLGHRIIELGCVEVICGQKSGRELHMYF---NPDRRSDFGAFRVHKI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +  L      A+    I  F        +  +N  FD  +    F  +          
Sbjct: 60  SDEFLLDKPR-FADCVDEIIDFLY---GSTLVIHNAPFDMGFLNYEFKISGQP------K 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D++D +       P  +    R      +K    +  N   H N H A  D   
Sbjct: 110 LNEFVVDVIDTVILGRMKLPKKLHPNQRYSLDALYKTLVRSDYNPALHRNPHGALIDARM 169

Query: 184 TLALVWLIREKKPKL 198
              L   +   + ++
Sbjct: 170 LADLFIRLNMGQEEI 184


>gi|298498457|ref|ZP_07008264.1| gp39 [Vibrio cholerae MAK 757]
 gi|297542790|gb|EFH78840.1| gp39 [Vibrio cholerae MAK 757]
          Length = 188

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 22/193 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +I D ET G D    R  + + +  D Q        ++           PE   I G
Sbjct: 10  DNAIILDTETTGLDSD-ARILEVSII--DAQTGIK----LYSSLVNPLCSISPEVTAIHG 62

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    +       +    I  + S  ++ I  YN       +   +F ++         
Sbjct: 63  ITNDMVIDMP-TFDKVWNDIKGYLS--DSVIYVYN-----LDFDYRMFAQSLRPFGYPVA 114

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALANGIEHVN--AHDAKA 179
           +  +     + VMR    F          +D    F +L +      ++  +  AH A A
Sbjct: 115 NLVHFFGGGVCVMRWYANFYGSLC----GNDVTPRFQRLTNACYQQDVDTSDLTAHRALA 170

Query: 180 DVYATLALVWLIR 192
           D   T  L+  + 
Sbjct: 171 DCEMTRRLINAVN 183


>gi|114762190|ref|ZP_01441658.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Pelagibaca bermudensis HTCC2601]
 gi|114545214|gb|EAU48217.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Roseovarius sp. HTCC2601]
          Length = 229

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 57/196 (29%), Gaps = 29/196 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V     +  + + E +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFEPETGDRIVEIGAV---ELYNHVPTGETYHQYINPERSMPQEAFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    F++ + +F        +  +N  FD  +       +           
Sbjct: 61  DDFLRDKPL----FAQIVDEFLEFIGDSKLVIHNATFDVKFLNAELGWSKRPLLP----- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +  SP                L  L    GI++ +   H A  D  
Sbjct: 112 KDCAVDTLAIARRKFPGSPA--------------SLDALCRRFGIDNSSRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKL 198
               +   +   K   
Sbjct: 158 ILADVYLELIGGKQPD 173


>gi|254383630|ref|ZP_04998980.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194342525|gb|EDX23491.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 241

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 44/166 (26%), Gaps = 18/166 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A +  +                       P A  + G+T   
Sbjct: 12  FDTETTGVDVEQDRIVSAALIVQECAG---GRVRSTRWLVNPGIPVPPGATEVHGLTDDH 68

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             R+G   A     I +           ++  N   FD         R+   S     DN
Sbjct: 69  LQRNGRWPAPVVEEIARALGEQLVAGRPVVVMNAP-FDLTLLDRELRRHRASSLARYLDN 127

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
                      R +    P  +             L DL    GIE
Sbjct: 128 -----------RPLTVLDPRVLDKHLDRYRKGRRTLTDLCAHYGIE 162


>gi|254425359|ref|ZP_05039077.1| exonuclease family [Synechococcus sp. PCC 7335]
 gi|196192848|gb|EDX87812.1| exonuclease family [Synechococcus sp. PCC 7335]
          Length = 273

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 60/216 (27%), Gaps = 23/216 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
             + D ET G      R  + + V      + +E  E +                ITGIT
Sbjct: 31  LTVVDVETTGALGHNARVIEVS-VLHASLADGLEHQESYL--INPQVKIPEYITRITGIT 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+        E E   +           +   +N+ FD  + R  + R     Y      
Sbjct: 88  PEMVYSSPPPE-EIWPKCQPLLE--GDRVFTAHNLDFDYSFLRTEYKRLGIRFY------ 138

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +        D            S  L +L      +   +H A+AD  A 
Sbjct: 139 -KPPLQKLCTVILSRMLLADL----------PSRSLPNLIKHFNFDIDTSHRAEADTKAC 187

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
             L   +  +     +     R   Q  +L D   +
Sbjct: 188 WLLAKTLLTQIQNEDDETLLKRFGQQWIRLQDAAKI 223


>gi|298737180|ref|YP_003729710.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
 gi|298356374|emb|CBI67246.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
          Length = 323

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 61/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 109 FSFIDLETTGSCPIKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 162

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 163 TYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPK 296


>gi|29828689|ref|NP_823323.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29605793|dbj|BAC69858.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 240

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 45/165 (27%), Gaps = 16/165 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R      V   +  E +   E              +AV + GIT ++
Sbjct: 11  FDLETTGTDPREARIVT-GAVIEVKGQEPVGRREWLA---DPGVEIPADAVAVHGITNER 66

Query: 68  ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G      +  + Q           +   N  FD         R    S        
Sbjct: 67  AAAEGGPPDRVAESLAQTLVGYWRTGVPVVAYNATFDLTLLSAELRRYGLPSL------- 119

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
             R D  D    I  ++ D               L+ +    G+ 
Sbjct: 120 RERLDGRDPAPVIDPYTIDRW---VDRYRRGKRNLEAVCTEYGVP 161


>gi|15645997|ref|NP_208178.1| DNA polymerase III subunit epsilon [Helicobacter pylori 26695]
 gi|2314554|gb|AAD08426.1| DNA polymerase III epsilon subunit (dnaQ) [Helicobacter pylori
           26695]
          Length = 350

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 109 FSFIDLETTGSCPIKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 162

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 163 TYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPK 296


>gi|300933403|ref|ZP_07148659.1| exonuclease, RNase T and DNA polymerase III [Corynebacterium
           resistens DSM 45100]
          Length = 1144

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 28/193 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G     DR  +   V +D+     E T     +P  D        F+ 
Sbjct: 4   PQRYAVIDLETTGFSK-TDRVIEIGVVLLDQAGNV-ERTWETIVQPNRDIPNS----FVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            +TP   +   +    F     +   + +   I  +N  FD  +  + F R       + 
Sbjct: 58  KLTPSHLVHAPL----FEEIAEELAEILHGRTIIAHNAPFDIRFLTSEFERIGVALPAY- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
              G    D L + R  +  +                 L+ +    GI +   H A AD 
Sbjct: 113 ---GAWVHDTLPLCRQCFPGTNG--------------SLEKVTKLLGITNDRPHAALADA 155

Query: 182 YATLALVWLIREK 194
            AT  +   +R  
Sbjct: 156 LATAEIYRHLRND 168


>gi|251782080|ref|YP_002996382.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390709|dbj|BAH81168.1| ATP-dependent DNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 820

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 100/336 (29%), Gaps = 38/336 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT  + + D E      A     Q   V ++ + E +E+ +                  +
Sbjct: 5   MTRKYAVVDLEATNAG-ATAAIIQVGIVIIEGK-EVVETYQT---DINPHEPLSDHIKAL 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  +  +     ++ ++ I++  S    C+   +N++FD        +   Y+    
Sbjct: 60  TGITDAQLAQAPE-FSQVAKTIYELISD---CVFVAHNVKFDANLLAEALFFEGYELLT- 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R D +++ +  Y                  + L  L+   G+E   AH A AD
Sbjct: 115 ------PRVDTVELAQIFY-------------PSLEKYTLGHLSAELGLELEEAHTAIAD 155

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT AL   + +K   L +   +         L +   +             R+   L 
Sbjct: 156 ARATAALFIKLLQKIESLPKECLESLLPYADSLLFETAMVIEQGFNQAKPYNPRTYVHLG 215

Query: 241 APVAWHPRYK---------DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291
             +      +            I   L G     +     QL +  +             
Sbjct: 216 KMLLPKHLKRQSSPYQLSKQFAINMALLGLEERSKQASFAQLIEADYHQRQASFIEAQTG 275

Query: 292 IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLEN 327
           I + +    P+L   D  +        I   + + N
Sbjct: 276 IGKTYGYLLPLLAQEDQSQIIVSVPTKILQDQLMAN 311


>gi|90961663|ref|YP_535579.1| ATP-dependent helicase DinG [Lactobacillus salivarius UCC118]
 gi|90820857|gb|ABD99496.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius
           UCC118]
          Length = 929

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 70/226 (30%), Gaps = 28/226 (12%)

Query: 5   FVIYDYETFG-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G +    D+  QF+   V    + +                  E   +TGI
Sbjct: 7   YAVVDLETTGPKQDGSDKIIQFSCDFVQSN-KIVNHFSTL---INPGMPIPVEVKKLTGI 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E +  I+             +N+ FD  +  +   R  Y        
Sbjct: 63  KDKDVRYAPY-FDEVAGTIYAMLQN---TTFVAHNVNFDYSFLSSELERAGYPELE---- 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++D ++      P             S++L D++    + H++ H A +D  A
Sbjct: 115 -----LPMMDTVQLTQIIYPTL----------VSYRLIDISKYLQLSHIHPHKADSDTKA 159

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
           T  L+  ++++       L     K     +         V+++  
Sbjct: 160 TAELLINLKKRIETFPLILLQRLAKMGDSLIAQTGEFFNEVYLTKK 205


>gi|67459827|ref|YP_247450.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|67005360|gb|AAY62285.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis
           URRWXCal2]
          Length = 377

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 58/209 (27%), Gaps = 31/209 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  D ET G     D+  +   V+ +        +  +                  +TGI
Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQQPIPLRITELTGI 185

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       ++ E   +  +     N  II  +N  FD  +                  
Sbjct: 186 TDEMVQGK-AIDQEAVTQFLE-----NVDIIIAHNASFDRPF------------------ 221

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +D + +     A+         + +   S KL+ LA      +         +  
Sbjct: 222 -----FDKMFLHLPPKAWGCSRADIDWKAEKIESHKLEYLAYKYNFFYEGHRAVTDCLAG 276

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLR 212
              L   +   K  + + L    NK + +
Sbjct: 277 LHLLAQTLPIAKQPVLKQLLVNCNKTRFK 305


>gi|325689970|gb|EGD31974.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK115]
          Length = 814

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 32/207 (15%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q   V +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIVLI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCNLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
            AD  AT  L   I++K   L + L +
Sbjct: 152 LADAQATAQLFLKIQDKIKSLPKALVE 178


>gi|239948068|ref|ZP_04699821.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922344|gb|EER22368.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 251

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 56/208 (26%), Gaps = 31/208 (14%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
             D ET G     D+  +   V+ +           E F           P    +TGIT
Sbjct: 2   FLDTETTGLSYVTDKILELGMVKFEYTNDGRIYNILEEFNQYQDPKEPIAPHITELTGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      + + E    +       N  II  +N  FD  +               +   
Sbjct: 62  DEMVRDQNINKEEVINFLQ------NVSIIIAHNAGFDRPFFDK------LFPDLTTKIW 109

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G +R D                    + +   S KL+ LA      +         +   
Sbjct: 110 GCARLD-----------------IDWKYEKIESQKLEYLAYKYNFFYEGHRAVIDCLAGL 152

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLR 212
             L   +   K  + + L    +K + +
Sbjct: 153 HLLSQYLPVSKELVLKQLLMNYHKTRFK 180


>gi|161507623|ref|YP_001577577.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571]
 gi|160348612|gb|ABX27286.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571]
          Length = 927

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 28/205 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F + D ET G          QF    + +  + +++           +      V +
Sbjct: 7   KDTFAVVDLETTGTQREKGHHIIQFGCAII-KNMKVVKTYS---FMINPHHEIPQSVVNL 62

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  +         + ++ +I +        +   +N+ FD  +      ++ Y++   
Sbjct: 63  TGIHNEDVQGKD-DFSVYAPKIIEILK---GTVFVAHNVDFDLPFLNYELVQHGYEAL-- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                N   D +++ +  +                 S+KL DL     I+H+N H A +D
Sbjct: 117 ----TNKAIDTVELAKIAF-------------PTLPSYKLSDLTAQLKIKHLNPHKADSD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205
            Y T  L+  I  K   L +   + 
Sbjct: 160 AYGTAVLLIKIIHKLESLPQATLNT 184


>gi|307943432|ref|ZP_07658776.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4]
 gi|307773062|gb|EFO32279.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4]
          Length = 239

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 53/184 (28%), Gaps = 29/184 (15%)

Query: 8   YDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           +D ET G +    DR  +  GV     W  I + + +            EA  + G++ +
Sbjct: 6   FDTETTGLNPRGGDRLVEIGGV---ELWNHIPTGKSYHVYINPQRDMPEEAFRVHGLSEE 62

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +  + +     F        +  +N  FD  +      R+             
Sbjct: 63  FLSDK-QLFDQVADEFLDFV---GDATLVIHNAAFDMGFINMELERSGRRIISNDQ---- 114

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYAT 184
              D LD+ R  +   P+               L  L    GI++     H A  D    
Sbjct: 115 -VLDTLDLARRKHPTGPN--------------SLDALCSRYGIDNSKRVKHGALLDAEIL 159

Query: 185 LALV 188
             + 
Sbjct: 160 AEVY 163


>gi|16272104|ref|NP_438306.1| DNA polymerase III subunit epsilon [Haemophilus influenzae Rd KW20]
 gi|1169396|sp|P43745|DPO3E_HAEIN RecName: Full=DNA polymerase III subunit epsilon
 gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae
           Rd KW20]
          Length = 256

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 60/203 (29%), Gaps = 31/203 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +          D   DP+A+ +
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNXHIYIKPDRPXDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          E ++    + +     I   +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKPE-FKEVAQDFLDYINGAELLI---HNAPFDVGFMDYEFRKLNLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
            D      +  ++   +  LF+ 
Sbjct: 164 LDAEILADVYLMMTGGQTNLFDE 186


>gi|145631632|ref|ZP_01787397.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|144982766|gb|EDJ90295.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
          Length = 256

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 31/203 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +            +   V       +  +   F      D   DP+A+ +
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAV---ELINRRYTGNNFHIYIKPDRSVDPDAIKV 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +          E ++    + +     I   +N  FD  +    F +   +    
Sbjct: 65  HGITDEMLADKPE-FKEIAQDFLDYINGAELLI---HNAPFDVGFMDYEFRKLDLNVKT- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
             D+     D L + R +Y                    L  L    GI++     H A 
Sbjct: 120 --DDICLVTDTLQMARQMYPG--------------KRNNLDALCDRLGIDNSKRTLHGAL 163

Query: 179 ADVYATLALVWLIREKKPKLFEY 201
            D      +  ++   +  LF+ 
Sbjct: 164 LDAEILADVYLMMTGGQTNLFDE 186


>gi|46578859|ref|YP_009667.1| exonulcease [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448271|gb|AAS94926.1| exonulcease, putative [Desulfovibrio vulgaris str. Hildenborough]
          Length = 244

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 16/191 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D E  G     D     AGV +  +         F  K      P+ +A+ + G+
Sbjct: 40  TFVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGR--CFEAKMRPHLPPEEDAIAVHGL 97

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P +        AE       F    ++   G++      +              R + D
Sbjct: 98  LPDETATHDDP-AESLAAFRTF--CGDSVPAGWHVGLDAAFLDAAAQRHGVRPWPRRTLD 154

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +R ++      +   +         L  +A    I+  +AHDA  D + 
Sbjct: 155 -----------VRGLHLALRHRLPARAAALATKDADLYAVARVFDIDVADAHDATGDAWL 203

Query: 184 TLALVWLIREK 194
           T  ++  +   
Sbjct: 204 TALVLQRLLVH 214


>gi|154245775|ref|YP_001416733.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154159860|gb|ABS67076.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 240

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V       +I +  VF      +     EA  + G++
Sbjct: 4   IVLDTETTGLEAYGGDRLVEIGCV---EMVNRILTGTVFHVYINPERDMPVEAFNVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          + +     F +      +  +N  FD  +      R    +       
Sbjct: 61  AEFLSDKPK-FKDVADEFLNFIAE---DTLVIHNAAFDIGFLNAELERLGRPTIAR---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +    +              +L DL    GI+      H A  D  
Sbjct: 113 -DRVVDTLALARRKHPGGGN--------------RLDDLMNRYGIDSSRRVKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|311232722|gb|ADP85576.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris
           RCH1]
          Length = 251

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 16/191 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D E  G     D     AGV +  +         F  K      P+ +A+ + G+
Sbjct: 47  TFVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGR--CFEAKMRPHLPPEEDAIAVHGL 104

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P +        AE       F    ++   G++      +              R + D
Sbjct: 105 LPDETATHDDP-AESLAAFRTF--CGDSVPAGWHVGLDAAFLDAAAQRHGVRPWPRRTLD 161

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +R ++      +   +         L  +A    I+  +AHDA  D + 
Sbjct: 162 -----------VRGLHLALRHRLPARAAALATKDADLYAVARVFDIDVADAHDATGDAWL 210

Query: 184 TLALVWLIREK 194
           T  ++  +   
Sbjct: 211 TALVLQRLLVH 221


>gi|325125846|gb|ADY85176.1| DNA polymerase III, epsilon subunit [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 286

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 31/205 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + ++D ET G+     +  Q   ++V    + +     +          +     +TGI+
Sbjct: 33  YTVFDLETTGK-----KIIQIGALKVRDD-QTVAKFSTY---VNPLEKINDYVSHLTGIS 83

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +     +++ E       F    +  ++G+N + FD     +             +  
Sbjct: 84  NYQTDAAPLID-EVMPDFLDFV--GDDTLVGHNILSFDCNVLADNG-----------YPV 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N + D L         +    +     D  ++ +L  L    GI   N+H A +D    
Sbjct: 130 ANPKLDTL-------LLANSYKKRGLFADPISNVRLSTLKEYYGINI-NSHIAISDCITN 181

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
             +   +R+        + D+  K 
Sbjct: 182 NIVYQKLRDGDLAKATEIIDFTPKQ 206


>gi|148242440|ref|YP_001227597.1| DNA polymerase III epsilon subunit [Synechococcus sp. RCC307]
 gi|147850750|emb|CAK28244.1| DNA polymerase III epsilon subunit [Synechococcus sp. RCC307]
          Length = 264

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 29/191 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  +I D ET G D  +D+  +   +        + +   F      +      A  + G
Sbjct: 38  DQLLILDTETTGLDPEVDQVLEVGAILFSVPQRAVLAQLSFLLPVEAN-----AAEPLNG 92

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I    A +         + + QF S     +   +N  FD  +  +              
Sbjct: 93  IRAG-ATQAPQPWQPSLQLLQQFASCAQ--LAVAHNAAFDRQWFGHGA------------ 137

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L  +   +  + + I WP+         ++DLALA G+    AH A  D  
Sbjct: 138 ---------LPDLPLPWLCTMEDIHWPADRLLRPRPSVRDLALAYGVPVWAAHRALTDCI 188

Query: 183 ATLALVWLIRE 193
               +     +
Sbjct: 189 YLAQVFERCDQ 199


>gi|294506958|ref|YP_003571016.1| DNA polymerase III polC-type [Salinibacter ruber M8]
 gi|294343286|emb|CBH24064.1| DNA polymerase III polC-type [Salinibacter ruber M8]
          Length = 258

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 28/197 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            V +D E  G D    R  Q    R         ++           +         +TG
Sbjct: 17  LVFFDLEATGTDPQAARIIQIGMQRFVPSEDGAALDE--TIDVLVDPEEEIPAAVTDLTG 74

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ++P    +          RI    +  +  + GYN + +D    +  F R+       + 
Sbjct: 75  LSPDAVRQAP-PLGAHLDRIAPLLADAD--LAGYNALAYDIPLLQAEFERHG-----RTL 126

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-GIEHVNAHDAKADV 181
              + R  +LD  R      P                L  L     G    +AHDA +DV
Sbjct: 127 PGPDDRV-VLDPYRLEQVLRPRT--------------LSALYERYTGDALDDAHDALSDV 171

Query: 182 YATLALVWLIREKKPKL 198
            A   ++          
Sbjct: 172 EAAGRVLQRQLADHDID 188


>gi|310817168|ref|YP_003965132.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
 gi|308755903|gb|ADO43832.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
          Length = 224

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 54/194 (27%), Gaps = 29/194 (14%)

Query: 9   DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           D ET G +    DR  +   V +         T   +  P  D     +A  + G++ + 
Sbjct: 2   DTETTGFEPETGDRIVEIGCVELLNHL-PTGRTYHQYINPQRDM--PEDAFKVHGLSAEF 58

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                +  A+ ++    F    N   +  +N  FD  +                      
Sbjct: 59  LSDKPL-FAQVAQDFLDFIGDAN---LVIHNAAFDVKFLNAELGWVKKPLIA-----PAR 109

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATL 185
             D L + R  +  + +               L  L    GI++     H A  D     
Sbjct: 110 AVDTLLIARRRFPGAQN--------------SLDALCRRFGIDNSKRTLHGALLDSEILA 155

Query: 186 ALVWLIREKKPKLF 199
            +   +   +   F
Sbjct: 156 EVYLELIGGRQPDF 169


>gi|300214468|gb|ADJ78884.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius CECT
           5713]
          Length = 929

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 70/226 (30%), Gaps = 28/226 (12%)

Query: 5   FVIYDYETFG-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G +    D+  QF+   V    + +                  E   +TGI
Sbjct: 7   YAVVDLETTGPKQDGSDKIIQFSCDFVQSN-KIVNHFSTL---INPGMPIPAEVKKLTGI 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E +  I+             +N+ FD  +  +   R  Y        
Sbjct: 63  KNKDVRYAPY-FDEVAGTIYAMLQN---TTFVAHNVNFDYSFLSSELERAGYPELE---- 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  ++D ++      P             S++L D++    + H++ H A +D  A
Sbjct: 115 -----LPMMDTVQLTQIIYPTL----------VSYRLIDVSKYLQLSHIHPHKADSDTKA 159

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
           T  L+  ++++       L     K     +         V+++  
Sbjct: 160 TAELLINLKKRIETFPLILLQRLAKMGDSLIAQTGEFFNEVYLNKK 205


>gi|260767723|ref|ZP_05876658.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260617232|gb|EEX42416.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 222

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 16/204 (7%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G D   D       V +    + I   E  +         DP+ V +  I PQ 
Sbjct: 35  LDIETSGLDAEHDHIVSIGWVPIVN--QVIRLAEARYFLITPSGQNDPQQVVLHHIMPQM 92

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
             R G+     ++ I   F+     ++  +    +  +  +   ++ +      W     
Sbjct: 93  -QRQGIP---LAQAIELLFTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDLPIVW----- 143

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D L + +A   ++P  +   + +D    ++L  +     +    AH A +D  AT  L
Sbjct: 144 -LDTLKIEQAYAQYAPYNMPHSNAND----WRLSTVRKRYHLPAYQAHHALSDAIATAEL 198

Query: 188 VWLIREKKPKLFEYLYDYRNKNQL 211
               + +         +   K  +
Sbjct: 199 YLAQQNRLFAKAYVPLELLMKASV 222


>gi|167621824|ref|YP_001676609.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
 gi|167351565|gb|ABZ74295.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 299

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 46/178 (25%), Gaps = 32/178 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  D ET G++   D   + A V  + D           F            E   ITGI
Sbjct: 47  IYLDVETTGKNPVRDEIIELAMVPFQYDEAGRLCGVGAPFVALREPSAPISAEITRITGI 106

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +  A  +  I          +I  +N  FD  ++                 
Sbjct: 107 TNAMVAGQSIDPAMVAAFI------APAAVIVAHNASFDRRFTER--------------- 145

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                            ++    Q     +G    KL  LA   G      H A+ D 
Sbjct: 146 --------FCEAFQAKGWACSMSQVDWAGEGFEGTKLSYLASQCGFFFDG-HRAENDC 194


>gi|237748400|ref|ZP_04578880.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
 gi|229379762|gb|EEO29853.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
          Length = 327

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 61/212 (28%), Gaps = 41/212 (19%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVR-----VDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
            V  D ET G    +D   +   V+        +   IE     +          P    
Sbjct: 78  IVFLDTETTGLSSDMDVIIELGLVKALFSPTAHRLVSIERIVSAYE--DPGKPITPFITE 135

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT        + E   +  +       +  +I  +N  FD  +     +R F     
Sbjct: 136 LTGITDDMVRGKRIDETMVAGFL------DDAVLIVAHNAAFDRPFFEK-RFRGF----- 183

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                                ++   +       G  + KL++L L +G     AH A  
Sbjct: 184 -----------------EEKKWACSLVGIDWNGLGFKNLKLEELVLKSGY-FYEAHRACI 225

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
           D  A   L+      +P  F  L     K  +
Sbjct: 226 DCLALAWLL----HCQPDAFASLLKQAEKRTV 253


>gi|45358454|ref|NP_988011.1| exonuclease [Methanococcus maripaludis S2]
 gi|44921212|emb|CAF30447.1| Exonuclease [Methanococcus maripaludis S2]
          Length = 191

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 57/189 (30%), Gaps = 12/189 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G      + AQ + +  D      +    ++            A  + G+T
Sbjct: 2   YVFLDTETTGLHP--GQIAQLSYLVTDEDLNLKKVFNQYYSV----DHMSRSAAKVHGLT 55

Query: 65  PQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            +    L +G+   +    +          +I  +NI FD  + +  F R   +      
Sbjct: 56  VEILDELSNGMTFEDTVDEVRDDLEDS---VIIGHNISFDIRFLKAEFERLGPEYVPKDK 112

Query: 123 DNGNSRWDLLDVMR-AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 +  +  +        P  ++     +   +  L+    A G   V  HDA+ D 
Sbjct: 113 FCTMFHFTPICKLPGQKRYKRPKLVELMEFLEQCPNEGLEFTKKAYGCSDVGFHDARYDT 172

Query: 182 YATLALVWL 190
                    
Sbjct: 173 GILYLCYKK 181


>gi|251772732|gb|EES53294.1| DNA polymerase III, epsilon subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 288

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 50/184 (27%), Gaps = 36/184 (19%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +  D ET G     D R  +   + V   +   E                P    I 
Sbjct: 29  EDLLFVDVETTGLLFENDARIVEIG-ISVWDSFGLKERMTSL---INPGSPIPPMYTRIH 84

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPN----TCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           GI                    +F+          ++  +N+ FD         R     
Sbjct: 85  GIDDVMVEHSPT--------FLEFWMENGIRFQGKVVIAHNLSFDMGMINRELMRRDMAP 136

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                  GN   D + +++             S      + KL  LA + G+ H + H A
Sbjct: 137 L------GNPGIDTVPILK-------------SLLPREKNHKLSHLAKSLGVRHDSRHRA 177

Query: 178 KADV 181
           + DV
Sbjct: 178 EDDV 181


>gi|84389766|ref|ZP_00991318.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
 gi|84376867|gb|EAP93741.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
          Length = 255

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 54/203 (26%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYETFGRDVAL------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              ++ D ET G +          R  +   V +            F      D     E
Sbjct: 21  KRIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEI-INRRLTGRH--FHVYIKPDRAIQEE 77

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ + GIT +  +     E +   +  +F        +  +N  FD  +    F      
Sbjct: 78  AIGVHGITDEFLIDKP--EYQDIHK--EFLDFIKGAELVAHNAPFDTGFMDYEFE----- 128

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
                    ++     D  +     +     +P          L  L    GI+  H   
Sbjct: 129 ------KLNSAIGKTDDYCKVTDTLAMAKKIFPG-----KRNNLDILCDRYGIDNSHRTL 177

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D      +  L+   +  
Sbjct: 178 HGALLDAEILADVYLLMTGGQTS 200


>gi|254448582|ref|ZP_05062041.1| ribonuclease T [gamma proteobacterium HTCC5015]
 gi|198261771|gb|EDY86057.1| ribonuclease T [gamma proteobacterium HTCC5015]
          Length = 212

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V +D   +   ++  T     +P      +P+++ ITG
Sbjct: 17  VVIDIETGGFNAQTDAVLEIAAVMIDMDHQGRLRVGETISTHVEPFQGANIEPKSLEITG 76

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E E   ++ +              I+  +N  FD  +      R  Y 
Sbjct: 77  IDLNNPLRGAVSEREALDKLLKPIRSAVKNHGCTRAILVGHNSFFDLNFLNAAIDRCTYK 136

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      +  +       +                     A   G  +  AH 
Sbjct: 137 RNPFHAFSSFDTVTIAGLAYGQTVLARACE-----------------AAGLGWNNSEAHS 179

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 180 AVYDAEQTARLFCKVINQ 197


>gi|300741873|ref|ZP_07071894.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa
           M567]
 gi|300381058|gb|EFJ77620.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa
           M567]
          Length = 230

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 24/178 (13%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFITGITP 65
           +D ET G DV   R    + + ++                           A  + GIT 
Sbjct: 11  FDLETTGVDVTTARIVTASLLLLNPDGSVQRAGEWLA-----NPGIEIPEGAASVHGITT 65

Query: 66  QKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + A   G    +    +         +   +   N  +D     +   R           
Sbjct: 66  EYARSHGQPAQQVIWEVAGAIGSLFLDGIPVIAFNAAYDFSVLHHEMLRYNI-------- 117

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                      + A +   P  I          + KL+ L   +G+   NAH +KAD 
Sbjct: 118 -------AHGELPAGHILDPYVIHKHVIPRKRGNRKLETLTAEHGVVLENAHTSKADA 168


>gi|153817923|ref|ZP_01970590.1| Gp39 [Vibrio cholerae NCTC 8457]
 gi|126511550|gb|EAZ74144.1| Gp39 [Vibrio cholerae NCTC 8457]
          Length = 184

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 22/193 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +I D ET G D    R  + + +  D Q        ++           PE   I G
Sbjct: 7   DNAIILDTETTGLDSD-ARIVEVSII--DAQTGIK----LYSSLVNPLCSISPEVTAIHG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    +       +    I  + S  +  I  YN       +   +F ++         
Sbjct: 60  ITNDMVIDMP-TFDKVWNDIKGYLS--DAVIYVYN-----LDFDYRMFAQSLRPFGYPVA 111

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALANGIEHVN--AHDAKA 179
           +        + VMR    F          +D    F +L +      ++  +  AH A A
Sbjct: 112 NLVRFFGGGVCVMRWYANFYGSLC----GNDVTPRFQRLTNACYQQDVDTSDLTAHRALA 167

Query: 180 DVYATLALVWLIR 192
           D   T  L+  + 
Sbjct: 168 DCEMTRRLINAVN 180


>gi|121603395|ref|YP_980724.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans
           CJ2]
 gi|120592364|gb|ABM35803.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas
           naphthalenivorans CJ2]
          Length = 220

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 14/188 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G +   D       VR+               +P    L   E+V +  +  
Sbjct: 43  VALDCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRL-SAESVRVHRLRE 101

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q     G+   E   ++  F    +  ++GY        +   +  R  +          
Sbjct: 102 QDVA-QGISADEAMMKLMYFI--GSRPLVGYY-----LEFDLAMINRVLFPMLGMGLPQP 153

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 ++V    Y +    +   +RD G+   + + L     +   +AHDA  D     
Sbjct: 154 K-----IEVSSMYYDYKFHQLPHHARDSGSIDLRFESLMKDLNLPLWSAHDALNDAIMAA 208

Query: 186 ALVWLIRE 193
                +R+
Sbjct: 209 LAFLKLRQ 216


>gi|126463657|ref|YP_001044771.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105321|gb|ABN77999.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 229

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 55/197 (27%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +   R  +   V     +  + +   +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFEPSEGHRIVEIGAV---ELFNHMPTGRTYHQYINPERPMPNEAFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V    F+     F        +  +N  FD  +      R+           
Sbjct: 61  DEFLRDKPV----FAAIGRAFLDFVGEARLVIHNAAFDMKFLNFELGRSGLPRLA----- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
            +   D L + R  +  +P                L  L    G+++     H A  D  
Sbjct: 112 PDQALDTLALARQRFPGAPAT--------------LDALCRRFGVDNSAREKHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 158 ILAEVYLELIGGRQPDF 174


>gi|241758776|ref|ZP_04756889.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
 gi|241320984|gb|EER57197.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
          Length = 245

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   +I D ET G      DR  +FAG+ +    +  +S    +  P  D     EA  
Sbjct: 1   MSQRQIILDTETTGLYPENGDRLVEFAGLEM-INRQMTDSNLHLYVHPERDM--PEEAAK 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          A+  ++I  F       I   +N +FD  +    F R    S 
Sbjct: 58  VHGLTIEVLEAKNAPPFAQVGKQIADFIRGAELII---HNAKFDVGFLNMEFRRMGLPSI 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G    D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCKVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRQQ 176


>gi|33861178|ref|NP_892739.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33639910|emb|CAE19080.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 270

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 58/191 (30%), Gaps = 29/191 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + +I D ET G D   D   +   +  +   + + S   F        +   EA  + G
Sbjct: 47  ENILILDTETTGLDENKDEIIEVGCILFNVNTKSVLSQVSFL-----FPVSSNEAEHVNG 101

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +         +      +     +  +I  +N+ FD  +                 
Sbjct: 102 IS-AEVTNIKQPWEDGLNFFLKLVDCSD--LIVAHNVEFDKKWFGKGR------------ 146

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L  +   +  S + I W  + +      + DLAL+  I   + H A +D +
Sbjct: 147 ---------LPKLEKKWICSLEDINWSFQKNLKNRPSVTDLALSFSIPVWSLHRALSDCF 197

Query: 183 ATLALVWLIRE 193
               +      
Sbjct: 198 YISEVFKKCEN 208


>gi|328885949|emb|CCA59188.1| putative DNA polymerase III epsilon subunit [Streptomyces
           venezuelae ATCC 10712]
          Length = 240

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 6/111 (5%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A +        +   +              +A  I GI+ ++
Sbjct: 11  FDLETTGTDPLEARIVT-ASIVGFHDGRVVRQRDWLA---DPGIRIPEQASAIHGISSER 66

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A  +G    E +  I +  +        +   N  FD         R+   
Sbjct: 67  AAAEGRPVREVADEIAETLTGYWNQGVPVVAYNASFDLTLLAAELRRHGLP 117


>gi|297578875|ref|ZP_06940803.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536469|gb|EFH75302.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 236

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 53/194 (27%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V    Q   +      +         + E++   GI
Sbjct: 46  SLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQ--ARYWLVKPSQPLEEESIVFHGI 103

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +     +  I+  +    +  + R            W   
Sbjct: 104 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRYIEREFLRQ------ISLNIWGEA 153

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q  +R     S +L    +   +   + H A  D  A
Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQRIARRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 212

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 213 TAELFQAQCAHHLP 226


>gi|281424647|ref|ZP_06255560.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
 gi|281401235|gb|EFB32066.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
          Length = 906

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 19/213 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
               I+D ET G DV  D   Q A V+V        S      + +D  +P+     +  
Sbjct: 505 ETITIFDTETTGLDVFHDDILQIAAVKVRNGAVVPGSALSLHLE-SDREIPEMLGDIVNP 563

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  ++  +  +   E  +R   +     T ++G+N       +      R          
Sbjct: 564 IIEERRNQTLLPRREALQRFVDY--ARGTVLLGHNADYDI--HILANNLRREMPETALPN 619

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +  +  +D L ++R +               G   +KL+ L     +E  N+H A ADV 
Sbjct: 620 ELSD-YFDSLHLIRLLR-------------PGLRQYKLKYLLEVLHLEGENSHLADADVN 665

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215
           AT +LV    +K  ++      +    ++++ I
Sbjct: 666 ATQSLVAFCYDKAKEVVGEQQAFIGHKRVQERI 698


>gi|163738000|ref|ZP_02145416.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           BS107]
 gi|163742604|ref|ZP_02149990.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161384189|gb|EDQ08572.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161388616|gb|EDQ12969.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 245

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 53/218 (24%), Gaps = 42/218 (19%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V        + + E F            +A  + GI 
Sbjct: 4   IVLDTETTGFDPFSGDRIVEIGAV---ELLNHMPTGETFHVYINPQRSMPQDAFKVHGIG 60

Query: 65  PQK-------------ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           P                    V  A+  ++   F        +  +N  FD  +      
Sbjct: 61  PDLLEPPQQPGPGAVTLRDKPV-FAKVGQKFLDFVRDSK---MVIHNAAFDMKFLNAELD 116

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                             D L + R  +  SP                L  L     I++
Sbjct: 117 WMGLPKLPMDQA-----VDTLAIARKRFPGSPAT--------------LDALCRRFNIDN 157

Query: 172 VNA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
            N   H A  D      +   +   +   F        
Sbjct: 158 SNRTLHGALLDSEILADVYLELIGGRQPDFGLSASNDK 195


>gi|298252829|ref|ZP_06976623.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis 5-1]
 gi|297533193|gb|EFH72077.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella
           vaginalis 5-1]
          Length = 337

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 27/192 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-------CKPADDYLPDP 55
            +FV+ D ET G +  +D+  +   V+     + IE  +               +     
Sbjct: 154 KNFVVIDCETTGLNSKVDKIIEIGAVKF-IDGK-IEEFQKLININCDSVSNFNKNNFILN 211

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           E + +TGIT       GV      +    F       ++GYN        S      +  
Sbjct: 212 EIIELTGITSSMLESYGVRLDLALKEFIDFVEKLP--VLGYNVQFD---MSFLNSALSSL 266

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
           D       + N  +D+   ++    F               +++L+ +     I     H
Sbjct: 267 DERFDHSLSINKIFDISRFVKKEKKFL-------------KNYQLKTVLHEYNIAESVPH 313

Query: 176 DAKADVYATLAL 187
            A  D   T  L
Sbjct: 314 RALLDARLTAHL 325


>gi|46198514|ref|YP_004181.1| hypothetical protein TTC0206 [Thermus thermophilus HB27]
 gi|55980543|ref|YP_143840.1| DNA polymerase III subunit epsilon [Thermus thermophilus HB8]
 gi|46196136|gb|AAS80554.1| hypothetical conserved protein [Thermus thermophilus HB27]
 gi|55771956|dbj|BAD70397.1| probable DNA polymerase III epsilon subunit [Thermus thermophilus
           HB8]
          Length = 247

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 29/198 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G    LD   +   +R++           F         P P    +TGI  
Sbjct: 74  VVLDLETTGLAPGLDEVIEVGLLRLEG-----GRRLPFQSLVRPSRPPSPFVERLTGIPR 128

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          E   + +   +      +  +N  FD  + R              +   
Sbjct: 129 EALEEAP-SLEEVLEKAYPLLAD---ATLVIHNAAFDLGFLRPALEGLG-------YRLE 177

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           N   D L + R                 G   + L  L+    +     H A  DV  TL
Sbjct: 178 NPVVDSLRLARRG-------------LPGLRRYGLDALSEVLELPRRTCHRALEDVERTL 224

Query: 186 ALVWLIREKKPKLFEYLY 203
           A+V  +            
Sbjct: 225 AVVHEVYYMLTSGRPRTL 242


>gi|18466779|ref|NP_569586.1| hypothetical protein HCM2.0114c [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16506095|emb|CAD09981.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 185

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 8   YDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
            D E+ G D  +  +  + A  R   + E  +  +    +       DP+A  + GI+ +
Sbjct: 8   VDIESTGLDFTSGHKIIEIAITRY--ELETQKHIDSLEMRFNPRRSIDPKAQAVHGISLE 65

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
               + +  A+ + +I  +    +  ++ +N   FD  + R+ F          S+    
Sbjct: 66  DLATEPL-LADHAGKIAAYMGACSA-LVAHNGEAFDLPFIRHEFG---------SYGVKL 114

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
               L+D M            W + D      +    +L    +   AH A  D    + 
Sbjct: 115 PDIPLVDSMLDG--------LWATEDGKRPRLEELAFSLGFTYDREKAHSALYDTDLMMQ 166

Query: 187 LVWLIREKK 195
             +  REK 
Sbjct: 167 CFFKAREKY 175


>gi|188528322|ref|YP_001911009.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
 gi|188144562|gb|ACD48979.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
 gi|308064307|gb|ADO06194.1| DNA polymerase III subunit epsilon [Helicobacter pylori Sat464]
          Length = 287

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----TELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|77464814|ref|YP_354318.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|221640733|ref|YP_002526995.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|77389232|gb|ABA80417.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Rhodobacter sphaeroides 2.4.1]
 gi|221161514|gb|ACM02494.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides KD131]
          Length = 229

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 54/197 (27%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +   R  +   V     +  + +   +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFEPSEGHRIVEIGAV---ELFNHMPTGRTYHQYINPERPMPNEAFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V    F+     F        +  +N  FD  +      R            
Sbjct: 61  DEFLRDKPV----FAAIGRAFLDFVGEARLVIHNAAFDMKFLNFELGRAGLPRLA----- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
            +   D L + R  +  +P                L  L    G+++     H A  D  
Sbjct: 112 PDQALDTLALARQRFPGAPAT--------------LDALCRRFGVDNSAREKHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 158 ILAEVYLELIGGRQPDF 174


>gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT]
 gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336]
 gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336]
          Length = 252

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +I D ET G +            +   V +             + KP  D L DPEA+ +
Sbjct: 11  IILDTETTGMNEFGAHYEGHCIIEIGAVEM-INRRYTGRKLHLYIKP--DRLVDPEAIKV 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         +  ++    F       I   +N  FD  +    F ++ ++    
Sbjct: 68  HGITDEMLADKP-DFSAIAQEFIDFIKGAELII---HNAPFDIGFMDYEFKKHNFNINT- 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              +     D L + R +Y                    L  L     I++     H A 
Sbjct: 123 --ADICLITDTLQMARQMYPG--------------KRNSLDALCDRLNIDNSKRTLHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLF 199
            D      +   +   +  LF
Sbjct: 167 LDAEILGDVYLAMTGGQTSLF 187


>gi|189423312|ref|YP_001950489.1| exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ]
 gi|189419571|gb|ACD93969.1| Exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ]
          Length = 302

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 39/189 (20%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV------RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +  D ET G + A D+  +   V            + I     F            E   
Sbjct: 45  LCLDTETTGLNPACDKIIELGIVAFQYDPLTSGIIKIIGRYAGFE---DPGIPLSAETTA 101

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           ITGIT +     G    +   ++ +     +  ++  +N  FD  +              
Sbjct: 102 ITGITDEMV--SGQSFDDA--QVCRLADQAS--LVIAHNAAFDRKFVEA----------- 144

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                   R+ +   +           Q   + +  ++  L+ L    G   +NAH A  
Sbjct: 145 --------RFPVFSKVPWG----CSMTQVDWQAERISTRVLEYLLFKFGW-FINAHRALD 191

Query: 180 DVYATLALV 188
           D    L ++
Sbjct: 192 DAEGLLGIL 200


>gi|255321503|ref|ZP_05362661.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           showae RM3277]
 gi|255301359|gb|EET80618.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
           showae RM3277]
          Length = 311

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 31/186 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G  +   +  +   +++ +  E I   E F   P   Y+P+     +TGIT
Sbjct: 73  FCVVDIETSGG-INSGQIIEIGALKL-QNGEIIGKFETFVYAP---YVPE-NISELTGIT 126

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A    +   F       +   +N+RFD  +         Y         
Sbjct: 127 AEHLKNAP-SLAFVMEQFKVFL---GQSVFVAHNVRFDYGFISATLEALGYGELLN---- 178

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +   +D+ R   A              +  + L  L    GI++ + H A +D  A 
Sbjct: 179 --RKLCTIDLARRTIA--------------SPKYGLGTLKEILGIDNTH-HRALSDAIAA 221

Query: 185 LALVWL 190
             +   
Sbjct: 222 AEIFKY 227


>gi|88856168|ref|ZP_01130828.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
 gi|88814487|gb|EAR24349.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
          Length = 232

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 53/185 (28%), Gaps = 25/185 (13%)

Query: 1   MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+N      +D ET G DV   R        VD     I   +               A 
Sbjct: 1   MSNSGTLATFDLETTGVDVETSRIVSACIALVDASGVVISRWDWLA---DPGVEIPEGAA 57

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            I GI+ ++A  +G   A     I Q           ++ YN   +D         R   
Sbjct: 58  AIHGISTERARAEGRDAAIVVAEIVQTLKVTCALGIPLVVYNAP-YDLSLLDRECRRYSI 116

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
           D  R  +   +       V R                       L+  +   G+   +AH
Sbjct: 117 DGLREPYIVIDPLVIDKAVDRYRRGKRT----------------LEVTSGLYGVALDDAH 160

Query: 176 DAKAD 180
           DA +D
Sbjct: 161 DAGSD 165


>gi|261380159|ref|ZP_05984732.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
 gi|284796997|gb|EFC52344.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
          Length = 245

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   +I D ET G      DR  +FAG+ +    +  +S    +  P  D     EA  
Sbjct: 1   MSQRQIILDTETTGLYPENGDRLVEFAGLEM-INRQMTDSNLHLYVHPERDM--PEEAAK 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          A+  ++I  F       I   +N +FD  +    F R    S 
Sbjct: 58  VHGLTIEVLEAKNAPPFAQVGKQIADFIRGAELII---HNAKFDVGFLNMEFRRMGLPSI 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G    D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCKVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRQQ 176


>gi|268319456|ref|YP_003293112.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785]
 gi|262397831|emb|CAX66845.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785]
          Length = 938

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 28/202 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      D   QF    + ++ + +++                    +T I
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +   +       ++ +I +        I   +N+ FD  +          +       
Sbjct: 66  SNEDVAKAHDFSY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ + ++                 S+KL+DL     I+H+N H A +D   
Sbjct: 117 -TGKAVDTVELAQIVFPTF-------------PSYKLRDLTARLRIKHLNPHRADSDALV 162

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
           T  L+    +K   L +   + 
Sbjct: 163 TAKLLLKAIKKLENLPQATLNT 184


>gi|289209028|ref|YP_003461094.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
           K90mix]
 gi|288944659|gb|ADC72358.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
           K90mix]
          Length = 246

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 21/178 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D ET G D   D       V +D    +I+ +         D     ++  I  IT
Sbjct: 56  FLAVDLETTGLDPEHDAILSIGWVAMD--GVRIDLSTADQRLVRADCPVPEQSAVIHRIT 113

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++A   G         + +        ++  ++   +  +     YR +          
Sbjct: 114 DREAAG-GTTVDSALDALFEVLQ---GRVLVAHHAALELGFLEEACYRLY---------G 160

Query: 125 GNSRWDLLDVMR-AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 ++D +R A       G   P+        +L  L     +    AHDA  D 
Sbjct: 161 VRPPLPVVDTLRLAERQLRRAGRPIPADG-----MRLHTLRGRYNLPQYRAHDALFDA 213


>gi|134045738|ref|YP_001097224.1| exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
 gi|132663363|gb|ABO35009.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
          Length = 191

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 55/195 (28%), Gaps = 12/195 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G      + AQ + +  D      +    ++    D       A  + G+T
Sbjct: 2   YVFLDTETTGLHP--GQIAQLSYLVTDEDLNLKKVFNQYY--LVDHM--SRSAAKVHGLT 55

Query: 65  PQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
                 L +G+   +    +          +I  +NI FD  + +  F R   +      
Sbjct: 56  MDILDELSNGMTFEDTVDEVRDDLEDS---VIIGHNISFDIRFLKAEFERLGPEYIPKDK 112

Query: 123 DNGNSRWDLLDVMR-AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 +  +  +        P  ++     +      L+      G   V  HDA+ D 
Sbjct: 113 FCTMFHFTPICKLPGQKRYKRPKLVELMEFLEQCPHEGLEFTKKTYGCSDVGFHDARYDT 172

Query: 182 YATLALVWLIREKKP 196
                          
Sbjct: 173 GILYLCYKKGVLLDH 187


>gi|237755791|ref|ZP_04584393.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692054|gb|EEP61060.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 203

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 20/192 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V +D ET G +  +D     A V++      +        +P  + +   +A+ I G
Sbjct: 32  NEYVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVRPDREII--EDAIKIHG 89

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +  +     G+   E   R   F    +  ++GY         ++     +         
Sbjct: 90  LRKKDL-ESGIPIEEAVDRFAHFI--GSRPLVGYYLEFDVAMVNKYFKKLSG-------- 138

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L   +   +      +      G    +   +     I     HDA  D  
Sbjct: 139 -------TTLPNKQIEVSALYYDFKIGLIPQGFVDLRFDSILKDLDIPTFGKHDALNDAI 191

Query: 183 ATLALVWLIREK 194
            T  +   ++ K
Sbjct: 192 MTALIFLKLKNK 203


>gi|169840886|ref|ZP_02873999.1| exonuclease I [candidate division TM7 single-cell isolate TM7a]
          Length = 60

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 24 QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82
          QFAG+R D  +  I           DD LP P A+ +TGITPQK + DG  E++F++ +
Sbjct: 2  QFAGIRTDADFNIIGEPYNLLVALNDDTLPSPSALMVTGITPQKTVSDGYTESQFAKYL 60


>gi|312884148|ref|ZP_07743860.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368196|gb|EFP95736.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 239

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 52/193 (26%), Gaps = 12/193 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D+ET G D   D       V        I   + +  KP        E+V I GIT
Sbjct: 49  FLAMDFETTGLDSNDDDIITIGTVPFTIDRIMINKAKHWTVKPRKQL--PEESVVIHGIT 106

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               L       + S    +        ++  +  R +  +          +        
Sbjct: 107 HSDILDAP----DLSGVYREVLEQMAGKVMVVHYQRIEREFFDKALKTRINEGIE----- 157

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + +          G+    +     S +L       G+     H A  D  AT
Sbjct: 158 -FPVIDTMQLETIAQQKMTSGLINRLKRRQPESVRLGASRSRYGLPLYPPHHALTDAVAT 216

Query: 185 LALVWLIREKKPK 197
             L+        K
Sbjct: 217 AELLQAQIAHHYK 229


>gi|254458194|ref|ZP_05071620.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207085030|gb|EDZ62316.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 272

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 12/173 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F I D ET G  +   +  +   V+V R    I+  E   +C+       +     ITGI
Sbjct: 69  FCIVDIETNGSKIDKHQIIEIGAVKV-RDGVIIDKFESLVYCR-----EINKHITEITGI 122

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +             + +++F S     I   ++++FD  +      +   +       
Sbjct: 123 SVEDTKNAPN----LKKVLYEFKSFLGNAIFVAHDVKFDYKFISLSMQKIGLEPLLN-RS 177

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
             +       +    YA S          +      + D+    G+  ++ H+
Sbjct: 178 ICSLALAERTIESYRYALSYLNDSLHLNPNATHHRAMSDVITTYGLFMLSLHN 230


>gi|197261475|ref|YP_002154290.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LMA2]
 gi|197244565|emb|CAR31299.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LMA2]
          Length = 184

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 31/197 (15%)

Query: 5   FVIYDYETFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           F ++D ET G             R  +FAGV  D + + ++  E F C      + +   
Sbjct: 3   FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGE-KILDEVE-FIC--NPGIVIEEII 58

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             ITG+  +  ++      +  +++  FFS  +  I   +N+ FD +       R  +  
Sbjct: 59  TKITGLKNEDLIKHP-SFLDQRQKVRDFFSRADANI--AHNLPFDKFMLTCDLARGKFGL 115

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
              ++ + +     +  +          +            +LQ L       +V  H A
Sbjct: 116 DEVNFPSLD-----ICTVEESAPLFGHRM------------RLQHLYEHYCGPYVQKHRA 158

Query: 178 KADVYATLALVWLIREK 194
             DV     +   +   
Sbjct: 159 LDDVRLLHEVCKRMGVY 175


>gi|237738098|ref|ZP_04568579.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419978|gb|EEO35025.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
          Length = 474

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 76/243 (31%), Gaps = 33/243 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            +++I   ET G +  +D   +   +R+      +++ + F       +    EA  I G
Sbjct: 5   ENYIIVSLETTGLNHLVDEILKIEAIRI-ENGNIVDTFKEF---IKPKFEIPKEASRING 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       +E +   +   F       ++ YN            F   F       +
Sbjct: 61  ITFEDVKNSPSIE-DVLDKFKNF-RKKGDILVAYN----------AEFVSKFIGFNFKRY 108

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N     + +D++  +     +            S+ L+ +A    I+         +  
Sbjct: 109 KNSIFSHEFIDLLSLVRYIYKNI----------PSYNLKYVATYLKIDS-------TNKD 151

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
            T+    +++  K K+ +      N ++       +     ++    +        L+  
Sbjct: 152 KTIICYEILKNLKNKIGDNQEKIFNGSECIIKYLDEKKLKKLNKDSGYKKEVKKKWLLII 211

Query: 243 VAW 245
           + +
Sbjct: 212 LTF 214


>gi|227890026|ref|ZP_04007831.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849470|gb|EEJ59556.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC
           33200]
          Length = 938

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 28/202 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      D   QF    + ++ + +++                    +T I
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +   +       ++ +I +        I   +N+ FD  +          +       
Sbjct: 66  SNEDVAKAHDFSY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ + ++                 S+KL+DL     I+H+N H A +D   
Sbjct: 117 -TGKAVDTVELAQIVFPTF-------------PSYKLRDLTARLRIKHLNPHRADSDALV 162

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
           T  L+    +K   L +   + 
Sbjct: 163 TAKLLLKAIKKLENLPQATLNT 184


>gi|157375459|ref|YP_001474059.1| DNA polymerase III subunit epsilon [Shewanella sediminis HAW-EB3]
 gi|157317833|gb|ABV36931.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
           HAW-EB3]
          Length = 238

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 12/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G D   +       V      ++I   +        +     +++ I GIT
Sbjct: 48  FVALDFETTGLDANQNSIISIGLVPF--TLQRIACRQAKHWFVTPEDKLQEDSIIIHGIT 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +  R + Q        I+  +  R +  +          +        
Sbjct: 106 HSDLKGAP----DLLRILEQLLDELAGKIVVVHYRRIERDFFDAALRSLIKEGIV----- 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + +   I    P       ++    S +L +      +     HDA  D  AT
Sbjct: 157 -FPVVDTMQIEADIQQARPRSFIDWLKNTRPESIRLANSRTRYNLPTYPPHDALTDAIAT 215

Query: 185 LALVWLIREKK 195
             L+       
Sbjct: 216 AELLQAQIHHH 226


>gi|146278706|ref|YP_001168865.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556947|gb|ABP71560.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 237

 Score = 73.7 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 55/197 (27%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +   R  +   V     +  + +   +      +     EA  + G+ 
Sbjct: 12  IVLDTETTGFEPSEGHRIVEIGAV---ELFNHMPTGRTYHQYINPERPMPNEAFEVHGLG 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V  +E      +F        +  +N  FD  +      R       +    
Sbjct: 69  DEFLRDKPV-FSEIGSAFLEFV---GEARLVIHNAAFDMKFLNFELGRVGLPRLPFE--- 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                D L + R  +  +P                L  L    G+++     H A  D  
Sbjct: 122 --RALDTLALARKRFPGAPAT--------------LDALCRRFGVDNSAREKHGALLDSE 165

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 166 ILAEVYLELIGGRQPDF 182


>gi|290580273|ref|YP_003484665.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
 gi|254997172|dbj|BAH87773.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025]
          Length = 842

 Score = 73.7 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 29/203 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  + + D E  G   +     Q   V +    + I   + +              + +T
Sbjct: 28  TRKYAVVDLEATGASHSAS-IIQVGIVII-ENEQII---QTYTTDVNPHKPLSKAIIRLT 82

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +  +     +E +  I+        C+   +N++FD        +   ++     
Sbjct: 83  GITDAQLQQAP-DFSEVAADIYHLIDD---CVFVAHNVKFDANLLAEHLFLEGFELLT-- 136

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  Y                  + L +L     I+  +AH A AD 
Sbjct: 137 -----PRVDTVELAQVFYPTFE-------------KYSLGNLTELLKIDLSDAHTAIADA 178

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
            AT  L   +++K   L +   +
Sbjct: 179 KATAELFLKLKQKMTDLPKLTLE 201


>gi|116074604|ref|ZP_01471865.1| Exonuclease [Synechococcus sp. RS9916]
 gi|116067826|gb|EAU73579.1| Exonuclease [Synechococcus sp. RS9916]
          Length = 317

 Score = 73.7 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 54/199 (27%), Gaps = 29/199 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +I D ET G D   +   +   +  D    ++ + + F      +      A  I 
Sbjct: 86  PRTLLILDTETTGLDPETEHCLEVGAILFDVPSRQVLAQQSFLLPVQAN-----AAEPIN 140

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I P    R                      ++  +N  FD  +                
Sbjct: 141 RI-PAAVTRLAQPWEAALAYFQSLLDAAE--VLVAHNAAFDRQWFGRGC----------- 186

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L      +  S D ++WP          ++DLALA  +    AH A  D 
Sbjct: 187 ----------LPSTAKPWLCSMDDMRWPKNRQLRARPSVRDLALAYEVPVWAAHRALTDC 236

Query: 182 YATLALVWLIREKKPKLFE 200
                +     + + +L  
Sbjct: 237 IYIAEVFRRCEDLEQRLVH 255


>gi|24379729|ref|NP_721684.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus mutans UA159]
 gi|24377689|gb|AAN58990.1|AE014965_11 putative ATP-dependent DNA helicase; DNA polymerase III, epsilon
           subunit (3'-5' exonuclease) [Streptococcus mutans UA159]
          Length = 820

 Score = 73.7 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 29/203 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  + + D E  G   +     Q   V +    + I   + +              + +T
Sbjct: 6   TRKYAVVDLEATGASHSAS-IIQVGIVII-ENEQII---QTYTTDVNPHKPLSKAIIRLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +  +     +E +  I+        C+   +N++FD        +   ++     
Sbjct: 61  GITDAQLQQAP-DFSEVAADIYHLIDD---CVFVAHNVKFDANLLAEHLFLEGFELLT-- 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R D +++ +  Y                  + L +L     I+  +AH A AD 
Sbjct: 115 -----PRVDTVELAQVFYPTFE-------------KYSLGNLTELLKIDLSDAHTAIADA 156

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
            AT  L   +++K   L +   +
Sbjct: 157 KATAELFLKLKQKMTDLPKLTLE 179


>gi|312875182|ref|ZP_07735195.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2053A-b]
 gi|311089289|gb|EFQ47720.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2053A-b]
          Length = 299

 Score = 73.7 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 29/180 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  +VI D ET G D   +   +   +++ +    IE      C    +         +T
Sbjct: 128 TKPYVIIDLETTGLDYINNNIIEIGAIKIAKN---IEEYS---CIVKQNITLPNAIKILT 181

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+  +    G  E+   + +  F    +  ++GYN   FD  +      RN        
Sbjct: 182 GISDAELKN-GKDESVAIKELCTFI--GDKALVGYNV-NFDIRFINEALKRNGQ------ 231

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N  +D++  ++    F               ++KL  +    GI     H A  DV
Sbjct: 232 SQLTNKVYDVMKYVKRDKMFL-------------KNYKLDTVLSEYGINIKVPHRAIEDV 278


>gi|332534582|ref|ZP_08410417.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036002|gb|EGI72481.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 236

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 53/193 (27%), Gaps = 13/193 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +   D       V      E+I                  E++ I GIT
Sbjct: 47  FVAMDFETTGLNSQNDDIVSVGLVPF--NLERIYCKHSRHWVVQPRRNLHEESILIHGIT 104

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +         + ++ I       +  ++  +    + ++  N       +   ++  +
Sbjct: 105 HSEVDDAP----DLNQIIEPLLEALSGKVVVVHYAAIERHFLNNALLLRLKEGIEFALVD 160

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                      R          +         S +L D      +     H+A  D  AT
Sbjct: 161 TMEIEKRALKARQGLLGRLFNTKL-------GSLRLTDCRARYSLPAYQNHNALTDALAT 213

Query: 185 LALVWLIREKKPK 197
             L+        +
Sbjct: 214 AELLQAQLSYHYR 226


>gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str.
           Wilmington]
 gi|81826284|sp|Q68W16|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon
 gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 229

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 26/200 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  +   +       K+ + + F C    +     EA  I GI+
Sbjct: 7   IILDTETTGLDPQQGHRIIEIGAI---EMVNKVLTGKHFHCYINPERDMPFEAYKIHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +     +    +F +     I   +N  FD  +  +    +        +  
Sbjct: 64  GEFLKDKPLFHT-IANDFLKFIADSTLII---HNAPFDIKFLNHEL--SLLKRTEIKFLE 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
             +  D L + R+++  +               + L  L     +++     H A  D  
Sbjct: 118 LTNTIDTLVMARSMFPGA--------------RYSLDALCKRFKVDNSGRQLHGALKDAA 163

Query: 183 ATLALVWLIREKKPKLFEYL 202
               +   +   +   F+ +
Sbjct: 164 LLAEVYVALTGGRQSTFKMI 183


>gi|33151469|ref|NP_872822.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP]
 gi|33147689|gb|AAP95211.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP]
          Length = 256

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 51/197 (25%), Gaps = 30/197 (15%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G +            +   V +            F          + EA+ +
Sbjct: 10  VVLDTETTGMNFNGPPQIGHNIIEIGAVEL-INRRLTGR--TFHVYIKPPREVEEEAIKV 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT           AE +     F       I   +N  FD  +    F        + 
Sbjct: 67  HGITNAFLQDKP-TFAEIAHEFLAFIQGAELII---HNAPFDVAFIDQEFSSLVNPPSKT 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                 +  D L + R +Y                    L  L    GI++     H A 
Sbjct: 123 --AEMCTVTDTLQMARKMYPG--------------KRNNLDALCDRLGIDNSKRVLHGAL 166

Query: 179 ADVYATLALVWLIREKK 195
            D      +  ++   +
Sbjct: 167 LDAEILADVFLMMTGGQ 183


>gi|317492115|ref|ZP_07950545.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919820|gb|EFV41149.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 218

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 63/205 (30%), Gaps = 26/205 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV---RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A V     D  W + + T  F  +P    +  PEA+   G
Sbjct: 20  VVIDVETAGFDANTNALLEIAAVTLRMTDDGWLEPDETLHFHVEPFVGSVLVPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P+  LR  V E E    I +           N  +I  +N  FD  +      R    
Sbjct: 80  IDPENPLRGAVSEYEALHAIFKAVRKGIKEHDCNRAVIVAHNAHFDHSFVMAAAERVGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +A     +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAANIPFDSTQAHS 182

Query: 177 AKADVYATLALVWLIREKKPKLFEY 201
           A  D   T  L   +  +  ++  +
Sbjct: 183 ALYDTEQTATLFCELVNRWKRMGGW 207


>gi|284032480|ref|YP_003382411.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
 gi|283811773|gb|ADB33612.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
          Length = 415

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 55/198 (27%), Gaps = 28/198 (14%)

Query: 5   FVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G       R  + A V +D+              P  D  P      I GI
Sbjct: 2   YAVIDTETTGLLPGHRHRVIEIAVVLLDQHGRFEHEWVTLL-NPQRDLGPQ----HIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                L       + +R +    +     ++  +N+ FD  + R  F R           
Sbjct: 57  LTADVLAAPE-FVDVARHLGALLA---GRMVVGHNVEFDLGFLRAEFARLG--------- 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                     V+  I   S   +         +   L     A GI     H A AD  A
Sbjct: 104 ---------HVVPLITERSMCTMALAGYLYPGSKRTLGACCAAAGISLQGWHSALADTRA 154

Query: 184 TLALVWLIREKKPKLFEY 201
           T  L        P    +
Sbjct: 155 TAELFATYLRSFPSPPPW 172


>gi|83649371|ref|YP_437806.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83637414|gb|ABC33381.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 189

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 58/182 (31%), Gaps = 24/182 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G D       + +   +D + + +    V    P  D     EA  I GIT 
Sbjct: 19  VVLDTETTGLD-DQAEVIEVS--VMDMRGKVLFDQLVRPLNPVPD-----EAADIHGITS 70

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          +    + +  S     ++ YN   FD                   W   
Sbjct: 71  ESLADKP-NFPDVYHSLKRVIS--GKTVVAYNA-DFDSRLLMQTCAAYGLPVIEADWQ-- 124

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                      A+ A++    +  ++  G     L   A   GIE   AH A AD + T+
Sbjct: 125 ----------CAMNAYTRYRKEPDAKRGGYRRQSLAKAAAQMGIEVHGAHRALADCFTTV 174

Query: 186 AL 187
            +
Sbjct: 175 EV 176


>gi|54310042|ref|YP_131062.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914481|emb|CAG21260.1| Putative DNA polymerase III, epsilon subunit [Photobacterium
           profundum SS9]
          Length = 246

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 58/202 (28%), Gaps = 30/202 (14%)

Query: 3   NHFVIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
              ++ D ET G +            +   V +    +       F      D   + EA
Sbjct: 10  QRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEI-INRKLTG--NSFHVYIKPDRTIEVEA 66

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + + GIT +  +   V   E      +F        +  +N  FD  +     +R    +
Sbjct: 67  IGVHGITDEFLIGKPV-YKEVHDEFLEFIKGAE---LVAHNAPFDVGFMDYE-FRKLNPN 121

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAH 175
              + ++     D L + + I+                    L  L    GI+  H   H
Sbjct: 122 IGKT-EDFCKVTDTLAMAKKIFPG--------------KRNNLDILCSRYGIDNSHRTLH 166

Query: 176 DAKADVYATLALVWLIREKKPK 197
            A  D      +  L+   +  
Sbjct: 167 GALLDAEILADVYLLMTGGQTS 188


>gi|290963218|ref|YP_003494400.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260652744|emb|CBG75877.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 215

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 21/196 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G D+  D       V V     +I+  + F+            ++ + G+ 
Sbjct: 23  YCVIDLETTGLDLRRDEIISVGAVPVREG--RIDLGDSFYSLVRPRCAVSVASIKVHGLR 80

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P          A   + +    S     ++  +    +  +                W  
Sbjct: 81  PGDLDSAPDP-ATVGQALSPRLS---GRVVVAHAAWIERAFLSRTQSTVG-------WSQ 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             +  D   + RA            +  D      L+ LA   G+     H A  D   T
Sbjct: 130 VRAVVDTAALARATGC--------WAGHDSGREPPLELLARRLGLPVCTPHHALGDALTT 181

Query: 185 LALVWLIREKKPKLFE 200
             +   +  +  +   
Sbjct: 182 ATVFLALAARAERTRH 197


>gi|288554471|ref|YP_003426406.1| hypothetical protein BpOF4_07280 [Bacillus pseudofirmus OF4]
 gi|288545631|gb|ADC49514.1| hypothetical protein BpOF4_07280 [Bacillus pseudofirmus OF4]
          Length = 245

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 55/202 (27%), Gaps = 26/202 (12%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F+++D ET G      D       V++  +  ++   E F+        P  + + +TG
Sbjct: 58  SFIVFDLETSGFFPDKGDEILSIGAVKM--KGAEVLFEESFYSTVQCKKEPSSDVLSLTG 115

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T ++         E     ++F       ++ ++      + S   +            
Sbjct: 116 LTLEELQSS-RPLIEVLNDFYEFV--GGGTLVAHHATHEKRFMSHMTWQLMRMPFA---- 168

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              +   D   + R +                     L +  +   I     H A  D  
Sbjct: 169 ---HRIIDTTFLTRVVAH-------------DENLVTLDECCIYYNIPITTRHHALYDAK 212

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
            T  L     +   +       
Sbjct: 213 MTAELWGQSLKLAQEKGFSTLR 234


>gi|255065954|ref|ZP_05317809.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
 gi|255049865|gb|EET45329.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
          Length = 255

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   +I D ET G      DR  +FAG+ +    +   +    +  P  D     EA  
Sbjct: 16  MSKRQIILDTETTGLYAEGGDRLVEFAGLEM-INRQITGNNLHLYVHPERDM--PEEAAK 72

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          AE  R+I  F       I   +N +FD  +    F R    S 
Sbjct: 73  VHGLTIEVLEEKNAPPFAEVGRQIADFIRDAELII---HNAKFDVGFLNMEFRRMGLPSI 129

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 130 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRLSVDRSKRVLHG 172

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 173 ALIDCELLGEVYLAMTRQQ 191


>gi|206580062|ref|YP_002238188.1| ribonuclease T [Klebsiella pneumoniae 342]
 gi|288935177|ref|YP_003439236.1| ribonuclease T [Klebsiella variicola At-22]
 gi|290509235|ref|ZP_06548606.1| ribonuclease T [Klebsiella sp. 1_1_55]
 gi|206569120|gb|ACI10896.1| ribonuclease T [Klebsiella pneumoniae 342]
 gi|288889886|gb|ADC58204.1| ribonuclease T [Klebsiella variicola At-22]
 gi|289778629|gb|EFD86626.1| ribonuclease T [Klebsiella sp. 1_1_55]
          Length = 215

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 62/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + + T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E +    I +        S  +  I+  +N  FD  ++     R    
Sbjct: 80  INPHDPERGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      +A     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACIAAGMAFDGAQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTEQTAQLFCEIVNR 200


>gi|59801359|ref|YP_208071.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA 1090]
 gi|240080918|ref|ZP_04725461.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA19]
 gi|268597034|ref|ZP_06131201.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|59718254|gb|AAW89659.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA 1090]
 gi|268550822|gb|EEZ45841.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 244

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MMTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T Q          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRVGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|84684641|ref|ZP_01012542.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Maritimibacter alkaliphilus HTCC2654]
 gi|84667620|gb|EAQ14089.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Rhodobacterales bacterium HTCC2654]
          Length = 230

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 53/196 (27%), Gaps = 29/196 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +         T   +  P  D      A  + G++
Sbjct: 4   IVLDTETTGFDPKTGDRMVEIGAVEL-FNHMPTGRTYHQYINPQRDM--PEGAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V  A+ +    +F        +  +N  FD  +                   
Sbjct: 61  EEFLKDYPV-FADIADAFLEFIGDAK---LVIHNASFDVPFLNAELGWCKRRQIPMDQS- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D L + R  +  + +               L  L    GI+  H   H A  D  
Sbjct: 116 ----IDTLLIARKKFPGAGN--------------SLDALCRRFGIDNSHRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKL 198
               +   +   +   
Sbjct: 158 ILAEVYLELIGGRQPD 173


>gi|58579186|ref|YP_197398.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417812|emb|CAI27016.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 242

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 19/139 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           +  D ET G D    DR  +   +      E I+       F      +      A  I 
Sbjct: 10  IALDTETTGLDADGGDRIIEMGCI------ELIDRVFTGKVFHEYINPERDIPYYATKIH 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT           +E + +   F       ++  +N  FD  + +        D  + S
Sbjct: 64  GITVDMLKDKPK-FSEIADKFLDFI---GNSVLVIHNAVFDIKFIKME-----LDKIQKS 114

Query: 122 WDNGNSRWDLLDVMRAIYA 140
           +++     D L + R  + 
Sbjct: 115 YNSDFQVVDTLILARKKFP 133


>gi|319936397|ref|ZP_08010813.1| DNA polymerase III [Coprobacillus sp. 29_1]
 gi|319808512|gb|EFW05064.1| DNA polymerase III [Coprobacillus sp. 29_1]
          Length = 187

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 32/190 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + + + D ET G   A D+  +   +++ R  + I+           +    P    +TG
Sbjct: 20  DDYCVIDLETTGLSWADDKIIEVGILKI-RNQQIIDKYSQL---INPEREVSPFITKLTG 75

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT    L       E    +  F       I+  +N  FD  +  N F+ +  + Y    
Sbjct: 76  ITNDMLLGMP-TLDEIRDDVFSFI---GDDILLGHNTSFDLNFVANQFHIDIENEY---- 127

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    +D ++      P               +L D+     + + N H + AD  
Sbjct: 128 ---------MDTLQFCRKVYPHMKH----------HRLTDMVQYLNLSN-NEHRSIADCI 167

Query: 183 ATLALVWLIR 192
           AT  L   I+
Sbjct: 168 ATYELYEKIK 177


>gi|313672047|ref|YP_004050158.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312938803|gb|ADR17995.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 201

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 52/192 (27%), Gaps = 25/192 (13%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV++D ET G +    D+  +    +++  ++ +     F      D     E   I G
Sbjct: 16  SFVVFDLETTGLNPDNGDQIIEMGAFKIEEGFKLVRDP--FHTMVKPDIFIPNE---IHG 70

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  +         +    ++ F       ++  +    D  + R        D      
Sbjct: 71  ITEMELKNAP----DICTALYDFIDFSRGSVLVAHKASKDIAFLRAAMREYLIDD----- 121

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D +   + +Y            +    S                 H A  D  
Sbjct: 122 SFDFLVIDTIKFSQRLYPDFKYHNLDYLIEKHHISI----------NSKFKRHRAIYDAE 171

Query: 183 ATLALVWLIREK 194
           AT  +   +  K
Sbjct: 172 ATAKIFLKMIRK 183


>gi|170782319|ref|YP_001710652.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156888|emb|CAQ02056.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus]
          Length = 233

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 9/123 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +    +D ET G DV   R      V +D Q E +E  +               A  I G
Sbjct: 7   DTLASFDLETTGVDVETARIVTACIVVLDAQGEVVERHDWLA---DPGVEIPAGAAAIHG 63

Query: 63  ITPQKA----LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           +T ++A       G V  E    I + F+     ++ YN   +D         R+  +  
Sbjct: 64  VTTERARAEGRDAGAVVLEIVTTIREMFAR-GLALVVYNAP-YDLTLLNREAVRHGVEPL 121

Query: 119 RWS 121
           R +
Sbjct: 122 RDT 124


>gi|85707524|ref|ZP_01038599.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius sp. 217]
 gi|85667957|gb|EAQ22843.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius sp. 217]
          Length = 231

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 49/197 (24%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V +            F             A  + G+ 
Sbjct: 4   IVLDTETTGFEPESGDRIVEIGAVEL-YNHMPTGR--TFHKYINPQRAMPEAAFAVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +  AE ++    F        +  +N  FD  +              W    
Sbjct: 61  DDFLRNKPL-FAEIAQEFLDFVLDAK---LVIHNAAFDMKFLNAELGWLKLPHLPWEQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  SP                L  L     I++     H A  D  
Sbjct: 116 ----IDTLAIARQKFPGSPA--------------SLDALCRRFQIDNSARTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 158 ILAEVYLELIGGRQPDF 174


>gi|238753629|ref|ZP_04614991.1| Ribonuclease T [Yersinia ruckeri ATCC 29473]
 gi|238708181|gb|EEQ00537.1| Ribonuclease T [Yersinia ruckeri ATCC 29473]
          Length = 217

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 59/200 (29%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D       + T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDENGWLQRDETLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFVMEAAERACLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    L  GI      A
Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 181 HSALYDTEQTAELFCELVNR 200


>gi|194098390|ref|YP_002001448.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998794|ref|ZP_04718718.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           35/02]
 gi|240112723|ref|ZP_04727213.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           MS11]
 gi|240115471|ref|ZP_04729533.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID18]
 gi|240123321|ref|ZP_04736277.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID332]
 gi|240128023|ref|ZP_04740684.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493581|ref|ZP_05106752.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
 gi|260440719|ref|ZP_05794535.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           DGI2]
 gi|268594640|ref|ZP_06128807.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268598788|ref|ZP_06132955.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
 gi|268601147|ref|ZP_06135314.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
 gi|268681945|ref|ZP_06148807.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
 gi|268686413|ref|ZP_06153275.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
 gi|291044028|ref|ZP_06569744.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
 gi|293399220|ref|ZP_06643385.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
 gi|193933680|gb|ACF29504.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512621|gb|EEH61966.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
 gi|268548029|gb|EEZ43447.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268582919|gb|EEZ47595.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
 gi|268585278|gb|EEZ49954.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
 gi|268622229|gb|EEZ54629.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
 gi|268626697|gb|EEZ59097.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
 gi|291012491|gb|EFE04480.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
 gi|291610634|gb|EFF39744.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
 gi|317164085|gb|ADV07626.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 244

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MMTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T Q          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|319638369|ref|ZP_07993131.1| DNA polymerase subunit III [Neisseria mucosa C102]
 gi|317400118|gb|EFV80777.1| DNA polymerase subunit III [Neisseria mucosa C102]
          Length = 245

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   +I D ET G      DR  +FAG+ +    +  +S    +  P  D     EA  
Sbjct: 1   MSQRQIILDTETTGLYPENGDRLVEFAGLEM-INRQMTDSNLHLYVHPERDM--PEEAAK 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          A+  ++I  F       I   +N +FD  +    F R    S 
Sbjct: 58  VHGLTIEVLEAKNAPPFAQVGKQIADFIRGAELII---HNAKFDVGFLNMEFRRMGLPSI 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G    D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCKVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRQQ 176


>gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195]
 gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195]
          Length = 307

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 30/196 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  +V  D ET   +           V+  +    ++S          +   D   +FI
Sbjct: 1   MSYSYVALDVET--ANDFRGSVCSIGLVKF-KDGNIVDSFYTL---INPEEEFDDFNIFI 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GITP+  L       E  + I  F     + I+  +  +FD                  
Sbjct: 55  HGITPEDVLDSP-TFPEVRKAIVDFI---GSDIVVAHFAQFDMGA---------LKDVYQ 101

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            ++      + +   R                 G  ++KL+ LA    IE  + H+A +D
Sbjct: 102 KYELDFDNIEYICSYRLAKV----------ALPGQLNYKLKRLAKNLNIELDH-HNALSD 150

Query: 181 VYATLALVWLIREKKP 196
             A+  ++  +     
Sbjct: 151 ARASGLILEYLLSTNS 166


>gi|116070417|ref|ZP_01467686.1| Exonuclease [Synechococcus sp. BL107]
 gi|116065822|gb|EAU71579.1| Exonuclease [Synechococcus sp. BL107]
          Length = 285

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 33/194 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP--EAVF 59
               +I D ET G +       +   +  D Q   + + + F        LP     A  
Sbjct: 53  PRTLLIIDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFL-------LPAETNAAEP 105

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I  I P    R      E            +  ++  +N  FD  +              
Sbjct: 106 INRI-PAAVTRLSQPWKEALLWFQNLLDAAD--VLVAHNAAFDRQWFGRGE--------- 153

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                       L  +   +  S + ++WP+     +   ++DLALA G+    AH A  
Sbjct: 154 ------------LPAVTQPWLCSMEDMRWPADRQLRSRPSVRDLALAYGVPVWAAHRALT 201

Query: 180 DVYATLALVWLIRE 193
           D      +     +
Sbjct: 202 DCIYLAEVFARCDD 215


>gi|329667338|gb|AEB93286.1| ATP dependent helicase [Lactobacillus johnsonii DPC 6026]
          Length = 938

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 28/202 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      D   QF    + ++ + +++                    +T I
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +   +       ++ +I +        I   +N+ FD  +          +       
Sbjct: 66  SNEDVAQAHDFSY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KL+DL     I+H+N H A +D   
Sbjct: 117 -TGKAVDTVELAQIAFPTF-------------PSYKLRDLTARLRIKHLNPHRADSDALV 162

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
           T  L+    +K   L +   + 
Sbjct: 163 TAKLLLKAIKKLENLPQATLNT 184


>gi|42519127|ref|NP_965057.1| hypothetical protein LJ1202 [Lactobacillus johnsonii NCC 533]
 gi|41583414|gb|AAS09023.1| hypothetical protein LJ_1202 [Lactobacillus johnsonii NCC 533]
          Length = 938

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 28/202 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      D   QF    + ++ + +++                    +T I
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +   +       ++ +I +        I   +N+ FD  +          +       
Sbjct: 66  SNEDVAQAHDFSY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KL+DL     I+H+N H A +D   
Sbjct: 117 -TGKAVDTVELAQIAFPTF-------------PSYKLRDLTARLRIKHLNPHRADSDALV 162

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
           T  L+    +K   L +   + 
Sbjct: 163 TAKLLLKAIKKLENLPQATLNT 184


>gi|292488168|ref|YP_003531050.1| ribonuclease T [Erwinia amylovora CFBP1430]
 gi|291553597|emb|CBA20642.1| ribonuclease T [Erwinia amylovora CFBP1430]
          Length = 226

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 59/200 (29%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A V  ++D     + + T  F  +P    +   EA+   G
Sbjct: 22  VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLAEALAFNG 81

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  ++  +N  FD  +      R    
Sbjct: 82  IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 141

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L     A G+      A
Sbjct: 142 ------RNPFHPFVTFDTAALSGLVLGQTV-------------LAKACNAAGMSFDSAQA 182

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 183 HSALYDTLQTADLFCELVNR 202


>gi|291067016|gb|ADD74132.1| DNA polymerase III epsilon subunit-like protein [Rickettsia felis]
          Length = 377

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 54/209 (25%), Gaps = 31/209 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  D ET G     D+  +   V+ +        +  +                  +TGI
Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQQPIPLRITELTGI 185

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       ++ E   +  +        II  +N  FD  +               +  
Sbjct: 186 TDEMVQGK-AIDQEAVTQFLEEV-----DIIIAHNAAFDRPFFDR------MFPEVITKV 233

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G SR D                    + +   S KL+ L       +            
Sbjct: 234 WGCSRVD-----------------IDWKAEKIESHKLEYLTYKYNFFYEGHRAVIDCRAG 276

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLR 212
              L   +   K  + + L +  +K +  
Sbjct: 277 LHLLAQTLPITKTLVLKQLLNNCHKTRFN 305


>gi|292899378|ref|YP_003538747.1| ribonuclease T [Erwinia amylovora ATCC 49946]
 gi|291199226|emb|CBJ46341.1| ribonuclease T [Erwinia amylovora ATCC 49946]
          Length = 224

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 59/200 (29%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A V  ++D     + + T  F  +P    +   EA+   G
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLAEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  ++  +N  FD  +      R    
Sbjct: 80  IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L     A G+      A
Sbjct: 140 ------RNPFHPFVTFDTAALSGLVLGQTV-------------LAKACNAAGMSFDSAQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 181 HSALYDTLQTADLFCELVNR 200


>gi|197261383|ref|YP_002154199.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LBL3]
 gi|197244473|emb|CAR31208.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
           LBL3]
          Length = 184

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 65/197 (32%), Gaps = 31/197 (15%)

Query: 5   FVIYDYETFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           F ++D ET G             R  +FAGV  D + + ++  E F C      + +   
Sbjct: 3   FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGE-KILDEVE-FIC--NPGIVIEEII 58

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             ITG+  +  ++      +  +++  FF+  +  I   +N+ FD +       R     
Sbjct: 59  TKITGLKNEDLIKHP-SFLDQRQKVRDFFARADANI--AHNLPFDKFMLTCDLARGKLGL 115

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
              ++ + +     +  +          +            +LQ L       +V  H A
Sbjct: 116 EEVNFPSLD-----ICTVEESAPLFGHRM------------RLQHLYEHYCGPYVQKHRA 158

Query: 178 KADVYATLALVWLIREK 194
             DV     +   +   
Sbjct: 159 LDDVRLLNEVCKRMGVY 175


>gi|293396307|ref|ZP_06640585.1| ribonuclease T [Serratia odorifera DSM 4582]
 gi|291421096|gb|EFE94347.1| ribonuclease T [Serratia odorifera DSM 4582]
          Length = 226

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 61/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D+    + + T  F  +P +     PEA+   G
Sbjct: 31  VVIDIETAGFNARTDALLEIAAVTLKMDQDGWLQQDETLHFHVEPFEGANLQPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPHNPLRGAVSEYDALHAIFKAVRKGIKDQGCNRAIIVAHNANFDHSFLMAAAERAGLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +A     +   AH 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAAGMAFDSSQAHS 193

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 194 ALYDTEQTALLFCELVNR 211


>gi|320011855|gb|ADW06705.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           flavogriseus ATCC 33331]
          Length = 241

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 7/109 (6%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  D          V            P A  I G+T   
Sbjct: 12  FDTETTGVDVEEDRIVSAALVVQDAAG---GRLRVTRWLVNPGIPVPPGATEIHGLTDDH 68

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
             R+G   A     I +  +        ++  N   FD         R+
Sbjct: 69  LQRNGRWPAPVVEEIARSLAEQCATGRPLVVMNAP-FDLTLLDRELRRH 116


>gi|152970543|ref|YP_001335652.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|330015632|ref|ZP_08308213.1| ribonuclease T [Klebsiella sp. MS 92-3]
 gi|166228567|sp|A6TA01|RNT_KLEP7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|150955392|gb|ABR77422.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|328531231|gb|EGF58076.1| ribonuclease T [Klebsiella sp. MS 92-3]
          Length = 215

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 61/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D     + + T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E +    I +        S  +  I+  +N  FD  ++     R    
Sbjct: 80  INPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      +A     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACIAAGMPFDGAQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTEQTAQLFCEIVNR 200


>gi|154496866|ref|ZP_02035562.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
 gi|150273824|gb|EDN00937.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
          Length = 191

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 29/190 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   ++ +D ET   + A DR +    + V    E              +   D   + +
Sbjct: 1   MNGRYIAFDVET--PNYANDRMSAIG-ITVVEAGEIAGEYYTL---VNPEQRFDRFNIAL 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP+          E  R I          ++  +N  FD                  
Sbjct: 55  TGITPEMVADKP-TFPELWREIGPLMDSG---LLIAHNAPFDMSVLAKCLRDYG------ 104

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                         +R            P       + KL  L+   G+E  + H   +D
Sbjct: 105 --------ICWHPTVRYACTCQMSRRLLP----QLPNHKLNTLSDYLGLELDHHHAG-SD 151

Query: 181 VYATLALVWL 190
             A   ++  
Sbjct: 152 SMACGEILLY 161


>gi|159045988|ref|YP_001534782.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913748|gb|ABV95181.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 230

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 29/195 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +  DR  +  GV +             +  P         A  + G+ 
Sbjct: 4   IVLDTETTGFEPSEGDRLVEIGGVEL-FNHVPTGRVYHQYINPQRSMPQS--AFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +  AE +     F        +  +N  FD  +                   
Sbjct: 61  DDFLADKPL-FAEVAEAFLDFIGDAK---LVIHNAAFDMKFLNAELGWLGKPLLPMEQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                D L + R  +  SP                L  L    G+++     H A  D  
Sbjct: 116 ----IDTLAIARRKFPGSPA--------------SLDALCRRFGVDNSAREKHGALLDSE 157

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 158 ILAEVYLELIGGQQP 172


>gi|218148597|ref|YP_002364365.1| hypothetical protein PP141_gp57 [Pseudomonas phage 14-1]
 gi|218059793|emb|CAU13913.1| hypothetical protein [Pseudomonas phage 14-1]
 gi|294663797|gb|ADF29351.1| putative DNA polymerase III epsilon subunit [Pseudomonas phage
           JG024]
          Length = 184

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 65/197 (32%), Gaps = 31/197 (15%)

Query: 5   FVIYDYETFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           F ++D ET G             R  +FAGV  D + + ++  E F C      + +   
Sbjct: 3   FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGE-KILDEVE-FIC--NPGIVIEEII 58

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             ITG+  +  ++      +  +++  FF+  +  I   +N+ FD +       R     
Sbjct: 59  TKITGLKNEDLIKHP-SFLDQRQKVRDFFARADANI--AHNLPFDKFMLTCDLARGKLGL 115

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
              ++ + +     +  +          +            +LQ L       +V  H A
Sbjct: 116 EEVNFPSLD-----ICTVEESAPLFGHRM------------RLQHLYEHYCGPYVQKHRA 158

Query: 178 KADVYATLALVWLIREK 194
             DV     +   +   
Sbjct: 159 LDDVRLLHEVCKRMGVY 175


>gi|315179445|gb|ADT86359.1| DNA polymerase III, epsilon chain [Vibrio furnissii NCTC 11218]
          Length = 224

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 16/204 (7%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G D   D       V +    + I   E  +         DP+ V +  I PQ 
Sbjct: 37  LDIETSGLDAEHDHIVSIGWVPIVN--QVIRLAEARYFLITPSGQDDPQQVVLHHIMPQM 94

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
             R G+     ++ I   F+     ++  +    +  +  +   ++ +      W     
Sbjct: 95  -QRQGIP---LAQAIELLFTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDLPIVW----- 145

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D L + +A   ++P      + +D    ++L  +     +    AH A +D  AT  L
Sbjct: 146 -LDTLKIEQAYAQYAPYNTPHSNAND----WRLSTVRKRYHLPAYQAHHALSDAIATAEL 200

Query: 188 VWLIREKKPKLFEYLYDYRNKNQL 211
               + +         +   K  +
Sbjct: 201 YLAQQNRLFAKAYVPLELLMKASV 224


>gi|297184143|gb|ADI20262.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 442

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 28/209 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D E  G     +R    A + V    E ++           +   DP    +TGIT
Sbjct: 3   FAVIDIECTGGTFGSERIIDVA-IFVLENGEVVDQLVSL---VNPEKGIDPYVTKLTGIT 58

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E ++R+ +       C    +NI FD    +  F    +D        
Sbjct: 59  NKMVRTAPK-FYELAKRVVKITED---CTFVAHNISFDYRVFQQEFESMEFD-------- 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                          A                ++ L+ ++   G+ +   H A+ D   T
Sbjct: 107 ------------YHRATLDTIPYCERIFPDWENYGLKTVSKELGLVNSARHRAEGDARLT 154

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRK 213
           L L+ ++ EK    +        +  +R+
Sbjct: 155 LELLKILLEKDRDAYLSKVHVSKEASVRR 183


>gi|332559710|ref|ZP_08414032.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N]
 gi|332277422|gb|EGJ22737.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N]
          Length = 229

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 54/197 (27%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +   R  +   V     +  + +   +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFEPSEGHRIVEIGAV---ELFNHMPTGRTYHQYINPERPMPNEAFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      V    F+     F        +  +N  FD  +      R            
Sbjct: 61  DEFLRDKPV----FAAIGRAFLDFVGEARLVIHNAVFDMKFLNFELGRAGLPRLA----- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
            +   D L + R  +  +P                L  L    G+++     H A  D  
Sbjct: 112 PDQALDTLALARQRFPGAPAT--------------LDALCRRFGVDNSAREKHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 158 ILAEVYLELIGGRQPDF 174


>gi|294675627|ref|YP_003576242.1| DNA polymerase III subunit epsilon [Rhodobacter capsulatus SB 1003]
 gi|294474447|gb|ADE83835.1| DNA polymerase III, epsilon subunit [Rhodobacter capsulatus SB
           1003]
          Length = 231

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 55/197 (27%), Gaps = 28/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +   R  +   V +            +      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFEPSEGHRIVEIGAVEL-MNHVPTGR--TYHQYINPERAMPQEAFAVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         ++    F    +  +I  +N  FD  +                   
Sbjct: 61  DDFLRDKPK-FGAIAQDFLDFIGDDSKLVI--HNAAFDMKFLNAE--------------L 103

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
           G  +  LL + RA+   +    ++P          L  L    GI++     H A  D  
Sbjct: 104 GWVQKPLLPMDRALDTLAMARRKFPGSPAT-----LDALCRRFGIDNSARTLHGALLDSE 158

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 159 ILAEVYLELIGGRQPGF 175


>gi|157370439|ref|YP_001478428.1| ribonuclease T [Serratia proteamaculans 568]
 gi|157322203|gb|ABV41300.1| ribonuclease T [Serratia proteamaculans 568]
          Length = 226

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D     + + T  F  +P +     PEA+   G
Sbjct: 31  VVIDIETAGFNAKTDALLEIAAVTLKMDEDGWLQQDETLHFHVEPFEGANLQPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +A     +   AH 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAADIPFDSAQAHS 193

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRN 207
           A  D   T  L   +  +  +L  +     N
Sbjct: 194 ALYDTEQTAQLFCELVNRWKRLGGWPLAVTN 224


>gi|84514924|ref|ZP_01002287.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Loktanella vestfoldensis SKA53]
 gi|84511083|gb|EAQ07537.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Loktanella vestfoldensis SKA53]
          Length = 228

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 51/197 (25%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +  DR  +   V +            +            EA  + G+ 
Sbjct: 4   IVLDTETTGFEPSEGDRIVEIGAVELIGHM-PTGR--TYHQYINPQRTMPAEAFAVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + +     F        +  +N  FD  +           +       
Sbjct: 61  DDFLADKPL-FKDIADDFLTFIGDAK---LVIHNAAFDMKFLNAELGWLHKPALPM---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            N   D L + R  +  SP                L  L    GI++     H A  D  
Sbjct: 113 -NRAVDTLMIARRKFPGSPA--------------SLDALCRRFGIDNAARTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 158 ILAEVYLELIGGRQPDF 174


>gi|300781383|ref|ZP_07091237.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
           33030]
 gi|300533090|gb|EFK54151.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
           33030]
          Length = 233

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 66/232 (28%), Gaps = 39/232 (16%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET   +    R    A VR+D        T               +A  I GIT +K
Sbjct: 20  FDLETTSANPREARIVTSALVRIDGSSMTATETLA-----DPGVDIPEQAARIHGITTEK 74

Query: 68  ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A  +G    +  +               ++ +N                        +  
Sbjct: 75  ARAEGRPHDDVLQETVAAIKQAWDEGLTLVVFNAPYDLSVLRA----------LTGDFTV 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               +D L + RA+  +   G +            L  L+   G+   NAH+A +D  A 
Sbjct: 125 TGPVFDPLLIDRAMDRYRKGGKR-----------NLGALSEFYGVRLDNAHEATSDATAA 173

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
             + W       K++  L          +L ++     + H        +  
Sbjct: 174 ARIAWKQV---NKVWPQLSQM-------ELDELMEFQAVQHFEIQTEFRKFC 215


>gi|27904727|ref|NP_777853.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
 gi|31340041|sp|Q89AN3|DPO3E_BUCBP RecName: Full=DNA polymerase III subunit epsilon
 gi|27904124|gb|AAO26958.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
          Length = 245

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 34/232 (14%)

Query: 2   TNHF---VIYDYETFGRDVA-----LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
              +   ++ D ET G + A       +  +   V        + +   F      + L 
Sbjct: 1   MKKYDRKIVLDIETTGMNPAGCFYKNHKIIEIGAV---EMINNVFTGNNFHSYIQPNRLI 57

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           D ++  I GIT    L       E S +  ++ +  +  I   +N +FD  +       N
Sbjct: 58  DKQSFKIHGITDNFLLDKPKFH-EISVKFLEYITNSDLII---HNAKFDVGFINYEL--N 111

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEH 171
             +S +    +  +  D L + R ++                    L  L       + H
Sbjct: 112 MINSDKRKISDYCNVVDTLPLARQLFPG--------------KKNSLDALCNRYKINVSH 157

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
            + H A  D      +   +   +  +        N N ++K   + +  P 
Sbjct: 158 RDFHSALIDAKLLAKVYTFMTSFQQSI-SIFDKNSNLNSIQKNAKLDSRVPF 208


>gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
 gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
          Length = 230

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I+D ET G D A  DR  +   + +            F      +      A  + G++
Sbjct: 4   IIFDTETTGFDPASGDRMVEIGCIEL-VNRVPTGR--TFHAYYHPERDMPAAAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                +  V        +  F        +  +N RFD  +  +      +         
Sbjct: 61  ADFLAKHPVFSLGAL-ELLDFLEDS---PLVAHNARFDFGFLNHELTLCGHP-----QVG 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
            +   D + + R ++  +                 L  L    GI+  H   H A  D  
Sbjct: 112 MHRMIDTVAIARQLHPGA--------------KHSLDALCTRYGIDRSHRVKHGALLDAE 157

Query: 183 ATLALV 188
               L 
Sbjct: 158 LLAQLY 163


>gi|312870744|ref|ZP_07730851.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           3008A-a]
 gi|312873738|ref|ZP_07733783.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2052A-d]
 gi|329919615|ref|ZP_08276604.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN
           1401G]
 gi|311090736|gb|EFQ49135.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           2052A-d]
 gi|311093756|gb|EFQ52093.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
           3008A-a]
 gi|328937420|gb|EGG33842.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN
           1401G]
          Length = 299

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 29/180 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  +VI D ET G D   +   +   +++ +    IE      C    +         +T
Sbjct: 128 TKPYVIIDLETTGLDYINNNIIEIGAIKIAKN---IEEYS---CIVKQNITLPNAIKILT 181

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+  +  + G  E+   + +  F    +  ++GYN   FD  +      RN        
Sbjct: 182 GISDAEL-KTGKDESVAIKELCTFI--GDKALVGYNV-NFDIRFINEALKRNGQ------ 231

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N  +D++  ++    F               ++KL  +    GI     H A  DV
Sbjct: 232 SQLTNKVYDVMKYVKRDKMFL-------------KNYKLDTVLSEYGINIKVPHRAIEDV 278


>gi|260597773|ref|YP_003210344.1| ribonuclease T [Cronobacter turicensis z3032]
 gi|260216950|emb|CBA30569.1| Ribonuclease T [Cronobacter turicensis z3032]
          Length = 223

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D       + T  F  +P +  +  PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    +A G+      A
Sbjct: 140 ------RNPFHPFVTFDTAALSGLALGQTV-------------LAKACIAAGMPFDSAQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTEQTALLFCEIVNR 200


>gi|156934185|ref|YP_001438101.1| ribonuclease T [Cronobacter sakazakii ATCC BAA-894]
 gi|166228564|sp|A7MFC6|RNT_ENTS8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|156532439|gb|ABU77265.1| hypothetical protein ESA_02012 [Cronobacter sakazakii ATCC BAA-894]
          Length = 223

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D       + T  F  +P +  +  PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    +A G+      A
Sbjct: 140 ------RNPFHPFVTFDTAALSGLALGQTV-------------LAKACIAAGMPFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTEQTALLFCEIVNR 200


>gi|331002519|ref|ZP_08326037.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410335|gb|EGG89769.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 60/195 (30%), Gaps = 28/195 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +++  D ET G  +  D+  +   +++ +     ++     C    +   + E + +TGI
Sbjct: 5   NYIAIDLETSGIKLRSDKIIEVGLLKI-KDSHITDTFS---CLINPEIEINEEILRLTGI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             ++         E    I +F    +   +  +N  FD  + +    R           
Sbjct: 61  KKRELYNA-ESINEVIGHIVEFCEDYD---LLGHNTVFDYSFIKREASRAGL-------V 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + +                       L D     GIE  N H A +D Y 
Sbjct: 110 FDKKGLDTYKLCK-------------KILPADIKKNLTDACRYFGIERKNPHRAFSDAYY 156

Query: 184 TLALVWLIREKKPKL 198
           T  L   I E  P  
Sbjct: 157 THLLFQKIMENFPDF 171


>gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris]
          Length = 1341

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 14/116 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +++D ET G     D P + A      +      T     + AD      +A  +TGIT 
Sbjct: 137 IVFDLETTGLSKEKDHPVEIAA-----EAPLSGRTFSTLIRLADGMSISTKAEEVTGITT 191

Query: 66  QKALRDGVV-EAEFSRRIHQFFSV--------PNTCIIGYNNIRFDDYYSRNIFYR 112
            +     +    +      +F               ++G+N  RFD     +   R
Sbjct: 192 AQCKDPSLPTFPQAYASFLRFIEAEMEDAAPGAFPLLVGHNIERFDLPLLLHCAKR 247


>gi|295693069|ref|YP_003601679.1| CRISPR-associated protein, cas2 [Lactobacillus crispatus ST1]
 gi|295031175|emb|CBL50654.1| CRISPR-associated protein, Cas2 [Lactobacillus crispatus ST1]
          Length = 298

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 26/193 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
              + D ET G ++  D+      ++           E F+     D         IT +
Sbjct: 128 SLAVLDIETTGLNLEKDKIISIGAIKYLEN----NDCEKFYRLIKVDTEVPDNIEKITQL 183

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                   G+        + +F +  +  ++GYN             + N        + 
Sbjct: 184 NKGVLANKGIDIKTALLDLRKFLA--DRIVVGYNLPFDI-------NFLNRDFKKYCHYS 234

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N   DLL  ++    F  +             + L  +     I++ N H++ AD  A
Sbjct: 235 LLNECVDLLSAVKKKNVFLDN-------------YHLSTVLENYNIKNSNPHNSLADAVA 281

Query: 184 TLALVWLIREKKP 196
           T+ L+  + +   
Sbjct: 282 TMELLKKLIKNDN 294


>gi|254522385|ref|ZP_05134440.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
 gi|219719976|gb|EED38501.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
          Length = 169

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 26/193 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            +  V  D ET G    L  R  +   V +    +       F          D  A  +
Sbjct: 1   MSRIVALDTETTGISHRLGHRVIEIGAVEL-IDGQLTGRQ--FHTYLQPQRKVDRGAQRV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+    +   +  ++ +    +  +      +  +N  FD  +  N    +       
Sbjct: 58  HGISDAMLVGKPLFSSKAA----ELLAFLRGSEMVAHNATFDVGFLDNELRLSGIPGTLA 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                          R   +      +WP +       KL D+     I  +   H A  
Sbjct: 114 QH------------CRITCSLKLARGRWPGQG-----NKLDDVLQRLRIPGNRGLHGALK 156

Query: 180 DVYATLALVWLIR 192
           D +    ++  +R
Sbjct: 157 DAHLLAQVIPHLR 169


>gi|294790489|ref|ZP_06755647.1| DNA polymerase III domain protein [Scardovia inopinata F0304]
 gi|294458386|gb|EFG26739.1| DNA polymerase III domain protein [Scardovia inopinata F0304]
          Length = 241

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 61/225 (27%), Gaps = 30/225 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G + +  R  +  G    R+   I   +               +  ++GI  
Sbjct: 44  IIFDTETTG-NFSDQRIIEIGG-LFLRKGVPIGEWQQL---INPGVNITHFSQHLSGIND 98

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                +       S  I  F +      I   N+ FD         R        S    
Sbjct: 99  AMIANEPP----ASTVIPWFINSIQNLTIVGYNVNFDINALNEEANRLGMSGISVSN--- 151

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D++D+ R                  + S+ L+ +A+   +     H A  D   T 
Sbjct: 152 --VIDVIDIAR-------------QSLPNSPSYSLEQVAILLNVSDTEKHRALDDAILTW 196

Query: 186 ALVWLIREKKPKLFEYLYD---YRNKNQLRKLIDIQNMTPLVHVS 227
                +     K      +     ++   +   D         VS
Sbjct: 197 KCWQKMESMNNKQIILSQEQVTTVSQRNSKIRNDKNKACSFKQVS 241


>gi|254524227|ref|ZP_05136282.1| exonuclease [Stenotrophomonas sp. SKA14]
 gi|219721818|gb|EED40343.1| exonuclease [Stenotrophomonas sp. SKA14]
          Length = 188

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 67/204 (32%), Gaps = 26/204 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRP---------AQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
            +    YD ET G   A   P          Q A   V+    K+ S+     KP    +
Sbjct: 1   MSLIFFYDTETTGL-PAFSEPSDAPHQPHLVQVAASLVNATTRKVISSIDVLVKPDGWTI 59

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           P+ E   I GIT ++A + G+ E+  +  +   + + +  +   +   FD    R    R
Sbjct: 60  PE-EVTRIHGITNEQAEQCGLDESLVTELVLDMWRLSD--VRIGHVESFDARILRIALKR 116

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                    W  G ++                  + P   D    F         G E  
Sbjct: 117 YATAQVADEWKAGTAQCTA-----KAAKALMGMTKNPKLIDAHRHF--------LGREFD 163

Query: 173 NAHDAKADVYATLALVWLIREKKP 196
            AH A AD+ A   + W + + + 
Sbjct: 164 GAHTAHADMVACREIHWAMADHEN 187


>gi|255264769|ref|ZP_05344111.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62]
 gi|255107104|gb|EET49778.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62]
          Length = 231

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 53/197 (26%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V +         T   +  P        EA  + G+ 
Sbjct: 4   IVLDTETTGFEPNEGDRIVEIGAVEL-LNHVPTGRTYHQYINPKRSM--PKEAFEVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      A+ ++    F     T  +  +N  FD  +                   
Sbjct: 61  DDFLRDKP-FFADIAQAFVDFV---GTDKMIIHNAAFDMKFLNAELGWVNRPLLPMDQA- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  SP                L  L    GI++ +   H A  D  
Sbjct: 116 ----LDTLAIARRRFPGSPA--------------SLDALCRRFGIDNSSRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLF 199
               +   +   +   F
Sbjct: 158 ILAEVYLELIGGRQPDF 174


>gi|171780060|ref|ZP_02920964.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281408|gb|EDT46843.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 827

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 29/203 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  + + D E  G   A+    Q   V ++   + +++ +                + +T
Sbjct: 6   SQKYAVVDLEATGAH-AMAEIIQVGIVIIEND-QIVKTYQT---DVNPHEALTEHIIHLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++  +     ++ ++ I+   S    C+   +N++FD        +   Y+     
Sbjct: 61  GITDEQLAKAP-DFSKVAQEIYHLISD---CVFVAHNVKFDANLLAEKLFLEGYE----- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R  L+D +     F P   +          + L  LA    ++  +AH A +D 
Sbjct: 112 -----LRTPLVDTVELSQVFYPTLEK----------YTLGHLADVLQLDLTDAHTAISDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
           YAT  L+  ++EK   L + L +
Sbjct: 157 YATAQLLLKLKEKMESLPKELLE 179


>gi|261885284|ref|ZP_06009323.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 243

 Score = 73.3 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G  +   +  +   +++     +I   E F   P            +TGI 
Sbjct: 51  FCVVDIETSGG-INSGQIIEIGALKL-LDGVEIGRFESFVYAPN----VPENISELTGIY 104

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                +        +  + +F       +   +N++FD  +      R  +         
Sbjct: 105 AADLAKAPS----LANVLEKFKLFLGDSVFVAHNVKFDYDFISISLERLGFGMLLN---- 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   +D+ R              R   +  + L  L    GI + + H A  D  A 
Sbjct: 157 --RRICTIDLAR--------------RTIISQKYGLGTLKELLGISNAH-HRALNDAIAA 199

Query: 185 LALVWLI 191
             +    
Sbjct: 200 AEIFKEC 206


>gi|329945803|ref|ZP_08293490.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528251|gb|EGF55229.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 258

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 17/196 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           +D ET G D   DR    A V R +R+ + +    V              A  + G+T +
Sbjct: 26  FDTETTGVDPGRDRLVTAALVWRAERRADGVRQQSVTTWLADPGVEIPEAASAVHGVTTE 85

Query: 67  KALRDGVVEAEFSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           ++  +G   AE    +           T +I +N   +D         R+          
Sbjct: 86  RSRSEGRPVAEVLAEVSDHLVAAMTAGTPVIVFNA-SYDLTLMETELARHGLP--TMRSR 142

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVY 182
            G     + D +    A                  +L DL    G     + H A+ DV 
Sbjct: 143 LGRELGPIADPLVLDRAV---------DRYRRGKRRLGDLCEVYGVHVDEDLHTAEVDVA 193

Query: 183 ATLALVWLIREKKPKL 198
           ATL ++  +    P++
Sbjct: 194 ATLDILEALATAHPQI 209


>gi|323126941|gb|ADX24238.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 820

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 100/336 (29%), Gaps = 38/336 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT  + + D E      A     Q   V ++ + E +E+ +                  +
Sbjct: 5   MTRKYAVVDLEATNAG-ATAAIIQVGIVIIEGK-EVVETYQT---DINPHEPLSDHIKAL 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  +  +     ++ ++ I++  S    C+   +N++FD        +   Y+    
Sbjct: 60  TGITDAQLAQAPE-FSQVAKTIYELISD---CVFVAHNVKFDANLLAEALFFEGYELLT- 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R D +++ +  Y                  + L  L+   G+E   AH A AD
Sbjct: 115 ------PRVDTVELAQIFY-------------PSLEKYTLGHLSAELGLELEEAHTAIAD 155

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT AL   + +K   L +   +         L +   +             R+   L 
Sbjct: 156 ARATAALFIKLLQKIESLPKECLESLLPYADSLLFETAMVIEQGFNQAKPYDPRTYVHLG 215

Query: 241 APVAWHPRYK---------DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291
             +      +            I   L G     +     QL +  +             
Sbjct: 216 KMLLPKHLKRQSSPYQLSKQFAINMALLGLEERSKQASFAQLIEADYHQRQASFIEAQTG 275

Query: 292 IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLEN 327
           I + +    P+L   D  +        I   + + N
Sbjct: 276 IGKTYGYLLPLLAQEDQSQIIVSVPTKILQDQLMAN 311


>gi|190576387|ref|YP_001974232.1| putative exonuclease [Stenotrophomonas maltophilia K279a]
 gi|190014309|emb|CAQ47956.1| putative exonuclease [Stenotrophomonas maltophilia K279a]
          Length = 169

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 54/193 (27%), Gaps = 26/193 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            +  V  D ET G    L  R  +   V +    +       F          D  A  +
Sbjct: 1   MSRIVALDTETTGISHRLGHRVIEIGAVEL-IDGQLTGRQ--FHTYLQPQRKVDWGAQRV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+    +   +  ++ +  + +F        +  +N  FD  +  N    +       
Sbjct: 58  HGISDAMLVGKPLFSSKAA-ELLEFLRGSE---MVAHNATFDVGFLDNELRLSGIPGTLA 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKA 179
                          R   +      +WP +       KL D+     I      H A  
Sbjct: 114 QH------------CRITCSLKLARGRWPGQG-----NKLDDVLQRLRIPSQRGLHGALK 156

Query: 180 DVYATLALVWLIR 192
           D +    ++  +R
Sbjct: 157 DAHLLAQVIPHLR 169


>gi|114319997|ref|YP_741680.1| DNA polymerase III subunit epsilon [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226391|gb|ABI56190.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 240

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 49/187 (26%), Gaps = 12/187 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D ET G D           V  D   ++I   +              E++ + GIT
Sbjct: 50  LVALDMETTGLDPDRHAIVSIGLVPFD--LQRIRLPDRRHWLLQPPRPLLSESITLHGIT 107

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      +E    + +  +     +   +    +  +          +        
Sbjct: 108 HSDLANAP-DLSEVLDELLEALAGRQPVV---HYRNIERPFLDTAVRARVGEGLL----- 158

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +++    +  S                +L D  L  G+   ++H A  D  AT
Sbjct: 159 -FPVIDTMELEARRHRQSGWSRLKRFLGQNPVPIRLHDSRLRYGLPAYHSHHAVNDALAT 217

Query: 185 LALVWLI 191
             L    
Sbjct: 218 AELFQAQ 224


>gi|269798688|ref|YP_003312588.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
 gi|269095317|gb|ACZ25308.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
          Length = 862

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 25/190 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+YD E+ G D A DR  Q A +R+D   + +E+ E F        +P  ++  + G + 
Sbjct: 495 VVYDVESTGTDTAQDRIIQIAAIRIDEDGQVLETFERF---INPG-VPVGQSEEVHGFSD 550

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                 G   A   +   +F       II  +N+ +D     N   R+            
Sbjct: 551 AYLQEHGEEPAIVLQAFKEF---SKNAIIVGHNVNYDVTIFTNELARHNL-----GNPEF 602

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +D LD+ R  Y                 + KL  LA    I H   H+A  D+ AT 
Sbjct: 603 KAIYDTLDIYRRFY-------------PNLPNHKLGFLASKFPIHHEPTHNAMDDILATA 649

Query: 186 ALVWLIREKK 195
            L+    ++ 
Sbjct: 650 QLLIYAVKEN 659


>gi|294794415|ref|ZP_06759551.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
 gi|294454745|gb|EFG23118.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
          Length = 862

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 25/186 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+YD E+ G D + DR  Q A +R+D   + +E+ E F        +P  ++  + G + 
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERF---INPG-IPVGQSKEVHGFSD 550

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                 G   A   +   +F       II  +N+ +D     N   R+            
Sbjct: 551 AYLQEHGEDPATVLKAFKEF---SKDAIIVGHNVNYDVTIFTNELARHNL-----GNPEF 602

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +D LD+ R  Y                 + KL  LA    I H   H+A  D+ AT 
Sbjct: 603 KAIYDTLDIYRRFY-------------PNLPNHKLGFLASKFPIHHEPTHNAMDDILATA 649

Query: 186 ALVWLI 191
            L+   
Sbjct: 650 QLLIYA 655


>gi|126342108|ref|XP_001377513.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Monodelphis domestica]
          Length = 241

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 63/208 (30%), Gaps = 31/208 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47
             FV  D E  G   A    A+ +   +          D          ++   +  C  
Sbjct: 8   ETFVFLDLEATGLPNAHPEIAEISLFAIHRFSLEHPERDESGTLQLPRVLDKLTLCMC-- 65

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFS--VPNTCIIGYNNIRFDD 103
             +    P+A  ITG++ Q    +     +    R + +F        C++ +N   +D 
Sbjct: 66  -PEQNFTPKASEITGLSNQNLADNHKAGFDGAVIRALWEFLKRQKSPICLVAHNGFDYDF 124

Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              R    R   D        G    D L  +R                 G  S+ L +L
Sbjct: 125 PLLRTELQRLGADL-----PGGTVCLDTLPALRG---LDKAHHHSTRASHGKKSYSLGNL 176

Query: 164 -ALANGIEHVNAHDAKADVYATLALVWL 190
                  E   AH A+ DVYA + +   
Sbjct: 177 YRRYFDDEPQAAHSAEGDVYALVMVFLH 204


>gi|213162306|ref|ZP_03348016.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 145

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 12/118 (10%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            GI  +  L   V    F+  + +F        +  +N  FD  +    F     D  
Sbjct: 69  HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIP 122


>gi|150402066|ref|YP_001329360.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
 gi|150033096|gb|ABR65209.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
          Length = 190

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 12/195 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G      + AQ + +  D      +    ++            A  I G+T
Sbjct: 2   YVFLDTETTGLHP--GQIAQLSYLVTDEDLNLKKVFNQYYSV----DRMSRSAAKIHGLT 55

Query: 65  PQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            +    L +G+   +    +          II  +NI FD  + +  F R   +      
Sbjct: 56  MEILDELSNGMTFEDTVDEVRDDLEDS---IIIGHNISFDIRFLKTEFERLGPEYVPKDK 112

Query: 123 DNGNSRWDLLDVMR-AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 +  +  +        P  ++     +      L+    A G   V  HDA+ D 
Sbjct: 113 FCTMFHFTPICKLPGQKRYKRPKLVELMEFLEQCPHEGLEFTKEAYGCSDVGFHDARYDT 172

Query: 182 YATLALVWLIREKKP 196
                          
Sbjct: 173 GILYLCYKKGVLLDH 187


>gi|86146291|ref|ZP_01064616.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|85836002|gb|EAQ54135.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
          Length = 238

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 53/192 (27%), Gaps = 12/192 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+  D+ET G +   D       V       +I   +            + ++V I GI
Sbjct: 47  TFLAVDFETTGLNPNKDGIITIGLVPF--TLNRIYLRQAKHWTLRPKQKLEEDSVVIHGI 104

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +      +E    I +  S+     + +      D+    +  R           
Sbjct: 105 THNDIIDAP-DLSEVLDEILE--SMGGHIPVVHYRRIERDFLDNALKVRLGEGI------ 155

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++   I      G+    +     S +L        +     H A  D  A
Sbjct: 156 -EFPVLDTLEIESQIQNKLAGGLWNKLKGKKPASVRLGQSRRRYHLPDYTPHHALTDAIA 214

Query: 184 TLALVWLIREKK 195
           T  L+       
Sbjct: 215 TAELLQAQIAHH 226


>gi|84393001|ref|ZP_00991768.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
 gi|84376355|gb|EAP93236.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
          Length = 238

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 12/192 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+  D+ET G +   D       V       +I   +            + ++V I GI
Sbjct: 47  TFLAVDFETTGLNPNKDGIITIGLVPF--TLNRIYLRQAKHWTLRPKQKLEEDSVVIHGI 104

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +      +E    I +  +      + +      D+    +  R           
Sbjct: 105 THNDIIDAP-DLSEVLDEILESLA--GHIPVVHYRRIERDFLDNALKVRLGEGI------ 155

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++   I      G+    +     S +L        +     H A  D  A
Sbjct: 156 -EFPVLDTLEIESQIQNKLAGGLWNKLKGKKPASVRLGQSRRRYHLPDYTPHHALTDAIA 214

Query: 184 TLALVWLIREKK 195
           T  L+       
Sbjct: 215 TAELLQAQIAHH 226


>gi|218709810|ref|YP_002417431.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32]
 gi|218322829|emb|CAV19006.1| DNA polymerase III polC-type [Vibrio splendidus LGP32]
          Length = 238

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 53/192 (27%), Gaps = 12/192 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+  D+ET G +   D       V       +I   +            + ++V I GI
Sbjct: 47  TFLAVDFETTGLNPNKDGIITIGLVPF--TLNRIYLRQAKHWTLRPKQKLEEDSVVIHGI 104

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +      +E    I +  S+     + +      D+    +  R           
Sbjct: 105 THNDIIDAP-DLSEVLDEILE--SMGGHIPVVHYRRIERDFLDNALKVRLGEGI------ 155

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++   I      G+    +     S +L        +     H A  D  A
Sbjct: 156 -EFPVLDTLEIESQIQNKLAGGLWNKLKGKKPASVRLGQSRRRYHLPDYTPHHALTDAIA 214

Query: 184 TLALVWLIREKK 195
           T  L+       
Sbjct: 215 TAELLQAQIAHH 226


>gi|317011686|gb|ADU85433.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           SouthAfrica7]
          Length = 287

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 61/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V    + I   E     K   DY+ D     +TGI
Sbjct: 73  FSFIDLETTGSCPIKHEILEIGAVQV-SGGKIINRFETLVKVKSVPDYISD-----LTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAP-SVYEALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               +   LD+ R                     + L  L    G     +H A AD  A
Sbjct: 180 ---LKLCTLDLSRRAILSM--------------RYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPNYVKTTMDLIDFSKCANALIKRPPR 260


>gi|313896094|ref|ZP_07829648.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529365|ref|ZP_08030453.1| exonuclease [Selenomonas artemidis F0399]
 gi|312975519|gb|EFR40980.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138331|gb|EFW30225.1| exonuclease [Selenomonas artemidis F0399]
          Length = 179

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 25/194 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    +++D ET G     D     A   VD   + +           +     P+A  +
Sbjct: 1   MLEKILVFDTETTGFRSD-DEVLTLA--VVDGAGKTVVDGMYAPVSKKEW----PDAEKV 53

Query: 61  TGITPQKALR-DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
             I+P        ++       + + F+ P T ++GYN                     R
Sbjct: 54  NRISPAMVADCAPILTHRA--ELERLFNDPETLLVGYNIEFDIRLL--------GQSGIR 103

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            +  N +        MR +      G +W    + A  ++              AH A A
Sbjct: 104 ITNPNRHDVMLAFSEMRKVPDARRGGYRWWKLTECAEYYR-------YNWGTTEAHGALA 156

Query: 180 DVYATLALVWLIRE 193
           D  ATL     +R+
Sbjct: 157 DTLATLYCYDQMRQ 170


>gi|163937886|ref|YP_001642772.1| exonuclease RNase T and DNA polymerase III [Bacillus
           weihenstephanensis KBAB4]
 gi|163865741|gb|ABY46797.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           weihenstephanensis KBAB4]
          Length = 271

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 32/190 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F ++D ET G D   ++  + A +R D + +++    +   K  +        V  T
Sbjct: 11  KEIFTVFDLETTGLDYKNEQVVEIAAIRTDLE-QELGRMHIL-VKLNEGKKLPDFLVDNT 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            +     +  G+VE +    +  F       I+  +   FD                   
Sbjct: 69  DLRDYMLVN-GMVEHQALINLMAFM---GNSIVVAHYAPFD------------------- 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +  L                        S  L   A   G++   AH A  D+
Sbjct: 106 -------FAYLFKALIAPELFLCTRSIERLLTPDKSASLAPTAERRGVKLEGAHRAMNDI 158

Query: 182 YATLALVWLI 191
            AT+ ++   
Sbjct: 159 EATIGVLKSQ 168


>gi|308234286|ref|ZP_07665023.1| CRISPR-associated endoribonuclease Cas2 [Atopobium vaginae DSM
           15829]
          Length = 297

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 26/191 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FVI D ET G +   D+  +   +R+    ++++  +    +  D     P    +TG
Sbjct: 128 KKFVILDIETSGLNETDDKIIEIGAIRICD--KQVDDYQCLIKR--DSLNLSPAITQLTG 183

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T  +    GV        + QF       ++GYN   FD  +  N              
Sbjct: 184 LTDIELANRGVNPNLALNGLKQFIGHLP--VLGYNI-AFDMRFINNELRSM------NEE 234

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D++  ++    F               S+ L ++    GI     H A  D  
Sbjct: 235 LLDNREIDVMRFIKKEKMFLE-------------SYALDNVLKVYGISATVPHRALGDAK 281

Query: 183 ATLALVWLIRE 193
               L   + +
Sbjct: 282 LIAKLALKVNK 292


>gi|254226650|ref|ZP_04920229.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V51]
 gi|125620819|gb|EAZ49174.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V51]
          Length = 236

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V      ++I  ++  +         + E++   GI
Sbjct: 46  SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEEESIVFHGI 103

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +     +  I+  +    +  + R            W   
Sbjct: 104 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 153

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q         S +L    +   +   + H A  D  A
Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQR-ITRQPLPSIRLGQSRMRYHLPPYSPHHALTDAIA 212

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 213 TAELFQAQCAHHLP 226


>gi|320094495|ref|ZP_08026269.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319978573|gb|EFW10142.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 238

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           +D ET G     DR    A V RV+ + +++ +                +A  + GIT +
Sbjct: 11  FDTETTGTSPFKDRLVTAALVLRVEGRDDQVATWLA-----DPGVEIPEQASAVHGITTE 65

Query: 67  KALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            A   G    E    +    +        +   N  +D         R+   ++      
Sbjct: 66  YAREHGRPVEEVLEEVAGCLTEHWFRGFPVVAFNASYDITLVDRELSRHGLATFA----- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADVYA 183
              R D   ++       P  +             L D+A   G+E   +AH A+ DV  
Sbjct: 121 --ERLDGEPML----VVDPLVLDRKLDRFRKGKKTLTDMAPVYGVEASPDAHTAEVDVAM 174

Query: 184 TLALVWLIREKKPKLFEY 201
           TL ++  I  K P+L ++
Sbjct: 175 TLNVLAGIARKFPELEDH 192


>gi|305682188|ref|ZP_07404992.1| exonuclease [Corynebacterium matruchotii ATCC 14266]
 gi|305658661|gb|EFM48164.1| exonuclease [Corynebacterium matruchotii ATCC 14266]
          Length = 230

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 56/257 (21%), Gaps = 45/257 (17%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET   +    R    A V +D      +                  A  + GIT + 
Sbjct: 16  FDLETTSANPFEARIVTSALVHIDSGGAHPQEFLA-----DPGVPIPEAATKVHGITTEY 70

Query: 68  ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A   G   A+                  +I YN                        +  
Sbjct: 71  AREHGSPHADVLAETIAAIRKAWTDGYTLIVYNASYDLTVLHSLEPGFLITGPVYDPY-- 128

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D +   Y                    L  L     +   NAH+A +D  A 
Sbjct: 129 ------VMDKLLDPY--------------RRGKRTLTALCEEYQVRLENAHEATSDALAA 168

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
             + W                  K +    I  Q M  L+    +      N      + 
Sbjct: 169 ARIAWKQA---------------KKRFASQISPQTMEQLMEFQAVGYYRSQNDFKKYLLG 213

Query: 245 WHPRYKDSVIGCNLSGD 261
                 D      L   
Sbjct: 214 RGKDASDVNTAWPLQTP 230


>gi|123965921|ref|YP_001011002.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200287|gb|ABM71895.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9515]
          Length = 270

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 29/191 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              +I D ET G D   D   +   +      + + S   F        +   EA  + G
Sbjct: 47  EKILILDTETTGLDENKDEIIEIGCILFHVTSKSVLSQVSFL-----FPVSSNEAEHVNG 101

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+  +         E      +     +  +I  +N+ FD  +                 
Sbjct: 102 IS-AEVSNIKQPWEEGLNFFLKLVDCAD--LIVAHNVEFDKKWFGKGR------------ 146

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L  +   +  S + I W  + +      + DLAL+  I   + H A +D +
Sbjct: 147 ---------LPNLEKNWICSLEDINWSFQKNLKNRPSVTDLALSFSIPVWSLHRALSDCF 197

Query: 183 ATLALVWLIRE 193
               +      
Sbjct: 198 YISEVFKKCEN 208


>gi|270293052|ref|ZP_06199263.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus sp. M143]
 gi|270279031|gb|EFA24877.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus sp. M143]
          Length = 157

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 29/180 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + +V+ D E      +  +  Q   V +    E I                D     +TG
Sbjct: 6   DRYVVVDLEATSTG-SKAKIIQVGIVVI-ENGEIINQYAT---DVNPHEPLDSHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T ++        ++ + +I +        I   +N++FD        +          +
Sbjct: 61  LTDRRLAAAPE-FSQVAGKIFELVKDG---IFVAHNVQFDANLLAEFLFFEG-------Y 109

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +    R D +++ + +Y                  + L  L    GIE  +AH A +D  
Sbjct: 110 ELRTPRVDTVELAQVLYPQFE-------------KYNLGILCQELGIELEHAHTALSDAQ 156


>gi|96979801|ref|YP_611004.1| v-trex [Antheraea pernyi nucleopolyhedrovirus]
 gi|94983334|gb|ABF50274.1| v-trex [Antheraea pernyi nucleopolyhedrovirus]
 gi|146229697|gb|ABQ12262.1| EXO III v-trex [Antheraea pernyi nucleopolyhedrovirus]
          Length = 230

 Score = 73.3 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 16/211 (7%)

Query: 3   NHFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPE 56
             +   D ET G         +  + +   V R+ E + S                   +
Sbjct: 5   KTYAFLDLETTGLPKLQNNQTQITELSLQCVTRE-ELLGSARVCNKLTLCFEPTVPVSDQ 63

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           A  +T +  +        +   +  I  F +   P  C++ YN   FD          N 
Sbjct: 64  ASVLTQLNAENLRGQPRFDGRAAALIESFLALLSPPVCLVAYNGFAFDFPILHKHLKDNG 123

Query: 115 Y-------DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
           +       D+Y   +   +               +     W        S+KL DL   +
Sbjct: 124 FAGAVQCADAYHGLFAILDGSGPPTMKRSKSGTVTVKLCPWQRGARPKQSYKLVDLYKKH 183

Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKL 198
               V  H A+ D    + L     ++  + 
Sbjct: 184 VGGSVEGHRAENDCAMMMRLAQKYADEFVEW 214


>gi|262190277|ref|ZP_06048547.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|262033843|gb|EEY52313.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
          Length = 233

 Score = 73.3 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V      ++I  ++  +         + E++   GI
Sbjct: 43  SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEEESIVFHGI 100

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +     +  I+  +    +  + R            W   
Sbjct: 101 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 150

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q  +R     S +L    +   +   + H A  D  A
Sbjct: 151 IEFPVLDTLEIERQLLDKQRSLWQRITRRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 209

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 210 TAELFQAQCAHHLP 223


>gi|256377528|ref|YP_003101188.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
 gi|255921831|gb|ACU37342.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 262

 Score = 73.3 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 55/196 (28%), Gaps = 21/196 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK--PADDYLPDPEAVFITG 62
            +  D ET   +   DR    A V V     +    +V                A  I G
Sbjct: 15  LLALDLETTDVEPRRDRIVT-ASVVVITPGAEGAKPDVRVRTWLADPGVPIPASATAIHG 73

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           I+ ++A  +G    E    +    +     +  +   N  FD         R+    +  
Sbjct: 74  ISTEQARAEGRPVGEVVAEVEALLAELWTASTPLCAFNAPFDLTMLDAELLRH----HGR 129

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           S        D L V RA+                     L  +   +G+    AH +  D
Sbjct: 130 SLRVSGPVVDPLCVDRALDPRRV------------GKRTLGAVCEHHGVRLEGAHTSAGD 177

Query: 181 VYATLALVWLIREKKP 196
             A   L W +    P
Sbjct: 178 ALAAARLAWKLARVHP 193


>gi|149408370|ref|YP_001294473.1| hypothetical protein ORF056 [Pseudomonas phage F8]
 gi|219523927|ref|YP_002455988.1| hypothetical protein PB1_gp58 [Pseudomonas phage PB1]
 gi|190333523|gb|ACE73778.1| conserved hypothetical protein [Pseudomonas phage PB1]
          Length = 184

 Score = 73.3 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 31/197 (15%)

Query: 5   FVIYDYETFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           F ++D ET G             R  +FAGV  D   E I     F C      + +   
Sbjct: 3   FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITD--GETILDEVEFIC--NPGIVIEEII 58

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             ITG+  +  ++      +  +++  FFS  +  I   +N+ FD +       R     
Sbjct: 59  TKITGLKNEDLIKHP-SFLDQRQKVRDFFSKADANI--AHNLPFDKFMLTCDLARGKLGL 115

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
              ++ + +     +  +          +            +LQ L       +V  H A
Sbjct: 116 EEVNFPSLD-----ICTVEESAPLFGHRM------------RLQHLYEHYCGPYVQKHRA 158

Query: 178 KADVYATLALVWLIREK 194
             DV     +   +   
Sbjct: 159 LDDVRLLHEVCKRMGVY 175


>gi|307131423|ref|YP_003883439.1| ribonuclease T (RNase T) [Dickeya dadantii 3937]
 gi|306528952|gb|ADM98882.1| ribonuclease T (RNase T) [Dickeya dadantii 3937]
          Length = 225

 Score = 73.3 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 64/208 (30%), Gaps = 26/208 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D     + + T  F  +P +  +  PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDETLHFHIEPFEGAILRPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPANPLRGAVSEYEALHEIFKAVRKGIKDLNCNRGIIVAHNATFDHSFLMAAAERCGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +A     +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAAEIPFDASQAHS 182

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204
           A  D   T  L   +  +  ++  +   
Sbjct: 183 ALYDTERTAQLFCELVNRWKRMGGWPLA 210


>gi|309807670|ref|ZP_07701611.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169103|gb|EFO71180.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus
           iners LactinV 01V1-a]
          Length = 275

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 29/180 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  +VI D ET G D   +   +   +++ +  E+      + C    +         +T
Sbjct: 106 TKPYVIIDLETTGLDYINNNIIEIGAIKIAKNIEE------YSCIVKQNITLPNAIKILT 159

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+  +    G  E+   + +  F    +  ++GYN   FD  +      RN        
Sbjct: 160 GISDAELKN-GKDESVAIKELCTFI--GDKALVGYNV-NFDIRFINEALKRNGQ------ 209

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N  +D++  ++    F               ++KL  +    GI     H A  DV
Sbjct: 210 SQLTNKVYDVMKYVKRDKMFL-------------KNYKLDTVLSEYGINIKVPHRAIEDV 256


>gi|315636786|ref|ZP_07892012.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22]
 gi|315478912|gb|EFU69619.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22]
          Length = 272

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 65/218 (29%), Gaps = 31/218 (14%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             F   D ET G       +  +   V+  +  E ++S               P    +T
Sbjct: 81  QTFCFVDIETNGGTPKKGFQIIELGAVKY-KNGEVLDSFNSLVFA----KEIPPYIQEVT 135

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITP        +E    + +  F       +   ++I+FD  +  + F +         
Sbjct: 136 KITPAMLETAPRIE----KVLKDFKEFLGDDVFIAHDIKFDYNFISDSFEKY-------- 183

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L  +      + D  +   + +    + L  L     I+  N H A  D 
Sbjct: 184 ---------SLGKLLNRKLCTIDLAKRTIKSEK---YGLSSLKELLNIDIENHHRAYYDA 231

Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
             T  +    ++       + + D  N ++   +I  +
Sbjct: 232 LTTQIVFEKCLKNIDTNKIKTVEDLINFSKSDSIIKNE 269


>gi|212712065|ref|ZP_03320193.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM
           30120]
 gi|212685587|gb|EEB45115.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM
           30120]
          Length = 214

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 64/200 (32%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D+     I+ T  F  +P +    +P A+  TG
Sbjct: 20  VVIDVETGGFNPKTDGLLEIAAITLKMDKDGWLAIDETLHFHVEPFEGANLEPSALEFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  I+  +N  FD  +  N   R+   
Sbjct: 80  IDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            I             L    +  GI      A
Sbjct: 140 ------RNPFHPFATFDTAALSGLVFGQTI-------------LAKACVTAGIPFDGKQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  K
Sbjct: 181 HGALYDTNRTALLFCELVNK 200


>gi|241662069|ref|YP_002980429.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D]
 gi|240864096|gb|ACS61757.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12D]
          Length = 216

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 50/183 (27%), Gaps = 14/183 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G +V  D       VR+               +P  +    PE++ +  +  
Sbjct: 39  VALDCETTGLNVRTDEIVSIGAVRIVGNRILTSERMELLIRPQGEMR--PESICVHRLRN 96

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +     GV   +    +  F    +  ++GY         +R +         +   +  
Sbjct: 97  RDL-DSGVSIEQAIHALLHFI--GSRPLVGYYLEFDVAMLNRVVVSMLGIGLPQPKIEVS 153

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +D                 +  + D     +   +     +   +AHDA  D     
Sbjct: 154 ALYYD---------YRFQQLPPYRQQGDPDLDLRFATVMKELDLPTWDAHDALNDAVMAA 204

Query: 186 ALV 188
              
Sbjct: 205 LAF 207


>gi|119944727|ref|YP_942407.1| DNA polymerase III subunit epsilon [Psychromonas ingrahamii 37]
 gi|119863331|gb|ABM02808.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas
           ingrahamii 37]
          Length = 238

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 12/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G D   +       V  + Q       + ++  P D+      ++ I GIT
Sbjct: 48  FVALDFETTGLDSQQNGIISIGLVPFNLQRIFCRKVKEWYINPQDNL--QENSIIIHGIT 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +  R + Q        ++  +  R +  +  +       +        
Sbjct: 106 HSDLQDAP----DILRILEQLLDELAGKVVVVHYRRIERDFLDHTLRILIDEGIL----- 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + +   +      G+          S +L D      +     HDA  D  AT
Sbjct: 157 -FPVIDTMQIEANLQRRKSQGLFNFFNKKRPESIRLADSRARYNLPVYPPHDALTDAIAT 215

Query: 185 LALVWLIREKK 195
             L+    +  
Sbjct: 216 AELLQAQIKYH 226


>gi|294811599|ref|ZP_06770242.1| Putative DNA polymerase III epsilon subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324198|gb|EFG05841.1| Putative DNA polymerase III epsilon subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 287

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 7/109 (6%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  D          +            P A  + G+T   
Sbjct: 58  FDTETTGVDVENDRIVAAAVVVQDMAG---GRPRITRWLINPGIPVPPGATEVHGLTDDH 114

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRN 113
             R+G   A     + +  +        ++  N   FD         R+
Sbjct: 115 VQRNGRWPAPVLEEVAKTVAGHCAAGRPLVVMNAP-FDLTILDRELRRH 162


>gi|254391300|ref|ZP_05006504.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440213|ref|ZP_08214947.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|197704991|gb|EDY50803.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 241

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 7/109 (6%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  D          +            P A  + G+T   
Sbjct: 12  FDTETTGVDVENDRIVAAAVVVQDMAG---GRPRITRWLINPGIPVPPGATEVHGLTDDH 68

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRN 113
             R+G   A     + +  +        ++  N   FD         R+
Sbjct: 69  VQRNGRWPAPVLEEVAKTVAGHCAAGRPLVVMNAP-FDLTILDRELRRH 116


>gi|86136750|ref|ZP_01055328.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193]
 gi|85826074|gb|EAQ46271.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193]
          Length = 243

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 56/211 (26%), Gaps = 34/211 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V        + + E F      +     EA  + GI 
Sbjct: 4   IVLDTETTGFDPFSGDRIVEIGAV---ELLNHMPTGETFHVYINPERSMPQEAFGVHGIG 60

Query: 65  PQKALRDGVVE---------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           P         E           F++    F        +  +N  FD  +      R   
Sbjct: 61  PDLLEPPQKPEKGQVTLRDKPVFAKFGQAFLDFVRDSRMVIHNASFDMKFLNFELDRMGL 120

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174
            +            D L + R  +  SP                L  L     I++ N  
Sbjct: 121 RTLPMEQA-----LDTLAMARKRFPGSPAT--------------LDALCRRFQIDNSNRT 161

Query: 175 -HDAKADVYATLALVWLIREKKPKLFEYLYD 204
            H A  D      +   +   +   F    +
Sbjct: 162 LHGALLDSEILADVYLELSGGRQPDFGLSTN 192


>gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
 gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
          Length = 229

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 60/199 (30%), Gaps = 26/199 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  + A +       K+ +   F      +     +A  I GI+
Sbjct: 7   IILDTETTGLDPRQGHRIVEIAAI---EMMNKVLTGRNFHFYINPERDIPFDAYRIHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +     +    +F +      +  +N  FD  +  +    +           
Sbjct: 64  GEFLKDKPLFHT-IADDFLEFIADSK---LVIHNAPFDIKFLNHEL--SLLKRAEIKLLE 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
            ++  D L + R+++                + + L  L     +++     H A  D  
Sbjct: 118 LSNAIDTLVMARSMFPG--------------SKYNLDALCKRFKVDNSGRQLHGALKDAA 163

Query: 183 ATLALVWLIREKKPKLFEY 201
               +   +   +   F+ 
Sbjct: 164 LLAEVYVELTGGRQSSFKM 182


>gi|316985472|gb|EFV64419.1| exonuclease family protein [Neisseria meningitidis H44/76]
 gi|325139523|gb|EGC62063.1| oligoribonuclease [Neisseria meningitidis CU385]
 gi|325143758|gb|EGC66075.1| oligoribonuclease [Neisseria meningitidis M01-240013]
          Length = 203

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +DD L   D     
Sbjct: 20  KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDDVLNKMDEWNTA 79

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 80  THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 139

Query: 115 YDSYRW 120
              +  
Sbjct: 140 NYFHYR 145


>gi|154247607|ref|YP_001418565.1| exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
 gi|154161692|gb|ABS68908.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
          Length = 200

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 18/205 (8%)

Query: 5   FVIYDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA--DDYLPD 54
            + +D ET G           A     Q A    +     I     F   P   D     
Sbjct: 2   ILFWDTETTGFFDDRLPVDHKAQPYIVQLAAQLCEDDGRPIAGF-SFIIDPGIGDGINIP 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             A  + GIT ++A++ GV            +   +  ++  +N +FD   +     R+ 
Sbjct: 61  ERAAAVHGITNERAVQFGVSTEFALSAFTHLYQRAD--MVCAHNAKFDKGVTETAISRH- 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVN 173
              Y          +  ++    I    P      +  +     KL++ +    G +   
Sbjct: 118 ---YGRVMPLRKPVFCTMESATPIINLPPTDRMRAAGFNKPKPPKLEECIRHFFGEDLDG 174

Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
           AHDA  DV A   + + ++  +   
Sbjct: 175 AHDAMVDVAACRRVYFHLKSMEADN 199


>gi|157151695|ref|YP_001450717.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157076489|gb|ABV11172.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 824

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/383 (13%), Positives = 108/383 (28%), Gaps = 39/383 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + I D E  G   +  +  Q   V +    E  E+ +            +     +TG+
Sbjct: 7   KYAIVDLEATGTG-STAKIIQVGIVIL-EDGEIKETYQT---DINPHEALEEHIKQLTGL 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + Q+  +     ++ +R I++        +   +N++FD        +   +D       
Sbjct: 62  SDQRLSQAP-DFSQVAREIYELIED---AVFVAHNVKFDANLLAESLFWEGFDLLS---- 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R D +++ + ++                  + L  L     I    AH A +D  A
Sbjct: 114 ---PRVDTVELAQVVFPTYE-------------KYGLSSLCELLEIPLEQAHTAISDAMA 157

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L   I+EK   L + L +      L   +  ++   L          R+   L    
Sbjct: 158 TALLFLKIQEKIQSLPKPLLERLL--VLSDSLIYESRLVLEDCFEKMPDGRAGDWLDCHG 215

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
            +  +         LS D      L  ++           ++  +  P+        P  
Sbjct: 216 IYLKKQAKLGKERCLSSDFAKNISLLGLEERPEQQKFASLIEEAMKNPL--------PNF 267

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
           +       + +         C E + +      L+D+      +      Q     L   
Sbjct: 268 LQAQAGLGKTYGYLLPLLAHCQEKIVVSVPTKILQDQIATGEGRAIEEVFQVAFHSLKSP 327

Query: 364 FFADVDRQIMDRILRTAPEQLST 386
                       + R    +L  
Sbjct: 328 KSYIKLDAFYQSLERLDDNRLLN 350


>gi|323497526|ref|ZP_08102544.1| putative exonuclease [Vibrio sinaloensis DSM 21326]
 gi|323317609|gb|EGA70602.1| putative exonuclease [Vibrio sinaloensis DSM 21326]
          Length = 238

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 57/184 (30%), Gaps = 19/184 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++ D ET G D   D       V +      I+ +       +++    PE   I  IT
Sbjct: 51  YLVLDLETTGLDAESDLILSMGWVEISNG--VIDLSTAQHFYLSNESQIKPETAVINHIT 108

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ     G+   +     +  F V    ++  ++   ++ + +              + +
Sbjct: 109 PQMLED-GISIHDAM---NALFEVAQGKVLVAHSCSVENSFIQR-------------YLS 151

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              + + + +M          +     +       L        +     H+A  D  AT
Sbjct: 152 YRFQINAVPLMWLDTLCIEKKLARAINNHQDLDVSLGATRERYQLPEYIEHNALMDAVAT 211

Query: 185 LALV 188
             L+
Sbjct: 212 AELL 215


>gi|225024402|ref|ZP_03713594.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC
           23834]
 gi|224942783|gb|EEG23992.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC
           23834]
          Length = 240

 Score = 72.9 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 27/193 (13%)

Query: 6   VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G     D R  +FAG+ +        +    +  P  D     EA  + GIT
Sbjct: 7   IILDTETTGFYYDRDDRLIEFAGLEM-IDRRLTGNYLHLYVHPERD--IPEEAAKVHGIT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +        AE  ++I  F +   T ++ +N   FD  +    F R    S       
Sbjct: 64  LDQLEGKPK-FAEIGQQIADFIA--GTELVIHNAP-FDVGFLNAEFRRAGLPSVEE---L 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
             +  D L + RA+Y    +               L  L     ++      H A  D  
Sbjct: 117 TANVVDTLVMARAMYPGQKN--------------SLDALCTRLEVDRSKRVFHGALIDCE 162

Query: 183 ATLALVWLIREKK 195
               +   +   +
Sbjct: 163 LLSEVYLGMTRSQ 175


>gi|322411431|gb|EFY02339.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 820

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 104/336 (30%), Gaps = 38/336 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT  + + D E      A     Q   V ++ + E +E+ +                  +
Sbjct: 5   MTRKYAVVDLEATNAG-ATAAIIQVGIVIIEGK-EVVETYQT---DINPHEPLSDHIKDL 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  +  +     ++ ++ I++  S    C+   +N++FD        +   Y+    
Sbjct: 60  TGITDAQLAQAPE-FSQVAKTIYELISD---CVFVAHNVKFDANLLAEALFFEGYELLT- 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R D +++ +  Y                  + L  L+   G+E   AH A AD
Sbjct: 115 ------PRVDTVELAQIFY-------------PSLEKYTLGHLSAELGLELEEAHTAIAD 155

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
             AT AL   + +K   L +   +         L +   +             R+   L 
Sbjct: 156 ARATAALFIKLLQKIDSLPKECLESLLPYADSLLFETAMVIEQGFNQAKSYDPRTYVHLG 215

Query: 241 APVAW-HPRYK--------DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291
             +   HP+ +           I   L G     +     QL +  +             
Sbjct: 216 KMLLPKHPKGQSSPYQLSKQFAINMALLGLEERSKQARFAQLIEADYHQRQASFIEAQTG 275

Query: 292 IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLEN 327
           I + +    P+L   D+ +        I   + + N
Sbjct: 276 IGKTYGYLLPLLAQEDHNQIIVSVPTKILQDQLMAN 311


>gi|315650464|ref|ZP_07903534.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Eubacterium saburreum DSM 3986]
 gi|315487260|gb|EFU77572.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Eubacterium saburreum DSM 3986]
          Length = 299

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 27/197 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  FVI D ET G D   +   +   ++       +   +       +  LP    V +T
Sbjct: 127 SKDFVIVDIETDGLDNEKNVIIEVGAIKSVSG--VLSEFQSLVNY--EGTLP-KHIVSLT 181

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT     +DG       +    F    +  IIGYN   FD  +      ++  ++    
Sbjct: 182 GITTDMLKKDGSDIVVVLKDFVDFLGDLD--IIGYNIG-FDIDFINIALLKSGLENL--- 235

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               N R+DL+  ++    F  +             +KLQ +    G+     H A  D 
Sbjct: 236 ---NNKRYDLMRFVKNEKLFLEN-------------YKLQTVIKEYGVGDKVPHRALEDA 279

Query: 182 YATLALVWLIREKKPKL 198
                L   + + +   
Sbjct: 280 KMIYKLAMKVNKFRDLY 296


>gi|157737104|ref|YP_001489787.1| DNA polymerase III subunit epsilon [Arcobacter butzleri RM4018]
 gi|157698958|gb|ABV67118.1| DNA polymerase III [Arcobacter butzleri RM4018]
          Length = 272

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 65/218 (29%), Gaps = 31/218 (14%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             F   D ET G       +  +   V+  +  E ++S               P    +T
Sbjct: 81  QTFCFVDIETNGGTPKKGFQIIELGAVKY-KNGEVLDSFNSLVFA----KEIPPYIQEVT 135

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITP        +E    + +  F       +   ++I+FD  +  + F +         
Sbjct: 136 KITPAMLETAPRIE----KVLKDFKEFLGDDVFIAHDIKFDYNFISDSFEKY-------- 183

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L  +      + D  +   + +    + L  L     I+  N H A  D 
Sbjct: 184 ---------SLGKLLNRKLCTIDLAKRTIKSEK---YGLSSLKELLNIDIENHHRAYYDA 231

Query: 182 YATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
             T  +    ++       + + D  N ++   +I  +
Sbjct: 232 LTTQIVFEKCLKNIDTNKIKTVEDLINFSKSDSIIKNE 269


>gi|296114717|ref|ZP_06833368.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978751|gb|EFG85478.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC
           23769]
          Length = 298

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 61/187 (32%), Gaps = 37/187 (19%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK--IESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D ET G D   D   + A V        E   I +      KPA       E   +T
Sbjct: 42  ILVDVETTGLDCEKDEIIELAMVPFFYTHFGEIVGIGAPFEGLRKPA--KPISSEVTKLT 99

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI         +   E +       +   T ++  +N  FD  +     +          
Sbjct: 100 GIDNAMVEGKAINPDEVA-------AFAGTSLVVAHNAAFDRRFLERFCH---------- 142

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                          A   ++    +    D+G  S KL  LA+++G  +   H A  D 
Sbjct: 143 -------------AFAGNPWACSMSEVKWFDEGFESSKLALLAMSSGFYYDK-HRAVHDC 188

Query: 182 YATLALV 188
           YATL L+
Sbjct: 189 YATLELL 195


>gi|268679559|ref|YP_003303990.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617590|gb|ACZ11955.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 246

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 82/269 (30%), Gaps = 29/269 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              ++++D ET G +   DR  Q   + VD + +  E  +              EA+ + 
Sbjct: 1   MAKYILFDTETTGNN-EEDRIIQIGAMIVDAKGQV-EVFDELCSTVLP---IKVEAMAVH 55

Query: 62  GITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           GITP      G+  +  F + +    +  N   +  +N+ FD    +   +         
Sbjct: 56  GITPNLIEGKGLFTDTNFYKTLLSLNNQEN--YLIAHNMPFDMGMLQKEGFIPDLKIIDT 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                +   +          +  +  +    +    +              + AHDA  D
Sbjct: 114 LRVAKHLIPNSPSKALQYLRYDLELYKNEQAEADKYNI------------TIKAHDAIGD 161

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           V     L+  +     + +           +  +I ++ +T        F   +     I
Sbjct: 162 VLVMKLLLSKLVVLVKENYP---------DVNPMIKMEELTSTPIFIETFTFGKYKDRKI 212

Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLD 269
           A V        + +  N+  D  +   LD
Sbjct: 213 AEVCNEDMGYINWMKKNMDLDEDMKYTLD 241


>gi|21224413|ref|NP_630192.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|13276811|emb|CAC33929.1| putative DNA polymerase [Streptomyces coelicolor A3(2)]
          Length = 244

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 6/111 (5%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R      V   R  E +   E              +AV + GI+ ++
Sbjct: 11  FDLETTGTDPREARIVT-GAVIEVRGSEPLGRREWLA---DPGVEIPADAVAVHGISNER 66

Query: 68  ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A R+G    + +  I             +   N  FD         R+   
Sbjct: 67  AAREGRPADQVADAIATVLVDHWKAGVPVVAYNAAFDLTLLAAELRRHALP 117


>gi|317178251|dbj|BAJ56040.1| DNA polymerase III subunit epsilon [Helicobacter pylori F16]
          Length = 287

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFSIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141]
          Length = 307

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 61/196 (31%), Gaps = 30/196 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  +V  D ET   +           V+  +    +++          +   D   +FI
Sbjct: 1   MSYSYVALDVET--ANDFRGSVCSIGLVKF-KDGNIVDTFYTL---INPEEEFDDFNIFI 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GITP+  L       E  + I  F       I+  +  +FD                  
Sbjct: 55  HGITPEDVLDSP-TFPEVRKSIVDFI---GLDIVVAHFAQFDMGA---------LKDVYQ 101

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            ++      + +   R                 G  ++KL+ LA    IE  + H+A +D
Sbjct: 102 KYELDFDNIEYICSYRLAKV----------ALPGQLNYKLKRLAKNLNIELDH-HNALSD 150

Query: 181 VYATLALVWLIREKKP 196
             A+  ++  +     
Sbjct: 151 ARASGLILEYLLSTNS 166


>gi|154251704|ref|YP_001412528.1| DNA polymerase III subunit epsilon [Parvibaculum lavamentivorans
           DS-1]
 gi|154155654|gb|ABS62871.1| DNA polymerase III, epsilon subunit [Parvibaculum lavamentivorans
           DS-1]
          Length = 228

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 50/195 (25%), Gaps = 29/195 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G       R  +   + +            F      +      A  I G++
Sbjct: 4   IVLDTETTGISPNDGHRLVEIGCLEL-FNHVVTGKY--FHAYIDPERDMPEGAFRIHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                      AE +     F        +  +N  FD  +      R    +   S   
Sbjct: 61  SDFLRGKPK-FAEVADDFLAFI---GEDPLVIHNAAFDMGFINAELKRIGRPALPVSRAT 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D LD+ R  +  + +               L  L    G+++     H A  D  
Sbjct: 117 -----DTLDIARRKFPGAQN--------------SLDALCRRFGVDNSGRTKHGALLDSE 157

Query: 183 ATLALVWLIREKKPK 197
               +   +   +  
Sbjct: 158 LLAEVYLELMGGRQP 172


>gi|183599959|ref|ZP_02961452.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827]
 gi|188022234|gb|EDU60274.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827]
          Length = 234

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 56/209 (26%), Gaps = 24/209 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T   +  D ET G D   DR      V      + +  +   +    D+     E   I 
Sbjct: 49  TQQILSIDLETTGLDPEKDRILSIGMV-TIADSKILLKSAQHY-YVNDNEPVKAETAVIN 106

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITP++    GV        I  F        I  +    +  +                
Sbjct: 107 HITPEQLSD-GVSLPHA---IASFLHEAKGKCILAHGSAIEHAFLSKALNIKELPLLW-- 160

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +D L++         +      ++     F L  L     +   +AH+A +D 
Sbjct: 161 -------FDTLNI---------EKTLLSHKNINRNDFSLSALRSRYQLPDYDAHNALSDA 204

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            AT  L     +        +     K  
Sbjct: 205 IATAELFLAQSKVIYPSQHPVIKQLYKRS 233


>gi|297191229|ref|ZP_06908627.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297150828|gb|EDY62400.2| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 259

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 41/138 (29%), Gaps = 7/138 (5%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A V   R  E + S                +A  I GI+ ++
Sbjct: 30  FDLETTGTDPLDARIVT-AAVVELRAGEPVRSH---GWMADPGISIPAQASAIHGISNER 85

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G    E +  I    +        +   N  FD         R+   S      +G
Sbjct: 86  ASAEGRPAREVAEEIADTLTAHWRQGVPVVAYNAAFDLTLLAAELQRHGLPSLG-ERLDG 144

Query: 126 NSRWDLLDVMRAIYAFSP 143
                ++D      A   
Sbjct: 145 RPIGPVIDPYTIDRAVDR 162


>gi|62390951|ref|YP_226353.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326290|emb|CAF20452.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease
           [Corynebacterium glutamicum ATCC 13032]
          Length = 476

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 28/174 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62
           +FV +D ET   +       Q   V+        ES+E + C P +      E  + I G
Sbjct: 123 NFVGFDVET--ANDDWGSICQIGLVKYVDG--VEESSESWLCTPPESLNFFNEINIGIHG 178

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITP+           F+  + +         +  +N +FD          +  D     +
Sbjct: 179 ITPEMVADQPR----FADLVPKMVEFVGDLPLVAHNAQFDFTALSRACAASGIDVPEMIY 234

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                    L + R                    + KL  +A   G E  N HD
Sbjct: 235 ------GCSLTLARNEKL-------------QVENHKLPTVASHLGFELKNHHD 269


>gi|23308895|ref|NP_601316.2| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC
           13032]
 gi|21324886|dbj|BAB99509.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Corynebacterium glutamicum ATCC 13032]
          Length = 381

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 28/174 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62
           +FV +D ET   +       Q   V+        ES+E + C P +      E  + I G
Sbjct: 28  NFVGFDVET--ANDDWGSICQIGLVKYVDG--VEESSESWLCTPPESLNFFNEINIGIHG 83

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITP+           F+  + +         +  +N +FD          +  D     +
Sbjct: 84  ITPEMVADQPR----FADLVPKMVEFVGDLPLVAHNAQFDFTALSRACAASGIDVPEMIY 139

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                    L + R                    + KL  +A   G E  N HD
Sbjct: 140 ------GCSLTLARNEKL-------------QVENHKLPTVASHLGFELKNHHD 174


>gi|194367724|ref|YP_002030334.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           R551-3]
 gi|194350528|gb|ACF53651.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 169

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 26/193 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            +  V  D ET G    L  R  +   V +    +       F          D  A  +
Sbjct: 1   MSRIVALDTETTGISHRLGHRVIEIGAVEL-IDGQLTGRQ--FHTYLQPQRKVDWGAQRV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+    +   +  ++ +  +  F        +  +N  FD  +  N            
Sbjct: 58  HGISDAMLVGKPLFSSKAA-ELLDFLRGSE---MVAHNATFDVGFLDNELRLAGIPGTLA 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                          R   +      +WP +       KL D+     I  +   H A  
Sbjct: 114 QH------------CRITCSLKLARGRWPGQG-----NKLDDVLQRLRIPGNRGLHGALK 156

Query: 180 DVYATLALVWLIR 192
           D +    ++  +R
Sbjct: 157 DAHLLAQVIPHLR 169


>gi|322372929|ref|ZP_08047465.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150]
 gi|321277971|gb|EFX55040.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150]
          Length = 301

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 27/196 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V+ D ET G D   +   +   V+     +++E          ++ LP      +TG
Sbjct: 129 KPYVVIDIETDGLDEKKNTIIEIGAVKF--NGQQVEEFNSLIKY--EEKLPTA-ISKLTG 183

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+     ++G    E       F        +   NI FD  +  N   +          
Sbjct: 184 ISKSLLDQEGRDLEEVLSEFLLFI---GKLTLVGYNIHFDIQFINNKLNKFGLPILIN-- 238

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D++  ++    F  +             ++LQ    A GIE    H A  D  
Sbjct: 239 ----KTHDIMRYVKDEKLFLDN-------------YQLQTALKAYGIEDQVPHRALKDAR 281

Query: 183 ATLALVWLIREKKPKL 198
               L   + +   ++
Sbjct: 282 LIYHLSTKVNKFLARM 297


>gi|269977856|ref|ZP_06184812.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|306818377|ref|ZP_07452103.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307701469|ref|ZP_07638488.1| exonuclease [Mobiluncus mulieris FB024-16]
 gi|269933936|gb|EEZ90514.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|304648886|gb|EFM46185.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307613379|gb|EFN92629.1| exonuclease [Mobiluncus mulieris FB024-16]
          Length = 258

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 72/236 (30%), Gaps = 24/236 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G  V  DR A  + +R             +            +A  + G+T + 
Sbjct: 37  FDTETTGVWVRRDRIATASLIR-----RVGGEDTAYNWVINPGVPMPVKASEVNGLTDEY 91

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             + G   A     I    +    +   +   N+ FD         R    + R     G
Sbjct: 92  LEKHGEQPAVALAEIASELAAAMSSGVPVVGFNVAFDFEILEAELARYELPTLRA--RLG 149

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYAT 184
                ++D +                       KL  +  A G++   A H A +DV AT
Sbjct: 150 GRIAPVIDPLVLDRTL---------DRYRRGKRKLATVCEAYGLDGNRAFHQADSDVTAT 200

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           L L+  + E+   L          ++L       + T   + +     +R +   +
Sbjct: 201 LDLLGAMVERYESLRGMEL-----DELHDFQAAAHRTWAENFNEYMARTRPDYRPV 251


>gi|121997071|ref|YP_001001858.1| DNA polymerase III subunit epsilon [Halorhodospira halophila SL1]
 gi|121588476|gb|ABM61056.1| DNA polymerase III, epsilon subunit [Halorhodospira halophila SL1]
          Length = 243

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 56/196 (28%), Gaps = 28/196 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G D     R  +   V  V R+     +   F      D   D  A  + G+
Sbjct: 4   ILLDTETTGMDPTEGHRIIEIGCVELVRRRL----TGNNFHEYLNPDRAVDEGAENVHGL 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +         A+ +RR   +       I   +N  FD  +      R          +
Sbjct: 60  SNRFLADKPR-FADIARRFVDYVQDAELII---HNAPFDVGFIDAELARLG--PAWGQLE 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADV 181
           +  +  D L + R ++                    L  L     ++      H A  D 
Sbjct: 114 DYCTITDSLQMARRMHPGQRC--------------SLDALCKRYSVDGSRRELHGALLDS 159

Query: 182 YATLALVWLIREKKPK 197
                +   +   + K
Sbjct: 160 ELLAEVYLAMTGGQGK 175


>gi|317505660|ref|ZP_07963563.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606]
 gi|315663245|gb|EFV03009.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606]
          Length = 901

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 84/263 (31%), Gaps = 19/263 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
             I+D ET G DV  D   Q A V++      + S    + + +D  +P+     +  I 
Sbjct: 507 ITIFDTETTGLDVFSDDILQIAAVQLKNGAVVLGSAMSIYLE-SDKEIPEMLGDIVNPII 565

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++     +   +  +R   +       ++  +N  FD +   N   R   +       N
Sbjct: 566 EERRHHQLISRQDALQRFVDY---AQGTVLLGHNADFDIHILTNNLLRELPECPLPENLN 622

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                           +    +       G   +KL+ L     +E  N+H A ADV AT
Sbjct: 623 N---------------YLDSLLLIRLLRPGLRQYKLKYLLEVLHLEGENSHLADADVNAT 667

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            AL     +   ++      +    ++++ +       L H         +N      + 
Sbjct: 668 RALTIFCYDHAREMVAEQQSFITHKRVQERVVTLRNNYLSHFYHTADCLWTNDDNKDLLV 727

Query: 245 WHPRYKDSVIGCNLSGDMRVFQD 267
              RY  S+       +     +
Sbjct: 728 EEMRYLYSIWVEEHLIEPLPMVE 750


>gi|292670219|ref|ZP_06603645.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648171|gb|EFF66143.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 179

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    +++D ET G     D     A   VD     +        +        P+A  I
Sbjct: 1   MLEKILVFDTETTGFRSD-DEVLTLA--VVDGAGATVVDGMYAPVRKNAW----PDAEKI 53

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I+P   +    + A+ +  + + F+ P T ++GYN        +++          R 
Sbjct: 54  NRISPAMVVNCPPILAQQA-ELERMFNDPETLLVGYNIEFDIRLLAQSG--------IRI 104

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              N +         R +      G +W    + A  ++              AH A AD
Sbjct: 105 QNPNRHDVMLAFSEFRKVPDARRGGYRWWKLAECADYYR-------YDWGTTKAHGALAD 157

Query: 181 VYATLALVWLIRE 193
             ATL     ++E
Sbjct: 158 TLATLFCYQKMKE 170


>gi|325205739|gb|ADZ01192.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M04-240196]
          Length = 244

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT   +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|254670687|emb|CBA06809.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha153]
          Length = 244

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT   +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|218768496|ref|YP_002343008.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
 gi|254805280|ref|YP_003083501.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha14]
 gi|121052504|emb|CAM08843.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
 gi|254668822|emb|CBA06831.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha14]
 gi|319410744|emb|CBY91127.1| DNA polymerase III epsilon subunit [Neisseria meningitidis WUE
           2594]
 gi|325127153|gb|EGC50103.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568]
          Length = 244

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT   +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|212636083|ref|YP_002312608.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3]
 gi|212557567|gb|ACJ30021.1| Exonuclease [Shewanella piezotolerans WP3]
          Length = 238

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G D   +       V       +I   +        +     +++ I GIT
Sbjct: 48  FVALDFETTGLDANENSIISIGLVPF--TLRRIACRQAKHWFITPEDKLKEDSIIIHGIT 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +  R + Q        I+  +  R +         R+F+D+   S  N
Sbjct: 106 HSDLKGAP----DLLRILEQLLDELAGKIVVVHYRRIE---------RDFFDAALRSLIN 152

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQW---PSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               + ++D M+          +      +     S +L +      +     HDA  D 
Sbjct: 153 EGIVFPVVDTMQIEADIQQAKPKRFLDWFKKSRPESIRLANSRTRYNLPTYPPHDALTDA 212

Query: 182 YATLALVWLIREKK 195
            AT  L+       
Sbjct: 213 IATAELLQAQIYHH 226


>gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain
           CL Brener]
 gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           cruzi]
          Length = 1417

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 60/199 (30%), Gaps = 30/199 (15%)

Query: 2   TNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
              +  V++D E+ G + A D   + A    D           F      +     E + 
Sbjct: 770 MRTYRLVVFDIESTGLNTATDAIIEIAA--WDP-----VEATSFSSLVDPERSIPQETMA 822

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFY 111
           I  IT            E +R + ++  +            +IG+N    D+   R  F 
Sbjct: 823 IHHITDGMVRGAPR-LPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFE 881

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALA 166
           R           +     D L +++A+        + P  D G      TS +L  L   
Sbjct: 882 REGVCM------DNILFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEG 935

Query: 167 NGIEHVN-AHDAKADVYAT 184
             +E     H A  D    
Sbjct: 936 LHVEADGLLHRADTDAKTL 954


>gi|229525881|ref|ZP_04415286.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|229339462|gb|EEO04479.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
          Length = 236

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 55/194 (28%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V      ++I  ++  +         + E++   GI
Sbjct: 46  SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEDESIVFHGI 103

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T          E    + + +     +  I+  +    +  + R            W   
Sbjct: 104 THSDLQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 153

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q  +R     S +L    +   +   + H A  D  A
Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQRIARRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 212

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 213 TAELFQAQCAHHLP 226


>gi|239939981|ref|ZP_04691918.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|239986465|ref|ZP_04707129.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443411|ref|ZP_06582801.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346358|gb|EFE73262.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 241

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 35/120 (29%), Gaps = 11/120 (9%)

Query: 1   MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M + F      +D ET G DV  DR    A V  D          V            P 
Sbjct: 1   MMHWFEGPLAAFDTETTGVDVERDRIVSAALVAQDTAG---GRVRVTRWLVNPGIPVPPG 57

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
           A  I G+      R+G   A     I +  +        ++  N   FD         R+
Sbjct: 58  ATEIHGLADDHLQRNGRWPAPVMDEIARALAESCATGRPLVVMNAP-FDLTLLDRELKRH 116


>gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
           cruzi]
          Length = 1404

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 60/199 (30%), Gaps = 30/199 (15%)

Query: 2   TNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
              +  V++D E+ G + A D   + A    D           F      +     E + 
Sbjct: 757 MRTYRLVVFDIESTGLNTATDAIIEIAA--WDP-----VEATSFSSLVDPERAIPQETMA 809

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFY 111
           I  IT            E +R + ++  +            +IG+N    D+   R  F 
Sbjct: 810 IHHITDGMVRGAPR-LPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFE 868

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALA 166
           R           +     D L +++A+        + P  D G      TS +L  L   
Sbjct: 869 REGVCM------DNILFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEG 922

Query: 167 NGIEHVN-AHDAKADVYAT 184
             +E     H A  D    
Sbjct: 923 LHVEADGLLHRADTDAKTL 941


>gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1473

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 60/199 (30%), Gaps = 30/199 (15%)

Query: 2    TNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
               +  V++D E+ G + A D   + A    D           F      +     E + 
Sbjct: 826  MRTYRLVVFDIESTGLNTATDAIIEIAA--WDP-----VEATSFSSLVDPERAIPQETMA 878

Query: 60   ITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYYSRNIFY 111
            I  IT            E +R + ++  +            +IG+N    D+   R  F 
Sbjct: 879  IHHITDGMVRGAPR-LPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFE 937

Query: 112  RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALA 166
            R           +     D L +++A+        + P  D G      TS +L  L   
Sbjct: 938  REGVCM------DNILFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEG 991

Query: 167  NGIEHVN-AHDAKADVYAT 184
              +E     H A  D    
Sbjct: 992  LHVEADGLLHRADTDAKTL 1010


>gi|323360067|ref|YP_004226463.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
 gi|323276438|dbj|BAJ76583.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
          Length = 224

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 21/200 (10%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           ++D ET G DV  DR        +D     I++ +               A  I GIT +
Sbjct: 3   VFDLETTGVDVVNDRIVTAHVGVLDADGHVIDARDWLA---DPGVDIPDGAAAIHGITSE 59

Query: 67  KALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           +A  DG         + +  S        +   N  FD    ++   R+           
Sbjct: 60  RARADGAPAPRVVAEVVEALSALFAAGIPVVAYNAPFDFSMLKHEAVRHGVAPIEAPSP- 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                             P  +             L  +A    +   +AH+A AD  A 
Sbjct: 119 ---------------VIDPLVVDKTYDRYRRGKRTLSVVAEHYAVPLESAHEACADAVAA 163

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L   + ++         +
Sbjct: 164 GRLALALADRFAPWLPATLE 183


>gi|213021700|ref|ZP_03336147.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213612768|ref|ZP_03370594.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 164

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 14/140 (10%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 12  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +  L   V    F+  + +F        +  +N  FD  +    F     D  + 
Sbjct: 69  HGIADEFLLDKPV----FADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKT 124

Query: 121 SWDNGNSRWDLLDVMRAIYA 140
           +        D L + R ++ 
Sbjct: 125 N--TFCKVTDSLALARKMFP 142


>gi|328943837|ref|ZP_08241302.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Atopobium vaginae DSM 15829]
 gi|327491806|gb|EGF23580.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Atopobium vaginae DSM 15829]
          Length = 337

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 26/191 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FVI D ET G +   D+  +   +R+    ++++  +    +  D     P    +TG
Sbjct: 168 KKFVILDIETSGLNETDDKIIEIGAIRICD--KQVDDYQCLIKR--DSLNLSPAITQLTG 223

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T  +    GV        + QF        +   NI FD  +  N              
Sbjct: 224 LTDIELANRGVNPNLALNGLKQFI---GHLPVLGYNIAFDMRFINNELRSM------NEE 274

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N   D++  ++    F               S+ L ++    GI     H A  D  
Sbjct: 275 LLDNREIDVMRFIKKEKMFLE-------------SYALDNVLKVYGISATVPHRALGDAK 321

Query: 183 ATLALVWLIRE 193
               L   + +
Sbjct: 322 LIAKLALKVNK 332


>gi|261856413|ref|YP_003263696.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
           c2]
 gi|261836882|gb|ACX96649.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
           c2]
          Length = 237

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 64/240 (26%), Gaps = 30/240 (12%)

Query: 1   MTNHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           MT   ++ D ET G   A D  R  +   V +            F C    + L D  A 
Sbjct: 1   MTERQIVLDTETTGM-PAADGHRLVEIGAVEMIE-RRVTGK--TFHCYLNPERLVDEGAF 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + G++             F+  + +F +      +  +N  FD  +      R      
Sbjct: 57  NVHGLSDAFLADKPK----FADVVDEFLAFIAGAELIIHNAEFDVGFLDAELARL----- 107

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                NG    D+   +    A +                 L  L     I++     H 
Sbjct: 108 ----ANGGRLADVAGSVTDSLAIARKKH-------PGQRNSLDALCRRYSIDNSARTLHG 156

Query: 177 AKADVYATLALVWLIREKKPKLFEY--LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           A  D      +   +   +  L             Q   +I +    P + V       R
Sbjct: 157 ALLDSEILADVYLALTGGQKTLGFDSEHGQGDEHKQAASIIRLPADRPPLRVITANEEER 216


>gi|297559294|ref|YP_003678268.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843742|gb|ADH65762.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 243

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 50/167 (29%), Gaps = 20/167 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D E+ G D+A DR    A  R+D      E   V             EA  I  IT + 
Sbjct: 21  FDTESTGLDLANDRIVTAALWRIDPAARTKE---VTTWLIDPGIDIPQEATDIHHITTEH 77

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A   G   AE    I         +   +   N  +D         R+          + 
Sbjct: 78  AREHGRPAAEAVPEIGAALEKAAADGVPVVVYNAPYDLGLLSAELRRH----------DA 127

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
            +R+D       +    P  I          S KL D+   +G+   
Sbjct: 128 GARFDG-----TLRVLDPLVIDKRFDTFRRGSRKLVDVCAHHGVRLD 169


>gi|15641303|ref|NP_230935.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586529|ref|ZP_01676315.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121728837|ref|ZP_01681848.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|147673833|ref|YP_001216855.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153801317|ref|ZP_01955903.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|153819755|ref|ZP_01972422.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|153823215|ref|ZP_01975882.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|227081461|ref|YP_002810012.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|229505123|ref|ZP_04394633.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229511206|ref|ZP_04400685.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229518325|ref|ZP_04407769.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229608142|ref|YP_002878790.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254848414|ref|ZP_05237764.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|298498618|ref|ZP_07008425.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|9655777|gb|AAF94449.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121549208|gb|EAX59240.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121628884|gb|EAX61341.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|124123142|gb|EAY41885.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|126509702|gb|EAZ72296.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|126519275|gb|EAZ76498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|146315716|gb|ABQ20255.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|227009349|gb|ACP05561.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|227013207|gb|ACP09417.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229345040|gb|EEO10014.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229351171|gb|EEO16112.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229357346|gb|EEO22263.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229370797|gb|ACQ61220.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254844119|gb|EET22533.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|297542951|gb|EFH79001.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
          Length = 236

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V      ++I  ++  +         + E++   GI
Sbjct: 46  SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEDESIVFHGI 103

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +     +  I+  +    +  + R            W   
Sbjct: 104 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 153

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q  +R     S +L    +   +   + H A  D  A
Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQRIARRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 212

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 213 TAELFQAQCAHHLP 226


>gi|317182753|dbj|BAJ60537.1| DNA polymerase III subunit epsilon [Helicobacter pylori F57]
          Length = 287

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSIRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|308062811|gb|ADO04699.1| DNA polymerase III subunit epsilon [Helicobacter pylori Cuz20]
          Length = 287

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|327439003|dbj|BAK15368.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 251

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 67/196 (34%), Gaps = 33/196 (16%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +V+ D ET G   A  D+  + A +++    E ++    F      +     +   I GI
Sbjct: 87  YVVVDIETTGGSAARGDKIVEIAALKIRH-GETVDLFHRF---VNPEKPI--KNSHIHGI 140

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY-YSRNIFYRNFYDSYRWSW 122
           T ++       E   S  IH F +      I  ++I FD Y +    F+RN         
Sbjct: 141 TNERVKD----EQTISPVIHAFKAFLGDLPIVSHHIGFDWYSFLALEFFRNGIRP----- 191

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N     + + R              +   +    L  +A    I  +N H A AD  
Sbjct: 192 --TNPAACTVLLAR--------------KYLDSPRNNLNVIAETYNIPLLNHHTADADAI 235

Query: 183 ATLALVWLIREKKPKL 198
               ++ LI +K    
Sbjct: 236 CANEILQLIMKKATAQ 251


>gi|325678237|ref|ZP_08157866.1| exonuclease [Ruminococcus albus 8]
 gi|324110129|gb|EGC04316.1| exonuclease [Ruminococcus albus 8]
          Length = 651

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 31/197 (15%)

Query: 2   TNHF---VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           + +F   +I D ET G   + D   Q + +  + + E +   + +F     +     EA 
Sbjct: 199 SENFDDMIILDTETTGLSPSYDELLQVSII--NGKGEVL--FDSYF---KPNAASWDEAQ 251

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +  I+P+          E +  I Q     +   +GYN     D+   N          
Sbjct: 252 AVNHISPEMVKNSPR-LNEKAYEISQILDKAHKI-VGYNVDFDLDFLWLNGAG------- 302

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE----HVNA 174
                  N  +  +DVM+       +      +  G    KL   A   G +      +A
Sbjct: 303 -----GSNDNFKKVDVMQMFAPIYGE---INEKYGGYKWQKLTKAADYYGYDWDSHAESA 354

Query: 175 HDAKADVYATLALVWLI 191
           H++  D YATL +   +
Sbjct: 355 HNSLGDCYATLHVYKSV 371


>gi|153212279|ref|ZP_01948067.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           1587]
 gi|124116657|gb|EAY35477.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           1587]
          Length = 236

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 51/194 (26%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V    Q   +      +         +  ++   GI
Sbjct: 46  SLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQ--ARYWLVKPSQPLEEGSIVFHGI 103

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +        I+  +    +  + R            W   
Sbjct: 104 THSELQHAQAPE----QVLKELLEALYGKIVVVHFRHIEREFLRQ------ISLNIWDEA 153

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q  +R     S +L    +   +   + H A  D  A
Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQRIARRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 212

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 213 TAELFQAQCAHHLP 226


>gi|15677367|ref|NP_274522.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|7226758|gb|AAF41870.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|261392239|emb|CAX49759.1| DNA polymerase III epsilon subunit [Neisseria meningitidis 8013]
 gi|308389659|gb|ADO31979.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha710]
 gi|316986028|gb|EFV64965.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
 gi|325130586|gb|EGC53333.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           OX99.30304]
 gi|325136592|gb|EGC59193.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579]
 gi|325140658|gb|EGC63175.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385]
 gi|325199883|gb|ADY95338.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
 gi|325201794|gb|ADY97248.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240149]
 gi|325208453|gb|ADZ03905.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 244

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT   +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T Q          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIQVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|254286611|ref|ZP_04961567.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
 gi|150423369|gb|EDN15314.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
          Length = 236

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 51/194 (26%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V    Q   +      +         +  ++   GI
Sbjct: 46  SLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQ--ARYWLVKPSQPLEEGSIVFHGI 103

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +        I+  +    +  + R            W   
Sbjct: 104 THSELQHAQAPE----QVLKELLETLYGKIVVVHFRHIEREFLRQ------ISLNIWDEA 153

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q  +R     S +L    +   +   + H A  D  A
Sbjct: 154 IEFPVLDTLEIERQLLDKQRSLWQRITRRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 212

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 213 TAELFQAQCAHHLP 226


>gi|315652207|ref|ZP_07905202.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986]
 gi|315485513|gb|EFU75900.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986]
          Length = 237

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 30/211 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V  D ET G  V+ D+  +   ++V     +    E+F C    +     + + +TG
Sbjct: 4   KDYVAIDLETTGISVSKDKIIEVGLIKVINSHIE----EMFSCIINPNMPVSTKILNLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I   +      +  +    I +F    +   +  +N  FD  + +        +  +   
Sbjct: 60  IDENEIKTARYI-QDVIGDIVEF---CDGFDLIGHNTIFDYSFIKKEANNAGLNFEK--- 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                        R I  +       P          L D     GIE  N H A +D Y
Sbjct: 113 -------------RGIDTYKLCKKILPPYIQKN----LTDACAYFGIERKNMHRAFSDAY 155

Query: 183 ATLALVWLI--REKKPKLFEYLYDYRNKNQL 211
            T  L   I    K+ ++   +   + K  +
Sbjct: 156 FTHMLYQEILTNFKELEIISEIMKVKLKKNV 186


>gi|313894242|ref|ZP_07827807.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441066|gb|EFR59493.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 862

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 25/190 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+YD E+ G D + DR  Q A +R+D   + +E+ E F        +P  ++  + G + 
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLETFERF---INPG-VPVGQSEEVHGFSD 550

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                 G   A   +   +F       II  +N+ +D     N   R+            
Sbjct: 551 AYLQEHGEEPAIVLQAFKEF---SKNAIIVGHNVNYDVTIFTNELARHNL-----GNPEF 602

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +D LD+ R  Y                 + KL  LA    I H   H+A  D+ AT 
Sbjct: 603 KAIYDTLDIYRRFY-------------PNLPNHKLGFLASEFPIHHEPTHNAMDDILATA 649

Query: 186 ALVWLIREKK 195
            L+    ++ 
Sbjct: 650 QLLIYAVKEN 659


>gi|260576103|ref|ZP_05844096.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2]
 gi|259021583|gb|EEW24886.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2]
          Length = 231

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 53/206 (25%), Gaps = 29/206 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +   R  +   +     +  + +   F      +     EA  + G+ 
Sbjct: 4   IVLDTETTGFEPSEGHRIVEIGAL---ELFNHLPTGRTFHKYLNPERSMPKEAFDVHGLG 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +     +R   +F        +  +N  FD  +              +    
Sbjct: 61  DDFLRGKPL-FRAVAREFLEFI---GDATLVIHNASFDMKFLNAELAAANLPLLPFE--- 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                D + + R  +  SP                L  L    G+++     H A  D  
Sbjct: 114 --RALDTVLMARKKFPGSPA--------------SLDALCRRFGVDNSGREKHGALLDSE 157

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208
               +   +   +            K
Sbjct: 158 ILAEVYLELIGGRQPDLVLAQHQSTK 183


>gi|145295382|ref|YP_001138203.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum R]
 gi|140845302|dbj|BAF54301.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 237

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 49/187 (26%), Gaps = 30/187 (16%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G +    R    A V +  +  +                    A  + GIT + 
Sbjct: 22  FDLETTGVNPFDTRIVTSAMVTITSKGAEPIELLA-----DPGIEIPEAATAVHGITTEH 76

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A  +G    E                  +I +N          +               +
Sbjct: 77  ARANGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNH---------------D 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +   D L        + P  I             L D+     ++  NAH+A +D  A 
Sbjct: 122 PSFTIDGL-------VYDPFVIDKVKDRYRKGKRTLTDMCAHYDVQLGNAHEATSDALAA 174

Query: 185 LALVWLI 191
             + W  
Sbjct: 175 ARIAWKQ 181


>gi|118619457|ref|YP_907789.1| DNA polymerase III subunit epsilon [Mycobacterium ulcerans Agy99]
 gi|118571567|gb|ABL06318.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium ulcerans
           Agy99]
          Length = 329

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 77/295 (26%), Gaps = 38/295 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D       S             P P    + G+T  
Sbjct: 18  VVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSL---LNPGGDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+    + +         +  +N+ FD  +                     
Sbjct: 73  MLEDQPQ-FADIVGDLTELLR---GRTLVAHNVAFDYSFLAAEA---------------- 112

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT-- 184
              +L D    + +           + G  + +L+ LA   G+     HDA  D      
Sbjct: 113 ---ELTDAELPVDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSG 169

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           +    L R ++  ++  ++    +      +    + PL  ++               V 
Sbjct: 170 ILAPALQRARERDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMP--CPYLNPGRYVC 227

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
             P  +   +                 +L +R+  +       V      V  N+
Sbjct: 228 DRPLVQGMRVAL------AAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNE 276


>gi|21324010|dbj|BAB98636.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
          Length = 245

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 49/187 (26%), Gaps = 30/187 (16%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G +    R    A V +  +  +                    A  + GIT + 
Sbjct: 30  FDLETTGVNPFDTRIVTSAMVTITSKGAEPIELLA-----DPGIEIPEAATAVHGITTEH 84

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A  +G    E                  +I +N          +               +
Sbjct: 85  ARANGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNH---------------D 129

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +   D L        + P  I             L D+     ++  NAH+A +D  A 
Sbjct: 130 PSFTIDGL-------VYDPFVIDKVKDRYRKGKRTLTDMCAHYDVQLGNAHEATSDALAA 182

Query: 185 LALVWLI 191
             + W  
Sbjct: 183 ARIAWKQ 189


>gi|83814553|ref|YP_445082.1| exonuclease, putative [Salinibacter ruber DSM 13855]
 gi|83755947|gb|ABC44060.1| exonuclease, putative [Salinibacter ruber DSM 13855]
          Length = 249

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 55/197 (27%), Gaps = 28/197 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            V +D E  G D    R  Q    R         ++                     +TG
Sbjct: 8   LVFFDLEATGTDPQAARIIQIGMQRFVPSGDGAALDE--TIDVLVDPQEEIPAAVTDLTG 65

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ++P    +          RI    +  +  + GYN + +D    +  F R+       + 
Sbjct: 66  LSPDAVRQAP-PLGAHLDRIAPLLADAD--LAGYNALAYDIPLLQAEFERHG-----RTL 117

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-GIEHVNAHDAKADV 181
              + R  +LD  R      P                L  L     G    +AHDA +DV
Sbjct: 118 PGPDDRV-VLDPYRLEQVLRPRT--------------LSALYERYTGDALDDAHDALSDV 162

Query: 182 YATLALVWLIREKKPKL 198
            A   ++          
Sbjct: 163 EAAGRVLQRQLADHDID 179


>gi|19552464|ref|NP_600466.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC
           13032]
 gi|62390130|ref|YP_225532.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC
           13032]
 gi|41325466|emb|CAF19946.1| putative DNA polymerase III alpha subunit, the Gram-positive type
           [Corynebacterium glutamicum ATCC 13032]
          Length = 237

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 49/187 (26%), Gaps = 30/187 (16%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G +    R    A V +  +  +                    A  + GIT + 
Sbjct: 22  FDLETTGVNPFDTRIVTSAMVTITSKGAEPIELLA-----DPGIEIPEAATAVHGITTEH 76

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A  +G    E                  +I +N          +               +
Sbjct: 77  ARANGRPHDEVLAETISRLRAGWQAGLSVIVFNASYDLTVLRNH---------------D 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +   D L        + P  I             L D+     ++  NAH+A +D  A 
Sbjct: 122 PSFTIDGL-------VYDPFVIDKVKDRYRKGKRTLTDMCAHYDVQLGNAHEATSDALAA 174

Query: 185 LALVWLI 191
             + W  
Sbjct: 175 ARIAWKQ 181


>gi|302550179|ref|ZP_07302521.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302467797|gb|EFL30890.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 242

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 56/190 (29%), Gaps = 18/190 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  D          V             EA  + G+T + 
Sbjct: 13  FDTETTGVDVETDRIVSAAVVVQDAPGV---RPRVSRWLVNPGVPVPAEATAVHGLTEEH 69

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             R+G   A     I +  +        ++  N   FD         R+   +    W  
Sbjct: 70  LQRNGRWPAPVVYEIAETLAEQAHAGRPVVVMNAP-FDLTLLDRELRRHRASALGR-WFE 127

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               W L   +   +                    L DL    G+    AHDA AD  A 
Sbjct: 128 SAPLWVLDPRVLDKHL----------DRYRKGRRTLTDLCAHYGVALEGAHDAAADAMAA 177

Query: 185 LALVWLIREK 194
           L +   +  +
Sbjct: 178 LEVTRAVGRR 187


>gi|67077901|ref|YP_245521.1| DNA polymerase III fragment [Bacillus cereus E33L]
 gi|66970207|gb|AAY60183.1| possible exonuclease [Bacillus cereus E33L]
          Length = 287

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 37/135 (27%), Gaps = 11/135 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FVI D ET G     D+  +   +  D   + +                  EA  I G
Sbjct: 129 DQFVILDTETTGL-TLRDQIIEICVI--DLTGKIL-----LNSLVKPTINIPAEAASIHG 180

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          E  + + +  +     ++ YN               N       S 
Sbjct: 181 ITNKMVHDAP-SWIEIYKELCEVTA--GKTLLIYNAEFDLGMIESTCIANNVEFKNFKST 237

Query: 123 DNGNSRWDLLDVMRA 137
                  D +D  R 
Sbjct: 238 CIMKMYADYVDSKRW 252


>gi|297380606|gb|ADI35493.1| DNA polymerase III polC-type [Helicobacter pylori v225d]
          Length = 287

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|282849748|ref|ZP_06259132.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
 gi|282580685|gb|EFB86084.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
          Length = 862

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 25/186 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+YD E+ G D + DR  Q A +R+D   + +E+ E F        +P  ++  + G + 
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERF---INPG-IPVGQSEEVHGFSD 550

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                 G   A   +   +F       II  +N+ +D     N   R+            
Sbjct: 551 AYLQEHGEEPAIVLQAFKEF---SKNAIIVGHNVNYDVTIFTNELARHNL-----GNPEF 602

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +D LD+ R  Y                 + KL  LA    I H   H+A  D+ AT 
Sbjct: 603 KAIYDTLDIYRRFY-------------PNLPNHKLGFLASKFPIHHEPTHNAMDDILATA 649

Query: 186 ALVWLI 191
            L+  +
Sbjct: 650 QLLIYV 655


>gi|229521403|ref|ZP_04410822.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229341501|gb|EEO06504.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
          Length = 233

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 53/194 (27%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V    Q   +      +         + E++   GI
Sbjct: 43  SLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQ--ARYWLVKPSQPLEDESIVFHGI 100

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +     +  I+  +    +  + R            W   
Sbjct: 101 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 150

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q  +R     S +L    +   +   + H A  D  A
Sbjct: 151 IEFPVLDTLEIERQLLDKQRSLWQRITRRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 209

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 210 TAELFQAQCAHHLP 223


>gi|153826601|ref|ZP_01979268.1| DNA polymerase III subunit epsilon [Vibrio cholerae MZO-2]
 gi|149739613|gb|EDM53833.1| DNA polymerase III subunit epsilon [Vibrio cholerae MZO-2]
          Length = 233

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 51/194 (26%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V    Q   +      +         +  ++   GI
Sbjct: 43  SLVALDFETTGLNAEQDAIVSIGLVPFTTQRIFLNQ--ARYWLVKPSQPLEEGSIVFHGI 100

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +        I+  +    +  + R            W   
Sbjct: 101 THSELQHAQAPE----QVLKELLEALYGKIVVVHFRHIEREFLRQ------ISLNIWDEA 150

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q  +R     S +L    +   +   + H A  D  A
Sbjct: 151 IEFPVLDTLEIERQLLDKQRSLWQRITRRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 209

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 210 TAELFQAQCAHHLP 223


>gi|145296078|ref|YP_001138899.1| hypothetical protein cgR_2000 [Corynebacterium glutamicum R]
 gi|140845998|dbj|BAF54997.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 467

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 54/174 (31%), Gaps = 28/174 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62
           +FV +D ET   +       Q   V+        ES+E + C P +      E  + I G
Sbjct: 114 NFVGFDVET--ANDDWGSICQIGLVKYVDG--VEESSESWLCTPPESLNFFNEINIGIHG 169

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ITP+           F+  + +         +  +N +FD          +  D     +
Sbjct: 170 ITPEMVADQPR----FADLVPKMVEFVGDLPLVAHNAQFDFTALSRACAASGIDVPEMIY 225

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                    L + R                    + KL  +A   G+E  N HD
Sbjct: 226 ------GCSLTLARNEKL-------------QVENHKLPTVASHLGVELKNHHD 260


>gi|304387081|ref|ZP_07369332.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338830|gb|EFM04933.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           meningitidis ATCC 13091]
 gi|325132669|gb|EGC55354.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190]
 gi|325138557|gb|EGC61120.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           ES14902]
 gi|325204491|gb|ADY99944.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240355]
          Length = 244

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT   +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T Q          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIQVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|261840222|gb|ACX99987.1| DNA polymerase III subunit epsilon [Helicobacter pylori 52]
          Length = 323

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 109 FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----TELTGI 162

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 163 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 296


>gi|226308478|ref|YP_002768438.1| exonuclease [Rhodococcus erythropolis PR4]
 gi|226187595|dbj|BAH35699.1| putative exonuclease [Rhodococcus erythropolis PR4]
          Length = 241

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 34/116 (29%), Gaps = 7/116 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D ET GRD +  R    A V V          E              +A  I GI+
Sbjct: 24  ICAFDLETTGRDPSTARIVS-ACVAVIDGSNV----ETRTWLLDPGVDIPADASAIHGIS 78

Query: 65  PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + A R G   AE    I      S      +   N  +D         R    ++
Sbjct: 79  TEYAARHGQNYAEGYEEIRDALHNSWARDHAVVAFNASYDLTVMHAEGLRIGKPAF 134


>gi|254386752|ref|ZP_05002044.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194345589|gb|EDX26555.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 246

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 8/112 (7%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66
           +D ET G +    R    A V V                 AD  +P PE A  I GI+  
Sbjct: 12  FDLETTGTEPGESRIVTAAVVEVRG-----GEVRERRGWLADPGIPIPEQASAIHGISTA 66

Query: 67  KALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           +A+ +G    E ++ +            ++   N  FD         R+   
Sbjct: 67  RAVAEGRPVREVAQEVAAALVEHWRRGAVVVAYNAAFDLTLLSAELARHGLP 118


>gi|262159037|ref|ZP_06030149.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262169396|ref|ZP_06037088.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262022209|gb|EEY40918.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262029222|gb|EEY47874.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
          Length = 233

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V      ++I  ++  +         + E++   GI
Sbjct: 43  SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEDESIVFHGI 100

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +     +  I+  +    +  + R            W   
Sbjct: 101 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 150

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q  +R     S +L    +   +   + H A  D  A
Sbjct: 151 IEFPVLDTLEIERQLLDKQRSLWQRIARRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 209

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 210 TAELFQAQCAHHLP 223


>gi|227875110|ref|ZP_03993255.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243]
 gi|227844388|gb|EEJ54552.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243]
          Length = 258

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 72/236 (30%), Gaps = 24/236 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G  V  DR A  + +R             +            +A  + G+T + 
Sbjct: 37  FDTETTGVWVRRDRIATASLIR-----RVGGEDTAYNWVINPGVPMPVKASEVNGLTDEY 91

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             + G   A     I    +    +   +   N+ FD         R    + R     G
Sbjct: 92  LEKHGEQPAVALAEIASELAAAMSSGVPVVGFNVAFDFEILEAELARYELPTLRA--RLG 149

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYAT 184
                ++D +                       KL  +  A G++   A H A +DV AT
Sbjct: 150 GRIAPVIDPLVLDRTL---------DRYRRGKRKLATVCEAYGLDGNRAFHQADSDVTAT 200

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
           L L+  + E+   L          ++L       + T   + +     +R +   +
Sbjct: 201 LDLLGAMIERYESLRGMEL-----DELHDFQAAAHRTWAENFNEYMARTRPDYRPV 251


>gi|169831719|ref|YP_001717701.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638563|gb|ACA60069.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 236

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 58/183 (31%), Gaps = 26/183 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G      D     A VRV    +       F+     +      A  ITGI
Sbjct: 49  YSVIDTETTGLRPDAGDEVISVACVRV-VSAKIQNDY--FYTLVDPEREVPELAATITGI 105

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++     V+E    + + +        +I   NI+FD  +       N       +  
Sbjct: 106 TTERVQGQPVLE----KVLPRMLREMAGGVITGFNIQFDLVFLN-----NGLKRKCGTTL 156

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N     D+L + R                  A +F L  +A    I   + H+A  D   
Sbjct: 157 NPPMVLDVLSLCRI-------------LKPRARTFGLGAMAREYQISVKDRHNALGDALI 203

Query: 184 TLA 186
           T  
Sbjct: 204 TAR 206


>gi|159903267|ref|YP_001550611.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9211]
 gi|159888443|gb|ABX08657.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9211]
          Length = 245

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 55/192 (28%), Gaps = 29/192 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +I D ET G D   D+  +   +    +   + +   F     ++      A  I 
Sbjct: 20  PKTLLILDTETTGLDSDKDQCLEIGAILFHVKTRSVLAQNSFLLPVDENS-----AESIN 74

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I P +  R      E   +  +        ++ +N                        
Sbjct: 75  RI-PAEITRIFQPW-EMGMKYFEELVDCAEAVVAHNVAFDKQ------------------ 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L  +   +  S + I WPS     +   ++DLALA  I   +AH A  D 
Sbjct: 115 ----WFGSPPLPKLIKPWICSMEDISWPSHLQLRSRPSVRDLALAYEIPVWSAHRALTDC 170

Query: 182 YATLALVWLIRE 193
                +     +
Sbjct: 171 IYLAEVFRRCDQ 182


>gi|229119030|ref|ZP_04248372.1| exonuclease [Bacillus cereus Rock1-3]
 gi|228664421|gb|EEL19920.1| exonuclease [Bacillus cereus Rock1-3]
          Length = 240

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 37/135 (27%), Gaps = 11/135 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FVI D ET G     D+  +   +  D   + +                  EA  I G
Sbjct: 82  DQFVILDTETTGL-TLRDQIIEICVI--DLTGKIL-----LNSLVKPTINIPAEAASIHG 133

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          E   ++ +  +     ++ YN               N       S 
Sbjct: 134 ITNEMVHDAP-SWIEIYIKLCEVTA--GKTLLIYNAEFDLGMIESTCIANNVEFKNFKST 190

Query: 123 DNGNSRWDLLDVMRA 137
                  D +D  R 
Sbjct: 191 CIMKMYADYVDSKRW 205


>gi|126342238|ref|XP_001368108.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Monodelphis domestica]
          Length = 241

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 62/208 (29%), Gaps = 31/208 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47
             FV  D E  G   A    A+ +   +          D          ++   +  C  
Sbjct: 8   ETFVFLDLEATGLPNAHPEIAEISLFAIHRFSLEHPERDESGTLQLPRVLDKLTLCMC-- 65

Query: 48  ADDYLPDPEAVFITGITPQKALRDGV--VEAEFSRRIHQFFS--VPNTCIIGYNNIRFDD 103
             +    P+A  ITG++ Q    +          R + +F        C++ +N   +D 
Sbjct: 66  -PEQNFTPKASEITGLSNQNLADNHKAGFNGAVIRALREFLKRQKSPICLVAHNGFDYDF 124

Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              R    R   D        G    D L  +R                 G  S+ L +L
Sbjct: 125 PLLRTELQRLGADL-----PGGTVCLDTLPALRG---LDKVHHHSTRASHGKKSYSLGNL 176

Query: 164 -ALANGIEHVNAHDAKADVYATLALVWL 190
                  E   AH A+ DVYA + +   
Sbjct: 177 YRRYFDDEPQAAHSAEGDVYALVMVFLH 204


>gi|37677065|ref|NP_937461.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|37201610|dbj|BAC97431.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
          Length = 239

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+  D+ET G D   D+      V  D   E I  +               E+  I G+
Sbjct: 52  SFLALDFETTGLDAKHDKILSIGMV--DLTLEGINLSSAEEILLNHGAYIKAESARINGL 109

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ   +   +E    R     F      ++  ++   +  + +    ++F  +      
Sbjct: 110 TPQALEQGCSLEQGMMR----LFERAQGKVLLAHSAIIEQGFLQAFAQQHFQLA-----K 160

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L +             +  +    +SF+L DL     +   ++H A +D  A
Sbjct: 161 LPCHFVDTLQI--------EKRFSYAGKSGQRSSFQLDDLRRCYHLPDYHSHSAASDALA 212

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
              L  +  +K     +   + 
Sbjct: 213 CAELFIVQSKKLDLNKQRQLNT 234


>gi|269102313|ref|ZP_06155010.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162211|gb|EEZ40707.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 242

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 50/194 (25%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G +   D       +       +I S +              E+V I GIT
Sbjct: 52  FVALDFETTGLNSKTDDIVSIGLIPFTIH--RIYSKQAQHWVVKPKRPLAEESVVIHGIT 109

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                           ++    +     ++ +               R F D+       
Sbjct: 110 HSDIQAAP-DLRRILDQVLDALA--GKVVVVH----------YKTIERQFMDAALQLRIG 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
               + ++D +   Y          W         S +L       G+     H A  D 
Sbjct: 157 EGIEFPVVDTLALEYEIERQKHSGFWNRLRGRRPGSVRLNKCRERYGLPTYQPHHALTDA 216

Query: 182 YATLALVWLIREKK 195
            AT  L+       
Sbjct: 217 IATAELLQAQIAYH 230


>gi|149185255|ref|ZP_01863572.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21]
 gi|148831366|gb|EDL49800.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21]
          Length = 229

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 50/186 (26%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++D ET G D    DR  +   V +            F      +      A  + G++
Sbjct: 4   IVFDTETTGLDPRTGDRMVEIGCVEM-VSLVPTG--NTFHAYYNPERDMPAGAEAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +   + +  +  F        +  +N  FD  +          ++   S   
Sbjct: 61  AAFLSDKPL-FRDTAHELLDFI---GDAPLIAHNAGFDFGFLNAELALCEREAVCMSRM- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D + + +  +  +                 L  L    GI+  H   H A  D  
Sbjct: 116 ----IDTVALAKKRHPGA--------------KLSLDALCTRYGIDRSHRVKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAQVY 163


>gi|294853583|ref|ZP_06794255.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819238|gb|EFG36238.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 191

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 18/158 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V++    E +  +      P  D  P  EA  + 
Sbjct: 37  KKRVIVFDTETTGILP-YDRIITLGAVKI-EGGELLTQSLYLIFDPRKDSSPQAEA--VH 92

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR--------- 112
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +         
Sbjct: 93  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDMHYIQREFRKAEVDMLDQP 149

Query: 113 --NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW 148
                D  R  W   +++ D      A+ A   D  +W
Sbjct: 150 VYCTMDGARRLWRGDSTKLDHCSQRLALRARGTDTARW 187


>gi|256784395|ref|ZP_05522826.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289768274|ref|ZP_06527652.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289698473|gb|EFD65902.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 244

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 6/111 (5%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R      V      E +   E              +AV + GI+ ++
Sbjct: 11  FDLETTGTDPREARIVT-GAVIEVMGSEPLGRREWLA---DPGVEIPADAVAVHGISNER 66

Query: 68  ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A R+G    + +  I             +   N  FD         R+   
Sbjct: 67  AAREGRPADQVADAIATVLVDHWKAGVPVVAYNAAFDLTLLAAELRRHALP 117


>gi|255324551|ref|ZP_05365668.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
 gi|255298457|gb|EET77757.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
          Length = 223

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + +D ET   +    R    A VR+D +  +                   EA  + GIT 
Sbjct: 9   LAFDLETTSANPKEARIVTSALVRIDGRDVQKVEHLA-----DPGIEIPQEATNVHGITT 63

Query: 66  QKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +KA  +G    E  +   +           +I YN                         
Sbjct: 64  EKARAEGRPHEEVLKDTVEAIKAAWEDGLTLIVYNAAFDLTVL----------------- 106

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +    + +   +   Y       +W           L  +    G+E  NAH+A AD  
Sbjct: 107 RSLTGDFTVTGPVYDPYVIDRVSDKW-----RKGKRTLGAVCEHYGVELGNAHEATADAL 161

Query: 183 ATLALVWLIREKKPKLFEYL 202
           A   + W    +       +
Sbjct: 162 AAARVAWKQVRQHYPNLAQM 181


>gi|240173340|ref|ZP_04751998.1| DNA polymerase III subunit epsilon [Mycobacterium kansasii ATCC
           12478]
          Length = 329

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 52/196 (26%), Gaps = 28/196 (14%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D         +            DP +  I G+T  
Sbjct: 18  VIDVETSGFRPGQARIISIAVLGLDADGRV---EQSLVSLLNPGV--DPGSTHIHGLTAG 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+    + +         +  +N+ FD  +          +    +     
Sbjct: 73  MLEDQPQ-FADIVGDVVELLR---GRTLVAHNVAFDYAFLAAEAEMAGAELPVDT----- 123

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
               ++  +                       +L+ LA   G+     HDA  D      
Sbjct: 124 ----VMCTVELSRRLELGVDN----------LRLETLAAHWGVIQERPHDAFDDARVLTG 169

Query: 187 LVWLIREKKPKLFEYL 202
           ++    E+  +   +L
Sbjct: 170 VLAAALERAREREVWL 185


>gi|116629671|ref|YP_814843.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238854243|ref|ZP_04644587.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 202-4]
 gi|116095253|gb|ABJ60405.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238833054|gb|EEQ25347.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 202-4]
          Length = 937

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 28/202 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      D   QF    + ++ + +++                    +T I
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +   +       ++ +I +        I   +N+ FD  +          +       
Sbjct: 66  SNRDVAQARDFNY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KL+DL     I+H+N H A +D   
Sbjct: 117 -TGKAIDTVELAQIAFPTF-------------PSYKLRDLTARLKIKHLNPHRADSDALV 162

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
           T  L+  + +K   L +   + 
Sbjct: 163 TAKLLLKVIKKLEALPQATLNT 184


>gi|311110686|ref|ZP_07712083.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri MV-22]
 gi|311065840|gb|EFQ46180.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri MV-22]
          Length = 937

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 28/202 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      D   QF    + ++ + +++                    +T I
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +   +       ++ +I +        I   +N+ FD  +          +       
Sbjct: 66  SNRDVAQARDFNY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KL+DL     I+H+N H A +D   
Sbjct: 117 -TGKAIDTVELAQIAFPTF-------------PSYKLRDLTARLKIKHLNPHRADSDALV 162

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
           T  L+  + +K   L +   + 
Sbjct: 163 TAKLLLKVIKKLEVLPQATLNT 184


>gi|159906145|ref|YP_001549807.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C6]
 gi|159887638|gb|ABX02575.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C6]
          Length = 191

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 12/195 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G      + AQ + +  D+  +  +    ++            A  + G+T
Sbjct: 2   YVFLDTETTGLHP--GQIAQLSYLVTDKNLKLKKVFNQYYSV----DRMSRSAAKVHGLT 55

Query: 65  PQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
                 L +G+   +    +          +I  +NI FD  + +  F R   +      
Sbjct: 56  MDILDELSNGMTFEDTVDEVRDDLEDS---VIIGHNISFDIRFLKAEFERLGPEYIPKDK 112

Query: 123 DNGNSRWDLLDVMR-AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 +  +  +        P  I+     +      L+      G   V  HDA+ D 
Sbjct: 113 FCTMFHFTPICKLPGQKRYKRPKLIELMEFLEQCPHEGLEFTKETYGCSDVGFHDARYDT 172

Query: 182 YATLALVWLIREKKP 196
                          
Sbjct: 173 GILYLCYKKGVLLDH 187


>gi|152994734|ref|YP_001339569.1| exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
 gi|150835658|gb|ABR69634.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
          Length = 220

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 61/196 (31%), Gaps = 24/196 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--STEVFFCKPADDYLPDPEAVFITG 62
           +++ D ET G D   D    F  V + +   +++     V       D      +V I  
Sbjct: 28  YLVLDIETSGLDPKQDHIVSFGWVCIHKGVIELDTARHIVLDSAQIGD------SVGIHM 81

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT     + G  +    R +          ++  ++   +  + ++ +      S+  SW
Sbjct: 82  ITDSDVQQQGKKQESVLRYLRHLLRER---VLVMHHAPMELGFLKHAWQTEALPSFSVSW 138

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L + R              +      F+L       G+     HDA  D  
Sbjct: 139 ------LDTLAIERTKA-------NRSQQPIQDGGFRLGACRERYGLPDYQGHDALTDAL 185

Query: 183 ATLALVWLIREKKPKL 198
           AT  L+      + + 
Sbjct: 186 ATAELLLAQIAYQGRD 201


>gi|322833483|ref|YP_004213510.1| ribonuclease T [Rahnella sp. Y9602]
 gi|321168684|gb|ADW74383.1| ribonuclease T [Rahnella sp. Y9602]
          Length = 238

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 27/223 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D       + T  F  +P +  +  PEA+   G
Sbjct: 31  VVIDVETAGFNAKTDALLEIAAITLKMDEDGWLQSDETVHFHVEPFEGAILVPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPTNPLRGAVSEYEALHEIFKVIRKGMKEQNCNRAIIVAHNANFDHSFLMAAAERAGLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    ++     +   AH 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ISAGIVFDSSQAHS 193

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           A  D   T  L   +  +  +L  +     +  ++      + 
Sbjct: 194 ALYDTERTAELFCELVNRWKRLGGWPLALSD-EEVEDETASEE 235


>gi|320159156|ref|YP_004191534.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|319934468|gb|ADV89331.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 238

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+  D+ET G D   D+      V  D   E I  +               E+  I G+
Sbjct: 51  SFLALDFETTGLDAKHDKILSIGMV--DLTLEGINLSSAEEILLNHGAYIKAESARINGL 108

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ   +   +E    R     F      ++  ++   +  + +    ++F  +      
Sbjct: 109 TPQALEQGCSLEQGMMR----LFERAQGKVLLAHSAIIEQGFLQTFAQQHFQLA-----K 159

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L +             +  +    +SF+L DL     +   ++H A +D  A
Sbjct: 160 LPCHFVDTLQI--------EKRFSYAGKSGQRSSFQLDDLRRCYHLPDYHSHSAASDALA 211

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
              L  +  +K     +   + 
Sbjct: 212 CAELFIVQSKKLDLNKQRQLNT 233


>gi|169347300|ref|ZP_02866238.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
 gi|169293917|gb|EDS76050.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
          Length = 261

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 73/224 (32%), Gaps = 28/224 (12%)

Query: 1   MTNHFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M N +V+ D+ET G +    D   Q A V  ++  E +       CKP   +   P A  
Sbjct: 1   MKNKYVVLDFETTGVNRYHNDEVVQVAIV--NQDDEVL---INELCKPKHHFS-WPSAQR 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GI+P       +    +  RI + F   +  I+ YN       + + +      D  +
Sbjct: 55  INGISPLMVKDK-LCFESYIDRIIEIF-DNSEFIVCYNIA-----FEQGMLKNYGIDISK 107

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
           + + +    +  +   R  +              G     L   A   G     AHDA  
Sbjct: 108 YVFKDPMKDFAYIYGERGYH-------------GGYKWQSLSTCAKYFGYNFA-AHDALE 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
           DV AT      I   K    E  Y    K     L+  Q     
Sbjct: 154 DVKATRYCFEQIEAYKNGKIEKSYLNNWKLLFEPLVIKQGKKYY 197


>gi|312887481|ref|ZP_07747079.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
 gi|311300023|gb|EFQ77094.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
           paludis DSM 18603]
          Length = 232

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 29/205 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADD 50
           M ++F+  D ET G      +P           Q + +   R  E+I+     + +  DD
Sbjct: 1   MQDYFLFIDTETSGLPKDWSQPYSNDANWPYALQVSWIIYTRAGEEIKR-NNHYIR-DDD 58

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
           +  +PEA  I GI+ +     G    +  + ++Q        ++G + +  D   +   F
Sbjct: 59  FTINPEAYNIHGISREFLNLHGEWRKDVMQLLYQDMLQYKPMVVG-HYVELDYNIAGVDF 117

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGI 169
           YR   D       N          M     +         R+      +L  L +     
Sbjct: 118 YRIGMD-------NPMDTLPRYCTMLGSKGY--------GRNPRVEYLRLGQLYSALFNR 162

Query: 170 EHVNAHDAKADVYATLALVWLIREK 194
              N H+A  D  AT    + +   
Sbjct: 163 TLYNQHNAIIDAEATAECFFEMMRD 187


>gi|227503316|ref|ZP_03933365.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49725]
 gi|227075819|gb|EEI13782.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49725]
          Length = 470

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 59/205 (28%), Gaps = 26/205 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63
           FV  D ET   +       Q   VR     E   +++ + C P        E  + I GI
Sbjct: 126 FVAVDVET--ANDNWGSICQIGAVRYRDGGET--ASQSWLCTPPPGLEHFAEINISIHGI 181

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +  A  +  +  F     + +I  +N++FD    R+       D       
Sbjct: 182 TAADVEGA-MPFATAAAELFDFI---GSDVIVAHNVQFDSSALRSGLLAAGAD------- 230

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +  +    + +              + KL  +    G      HDA  D  A
Sbjct: 231 --------VPTVPLACSLALSRDASRQGVISVANHKLPTVVKHLGGASFTHHDATEDARA 282

Query: 184 --TLALVWLIREKKPKLFEYLYDYR 206
             T+      R         L+  R
Sbjct: 283 AGTIITGLAQRFGHTGSITDLFTTR 307


>gi|87302916|ref|ZP_01085720.1| exonuclease [Synechococcus sp. WH 5701]
 gi|87282412|gb|EAQ74371.1| exonuclease [Synechococcus sp. WH 5701]
          Length = 187

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 31/193 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ FV  D+ET   + + D     A +RV    + +  T      P+  ++       I 
Sbjct: 23  SSSFVALDFET--ANYSRDSVCSLAIIRV-ESLKVVSRTYRLIRPPSPHFMF----TDIH 75

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT      +     E        F       I  +N  FD    R              
Sbjct: 76  GITWGDVKSEP-TFKELWHEFRPLFE--GISFIAAHNASFDSSVMRACC------DTYRI 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
              G      + + R  +   P                L  +    G+ H+  H+A +D 
Sbjct: 127 VPPGAPYLCTVKLARQTWQLRPA--------------NLPSVCAYLGL-HLEHHNALSDA 171

Query: 182 YATLALVWLIREK 194
            A   +V      
Sbjct: 172 EACANIVRAAAGC 184


>gi|308183650|ref|YP_003927777.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4]
 gi|308065835|gb|ADO07727.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4]
          Length = 287

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRTILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae
           CDC3059-06]
          Length = 307

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 30/196 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  +V  D ET   +           V+  +    +++          +   D   +FI
Sbjct: 1   MSYSYVALDVET--ANDFRGSVCSIGLVKF-KDGNIVDAFYTL---INPEEEFDDFNIFI 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GITP+  L       E  + I  F     + I+  +  +FD                  
Sbjct: 55  HGITPEDVLDSP-TFPEVRKAIVDFI---GSDIVVAHFAQFDMGA---------LKDVYQ 101

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            ++      + +   R                 G  ++KL+ LA    IE  + H+A +D
Sbjct: 102 KYELDFDNIEYICSYRLAKV----------ALPGQLNYKLKRLAKNLNIELDH-HNALSD 150

Query: 181 VYATLALVWLIREKKP 196
             A+  ++  +     
Sbjct: 151 ARASGLILEYLLSTNS 166


>gi|32455548|ref|NP_862304.1| Ycg4D [Corynebacterium glutamicum]
 gi|9836715|gb|AAG00279.1|AF164956_11 Ycg4D [Corynebacterium glutamicum]
          Length = 296

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 58/192 (30%), Gaps = 26/192 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G      +  + A    D   + +     F  +       +  A  + GI+P
Sbjct: 115 LVLDTETTGLGYD-AQVIEIAI--ADASGKVL-----FDTRIKPTVAIEAAAQEVHGISP 166

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
              +       E + RI    S     +I +N   FD             ++  WS    
Sbjct: 167 DALINAP-SWPEVANRIEALLS--GRTVIIFNA-SFDSRLIAQTAGAFGLETGWWS---- 218

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
                     R     +          +   S  L D   A G      AH A AD  AT
Sbjct: 219 ------TCTTRCAMHLAASAY---GSTNPYGSISLADATSAAGVPWTGAAHSAAADTLAT 269

Query: 185 LALVWLIREKKP 196
           + LV  I   KP
Sbjct: 270 VELVKSIARVKP 281


>gi|255745686|ref|ZP_05419634.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|255736761|gb|EET92158.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
          Length = 233

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V      ++I  ++  +         + E++   GI
Sbjct: 43  SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEDESIVFHGI 100

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +     +  I+  +    +  + R            W   
Sbjct: 101 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEA 150

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q  +R     S +L    +   +   + H A  D  A
Sbjct: 151 IEFPVLDTLEIERQLLDKQRSLWQRIARRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 209

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 210 TAELFQAQCAYHLP 223


>gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
 gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
          Length = 417

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 62/198 (31%), Gaps = 29/198 (14%)

Query: 5   FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D+ET G      DR  + A V +D Q       E             P+   I  I
Sbjct: 6   FAVIDFETTGLFAGGHDRVVEVAVVHLDAQGTVEGRWETL---VNPGRDLGPQ--RIHQI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                +     E   + ++          ++  +N  FD  +      R        +  
Sbjct: 61  RASDIVDAPAFEH-IAGQLVDLLE---GRVLVAHNASFDLKFLVAELER--------TAA 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             ++ +  L  M+    + P   +            L D   A  I+  +AH A AD +A
Sbjct: 109 WMSTDFVSLCTMQLAREYLPGAGR-----------ALADCCAALDIQLDDAHRASADAFA 157

Query: 184 TLALVWLIREKKPKLFEY 201
           T  L+    E +     +
Sbjct: 158 TAQLLAAYIESEANDEIW 175


>gi|295103993|emb|CBL01537.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Faecalibacterium prausnitzii SL3/3]
          Length = 330

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 60/247 (24%), Gaps = 34/247 (13%)

Query: 1   MTNHFVIYDYETF-GRDVA-----------LDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
           M  + V++D E   G                    +   V++D     +++  +   +P 
Sbjct: 1   MPRNLVLFDLEWNIGYQPYTFNYHGVQQTLRGEIVEIGAVKIDEDANVLDTFSIHL-RPR 59

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                      +TG+T       G       + + +F                D    + 
Sbjct: 60  IFRKLQHHIAKVTGLTQADL-DKGEP---IVQGLRRFMQWCGPDAEFAEWGLDDVPVLKQ 115

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
             +    D  R +                ++                    L+ +    G
Sbjct: 116 NLFLCNLDESRPT----------------VWYDLQQVFLREHPRKEGEGMTLESVVTRMG 159

Query: 169 IEHVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
           I      HDA +D   T  +  L+  +         D   +  L +         + H  
Sbjct: 160 IPMERPFHDALSDTLYTADVCRLLDLRAGLAAYPTEDEALRQSLCQTPGDYRDFTVFHGY 219

Query: 228 GMFGASR 234
               A R
Sbjct: 220 VEQYAWR 226


>gi|152990071|ref|YP_001355793.1| DNA polymerase III subunit epsilon [Nitratiruptor sp. SB155-2]
 gi|151421932|dbj|BAF69436.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2]
          Length = 276

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 29/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G      +  +   ++       I+  E F                +TGI 
Sbjct: 70  FVVVDIETNGSKPEFSQVIEIGAIKFKGN-TIIDRFESFIYA----EDVPEYISKLTGIL 124

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        + E      +F       +   +N+RFD  +  +   +   +        
Sbjct: 125 QEDLENAP-SQKEVLLSFKEFLQD---AVFVAHNVRFDYNFISSKLEQLGLEKLAN---- 176

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +   +D+ R              +   +  + L+ L    GI    +H A AD    
Sbjct: 177 --RKLCSIDLAR--------------KTIESERYGLEFLNETLGINTAVSHRAYADALTA 220

Query: 185 LALVWLIREKKPKL 198
             ++ +  EK P  
Sbjct: 221 YKILQMSFEKLPNE 234


>gi|15677698|ref|NP_274859.1| oligoribonuclease [Neisseria meningitidis MC58]
 gi|11133786|sp|Q9JXW1|ORN_NEIMB RecName: Full=Oligoribonuclease
 gi|7227120|gb|AAF42197.1| oligoribonuclease [Neisseria meningitidis MC58]
 gi|325133508|gb|EGC56171.1| oligoribonuclease [Neisseria meningitidis M13399]
 gi|325200921|gb|ADY96376.1| oligoribonuclease [Neisseria meningitidis H44/76]
 gi|325206775|gb|ADZ02228.1| oligoribonuclease [Neisseria meningitidis M04-240196]
          Length = 187

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +DD L   D     
Sbjct: 4   KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDDVLNKMDEWNTA 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 64  THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|317050855|ref|YP_004111971.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
 gi|316945939|gb|ADU65415.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
          Length = 250

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 52/191 (27%), Gaps = 12/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D+ET G D             V    ++I   E            + +++ + GIT
Sbjct: 60  LLALDFETTGFDPKRHGIVSIG--LVPMSLQRIRCAEARHWIVKPRVQLESQSIVVHGIT 117

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       + +R + +        ++  ++   +  +          +  ++   +
Sbjct: 118 HSDVATAP----DLARILDELLEAMAGHVMVVHHRGIERSFLDAALKARIGEGIQFPVID 173

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L   +     +    + P       S +L        + H   H A  D  AT
Sbjct: 174 TMELEARLHRQKPPGLLARLLGRKP------VSIRLAASRARCNLPHYRPHHALTDALAT 227

Query: 185 LALVWLIREKK 195
             L+       
Sbjct: 228 AELLQAQIAHH 238


>gi|87121437|ref|ZP_01077326.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121]
 gi|86163280|gb|EAQ64556.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121]
          Length = 242

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 50/190 (26%), Gaps = 15/190 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G     D       V +    ++I      +           +++ I  +T 
Sbjct: 56  IALDLETTGLKSQKDTIVSVGSVAM--NAKRIRCASSNYWVVNPGAPLSAQSITIHELTH 113

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
               +     + +   I    +     ++ +               R F           
Sbjct: 114 SDVEQAP-PLSRYFEAILDALA--GKVVVVH----------CAAIERQFLYQAAKKLYGQ 160

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +  + +LD +                  G TS +L       G+    AH A  D YA+ 
Sbjct: 161 DLFFPVLDTLALEQKILKQRPLMARMFRGNTSVRLDACRQRYGLPRYKAHHALTDAYASA 220

Query: 186 ALVWLIREKK 195
            L+       
Sbjct: 221 ELLQAQIAHH 230


>gi|229496898|ref|ZP_04390606.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
 gi|229316216|gb|EEN82141.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
          Length = 257

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 66/206 (32%), Gaps = 23/206 (11%)

Query: 2   TNHFVIYDYETFGRD-----VALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
            +  V++D +T G          D P   Q A   +D    +++    F        +P 
Sbjct: 47  PHSIVLFDTDTTGLPNAPIQREEDSPELIQLAWCVLDSHLREVKRCNRFISGIN---VPS 103

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRN 113
            EA  I GIT ++  + G    +    + +F S  +   ++  +N+ FD +       R 
Sbjct: 104 -EATAIHGITTEELKQRGEAARDV---LLEFLSDWDGDTLLVAHNLAFDLHILGKALERA 159

Query: 114 FYDSYRWS-------WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD-GATSFKLQDLAL 165
                +           +  +  +  ++ +  +    +    P ++             L
Sbjct: 160 GCTQGQIRKVSCHAAQYSYCTMLETCNLCKLPHLEHTNARAIPHQEPYKYPRLGELHSFL 219

Query: 166 ANGIEHVNAHDAKADVYATLALVWLI 191
                    HDA  D+   +   + +
Sbjct: 220 FGNDPTGETHDAVQDLDTCVRCFYQL 245


>gi|261343971|ref|ZP_05971616.1| ribonuclease T [Providencia rustigianii DSM 4541]
 gi|282568361|gb|EFB73896.1| ribonuclease T [Providencia rustigianii DSM 4541]
          Length = 214

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 64/200 (32%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D +    I+ T  F  +P +    +P A+  TG
Sbjct: 20  VVIDVETGGFNPKTDGLLEIAAITLKMDNEGWLSIDETLHFHVEPFEGANLEPAALAFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  I+  +N  FD  +  N   R+   
Sbjct: 80  IDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            I             L    +  GI      A
Sbjct: 140 ------RNPFHPFATFDTAALSGLVFGQTI-------------LAKACVTAGIPFDGKQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  K
Sbjct: 181 HGALYDTNRTALLFCELVNK 200


>gi|307720491|ref|YP_003891631.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978584|gb|ADN08619.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
          Length = 269

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 28/225 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D ET G  +   +  + A V+V +  + I+  E            +P    ITGI 
Sbjct: 69  FCIVDIETNGSKIEKHQIIELAAVKV-KNGQIIDRFESLV----HTKEINPHITEITGIA 123

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +    + +F       +   ++++FD  +      +   +        
Sbjct: 124 ADDTTNAP----QLKDVLIRFKLFLGNAVFVAHDVKFDYSFISKSLQKIGLEPLL----- 174

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S   L    R + ++                 +               H A +DV  T
Sbjct: 175 NRSLCSLALAERTVVSYRYALSYLNETLKLNPKAR--------------HHRAMSDVITT 220

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
             L  L  +   +  + + D    ++    +      PL+ V   
Sbjct: 221 YGLFLLSLDNLDENIKTVEDLIKFSKEAPRLKRPKFDPLLEVKQE 265


>gi|300361735|ref|ZP_07057912.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
 gi|300354354|gb|EFJ70225.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
          Length = 937

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 28/202 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      D   QF    + ++ + +++                    +T I
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGCAII-KKRKVVKTYSFL---INPHREIPQAVENLTHI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +   +       ++ +I +        I   +N+ FD  +          +       
Sbjct: 66  SNRDVAQA-RDFKYYAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KL+DL     I+H+N H A +D   
Sbjct: 117 -TGKAIDTVELAQIAFPTF-------------PSYKLRDLTARLKIKHLNPHRADSDALV 162

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
           T  L+  + +K   L +   + 
Sbjct: 163 TAKLLLKVIKKLENLPQATLNT 184


>gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5]
 gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5]
          Length = 229

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 26/199 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  +   + +            F+  P  D     EA  I GI+
Sbjct: 7   IILDTETTGLDPRQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPF--EAYRIHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +     +    +F S     I   +N  FD  +  +    +           
Sbjct: 64  GEFLKDKPLFHT-IADDFLEFISDSKLII---HNAPFDIKFLNHEL--SLLKRTEIKLLE 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
             +  D L + R+++                + + L  L     +++     H A  D  
Sbjct: 118 LANTIDTLVMARSMFPG--------------SKYNLDALCKRFKVDNSGRQLHGALKDAA 163

Query: 183 ATLALVWLIREKKPKLFEY 201
               +   +   +   F+ 
Sbjct: 164 LLAEVYVELMGGRQSAFKM 182


>gi|327483977|gb|AEA78384.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 233

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 13/194 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+ET G +   D       V      ++I  ++  +         + E++   GI
Sbjct: 43  SLVALDFETTGLNAEQDAIVSIGLVPFTT--QRIFLSQARYWLVKPSQPLEDESIVFHGI 100

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T  +       E    + + +     +  I+  +    +  + R            W   
Sbjct: 101 THSELQHAQAPE----QVLKELLEALHGKIVVVHFRHIERDFLRQ------ISLNIWGEV 150

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ R +        Q  +R     S +L    +   +   + H A  D  A
Sbjct: 151 IEFPVLDTLEIERQLLDKQRSLWQRITRRP-LPSIRLGQSRMRYHLPPYSPHHALTDAIA 209

Query: 184 TLALVWLIREKKPK 197
           T  L          
Sbjct: 210 TAELFQAQCAHHLP 223


>gi|167854538|ref|ZP_02477319.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Haemophilus parasuis 29755]
 gi|219872178|ref|YP_002476553.1| ribonuclease T [Haemophilus parasuis SH0165]
 gi|167854293|gb|EDS25526.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Haemophilus parasuis 29755]
 gi|219692382|gb|ACL33605.1| ribonuclease T [Haemophilus parasuis SH0165]
          Length = 216

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 61/203 (30%), Gaps = 30/203 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D      ++       KP ++   +PEA+ + G
Sbjct: 22  VVVDVETGGLNAQTDALLEIAAITLKMDDDGYLHLDEKFHRHVKPFENANINPEALKVNG 81

Query: 63  ITPQKALRDGVVEA----EFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I    A R  V E     E  + + +          +I  +N  FD  + +    R    
Sbjct: 82  IDVDNAERGAVPEDIAITEMFKMVRKAVKDNGCQRAVIVAHNATFDQAFLQAAVKR---- 137

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
               +  +    + + D            +             L        I      A
Sbjct: 138 --INTKRDPFHPFAMFDTATLAGFMYGQTV-------------LVKACQMAQIPFDGKQA 182

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D   T  L   +  K   
Sbjct: 183 HSALYDTERTAELFCAMVNKLKD 205


>gi|282878339|ref|ZP_06287131.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
 gi|281299525|gb|EFA91902.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
          Length = 904

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 83/265 (31%), Gaps = 21/265 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V++D ET G +V  D   Q A VR+ +      S+ V F +   D +P         + 
Sbjct: 522 IVVFDTETTGLNVFEDDIVQIAAVRMRQGKVVPGSSFVVFMETDRD-IPQQLGEIENPLI 580

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE  +    +       ++  +N  +D +       R            
Sbjct: 581 AEMQRHVLHSHAEGLQMFMDYV---GDSMLLGHNADYDYHILDFNLQRYLPAISLKEQ-- 635

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L ++R               +     +KL+ L     +E  NAH A ADV AT
Sbjct: 636 CPRYLDSLKLVRL-------------LEPNLREYKLKHLLSVLHLEGENAHLADADVDAT 682

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLID--IQNMTPLVHVSGMFGASRSNTALIAP 242
             +V     K   +     ++    + +K  +   +N + + + +      R        
Sbjct: 683 CNVVRHCYGKAKLMVPSQLEWIRHPRFKKRAEVLRKNYSDIYNAAKQRLYQREKPGDEPV 742

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQD 267
           +    +   + +      + +    
Sbjct: 743 LVREMQRFYAFLCSEKLLEPQDKLH 767


>gi|262044634|ref|ZP_06017689.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259038035|gb|EEW39251.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 215

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D     + + T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P       V E +    I +        S  +  I+  +N  FD  ++     R    
Sbjct: 80  INPHDPQLGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      +A     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACIAAGMPFDGAQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTEQTAQLFCEIVNR 200


>gi|153838933|ref|ZP_01991600.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149747604|gb|EDM58532.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 236

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 19/201 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV  D+ET G D   D+      V +      I S++ ++          PE   I G+
Sbjct: 51  SFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWY--ICHGQFIKPETAKINGL 108

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ   + G+   E   R+ +  +     ++  +    +  +            +   + 
Sbjct: 109 TPQDLAK-GLPLDEGMNRLLERIT---GKVVLAHGCCIEKAFIHA--------YFSSRYQ 156

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +     +D ++    FS  G     +    +S++L DL     +    +H A +D  A
Sbjct: 157 VEDFPAYFIDTLQIEKQFSYAG-----KSGAHSSYQLDDLRRYYHLPGYLSHSAASDALA 211

Query: 184 TLALVWLIREKKPKLFEYLYD 204
              L  +  +K   L +    
Sbjct: 212 CAELFLVQSKKLTALPDVTLR 232


>gi|317179729|dbj|BAJ57517.1| DNA polymerase III subunit epsilon [Helicobacter pylori F30]
          Length = 287

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|311086562|gb|ADP66643.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 38/226 (16%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEA 57
           +I D ET G +         R  +   V      E I+       F          +  A
Sbjct: 7   IILDTETTGINQTSLPHINHRIIEIGAV------EIIDRCFTGNNFHVYIQPGRSIESGA 60

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + + GIT +  L    +  + +     +       I+  +N  FD  +            
Sbjct: 61  LKVHGITNKFLLDKP-IFKDIADSFLNYIKNS---ILVIHNASFDVGFINQELEILNKKI 116

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAH 175
              ++    S  D L + R ++    +               L  L         H N H
Sbjct: 117 KINTF---CSIIDTLKMARKLFPGKKNT--------------LDALCTRYKINKSHRNLH 159

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            A  D Y    L  L+   +  LF        K   +KL     + 
Sbjct: 160 SAIVDSYLLGKLYLLMTGGQDSLFSDNTIN-YKENFKKLKKNIQLK 204


>gi|183985197|ref|YP_001853488.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M]
 gi|183178523|gb|ACC43633.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M]
          Length = 329

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 78/295 (26%), Gaps = 38/295 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D       S             P P    + G+T  
Sbjct: 18  VVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSL---LNPGVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+    + +         +  +N+ FD  +          +         +
Sbjct: 73  MLEDQPQ-FADIVGDLTELLR---GRTLVAHNVAFDYSFLAAEAELADAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT-- 184
           S    +++ R +     +              +L+ LA   G+     HDA  D      
Sbjct: 123 SVMCTVELARRLELGIDNL-------------RLETLAAHWGVTQERPHDAFDDALVLSG 169

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           +    L R ++  ++  ++    +      +    + PL  ++               V 
Sbjct: 170 ILAPALQRARERDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMP--CPYLNPGRYVC 227

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
             P  +   +                 +L +R+  +       V      V  N+
Sbjct: 228 DRPLVQGMRVAL------AAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNE 276


>gi|332674336|gb|AEE71153.1| DNA-directed DNA polymerase III epsilon subunit [Helicobacter
           pylori 83]
          Length = 287

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPNYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|323191554|gb|EFZ76814.1| DNA polymerase III subunit epsilon domain protein [Escherichia coli
           RN587/1]
          Length = 155

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 12/118 (10%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-VNRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            GI  +  L      AE +     +        +  +N  FD  +    F     D  
Sbjct: 66  HGIADEFLLDKP-TFAEVADEFMDYIRGAE---LVIHNATFDIGFMDYEFSLLKRDIP 119


>gi|261400727|ref|ZP_05986852.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
           23970]
 gi|269209492|gb|EEZ75947.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
           23970]
          Length = 244

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT   +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAK 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIEVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|227496849|ref|ZP_03927115.1| possible DNA polymerase III subunit epsilon [Actinomyces
           urogenitalis DSM 15434]
 gi|226833644|gb|EEH66027.1| possible DNA polymerase III subunit epsilon [Actinomyces
           urogenitalis DSM 15434]
          Length = 174

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA----VFI 60
           + + D ET G   A D   +   V          +             PD        FI
Sbjct: 49  YAVVDLETTGLSPATDAILEIGLVLTAPDGTPQRTWSTL---INPGAGPDGAIEVGPTFI 105

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
            G+ P           + +  + +  +     ++  +N RFD  +    
Sbjct: 106 HGLLPDDLAGAP-SLDDVADLLVRDLA---GRVVVAHNARFDVGFLTQA 150


>gi|145595801|ref|YP_001160098.1| hypothetical protein Strop_3286 [Salinispora tropica CNB-440]
 gi|145305138|gb|ABP55720.1| DNA polymerase III, epsilon subunit [Salinispora tropica CNB-440]
          Length = 607

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 53/188 (28%), Gaps = 24/188 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G         +   V+V       E   V            P    +TGI
Sbjct: 53  TFVVVDLETTGGTPDGGGITEIGAVKVRGG----EQLGVLATLVNPGTPVPPFVTVLTGI 108

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    L       E      +F   P   ++  +N  +D  + +     + Y        
Sbjct: 109 TQSMLLPAP-PITEVLPSFLEFL--PPDAVLVAHNAPYDVGFLKAACAAHGYRWP----- 160

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + R +              D   + +L  LA          H A  D  A
Sbjct: 161 -SPRVLDTAALARRV-----------LTRDEVPNRRLGTLAAYFRTATRPTHRALDDALA 208

Query: 184 TLALVWLI 191
           T+ ++  +
Sbjct: 209 TVDVLHGL 216


>gi|306836447|ref|ZP_07469422.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
 gi|304567666|gb|EFM43256.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
          Length = 454

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 68/230 (29%), Gaps = 24/230 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63
           FV  D ET   +       Q   VR     E   +++ + C P        E  + I GI
Sbjct: 110 FVAVDVET--ANDNWGSICQIGAVRYRDGGET--ASQSWLCTPPPGLEHFAEINISIHGI 165

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T        +  A  +  +  F     + +I  +N++FD    R+       D       
Sbjct: 166 TAADVEGA-MPFATAAAELFDFI---GSDVIVAHNVQFDSSALRSGLLAAGAD------- 214

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +  +    + +              + KL  +    G      HDA  D  A
Sbjct: 215 --------VPTVPLACSLALSRDASKQGVISVANHKLPTVVKHLGGASFTHHDATEDARA 266

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
              ++  + ++          + ++      ++   + P++       + 
Sbjct: 267 AGTIITGLAQRFGHTGSITDLFTSREFSLGRLESAAILPVLRAHTAPTSG 316


>gi|224584057|ref|YP_002637855.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468584|gb|ACN46414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 257

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 64/217 (29%), Gaps = 26/217 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  I+  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      LA     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
           A  D   T  L   I           Y  R  N +  
Sbjct: 183 ALYDTERTAVLFCEISIAGSAWAAGRYLCRRTNNVAN 219


>gi|85059419|ref|YP_455121.1| ribonuclease T [Sodalis glossinidius str. 'morsitans']
 gi|84779939|dbj|BAE74716.1| ribonuclease T [Sodalis glossinidius str. 'morsitans']
          Length = 234

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 59/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D     + +ST  F   P    L  PEA+   G
Sbjct: 20  VVIDVETAGFNAVTDALLEIAAVTLKMDDDGWLQADSTLHFHVDPFPGALLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPHNPLRGAVGEYEALHEIFKMVRKGIKDQGCNRAIIVAHNAAFDHGFLMAAVSRAGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D            +   +      +F               AH 
Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTVLAKACAAAGIAF-----------NSGEAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 183 ALYDTERTATLFCELVNR 200


>gi|21328725|gb|AAM48731.1| DNA polymerase III, epsilon subunit [uncultured marine
           proteobacterium]
          Length = 231

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 29/196 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +  DR  +   V     +  + +   +      +      A  + G++
Sbjct: 4   IVLDTETTGFEPSEGDRIVEIGAV---ELFNHLPTGRTYHQYINPERNMPEAAFNVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       +    ++    F +      +  +N  FD  +           +       
Sbjct: 61  EEFLSDKP-IFKNIAQEFIDFIADSK---LVIHNASFDMKFLNAELGWVNRPALPNDQT- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  SP                L  L    GI++ +   H A  D  
Sbjct: 116 ----IDTLAIARRKFPGSPA--------------SLDALCRRFGIDNSSRTLHGALLDSE 157

Query: 183 ATLALVWLIREKKPKL 198
               +   +   +   
Sbjct: 158 ILAEVYLELVGGRQPD 173


>gi|309378712|emb|CBX22662.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 244

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT   +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIEVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|254227511|ref|ZP_04920943.1| exonuclease family [Vibrio sp. Ex25]
 gi|262396223|ref|YP_003288076.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|151940123|gb|EDN58949.1| exonuclease family [Vibrio sp. Ex25]
 gi|262339817|gb|ACY53611.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 236

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 19/201 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV  D+ET G D   D+      V +      I S++ ++          PE   I G+
Sbjct: 51  SFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWY--ICHGQFIKPETAKINGL 108

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ   + G+   E   R+ +  +     ++  +    +  +            +   + 
Sbjct: 109 TPQDLAK-GLPLDEGMNRLLERIT---GKVVLAHGCCIEKAFIHA--------YFSSRYQ 156

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +     +D ++    FS  G     +    +S++L DL     +    +H A +D  A
Sbjct: 157 VEDFPAYFIDTLQIEKQFSYAG-----KSGAHSSYQLDDLRRYYHLPGYLSHSAASDALA 211

Query: 184 TLALVWLIREKKPKLFEYLYD 204
              L  +  +K   L +    
Sbjct: 212 CAELFLVQSKKLTALPDVTLR 232


>gi|317181232|dbj|BAJ59018.1| DNA polymerase III subunit epsilon [Helicobacter pylori F32]
          Length = 287

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|218457859|ref|YP_002418864.1| putative DEDDH exonuclease [Pseudomonas phage SN]
 gi|218379127|emb|CAT99715.1| putative DEDDH exonuclease [Pseudomonas phage SN]
          Length = 184

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 31/197 (15%)

Query: 5   FVIYDYETFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           F ++D ET G             R  +FAGV  D + + ++  E F C      + +   
Sbjct: 3   FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGE-KILDEVE-FIC--NPGIVIEEII 58

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             ITG+  +  ++      +   ++  FFS  +  I   +N+ FD +       R     
Sbjct: 59  TKITGLKNEDLVKHP-SFLDQRHKVRDFFSRADANI--AHNLPFDKFMLTCDLARGKLGL 115

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                       D+  V  +   F                 +LQ L       +V  H A
Sbjct: 116 EEV----NFPSLDICTVEESARLFGH-------------RMRLQHLYEHYCGPYVQKHRA 158

Query: 178 KADVYATLALVWLIREK 194
             DV     +   +   
Sbjct: 159 LDDVRLLHEVCKRMGVY 175


>gi|153829717|ref|ZP_01982384.1| Gp39 [Vibrio cholerae 623-39]
 gi|148874796|gb|EDL72931.1| Gp39 [Vibrio cholerae 623-39]
          Length = 192

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 14/192 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            I D ET G D +  +  +   +   +  E I     +            EA  I GIT 
Sbjct: 10  FILDTETTGLD-SKSQIVEVTAI-CAKSGELI-----YSSLVRPQGFIPAEATRIHGITN 62

Query: 66  QKALRDGVVEAEFSRRIHQF-FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       F   I+    ++ N   I YN       + ++                
Sbjct: 63  SDVADAPT----FLDIIYPLSLALRNRTGIIYNADFDSRMFIQSYERNLQISHLDLRSAY 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182
              +  LL+   A+  ++    ++ + + G    +L +     GI+  +  AH A AD  
Sbjct: 119 FALKHKLLNSQCAMNWYAQFWGEFDTTNGGYRWQRLTNACQQQGIDISDLTAHRALADCE 178

Query: 183 ATLALVWLIREK 194
            T  L+  +  +
Sbjct: 179 MTRRLINAVNGQ 190


>gi|294792636|ref|ZP_06757783.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           6_1_27]
 gi|294456535|gb|EFG24898.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           6_1_27]
          Length = 862

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 25/190 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+YD E+ G D + DR  Q A +R+D   + +E+ E F        +P  ++  + G + 
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERF---INPG-IPVGQSEEVHGFSD 550

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                 G   A   +   +F       II  +N+ +D     N   R+            
Sbjct: 551 AYLQEHGEEPAIVLQAFKEF---SKNAIIVGHNVNYDVTIFTNELARHNL-----GNPEF 602

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +D LD+ R  Y                 + KL  LA    I H   H+A  D+ AT 
Sbjct: 603 KAIYDTLDIYRRFY-------------PNLPNHKLGFLASEFPIHHEPTHNAMDDILATA 649

Query: 186 ALVWLIREKK 195
            L+    ++ 
Sbjct: 650 QLLIYAVKEN 659


>gi|260801299|ref|XP_002595533.1| hypothetical protein BRAFLDRAFT_117464 [Branchiostoma floridae]
 gi|229280780|gb|EEN51545.1| hypothetical protein BRAFLDRAFT_117464 [Branchiostoma floridae]
          Length = 231

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 36/218 (16%)

Query: 3   NHFVIYDYETF----GRDVALDRPAQF--AGVRVDRQW-------------EKIESTEVF 43
             FV  D ET     G +    +  +   A VR D+                 ++     
Sbjct: 19  QTFVFLDLETTDLRTGLEEDEPQVTEISLAAVRRDQLLSGTTVPPGGASLPRIMDKF-TA 77

Query: 44  FCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRF 101
             +P       P+A  IT +T Q   +  V + +  + +    +   P  C++ +N   F
Sbjct: 78  CVRPTHS--IHPKAAEITNLTNQSLGKHRVFDEDLVKSVVHLLNRQEPPVCLVAHNGDWF 135

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D    ++   R        S   G    D+L V             +  +    +  +L 
Sbjct: 136 DFPVLKSELRR--------SKTAGLFPKDVLCV----DTMLAMKHLYAGQFRSFSLPRLH 183

Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
           +           AH A+ DV   + +V  +  +K   +
Sbjct: 184 ENLFGVAPPPEVAHTAEGDVITMVKIVKKMGAEKIIQW 221


>gi|120553834|ref|YP_958185.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
 gi|120323683|gb|ABM17998.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
          Length = 235

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 56/206 (27%), Gaps = 29/206 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFIT 61
            ++ D ET G + + D       V +  +   I   +  ++   +P  D     E V I 
Sbjct: 41  LIVLDLETTGLNASKDEVIAIGAVAI--EGGVIHLNDQFDLILRRPELDIR---ETVLIH 95

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+   +      E    +       N   I   +  FD  +           +    
Sbjct: 96  GIGPEALTQG----YETQDALLYLLEWMNGDPILAYHSAFDQKFLEKTLKSQLGYTLPHV 151

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +                   + +             L D A   G+E    H A AD 
Sbjct: 152 WMD-----------------VAELMPAFFPKATIKGRGLDDWADVFGLEISERHHAAADA 194

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN 207
             T  L  +   K  K         +
Sbjct: 195 LVTAELALIALNKARKNDVKTLKELS 220


>gi|325142705|gb|EGC65085.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           961-5945]
 gi|325198636|gb|ADY94092.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136]
          Length = 244

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT   +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|313668102|ref|YP_004048386.1| DNA polymerase III, epsilon chain [Neisseria lactamica ST-640]
 gi|313005564|emb|CBN87000.1| DNA polymerase III, epsilon chain [Neisseria lactamica 020-06]
          Length = 244

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT   +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T Q          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|187927567|ref|YP_001898054.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J]
 gi|187724457|gb|ACD25622.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12J]
          Length = 216

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 51/183 (27%), Gaps = 14/183 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G DV  D       VR+               +P  +    PE++ +  +  
Sbjct: 39  VALDCETTGLDVRTDEIISIGAVRIVGNRILTSQRLELLIRPQGEMR--PESICVHRLRN 96

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +     GV   +    +  F    +  ++GY         +R +         +   +  
Sbjct: 97  RDL-DSGVSIEQAVHTLLHFI--GSRPLVGYYLEFDVAMLNRVVVPMLGIGLPQPKIEVS 153

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +D    +   Y           + D     +   +     +   +AHDA  D     
Sbjct: 154 ALYYDHQFALLPPYR---------QQGDPDLDLRFATVMKELDLPTWDAHDALNDAVMAA 204

Query: 186 ALV 188
              
Sbjct: 205 LAF 207


>gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 228

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 53/189 (28%), Gaps = 29/189 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  +   V +             +  P  D     EA  + G++
Sbjct: 4   IVLDTETTGFDPLTGHRIVEIGCVELFNHL-PTGKVYHQYVNPERDM--PEEAFKVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q      V    F+  +  F       I+  +N  FD  +      R  +     S   
Sbjct: 61  EQFLSDKPV----FAEIVADFMDFIGDAILVIHNAEFDMRFINAELSRLGFQPLPMSRS- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
                D + + R  +  +                 L  L     I+  H + H A  D  
Sbjct: 116 ----IDTVAMARKKFPGAQA--------------NLDALCRRFEIDNTHRSFHGALLDSE 157

Query: 183 ATLALVWLI 191
               +   +
Sbjct: 158 LLAEVYLQL 166


>gi|167554101|ref|ZP_02347842.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205321613|gb|EDZ09452.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 287

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 57/182 (31%), Gaps = 24/182 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G D    +  +     V+ + E+I     F  +       DP A  + GI+ 
Sbjct: 106 VFLDTETTGLDAG-AQALEIG--LVNARGERI-----FETRLKPTVAIDPAAAAVHGISD 157

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +  +R      + ++++             ++  R         F          + ++ 
Sbjct: 158 EDLVRAP-SWPDIAQQLQ------------HHIGRRPLVIFNAEFDTRILKQTAAAHNDP 204

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            S  D L V      +   G   P+   G  S     ++ A       AH A  D   T 
Sbjct: 205 ASWLDSLTV--YCAMWLAAGYYGPTNRYGTISLS-GAVSQAGLSWIGEAHSAVTDAVMTA 261

Query: 186 AL 187
            +
Sbjct: 262 QV 263


>gi|306845957|ref|ZP_07478524.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
 gi|306273592|gb|EFM55437.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
          Length = 235

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     DR      V+++   E +  +      P  D  P  EA  I 
Sbjct: 13  KKRVIVFDTETTGILP-YDRIITLGAVKIEGD-ELLTQSLYLIFDPRKDSSPQAEA--IH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +   E +  I ++FS  +   +  +N +FD +Y +  F +   D     
Sbjct: 69  GFDNWMTRYQDLFH-ELAAPIRKWFSWADE--VVAHNAQFDIHYIQREFRKAEVDML--- 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKAD 180
                  +  ++  R ++                 S KL       G       H A  D
Sbjct: 123 ---DQPVYCTMEGARRLWRGD--------------SAKLDHCLAKIGLARTGYRHGALED 165

Query: 181 VYATLALVWLIREKKPK 197
            Y T  L    +     
Sbjct: 166 AYLTAGLYLHQQGVAKP 182


>gi|332361545|gb|EGJ39349.1| DNA polymerase III [Streptococcus sanguinis SK1056]
          Length = 814

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 32/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           MT +   + + D E  G   +  +  Q     +       ++ E            D   
Sbjct: 1   MTQNDYKYAVVDLEATGTG-SSAKIIQIGIALI-ENGIITKTYET---DVNPHEELDEHI 55

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  R     ++ +  +++        I   +N++FD        +   +D 
Sbjct: 56  KELTGLDDERLGRAPE-FSQVAAEVYELIQD---AIFVAHNVKFDANLLAEALFWEGFDL 111

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     R D +++ +  Y                  + L +L     I   NAH A
Sbjct: 112 LT-------PRVDTVELAQVFYPTFD-------------KYSLGNLCGLLDISLENAHTA 151

Query: 178 KADVYATLALVWLIREK 194
            AD  AT  L   I++K
Sbjct: 152 LADAQATAQLFLKIQDK 168


>gi|317010079|gb|ADU80659.1| DNA polymerase III subunit epsilon [Helicobacter pylori India7]
          Length = 287

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 62/218 (28%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+ D     +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYISD-----LTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L    V  E  +++  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSVH-EALQKLRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + +Q    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSQCANTLIKRPPR 260


>gi|312172307|emb|CBX80564.1| ribonuclease T [Erwinia amylovora ATCC BAA-2158]
          Length = 224

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A V  ++D +   + + T  F  +P    +   EA+   G
Sbjct: 22  VVIDVETAGFDAKTNALLEIAAVTLKMDSEGWLEKDETLHFNVEPFPGSVMLAEALAFNG 81

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  ++  +N  FD  +      R    
Sbjct: 82  IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 141

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L     A G+      A
Sbjct: 142 ------RNPFHPFVTFDTAALSGLVLGQTV-------------LAKACNAAGMSFDSAQA 182

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 183 HSALYDTLQTADLFCELVNR 202


>gi|282598821|ref|YP_003359140.1| putative exonuclease [Clavibacter phage CMP1]
 gi|262212609|gb|ACY35945.1| putative exonuclease [Clavibacter phage CMP1]
          Length = 236

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 71/228 (31%), Gaps = 26/228 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  +++D ET G DV  DR    A +  +D           +             A  I 
Sbjct: 5   DKIMVFDTETSGVDVENDRIVT-AFIGLMDPDGTMT-EFHEWL--IDPGIPIPEGASDIH 60

Query: 62  GITPQKALRDGVVEAE-FSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           GIT +KA  +G  + +     I       S  N  ++  N         R +       +
Sbjct: 61  GITTEKAHAEGRKDIDKALMEIATKLDYASRWNYPVVIMNAPYDLTILDRELRRHVGIKN 120

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176
           +R          D   + + +Y F               S KL DLA   G+    NAHD
Sbjct: 121 FRAPN----VVLDTFVIDKKLYTFR------------KGSRKLVDLARIYGVPVEENAHD 164

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
           A+AD      +     + +      L    ++    K     ++    
Sbjct: 165 AQADCRMAGRVTLKQLQHEWLAPLTLAQIHHRQIKNKADQAASLQAYF 212


>gi|254673235|emb|CBA08224.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha275]
 gi|325144796|gb|EGC67087.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240013]
          Length = 244

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           MT   +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MTTRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|254672653|emb|CBA06469.1| oligoribonuclease [Neisseria meningitidis alpha275]
          Length = 215

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 32  KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 91

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 92  THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 151

Query: 115 YDSYRW 120
              +  
Sbjct: 152 NYFHYR 157


>gi|118474671|ref|YP_892037.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118413897|gb|ABK82317.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 265

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G  +   +  +   +++     +I   E F   P            +TGI 
Sbjct: 73  FCVVDIETSGG-INSGQIIEIGALKL-LDGVEIGRFESFVYAPN----VPENISELTGIY 126

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                +        +  + +F       +   +N++FD  +      R  +         
Sbjct: 127 AADLAKAPS----LANVLEKFKLFLGDSVFVAHNVKFDYDFISISLERLGFGMLLN---- 178

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   +D+ R              R   +  + L  L    GI + + H A  D  A 
Sbjct: 179 --RRICTIDLAR--------------RTIISQKYGLGTLKELLGISNAH-HRALNDAIAA 221

Query: 185 LALVWLI 191
             +    
Sbjct: 222 AEIFKEC 228


>gi|28899929|ref|NP_799584.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260363223|ref|ZP_05776092.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260880510|ref|ZP_05892865.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260898537|ref|ZP_05907033.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|28808212|dbj|BAC61417.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308085005|gb|EFO34700.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308092696|gb|EFO42391.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308112379|gb|EFO49919.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 236

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 19/205 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV  D+ET G D   D+      V +      I S++ ++          PE   I G+
Sbjct: 51  SFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWY--ICHGQFIKPETAKINGL 108

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ   + G+   E   R+ +  +     ++  +    +  +            +   + 
Sbjct: 109 TPQDLAK-GLPLDEGMNRLLKRIT---GKVVLAHGCCIEKAFIHA--------YFSSRYQ 156

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +     +D ++    FS  G     +    +S++L DL     +    +H A +D  A
Sbjct: 157 VEDFPAYFIDTLQIEKQFSYAG-----KSGAHSSYQLDDLRRYYHLPGYLSHSAASDALA 211

Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208
              L  +  +K   L +       +
Sbjct: 212 CAELFLVQSKKLTALPDVTLRQLTR 236


>gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 247

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V +  +         F      D   +  A  +TG+T
Sbjct: 4   IILDTETTGLEWKKGNRVVEIGCVEL-LERRPSGR--NFHRYLKPDCDFEAGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E E      ++       I   +N  FD  +      R    ++     +
Sbjct: 61  LEFLADKPAFE-EIVDEFLEYIDGAELII---HNAAFDLGFLDYELSRCG--AHLGRIVD 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             S  D L + R  Y    +               L  L    G++  H   H A  D  
Sbjct: 115 RCSVVDTLLLARERYPGQRN--------------SLDALCKRLGVDNSHRQLHGALLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILADVYIALTSGQEEI 176


>gi|332652795|ref|ZP_08418540.1| exonuclease [Ruminococcaceae bacterium D16]
 gi|332517941|gb|EGJ47544.1| exonuclease [Ruminococcaceae bacterium D16]
          Length = 195

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 29/190 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT  ++ +D ET   + A DR +    V V  +   +E  +        +       V +
Sbjct: 1   MTGRYIAFDVET--PNSANDRISAIG-VTVVERGAVVEQHDYL---VNPETRFASFNVAL 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGITP+          +  + +   F      ++  +N  FD               Y  
Sbjct: 55  TGITPEMVADKPA-FPQLWQELEPIFDSG---LLIAHNAPFDMSVLAK-----CLRDYGI 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W    S      + R                    + KL  L    G+E  + H A +D
Sbjct: 106 RWRPSVSYACTCQMSR-------------RLLPQLPNHKLNTLCDFLGLELDH-HRAGSD 151

Query: 181 VYATLALVWL 190
             A   ++  
Sbjct: 152 SLACGEILLH 161


>gi|302557603|ref|ZP_07309945.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302475221|gb|EFL38314.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 240

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 6/111 (5%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R      V   R  E +   E              +AV + GI+ ++
Sbjct: 11  FDLETTGTDPREARIVT-GAVIEVRAGEPLGRREWLA---DPGVPIPEDAVAVHGISGER 66

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A  +G    + +  I    +        +   N  FD         R    
Sbjct: 67  AAAEGRPADQVADAIAGVLTAYWQTGVPVVAYNAAFDLTLLSAELRRYGLP 117


>gi|220980061|emb|CAP72253.1| Hypothetical protein [Escherichia coli LF82]
 gi|323934293|gb|EGB30715.1| exonuclease [Escherichia coli E1520]
          Length = 185

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 23/196 (11%)

Query: 2   TNHFVI-YDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
               V   D E+ G D +A  +  + A  R   + E     +    +       DP+A  
Sbjct: 1   MTTIVAGIDIESTGLDFLAGHKIIEIAITRY--ELETQRHIDSLEMRFNPRRNIDPKAQA 58

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI+ ++   + ++    +  I  +    +   + +N   FD  + R+ F         
Sbjct: 59  VHGISLEQLAAEPLLSNH-ASEIGAYMEACSA-WVAHNGEAFDIPFIRHEFSGYGVRL-- 114

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                      ++D M +          W + D      +    +L    +H  AH A  
Sbjct: 115 -------PDVPVIDTMLSG--------LWATEDGKRPRLEELAFSLGFIYDHAKAHSALY 159

Query: 180 DVYATLALVWLIREKK 195
           D    +   +  R K 
Sbjct: 160 DTNLMMQCFFKARNKY 175


>gi|309801335|ref|ZP_07695464.1| exonuclease [Bifidobacterium dentium JCVIHMP022]
 gi|308222224|gb|EFO78507.1| exonuclease [Bifidobacterium dentium JCVIHMP022]
          Length = 187

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/205 (10%), Positives = 47/205 (22%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M       D ET G          +   + V     +      F                
Sbjct: 1   MM-----LDTETTGLHPEEGATIIEIGALLVTP-GNENARP-RFEQLVDPQRPLPEFISR 53

Query: 60  ITGITPQKALRDGVVEAEFS---RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           +TGI+          +A      + +   +       +  +N  FD  +       +  D
Sbjct: 54  LTGISDGMLRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDAAERAHDPD 113

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +  +                    +          +      ++ DL +   I  V  H 
Sbjct: 114 ANEF-----------------DCRWLCTKEMSWELNPQKRHHRVSDLIVDYRIGDVEEHR 156

Query: 177 AKADVYATLALVWLIREKKPKLFEY 201
           A +D      +   +  +      +
Sbjct: 157 ALSDAIQEQMIYRALCREASMRGRW 181


>gi|219681615|ref|YP_002468001.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682172|ref|YP_002468556.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471303|ref|ZP_05635302.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621905|gb|ACL30061.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624458|gb|ACL30613.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311087677|gb|ADP67756.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 38/226 (16%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEA 57
           +I D ET G +         R  +   V      E I+       F          +  A
Sbjct: 7   IILDTETTGINQTSLPHINHRIIEIGAV------EIIDRCFTGNNFHVYIQPGRSIESGA 60

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + + GIT +  L    +  + +     +       I+  +N  FD  +            
Sbjct: 61  LKVHGITNKFLLDKP-IFKDIADSFLNYIKNS---ILVIHNASFDVGFINQELEILNKKI 116

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAH 175
              ++    S  D L + R ++    +               L  L         H N H
Sbjct: 117 KINTF---CSIIDTLKMARKLFPGKKNT--------------LDALCTRYKINKSHRNLH 159

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            A  D Y    L  L+   +  LF        K   +KL     + 
Sbjct: 160 SAIVDSYLLGKLYLLMTGGQDSLFSDNTIN-YKENFKKLKKNIQLK 204


>gi|146284212|ref|YP_001174365.1| exonuclease [Pseudomonas stutzeri A1501]
 gi|145572417|gb|ABP81523.1| exonuclease [Pseudomonas stutzeri A1501]
 gi|327482571|gb|AEA85881.1| exonuclease [Pseudomonas stutzeri DSM 4166]
          Length = 235

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 24/202 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V+ D ET G  +  D       V ++     I+ ++ F C        + E+V I 
Sbjct: 37  QQRLVVLDLETTGLHLKRDLVIAIGAVVIEDGA--IDYSQQFECTLCRQVKVN-ESVLIH 93

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P +    G+  AE      +F     + ++ ++       + + +  R   +   +S
Sbjct: 94  GIAPSELAN-GLPPAEALLSFMEF--AAGSIVLAFH-----APFDQRMLGRALKNELGYS 145

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
            +N       L  M    A    G              L        I     H+A AD 
Sbjct: 146 LENSFLDVADLAPMLFPEAMIHRG-------------SLDHWLDYFNIHIPQRHNASADA 192

Query: 182 YATLALVWLIREKKPKLFEYLY 203
            AT  +  ++  +  ++    +
Sbjct: 193 MATAEIALILLNRAQRIGLTTF 214


>gi|313114851|ref|ZP_07800350.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622801|gb|EFQ06257.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 329

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 63/259 (24%), Gaps = 34/259 (13%)

Query: 1   MTNHFVIYDYE--------TF---GRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
           M  + V++D E        TF   G          +   V++D     +++  +   +P 
Sbjct: 1   MPRNLVLFDLEWNIGYQPYTFNYHGVQQTFRGEIVEIGAVKIDEDANVLDTFSIHL-RPR 59

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                      +TG+T       G       + + +F                D    + 
Sbjct: 60  IFRKLQHHIAKVTGLTQADL-DKGEP---IVQGLRRFMQWCGPDAEFAEWGMDDVPVLKQ 115

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
             Y    D  + +                I+                    L+ +    G
Sbjct: 116 NLYLCNIDESKPT----------------IWYDLQQVFLREHPRKEGEGMTLESVVTRLG 159

Query: 169 IEHVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
           +      HDA +D   T  +  ++  +         +   +  L           + H  
Sbjct: 160 LPMERQFHDALSDTLYTADVCRMLDLRAGLAAYPTEEESLRASLCPAPGDYRDFEVFHGY 219

Query: 228 GMFGASRSNTALIAPVAWH 246
                 R++  +       
Sbjct: 220 VEQYTWRTDPKIYIMSCPE 238


>gi|238018443|ref|ZP_04598869.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
 gi|237864914|gb|EEP66204.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
          Length = 862

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 25/190 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+YD E+ G D + DR  Q A +R+D   + +E+ E F        +P  ++  + G + 
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLETFERF---INPG-VPVGQSEEVHGFSD 550

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                 G   A   +   +F       II  +N+ +D     N   R+            
Sbjct: 551 AYLKEHGEEPAIVLQAFKEF---SKNAIIVGHNVNYDVTIFTNELARHNL-----GNPEF 602

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +D LD+ R  Y                 + KL  LA    I H   H+A  D+ AT 
Sbjct: 603 KAIYDTLDIYRRFY-------------PNLPNHKLGFLASEFPINHEPTHNAMDDILATS 649

Query: 186 ALVWLIREKK 195
            L+    ++ 
Sbjct: 650 QLLIYAVKEN 659


>gi|254780064|ref|YP_003058171.1| DNA polymerase III subunit epsilon [Helicobacter pylori B38]
 gi|254001977|emb|CAX30236.1| DNA polymerase III epsilon subunit [Helicobacter pylori B38]
          Length = 287

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L       E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSAH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon
 gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2]
          Length = 229

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 26/217 (11%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  +   + +            F+  P  D   D  A  I GI+
Sbjct: 7   IILDTETTGLDPRQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPFD--AYRIHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +     +    +F S     I   +N  FD  +  +    +           
Sbjct: 64  GEFLKDKPLFHT-IADDFLEFISDSKLII---HNAPFDIKFLNHEL--SLLKRAEIKLLE 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
            ++  D L + R+++                + + L  L     +++     H A  D  
Sbjct: 118 LSNAIDTLVMARSMFPG--------------SKYNLDALCKRFKVDNSGRQLHGALKDAA 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
               +   +   +   F+ +      N L        
Sbjct: 164 LLAEVYVELTGGRQSAFKMVDKSVETNNLATNQVNNK 200


>gi|311085987|gb|ADP66069.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 38/226 (16%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEA 57
           +I D ET G +         R  +   V      E I+       F          +  A
Sbjct: 7   IILDTETTGINQTSLPHINHRIIEIGAV------EIIDRCFTGNNFHVYIQPGRSIESGA 60

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + + GIT +  L    +  + +     +       I+  +N  FD  +            
Sbjct: 61  LKVHGITNKFLLDKP-IFKDIADSFLNYIKNS---ILVIHNASFDVGFINQELEILNKKI 116

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAH 175
              ++    S  D L + R ++    +               L  L         H N H
Sbjct: 117 KINTF---CSIVDTLKMARKLFPGKKNT--------------LDALCTRYKINKSHRNLH 159

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            A  D Y    L  L+   +  LF        K   +KL     + 
Sbjct: 160 SAIVDSYLLGKLYLLMTGGQDSLFSDNTIN-YKENFKKLKKNIQLK 204


>gi|227833455|ref|YP_002835162.1| hypothetical protein cauri_1631 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184446|ref|ZP_06043867.1| hypothetical protein CaurA7_10673 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454471|gb|ACP33224.1| hypothetical protein cauri_1631 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 461

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 24/225 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPEAVFITGI 63
           F   D ET   +       Q   VR  R  E+ ES   + C P       D   + I GI
Sbjct: 109 FTAVDVET--ANDNWGSVCQIGAVRF-RDGEETESR-TWLCTPPPGLEHFDKVNISIHGI 164

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         A+ +  + +F     T  +  +N +FD    R+   +           
Sbjct: 165 TAEDVADA-SPFADAAAELFEFL---GTDTLVAHNAQFDSTALRSGLKKADAP------- 213

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +  +R   + +       +      + KL  +A   G E    H+A AD  A
Sbjct: 214 --------VPEVRLACSLALARDASRAGVIDVANHKLPTVASFLGAEDFRHHEATADARA 265

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
              +V  + ++          +  ++     +  +++ P++  + 
Sbjct: 266 AGEIVSALAQRFGHSGSIEDLFTTRDFALGTLSEESVIPVLRANT 310


>gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C]
 gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
 gi|122425898|sp|Q1RJM1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon
 gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C]
 gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
          Length = 229

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 26/200 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  +   + +            F+  P  D     EA  I GI+
Sbjct: 7   IILDTETTGLDPKGGHRIVEIGAIEM-VNKVLTGRHFHFYLNPERDMPF--EAYRIHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +     +    +F +      +  +N  FD  +  +    +           
Sbjct: 64  GEFLKDKPLFHT-IADDFLEFIADSK---LVIHNAPFDVKFLNHEL--SLLKRAEIKLLE 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
                D L + R+++                + + L  L     +++     H A  D  
Sbjct: 118 LEHAIDTLVMARSMFPG--------------SKYSLDALCKRFKVDNSGRQLHGALKDAA 163

Query: 183 ATLALVWLIREKKPKLFEYL 202
               +   +   +   F+ L
Sbjct: 164 LLAEVYVELTGGRQSAFKML 183


>gi|332705935|ref|ZP_08426009.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L]
 gi|332355339|gb|EGJ34805.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L]
          Length = 818

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 27/183 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            ++D ET G  V+ D   + A +R+    +K      +        +   E+  I G + 
Sbjct: 464 TVFDVETTGFSVSQDEVVEIAAIRL-VDGKKQARFHAYITN----TVSVGESERIHGHSD 518

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +    +G           +F    ++ ++G+N        +            +  W   
Sbjct: 519 RFLAENGRNAKHVFGEFFEFV--GDSLLVGHNVGFDIKMVTAQAQKAGVSYPKKLQW--- 573

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                             D ++  +R   +  + L+ LA    + H+ +H A  DV  T+
Sbjct: 574 -----------------EDTLELANRFIESERYSLEVLAEHLNLTHLPSHKAMDDVETTI 616

Query: 186 ALV 188
            L+
Sbjct: 617 DLL 619


>gi|326774035|ref|ZP_08233317.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
 gi|326636174|gb|EGE37078.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
          Length = 259

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 19/196 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +D ET G D + DR    A V          + +S   +             A  + G+T
Sbjct: 27  FDTETTGVDPSGDRLVTAALVWRAAPRADGVRPQSVATWLA--DPGVEIPEAAAAVHGVT 84

Query: 65  PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            ++A  +G    E    + +    ++     +   N  +D         R+         
Sbjct: 85  TERARAEGRSVTEVLAEVSEHLVAAMAAGTPVVAFNASYDLTLMEAELARHGLP--TMHS 142

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADV 181
             G     + D +    A                  +L DL    G+    A H A+ DV
Sbjct: 143 RLGRELGPIADPLVLDRAV---------DRYRRGKRRLGDLCEVYGVRVDEALHTAEVDV 193

Query: 182 YATLALVWLIREKKPK 197
            ATL ++  +    P+
Sbjct: 194 AATLDVLEALTAAHPQ 209


>gi|240142188|ref|YP_002966698.1| putative Exonuclease [Methylobacterium extorquens AM1]
 gi|240012132|gb|ACS43357.1| putative Exonuclease [Methylobacterium extorquens AM1]
          Length = 190

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 54/194 (27%), Gaps = 28/194 (14%)

Query: 8   YDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +D ET G              R  +   V         ++   F  +P    +P  E   
Sbjct: 5   FDTETTGTPAPGLPLRHPRQPRIVEIGCVLYYPDGAVADTFRTFL-RPDGFTIP-MEMRD 62

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT   A R+G+  AE   R+ +F +      +  + + FD             D + 
Sbjct: 63  LHGITVSAARREGLPAAEAFGRLKEFLAGAGRIAV--HFVPFDATMVAIEIAHGAPDPFG 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
              +   +       +R     + D                +  A   G      H A  
Sbjct: 121 PGREFACTSAAAGLAVRGEGHLALD----------------EACAGILGRPPRRHHRALP 164

Query: 180 DVYATLALVWLIRE 193
           D    + L   +  
Sbjct: 165 DALDAMDLAIALER 178


>gi|228473352|ref|ZP_04058106.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
 gi|228275254|gb|EEK14052.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
          Length = 164

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 54/192 (28%), Gaps = 28/192 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N FV  D+ET   +           V V    E +++      KPA +Y   P    + 
Sbjct: 1   MNTFVALDFET--ANQYRSSVCSIGLVFV-ENNEIVDTYYQLI-KPAPNY-YSPFCTQVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++     +  +   E  + I           +  +N  FD+   R +        +   
Sbjct: 56  GLSQYDTEKAPL-FPEVWKEILPKIKD---LPLVAHNSMFDEGCLREVLAYYALPQHTNP 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                              F               + KL  ++   G +    H A AD 
Sbjct: 112 -------------------FFCTLRAARKSLPQLVNHKLDTVSAYFGFDLKQHHHALADA 152

Query: 182 YATLALVWLIRE 193
            A   +   + +
Sbjct: 153 EACAHIALELFK 164


>gi|225022753|ref|ZP_03711945.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944474|gb|EEG25683.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 232

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 44/187 (23%), Gaps = 30/187 (16%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET   +    R    A V +D         +               A  + GIT + 
Sbjct: 18  FDLETTSANPFEARIVTSALVHIDSGG---AHPQELLA--DPGVPIPEAATKVHGITTEY 72

Query: 68  ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A   G   A+                  +I YN                        +  
Sbjct: 73  AREHGRPHADVLAETIATIKKAWADGYTLIVYNASYDLTVLHSLEPGFLITGPVYDPY-- 130

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D +   Y                    L  L     +   NAH+A +D  A 
Sbjct: 131 ------VMDKLLDPY--------------RRGKRTLTALCEEYQVRLENAHEATSDALAA 170

Query: 185 LALVWLI 191
             + W  
Sbjct: 171 ARIAWKQ 177


>gi|317013348|gb|ADU83956.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           Lithuania75]
          Length = 287

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPIKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPK 260


>gi|218295556|ref|ZP_03496369.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
 gi|218244188|gb|EED10714.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
          Length = 247

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 55/189 (29%), Gaps = 29/189 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G    L+   + A VR++ +         F         P P    +TGIT 
Sbjct: 74  VVLDLETTGLAPGLNEIIEVALVRLEGERRV-----AFQSLARPRRPPSPFIQRLTGITL 128

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++  +   +E E   R +          +   N  FD  + R        +         
Sbjct: 129 EELEKAPPLE-EVLFRAYPLLE---GATLVIQNASFDLGFLRPALGELGLE--------- 175

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                                       G   + L  L+    +     H A  DV  TL
Sbjct: 176 -----------LENPVVDSIRLSKRAMRGLRRYGLDALSEVLELAPRAEHRALLDVERTL 224

Query: 186 ALVWLIREK 194
           A+V+ +   
Sbjct: 225 AVVYEVYYM 233


>gi|269139030|ref|YP_003295731.1| ribonuclease T [Edwardsiella tarda EIB202]
 gi|267984691|gb|ACY84520.1| ribonuclease T [Edwardsiella tarda EIB202]
 gi|304558963|gb|ADM41627.1| Ribonuclease T [Edwardsiella tarda FL6-60]
          Length = 254

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A V  R++     + +    F   P +  +  PEA+   G
Sbjct: 53  VVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHITPFEGAVLSPEALAFNG 112

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E      I +           N  ++  +N  FD  +      R    
Sbjct: 113 IDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAERAGLK 172

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    L+     +   AH 
Sbjct: 173 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LSAEIPFDSAQAHS 215

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 216 ALYDTQQTATLFCELVNR 233


>gi|325134669|gb|EGC57309.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399]
          Length = 244

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MIQRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRRQ 176


>gi|190573031|ref|YP_001970876.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           K279a]
 gi|190010953|emb|CAQ44562.1| putative DNA polymerase III, epsilon chain [Stenotrophomonas
           maltophilia K279a]
          Length = 243

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V     +++  +   +      D   +  A  +TG+T
Sbjct: 4   IILDTETTGLEWKKGNRIVEIGCV---ELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          EF++   +F +  +   +  +N  FD  +  N    +          +
Sbjct: 61  LEFLDDKP----EFAQIADEFLAFIDGAELIIHNAAFDLGFLDNEL--SLLGPQYGKITD 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L + R  +    +               L  L    G++  H   H    D  
Sbjct: 115 RCTVIDTLAMARERFPGQRN--------------SLDALCKRLGVDNSHRALHGGLLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILGDVYIALTSGQEEI 176


>gi|311740580|ref|ZP_07714407.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304100|gb|EFQ80176.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 223

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 56/200 (28%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + +D ET   +    R    A VR+D +  +                   EA  + GIT 
Sbjct: 9   LAFDLETTSANPKEARIVTSALVRIDGRDVQKVEHLA-----DPGIEIPQEATNVHGITT 63

Query: 66  QKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +KA  +G    E  +   +           +I YN                         
Sbjct: 64  EKARAEGRPHEEVLKDTIEAIKAAWEDGLTLIVYNAAFDLTVL----------------- 106

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +    + +   +   Y       +W           L  +    G+E  NAH+A AD  
Sbjct: 107 RSLTGDFTVTGPVYDPYVIDRVSDKW-----RKGKRTLGAVCEHYGVELGNAHEATADAL 161

Query: 183 ATLALVWLIREKKPKLFEYL 202
           A   + W    +       +
Sbjct: 162 AAARVAWKQVRQHYPNLAQM 181


>gi|270004806|gb|EFA01254.1| three prime repair exonuclease [Tribolium castaneum]
          Length = 232

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 59/204 (28%), Gaps = 22/204 (10%)

Query: 3   NHFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIESTEVFFCKP-----------A 48
             FV +D ET G         R  +F  V V      I       CK             
Sbjct: 5   KTFVFFDLETTGLPKFEENRTRITEFCAVAVRADH--IGLQTAQKCKLPRVQSKLSLCFN 62

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYS 106
                 P+A  +TG++ +         ++    I  +   +    C++ +N   FD    
Sbjct: 63  PARAICPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLDVNEKPICLVAHNGNEFDFPIL 122

Query: 107 RNIFYRNFYD-SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA- 164
           R        +        +    +  +D +        +           TS+ L  +  
Sbjct: 123 RAEIENTGENLPEDILCLDSIIAFKEIDTLEGGAVI--NQPNEIKIRKIDTSYNLGHVFK 180

Query: 165 LANGIEHVNAHDAKADVYATLALV 188
                  +NAH A+ DV   LA  
Sbjct: 181 RRLSKRPLNAHGAEGDVNMLLACA 204


>gi|325676987|ref|ZP_08156658.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707]
 gi|325552149|gb|EGD21840.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707]
          Length = 228

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 56/195 (28%), Gaps = 23/195 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D ET GRD    R    + V V  +  +                   +A  + GI+
Sbjct: 9   ICAFDLETTGRDPLSARIVTGSVVTVGGEGHR-----SRNWIVDPGVEIPVDAAAVHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
             +A   G   A   R I      +     ++   N  +D         R  +       
Sbjct: 64  TAQARERGQDYASGYREIRSALTDAWAAGHVVVAFNAAYDLTVLDAEGRRLGWPP----- 118

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                      ++   Y    +  +     D      L  L    G+    AH+A++D  
Sbjct: 119 ------LSGYGLVVDPYVIDREMDR-----DRRGKRTLGALCEHYGVVLAAAHEAESDAL 167

Query: 183 ATLALVWLIREKKPK 197
           A   L  ++  + P 
Sbjct: 168 AAAELARILPRRFPH 182


>gi|253688762|ref|YP_003017952.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755340|gb|ACT13416.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 223

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 28/219 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D+    + + T  F  +P +  + +P A+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKEQNCNRAIIVAHNATFDHSFMMAAAERCSLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +      +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ITAGIAFDSSQAHS 182

Query: 177 AKADVYATLALVWLIREK--KPKLFEYLYDYRNKNQLRK 213
           A  D   T  L   +  +  +   +    +  +   +  
Sbjct: 183 ALYDTNQTALLFCELVNRWKRLGGWPIALEENSLEDVSA 221


>gi|297155821|gb|ADI05533.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 241

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 60/190 (31%), Gaps = 18/190 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V            EV     +        A  I G+T   
Sbjct: 12  FDTETTGIDVEQDRIVSAALVVQRGAGSL---PEVRRWLVSPGIPVPEAASAIHGLTDSH 68

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             R G   A     + +  +      T ++  N   FD         R+           
Sbjct: 69  LQRHGRWPAPVVDEVARALAEQAARGTPVVVMNAP-FDLTLLDRELKRH----------- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N+       +R++    P  +             L DL    G+E   AHDA AD  A+
Sbjct: 117 RNASLSTYVSLRSLTVLDPRVLDKHLDRYRKGRRTLTDLCAHYGVELTGAHDAAADATAS 176

Query: 185 LALVWLIREK 194
           L +V  +  +
Sbjct: 177 LEVVRAVGRR 186


>gi|301066020|ref|YP_003788043.1| DNA polymerase III subunit epsilon [Lactobacillus casei str. Zhang]
 gi|300438427|gb|ADK18193.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei str. Zhang]
          Length = 180

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 28/205 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D+ET   +         A V V +  + ++S              D + + I GIT
Sbjct: 3   FIAMDFET--ANRKRASACSLALVVVQQN-KVVDSFYTL---INPQMQFDAQNIHIHGIT 56

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          +    I  F       I+  +N  FD    R    R            
Sbjct: 57  PEMVQDQP-TFDQVWPHIQMF--YTPGRIVTAHNAPFDVSVMRLTLDRYGI--------- 104

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R+ ++D ++    F P             + +L  ++ A  I   + H+A AD YA 
Sbjct: 105 AAPRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALHIPLEHHHNALADSYAC 154

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
             ++    E   +         +K 
Sbjct: 155 ARILIAENEHFGEARTKSMMKLSKA 179


>gi|306823007|ref|ZP_07456383.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC
           27679]
 gi|304553639|gb|EFM41550.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC
           27679]
          Length = 186

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/198 (10%), Positives = 46/198 (23%), Gaps = 23/198 (11%)

Query: 8   YDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
            D ET G          +   + V     +      F                +TGI+  
Sbjct: 2   LDTETTGLHPEEGATIIEIGALLVTP-GNENARP-RFEQLVDPQRPLPEFISRLTGISDG 59

Query: 67  KALRDGVVEAEFS---RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                   +A      + +   +       +  +N  FD  +       +  D+  +   
Sbjct: 60  MLRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDAAERAHDPDANEF--- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                            +          +      ++ DL +   I  V  H A +D   
Sbjct: 117 --------------DCRWLCTKEMSWELNPQKRHHRVSDLIVDYRIGDVEEHRALSDAIQ 162

Query: 184 TLALVWLIREKKPKLFEY 201
              +   +  +      +
Sbjct: 163 EQMIYRALCREASMRGRW 180


>gi|220936287|ref|YP_002515186.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997597|gb|ACL74199.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. HL-EbGR7]
          Length = 240

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 48/189 (25%), Gaps = 12/189 (6%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G D   D       V  D    +I   E ++            ++    IT  +
Sbjct: 53  LDLETTGMDAERDVIVSIGIVPFD--LRRIRPAEGYYWVVKPPRPLSEASIKFHRITHSE 110

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                    +    + +  +     ++  +    +  +      R      R        
Sbjct: 111 VAAAP----DLDAVLDEVLAALAGRVVVVHYRAIERPFMDAAVMR------RRGERCLFP 160

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D + +                      S +L D     G+   ++H AK D  AT  L
Sbjct: 161 VIDTMSLEARQQRGGLMQRIKGFFGVRPPSIRLADSRARYGLPAYSSHHAKVDAMATAEL 220

Query: 188 VWLIREKKP 196
                 +  
Sbjct: 221 FLAQVARHY 229


>gi|15616860|ref|NP_240073.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11132278|sp|P57337|DPO3E_BUCAI RecName: Full=DNA polymerase III subunit epsilon
 gi|25299956|pir||G84958 DNA-directed DNA polymerase (EC 2.7.7.7) epsilon chain [imported] -
           Buchnera sp. (strain APS)
 gi|10038924|dbj|BAB12959.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 38/226 (16%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEA 57
           +I D ET G +         R  +   V      E I+       F          +  A
Sbjct: 7   IILDTETTGINQTSLPHINHRIIEIGAV------EIIDRCFTGNNFHVYIQPGRSIESGA 60

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + + GIT +  L    +  + +     +       I+  +N  FD  +            
Sbjct: 61  LKVHGITNKFLLDKP-IFKDIADSFLNYIKNS---ILVIHNASFDVGFINQELEILNKKI 116

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAH 175
              ++    S  D L + R ++    +               L  L         H N H
Sbjct: 117 KINTF---CSIIDTLKIARELFPGKKNT--------------LDALCTRYKINKSHRNLH 159

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            A  D Y    L  L+   +  LF        K   +KL     + 
Sbjct: 160 SAIVDSYLLGKLYLLMTGGQDSLFSDNTIN-YKENFKKLKKNIQLK 204


>gi|328469916|gb|EGF40827.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 10329]
          Length = 236

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 19/201 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV  D+ET G D   D+      V +      I S++ ++          PE   I G+
Sbjct: 51  SFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWY--ICHGQFIKPETAQINGL 108

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ   + G+   E   R+ +  +     ++  +    +  +            +   + 
Sbjct: 109 TPQDLAK-GLPLDEGMNRLLERIT---GKVVLAHGCCIEKAFIHA--------YFSSRYQ 156

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +     +D ++    FS  G     +    +S++L DL     +    +H A +D  A
Sbjct: 157 VEDFPAYFVDTLQIEKQFSYAG-----KSGAHSSYQLDDLRRYYHLPGYLSHSAASDALA 211

Query: 184 TLALVWLIREKKPKLFEYLYD 204
              L  +  +K   L +    
Sbjct: 212 CAELFLVQSKKLTALPDVTLR 232


>gi|56460528|ref|YP_155809.1| DNA polymerase III subunit epsilon [Idiomarina loihiensis L2TR]
 gi|56179538|gb|AAV82260.1| 3'-5' exonuclease/DnaQ family enzyme [Idiomarina loihiensis L2TR]
          Length = 248

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 15/191 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET G D         A + +  +       + +  KP        E+V I GIT 
Sbjct: 59  VAVDFETTGLDPEQHGIVSIAAIPMTTERILFSEAKSWVVKPRRSL--TDESVVIHGITH 116

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            +      +E      I +   +    +   +    +  + +       +++ ++   + 
Sbjct: 117 SEIEHAPDLE----SIIDELLELVAGKVWVVHYHGIERPFLQRGIKERLHENIQFPLIDT 172

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADVYAT 184
                                 W         S +L D      +     H+A  D  A 
Sbjct: 173 MEI--------EARFHRKPLSFWQKLLGKKPESIRLADSRTRYNLPFYPPHNALTDALAC 224

Query: 185 LALVWLIREKK 195
             L+       
Sbjct: 225 AELLQAQIAYH 235


>gi|326789827|ref|YP_004307648.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
 gi|326540591|gb|ADZ82450.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
          Length = 305

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 80/257 (31%), Gaps = 36/257 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++V+ D+ET   + +         V+V  +   ++S          +   D     +TGI
Sbjct: 2   NYVVIDFET--ANSSRSSACSLGMVKV-HEGNIVDSFYSL---INPEDDFDLFNTSLTGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E    I  F S     +I  +   FD    RN+  +        S+ 
Sbjct: 56  TQDMVCNSP-TFNELWPDILSFISDH---MIVAHYASFDLSVLRNVLLKYNIPIPTLSY- 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                            +++L  +A    IE  N H A  D +A
Sbjct: 111 ------------------CCTRNLSKKTFPNLINYRLDTVASYLDIEF-NHHHAFEDAHA 151

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T  L+  I  +           +    + K+    + TP  ++  +  +S  ++  I P 
Sbjct: 152 TAVLLNHIFIQNTTSSFEDLHSKLGLTIGKITSS-SYTPSGYIKCVKKSSNLSSKDIVPT 210

Query: 244 A-----WHPRYKDSVIG 255
                  HP Y  +VI 
Sbjct: 211 TSSFDDSHPLYDMTVIF 227


>gi|325103944|ref|YP_004273598.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
 gi|324972792|gb|ADY51776.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
          Length = 315

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 78/225 (34%), Gaps = 28/225 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +      +D E  G ++ +DR  + + ++++    +    EV   +         E   I
Sbjct: 5   LKRPLAFFDLEATGVNLGIDRIVEISILKINVDGSE----EVKTHRINPTIPIPYEVSII 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +    +     + ++ I  F    +  + GYN+ +FD       F +   +    
Sbjct: 61  HGIYDKDIENEP-TFKDLAQEIADFIGDAD--LAGYNSNKFDIPMLMEEFLKAGVN---- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                       D+    +    +      +     ++K          E VNAH A+AD
Sbjct: 114 -----------FDLDNRHFVDVQNIFHQMEQRTLKAAYKF-----YCDKEIVNAHSAEAD 157

Query: 181 VYATLALVW-LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
             AT  ++   +++ +   +E      +K  +  +  + N T L 
Sbjct: 158 TRATYEVLLAQLKKYEGHDWEDRGGKISKPVVNDVPALHNFTNLT 202


>gi|311111764|ref|YP_003982986.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931]
 gi|310943258|gb|ADP39552.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931]
          Length = 230

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 48/178 (26%), Gaps = 24/178 (13%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFITGITP 65
           +D ET G DV   R    + + ++                           A  + GIT 
Sbjct: 11  FDLETTGVDVTTARIVTASLLLLNPDGSVQRAGEWLA-----NPGIEIPEGAASVHGITT 65

Query: 66  QKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + A   G    +    +         +   +   N  +D     +   R           
Sbjct: 66  EYARSHGQPAQQVIWEVAGAIGSLFLDGIPVIAFNAAYDFSVLHHEMLRYNI-------- 117

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                      + A +   P  I          + KL+ L   + +   NAH +KAD 
Sbjct: 118 -------AHGELPAGHILDPYVIHKHVIPRKRGNRKLETLTAEHDVVLENAHTSKADA 168


>gi|315585931|gb|ADU40312.1| DNA polymerase III subunit epsilon [Helicobacter pylori 35A]
          Length = 287

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 58/218 (26%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V      I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPLKHEILEIGAVQVRGGG-IINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 127 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 179

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 180 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 222

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 223 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 260


>gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
           Madrid E]
 gi|6685391|sp|Q9ZCJ9|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon
 gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii]
 gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii Rp22]
          Length = 229

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 26/202 (12%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  +   + +            F+  P  D     EA  I GI+
Sbjct: 7   IILDTETTGLDPQQGHRIVEIGAIEM-VNKVLTGKHFHFYINPERDMPF--EAYKIHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +     +    +F +     I   +N  FD  +  +    +        +  
Sbjct: 64  GEFLKDKPL-FKTIANDFLKFIADSTLII---HNAPFDIKFLNHEL--SLLKRTEIKFLE 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
             +  D L + R ++  +               + L  L     +++     H A  D  
Sbjct: 118 LTNTIDTLVMARNMFPGA--------------RYSLDALCKRFKVDNSGRQLHGALKDAA 163

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
               +   +   +   F+ +  
Sbjct: 164 LLAEVYVALTGGRQSTFKMINK 185


>gi|109948241|ref|YP_665469.1| DNA polymerase III subunit epsilon [Helicobacter acinonychis str.
           Sheeba]
 gi|109715462|emb|CAK00470.1| DNA polymerase III [Helicobacter acinonychis str. Sheeba]
          Length = 282

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 63/218 (28%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V    + I   E     K   DY+ D     +TGI
Sbjct: 68  FSFIDLETTGSCPLKHEILEIGAVQV-SGGKIINRFETLVKVKSVPDYISD-----LTGI 121

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 122 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 174

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               +   LD+ R                     + L  L    G     +H A AD  A
Sbjct: 175 ---LKLCTLDLSRRAILSM--------------RYSLSFLKELLGFGIEVSHRAYADALA 217

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  ++  
Sbjct: 218 SYKLFEICLLNLPNYVKTTIDLIDFSKCANTLIKRSPR 255


>gi|256112395|ref|ZP_05453316.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
          str. Ether]
 gi|265993832|ref|ZP_06106389.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
          str. Ether]
 gi|262764813|gb|EEZ10734.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
          str. Ether]
          Length = 80

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
          +++D ET G +   DR  +  GV +  ++    +   F           P+A+ + GI+ 
Sbjct: 4  IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFIN--PQGRQVHPDALAVHGISN 61

Query: 66 QKALRDGVVEAEFSRRIHQF 85
          ++ L   V  AE      +F
Sbjct: 62 EQLLDKPV-FAEILDEFLEF 80


>gi|188997445|ref|YP_001931696.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188932512|gb|ACD67142.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 203

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 55/192 (28%), Gaps = 20/192 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V +D ET G +  +D     A V++      +     F      D   + + + I G
Sbjct: 32  NEYVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNE--RFNVIVKPDREINEDVIKIHG 89

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +  +     G+   E   R   F    +  ++GY         ++     +         
Sbjct: 90  LRKKDL-ESGIPIEEAVDRFVHFI--GSRPLVGYYLEFDVAMINKYFKKLSG-------- 138

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L   +   +      +      G    +   +     I     HDA  D  
Sbjct: 139 -------TTLPNKQIEVSALYYDYKIGLIPQGFVDLRFDSILKDLDIPTFGKHDALNDAI 191

Query: 183 ATLALVWLIREK 194
            T  +   ++ K
Sbjct: 192 MTALIFLKLKNK 203


>gi|34557013|ref|NP_906828.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM
           1740]
 gi|34482728|emb|CAE09728.1| DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE [Wolinella
           succinogenes]
          Length = 203

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 58/195 (29%), Gaps = 20/195 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +N  V +D ET G D   D     A V++             F KP  +   D  ++ I 
Sbjct: 28  SNELVAFDCETTGLDPKKDEIISLAAVKIRDNKILTSEKLQLFVKPKGEINID--SIKIH 85

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I        G+   E + R   F    N  ++GY        +   +  R  +     +
Sbjct: 86  HIRACDVSN-GITSEEAALRFLDFL--GNRPLVGYY-----LEFDVALINRIIHPLLGIT 137

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     +              +     +G    +L+ +     +  +  HDA  D 
Sbjct: 138 LPQKMIEVSAI----------YYDKKIGLIPEGHVDLRLRSILRDLKLPELTQHDALGDA 187

Query: 182 YATLALVWLIREKKP 196
             +  +   + + + 
Sbjct: 188 ITSALIYLKLTQNQK 202


>gi|87118535|ref|ZP_01074434.1| exonuclease [Marinomonas sp. MED121]
 gi|86166169|gb|EAQ67435.1| exonuclease [Marinomonas sp. MED121]
          Length = 230

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 55/191 (28%), Gaps = 19/191 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++ D ET G D   DR      V + +                D+   D + V I  IT
Sbjct: 38  YLVLDMETTGLDATKDRVISLGWVLI-KNGAI--KLSSARHILLDNGPVDEKTVAIHMIT 94

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q     G   +   R + Q     +  ++ ++      +  +                 
Sbjct: 95  DQDISELGRNPSVAMRYLRQLL--LDKVLVVHHAPIEQAFLEKLWQAHKLNP-------- 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 L  VM    A   D          + +F+L +     G+     HDA  D  AT
Sbjct: 145 ------LTQVMLDTLAMERDTQMRKQYMLTSDAFRLGECRKRYGLPDYQGHDALGDAQAT 198

Query: 185 LALVWLIREKK 195
             L+       
Sbjct: 199 AELLLAQLNHA 209


>gi|260769996|ref|ZP_05878929.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260615334|gb|EEX40520.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|315182520|gb|ADT89433.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218]
          Length = 238

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 19/189 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            + +D+ET G D   D+      V +      + ++E  F +  +      ++  I  IT
Sbjct: 53  LLAFDFETSGVDAGHDQILSLGWVGMTLDQIDVAASEEIFVRHPEFV--TADSAVINHIT 110

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ  L  GV   E   R+    +      + +       + ++ +  R   + +   W  
Sbjct: 111 PQ-VLAHGVTLDEAMDRLFGQLA--GKIALVHGACIERAFVAQYMRERFAIEHFPCVW-- 165

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L +           + +  + +  TSF+L D+     +   NAH A  D  AT
Sbjct: 166 ----VDTLQI--------EKQMTYAGKTECGTSFQLNDVRTRYALPQYNAHSAAIDALAT 213

Query: 185 LALVWLIRE 193
             L     +
Sbjct: 214 AELFTAQMK 222


>gi|269140407|ref|YP_003297108.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202]
 gi|267986068|gb|ACY85897.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202]
          Length = 199

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 53/190 (27%), Gaps = 23/190 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G           A +  D+    +                      I GIT +
Sbjct: 32  ILDTETTGV-KENAEIVSAAII--DQDGTVL--FHSLIKPVNP---ITEITTAIHGITNE 83

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    AE    I +     NT  +   N +FD         ++       +     
Sbjct: 84  MVAEKP-TWAEVHDEIARIL---NTAPLVVYNAQFDMRMMAQSAAKHGLPPIVVN----- 134

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKADVYATL 185
                 +V  A+ A++    QW           L        ++  N  H A  DV  TL
Sbjct: 135 -----TEVNCAMEAYAHFYGQWNEEHQSYRWQSLSMAMFQQDVDDDNIPHSALGDVNRTL 189

Query: 186 ALVWLIREKK 195
           AL+  + +  
Sbjct: 190 ALMRSMVKAD 199


>gi|260902236|ref|ZP_05910631.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308110524|gb|EFO48064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
          Length = 236

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 19/201 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV  D+ET G D   D+      V +      I S++ ++          PE   I G+
Sbjct: 51  SFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWY--ICHGQFIKPETAQINGL 108

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TPQ   + G+   E   R+ +  +     ++  +    +  +            +   + 
Sbjct: 109 TPQDLAK-GLPLDEGMNRLLERIT---GKVVLAHGCCIEKAFIHA--------YFSSRYQ 156

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             +     +D ++    FS  G     +    +S++L DL     +    +H A +D  A
Sbjct: 157 VEDFPAYFIDTLQIEKQFSYAG-----KSGAHSSYQLDDLRRYYHLPGYLSHSAASDALA 211

Query: 184 TLALVWLIREKKPKLFEYLYD 204
              L  +  +K   L +    
Sbjct: 212 CAELFLVQSKKLTALPDVTLR 232


>gi|302541136|ref|ZP_07293478.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458754|gb|EFL21847.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 241

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 47/166 (28%), Gaps = 18/166 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V            EV     +        A  I G+T   
Sbjct: 12  FDTETTGIDVEHDRIVSAALVVQRGAGSL---PEVRRWLVSPGIPVPQAATEIHGLTDTH 68

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + G   A     + +  +      T ++  N   FD         R+           
Sbjct: 69  LQQHGRWPAPVMDEVARALAEQTARGTPVVVMNAP-FDLTLLDRELKRH----------- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
            N+       +R++    P  +             L DL    G+E
Sbjct: 117 RNATLATYLSLRSLSVLDPRVLDKHLDRYRKGRRTLTDLCAHYGVE 162


>gi|72381899|ref|YP_291254.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. NATL2A]
 gi|72001749|gb|AAZ57551.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str.
           NATL2A]
          Length = 292

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 29/192 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             + +I D ET G D   D   +   +  + +   + + + F        + +  A  I 
Sbjct: 65  PENILILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSF---LLPVEINN--AEKIN 119

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I P +  R     +E  +       V N  +I  +N  FD                   
Sbjct: 120 NI-PAEITRLPQPLSEAIKYFESLVRVSN--VIVAHNSEFDK------------------ 158

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L  +   +  S D I WP+     T   ++DLALA G+   NAH A  D 
Sbjct: 159 ---KWFGLKKLPQIEKPWICSMDDITWPADRQLKTRPSVRDLALAYGVPVWNAHRALTDC 215

Query: 182 YATLALVWLIRE 193
                +     E
Sbjct: 216 IYLAEVFIRCSE 227


>gi|312867475|ref|ZP_07727684.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           parasanguinis F0405]
 gi|311097176|gb|EFQ55411.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           parasanguinis F0405]
          Length = 817

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/394 (14%), Positives = 107/394 (27%), Gaps = 46/394 (11%)

Query: 2   TNHFVIYDYETF--GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
              + I D E    G +    +  Q   V V       +S E            D     
Sbjct: 5   KRKYAIVDLEATSAGSNA---KIIQVGIVIV-EDGVITQSYET---DVNPHERLDEHIKQ 57

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TG+T  +  +      EF++   + F +    +   +N++FD        +   ++   
Sbjct: 58  LTGLTDARLRKAP----EFAQVAKEIFELIEDAVFVAHNVKFDANLLAEALFWEGFE--- 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                   R D +++ +  Y                  + L  LA    IE  +AH A A
Sbjct: 111 ----LTTPRIDTVELSQIFYPTLE-------------RYNLGALAAELQIELHHAHSALA 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK-NQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           D  AT  L+  +REK   L   L +                +   +  S +F  S     
Sbjct: 154 DAMATAQLLLKVREKIASLPRGLIENLLSMADCLIYESRLLIEDALEDSSLFLPSHLVEI 213

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
                  H  Y         S  +    +L+   L    +    E    +   + +    
Sbjct: 214 -------HGLYLRKQQQFLESRHLSEQFELNMQLLGMEAYPEQSEFAAYIEESLHQ---- 262

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
             P  +       + +        +  + + +      L+D+      K      Q    
Sbjct: 263 PLPSFIEAPTGIGKTYAYLLTLLAKTSKRILVSVPTKILQDQIMKKEGKTIQELFQIPFH 322

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFS 392
            L       +        L+T  +          
Sbjct: 323 SLKSPK-DYIQLDKFYETLQTDSDNRMIRRFKMQ 355


>gi|300933650|ref|ZP_07148906.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM
           45100]
          Length = 226

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 30/172 (17%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A + +  +  + +  E+             +A  + GIT + 
Sbjct: 16  FDLETTGTDPKTCRIVTSAMISI--EGRERKDQELLA---DPGVEIPEQATAVHGITTEY 70

Query: 68  ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A  +G    E   +  +           ++ YN                       S+  
Sbjct: 71  ARENGSPHDEVLAQTIETIREAWQRGATLVVYNAPYDLSVLRALE----------PSFTV 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +D L V RA+  +                 +L+++    GIE  NAH+
Sbjct: 121 DGLVFDPLVVDRAMDPYR------------KGKRRLENVCEHYGIELTNAHE 160


>gi|294788746|ref|ZP_06753987.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
           29453]
 gi|294483228|gb|EFG30914.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
           29453]
          Length = 272

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 31/222 (13%)

Query: 6   VIYDYETFGRDVAL----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +I D ET G         DR  +FAG+ +    +                    EA  + 
Sbjct: 10  IILDTETTGLYANAAENPDRLIEFAGLEM-MNRQLTGR--NLHLLIHPQREISEEATAVH 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            IT  + +    + A+ +++I  F       I   +N +FD  +    F R         
Sbjct: 67  NITLSQLVDKP-IFAQVAQQIFDFIKGAELII---HNAKFDVGFLNAEFARVGLP----- 117

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
             N  +  ++ D +                        L  L    G++      H A  
Sbjct: 118 --NVETICEITDTLEMAKNLYHGQKN-----------SLDALCNRLGVDRSKRVFHGALI 164

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           D      +   +   +  L     D    +++ +++      
Sbjct: 165 DCELLSEVYLGMTRGQFSLMADWEDEDENSEINQIVVQHTFQ 206


>gi|148358915|ref|YP_001250122.1| DNA polymerase III subunit epsilon [Legionella pneumophila str.
           Corby]
 gi|296106963|ref|YP_003618663.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280688|gb|ABQ54776.1| DNA polymerase III, epsilon subunit [Legionella pneumophila str.
           Corby]
 gi|295648864|gb|ADG24711.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
           Alcoy]
          Length = 233

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 61/215 (28%), Gaps = 33/215 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           VI D ET G       R  +   +      E I+       F          D  A  + 
Sbjct: 4   VILDTETTGIGPEQGHRVIEIGCI------ELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +      +   +      QF       I   +N  FD  +  +         +  +
Sbjct: 58  GISTEFLQDKPL-FQDIVTEFIQFVEGSELII---HNAPFDVGFLNSELKHV---KWNKT 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
            ++     D L + R  +    +               L  L     I+H N   H A  
Sbjct: 111 LEDYCRILDTLILAREKHPGQRN--------------SLDALCKRYEIDHFNRELHGALL 156

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
           D      +   +   +  LF  +    + ++++  
Sbjct: 157 DAEILAYVYLAMTGGQSSLFTEVESSMSHSKIKTQ 191


>gi|319955911|ref|YP_004167174.1| DNA polymerase iii, epsilon subunit [Nitratifractor salsuginis DSM
           16511]
 gi|319418315|gb|ADV45425.1| DNA polymerase III, epsilon subunit [Nitratifractor salsuginis DSM
           16511]
          Length = 272

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 54/181 (29%), Gaps = 31/181 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFI 60
              + I D ET G      +  +   V + ++ + I+  E F  C    +++       +
Sbjct: 70  MQEYCIIDIETNGSKPGRSQVIEIGAVML-KEGKIIDRLETFVACAYLPEHII-----KL 123

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI P           E   ++  F       +   +N  FD  +    F R        
Sbjct: 124 TGIEPTDLAEAP-SRKEALTQLRNFM---GDAVFTAHNAGFDHGFLNASFQRFGLGPI-- 177

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
               GN     +D+ R  +               +  + L  L  +  +     H A  D
Sbjct: 178 ----GNPVLCTIDLARRTF--------------ESERYGLAYLNESLDLGMQAHHRAYND 219

Query: 181 V 181
            
Sbjct: 220 A 220


>gi|253989411|ref|YP_003040767.1| ribonuclease T [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780861|emb|CAQ84023.1| ribonuclease T [Photorhabdus asymbiotica]
          Length = 217

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 62/200 (31%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D +     + +  F  +P +    +P A+  TG
Sbjct: 20  VVIDVETGGFNAKTDALLEIAAITLKMDDEGWITPDESLHFHIEPFEGANLEPAALEFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKNSHCNRAIIVAHNANFDHGFVMAAAERARLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
                  N    +   D            I             L    +  G+   N  A
Sbjct: 140 ------RNPFHPFATFDTAALGGLVLGQTI-------------LAKACITAGVSFDNNQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 181 HSALYDTNRTAELFCEMVNR 200


>gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 38/226 (16%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEA 57
           +I D ET G +         R  +   V      E I+       F          +  A
Sbjct: 7   IILDTETTGINQTSLPHINHRIIEIGAV------EIIDRCFTGNNFHVYIQPGRSIESGA 60

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + + GIT +  L    +  + +     +       I+  +N  FD  +            
Sbjct: 61  LKVHGITNKFLLDKP-IFKDIADSFLNYIKNS---ILVIHNASFDIGFINQELEILNKKI 116

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAH 175
              ++    S  D L + R ++    +               L  L         H N H
Sbjct: 117 KINTF---CSIIDTLKMARKLFPGKKNT--------------LDALCTRYKINKSHRNLH 159

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            A  D Y    L  L+   +  LF        K   +KL     + 
Sbjct: 160 SAIVDSYLLGKLYLLMTGGQDSLFSDNTIN-YKENFKKLKKNIQLK 204


>gi|254462819|ref|ZP_05076235.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206679408|gb|EDZ43895.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 224

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 47/183 (25%), Gaps = 29/183 (15%)

Query: 9   DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           D ET G D    DR  +   V       ++ +   +      +     +A  + G+    
Sbjct: 2   DTETTGFDPQQGDRIVEIGAV---ELINQMPTGRTYHQYINPERAMPDDAFQVHGLGDDF 58

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                V   + ++    F        +  +N  FD  +                      
Sbjct: 59  LRDKPV-FKQIAQEFLDFVKD---DTMVIHNASFDMKFLNAELGWLNMKQLPMEQA---- 110

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATL 185
             D L + R  +  SP                L  L     I++ N   H A  D     
Sbjct: 111 -LDTLAIARKRFPGSPA--------------SLDALCRRFNIDNSNRTLHGALLDSEILA 155

Query: 186 ALV 188
            + 
Sbjct: 156 EVY 158


>gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5]
 gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
 gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5]
 gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
          Length = 229

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 61/217 (28%), Gaps = 26/217 (11%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  +   + +            F+  P  D     EA  I GI+
Sbjct: 7   IILDTETTGLDPRQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPF--EAYRIHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +     +    +F S     I   +N  FD  +  +    +           
Sbjct: 64  GEFLKDKPLFHT-IADDFLEFISDSKLII---HNAPFDIKFLNHEL--SLLKRTDIKLLE 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
             +  D L + R+I+                + + L  L     +++     H A  D  
Sbjct: 118 LANTIDTLVMARSIFPG--------------SKYNLDALCKRFKVDNSGRQLHGALKDAA 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
               +   +   +   F+ +      N L        
Sbjct: 164 LLAEVYVELMGGRQSAFKMVDKSAVINNLATNQVNNK 200


>gi|206890301|ref|YP_002247886.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742239|gb|ACI21296.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 230

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 17/190 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D E  G +   D       +++  +  KI         P+       E++ I  IT
Sbjct: 24  FVVVDTELTGLNEFRDNIIAIGAIKMKGRTIKIGDIFYRTVSPST-KKFRKESIMIHEIT 82

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P +  +   +E      + +F      C++  + +  D  + +     N  + +      
Sbjct: 83  PSELEKCPQIE----PILREFIKFSKNCLVVGHCVDIDLTFLKKEIRNNLREIFE----- 133

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + + +        +     D +    L+D+AL+  IE    HDA +D + T
Sbjct: 134 -PFSIDTLLIYKWL------IKKEILPSDFSNKNSLEDIALSLDIEPKELHDALSDAFIT 186

Query: 185 LALVWLIREK 194
             +   +   
Sbjct: 187 AQIFQRLLAY 196


>gi|254466659|ref|ZP_05080070.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I]
 gi|206687567|gb|EDZ48049.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I]
          Length = 241

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 54/206 (26%), Gaps = 34/206 (16%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +       ++   +      +     EA  + GI 
Sbjct: 4   IVLDTETTGFDPFSGDRIVEIGAVELYNHMPTGKTFHEY---INPERSMPAEAFSVHGIG 60

Query: 65  PQKALRDGVVEAE---------FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           P         E           F++   +F        +  +N  FD  +          
Sbjct: 61  PDLLEPPQKPEPGAVTLRDKPVFAKIGRKFLDFVQDSRLVIHNASFDMKFLNAELDWMGL 120

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174
                         D L + R  +  SP                L  L     I++ N  
Sbjct: 121 PKLPMDQA-----LDTLAMARKRFPGSPAT--------------LDALCRRFNIDNTNRT 161

Query: 175 -HDAKADVYATLALVWLIREKKPKLF 199
            H A  D      +   +   +   F
Sbjct: 162 LHGALLDSEILADVYLELIGGRQPDF 187


>gi|160943710|ref|ZP_02090941.1| hypothetical protein FAEPRAM212_01204 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444884|gb|EDP21887.1| hypothetical protein FAEPRAM212_01204 [Faecalibacterium prausnitzii
           M21/2]
          Length = 330

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 60/247 (24%), Gaps = 34/247 (13%)

Query: 1   MTNHFVIYDYETF-GRDVA-----------LDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
           M  + V++D E   G                    +   V++D     +++  +   +P 
Sbjct: 1   MPRNLVLFDLEWNIGYQPYTFNYHGVQQTLRGEIVEIGAVKIDEDANVLDTFSIHL-RPR 59

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                      +TG+T       G       + + +F                D    + 
Sbjct: 60  IFRKLQHHIAKVTGLTQADL-DRGEP---IVQGLRRFMQWCGPDAEFAEWGLDDVPVLKQ 115

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
             +    D  R +                ++                    L+ +    G
Sbjct: 116 NLFLCNLDESRPT----------------VWYDLQQVFLREHPRKEGEGMTLESVVTRMG 159

Query: 169 IEHVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
           +      HDA +D   T  +  L+  +         D   +  L +         + H  
Sbjct: 160 VPMERPFHDALSDTLYTADVCRLLDLRAGLAAYPTEDEALRQSLCQTPGDYRDFTVFHGY 219

Query: 228 GMFGASR 234
               A R
Sbjct: 220 VEQYAWR 226


>gi|37526494|ref|NP_929838.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|54036329|sp|Q7N3W0|RNT_PHOLL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|36785925|emb|CAE14977.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 217

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 63/212 (29%), Gaps = 30/212 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V ++   E       +  F  +P +    +P A+  TG
Sbjct: 20  VVIDVETGGFNAKTDALLEIAAVTLEMDGEGWLTPGESLHFHIEPFEGANLEPAALEFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPLNPLRGAVSEYEALHAIFKMVRKGIKNNHCNRAIIVAHNANFDHSFVMAATERTGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
                  N    +   D            I             L    +  GI   N  A
Sbjct: 140 ------RNPFHPFATFDTAALGGLVLGQTI-------------LAKACITAGIPFDNNQA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYR 206
           H A  D   T  L   +  +  +L  +     
Sbjct: 181 HSALYDTDRTAELFCEMVNRWKQLGGWPLTTT 212


>gi|124025389|ref|YP_001014505.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. NATL1A]
 gi|123960457|gb|ABM75240.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. NATL1A]
          Length = 292

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 29/192 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             + +I D ET G D   D   +   +  + +   + + + F        + +  A  I 
Sbjct: 65  PENILILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSF---LLPVEINN--AEKIN 119

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I P +  R     +E  +       V N  +I  +N  FD                   
Sbjct: 120 NI-PAEITRLPQPLSEAIKYFESLVRVSN--VIVAHNAEFDK------------------ 158

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L  +   +  S D I WP+     T   ++DLALA G+   NAH A  D 
Sbjct: 159 ---KWFGLKKLPQIEKPWICSMDDITWPADRQLKTRPSVRDLALAYGVPVWNAHRALTDC 215

Query: 182 YATLALVWLIRE 193
                +     E
Sbjct: 216 IYLAEVFIRCTE 227


>gi|319760362|ref|YP_004124300.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039076|gb|ADV33626.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 251

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 63/207 (30%), Gaps = 36/207 (17%)

Query: 2   TNHFVIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLP 53
           T  +VI D ET G +         +  +   V      E I  +     F      +   
Sbjct: 5   TTRYVILDTETTGMNKFGIHYEGHKIIEIGAV------EIINRSLTKNKFHVYLNPNRPV 58

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           D EA  I GI+ +      V  ++ S +   F     + ++ +N      + +  +   N
Sbjct: 59  DSEAFKIHGISDRFLKDKPV-FSDISNKFLSFI--CGSNLVIHNASFDVGFLNFELRETN 115

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                  ++    S  D L + R ++    +               L  L     I+   
Sbjct: 116 LKYKTLETY---CSIIDSLKLARNLFPGQRN--------------SLDALCERYFIDISQ 158

Query: 174 A--HDAKADVYATLALVWLIREKKPKL 198
              H+A  D      +   +   + ++
Sbjct: 159 RNLHNALIDAQILAYVFLAMTGGQTEM 185


>gi|302561692|ref|ZP_07314034.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479310|gb|EFL42403.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 241

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 59/191 (30%), Gaps = 20/191 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  D          V              A  + G+T + 
Sbjct: 12  FDTETTGVDVENDRIVSAALVVQDASG---ARPRVTRWLVNPGVPVPAAATEVHGLTEEH 68

Query: 68  ALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             R+G        E +  + +  +V    ++   N  FD         R+          
Sbjct: 69  LQRNGRWPAPVMYEMAEALAEQAAVGRPLVVM--NAPFDLTLLDRELRRH--------RA 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +   RW     +R +  +  D               L DL    G+    AH+A AD  A
Sbjct: 119 SSLGRWLERSPLRVLDPWVLDKH---LDRYRKGRRTLTDLCAHYGVPLEGAHEAAADAVA 175

Query: 184 TLALVWLIREK 194
            L +   +  +
Sbjct: 176 ALEVTRAVGRR 186


>gi|113955550|ref|YP_730762.1| DNA polymerase III subunit epsilon [Synechococcus sp. CC9311]
 gi|113882901|gb|ABI47859.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp.
           CC9311]
          Length = 263

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 53/190 (27%), Gaps = 29/190 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +I D ET G D       +   +  D    +I +     C      +    A  I  I
Sbjct: 39  TLLIIDTETSGLDPEAHHCLEIGAILFDVSSRQILAQMS--CLLP---VESNAAEAINRI 93

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P    R             +     +  ++  +N  FD  +                  
Sbjct: 94  -PAAVTRLPQPWEPGLHYFQELLKAAD--LLVAHNAAFDQQWFGRG-------------- 136

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L      +  S + ++WP      +   ++DLALA  I    AH A +D   
Sbjct: 137 -------HLPATDLPWLCSMEDMRWPKEKQLRSRPSVRDLALAYEIPVWAAHRALSDCIY 189

Query: 184 TLALVWLIRE 193
              +     +
Sbjct: 190 LAEVFRRCDQ 199


>gi|88797051|ref|ZP_01112641.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297]
 gi|88779920|gb|EAR11105.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297]
          Length = 236

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 51/192 (26%), Gaps = 14/192 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET G +   D       V    Q   +     +  +  +      E+V +  IT
Sbjct: 48  FVAVDIETTGLNAEQDDIISIGLVPFTAQRITLAKARHWLVRTRN---LTSESVVVHRIT 104

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                +           + +         +  +    +  + R                 
Sbjct: 105 HSDIAQAPP----LRAVLSEVIPCLQGRQVVVHYRYMEREFFRQSVAG------LHESTW 154

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+ + A +      I          S +L ++     +     H+A  D  AT
Sbjct: 155 LFPVIDTLE-LEAAHLRQKQSIVSRLFKQTLPSLRLPNVRERYNLPAYENHNALTDALAT 213

Query: 185 LALVWLIREKKP 196
             L+     K+ 
Sbjct: 214 AELLQAQVAKQN 225


>gi|307610085|emb|CBW99626.1| hypothetical protein LPW_13941 [Legionella pneumophila 130b]
          Length = 233

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 33/215 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           VI D ET G       R  +   +      E I+       F          D  A  + 
Sbjct: 4   VILDTETTGIGPEQGHRVIEIGCI------ELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +      +   +      QF       I   +N  FD  +  +         +  +
Sbjct: 58  GISTEFLQDKPL-FQDIVTEFIQFVEGSELII---HNAPFDVGFLNSELKHV---KWNKT 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
            ++     D L + R  +    +               L  L     I+H N   H A  
Sbjct: 111 LEDYCRILDTLILAREKHPGQRN--------------SLDALCKRYEIDHFNRELHGALL 156

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
           D      +   +   +  LF  +    ++++++  
Sbjct: 157 DAEILAYVYLAMTGGQSSLFTEVESSFSQSKIKTQ 191


>gi|261400541|ref|ZP_05986666.1| oligoribonuclease [Neisseria lactamica ATCC 23970]
 gi|269209608|gb|EEZ76063.1| oligoribonuclease [Neisseria lactamica ATCC 23970]
          Length = 187

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +DD L   D     
Sbjct: 4   KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDDVLNKMDEWNTA 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 64  THGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|116494505|ref|YP_806239.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|227535524|ref|ZP_03965573.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239631264|ref|ZP_04674295.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|116104655|gb|ABJ69797.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|227186846|gb|EEI66913.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239525729|gb|EEQ64730.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 180

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 28/205 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D+ET   +         A V V +  + ++S              D + + I GIT
Sbjct: 3   FIAMDFET--ANRKRASACSLALVVVQQN-KVVDSFYTL---INPQMQFDAQNIHIHGIT 56

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          +    I  F       I+  +N  FD    R    R            
Sbjct: 57  PEMVQDQP-TFDQVWPHIQMF--YTPGRIVTAHNAPFDVSVMRLTLDRYGI--------- 104

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R+ ++D ++    F P             + +L  ++ A  I   + H+A AD YA 
Sbjct: 105 AAPRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALHIPLEHHHNALADSYAC 154

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
             ++    E   +         +K 
Sbjct: 155 ARILIAENEHFGEARIKSMMKLSKA 179


>gi|293411964|ref|ZP_06654689.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469519|gb|EFF12008.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 185

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 23/196 (11%)

Query: 2   TNHFVI-YDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
               V   D E+ G D +A  +  + A  R   + E     +    +       DP+A  
Sbjct: 1   MTTIVAGIDIESTGLDFLAGHKIIEIAITRY--ELETQRHIDSLEMRFNPRRNIDPKAQA 58

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI+ ++   + ++    +  I  +    +   I +N   FD  + R+ F         
Sbjct: 59  VHGISLEQLAAEPLLSNH-ASEIGAYMGACSA-WIAHNGEAFDIPFIRHEFSGYGVRL-- 114

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                      ++D M +          W + D      +    +L    +H  AH A  
Sbjct: 115 -------PEVPVIDTMLSG--------LWATEDGKRPRLEELAFSLGFIYDHAKAHSALY 159

Query: 180 DVYATLALVWLIREKK 195
           D    +   +  R K 
Sbjct: 160 DTNLMMQCFFKARNKY 175


>gi|269103713|ref|ZP_06156410.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163611|gb|EEZ42107.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 237

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 62/204 (30%), Gaps = 18/204 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++ D+ET G D   D       V + +Q   + +      K        PE   I  IT
Sbjct: 52  YLVLDFETTGFDPEQDDILSVGFVTISQQRIDLSTATELLIK-DSQQKVKPETAIINHIT 110

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +K    GV        +          ++ +  +    + +  +  R         W  
Sbjct: 111 TEKLA-HGVELDCAMAALFNAMK--GKIMVAHGAMIEQRFLNHYLATRYQLPPLPIIW-- 165

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + +++                A  ++L  +   +G+    AH A  D  AT
Sbjct: 166 ----LDTLTIEKSLSIHRQQL--------KANDYRLAQIRQRHGLPAYPAHGAVIDAIAT 213

Query: 185 LALVWLIREKKPKLFEYLYDYRNK 208
             L+ +++               K
Sbjct: 214 AELLLVLQVACFGKKTGTLANWLK 237


>gi|257454169|ref|ZP_05619440.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60]
 gi|257448430|gb|EEV23402.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60]
          Length = 217

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 26/194 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + +D ET G     D+  + A    D     I  T ++      D    P A  + GI P
Sbjct: 50  LFFDTETIGGG-REDQIIEIAF--CDSDRHVIIDTLIYT-----DRTSSPGAFKVHGIYP 101

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            + +       +    I Q        +  YN                            
Sbjct: 102 HELIGKP-TFIDIQPAIVQLLK--GRTLYAYNANFDIRMMR---------------QSGH 143

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
             R   + +      F+    Q+         F L    L  GIEH NAH A+ D  A +
Sbjct: 144 KLRLQQVGIKCLCKQFADFIGQYSPYFKANRYFSLSKACLHFGIEHSNAHRARPDALACV 203

Query: 186 ALVWLIREKKPKLF 199
            +   + +     +
Sbjct: 204 TVWQGMVKSHHWDY 217


>gi|41406411|ref|NP_959247.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254773395|ref|ZP_05214911.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|41394760|gb|AAS02630.1| DnaQ [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 329

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 76/295 (25%), Gaps = 38/295 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D   +  +S             P P    + G+T  
Sbjct: 19  VIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSL---LNPGVDPGP--THVHGLTAA 73

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  + +         +  +N+ FD  +          +    +     
Sbjct: 74  MLEDQPQ-FADIAGDVVEVLR---GRTLVAHNVAFDYAFLAAEAELAGIELPVDT----- 124

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
               ++  +                       +L+ LA   G+     HDA  D      
Sbjct: 125 ----VMCTVELARRLDLGIDN----------LRLETLAAHWGVTQQRPHDAFDDAMVLTG 170

Query: 187 LVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           ++    ++     ++  ++    +      +    + PL  ++               V 
Sbjct: 171 VLASALQRARERDIWLPVHPVTRRRWPNGRVTHDELRPLKVLASRMP--CPYLNPGPYVG 228

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
             P  +   +            +    +L +R+  +       V      V  N 
Sbjct: 229 GRPLVQGMRVAL------AAEVERTHEELVERILHAGLAYSDTVDRETSLVVCND 277


>gi|282864742|ref|ZP_06273796.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
 gi|282560167|gb|EFB65715.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
          Length = 243

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 4/111 (3%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A V V+    +      +            +A  I GI+ ++
Sbjct: 11  FDLETTGTDPLEARIVTAAVVAVESSGGEAAGCRTWLA--DPGVRIPEQASAIHGISSER 68

Query: 68  ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A  +G    E +  I             +   N  FD         R+   
Sbjct: 69  AAAEGRPVREVADEIAGILVEHWRAGVPVVAYNAAFDLTLLSAELRRHGLP 119


>gi|242239125|ref|YP_002987306.1| ribonuclease T [Dickeya dadantii Ech703]
 gi|242131182|gb|ACS85484.1| ribonuclease T [Dickeya dadantii Ech703]
          Length = 225

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 28/219 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D     + + T  F  +P +  + +P+A+   G
Sbjct: 22  VVIDVETAGFNAQTDALLEIAAVTLKMDDNGWLQPDETLHFHIEPFEGAILNPDALAFNG 81

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 82  IDPTNPLRGAVSEYEALHEIFKMVRKGIKDKGCNRGIVVAHNAAFDHSFLMAAAERCGLK 141

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +      +   AH 
Sbjct: 142 RNPFHPFVTFDTTSLSGLVLGQTVLAKAC-----------------ITADILFDSSQAHS 184

Query: 177 AKADVYATLALVWLIREK--KPKLFEYLYDYRNKNQLRK 213
           A  D   T  L   +  +  +   +    +  + +    
Sbjct: 185 ALYDTQRTAELFCELVNRWKRLGGWPLAVEDSDNDSAVN 223


>gi|27367317|ref|NP_762844.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|27358886|gb|AAO07834.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6]
          Length = 245

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 68/205 (33%), Gaps = 19/205 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+  D+ET G D   D+      V  D   E I  +               E+  I G+
Sbjct: 52  SFLALDFETTGLDAKHDKILSIGMV--DLTLEGINLSSAEEILLNHGAYIKAESARINGL 109

Query: 64  TPQKALRDGVVEAE---FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TPQ AL  G    +     + + + F      ++  ++   +  + +    ++F  +   
Sbjct: 110 TPQ-ALEQGCSLEQGCSLEQGMMRLFERAQGKVLLAHSAIIEQGFLQAFAQQHFQLA--- 165

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L +             +  +    +SF+L DL     +   ++H A +D
Sbjct: 166 --KLPCHFVDTLQI--------EKRFSYAGKSGQRSSFQLDDLRRCYHLPDYHSHSAASD 215

Query: 181 VYATLALVWLIREKKPKLFEYLYDY 205
             A   L  +  +K     +   + 
Sbjct: 216 ALACAELFIVQSKKLDLNKQRQLNT 240


>gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish
           7]
 gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon
 gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7]
          Length = 230

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 61/217 (28%), Gaps = 26/217 (11%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  +   + +            F+  P  D     EA  I GI+
Sbjct: 7   IILDTETTGLDPRQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPF--EAYRIHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +     +    +F S     I   +N  FD  +  +    +           
Sbjct: 64  GEFLKDKPLFHT-IADDFLEFISDSKLII---HNAPFDIKFLNHEL--SLLKRTDIKLLE 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
             +  D L + R+I+                + + L  L     +++     H A  D  
Sbjct: 118 LANTIDTLVMARSIFPG--------------SKYNLDALCKRFKVDNSGRQLHGALKDAA 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
               +   +   +   F+ +      N L        
Sbjct: 164 LLAEVYVELMGGRQSAFKMVDKSAVINNLATNQVNNK 200


>gi|281202348|gb|EFA76553.1| DNA polymerase III [Polysphondylium pallidum PN500]
          Length = 725

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 46/189 (24%), Gaps = 30/189 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G     D   +   V +     +      F           P A  I  ++ 
Sbjct: 322 VCFDLETSGFGPD-DSIIEIGAVEL-INGCRTG--LTFQSYAKPKTQIHPAAEQIHQLSN 377

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                   +E      +  F       I+  +N+ FD         R+            
Sbjct: 378 FLLQDAPPIEF----VLSSFMDFVGDSILVAHNLAFDRRMLIQELVRSKTPFDIN----- 428

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA---NGIEHVNAHDAKADVY 182
                    MR       D           +++ L  ++     N +     H A  D  
Sbjct: 429 ---HKCFCTMRYFRKMYKD-----------SNYSLDSISQQLKINKLLLRRTHGALVDSE 474

Query: 183 ATLALVWLI 191
               +   +
Sbjct: 475 ILAIVYKHL 483


>gi|254452968|ref|ZP_05066405.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           238]
 gi|198267374|gb|EDY91644.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           238]
          Length = 242

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 53/221 (23%), Gaps = 42/221 (19%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G + +  DR  +   + +            +             A  I GI 
Sbjct: 4   IVLDTETTGFEPSEGDRIVEIGAIEL-HNHMPTGR--TYHQYINPKRTMPAGAFGIHGIG 60

Query: 65  PQ-------------KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           P                    V  AE ++    F        +  +N  FD  +      
Sbjct: 61  PDLLEPPQTPTAGQVLLRDKPV-FAEIAQAFVDFIGDSK---LVIHNAAFDMKFLNAELG 116

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                             D L + R  +  SP                L  L    GI++
Sbjct: 117 WVNRPLLPMGQS-----LDTLGIARKKFPGSPA--------------SLDALCRRFGIDN 157

Query: 172 VNA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            N   H A  D      +   +   +           +  +
Sbjct: 158 SNRTLHGALLDSEILAEVYLELIGGRQPDLVMGDQTGSNAK 198


>gi|160899427|ref|YP_001565009.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160365011|gb|ABX36624.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
          Length = 238

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 52/199 (26%), Gaps = 28/199 (14%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   +I D ET G      DR  +   V       +  +               P+A+ 
Sbjct: 1   MSRQ-IILDTETTGLSADNGDRLIELGCV---EMVNRKLTGNNLHLYFNAGRDSHPDALR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT +        E +    I ++       I   +N  FD  +             R
Sbjct: 57  VHGITTEFLKDKPRFEHKV-DEIWEYLQGAELII---HNAPFDLGFLNKELELANRPPIR 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
                     D L + + ++                    L  L     +++     H A
Sbjct: 113 QCVSG---VIDTLVMAKEMFPG--------------KRNSLDSLCDRLEVDNSGRTLHGA 155

Query: 178 KADVYATLALVWLIREKKP 196
             D      +   +   + 
Sbjct: 156 LLDAELLADVYINLTRGQE 174


>gi|330813374|ref|YP_004357613.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486469|gb|AEA80874.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 225

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 28/194 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G     D+  + A + ++    +I +   F      +      A    GI+ 
Sbjct: 4   IILDTETTGLSFNTDKIIEIACIELE---NQIPTKNKFHVFINPNMDISDGAYQTHGISR 60

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  V   + ++    F        +  +N  FD  +          +       + 
Sbjct: 61  DFLRDKPV-FKDIAKEFLNFIKDSK---LVIHNADFDLAFLNKELQELDLEPL-----SK 111

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYA 183
           +   D L + R  +  S                 L  L     I       H A  D   
Sbjct: 112 DRVVDTLFLARQKFPGSQA--------------SLDALCKRFKINTSEREKHSALVDCNL 157

Query: 184 TLALVWLIREKKPK 197
              +   + EKK  
Sbjct: 158 LTEVYIELLEKKEP 171


>gi|325068103|ref|ZP_08126776.1| Exonuclease RNase T and DNA polymerase III [Actinomyces oris K20]
          Length = 260

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 19/196 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +D ET G D + DR    A V          + +S   +             A  + G+T
Sbjct: 28  FDTETTGVDPSGDRLVTAALVWRATPRADGVRPQSVATWLA--DPGVEIPEAAAAVHGVT 85

Query: 65  PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            ++A  +G    E    + +    ++     +   N  +D         R+         
Sbjct: 86  TERARAEGRPVTEVLAEVSEHLVEAMAAGTPVVAFNASYDLTLMEAELARHGLP--TMRS 143

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADV 181
             G     + D +    A                  +L DL    G+    A H A+ DV
Sbjct: 144 RLGRELGPIADPLVLDRAV---------DRYRRGKRRLGDLCEVYGVHVDEALHTAEVDV 194

Query: 182 YATLALVWLIREKKPK 197
            ATL ++  +    PK
Sbjct: 195 AATLDVLEALAAAHPK 210


>gi|255547339|ref|XP_002514727.1| exonuclease, putative [Ricinus communis]
 gi|223546331|gb|EEF47833.1| exonuclease, putative [Ricinus communis]
          Length = 501

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 35/195 (17%)

Query: 5   FVIYDYETF-------GRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPE 56
              +D ET        G         +F  + V  R+ E++ S      +PA+  L  P 
Sbjct: 12  IAFFDLETTVPNRPGQGF-----AILEFGAILVCSRKLEELHSYSTL-VRPANLSLISPT 65

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           +V   GIT    +      AE +  +++  +       G+N  RFD      +  R  + 
Sbjct: 66  SVRCNGITHDAVVLAP-TFAEIADIVYEILN--GRIWAGHNIQRFD-----CVRIREAFA 117

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                        D L ++                   A   K+  LA   G+     H 
Sbjct: 118 EIGRQPPENKGIIDTLALL------------THKFGRRAGDMKMASLATYFGLG-KQTHR 164

Query: 177 AKADVYATLALVWLI 191
           +  DV   L ++   
Sbjct: 165 SLDDVRMNLEVLKYC 179


>gi|210135714|ref|YP_002302153.1| DNA polymerase III subunit epsilon [Helicobacter pylori P12]
 gi|210133682|gb|ACJ08673.1| DNA polymerase III epsilon subunit [Helicobacter pylori P12]
          Length = 323

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 31/218 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 109 FSFIDLETTGSCPIKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 162

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  L    V  E  + +  F       +   +N  FD  +    F    +        
Sbjct: 163 AYEDTLNAPSVH-EALQELRLFL---GNSVFVAHNANFDYNFLGRYFVEKLHCPLLN--- 215

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                 +    R   +  + L  L    G     +H A AD  A
Sbjct: 216 -----------------LKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALA 258

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +  L  +     P   +   D  + ++    +  +   
Sbjct: 259 SYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPR 296


>gi|126011010|ref|YP_001039760.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia
           ambifaria phage BcepF1]
 gi|119712586|gb|ABL96807.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia
           ambifaria phage BcepF1]
          Length = 197

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 57/191 (29%), Gaps = 19/191 (9%)

Query: 5   FVIYDYETFGRDV-------ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           F ++D ET G             R  +FAG+  D     I  T  F C        +   
Sbjct: 3   FTVFDTETTGLPSHPLAPLDRQPRIIEFAGIVTD--GRDILHTLEFRC--NPGVALEEII 58

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             ITG+T         +   F   +  FF       +     +F        F RN  D 
Sbjct: 59  TKITGLTDADLRDQPDISH-FFGELKSFFGKEPMPHVFGEKPKFARVAHNLSFDRNLLDY 117

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                 +   R   LD +    A     ++  +   G    KLQ+L      E    H A
Sbjct: 118 ------DLKRRGKTLDDIGFNDALMICTVEQTTPQFGRP-MKLQELWSRARGEFTQKHRA 170

Query: 178 KADVYATLALV 188
             DV     + 
Sbjct: 171 LDDVMRLHDVC 181


>gi|54297294|ref|YP_123663.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
 gi|53751079|emb|CAH12490.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
          Length = 233

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 33/215 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           VI D ET G       R  +   +      E I+       F          D  A  + 
Sbjct: 4   VILDTETTGIGPEQGHRVIEIGCI------ELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +      +   +      QF       I   +N  FD  +  +         +  +
Sbjct: 58  GISTEFLQDKPL-FQDIVTEFIQFVEGSELII---HNAPFDVGFLNSELKHV---KWNKT 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
            ++     D L + R  +    +               L  L     I+H N   H A  
Sbjct: 111 LEDYCRILDTLILAREKHPGQRN--------------SLDALCKRYEIDHFNRELHGALL 156

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
           D      +   +   +  LF  +    ++++++  
Sbjct: 157 DAEILAYVYLAMTGGQSSLFTEVESSLSQSKIKTQ 191


>gi|294669159|ref|ZP_06734240.1| oligoribonuclease [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291308903|gb|EFE50146.1| oligoribonuclease [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 185

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFIT 61
           +    D E  G D   +R  + A +  D     +  +EV+    +D+ L   +A      
Sbjct: 7   NLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDAWNTATH 66

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYD 116
           G T   Q+     + EAE  +++  F +         +  N+I  D  +      R    
Sbjct: 67  GRTGLTQRVRESQLTEAEVEQKLLDFIAQWIPEKSTPMCGNSIHQDRRFMVKYMPRLEAY 126

Query: 117 SYRW 120
            +  
Sbjct: 127 FHYR 130


>gi|213618879|ref|ZP_03372705.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 178

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 44/166 (26%), Gaps = 19/166 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N ++  D ET G         +   +  D          +             EA+ I G
Sbjct: 18  NDYLFIDTETTGLG-DDAEIVEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHG 69

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          +    + + F       + YN   FD    R  +  N   S    W
Sbjct: 70  ITNEMVAFAPA-WTDICGAVEELFRRFG--FVIYNA-DFDLRLIRQTYALNERPSEGAPW 125

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
                    +           +    P R +G    KL D A   G
Sbjct: 126 MLAAHSVCAM-------KLYAEYRGEPGRFNGYKWHKLVDAAAHEG 164


>gi|54294270|ref|YP_126685.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
 gi|53754102|emb|CAH15575.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
          Length = 233

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 33/215 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           VI D ET G       R  +   +      E I+       F          D  A  + 
Sbjct: 4   VILDTETTGIGPEQGHRVIEIGCI------ELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +      +   +      QF       I   +N  FD  +  +         +  +
Sbjct: 58  GISTEFLQDKPL-FQDIVTEFIQFVEGSELII---HNAPFDVGFLNSELKHV---KWNKT 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
            ++     D L + R  +    +               L  L     I+H N   H A  
Sbjct: 111 LEDYCRILDTLILAREKHPGQRN--------------SLDALCKRYEIDHFNRELHGALL 156

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
           D      +   +   +  LF  +    ++++++  
Sbjct: 157 DAEILAYVYLAMTGGQSSLFTEVESSFSQSKIKTQ 191


>gi|241667560|ref|ZP_04755138.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876105|ref|ZP_05248815.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842126|gb|EET20540.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 178

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 50/163 (30%), Gaps = 9/163 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVF 59
           T++ V  D E  G DV   R  + A +  D+    I   E      +D+ L       + 
Sbjct: 4   TDNLVWIDLEMTGLDVDNCRIIEIAAIITDKNLNIIAEAEPIAIHQSDEILNSMNEWCIK 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
           + G T   Q+         +  ++I +F           +  N+I  D  +     Y   
Sbjct: 64  VHGETGLTQRVKDSKTSLKQAEQKILEFIKEYVPYQSSPLCGNSIWQDRRFL--AKYMPN 121

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
            D Y        +   LL+                + DD   S
Sbjct: 122 IDDYCHYRMLDVTSLKLLNEYWGDGESFYKKSTHKALDDIRES 164


>gi|297198375|ref|ZP_06915772.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|197714433|gb|EDY58467.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 241

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 44/164 (26%), Gaps = 18/164 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  D          V              A  + G+T + 
Sbjct: 12  FDTETTGVDVETDRIVSAAVVVQDAAGT---RPRVSRWLVNPGVPVPAGATAVHGLTEEH 68

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             R+G   A     I +  +        ++  N   FD         R+   S    W +
Sbjct: 69  LQRNGRWPAPVMFEIAETLAEQAAAGRPLVVMNAP-FDLTVLDRELRRHRASSLDR-WLD 126

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
            +    L   +   +                    L DL    G
Sbjct: 127 SSPLLVLDPRVLDKHL----------DRYRKGRRTLTDLCEHYG 160


>gi|323343969|ref|ZP_08084196.1| exonuclease [Prevotella oralis ATCC 33269]
 gi|323095788|gb|EFZ38362.1| exonuclease [Prevotella oralis ATCC 33269]
          Length = 165

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 26/190 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N+F   D+ET   + A         V V    E  +S     C   + Y        + 
Sbjct: 1   MNNFAAIDFET--ANAARTSVCSVGMVIV-EDGEITDSYYHLICPLPNYYTL--WTTAVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +          +    I           +  +N  FD+        +  + +Y   
Sbjct: 56  GLTFEDTAGAP-TFPDVWAEIAPKIRY---LPLVAHNKAFDE-----SCLKAVFKAYGMQ 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + +      LL   R                    +++LQ +A   G    + H A AD 
Sbjct: 107 YPDYKFYCTLLGARRTFR------------KGMLPNYQLQTVAQYCGYSLSHHHHALADA 154

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 155 EACAHIALKI 164


>gi|229488668|ref|ZP_04382534.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121]
 gi|229324172|gb|EEN89927.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121]
          Length = 226

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 7/116 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D ET GRD +  R        +D       S E               A  + GI+
Sbjct: 9   ICAFDLETTGRDPSTARIVSACVAVIDGS-----SVETRTWLLDPGVDIPAGASAVHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + A + G   +E    I +    S      +   N  +D         R    ++
Sbjct: 64  TEFAAQHGQDYSEGYEEIREALHNSWARDHAVVAFNASYDLTVMHAEGLRIGKPAF 119


>gi|270261613|ref|ZP_06189886.1| ribonuclease T [Serratia odorifera 4Rx13]
 gi|270045097|gb|EFA18188.1| ribonuclease T [Serratia odorifera 4Rx13]
          Length = 226

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 66/213 (30%), Gaps = 26/213 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D +   + + T  F  +P +     PEA+   G
Sbjct: 31  VVIDIETAGFNAKTDALLEIAAVTLKMDEEGWLQQDETLHFHVEPFEGANLQPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPHNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +A     +   AH 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAADIPFDSTQAHS 193

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
           A  D   T  L   +  +  +L  +     N +
Sbjct: 194 ALYDTEQTAQLFCELVNRWKRLGGWPLAIGNND 226


>gi|300775432|ref|ZP_07085294.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC
           35910]
 gi|300506172|gb|EFK37308.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC
           35910]
          Length = 407

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 66/194 (34%), Gaps = 28/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D E+ G     +     A  R D Q +  +           +    P    +T IT
Sbjct: 2   YSIIDIESNGAGYRNECIIDIAIYRYDGQ-KITDQFISL---VNPEGDITPFVQKLTSIT 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          E ++R+ +     NT ++G+N   FD    R  F R  YD    +   
Sbjct: 58  PKMVKTAPKFH-EIAKRVIEITQ--NTTLVGHNI-DFDYRMLRQSFKRLGYDFKINT--- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + +                    S+ L  L  + GI   N H A+ D  AT
Sbjct: 111 ----LDTIPLAK-------------KLIPDEVSYSLGKLVKSLGIPLTNHHRAEGDARAT 153

Query: 185 LALVWLIREKKPKL 198
           L L  L+  K  + 
Sbjct: 154 LELFKLLISKDTEN 167


>gi|194364623|ref|YP_002027233.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           R551-3]
 gi|194347427|gb|ACF50550.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 243

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V     +++  +   +      D   +  A  +TG+T
Sbjct: 4   IILDTETTGLEWKKGNRIVEIGCV---ELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          +F++   +F +  +   +  +N  FD  +  N    +          +
Sbjct: 61  LEFLDDKP----DFAQIADEFLAFIDGAELIIHNAAFDLGFLDNEL--SLLGPQYGKITD 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L + R  +    +               L  L    G++  H   H    D  
Sbjct: 115 RCTVIDTLVMARERFPGQRN--------------SLDALCRRLGVDNSHRALHGGLLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILGDVYIALTSGQEEI 176


>gi|51597447|ref|YP_071638.1| bacteriophage protein [Yersinia pseudotuberculosis IP 32953]
 gi|186896564|ref|YP_001873676.1| exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590729|emb|CAH22374.1| putative conserved bacteriophage protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699590|gb|ACC90219.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
          Length = 233

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 20/189 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +++I D ET G D       + + +  D     +        KP      D EA  I GI
Sbjct: 59  NYLILDTETTGLD-NAAEIVEISII--DCMGNVL---LDTLIKPLGFIPSDVEA--IHGI 110

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +   +  +     N   + YN+        ++  +            
Sbjct: 111 TNKMVDNAPH-WCDIHEKFIEIIKSRN--FVAYNSRFDTRLIYQSAEFS--------GVT 159

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVY 182
            G           A+  ++    QW SR        L   A    +    A H A +D  
Sbjct: 160 TGADDIASASGNCAMLEYARFHGQWDSRQSDFKWQTLIAAAGQMNVITEGASHRALSDCK 219

Query: 183 ATLALVWLI 191
            TL ++  +
Sbjct: 220 TTLGVIKAM 228


>gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
 gi|118164374|gb|ABK65271.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
          Length = 329

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 76/295 (25%), Gaps = 38/295 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D   +  +S             P P    + G+T  
Sbjct: 19  VIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSL---LNPGVDPGP--THVHGLTAA 73

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  + +         +  +N+ FD  +          +    +     
Sbjct: 74  MLEDQPQ-FADIAGDVVEVLR---GRTLVAHNVAFDYAFLAAEAELAGIELPVDT----- 124

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
               ++  +                       +L+ LA   G+     HDA  D      
Sbjct: 125 ----VMCTVELARRLDLGIDN----------LRLETLAAYWGVTQQRPHDAFDDAMVLTG 170

Query: 187 LVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           ++    ++     ++  ++    +      +    + PL  ++               V 
Sbjct: 171 VLASALQRARERDIWLPVHPVTRRRWPNGRVTHDELRPLKVLASRMP--CPYLNPGPYVG 228

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
             P  +   +            +    +L +R+  +       V      V  N 
Sbjct: 229 GRPLVQGMRVAL------AAEVERTHEELVERILHAGLAYSDTVDRETSLVVCND 277


>gi|297584199|ref|YP_003699979.1| DNA polymerase III subunit epsilon [Bacillus selenitireducens
           MLS10]
 gi|297142656|gb|ADH99413.1| DNA polymerase III, epsilon subunit [Bacillus selenitireducens
           MLS10]
          Length = 242

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 54/206 (26%), Gaps = 27/206 (13%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F ++D ET G    L D               +I+  E F+               +TG
Sbjct: 59  TFTVFDLETTGFFCNLGDEVLAIGA--TKLNRNRIDFPEQFYEVIEPVKPMSAFVSNLTG 116

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T ++    G+   E      +F       I+  +   FD  +                W
Sbjct: 117 MTHEEVT-AGLAFPEA---FSKFLEFSKGSILVAHPASFDVQF---------LKILADRW 163

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +        D  Q            L +L     IE    H A AD Y
Sbjct: 164 R-----------LHGYDPLYIDQYQLAKSLYPRKRNSLDELIKLYQIETSGRHHALADAY 212

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208
            T  +   + ++        +    K
Sbjct: 213 MTATVFHHLLDELDAKDVKTWGELKK 238


>gi|83311172|ref|YP_421436.1| DNA polymerase III subunit epsilon [Magnetospirillum magneticum
           AMB-1]
 gi|82946013|dbj|BAE50877.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 306

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  D ET G D A D   + A V           E  + F            E   +TGI
Sbjct: 53  IFIDLETTGLDPAKDEIIELAMVPFVYGLDGRIFEIQDAFQGLRQPSNPIPAEITKLTGI 112

Query: 64  TPQKALRD 71
           T +     
Sbjct: 113 TDEMVAGK 120


>gi|254671000|emb|CBA07757.1| oligoribonuclease [Neisseria meningitidis alpha153]
          Length = 215

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 32  KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 91

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 92  THGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 151

Query: 115 YDSYRW 120
              +  
Sbjct: 152 NYFHYR 157


>gi|148979109|ref|ZP_01815317.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
 gi|145961975|gb|EDK27264.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
          Length = 238

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D+ET G + + D       V       +I   +            + E+V I GIT
Sbjct: 48  FLALDFETTGLNPSKDGIITIGLVPF--TLNRIYLRQARHWTLRPRQKLEEESVVIHGIT 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +       E    + Q  +      + +      D+ +  +  R           N
Sbjct: 106 HNDIIDAP-DLDEVLDEVLQAMA--GHIPVVHYRRIERDFLNNALKVRL----------N 152

Query: 125 GNSRWDLLDVMRAIYAFSPDG--IQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
               + +LD +              W         S +L        +     H A  D 
Sbjct: 153 EGIEFPVLDTLEIESQIQNKLAGGLWNKLKGKKPGSVRLGQSRRRYHLPDYTPHHALTDA 212

Query: 182 YATLALVWLIREKK 195
            AT  L+       
Sbjct: 213 IATAELLQAQVAHH 226


>gi|326802467|ref|YP_004320286.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
 gi|326553231|gb|ADZ81616.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
           21]
          Length = 238

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 27/218 (12%)

Query: 1   MTNHFVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADD 50
           M  + +  D ET G                   Q A +   +   +I+  E F+    DD
Sbjct: 1   MQEYLLFIDTETTGLPKKWTVGYSTKDNWPSAVQVAWIVFTKDGREIKR-ENFYVN-EDD 58

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
            +   +A  +  I        GV       ++          ++G + +  D +     F
Sbjct: 59  VVVSRQAQLVHRIKDSYLRTFGVPRCAVMEKLSSDLRQFKPLVVG-HFVALDFHVLGADF 117

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
           YR            G+ R     +  + Y   P        +                 E
Sbjct: 118 YRC-----AMENPLGDLRLFCTMLASSGYVKKPWIKYLRLNEL---------YQELFEKE 163

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNK 208
              AH+A  D  AT    + + ++K    E + + + K
Sbjct: 164 LEKAHNALLDADATAKSYFELVKRKEVTEETIEEQQVK 201


>gi|269968066|ref|ZP_06182103.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827312|gb|EEZ81609.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 238

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 19/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F++ D ET G D   +       V + +    + +++  +     D    PE + +  IT
Sbjct: 51  FIVLDLETTGLDSEEEVILSMGWVEIRQGHIDLATSQHLYV--HSDSKIKPETIVVNHIT 108

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q     G+   E  R    FF      +I  +    +  +      R F          
Sbjct: 109 QQMLTD-GISIHEAMRT---FFKAAENKVIVAHGCIVETSFINQYLQRVFN--------- 155

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L ++          +Q        +   L       G+   N H+A AD  AT
Sbjct: 156 ----IKELPLIWIDTLRIEKRLQRAINASDESDVTLAATRERYGLPAYNGHNALADAIAT 211

Query: 185 LALVWLIREKKPKL 198
             L+ + + +    
Sbjct: 212 AELLLVQQTRIAPQ 225


>gi|126738511|ref|ZP_01754216.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6]
 gi|126720310|gb|EBA17016.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6]
          Length = 242

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 56/217 (25%), Gaps = 34/217 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V     +  + + + +      +     EA  + GI 
Sbjct: 4   IVLDTETTGFDPFSGDRIVEIGAV---ELFNHMPTGKTYHEYINPERSMPHEAFGVHGIG 60

Query: 65  PQKALRDGVVE---------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           P         E           F++    F        +  +N  FD  +          
Sbjct: 61  PDLLEPPQQPEKGQVTLRDKPVFAKVGQSFLDFVQDSKLVIHNASFDMKFLNAELDWMGL 120

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174
                +        D L V R  +  +P                L  L     I++ N  
Sbjct: 121 PKLPLNQA-----IDTLAVARKRFPGAPAT--------------LDALCRRFQIDNSNRT 161

Query: 175 -HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            H A  D      +   +   +   F          +
Sbjct: 162 LHGALLDSEILAEVYLELIGGRQPDFGLSTSTSGSKE 198


>gi|227499152|ref|ZP_03929287.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904599|gb|EEH90517.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 228

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 61/196 (31%), Gaps = 24/196 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D E  G   A D   + A ++VD    +     VF                +TGIT 
Sbjct: 56  VVFDLELAG--YAEDDIIEIAAIKVDFLGRQTA---VFRELIRPRTKISKRVTEMTGITR 110

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      E  +R   F     + ++G++    D         R    ++R  + + 
Sbjct: 111 DMVKDKPQ-LPEVLKRFFAFVE--GSAVMGHDIGYNDIMAINLACRRYGMKAFRPPFLDT 167

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            SR  L  + R                       L  L     I     H+A AD  ATL
Sbjct: 168 -SRLILRHLSREA---------------VGGKTGLAALLAHFNIPIHRHHEALADCEATL 211

Query: 186 ALVWLIREKKPKLFEY 201
            L   + ++  K   +
Sbjct: 212 LLYEAVAKEIRKQKSH 227


>gi|23013261|ref|ZP_00053177.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 302

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 56/184 (30%), Gaps = 32/184 (17%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + D ET G D+  D   +   V  +           +V            PE   +TGIT
Sbjct: 44  VVDVETTGLDLVKDEIIELGMVLFEFSSDGRIYRILDVVEAFQEPTIPILPEITQLTGIT 103

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  AE  R I          ++  +N  FD  +                   
Sbjct: 104 AEMVAGHSIDVAEIERLI------APVALVIAHNAGFDRRF------------------- 138

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                + L    A  A++    +     +G    KL  L    G+ H   H A AD  A 
Sbjct: 139 ----LERLAPGFAKKAWACSINEIDWAAEGIGGTKLFYLLAQYGLFHDG-HRAGADCLAL 193

Query: 185 LALV 188
           L ++
Sbjct: 194 LEIL 197


>gi|253795564|ref|YP_003038660.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia
           cicadicola Dsem]
 gi|253739872|gb|ACT34207.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 182

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 55/193 (28%), Gaps = 26/193 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G  V  DR  + A ++++       +   +F  P         A  + GI+ 
Sbjct: 9   IILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYF-NPQP-VKVSRSAFNVHGISN 66

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +            +R   +F +      +  +N RFD             D         
Sbjct: 67  EFLSDKPA-FKSCAREFLEFVAGHE---LIAHNARFDLQIINRELQMAGADPI------- 115

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADVYAT 184
                             D +    +     S  +  L     +E     H A  D    
Sbjct: 116 ------------DAGCWRDSLSIAKQLFPNRSNSMAALCKRFNLECETETHSAARDCELL 163

Query: 185 LALVWLIREKKPK 197
             +  LI ++K +
Sbjct: 164 ARVYELILDEKRR 176


>gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           Iowa]
 gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa]
          Length = 229

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 61/217 (28%), Gaps = 26/217 (11%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  +   + +            F+  P  D     EA  I GI+
Sbjct: 7   IILDTETTGLDPQQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPF--EAYRIHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +     +    +F S     I   +N  FD  +  +    +           
Sbjct: 64  GEFLKDKPLFHT-IADDFLEFISDSKLII---HNAPFDIKFLNHEL--SLLKRTDIKLLE 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
             +  D L + R+I+                + + L  L     +++     H A  D  
Sbjct: 118 LANTIDTLVMARSIFPG--------------SKYNLDALCKRFKVDNSGRQLHGALKDAA 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
               +   +   +   F+ +      N L        
Sbjct: 164 LLAEVYVELMGGRQSAFKMVDKSAVINNLATNQVNNK 200


>gi|121635185|ref|YP_975430.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18]
 gi|120866891|emb|CAM10650.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18]
          Length = 253

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 10  MIQRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 66

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 67  VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 123

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 124 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 166

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 167 ALIDCELLGEVYLAMTRRQ 185


>gi|54026013|ref|YP_120255.1| DNA polymerase III subunit epsilon [Nocardia farcinica IFM 10152]
 gi|54017521|dbj|BAD58891.1| putative DNA polymerase [Nocardia farcinica IFM 10152]
          Length = 229

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 8/97 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET   D    R    + +RVD                        EA  I G T + 
Sbjct: 11  FDLETTSADPHSARVVTASIIRVDG-----GDVRARNWIANPHIPIPAEATEIHGYTDEY 65

Query: 68  ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRF 101
             + G   A+    +            C+  YN    
Sbjct: 66  VQKHGRPHADVIAEVTAELHACWAEGRCVAVYNGSFD 102


>gi|78777804|ref|YP_394119.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM
           1251]
 gi|78498344|gb|ABB44884.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 266

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 68/226 (30%), Gaps = 35/226 (15%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   F I D ET G  +   +  + A ++V +    +E  E       + +  +P    
Sbjct: 66  MSESTFCIVDIETNGSKIEKHQIIEIAALKV-KNGLVVERFESLV----ECHEINPHITE 120

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           ITGI+  + +          + ++ F +     +   ++++FD  +      +       
Sbjct: 121 ITGISTNETIDAPN----LKKVMYDFRTFLGDAVFIAHDVKFDYKFISLSMQKIGLPPL- 175

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL---QDLALANGIEHVNAHD 176
                                 +         +    S++        + N       H 
Sbjct: 176 ---------------------LNRSLCSLSLAERTIESYRYALSYLNTIFNLHPEATHHR 214

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
           A +DV  T  L  L      K  + + D    ++  K +      P
Sbjct: 215 AMSDVITTYELFKLSLNSVDKEVKTVEDLIRFSKEAKRLKRPKFDP 260


>gi|308177075|ref|YP_003916481.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307744538|emb|CBT75510.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 333

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 63/212 (29%), Gaps = 29/212 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F   D+ET   +  +        V+V R  + +E+ +     PA     DP  + I
Sbjct: 1   MALDFTAIDFET--ANGFIGSACSVGLVKV-RSGQIVETEQWLMQPPAGFDHFDPRNISI 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             IT              S+++        + ++  +N  FD    R     +       
Sbjct: 58  HHITSDMVSDAPR----VSQKLPDLLEFIGSDVLVAHNSSFDSGVIRAASEASELP---- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                                    ++   +     S+ L  +A   G    N H+A AD
Sbjct: 110 ----------------VPQIAHLCTVKLSRKAYDLPSYSLPFVAEEAGHPIENHHEALAD 153

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
             A      +I   +    + + +  +   +R
Sbjct: 154 SLACA--WAMIDIAQRSGRQSVLETADHYGVR 183


>gi|295133689|ref|YP_003584365.1| exonuclease family protein [Zunongwangia profunda SM-A87]
 gi|294981704|gb|ADF52169.1| exonuclease family protein [Zunongwangia profunda SM-A87]
          Length = 218

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 22/189 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV+ D ET G D   DR      V++        +S E++  +       +P+ V I G
Sbjct: 36  TFVVLDTETTGFDQEKDRILSIGCVKIKNNKLLVADSFEIYLKQ----EKFNPDTVEIHG 91

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +   +     + E +  +   ++       ++  ++  FD         RN         
Sbjct: 92  LIKHERFET-ISEEKAIQLFLKYIKDS---VLVAHHAGFDINMINAALKRNHLP------ 141

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   L + +              +  D   ++ L ++ALA  I+  + H A  D +
Sbjct: 142 -------KLKNRVLDTGILYRKTRIISNFIDQHKTYSLDEVALAYNIDLKDRHTAIGDAF 194

Query: 183 ATLALVWLI 191
            T      I
Sbjct: 195 ITAIAFLKI 203


>gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
 gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
          Length = 229

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 61/217 (28%), Gaps = 26/217 (11%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  +   + +            F+  P  D     EA  I G++
Sbjct: 7   IILDTETTGLDPQQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPF--EAYRIHGLS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +     +    +F S     I   +N  FD  +  +    +           
Sbjct: 64  DEFLKDKPLFHT-IADDFLEFISDSKLII---HNAPFDIKFLNHEL--SLLKRTEIKLLE 117

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
             +  D L + R+++  +               + L  L     +++     H A  D  
Sbjct: 118 LANTIDTLVMARSMFPGA--------------KYNLDALCKRFKVDNSGRQVHSALKDAA 163

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
               +   +   +   F+ +      N L        
Sbjct: 164 LLAEVYVALTGGRQSTFKIVDRSIRINNLATHQVNNK 200


>gi|71892007|ref|YP_277737.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796113|gb|AAZ40864.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 249

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 40/215 (18%)

Query: 1   MTNHFV---IYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIEST---EVFFCKPAD 49
           M+ + +   + D ET G +         R  +   V      E I        F      
Sbjct: 1   MSTNIIRQIVLDTETTGMNKFGPHYEGHRVIEIGAV------EIINRHLTDNTFHVYLKP 54

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           + + D EA+ + GI+ Q      +    FS  I++F +      +  +N  FD  +    
Sbjct: 55  NRMIDIEAIQVHGISDQFLKNKPI----FSEIINEFLTFIRGSELIIHNASFDLGFLNQE 110

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
                  +     ++  +  D L + R  +    +               L  L     I
Sbjct: 111 LRIC--KANSKKIESYCTVIDSLKLARKKFPGQRN--------------SLDALCERYSI 154

Query: 170 EHVNA---HDAKADVYATLALVWLIREKKPKLFEY 201
            + N    H A  D      +   +   + K+   
Sbjct: 155 NNGNRRNLHSALLDARLLANVFLSMSGGQIKMKFM 189


>gi|298369765|ref|ZP_06981082.1| oligoribonuclease [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282322|gb|EFI23810.1| oligoribonuclease [Neisseria sp. oral taxon 014 str. F0314]
          Length = 185

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFIT 61
           +    D E  G D   +R  + A +  D     +  +EV+    +D+ L   +A      
Sbjct: 7   NLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDAWNTATH 66

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYD 116
           G T   Q+     + EAE  +++  F +         +  N+I  D  +      R    
Sbjct: 67  GRTGLTQRVRESRLTEAEVEQKLLDFIAQWIPEKATPMCGNSIHQDRRFMVKYMPRLEAY 126

Query: 117 SYRW 120
            +  
Sbjct: 127 FHYR 130


>gi|254443961|ref|ZP_05057437.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
 gi|198258269|gb|EDY82577.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Verrucomicrobiae bacterium DG1235]
          Length = 220

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 54/190 (28%), Gaps = 20/190 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V +D ET G     +   Q AGVR+      +   + F                +T + 
Sbjct: 7   LVAFDLETTGLRYKQEEITQIAGVRL--GGVIMNVEDSFCTYVNPGKPIPENIQKLTRVR 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E  +    +    +  + G++  RFD  + R    +   +        
Sbjct: 65  DEDVKDAPKPL-EALQAFSDWV--GDATLFGHDIYRFDFNFIRKYARQEGVE------TR 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +D+   ++                 S  L  +           HDA++D    
Sbjct: 116 TVRFIDTMDIFEVMWPDFSRLRNSLDDIAERLSAGLSSMRR---------HDAQSDAILL 166

Query: 185 LALVWLIREK 194
             +   I++ 
Sbjct: 167 AHIYQRIQDH 176


>gi|94501813|ref|ZP_01308325.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65]
 gi|94426034|gb|EAT11030.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65]
          Length = 238

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 17/194 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+  D+ET G +   D       V      ++I      +     +     E++ I  I
Sbjct: 45  SFMALDFETTGLNPNDDSIISIGMVPF--SLQRIYCNNAVYWVVRPNTPLSEESILIHHI 102

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
              +      +E    R +       +  I+  +  R +         R F ++      
Sbjct: 103 KHSEIQSAPRIE----RLLEPLLEKLSEHILVVHFQRIE---------RLFLNNTLKEHL 149

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADV 181
               ++ L+D M               R         +L +      +    +H+A  D 
Sbjct: 150 GETLQFPLIDTMEIEKKALKARQGLTGRILNKPVGGIRLNNCRERYSLPQYQSHNALIDA 209

Query: 182 YATLALVWLIREKK 195
            AT  L        
Sbjct: 210 QATAELFIAQVAHH 223


>gi|271500216|ref|YP_003333241.1| ribonuclease T [Dickeya dadantii Ech586]
 gi|270343771|gb|ACZ76536.1| ribonuclease T [Dickeya dadantii Ech586]
          Length = 226

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 64/208 (30%), Gaps = 26/208 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D     + + T  F  +P +  +  PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDDTLHFHIEPFEGAILRPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYDALHDIFKAVRKGIKDQNCNRAIIVAHNATFDHSFLMAAAERCGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +A     +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAAEIPFDASQAHS 182

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204
           A  D   T  L   +  +  ++  +   
Sbjct: 183 ALYDTERTAQLFCELVNRWKRMGGWPLA 210


>gi|125549801|gb|EAY95623.1| hypothetical protein OsI_17478 [Oryza sativa Indica Group]
          Length = 260

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 57/214 (26%), Gaps = 27/214 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G      R  +FA    D           F      +         +  I
Sbjct: 61  TILVFDLETTGYFHKDHRIVEFA--LCDLSG---GKNSTFETLVNPERTVPDYVQHLIKI 115

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDS 117
                 R G+   ++    +  F             + +N  +FD  +    F R     
Sbjct: 116 GTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPL 175

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHD 176
                      +D L + +          +    +       L+ L    GI  H +AH 
Sbjct: 176 PA-----DWLFFDTLLLAK----------KMVKAEGKKRRTSLEALREHYGIVSHDDAHR 220

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
           A  DV     +   +        E L +   K  
Sbjct: 221 AMRDVMILSQVFQKMTFDLKLTNEELINEAMKAS 254


>gi|307297316|ref|ZP_07577122.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916576|gb|EFN46958.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 182

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 29/201 (14%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           FV+ D ET G +     +  + AGVRV   +  + +  +        + +       +TG
Sbjct: 3   FVVIDTETTGMNPYRGAKLIEVAGVRVKNWELCRDDFFDSL---IDPECIIPIAITALTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+           +     +  F+S      +  +N  FD  +      +          
Sbjct: 60  ISNLTVKDK----STVCDVLRGFYSFAGDATLVIHNAPFDLSFINFYGDKCGL------- 108

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             G  R   +D +    A    G              L  L    GI   + H A  D  
Sbjct: 109 --GKLRNQFIDTIEVSKAVFRYGRN-----------NLDILLARLGIIPESRHRALGDAL 155

Query: 183 ATLALVWLIREKKPKLFEYLY 203
           AT      +  +        +
Sbjct: 156 ATAEAFVAMLNRIGTNNVTRF 176


>gi|196003864|ref|XP_002111799.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
 gi|190585698|gb|EDV25766.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
          Length = 289

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 62/228 (27%), Gaps = 40/228 (17%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61
           V+ D ET G  V    R  +          E I+       F C     +     A  + 
Sbjct: 16  VVLDTETTGLSVRTGHRIIEIGC------LELIDHQPTSRTFQCYINPKFPVSERAFEVH 69

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ++ +             +    F       I   +N  FD  +  N F +       + 
Sbjct: 70  HLSNKFLEGFP-TFDGIVQDFRDFIQEDTLII---HNGHFDIKFINNEFQKLNIPEISFE 125

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA---HDAK 178
                   D + + R +Y   P                L  L     I+  +    H A 
Sbjct: 126 -----RVIDTMLMARKLYPRQPA--------------SLDSLCDRFNIDKSSRSLGHGAL 166

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYR----NKNQLRKLIDIQNMTP 222
            DV     +   + + +  L   + +      +K+ + K    +   P
Sbjct: 167 TDVKLLQLVYAKLLKDQDALGLNVINQSATQTSKSIVNKTDMSKQHRP 214


>gi|330004210|ref|ZP_08304836.1| exonuclease [Klebsiella sp. MS 92-3]
 gi|328536727|gb|EGF63048.1| exonuclease [Klebsiella sp. MS 92-3]
          Length = 180

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 47/189 (24%), Gaps = 23/189 (12%)

Query: 8   YDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
            D ET G DV    +  + A   V  + E          +       D +A  +  I+ +
Sbjct: 7   IDIETTGLDVYSGHKIIEIA--LVSYELETSRKINEVSLRFNPRRNIDAKAQAVHHISLE 64

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 +   E                + +N  +FD  +          +  +       
Sbjct: 65  MLADCPL--FEDKAASLAKALAAADVWVAHNGRQFDIPFITKQMRDCGVELIQR------ 116

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
              D +D             +W          +   +A+    +   AH A  D    + 
Sbjct: 117 PLIDTMD------------ARWACESGKIPRLQELAVAMGFVYDEEKAHGALYDTDLMMQ 164

Query: 187 LVWLIREKK 195
                R   
Sbjct: 165 CFIKARNDY 173


>gi|284799973|ref|ZP_05985349.2| oligoribonuclease [Neisseria subflava NJ9703]
 gi|284796237|gb|EFC51584.1| oligoribonuclease [Neisseria subflava NJ9703]
          Length = 230

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+    D E  G +   DR  + A +  D     +  ++V+    +D+ L   D      
Sbjct: 51  NNLCWLDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDGMDEWNTAT 110

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115
            G T   Q+     + EAE  + +  F S         +  N+I  D  +      R   
Sbjct: 111 HGRTGLTQRVRESKLTEAEVEQNLLDFMSAWIPEKSTPMCGNSIHQDRRFMVKYMPRLEA 170

Query: 116 DSYRW 120
             +  
Sbjct: 171 YFHYR 175


>gi|282852211|ref|ZP_06261563.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 224-1]
 gi|282556630|gb|EFB62240.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 224-1]
          Length = 937

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 64/202 (31%), Gaps = 28/202 (13%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G      D   QF    + +   K+     F                +T I
Sbjct: 10  FAVVDLETTGTQRNQGDHIIQFGCAIIKK--RKVVKIYSFL--INPHREIPQAVENLTHI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +   +       ++ +I +        I   +N+ FD  +          +       
Sbjct: 66  SNRDVAQARDFNY-YAPKIRKILEN---TIFVAHNVNFDLPFLNYELVNAGLEPL----- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +++ +  +                 S+KL+DL     I+H+N H A +D   
Sbjct: 117 -TGKAIDTVELAQIAFPTF-------------PSYKLRDLTARLKIKHLNPHRADSDALV 162

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
           T  L+  + +K   L +   + 
Sbjct: 163 TAKLLLKVIKKLEALPQATLNT 184


>gi|299472855|emb|CBN80424.1| EsV-1-126 [Ectocarpus siliculosus]
          Length = 206

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 67/210 (31%), Gaps = 27/210 (12%)

Query: 1   MTNHFVIYDYETFGRDVAL-----------DRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           M    + +D ET G                 R    A V  D++    +   V     AD
Sbjct: 1   MPE--LFFDVETTGLPPRKANPETFEQYDSCRVVSIAWVLRDQKTVYSQRYSVTDPGIAD 58

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           D +    A F+ GI+     R G   +          +  +   I  +N+ FD       
Sbjct: 59  DNI---GAEFVHGISRAVMDRYGNAVSVVLSDFMADVNKSDK--IVAHNLDFDRSVVSAE 113

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANG 168
            +R           +   R    + +  +   + + ++ P+        KL++L     G
Sbjct: 114 LFRMG-------SADDARRLMSFNSLCTM-KSTTNLVRIPNSYGSYKWPKLEELHKFLFG 165

Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKL 198
               NAH A  DV A +   + + EK    
Sbjct: 166 HVFENAHHAMCDVDAMVKCYFTLLEKHASN 195


>gi|317133746|ref|YP_004089657.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
 gi|315450208|gb|ADU23771.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
          Length = 284

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 73/236 (30%), Gaps = 44/236 (18%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVR--VDRQW--EKIESTEVFFCKPADDYLPDPEAVFI 60
             + D ET GR        QFAG++  +D+    + IE           +   +     I
Sbjct: 24  ICVIDLETTGRSAKDSYVFQFAGLKCIIDKSLTPKIIE---SLCVFIKPEVPLNERITEI 80

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TG T +        E     RI +F    + CI+  +N  F++ +   ++ RN       
Sbjct: 81  TGFTNEDLKDK-ADEETVFPRIKKFM---DNCIMCSHNTAFEESFMNAMYARNGC----- 131

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKA 179
                    D L + R ++                 S KL  +A   GI      HDA+ 
Sbjct: 132 -VFKPAEIIDTLKMSRDLH-------------KEEKSHKLGVIAERYGIADGVKFHDARD 177

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
           D      L+                       +     + +TP VH    +   R 
Sbjct: 178 DTIICGRLLSRF-------------LSEYVDAKNDDQSKKITPKVHSVSYWEGKRH 220


>gi|291617286|ref|YP_003520028.1| Rnt [Pantoea ananatis LMG 20103]
 gi|291152316|gb|ADD76900.1| Rnt [Pantoea ananatis LMG 20103]
 gi|327393738|dbj|BAK11160.1| ribonuclease T Rnt [Pantoea ananatis AJ13355]
          Length = 223

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 62/200 (31%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D +     + T  F  +P    L  PEA+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEVAAITLKMDDEGWLHHDQTLHFHVEPFVGALLHPEALAFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKLVRKGIKDTGCNRAIMVAHNATFDLNFMNAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L     A G+E     A
Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACKAAGMEFDSSQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 181 HSALYDTQQTATLFCELVNR 200


>gi|288905684|ref|YP_003430906.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus UCN34]
 gi|288732410|emb|CBI13982.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus UCN34]
          Length = 834

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 29/203 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  + I D E  G   A+    Q   V ++   E +++ +                + +T
Sbjct: 13  SQKYAIVDLEATGAH-AMAEIIQVGIVIIEND-EIVKTYQT---DVNPHEALSEHIINLT 67

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++  +     ++ ++ +         C+   +N++FD        +          
Sbjct: 68  GITDEQLAKAP-DFSQVAQEVFSLIED---CVFVAHNVKFDANLLAEQLFMEG------- 116

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           ++    R D +++ +  Y                  + L +LA A  ++  +AH A +D 
Sbjct: 117 YELRTPRVDTVELAQVFYPTFE-------------KYSLGNLADALALDLADAHTAISDA 163

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
           YAT  L   ++ K   L + + +
Sbjct: 164 YATAQLFLKLKAKMKSLPKEVLE 186


>gi|199597302|ref|ZP_03210733.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus rhamnosus HN001]
 gi|199591818|gb|EDY99893.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus rhamnosus HN001]
          Length = 180

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 62/205 (30%), Gaps = 28/205 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D+ET   +         A V V +    ++S              DP+ + I GIT
Sbjct: 3   FIAMDFET--ANRKRASACSLALVVVQQN-RVVDSFYTL---INPQMQFDPQNIRIHGIT 56

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P                I  F       I+  +N  FD    R    R            
Sbjct: 57  PDMVQDQP-SFDRVWPHIQMF--YTPGRIVTAHNAPFDVSVLRLTLDRYGI--------- 104

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R+ ++D ++    F P             + +L  ++ A  I   + H+A AD YA 
Sbjct: 105 AAPRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALKIPLEHHHNALADSYAC 154

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
             ++    E   +          K 
Sbjct: 155 ARILIAENEHFGEARTKAMMKLAKA 179


>gi|50954845|ref|YP_062133.1| DNA polymerase III subunit epsilon [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951327|gb|AAT89028.1| DNA polymerase III, epsilon subunit [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 227

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 43/153 (28%), Gaps = 13/153 (8%)

Query: 7   IYDYETFGRDVALDRPAQ--FAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++D ET G DV   R          +D   E +                  EA  + GI+
Sbjct: 9   VFDLETTGVDVETARVVTAHIG--LLDEHGEIV---HGRSWLLDPGVEIPAEASAVHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + A   G+  A     I          +  +   N  +D         R+  +      
Sbjct: 64  TELAREKGMDAARGIAGIVDQLRRLFARSVPVVAYNAPYDFSLLDREARRHGIEPLH--- 120

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155
            +     D L + RA+  F P         D  
Sbjct: 121 -SPGPIIDPLVIDRAVDKFRPGKRTLTVTADHY 152


>gi|238895034|ref|YP_002919768.1| ribonuclease T [Klebsiella pneumoniae NTUH-K2044]
 gi|238547350|dbj|BAH63701.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 197

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D     + + T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E +    I +        S  +  I+  +N  FD  ++     R    
Sbjct: 80  INPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139

Query: 117 SYRWS 121
              + 
Sbjct: 140 RNPFH 144


>gi|306831779|ref|ZP_07464935.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304425977|gb|EFM29093.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 827

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 29/203 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  + I D E  G   A+    Q   V ++   E +++ +                + +T
Sbjct: 6   SQKYAIVDLEATGAH-AMAEIIQVGIVIIEND-EIVKTYQT---DVNPHEALSEHIINLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++  +     ++ ++ +         C+   +N++FD        +          
Sbjct: 61  GITDEQLAKAP-DFSQVAQEVFSLIED---CVFVAHNVKFDANLLAEQLFMEG------- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           ++    R D +++ +  Y                  + L +LA A  ++  +AH A +D 
Sbjct: 110 YELRTPRVDTVELAQVFYPTFE-------------KYSLGNLADALALDLADAHTAISDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
           YAT  L   ++ K   L + + +
Sbjct: 157 YATAQLFLKLKAKMKSLPKEVLE 179


>gi|296273686|ref|YP_003656317.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
           7299]
 gi|296097860|gb|ADG93810.1| DNA polymerase III, epsilon subunit [Arcobacter nitrofigilis DSM
           7299]
          Length = 279

 Score = 70.6 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 56/186 (30%), Gaps = 29/186 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D ET G +V   +  +   V++ +  E I+S E             P    +T IT
Sbjct: 79  FCIVDIETNGSNVNKGQVIEIGAVKL-KNGEIIDSYESLVYAKD----VPPYIQEVTNIT 133

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P       V        + +F       +   ++I+FD  +    F +            
Sbjct: 134 PSMLKDAPV----LKTVLEEFKIFLEDDVFVAHDIKFDYRFISESFKKYNLGEL------ 183

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                         +      I    R   A  + L  L     I+    H A +D  +T
Sbjct: 184 --------------HNRKLCTIDLSKRTIEAQRYGLDFLKDLLHIDIDTQHRAYSDALST 229

Query: 185 LALVWL 190
             ++  
Sbjct: 230 TYILKE 235


>gi|320533707|ref|ZP_08034325.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134075|gb|EFW26405.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 264

 Score = 70.6 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 61/194 (31%), Gaps = 15/194 (7%)

Query: 8   YDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           +D ET G D + DR    A V R + Q + +    V              A  + G+T +
Sbjct: 32  FDTETTGVDPSGDRLVTAALVWRAEPQADGVRPQSVTTWLADPGVEIPEAASAVHGVTTE 91

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           +A  +G    E    +        T    +   N  +D         R+           
Sbjct: 92  RARAEGRPVTEVLTEVSDHLVAAMTAGTPVIAFNASYDLTLMEAELARHGLP--TMRSRL 149

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183
           G     + D +    A                  +L DL    G+    A H A+ DV A
Sbjct: 150 GRELGPIADPLVLDRAV---------DRYRRGKRRLGDLCEVYGVHVNEALHTAEVDVAA 200

Query: 184 TLALVWLIREKKPK 197
           TL ++  +    P+
Sbjct: 201 TLDVLEALAAAHPQ 214


>gi|93007423|ref|YP_579187.1| DNA polymerase III [Streptomyces phage mu1/6]
 gi|90568501|gb|ABD94180.1| DNA polymerase III [Streptomyces phage mu1/6]
          Length = 238

 Score = 70.6 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 48/167 (28%), Gaps = 18/167 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V +    +  E+                 A  + G+T ++
Sbjct: 11  FDTETTGVDVESDRIVT-AAVLLVGGGQPTETHTWLA---DPGIDIPEAASAVHGVTSER 66

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A  +G         +    +        +   N RFD         R+   S       G
Sbjct: 67  ARAEGRPAPMVVSEVAALLADQIVTGVPVVAMNARFDVTILDRELARHGLPSLAE--QAG 124

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                L  ++    A                  KL DLA   G++  
Sbjct: 125 AEPLVLDPLVMDKRA----------EKYRRGGRKLVDLARHYGVQLG 161


>gi|38344168|emb|CAE03499.2| OSJNBa0053K19.7 [Oryza sativa Japonica Group]
 gi|116309750|emb|CAH66793.1| H0215F08.4 [Oryza sativa Indica Group]
 gi|125591688|gb|EAZ32038.1| hypothetical protein OsJ_16216 [Oryza sativa Japonica Group]
 gi|215712387|dbj|BAG94514.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 260

 Score = 70.6 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 57/214 (26%), Gaps = 27/214 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G      R  +FA    D           F      +         +  I
Sbjct: 61  TILVFDLETTGYFHKDHRIVEFA--LCDLSG---GKNSTFETLVNPERTVPDYVEHLIKI 115

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDS 117
                 R G+   ++    +  F             + +N  +FD  +    F R     
Sbjct: 116 GTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPL 175

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHD 176
                      +D L + +          +    +       L+ L    GI  H +AH 
Sbjct: 176 PA-----DWLFFDTLLLAK----------KMVKAEGKKRRTSLEALREHYGIVSHDDAHR 220

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
           A  DV     +   +        E L +   K  
Sbjct: 221 AMRDVMILSQVFQKMTFDLKLTNEELINEAMKAS 254


>gi|294636395|ref|ZP_06714781.1| ribonuclease T [Edwardsiella tarda ATCC 23685]
 gi|291090340|gb|EFE22901.1| ribonuclease T [Edwardsiella tarda ATCC 23685]
          Length = 221

 Score = 70.6 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A V +   D  W + +    F  +P +  +  PEA+   G
Sbjct: 20  VVIDVETAGFDANRNALLEIAAVTLRMNDAGWLETDQCLHFHIEPFEGAILSPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  +I  +N  FD  +      R    
Sbjct: 80  IDPHNPLRGAVSEYEALHAIFKVVRKGIKDQECNRAVIVAHNAHFDHSFLMAAAERAKLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    ++     +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ISAEIPFDSSQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 183 ALYDTQQTALLFCELVNR 200


>gi|126664190|ref|ZP_01735182.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
 gi|126623722|gb|EAZ94418.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
          Length = 202

 Score = 70.6 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 54/184 (29%), Gaps = 24/184 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V++D ET G D   DR      V ++     +      F       +   E+V I 
Sbjct: 31  KKRYVVFDCETTGLDYKSDRILSIGAVAIENNQIIVGDFMEVFLLQD---VFKAESVPIH 87

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI  ++   + +VEAE   R  +F        +  +++ FD         R         
Sbjct: 88  GIL-KEGKEEKIVEAEAIIRFLEFIKD---ATLVGHHVDFDIEMINQGLARL-------- 135

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                    L +               P          L +L     I   + H A  D 
Sbjct: 136 -----EVGKLKNQAMDTDVMYQKLKYLPQEQHS----SLDELCDIYKIRKSDRHTASGDA 186

Query: 182 YATL 185
           + T 
Sbjct: 187 FITA 190


>gi|124516571|gb|EAY58079.1| DNA polymerase III, epsilon subunit [Leptospirillum rubarum]
          Length = 265

 Score = 70.6 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 52/181 (28%), Gaps = 30/181 (16%)

Query: 1   MTNHFVIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   F+  D ET G    +  R  +          + +  T           +       
Sbjct: 1   MKVTFL--DVETTGLLRDSRARIIELGF-SSWENGKLLRKTSTL---IKGADIVPDNISK 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GIT +        E E  + I          ++  +N+ FD                 
Sbjct: 55  INGITTEMLKDAPRFE-EVWKSIK---GDIQGSLLVAHNLAFDVGMVNREL------ILA 104

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                GN   D L + R +                 +S++L ++A   GI + N H A  
Sbjct: 105 DRIPLGNMGIDTLPLSRKM-------------LPELSSYRLGEIAKHMGILNENPHRAMG 151

Query: 180 D 180
           D
Sbjct: 152 D 152


>gi|319944252|ref|ZP_08018528.1| exonuclease [Lautropia mirabilis ATCC 51599]
 gi|319742547|gb|EFV94958.1| exonuclease [Lautropia mirabilis ATCC 51599]
          Length = 230

 Score = 70.6 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 53/188 (28%), Gaps = 14/188 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G +V  D        R+  +            +P  +    P++V +  +  
Sbjct: 48  VALDCETTGLNVRQDEIIAIGATRIVGRRLMTRERLELLVRPEREV--SPDSVAVHRLRA 105

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q     G+   E   R+  F    +  ++GY          R +         +   +  
Sbjct: 106 QDVAD-GLPLCEAMERLLMFI--GSRPLVGYYLEFDVAMIDRALKRCFGLTLPQRKIEVS 162

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +D                 +   D+     +   +     +   +AHDA  D     
Sbjct: 163 AMYYDW---------RFRQLPPYQQHDNADIDLRFATILQTLDLPMRDAHDALNDAVMAA 213

Query: 186 ALVWLIRE 193
                +RE
Sbjct: 214 LAFIRLRE 221


>gi|116334989|ref|YP_802484.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii
           PV]
 gi|116235270|dbj|BAF35118.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii
           PV]
          Length = 181

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 46/144 (31%), Gaps = 10/144 (6%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
               +  D ET G  V   DR  +   V V           VF      +      A  +
Sbjct: 1   MKRIIFLDVETTGLFVEHGDRIIEIGCVEV-INGHLTGR--VFHSYFNPEVKITQGAFNV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI     L   +    F  +I++F    N   I  +N +FD  +     Y   +   + 
Sbjct: 58  HGIKDDFLLLKPM----FYEKINEFIGFINNSTIIAHNAKFDINFINKEIYLTNFKIKKI 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPD 144
              N  +  D L + R +Y    +
Sbjct: 114 --QNYANILDSLLLFRKLYPRKKN 135


>gi|312115401|ref|YP_004012997.1| DNA polymerase III subunit epsilon [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220530|gb|ADP71898.1| DNA polymerase III, epsilon subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 241

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 54/189 (28%), Gaps = 28/189 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  + A V +   +        ++     +     EA  I G+T
Sbjct: 4   LVLDTETTGLDPKSGHRIIELACVEL-HNYIPTGVFWHWYF--NPERSVPREATAIHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +     +  I +        I   +N  FD  +    F +  Y         
Sbjct: 61  DGFLADKPL-FGAIAPDIVKVLEGARLII---HNASFDVGFLNFEFQKLGYQQPISMERV 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +  SP+               L  L    GI++     H A  D  
Sbjct: 117 T----DTLALARRKHPGSPN--------------NLDALCRRYGIDNSTRTKHGALLDSE 158

Query: 183 ATLALVWLI 191
               +   +
Sbjct: 159 LLADVYLRL 167


>gi|50120858|ref|YP_050025.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043]
 gi|81827142|sp|Q6D5W0|RNT_ERWCT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|49611384|emb|CAG74831.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043]
          Length = 223

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 65/219 (29%), Gaps = 28/219 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D+    + + T  F  +P +  + +P A+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKDRGCNRAIIVAHNATFDHSFMAAAAERCSLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +      +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ITAGIAFDSSQAHS 182

Query: 177 AKADVYATLALVWLIREK--KPKLFEYLYDYRNKNQLRK 213
           A  D   T  L   +  +  +   +    +  +      
Sbjct: 183 ALYDTNQTALLFCELVNRWKRLGGWPLALEESSLEDTSA 221


>gi|134046188|ref|YP_001097673.1| exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
 gi|132663813|gb|ABO35459.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
          Length = 189

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 14/189 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G +    + AQ + +  D     I+  E  + K       +P+A  + G++ 
Sbjct: 3   VFLDTETTGLEP--GQIAQISYIISDDDLN-IQKAENIYFKVKS---MEPKAQSVHGLSI 56

Query: 66  QKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF--YDSYRWS 121
           +K     +G   A+ S +I    +     I+  +N+ FD  +  + F R    YD  ++ 
Sbjct: 57  EKLESLSEGKSFADHSTQILDDINQK---ILICHNVPFDYKFLNSEFVRCGIEYDPKKFC 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             N  +    +          P   +         S  L++     G      HD++ D 
Sbjct: 114 TMNHYTNLCGIPNPYRPGYKWPRLEETLDFLSIEKSEVLKNALNLFGNTTG-FHDSRFDS 172

Query: 182 YATLALVWL 190
                +   
Sbjct: 173 MGLFMIYKE 181


>gi|304440352|ref|ZP_07400241.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371104|gb|EFM24721.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 296

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 68/194 (35%), Gaps = 30/194 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV  D ET G D   ++  +   ++ D +       E F      D       + +TG
Sbjct: 127 KTFVFLDIETDGLDEKTNKIIEIGAIKSDSK-------EEFHKIVKIDTKLPKNIIELTG 179

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT ++    G    E  + + +F  + +   +    I+FD  +       N  D      
Sbjct: 180 ITDKEL-ESGENIKEILKELKEFIGLED---LVGYGIKFDIKFINRKLKLNGLDVL---- 231

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              N  WDL+D ++   +F  +             +KL+ +    GI+    H A  D  
Sbjct: 232 --TNKTWDLMDFVKREKSFLEN-------------YKLETVLKEYGIDKKVPHRALEDSK 276

Query: 183 ATLALVWLIREKKP 196
               L   +++ + 
Sbjct: 277 LIYELSEKVQKFQE 290


>gi|311745409|ref|ZP_07719194.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
 gi|126577956|gb|EAZ82176.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
          Length = 223

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 76/206 (36%), Gaps = 21/206 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG- 62
            FV+ D ET G + ++D    F  V+++ Q  +I +   ++ K +     D + + + G 
Sbjct: 38  SFVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWYLKSSKK---DFKTIPVHGL 94

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  ++A    V   +F++R+ ++F      I+  +++ FD             D  +   
Sbjct: 95  IGNEEA----VPLEQFAKRVLEYFENN---ILVGHHLGFDLEMLEKALKPFGLDKIQNKC 147

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +  S    LD           G+           + L  L     I+  + H A  D +
Sbjct: 148 IDTMSLAIRLD----------HGLMADRNYIDFKDYSLDSLCQRYDIKTDDRHTAGGDAF 197

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208
            T  L+  + +   K     +    K
Sbjct: 198 LTANLLLKLLKAAQKKGIMNWGTLRK 223


>gi|229060993|ref|ZP_04198347.1| exonuclease [Bacillus cereus AH603]
 gi|228718362|gb|EEL69996.1| exonuclease [Bacillus cereus AH603]
          Length = 221

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 36/135 (26%), Gaps = 11/135 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FVI D ET G     D+  + + +  D   + +                  EA  I G
Sbjct: 63  DQFVILDTETTGL-TLRDQIIEISVI--DLAGKIL-----LDSLVKPTTNIPAEAASIHG 114

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +             + + +        ++ YN               N       S 
Sbjct: 115 ITNEMVHDAP-SWTAIYKELREV--TVGKTLLIYNAEFDLGMIENTCIANNVEFKNFKST 171

Query: 123 DNGNSRWDLLDVMRA 137
                  D +D  R 
Sbjct: 172 CIMEMYVDYVDSKRW 186


>gi|227328518|ref|ZP_03832542.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 223

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 28/219 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D+      + T  F  +P +  + +P A+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLKPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +      +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ITAGIAFDSSQAHS 182

Query: 177 AKADVYATLALVWLIREK--KPKLFEYLYDYRNKNQLRK 213
           A  D   T  L   +  +  +   +    +  +      
Sbjct: 183 ALYDTNQTALLFCELVNRWKRLGGWPIALEENSLEDASA 221


>gi|42523607|ref|NP_968987.1| DNA polymerase III subunit epsilon [Bdellovibrio bacteriovorus
           HD100]
 gi|39575813|emb|CAE79980.1| DNA polymerase III polC-type [Bdellovibrio bacteriovorus HD100]
          Length = 295

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 60/185 (32%), Gaps = 33/185 (17%)

Query: 7   IYDYETFGRDVALDRPAQFAG--VRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           I D ET G +   D   +        ++   E +  T+ +           PE   +TGI
Sbjct: 48  ILDVETTGLNQTEDTIIEIGIRQFLFNKNSGEVLAVTKSYSSFQDPGKPISPEIQALTGI 107

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +      +        +++        +I  +N +FD  +                  
Sbjct: 108 TDEMVAGKQIDWTAVDALLNE------CQLIIAHNAKFDRPF------------------ 143

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D          ++    Q    D G TS KL+ L + +G    ++H A  DV A
Sbjct: 144 -----IDRRSKTSPERVWACSFKQVEWSDKGFTSPKLELLNIYHGF-FTDSHRAINDVDA 197

Query: 184 TLALV 188
            L L+
Sbjct: 198 LLYLL 202


>gi|305666543|ref|YP_003862830.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88708810|gb|EAR01045.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 222

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 58/187 (31%), Gaps = 23/187 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+++D ET G D+  DR      + V      I  +   + K     +   E+V I GI 
Sbjct: 34  FIVFDTETTGLDIVNDRILSIGAISVFSGKLDIGDSLEIYLKQK---IFKAESVEIHGIL 90

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            + ++     E      I  F       I+  ++  FD         R      +    +
Sbjct: 91  KEGSIEKHTEE----EAIISFLKYIENGILVAHHAAFDIAMINAGLRRMGLPKLKNKVLD 146

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               +                 +    +D    + L  L+      + + H +  D + T
Sbjct: 147 TGVLF----------------KKTTLCEDKNKIYSLDYLSGIFKFRNHDRHTSSGDAFLT 190

Query: 185 LALVWLI 191
             ++  I
Sbjct: 191 GMILLKI 197


>gi|294628378|ref|ZP_06706938.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831711|gb|EFF90060.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 242

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  D          V             EA  + G+T ++
Sbjct: 13  FDTETTGVDVETDRIVSAAVVVQDAPGT---RPRVSRWLVNPGVPVPREATAVHGLTEER 69

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             R G   A     I +  +        ++  N   FD         R+   S    ++ 
Sbjct: 70  LQRTGRWPAPVMYEIAEQLAEQAARGRPLVVMNAP-FDLTLLDRELRRHRASSLERWFEG 128

Query: 125 GNSRW 129
              R 
Sbjct: 129 SPLRV 133


>gi|94676582|ref|YP_588911.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|94219732|gb|ABF13891.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 240

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 62/231 (26%), Gaps = 33/231 (14%)

Query: 2   TNHFVIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
               ++ D ET G +         R  +   V +            F      +   D E
Sbjct: 1   MKRQIVLDIETTGINKLGVHYYGHRIIEIGAVEI-INRRITGK--NFHVYLNPERFIDQE 57

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A  I GI+           A+ + ++  F S      +  ++  FD  +    F      
Sbjct: 58  AFKIHGISNNFLKDKP-TFAQVADKLITFISQSE---LVIHHAPFDIGFIDYEFKLLNRS 113

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
               ++       D L + R I+                    L  L     I+  H   
Sbjct: 114 MISKTFVQVT---DTLLLARKIFPG--------------KRNSLDALCNRYHIKNIHRTK 156

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
           H A  D      +  ++   +  +   L    N    +K        PL H
Sbjct: 157 HGALLDAKILAEIYLIMTGGQTSINFNLTQESNIE--QKYKGKNIYFPLSH 205


>gi|328881184|emb|CCA54423.1| putative DNA polymerase III [Streptomyces venezuelae ATCC 10712]
          Length = 242

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 31/109 (28%), Gaps = 7/109 (6%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  D          V              A  + G+T   
Sbjct: 13  FDTETTGVDVEEDRIVSAALVVQD---TVGARPRVTRWLVNPGIPVPEGATAVHGLTDDH 69

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
             R G   A     + +  +        ++  N   FD         R+
Sbjct: 70  LQRYGRWPAPVMEELARALAEQIAAGRPLVVMNAP-FDLTILDRELRRH 117


>gi|229187939|ref|ZP_04315044.1| exonuclease [Bacillus cereus BGSC 6E1]
 gi|228595536|gb|EEK53251.1| exonuclease [Bacillus cereus BGSC 6E1]
          Length = 181

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 39/135 (28%), Gaps = 11/135 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FVI D ET G     D+  +   +  D   + +                  EA  I G
Sbjct: 23  DQFVILDTETTGL-TLRDQIIEICVI--DLTGKIL-----LNSLVKPTINIPAEAASIHG 74

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +K         E  + + +  +     ++ YN            F  N       S 
Sbjct: 75  ITNEKVHDAP-SWIEIYKELCEVTA--GKTLLIYNAEFDLGMIESTCFANNVEFKNFKST 131

Query: 123 DNGNSRWDLLDVMRA 137
                  D +D  R 
Sbjct: 132 FIMKMYADYVDSKRW 146


>gi|120536881|ref|YP_956939.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
 gi|120326715|gb|ABM21024.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 291

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 60/194 (30%), Gaps = 39/194 (20%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEVFFCKP----ADDYLPDPEAVF 59
           V  D ET G     D+  +    +  VD                       +        
Sbjct: 48  VWLDCETTGFQAGHDKIIELGLTKGYVDP---ITGELISLVASVSFYEDPGFPLPEIITQ 104

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           ITGIT +     G        ++ ++F+     I+  +N  FD  +              
Sbjct: 105 ITGITDEMV--SGRTIDGV--QVREWFTDDP--IVVAHNASFDRPFFE------------ 146

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                  SR+ +LD +R     +      P ++ G  S KL+ L    G  +   H A  
Sbjct: 147 -------SRFPMLDQLRW----ACSMKDIPWQEYGFESTKLEYLLYRLGYFYEG-HRASI 194

Query: 180 DVYATLALVWLIRE 193
           D  AT  L+  +  
Sbjct: 195 DAIATAFLMSQVPR 208


>gi|227832929|ref|YP_002834636.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453945|gb|ACP32698.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 233

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET        R    A VR+D    +++  E+             EA  I GIT +K
Sbjct: 21  FDLETTSVKPKEARIVTSALVRID--GREVDKREMLA---DPGVEIPEEAAKIHGITTEK 75

Query: 68  ALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFD 102
           A  +G    E  +     I+Q +      +I YN     
Sbjct: 76  ARAEGRPHEEVLKETVDSIYQAWDE-GLTLIVYNAAYDL 113


>gi|254522635|ref|ZP_05134690.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
 gi|219720226|gb|EED38751.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
          Length = 243

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 58/196 (29%), Gaps = 26/196 (13%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    +R  +   V     +++  +   +      D   +  A  +TG+T
Sbjct: 4   IILDTETTGLEWKKGNRIVEIGCV---ELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+ +     F       I   +N  FD  +  N    +          +
Sbjct: 61  LEFLDDKPG-FAQIADEFLAFIDGAELII---HNAAFDLGFLDNEL--SLLGPQYGKITD 114

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
             +  D L + R  +    +               L  L    G++  H   H    D  
Sbjct: 115 RCTVIDTLAMARERFPGQRN--------------SLDALCKRLGVDNSHRALHGGLLDAQ 160

Query: 183 ATLALVWLIREKKPKL 198
               +   +   + ++
Sbjct: 161 ILGDVYIALTSGQEEI 176


>gi|325127521|gb|EGC50447.1| oligoribonuclease [Neisseria meningitidis N1568]
 gi|325129519|gb|EGC52346.1| oligoribonuclease [Neisseria meningitidis OX99.30304]
 gi|325201497|gb|ADY96951.1| oligoribonuclease [Neisseria meningitidis M01-240149]
 gi|325207477|gb|ADZ02929.1| oligoribonuclease [Neisseria meningitidis NZ-05/33]
          Length = 187

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 4   KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 64  THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|298369358|ref|ZP_06980676.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283361|gb|EFI24848.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 240

 Score = 70.2 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   +I D ET G      DR  +FAG+ +    +  ++    +  P  D     EA  
Sbjct: 1   MSKRQIILDTETTGLYAEGGDRLVEFAGLEM-INRQMTDNNLHLYIHPERDM--PEEAAK 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          AE  R+I  F       I   +N +FD  +    F R    S 
Sbjct: 58  VHGLTIEVLEEKNAPPFAEVGRQIADFIRDAELII---HNAKFDIGFLNMEFRRMGLPSI 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRLSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRQQ 176


>gi|308389962|gb|ADO32282.1| putative oligoribonuclease [Neisseria meningitidis alpha710]
          Length = 215

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 32  KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 91

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 92  THGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 151

Query: 115 YDSYRW 120
              +  
Sbjct: 152 NYFHYR 157


>gi|297250280|ref|ZP_06863987.2| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839296|gb|EFH23234.1| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 253

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 10  MIQRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYVHPERDM--PEEAAR 66

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          AE  R+I  F       I   +N +FD  +    F R    + 
Sbjct: 67  VHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 123

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 124 EE---LGCTVTDTLAMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 166

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 167 ALIDCELLGEVYLAMTRRQ 185


>gi|46255199|ref|YP_006111.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27]
 gi|46198048|gb|AAS82458.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27]
          Length = 1649

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 63/187 (33%), Gaps = 24/187 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D E    D +     + A V  D +            +P     PD E   +TGI  
Sbjct: 9   VALDLEATSTDPSEAEVLEVAAV--DGEGRVFHRYLATQ-RPLP---PDHEVFQLTGIPY 62

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++     V   E    +  F       ++G+N +R+D    +                  
Sbjct: 63  EEYEAKKVAPKEALEELLAFL--GGRPLLGHNLLRYDLPLLQRHLEEAGLP--------- 111

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKADVYAT 184
             + + LD +R  +        +P+   G   ++L DL A   G     AH A  D  AT
Sbjct: 112 RWQGEALDTLRLAHLL------FPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQAT 165

Query: 185 LALVWLI 191
           LA+   +
Sbjct: 166 LAVFHRL 172


>gi|55978361|ref|YP_145417.1| hypothetical protein TTHB178 [Thermus thermophilus HB8]
 gi|55773534|dbj|BAD71974.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 296

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 63/187 (33%), Gaps = 24/187 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D E    D +     + A V  D +            +P     PD E   +TGI  
Sbjct: 9   VALDLEATSTDPSEAEVLEVAAV--DGEGRVFHRYLATQ-RPLP---PDHEVFQLTGIPY 62

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++     V   E    +  F       ++G+N +R+D    +                  
Sbjct: 63  EEYEAKKVAPKEALEELLAFL--GGRPLLGHNLLRYDLPLLQRHLEEAGLP--------- 111

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKADVYAT 184
             + + LD +R  +        +P+   G   ++L DL A   G     AH A  D  AT
Sbjct: 112 RWQGEALDTLRLAHLL------FPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQAT 165

Query: 185 LALVWLI 191
           LA+   +
Sbjct: 166 LAVFHRL 172


>gi|321309652|ref|YP_004191981.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801496|emb|CBY92142.1| DNA polymerase III, alpha subunit, Gram-positive type (fragment)
           [Mycoplasma haemofelis str. Langford 1]
          Length = 216

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 32/192 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEAVFIT- 61
           + + D ET G         + +  +  R  ++++    F    +P       P     T 
Sbjct: 20  YCVLDIETTGTSYKTSEITEISIHKY-RNGKRVDKYHSFVKISRPLP-----PFIRIFTP 73

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            IT +   R+G       + +  F     + ++ +N + FD  + +    +         
Sbjct: 74  HITDELLAREGKDLDVVIKEVKDFTK--GSILVAHNGVTFDLLFLKAACIKYGLKPLSNP 131

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKA 179
                    ++D +R             S         L D+        +   AH A  
Sbjct: 132 ---------IIDTLRLSR----------STFPNERYHTLGDVCRRMQVNYDEDRAHSADY 172

Query: 180 DVYATLALVWLI 191
           DV     + W  
Sbjct: 173 DVDVLWQVFWNF 184


>gi|238919999|ref|YP_002933514.1| ribonuclease T [Edwardsiella ictaluri 93-146]
 gi|238869568|gb|ACR69279.1| ribonuclease T, putative [Edwardsiella ictaluri 93-146]
          Length = 221

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 57/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A V  R++     + +    F   P +     PEA+   G
Sbjct: 20  VVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHIDPFEGAELSPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E      I +           N  ++  +N  FD  +      R    
Sbjct: 80  IDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAARAGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    ++     +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ISAQIPFDSAQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 183 ALYDTQQTATLFCELVNR 200


>gi|296139064|ref|YP_003646307.1| exonuclease RNase T and DNA polymerase III [Tsukamurella
           paurometabola DSM 20162]
 gi|296027198|gb|ADG77968.1| Exonuclease RNase T and DNA polymerase III [Tsukamurella
           paurometabola DSM 20162]
          Length = 198

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 54/203 (26%), Gaps = 35/203 (17%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M +  V  D E  G D+  DR  + A +  D     +           D  L    P   
Sbjct: 1   MDDKLVWVDCEMTGLDLTSDRLIEIAALVTDGDLNILGEGVDLVIHVDDAALDAMPPVVQ 60

Query: 59  FIT---GITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYR 112
            +    G+T +   R  V   E    +  +      P T  +  N+I  D  +       
Sbjct: 61  DMHAKSGLTDE-VRRSTVTVREAEEAVLAYLREHIEPGTVPLAGNSIATDRRFIAQEM-- 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                      +G   + ++DV            +                         
Sbjct: 118 --------PELDGFLHYRMVDVSSIKELCRRWYPRIYFGQPDK----------------G 153

Query: 173 NAHDAKADVYATLALVWLIREKK 195
            AH A AD+  ++  +   R   
Sbjct: 154 LAHRALADIRESIRELKYYRSTA 176


>gi|329964271|ref|ZP_08301372.1| exonuclease [Bacteroides fluxus YIT 12057]
 gi|328525576|gb|EGF52619.1| exonuclease [Bacteroides fluxus YIT 12057]
          Length = 168

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 28/196 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V ++ E  +S      +P  +Y        + 
Sbjct: 1   MRNFAAIDFET--ANEQRCSVCSVGVVIV-KEGEITDSYYSLI-RPEPEY-YTYWTTRVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T        V   +  R I           +  +N  FD+         +   +   +
Sbjct: 56  GLTLADTAGAPV-FPDVWREIAPRIE---GLPLVAHNKAFDE---------SCLKAVFRT 102

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      +D    ++A                G   ++L  +A   G +    H+A AD 
Sbjct: 103 YSMDYPDYDFYCTLQASRRV----------IKGLPDYQLHTVAACCGYKLERHHNALADA 152

Query: 182 YATLALVWLIREKKPK 197
            A   +   +     +
Sbjct: 153 EACAWIAKAVFFTANE 168


>gi|254818513|ref|ZP_05223514.1| DNA polymerase III subunit epsilon [Mycobacterium intracellulare
           ATCC 13950]
          Length = 330

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 69/252 (27%), Gaps = 32/252 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D   E  +S             P P    + G+T  
Sbjct: 19  VIDVETSGFRPGQARIISLAVLGLDADGEVEQSVVSL---LNPGVDPGP--THVHGLTAA 73

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD                   +    
Sbjct: 74  MLEDQPQ-FADIAPDVIDVLR---GRTLVAHNVAFD-------------------YAFLA 110

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
           +  +L D+   + +           D G  + +L+ LA    +     HDA  D      
Sbjct: 111 AEAELADIELPVDSVMCTVELARRLDLGVDNLRLETLAAHWSVTQERPHDAFDDAMVLTG 170

Query: 187 LVWLIRE--KKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           ++    +  +   ++  ++    +      +    + PL  ++               V 
Sbjct: 171 VLASALKLARDGDVWLPVHPVTRRRWPNGRVTHDELRPLKVLASRMP--CPYLNPGPYVG 228

Query: 245 WHPRYKDSVIGC 256
             P  +   +  
Sbjct: 229 GRPLVQGMRVAL 240


>gi|52841614|ref|YP_095413.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628725|gb|AAU27466.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 251

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 33/215 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           VI D ET G       R  +   +      E I+       F          D  A  + 
Sbjct: 22  VILDTETTGIGPEQGHRVIEIGCI------ELIDRKLTGKHFHIYLNPQREVDEGAFRVH 75

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +      +   +      QF       I   +N  FD  +  +         +  +
Sbjct: 76  GISTEFLQDKPL-FQDIVTEFIQFVEGSELII---HNAPFDVGFLNSELKHV---KWNKT 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
            ++     D L + R  +    +               L  L     I+H N   H A  
Sbjct: 129 LEDYCRILDTLILAREKHPGQRN--------------SLDALCKRYEIDHFNRELHGALL 174

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
           D      +   +   +  LF  +    ++++++  
Sbjct: 175 DAEILAYVYLAMTGGQSSLFTEVESSLSQSKIKTQ 209


>gi|25027895|ref|NP_737949.1| DNA polymerase III subunit epsilon [Corynebacterium efficiens
           YS-314]
 gi|259506288|ref|ZP_05749190.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|23493178|dbj|BAC18149.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166068|gb|EEW50622.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 252

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 49/187 (26%), Gaps = 30/187 (16%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET   +    R    A V +        +                 A  + GIT + 
Sbjct: 40  FDLETTAANPFEARIVTSAMVTITNAG---ATPLELLA--DPGVEIPEGATAVHGITTEY 94

Query: 68  ALRDGVVEAEFSRR-IHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A   G    E     I +          +I YN         R                +
Sbjct: 95  AREHGQPHEEVLAETIRRIQEGWGNNQALIVYNAPYDLTVLRR---------------LS 139

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G+   D L        + P  +             L DL     ++  NAH+A +D  A 
Sbjct: 140 GDFTIDGL-------VYDPYTVDRIKDPYRKGKRTLADLCAHYEVQLGNAHEATSDALAA 192

Query: 185 LALVWLI 191
             + W  
Sbjct: 193 ARIAWKQ 199


>gi|119774662|ref|YP_927402.1| DNA polymerase III subunit epsilon-related 3'-5' exonuclease-like
           protein [Shewanella amazonensis SB2B]
 gi|119767162|gb|ABL99732.1| DNA polymerase III epsilon subunit-related 3'-5' exonuclease-like
           protein [Shewanella amazonensis SB2B]
          Length = 228

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 20/179 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D E  G D   D+      V +D    +++  E    +         ++  I GIT 
Sbjct: 44  LALDLEMTGLDPGRDQILAIGVVPIDGGIIQLQGAESVLVEIQGSV---GQSAVIHGITD 100

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++     +  A+    + Q     N  I+  ++   D  + R    R+            
Sbjct: 101 RELHNA-LPLADAMNWLMQKM---NGRILVAHHAPLDLAFIRANMSRSL------GISMP 150

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               D L + R       D I          S +L       G+   +AH+A  D  + 
Sbjct: 151 MLAIDTLALERQRLLRIHDAI-------QEGSLRLGASRQRYGLPVYDAHNALTDALSC 202


>gi|299133202|ref|ZP_07026397.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
 gi|298593339|gb|EFI53539.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
          Length = 230

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 54/186 (29%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V     +  + + + +      +     EA  + G++
Sbjct: 4   IVLDTETTGLDALRGDRLVEIGCV---EMFNHMPTGQTYHVYINPERDMPQEAFAVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +    F+     F +      +  +N  FD  +      R    +       
Sbjct: 61  SEFLSDKPL----FAAVAEDFLTFIGDAPLIIHNASFDIGFINMELERVKRAAIPRERL- 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                D L + R  +                 S +L DL     I++     H A  D  
Sbjct: 116 ----VDTLLLARRKHPG--------------VSNRLDDLCSRYAIDNSRRTKHGALLDAE 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|171059184|ref|YP_001791533.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170776629|gb|ACB34768.1| Exonuclease RNase T and DNA polymerase III [Leptothrix cholodnii
           SP-6]
          Length = 218

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 51/188 (27%), Gaps = 14/188 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G DV  D       VR+               +P    L   ++V +  +  
Sbjct: 42  VALDCETTGLDVGRDEIIAIGAVRIVGNRIMTSERLELLVRPEKRKL-SADSVRVHRLRE 100

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q     G+   E   ++  F    +  ++GY         +R  +        +   +  
Sbjct: 101 QDVA-QGLKPEEAVMQLMHFI--GSRPLVGYYLEFDLAMINRVAWPMLGMGLPQPRIEVS 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +   D        Y           +       +   L     +   +AHDA  D     
Sbjct: 158 SLYHDYKHRQLLPY----------QQQSVNIDLRFDTLMKDLDLPQRDAHDALNDAVMAA 207

Query: 186 ALVWLIRE 193
                +R 
Sbjct: 208 LAYLKLRR 215


>gi|313768210|ref|YP_004061890.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1]
 gi|312598906|gb|ADQ90930.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1]
          Length = 443

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 35/207 (16%)

Query: 5   FVIYDYETFGRD-------------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           ++ +D+ET G                   R    +  R   +   +++ +       +D+
Sbjct: 6   YIAFDFETSGLPEGRRPVTPETLHQFDSCRAVSLSAARFSSRGRLVDTFDAIVY--PNDF 63

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
                ++ + GIT Q+A R+G    E      +F   P T  +  +N +FD    R+   
Sbjct: 64  QISQGSIDVHGITQQRAEREGRPFTEVFLDFVRFIG-PRTTTMVAHNAKFDTSVLRSEMI 122

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIE 170
           R+  D +     N     +L                   R+      KL  L     G  
Sbjct: 123 RHRLDLHLIENLNFRCTMEL------------------YRERFLKPIKLGVLYEQIFGQP 164

Query: 171 HVNAHDAKADVYATLALVWLIREKKPK 197
             NAH++ AD  A   +   I   +  
Sbjct: 165 FENAHNSLADCIACGRVYPYIIGHERT 191


>gi|295096042|emb|CBK85132.1| RNAse T [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 219

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 63/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLVPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +        +  +  I+  +N  FD  ++     R    
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKMVRKGMKENDCSRAIMVAHNATFDHSFTMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      +      +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACITAGIAFDGTQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTERTAELFCEIVNR 200


>gi|210622633|ref|ZP_03293293.1| hypothetical protein CLOHIR_01241 [Clostridium hiranonis DSM 13275]
 gi|210154134|gb|EEA85140.1| hypothetical protein CLOHIR_01241 [Clostridium hiranonis DSM 13275]
          Length = 273

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 66/219 (30%), Gaps = 32/219 (14%)

Query: 1   MTNHFVIYDYETF-GRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           M   ++++D E   G +   +             Q   V++D  +  I + + F  KP  
Sbjct: 4   MME-YIVFDLEFNQGFNKKTNKTFSDNACPFEIIQLGAVKLDSNFNIIAAFDTFI-KPCL 61

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
                P    ITGI  +          E  ++  +F +  +     +             
Sbjct: 62  YTSMHPYVAKITGICMEDLENAP-TFKEAFKKFTEFVASDDPIFCVWGKSDLR------E 114

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
            YRN             S  D+                       A S  L++  +A  +
Sbjct: 115 LYRNIKYHNLPDLSLPKSYIDVQYYASDF-----------INHTTAQSIGLENAVIALNL 163

Query: 170 EHVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
           E   A H+A  D Y T  +   I  K  K   Y+Y   +
Sbjct: 164 EDTVAYHNALNDAYYTAKVFASINPKAIKPNIYIYTNLS 202


>gi|260221145|emb|CBA29417.1| DNA polymerase III subunit epsilon [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 236

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 72/237 (30%), Gaps = 33/237 (13%)

Query: 6   VIYDYETFGRDVAL----DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G         DR  +   V  V+R+     +              D  A+ +
Sbjct: 4   IVLDTETTGFYANHPDNPDRMVEIGCVELVNRKL----TGNNLHFYLNPGRDSDEGALRV 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G+T Q        E E ++++  +        I  +N  FD  +      R     ++ 
Sbjct: 60  HGLTTQFLSDKPRFE-EIAQQLVDYV---GGAEIIIHNAPFDLSFLDMELGRTGRKPFKT 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
                    D L + + ++                    L  L     +++     H A 
Sbjct: 116 CVAG---VLDTLVMAKEMFPG--------------KRNSLDALCDRLEVDNSGRTLHGAL 158

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT-PLVHVSGMFGASR 234
            D      +   +   +  L       +    + + +D++++  P++  +    A+ 
Sbjct: 159 LDAELLADVYINMTRGQDALIMESSAPQEAGIVVEQLDLRSIQLPVLEANAQEMAAH 215


>gi|145588723|ref|YP_001155320.1| DNA polymerase III subunit epsilon [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047129|gb|ABP33756.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 218

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 50/188 (26%), Gaps = 16/188 (8%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +VA D+      V++               KP  +     E+V I  +  
Sbjct: 43  VVIDCETTGLNVAQDQIISIGAVKIVGNQLITSERLELLVKPDKEV--SAESVKIHRLRE 100

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                    E   ++          +  I    + FD      I +R             
Sbjct: 101 LDIANGLDPEVAVAK----LMQFIGSRPIVGYYLEFDMAMLHKIIWRMLGQGLPQPKIEV 156

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           ++ +      +                      +   L     +   +AHDA  D   T 
Sbjct: 157 SAMYYEYKNAQLPINLRGQM----------IDLRFDTLMKDLNLPVRDAHDALNDAVMTG 206

Query: 186 ALVWLIRE 193
                +R+
Sbjct: 207 MAFIKLRQ 214


>gi|329120336|ref|ZP_08249004.1| oligoribonuclease [Neisseria bacilliformis ATCC BAA-1200]
 gi|327462677|gb|EGF09000.1| oligoribonuclease [Neisseria bacilliformis ATCC BAA-1200]
          Length = 184

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+    D E  G     DR  + A +  D     +  + V+    +D+ L   D      
Sbjct: 7   NNLCWLDMEMTGLSPETDRIIEVAVIITDSDLNVLAQSPVYAVHQSDEVLDAMDEWCTAT 66

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTC---IIGYNNIRFDDYYSRNIFYRNFY 115
            G T   Q+       EAE  + +  F +         +  N++  D  + +    R   
Sbjct: 67  HGRTGLTQRVRESQYTEAEVEQNLLDFIAAWIPAQASPMCGNSVHQDRRFMQKYMPRLEA 126

Query: 116 DSYRW 120
             +  
Sbjct: 127 YFHYR 131


>gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 475

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 27/200 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D ET G     D   + A + V ++   +   +        D    P  V +TGI+
Sbjct: 18  FAILDVETTGAASGADELTEVAMMVV-QEGRALAHLQSL---VHTDRPIPPAIVALTGIS 73

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +              R  +        ++  +N+RFD  +                   
Sbjct: 74  NELVADAP-SARTVIERTARLLE---GTVMVGHNVRFDRSFLGAAADAAGI--------- 120

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +LD +                D    + +L  LA    +    +H A ADV  T
Sbjct: 121 TLPEVPVLDTLTLSRVLL---------DGEVPNHRLATLAHYLQLPP-PSHRAMADVVTT 170

Query: 185 LALVWLIREKKPKLFEYLYD 204
           +AL+  + E+   L     +
Sbjct: 171 VALLHRLIERAGALGVTTLE 190


>gi|183598873|ref|ZP_02960366.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827]
 gi|188021081|gb|EDU59121.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827]
          Length = 213

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 63/200 (31%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D+      + T  F  +P +    +P A+  TG
Sbjct: 20  VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSPDETLHFHVEPFEGANLEPAALAFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  II  +N  FD  +  N   R    
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKMVRKGMKATDCNRAIIVAHNATFDHSFVMNAAERAGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            I             L    +A GI      A
Sbjct: 140 ------RNPFHPFATFDTAALSGLVFGQTI-------------LAKACVAAGIPFDGKQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  K
Sbjct: 181 HGALYDTNRTALLFCELVNK 200


>gi|295089927|emb|CBK76034.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Clostridium cf. saccharolyticum K10]
          Length = 347

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 29/238 (12%)

Query: 2   TNHFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
             H+++ D E      GR+ ++DR      +   V++D     +        +P      
Sbjct: 1   MGHYIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEF-SRLVRPQVYRTL 59

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
             +   +T +T ++  R+G       +   +FF               D    +     +
Sbjct: 60  HYKISEVTHLTAEQLEREGQKFETAVK---EFFDWCGNDCRFCTWGSMDLTELQRNMVYH 116

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             +     +      +DL  +             +           L    L  GIE   
Sbjct: 117 GME---LPFQKPLYYFDLQKI-------------YSLIQGNTKRESLDTAVLEMGIEEER 160

Query: 174 A-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
             H A  D + T  ++  +       +  +  Y+      + I ++       VS  +
Sbjct: 161 PFHRALDDAWYTGLVMGKMNFYSMMEYISVDYYQTPETEEEEIYLEFPDYSKFVSRTW 218


>gi|320539160|ref|ZP_08038831.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson]
 gi|320030798|gb|EFW12806.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson]
          Length = 248

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D     + + T  F  +P +     PEA+   G
Sbjct: 52  VVIDVETAGFNAKTDALLEIAAVTLKMDEGGWLQQDETLHFHVEPFEGANLQPEALAFNG 111

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 112 IDPHNPLRGAVSEYDALHAIFKTVRAGIKHRGCNRAIIVAHNANFDHSFLMAAAERASLK 171

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L     A G+      A
Sbjct: 172 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACTAAGMPFDSSQA 212

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 213 HSALYDTEQTALLFCELVNR 232


>gi|323344490|ref|ZP_08084715.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269]
 gi|323094617|gb|EFZ37193.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269]
          Length = 899

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 21/213 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-TGI 63
            VI+D ET G  V  D   Q A V + R   ++     F    A +     +   I   I
Sbjct: 518 IVIFDTETTGLSVFEDDILQIAAVTICRG--EVVRGSEFKVFIATEREIPRKLGDIDNPI 575

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +      +  AE  +    F +      +  +N  +D +       R           
Sbjct: 576 IEEMKHNRLLGHAEALQL---FMNYVGDRTLLGHNADYDYHILDYNLRRYL--------- 623

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   + +      +          +     +KL+ L     +E  N+H A ADV+A
Sbjct: 624 ------PQVSLAERCPKYFDSLKLIRLLEPDLREYKLKYLLSVLHLEGENSHLADADVHA 677

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
           T  +V     K   +      +  + ++++  +
Sbjct: 678 TCNVVAHCYRKAADIIGSQRQFIVQKRVQERAE 710


>gi|283785135|ref|YP_003365000.1| ribonuclease T [Citrobacter rodentium ICC168]
 gi|282948589|emb|CBG88180.1| ribonuclease T [Citrobacter rodentium ICC168]
          Length = 214

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 65/209 (31%), Gaps = 26/209 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNARTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNNPLRGAVSEYDALHAIFKMVRKGIKDNGCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      LA     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGTQAHS 182

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDY 205
           A  D   T  L   I  +  +L  +    
Sbjct: 183 ALYDTERTAVLFCEIVNRWKRLGGWPLAT 211


>gi|213965286|ref|ZP_03393483.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
 gi|213952138|gb|EEB63523.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           amycolatum SK46]
          Length = 545

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 59/193 (30%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63
           F  +D ET   +       Q   V V R  +  E    + C+P        EA V I GI
Sbjct: 166 FAAFDVET--ANEDTGSIIQLG-VAVVRGGKVTERY-SWMCRPPKGLEYFDEANVAIHGI 221

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T      +     E   ++ +F  V     +  +N RFD              +      
Sbjct: 222 TAADVAGEP-SFPE---QLAKFVDVVGDLDVVAHNARFDFTALSRACRAEGIPA------ 271

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               + +                       G  + KL  LA A G    N HDA AD  A
Sbjct: 272 ---PKLNFACTYMWARQM----------QLGLPNLKLPTLAEAAGASLENHHDATADAVA 318

Query: 184 TLALVWLIREKKP 196
              +   + E++ 
Sbjct: 319 CAEVALWLMEQQR 331


>gi|238898583|ref|YP_002924264.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466342|gb|ACQ68116.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 221

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 63/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V   +D++    IE +  F  +P      +PEA+   G
Sbjct: 27  VVIDVETAGFNTKTDALLEIAAVTLFMDKEGWLHIEQSMHFHVEPFSGANFEPEALAFNG 86

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LRD   E E  ++I ++             II  +N  FD  +  N   R    
Sbjct: 87  IDPHSPLRDAKSEFEVLKKIFKWVQKGMKEQYCKRAIIVAHNAGFDHAFVMNAAKRTGLK 146

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L  +       +                    L      +   AH 
Sbjct: 147 QNPFHPFSTFDTAALSGLALGQTVLAKAC-----------------LTAGLNFDMSRAHS 189

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 190 ALYDTQQTARLFCELVNR 207


>gi|325978714|ref|YP_004288430.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178642|emb|CBZ48686.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 827

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 29/203 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  + I D E  G   A+    Q   V ++   E +++ +                + +T
Sbjct: 6   SQKYAIVDLEATGAH-AMAEIIQVGIVIIEND-EIVKTYQT---DVNPHEALSEHIINLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++  +     ++ ++ +         C+   +N++FD        +          
Sbjct: 61  GITDEQLAKAP-DFSQVAQEVFSLIED---CVFVAHNVKFDANLLAEQLFMEG------- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           ++    R D +++ +  Y                  + L +LA A  ++  +AH A +D 
Sbjct: 110 YELRTPRVDTVELAQVFYPTFE-------------KYSLGNLADALALDLADAHTAISDA 156

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
           YAT  L   ++ K   L + + +
Sbjct: 157 YATTQLFLKLKAKMKSLPKEVLE 179


>gi|291087532|ref|ZP_06346731.2| exonuclease family protein [Clostridium sp. M62/1]
 gi|291074686|gb|EFE12050.1| exonuclease family protein [Clostridium sp. M62/1]
          Length = 350

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 29/238 (12%)

Query: 2   TNHFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
             H+++ D E      GR+ ++DR      +   V++D     +        +P      
Sbjct: 4   MGHYIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEF-SRLVRPQVYRTL 62

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
             +   +T +T ++  R+G       +   +FF               D    +     +
Sbjct: 63  HYKISEVTHLTAEQLEREGQKFETAVK---EFFDWCGNDCRFCTWGSMDLTELQRNMVYH 119

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             +     +      +DL  +             +           L    L  GIE   
Sbjct: 120 GME---LPFQKPLYYFDLQKI-------------YSLIQGNTKRESLDTAVLEMGIEEER 163

Query: 174 A-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
             H A  D + T  ++  +       +  +  Y+      + I ++       VS  +
Sbjct: 164 PFHRALDDAWYTGLVMGKMNFYSMMEYISVDYYQTPETEEEEIYLEFPDYSKFVSRTW 221


>gi|239616933|ref|YP_002940255.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505764|gb|ACR79251.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 180

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 51/191 (26%), Gaps = 28/191 (14%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           FV+ D ET G          + AGV V       E +     KP            ITGI
Sbjct: 3   FVVIDTETTGSSPHKGAELIEIAGVVVRDWEIIYEESFNELIKPKRHVPIS--ITMITGI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                    +       R + F       ++   N  FD  +      +         + 
Sbjct: 61  NNLMLEDK-LPIEIVLPRFYDFVRDR---VLVIQNAPFDLSFLDYFGKKIGIGELPNPF- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + + R+++                    L  +    GI   + H A  D  A
Sbjct: 116 -----VDTISLSRSLF---------------RGRHNLDIILARLGIFCEDRHRALGDAVA 155

Query: 184 TLALVWLIREK 194
           T      + + 
Sbjct: 156 TAKAFIKMVKM 166


>gi|261821926|ref|YP_003260032.1| ribonuclease T [Pectobacterium wasabiae WPP163]
 gi|261605939|gb|ACX88425.1| ribonuclease T [Pectobacterium wasabiae WPP163]
          Length = 223

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D+    + + T  F  +P +  + +P A+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAADRCSLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +      +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ITAGIAFDSSQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 183 ALYDTNQTALLFCELVNR 200


>gi|254804313|ref|YP_003082534.1| oligoribonuclease [Neisseria meningitidis alpha14]
 gi|254667855|emb|CBA03898.1| oligoribonuclease [Neisseria meningitidis alpha14]
          Length = 215

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   +R  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 32  KNNLCWLDMEMTGLNPETNRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 91

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 92  THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 151

Query: 115 YDSYRW 120
              +  
Sbjct: 152 NYFHYR 157


>gi|253700819|ref|YP_003022008.1| exonuclease RNase T and DNA polymerase III [Geobacter sp. M21]
 gi|251775669|gb|ACT18250.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M21]
          Length = 312

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 51/186 (27%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62
           +  D ET G D   D+  +   V    D +  +I      +    D  +P PE V  ITG
Sbjct: 55  LCLDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGVPIPEEVKEITG 114

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+             F        +  +  +I +N      +                  
Sbjct: 115 ISDDMVRGQ-----AFDDPFINLLAEKSHLVIAHNAAFDRKFVEARFPAFTKLPW----- 164

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                              +    Q     +  +S  L+ L        +NAH A  D  
Sbjct: 165 -------------------ACTVSQIDWGAERVSSRTLEYLLFKTASLTINAHRALDDAE 205

Query: 183 ATLALV 188
             L L+
Sbjct: 206 GVLGLL 211


>gi|170768829|ref|ZP_02903282.1| ribonuclease T [Escherichia albertii TW07627]
 gi|170122377|gb|EDS91308.1| ribonuclease T [Escherichia albertii TW07627]
          Length = 215

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPERGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G+E     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMEFDSNQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|238749424|ref|ZP_04610929.1| Ribonuclease T [Yersinia rohdei ATCC 43380]
 gi|238712079|gb|EEQ04292.1| Ribonuclease T [Yersinia rohdei ATCC 43380]
          Length = 226

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 59/200 (29%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  R+D+    + + T  F  +P +     PEA+   G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLRMDKDGWLLPDQTLHFHVEPFEGANLQPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E      I             N  II  +N  FD  +      R    
Sbjct: 91  IDPTNPLRGAVSEYNALHAIFTAIRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    L  GI      A
Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 192 HSALYDTMQTATLFCELVNR 211


>gi|227111797|ref|ZP_03825453.1| ribonuclease T [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 223

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D+    + + T  F  +P +  + +P A+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +      +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------ITAGIAFDSSQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 183 ALYDTNQTALLFCELVNR 200


>gi|92115957|ref|YP_575686.1| exonuclease [Nitrobacter hamburgensis X14]
 gi|91798851|gb|ABE61226.1| Exonuclease [Nitrobacter hamburgensis X14]
          Length = 334

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 59/219 (26%), Gaps = 33/219 (15%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+N  F++ D ET   +       Q   V V    E +    +       D   D     
Sbjct: 1   MSNSDFIVLDVET--ANADYASICQIGLVEV-VAGEVVSQEAIL---VNPDDYFDGFNTS 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GIT        +        +H   S   +  I  ++  FD         R   +S+ 
Sbjct: 55  IHGITADHVCGAPLFH-----EVHAALSQRLSGSIIVHHGPFDRVSISRACERCGIESFD 109

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             W +                      +        + + L+ LA   GIE    HDA  
Sbjct: 110 VQWLDNQRVV-----------------RRVWEQFSKSGYALKSLAAFFGIEF-QHHDALQ 151

Query: 180 DVYATLALVWLIREKKPK---LFEYLYDYRNKNQLRKLI 215
           D  AT  +      +       +            + + 
Sbjct: 152 DAIATNEIFRRALNESGTTAADWLSRIKQSLPTTAKTIS 190


>gi|71281267|ref|YP_268980.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H]
 gi|71147007|gb|AAZ27480.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H]
          Length = 256

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 18/201 (8%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDY----LPDPEA 57
              +I D ET G +     R  +   V +    +    T   + KP D        + E 
Sbjct: 14  KRLIILDTETTGINPREGHRIVEIGCVEM-INRQLTGRTYHAYIKPLDQRGQVFQMEQEV 72

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + I G+T +      +    FS+ +H+F        +  +N +FD  +  + F  + ++S
Sbjct: 73  INIHGLTNEFLADKPI----FSQVVHEFIDFIRGAELVIHNSKFDVGFMDHEF--SLFNS 126

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
              S D      D+  +   +     +     + D  A  +++  L           H A
Sbjct: 127 MGRSQDKVPMTEDICTITDTLKVSKDELGSPKTLDYLARFYRVDKLVDR------TYHGA 180

Query: 178 KADVYATLALVWLIREKKPKL 198
             D      +   +  K+   
Sbjct: 181 LIDAQLLAYVYIEMTRKQSSF 201


>gi|188994147|ref|YP_001928399.1| probable exonuclease [Porphyromonas gingivalis ATCC 33277]
 gi|188593827|dbj|BAG32802.1| probable exonuclease [Porphyromonas gingivalis ATCC 33277]
          Length = 260

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 52/173 (30%), Gaps = 29/173 (16%)

Query: 5   FVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           F++ D ET G      +         P       +D ++  IE      C+ + D    P
Sbjct: 69  FLVIDTETTGLPADETQFISGVDAPAPVSVGWQLLDFRFRCIEEVV---CRLSTDEPVSP 125

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           EA  + GIT       G    E   R+    S     ++  +N+ F          R  +
Sbjct: 126 EAAALHGITDASL--HGDDPHEVYARLLGAVSKAK--VLSAHNLAFHRSVLVYDMRRRGF 181

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
           D       +     D    M         G+ +        ++KL  L    G
Sbjct: 182 DP------SPLFSLDDYCTM-------EAGVDFTHLYGSCGTWKLPRLTELFG 221


>gi|72161306|ref|YP_288963.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX]
 gi|71915038|gb|AAZ54940.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 210

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 46/176 (26%), Gaps = 26/176 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + +   D+ET   +           VRV      ++        PA     + + + +
Sbjct: 1   MHDTWTAIDFET--ANRNQGSVCAVGLVRV-TDGRIVDRYTTLVRPPAPVDHFEQDNIAV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GITP+          +    I +F           +N  FD    R             
Sbjct: 58  HGITPEHVADAPA-WPQVHTTILEF---AAGSPFVAHNAVFDMGVIRAACAHAGLPEPSL 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
            +         LD+ R  +                 + +L  +    G +    H 
Sbjct: 114 HYA------CSLDIARRTW-------------PALRNHRLPTVCRTIGYDLRRHHT 150


>gi|34540032|ref|NP_904511.1| exonuclease [Porphyromonas gingivalis W83]
 gi|34396343|gb|AAQ65410.1| exonuclease [Porphyromonas gingivalis W83]
          Length = 260

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 52/173 (30%), Gaps = 29/173 (16%)

Query: 5   FVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           F++ D ET G      +         P       +D ++  IE      C+ + D    P
Sbjct: 69  FLVIDTETTGLPADETQFISGVDAPAPVSVGWQLLDFRFRCIEEVV---CRLSTDEPVSP 125

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           EA  + GIT       G    E   R+    S     ++  +N+ F          R  +
Sbjct: 126 EAAALHGITDASL--HGDDPHEVYARLLGAVSKAK--VLSAHNLAFHRSVLVYDMRRRGF 181

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
           D       +     D    M         G+ +        ++KL  L    G
Sbjct: 182 DP------SPLFSLDDYCTM-------EAGVDFTHLYGSCGTWKLPRLTELFG 221


>gi|269213888|ref|ZP_05983052.2| oligoribonuclease [Neisseria cinerea ATCC 14685]
 gi|269145276|gb|EEZ71694.1| oligoribonuclease [Neisseria cinerea ATCC 14685]
          Length = 188

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 10/130 (7%)

Query: 1   MT---NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55
           M    N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D 
Sbjct: 1   MMQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDE 60

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIF 110
                 G T   Q+       EAE  +++  F S         +  N+I  D  +     
Sbjct: 61  WNTATHGRTGLTQRVRESSYTEAEVEQKLLDFMSEWIPERATPMCGNSIHQDRRFMVKYM 120

Query: 111 YRNFYDSYRW 120
            +     +  
Sbjct: 121 PKLENYFHYR 130


>gi|59800509|ref|YP_207221.1| oligoribonuclease [Neisseria gonorrhoeae FA 1090]
 gi|194097641|ref|YP_002000679.1| oligoribonuclease [Neisseria gonorrhoeae NCCP11945]
 gi|239998172|ref|ZP_04718096.1| oligoribonuclease [Neisseria gonorrhoeae 35/02]
 gi|240013354|ref|ZP_04720267.1| oligoribonuclease [Neisseria gonorrhoeae DGI18]
 gi|240015799|ref|ZP_04722339.1| oligoribonuclease [Neisseria gonorrhoeae FA6140]
 gi|240079936|ref|ZP_04724479.1| oligoribonuclease [Neisseria gonorrhoeae FA19]
 gi|240112143|ref|ZP_04726633.1| oligoribonuclease [Neisseria gonorrhoeae MS11]
 gi|240114889|ref|ZP_04728951.1| oligoribonuclease [Neisseria gonorrhoeae PID18]
 gi|240117093|ref|ZP_04731155.1| oligoribonuclease [Neisseria gonorrhoeae PID1]
 gi|240120427|ref|ZP_04733389.1| oligoribonuclease [Neisseria gonorrhoeae PID24-1]
 gi|240122729|ref|ZP_04735685.1| oligoribonuclease [Neisseria gonorrhoeae PID332]
 gi|240124920|ref|ZP_04737806.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|240127431|ref|ZP_04740092.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|254492949|ref|ZP_05106120.1| oligoribonuclease [Neisseria gonorrhoeae 1291]
 gi|260441295|ref|ZP_05795111.1| oligoribonuclease [Neisseria gonorrhoeae DGI2]
 gi|268594024|ref|ZP_06128191.1| oligoribonuclease [Neisseria gonorrhoeae 35/02]
 gi|268596076|ref|ZP_06130243.1| oligoribonuclease [Neisseria gonorrhoeae FA19]
 gi|268598201|ref|ZP_06132368.1| oligoribonuclease [Neisseria gonorrhoeae MS11]
 gi|268600546|ref|ZP_06134713.1| oligoribonuclease [Neisseria gonorrhoeae PID18]
 gi|268602779|ref|ZP_06136946.1| oligoribonuclease [Neisseria gonorrhoeae PID1]
 gi|268681328|ref|ZP_06148190.1| oligoribonuclease [Neisseria gonorrhoeae PID332]
 gi|268683499|ref|ZP_06150361.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|268685805|ref|ZP_06152667.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|291044651|ref|ZP_06570360.1| oligoribonuclease [Neisseria gonorrhoeae DGI2]
 gi|293397760|ref|ZP_06641966.1| oligoribonuclease [Neisseria gonorrhoeae F62]
 gi|81311266|sp|Q5FAH8|ORN_NEIG1 RecName: Full=Oligoribonuclease
 gi|59717404|gb|AAW88809.1| putative oligo ribonuclease [Neisseria gonorrhoeae FA 1090]
 gi|193932931|gb|ACF28755.1| oligoribonuclease [Neisseria gonorrhoeae NCCP11945]
 gi|226511989|gb|EEH61334.1| oligoribonuclease [Neisseria gonorrhoeae 1291]
 gi|268547413|gb|EEZ42831.1| oligoribonuclease [Neisseria gonorrhoeae 35/02]
 gi|268549864|gb|EEZ44883.1| oligoribonuclease [Neisseria gonorrhoeae FA19]
 gi|268582332|gb|EEZ47008.1| oligoribonuclease [Neisseria gonorrhoeae MS11]
 gi|268584677|gb|EEZ49353.1| oligoribonuclease [Neisseria gonorrhoeae PID18]
 gi|268586910|gb|EEZ51586.1| oligoribonuclease [Neisseria gonorrhoeae PID1]
 gi|268621612|gb|EEZ54012.1| oligoribonuclease [Neisseria gonorrhoeae PID332]
 gi|268623783|gb|EEZ56183.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|268626089|gb|EEZ58489.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|291011545|gb|EFE03541.1| oligoribonuclease [Neisseria gonorrhoeae DGI2]
 gi|291611706|gb|EFF40775.1| oligoribonuclease [Neisseria gonorrhoeae F62]
 gi|317163462|gb|ADV07003.1| oligoribonuclease [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 187

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +DD L   D     
Sbjct: 4   KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDDLLDNMDEWNTA 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 64  THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWIPGRATPMCGNSIHQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|290580136|ref|YP_003484528.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254997035|dbj|BAH87636.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 300

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 59/190 (31%), Gaps = 27/190 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D ET G D   +   +   V++D    ++E           D +   +   +TGI+
Sbjct: 131 YVVIDIETDGLDENENSIIEIGAVKIDPS--QLEEFNYL---VKYDKILPKQISKLTGIS 185

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   RDG       +    F    +   +    I FD  +                   
Sbjct: 186 QELLDRDGKDLQVVLQEFLNFIGNHD---LVGYGINFDIKFINKKLKELNQPLL------ 236

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N  +DL+   +    F  +             +KLQ +  A  IE    H A  D    
Sbjct: 237 KNRVYDLMQYAKKEKLFLDN-------------YKLQTVLKAYEIEDEVPHRALHDSKLI 283

Query: 185 LALVWLIREK 194
             L   + + 
Sbjct: 284 YDLSTKMNKF 293


>gi|191637943|ref|YP_001987109.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           casei BL23]
 gi|190712245|emb|CAQ66251.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           casei BL23]
 gi|327382013|gb|AEA53489.1| hypothetical protein LC2W_1155 [Lactobacillus casei LC2W]
 gi|327385171|gb|AEA56645.1| hypothetical protein LCBD_1147 [Lactobacillus casei BD-II]
          Length = 180

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 28/205 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D+ET   +         A V V +  + ++S              D + + I GIT
Sbjct: 3   FIAMDFET--ANRKRASACSLALVVVQQN-KVVDSFYTL---INPQMQFDAQNIHIHGIT 56

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+               I  F       I+  +N  FD    R    R            
Sbjct: 57  PEMVQDQP-TFDRVWPHIQMF--YTPGRIVTAHNAPFDVSVMRLTLDRYGI--------- 104

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R+ ++D ++    F P             + +L  ++ A  I   + H+A AD YA 
Sbjct: 105 AAPRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALHIPLEHHHNALADSYAC 154

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
             ++    E   +         +K 
Sbjct: 155 ARILIAENEHFGEARIKSMMKLSKA 179


>gi|308535281|ref|YP_002138830.2| 3'-to-5' exonuclease [Geobacter bemidjiensis Bem]
 gi|308052626|gb|ACH39034.2| 3'-to-5' exonuclease, putative [Geobacter bemidjiensis Bem]
          Length = 312

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 47/186 (25%), Gaps = 32/186 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITG 62
           +  D ET G D   D+  +   V    D +  +I      +       +    E   ITG
Sbjct: 55  LCLDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGFPIPEEVKEITG 114

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+             F        +  +  +I +N      +                  
Sbjct: 115 ISDDMVRGQ-----AFDDAFINLLAEKSHMVIAHNAAFDRKFVEARFPAFTKLPW----- 164

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                              +    Q     +  +S  L+ L        +NAH A  D  
Sbjct: 165 -------------------ACTVSQIDWGAERVSSRTLEYLLFKTASLTINAHRALDDAE 205

Query: 183 ATLALV 188
             L L+
Sbjct: 206 GVLGLL 211


>gi|161869352|ref|YP_001598519.1| oligoribonuclease [Neisseria meningitidis 053442]
 gi|161594905|gb|ABX72565.1| oligoribonuclease [Neisseria meningitidis 053442]
 gi|325135642|gb|EGC58259.1| oligoribonuclease [Neisseria meningitidis M0579]
          Length = 187

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 4   KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S      T  +  N+I  D  +      +  
Sbjct: 64  THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPERTTPMCGNSIHQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|71414299|ref|XP_809256.1| exonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70873611|gb|EAN87405.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 316

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 5/90 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE----VFFCKPADDYLPDPEAVFIT 61
           +  D ET G     D       V +      ++        FF           +A  + 
Sbjct: 97  ICVDLETTGFSAQRDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAEAVH 156

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT 91
           G++ +      ++E +       F    + 
Sbjct: 157 GLSFEMLRDAPLLE-DVISDFAAFLIQLDG 185


>gi|311697102|gb|ADP99974.1| YacC protein [marine bacterium HP15]
          Length = 286

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 56/187 (29%), Gaps = 26/187 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D    +  + A    D Q   +  T     K       DPEA  + G+T 
Sbjct: 109 LFLDTETTGLD-DQAQIIELAI--SDAQGTILLET-----KLRPSVSIDPEAEDVHGLTI 160

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          E S ++ +        ++ +N       + +                  
Sbjct: 161 EFLANAP-TWPEVSDQVRKIL--CGRALVIFNADFDTRMFRQTAAAY------------- 204

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
               + +  ++   A       +   +    S  L D     G      AH A AD  AT
Sbjct: 205 GEPVEWVSELKTHCAMYLAADAFGPTNRH-GSISLADAVDFAGVTWRGAAHGAVADTLAT 263

Query: 185 LALVWLI 191
           + LV  I
Sbjct: 264 VDLVQAI 270


>gi|168463155|ref|ZP_02697086.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195634173|gb|EDX52525.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 215

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  I+  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      LA     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRN 207
           A  D   T  L   I  +  +L  +      
Sbjct: 183 ALYDTERTAVLFCEIVNRWKRLGGWPLPLST 213


>gi|62180023|ref|YP_216440.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161614147|ref|YP_001588112.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168819183|ref|ZP_02831183.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|198245565|ref|YP_002215700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|81309702|sp|Q57PK2|RNT_SALCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|62127656|gb|AAX65359.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161363511|gb|ABX67279.1| hypothetical protein SPAB_01887 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197940081|gb|ACH77414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|205343777|gb|EDZ30541.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320086089|emb|CBY95863.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322714491|gb|EFZ06062.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|326623447|gb|EGE29792.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 215

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 61/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  I+  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      LA     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTERTAVLFCEIVNR 200


>gi|296272299|ref|YP_003654930.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
           7299]
 gi|296098846|gb|ADG94796.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
           7299]
          Length = 209

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 20/191 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N +V  D ET G +   D       V +      +  T   + KP+D+     +++ I 
Sbjct: 28  KNEYVCLDCETTGLNPKKDEILSIGAVIIKENKVLMSKTFNIYVKPSDN--ISTQSILIH 85

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I P         E      I++      + +I    I+FD         +        S
Sbjct: 86  RIRPIDLENAIDPE----EAIYELLKFIGSRVIVGYYIKFDIAIISRYTKKYIGIKLPNS 141

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               +S +      R+ Y F                 K   +     I  +  HDA  D 
Sbjct: 142 SIEVSSMYYRTKKRRSDYEF--------------VDLKFDTIMKELDIPLLGKHDALNDA 187

Query: 182 YATLALVWLIR 192
             T  +   ++
Sbjct: 188 IMTSMIFLKLK 198


>gi|329938978|ref|ZP_08288352.1| exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301863|gb|EGG45756.1| exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 242

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 46/169 (27%), Gaps = 17/169 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  +          V             EA  + G+T + 
Sbjct: 12  FDTETTGVDVEGDRIVSAAVVVQEAAG---ARPRVRRWLVDPGVPVPAEATAVHGLTEEH 68

Query: 68  ALRDGVVEAEFSRRI---HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             R+G   A   R +    Q+ +     ++  N   FD         R+   S       
Sbjct: 69  LRRNGRWPAPVMREMADELQYLAAAGRPLVVMNAP-FDLTLLDRELRRHRASSLDR---- 123

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                  L     +    P  +             L DL    G+    
Sbjct: 124 ------WLAASAPLRVLDPRVLDRHLDRYRKGRRTLTDLCAHYGVTLEG 166


>gi|13242597|ref|NP_077611.1| EsV-1-126 [Ectocarpus siliculosus virus 1]
 gi|13177400|gb|AAK14544.1|AF204951_126 EsV-1-126 [Ectocarpus siliculosus virus 1]
          Length = 206

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 65/217 (29%), Gaps = 27/217 (12%)

Query: 1   MTNHFVIYDYETFGRDVAL-----------DRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           M    + +D ET G                 R    A V  D +    +   V     AD
Sbjct: 1   MPE--LFFDVETTGLPPRKANPETFEQYDSCRVVSIAWVLRDEKTVYSQRYSVTDPGIAD 58

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           + +    A F+ GI+ +   R G                 +   I  +N+ FD       
Sbjct: 59  ENI---GAEFVHGISREVMDRYGNATKVVLSDFMADVDRSDK--IVAHNLDFDRSVVSAE 113

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NG 168
            +R           + ++R  +          + + ++ P+        KL++L     G
Sbjct: 114 LFRMG--------SSDDARRLMSFKSLCTMKSTTNLVRIPNSYGSYKWPKLEELHEFLFG 165

Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205
               NAH A  DV A +   + + EK           
Sbjct: 166 HVFENAHHAMCDVDAMVKCYFTLLEKHTSSKNKNEKT 202


>gi|296314314|ref|ZP_06864255.1| oligoribonuclease [Neisseria polysaccharea ATCC 43768]
 gi|296838975|gb|EFH22913.1| oligoribonuclease [Neisseria polysaccharea ATCC 43768]
          Length = 187

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 4   KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S      T  +  N+I  D  +      +  
Sbjct: 64  THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPERTTPMCGNSIHQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|258507958|ref|YP_003170709.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
 gi|257147885|emb|CAR86858.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
 gi|259649285|dbj|BAI41447.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
          Length = 180

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 62/205 (30%), Gaps = 28/205 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D+ET   +         A V V +    ++S              DP+ + I GIT
Sbjct: 3   FIAMDFET--ANRKRASACSLALVVVQQN-RVVDSFYTL---INPQMQFDPQNIRIHGIT 56

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P                I  F       I+  +N  FD    R    R            
Sbjct: 57  PDMVQDQP-TFDRVWPHIQMF--YTPGRIVTAHNAPFDVSVLRLTLDRYGI--------- 104

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R+ ++D ++    F P             + +L  ++ A  I   + H+A AD YA 
Sbjct: 105 AAPRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALKIPLEHHHNALADSYAC 154

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
             ++    E   +          K 
Sbjct: 155 ARILIAENEHFGEARTKAMMKLAKA 179


>gi|157165763|ref|YP_001466765.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826]
 gi|112800127|gb|EAT97471.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826]
          Length = 267

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 53/187 (28%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G      +  +   +++ +   +I   E F        +       +TGI 
Sbjct: 76  FCVVDIETTGG-TTNGQIIEIGAIKM-KNGTEIGRFESFVAA----SVVPENITELTGIR 129

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +            + +F     T +   +N+ FD  +  +                
Sbjct: 130 ASDLVGAPN----LLNVLERFKIFLGTSVFIAHNVNFDYGFISHSLNEIGLGILLN---- 181

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +   +D+ R   A                 + L  L    GI + + H A  D  A 
Sbjct: 182 --RKLCTIDLSRRTIASQ--------------KYGLGSLKELLGINNTH-HRALNDAIAA 224

Query: 185 LALVWLI 191
             +  + 
Sbjct: 225 AEIFKVC 231


>gi|54303407|ref|YP_133400.1| putative DNA polymerase III [Photobacterium profundum SS9]
 gi|46916837|emb|CAG23600.1| putative DNA polymerase III [Photobacterium profundum SS9]
          Length = 236

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 71/204 (34%), Gaps = 19/204 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET G +   D+      V +     ++ S+E  + +         E+  I  I
Sbjct: 50  NFVAIDFETTGLNCQQDKILSIGVVNLTTDMIELASSEEIYIR--HGEFIKAESAQINEI 107

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TP++  +      +    I          I+  +    +  +  +          + ++ 
Sbjct: 108 TPKQLHKG----VDIDTAIDWLLERIQGKIVLAHCANIEKQFIES--------YLKDTYQ 155

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +D ++     S  G     + +  TS++L DL   + +    +H A +D  A
Sbjct: 156 LNTFPCYFIDTLQLEKHHSYAG-----KSNQHTSYQLDDLRQYHNLPAYYSHSAASDAVA 210

Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207
              L  +  +K     ++  +  +
Sbjct: 211 CAELFLVQVKKLNLTSDFSLNELS 234


>gi|326791308|ref|YP_004309129.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
 gi|326542072|gb|ADZ83931.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
           DSM 5427]
          Length = 248

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 60/202 (29%), Gaps = 31/202 (15%)

Query: 4   HFVIYDYETF-GRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           +++++D E         D             Q   V++D  +  I++      KP     
Sbjct: 2   NYIVFDLEFNQDFSARKDVVNKENPYTFEIIQIGAVKLDENFHTIDTFN-RLIKPTIYEE 60

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
            +P   ++TGIT ++  ++    +E  +   +F          +        +   ++++
Sbjct: 61  MNPFVSYLTGITIEQLAQE-ESFSEVYKAYIEFIGSRKAICCIWGTSDMKILFKNILYHK 119

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                +   + N                                  +LQD      I   
Sbjct: 120 LDPAPFPRMFINIQPY-----------------TSIYLGLPSKKLLRLQDAVNMLQIPTS 162

Query: 173 NA-HDAKADVYATLALVWLIRE 193
            A H A +D Y T  +   + +
Sbjct: 163 TAFHLALSDAYYTAEIFKKVYQ 184


>gi|268592614|ref|ZP_06126835.1| ribonuclease T [Providencia rettgeri DSM 1131]
 gi|291311752|gb|EFE52205.1| ribonuclease T [Providencia rettgeri DSM 1131]
          Length = 214

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 64/200 (32%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D+     ++ T  F  +P +    +P A+  TG
Sbjct: 20  VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSMDETLHFHVEPFEGANLEPSALAFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  II  +N  FD  +  N   R    
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKVIRKGMKNTDCNRAIIVAHNANFDHSFVMNAAERAGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            I             L    ++ GI      A
Sbjct: 140 ------RNPFHPFATFDTAALSGLVFGQTI-------------LAKACVSAGIPFDGKQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  K
Sbjct: 181 HGALYDTNRTALLFCEIVNK 200


>gi|149910647|ref|ZP_01899284.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
 gi|149806274|gb|EDM66250.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
          Length = 239

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 63/201 (31%), Gaps = 31/201 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE------AV 58
           FV  D+ET G D   +       V  +         +  FC+ A  +  +PE      ++
Sbjct: 48  FVALDFETTGLDSEQNSIISIGLVPFN--------LQRIFCRQAQHWYIEPEDKLKENSI 99

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GIT            +  R +          ++  +  R +         R+F+D++
Sbjct: 100 IIHGITHTDLKGAP----DLLRILEPVLDALAGKVVVVHYRRIE---------RDFFDNH 146

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQ----WPSRDDGATSFKLQDLALANGIEHVNA 174
             S+ N    + ++D M+                        S +L +      +     
Sbjct: 147 LRSFINEGIVFPVIDTMQIEADVQESQNNSFFSLFKPKKRQESIRLANSRARYNLPAYPP 206

Query: 175 HDAKADVYATLALVWLIREKK 195
           HDA  D  AT  L+       
Sbjct: 207 HDALTDAIATAELLQAQIHYH 227


>gi|255068356|ref|ZP_05320211.1| oligoribonuclease [Neisseria sicca ATCC 29256]
 gi|255047405|gb|EET42869.1| oligoribonuclease [Neisseria sicca ATCC 29256]
          Length = 185

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           +    D E  G D   +R  + A +  D     +  +EV+    +D+ L   D       
Sbjct: 7   NLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDEWNTATH 66

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYD 116
           G T   Q+     + EAE  +++  F +         +  N+I  D  +      R    
Sbjct: 67  GRTGLTQRVRESQLTEAEVEQKLLDFIAQWIPEKATPMCGNSIHQDRRFMVKYMPRLEAY 126

Query: 117 SYRW 120
            +  
Sbjct: 127 FHYR 130


>gi|319639353|ref|ZP_07994104.1| oligoribonuclease [Neisseria mucosa C102]
 gi|317399537|gb|EFV80207.1| oligoribonuclease [Neisseria mucosa C102]
          Length = 185

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFI 60
           N+    D E  G +   DR  + A +  D     +  ++V+    +D+ L   +      
Sbjct: 6   NNLCWLDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDSMDEWNTAT 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115
            G T   Q+     + EAE  + +  F S         +  N+I  D  +      R   
Sbjct: 66  HGRTGLTQRVRESTLTEAEVEQNLLDFMSAWIPEKSTPMCGNSIHQDRRFMVKYMPRLEA 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|188581967|ref|YP_001925412.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
 gi|179345465|gb|ACB80877.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 187

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 59/195 (30%), Gaps = 25/195 (12%)

Query: 8   YDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +D ET G         D A  R  Q            + S      +P    +  PEA  
Sbjct: 5   FDVETSGLIIRDRPLDDPAQPRMVQLGFTVHTPDRRVVHSYSALI-RPDGWEI-TPEAQR 62

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + G + +   R GV        +          I   +N   D   ++            
Sbjct: 63  VHGFSTEDCGRWGVDSKVALLDLVSALKT--ARIAVAHNFANDAAIAQRE----LNILKA 116

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                  +R   +  MR   A   DG +WP+        KL       G EH  AHDA  
Sbjct: 117 ADEGFMRARLRRVCTMRTGAALVQDG-KWPTLG---RLHKLLA-----GHEHEGAHDALG 167

Query: 180 DVYATLALVWLIREK 194
           D  AT    W + ++
Sbjct: 168 DAQATARCFWGLVDR 182


>gi|304388401|ref|ZP_07370510.1| oligoribonuclease [Neisseria meningitidis ATCC 13091]
 gi|304337613|gb|EFM03773.1| oligoribonuclease [Neisseria meningitidis ATCC 13091]
          Length = 187

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 4   KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 64  THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPERATPMCGNSIHQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|90407122|ref|ZP_01215310.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
 gi|90311698|gb|EAS39795.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
          Length = 238

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 58/197 (29%), Gaps = 24/197 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE------AV 58
           FV  D+ET G D   +       V  D         +  +C+ A  +  +PE      ++
Sbjct: 48  FVALDFETTGLDSKQNSIISIGLVPFD--------LQRIYCRKAKKWYINPEDNLKENSI 99

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GIT            +    +          ++  +  R +  +          +  
Sbjct: 100 IIHGITHSDLQGAP----DLLSILEPLLKELAGKVVVVHYRRIERDFFDLDLRAQLKEGI 155

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                      D + +   +      G     +   + S +L +  +   +   + HDA 
Sbjct: 156 I------FPVIDTMQIEADVQNKYSKGFINWLKGHQSESIRLANSRVRYNLPAYSPHDAL 209

Query: 179 ADVYATLALVWLIREKK 195
            D  AT  L+    +  
Sbjct: 210 TDAIATAELLQAQIKYH 226


>gi|296117576|ref|ZP_06836160.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969307|gb|EFG82548.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 467

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 59/184 (32%), Gaps = 24/184 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGI 63
           FV  D ET   +       Q   VR     E+ ES +V+ C+P       D   + I GI
Sbjct: 107 FVAVDVET--ANGNWGSICQIGAVRF-VAGEETES-KVWLCQPPAGIDHFDDINISIHGI 162

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           AE +  +  F       ++  +N +FD    R+ F R           
Sbjct: 163 TADDVKDAP-TFAEAAGELLTFMRD---DVLVAHNAQFDATALRSAFLRTQTP------- 211

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +  M    + +       S+     + KL  +A A        HDA  D  A
Sbjct: 212 --------VPEMALACSLALARYASKSKVLSVANHKLPTVAKAVSFGDFQHHDALDDARA 263

Query: 184 TLAL 187
              +
Sbjct: 264 AGHI 267


>gi|262275580|ref|ZP_06053389.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262219388|gb|EEY70704.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 239

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 20/189 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D+ET G D   D+      V + +   +I  +           L   E+  I  + P
Sbjct: 54  LVLDFETSGLDPEQDKVLSMGWVEIRQS--QIRLSSARHILVNQPVLNGYESARIHHLRP 111

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +     GV E     ++          I+ + ++    + +R +       +    W   
Sbjct: 112 ETLRNCGVSEHHAFSQLFDVMK--GKVIVAHGSVIEKRFLARYLTLHYGQINLPLVW--- 166

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D L + +           W          +L  +  A+G+    AH+A  D  AT 
Sbjct: 167 ---LDTLKIEQYREQLRQVCRDW----------RLSSVRAAHGLPDYQAHNALNDAIATA 213

Query: 186 ALVWLIREK 194
            L      +
Sbjct: 214 ELYLAQVHR 222


>gi|77407162|ref|ZP_00784150.1| exonuclease, putative [Streptococcus agalactiae H36B]
 gi|77174231|gb|EAO77112.1| exonuclease, putative [Streptococcus agalactiae H36B]
          Length = 124

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N F+ +D ET G +   DR  +   V      + ++S E              +   I 
Sbjct: 50  KNRFIAFDIETTGLNSQQDRIVEVGAVLF-ENGKVVDSYESL---VNAKVNISADVTRIN 105

Query: 62  GITPQKALRDG 72
            IT +      
Sbjct: 106 NITNRMIKNAP 116


>gi|325204819|gb|ADZ00273.1| oligoribonuclease [Neisseria meningitidis M01-240355]
          Length = 187

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 4   KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDELLDNMDEWNTA 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 64  THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|262182582|ref|ZP_06042003.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 223

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 10/103 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET        R    A VR+D    +++  E+             EA  I GIT +K
Sbjct: 11  FDLETTSVKPKEARIVTSALVRID--GREVDKREMLA---DPGVEIPEEAAKIHGITTEK 65

Query: 68  ALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYS 106
           A  +G    E  +     I+Q +      +I YN         
Sbjct: 66  ARAEGRPHEEVLKETVDSIYQAWDE-GLTLIVYNAAYDLSVLR 107


>gi|312864644|ref|ZP_07724875.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei
           F0415]
 gi|311099771|gb|EFQ57984.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei
           F0415]
          Length = 823

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 29/191 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D E         +  Q   V V  Q + +++ +                + +TGI
Sbjct: 9   KYAVVDLEATSAST-TAQIIQVGIVIV-EQGQIVQTYQT---DVNPHEALTQHIIDLTGI 63

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T Q+  +     ++ +  I Q       CI   +N++FD        +   Y+       
Sbjct: 64  TDQQLAQAP-DFSQVAGDIFQLIQD---CIFVAHNVKFDANLLAEQLFLEGYE------- 112

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R   +D +     F P   +          ++L DLA    ++  +AH A AD YA
Sbjct: 113 ---LRTPRVDTVELSQVFFPTLER----------YRLSDLAKYLDLDLTHAHTAIADAYA 159

Query: 184 TLALVWLIREK 194
           T  L+  I+EK
Sbjct: 160 TAQLLISIQEK 170


>gi|331683160|ref|ZP_08383761.1| ribonuclease T [Escherichia coli H299]
 gi|331079375|gb|EGI50572.1| ribonuclease T [Escherichia coli H299]
          Length = 215

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHNFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 240

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 26/199 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G D     R  +   + +            F+  P  D     EA  + GI+
Sbjct: 18  IILDTETTGLDPRQGHRIVEIGAIEM-VNKVLTGRNFHFYINPERDMPF--EAYRMHGIS 74

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +     +    +F +     I   +N  FD  +  +    +           
Sbjct: 75  GEFLKDKPLFHT-IADDFLEFIADSKLII---HNAPFDIKFLNHEL--SLLKRAEIKLLE 128

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVY 182
             +  D L + R+++                + + L  L     +++     H A  D  
Sbjct: 129 LANTIDTLVMARSMFPG--------------SKYNLDALCKRFKVDNSSRQLHGALKDAA 174

Query: 183 ATLALVWLIREKKPKLFEY 201
               +   +   +   F+ 
Sbjct: 175 LLAEVYVELMGGRQSAFKM 193


>gi|229113222|ref|ZP_04242717.1| exonuclease [Bacillus cereus Rock1-15]
 gi|228670248|gb|EEL25596.1| exonuclease [Bacillus cereus Rock1-15]
          Length = 288

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 11/112 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + FVI D ET G     D+  + + +  D   + +              +   EA  I 
Sbjct: 128 KDQFVILDTETTGL-TLRDQIIEISVI--DLAGKIL-----LNSLVKPTIIIPAEATSIH 179

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           GIT +             + + +        I+ YN               N
Sbjct: 180 GITNEMIHGA-QSWTTIYQELLEV--TVGKTILIYNAEFDLGMIENTCIANN 228


>gi|261364618|ref|ZP_05977501.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
 gi|288567207|gb|EFC88767.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
          Length = 239

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 58/194 (29%), Gaps = 27/194 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +FAG+ +    +        +  P  D     EA  + G+T
Sbjct: 5   IILDTETTGLYAENGDRLVEFAGLEM-VNRQMTGRFLHLYVHPQRDM--PEEAARVHGLT 61

Query: 65  PQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                       A+  + I +F       I   +N +FD  +    F R    S      
Sbjct: 62  IDVLEEKNAPPFAKVGQEISEFIRGAELII---HNAKFDVGFLNMEFRRMGLPSVEE--- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
            G    D L + R ++                    L  L     I+      H A  D 
Sbjct: 116 LGCEITDTLAMAREMFPGQKA--------------SLDALCNRLSIDRSKRVLHGALIDC 161

Query: 182 YATLALVWLIREKK 195
                +   +  ++
Sbjct: 162 ELLGEVYLAMTRQQ 175


>gi|119383203|ref|YP_914259.1| exonuclease, RNase T and DNA polymerase III [Paracoccus
           denitrificans PD1222]
 gi|119372970|gb|ABL68563.1| Exonuclease, RNase T and DNA polymerase III [Paracoccus
           denitrificans PD1222]
          Length = 303

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 60/213 (28%), Gaps = 32/213 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
                I D ET G D   DR  + A  R  VD +   IE       +        P    
Sbjct: 52  MRIVAIIDTETTGLDPTTDRLVEIAIERLSVDARGRIIEMEHPRSWREDPGRSMPPRLTL 111

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TG+T          +     ++ +        +I  +N  FD  +              
Sbjct: 112 LTGLTDADLAGCAFDDESIVAQLGE------ADVIIAHNAAFDRPF-------------- 151

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D+        A+     Q      G     L  L    G      H A+ 
Sbjct: 152 ---------VDVRFPALQHQAWGCSLTQLDWLTLGFDGRALGHLLFQAGWYF-KGHRAEQ 201

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
           DV+A   L+  +      +  +L +  ++   R
Sbjct: 202 DVHALATLLGSVAGDGRTIMSHLLERCDRPNFR 234


>gi|315290558|gb|EFU49932.1| ribonuclease T [Escherichia coli MS 153-1]
          Length = 215

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPSDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|115460648|ref|NP_001053924.1| Os04g0623400 [Oryza sativa Japonica Group]
 gi|113565495|dbj|BAF15838.1| Os04g0623400 [Oryza sativa Japonica Group]
          Length = 282

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 57/212 (26%), Gaps = 27/212 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +++D ET G      R  +FA    D           F      +         +  I
Sbjct: 61  TILVFDLETTGYFHKDHRIVEFA--LCDLSG---GKNSTFETLVNPERTVPDYVEHLIKI 115

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDS 117
                 R G+   ++    +  F             + +N  +FD  +    F R     
Sbjct: 116 GTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPL 175

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHD 176
                      +D L + +          +    +       L+ L    GI  H +AH 
Sbjct: 176 PA-----DWLFFDTLLLAK----------KMVKAEGKKRRTSLEALREHYGIVSHDDAHR 220

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNK 208
           A  DV     +   +        E L +   K
Sbjct: 221 AMRDVMILSQVFQKMTFDLKLTNEELINEAMK 252


>gi|172040411|ref|YP_001800125.1| DNA polymerase III subunit epsilon [Corynebacterium urealyticum DSM
           7109]
 gi|171851715|emb|CAQ04691.1| DNA polymerase III, epsilon subunit [Corynebacterium urealyticum
           DSM 7109]
          Length = 237

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 8/104 (7%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G +    R    A VR+     ++E  E+             +A  + GIT + 
Sbjct: 28  FDLETTGTNPLSARIVTSAMVRIR--GSQVEDVELLA---DPGVEIPEQASAVHGITTEY 82

Query: 68  ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
           A   G    E      +           ++ +N           
Sbjct: 83  AREHGKPHDEVLAETIRAIRQGWEEGATLVVFNAPYDLTVLRSQ 126


>gi|313669085|ref|YP_004049369.1| oligoribonuclease [Neisseria lactamica ST-640]
 gi|313006547|emb|CBN88011.1| putative oligoribonuclease [Neisseria lactamica 020-06]
          Length = 187

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 4   KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 64  THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWIPERATPMCGNSIHQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|326568596|gb|EGE18667.1| ribonuclease T [Moraxella catarrhalis BC7]
          Length = 232

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 66/217 (30%), Gaps = 31/217 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A   + +D               +P D    +P A+  TG
Sbjct: 22  VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81

Query: 63  ITPQKALRDGVVEAE--FSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P    R  + E E    RRI +             CI+  +N  FD  +      R  
Sbjct: 82  INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN- 173
                    +    + +LD +          +             L    +  GIE  N 
Sbjct: 142 -----SKNHSPFHTFSVLDTVSFAALTYGHTV-------------LAKTCMIAGIEFDNQ 183

Query: 174 -AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
            AH A  D   T  L   I  +   L     +    +
Sbjct: 184 HAHSALYDAQKTAELFCHIVNQNTLLSTNHANLTQND 220


>gi|220918921|ref|YP_002494225.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956775|gb|ACL67159.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 200

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 12/186 (6%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G D   D       + V     ++        +P       P +V    +    
Sbjct: 16  LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEHGKAVSPRSVQAHQLVAGD 75

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                   AE    + +        ++ ++      +  R                 G  
Sbjct: 76  TRGAP-PLAEVLPELERRLR--GAVLLVHHAPIELGFLKRAFRAAGLRWP-------GPP 125

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D + ++  +   + +   +P          L       G+    AHDA  D  AT  L
Sbjct: 126 VVDTVKLL--LRLDARERRSFPELPADPPVLNLSAARRRLGLPDYQAHDALTDAVATAEL 183

Query: 188 VWLIRE 193
             ++RE
Sbjct: 184 FLVLRE 189


>gi|296113547|ref|YP_003627485.1| ribonuclease T [Moraxella catarrhalis RH4]
 gi|295921241|gb|ADG61592.1| ribonuclease T [Moraxella catarrhalis RH4]
 gi|326559550|gb|EGE09964.1| ribonuclease T [Moraxella catarrhalis 7169]
 gi|326564652|gb|EGE14870.1| ribonuclease T [Moraxella catarrhalis 46P47B1]
 gi|326567767|gb|EGE17873.1| ribonuclease T [Moraxella catarrhalis BC1]
          Length = 232

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 66/217 (30%), Gaps = 31/217 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A   + +D               +P D    +P A+  TG
Sbjct: 22  VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81

Query: 63  ITPQKALRDGVVEAE--FSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P    R  + E E    RRI +             CI+  +N  FD  +      R  
Sbjct: 82  INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN- 173
                    +    + +LD +          +             L    +  G+E  N 
Sbjct: 142 -----SKNHSPFHTFSVLDTVSFAALTYGHTV-------------LAKTCMIAGLEFDNQ 183

Query: 174 -AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
            AH A  D   T  L   I  +   L     +    +
Sbjct: 184 HAHSALYDAQKTAELFCHIVNQNTLLSTNHANLTQND 220


>gi|164688494|ref|ZP_02212522.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM
           16795]
 gi|164602907|gb|EDQ96372.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM
           16795]
          Length = 252

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 35/229 (15%)

Query: 4   HFVIYDYETFGRDVALDR--------------PAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           +++I+D E    +   DR                Q   +++D +   +++    + K   
Sbjct: 2   NYIIFDLE---FNQGFDRLNNKTVSNAKCPFEIIQIGAIKLDSELNILDTFSS-YIKSEI 57

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
                P    +TGIT            E      +F  + N+    +      + +   +
Sbjct: 58  YKDIHPFVKKMTGITNSNLKNAP-SFKEVYEDFLKFIGIKNSIFGTWGTNDLKELHRNIL 116

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
           FY    ++    + N                      ++ +   G        +++    
Sbjct: 117 FYNLSLENVPTMYIN----------------IQQHASKFFNNPVGKCIGLQNAISILQLE 160

Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
           +    H+A  D Y T  +   I  K  K   Y Y+   K + ++ + I 
Sbjct: 161 QDKQYHNALNDAYYTALVFQKINNKNIKAETYTYNLSKKEKQKQRLKID 209


>gi|306835906|ref|ZP_07468899.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49726]
 gi|304568180|gb|EFM43752.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49726]
          Length = 233

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + +D ET   +    R    A VR+D +  +                    A  + GIT 
Sbjct: 19  LAFDLETTSANPKDARIVTSALVRIDGRDVQKVEHLA-----DPGIEIPQAATDVHGITT 73

Query: 66  QKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +KA  +G    E  +               +I YN                         
Sbjct: 74  EKAQAEGRPHEEVLKDTVDAIKSAWEDGLTLIVYNAAFDLTVL----------------- 116

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +    + +   +   Y       +W           L  +    G+E  NAH+A AD  
Sbjct: 117 RSLTGDFTVTGPVFDPYVIDRVSDKW-----RKGKRTLGAVCEHYGVELGNAHEATADAL 171

Query: 183 ATLALVWLIREKKPKLFEYL 202
           A   + W    +       +
Sbjct: 172 AAARVAWKQVRQHYPNLAQM 191


>gi|225677154|ref|ZP_03788153.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590821|gb|EEH12049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 231

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 29/223 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  +   V       +I + +VF      +      +  I GI+
Sbjct: 8   IVLDTETTGLDTGSGHRIIEIGCV---ELINRIPTGKVFHRYLNPERDIPYHSFKIHGIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  ++ +     F S     I+  +N  FD  +      +           +
Sbjct: 65  EEFLEDKPL-FSDVALEFLDFISN---DILVIHNAEFDVKFLNMELSKLNAGLI-----S 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +A SP                L  L     I   N   H A  D  
Sbjct: 116 SDRVLDTLPLARKKFAGSPA--------------SLNALCKRFDISLENRELHGALVDAQ 161

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
               +   +              ++ N       ++N+TP  H
Sbjct: 162 LLAKVYVELTGGLQTFLFDNECNQDSNSTFVQHKVRNLTPREH 204


>gi|198282567|ref|YP_002218888.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667091|ref|YP_002424758.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247088|gb|ACH82681.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519304|gb|ACK79890.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 201

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 67/205 (32%), Gaps = 27/205 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A + +  +      + +   F  +P    + DP A+  TG
Sbjct: 14  VVVDVETAGFDSERNALLEVAAIIIGGEVGQLRPVATHH-FQVQPFAGAVLDPAALAFTG 72

Query: 63  ITPQKALRDGVVEAEFSRRIHQ------FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P +ALR  V E E  R I +        +     I+  +N  FD  + +    R    
Sbjct: 73  IDPFQALRGAVSEEEALRGIFRPVRTAVKVAQCRRAILVGHNAAFDLSFIKAAEKRTGVK 132

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +      N    +   D +        + +   +                   +H  AH 
Sbjct: 133 N------NPFHLFSTFDTVSLAGLAYGETVLAKAALAAGLD-----------WDHTQAHS 175

Query: 177 AKADVYATLALVWLIREKKPKLFEY 201
           A  D   T  L   I  +     EY
Sbjct: 176 ALYDARQTAELFCRIVNRYDLNREY 200


>gi|225077243|ref|ZP_03720442.1| hypothetical protein NEIFLAOT_02298 [Neisseria flavescens
           NRL30031/H210]
 gi|224951387|gb|EEG32596.1| hypothetical protein NEIFLAOT_02298 [Neisseria flavescens
           NRL30031/H210]
          Length = 230

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+    D E  G +   DR  + A +  D     +  ++V+    +D+ L   D      
Sbjct: 51  NNLCWLDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDGMDEWNTAT 110

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115
            G T   Q+     + EAE  + +  F S         +  N+I  D  +          
Sbjct: 111 HGRTGLTQRVRESKLTEAEVEQNLLDFMSAWIPEKSTPMCGNSIHQDRRFMVKYMPHLEA 170

Query: 116 DSYRW 120
             +  
Sbjct: 171 YFHYR 175


>gi|218265111|ref|ZP_03478699.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221600|gb|EEC94250.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii
           DSM 18315]
          Length = 174

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 54/193 (27%), Gaps = 28/193 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           + +    + I+S      +P  ++        + 
Sbjct: 1   MERFAAIDFET--ANGKRSSICSIG-IAIIEDNKVIDSIYTL-VRPYPNF-YTRFTTAVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q  +     E E    I           +  +N  FD+   R              
Sbjct: 56  GITMQDTIDSPDFE-EVWSEIAGKLQD---IPLVAHNSPFDEGCLRAA------------ 99

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   +  D+    Y F               + +LQ +A   G +    H A AD 
Sbjct: 100 -------HEAYDLAYPKYQFYCTCRLSRRMYPFLVNHQLQTVAAHCGYDLTYHHHAMADA 152

Query: 182 YATLALVWLIREK 194
           YA   +   +  +
Sbjct: 153 YACAHIAATMMRE 165


>gi|138894977|ref|YP_001125430.1| hypothetical protein GTNG_1315 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266490|gb|ABO66685.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 242

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 59/201 (29%), Gaps = 30/201 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           FVI D ET G      D     A  +         +          +         +TGI
Sbjct: 62  FVIIDMETTGFSPQQGDEILAMAAAKT-VNGLVTGTYMTL---VKPEKPIPEHISDLTGI 117

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  +      AE  R    F S     ++GY+    D  + R++ +R+      +   
Sbjct: 118 EAKDVVFAP-PLAEALRTFVPFISA--GVLVGYHIGH-DLSFLRHVLWRH------YRQK 167

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D+  ++  +                     L D     GI+    H A  DV A
Sbjct: 168 WSWRFVDMQPIVSLVRH---------------PCPTLDDALACYGIDCPRRHTADGDVEA 212

Query: 184 TLALVWLIREKKPKLFEYLYD 204
            + L  ++  +  +L      
Sbjct: 213 MVKLWAILLGELRELGIETLH 233


>gi|313681496|ref|YP_004059234.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154356|gb|ADR33034.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 267

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 30/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F I D E+ G   A  +  +   V++ +  + I++ E   +C          +   ITGI
Sbjct: 65  FCIVDVESNGSKPAHHQIIEIGAVKL-QNGKIIDTYESLVYC-----TDISDQIQEITGI 118

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             ++ L+        S+ + +F       I   ++ +FD  +   +  R           
Sbjct: 119 KTEQTLKAPA----MSKVMREFRLFLGDAIFVGHDAKFDYNFVSAMMERVGL------SK 168

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
             N     +D+         +       +     +K               H A +D   
Sbjct: 169 LLNRSLCTIDLA--ERTIESERYGLAYLNTALELYKEAT-----------HHRALSDAMT 215

Query: 184 TLALVWLI 191
           T  L+  +
Sbjct: 216 TTKLLKRV 223


>gi|300813469|ref|ZP_07093813.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512418|gb|EFK39574.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 297

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 27/195 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V+ D ET G D   +   +   V+V+      E  E F      +   +     +TG
Sbjct: 128 KPYVVIDIETDGLDFDKNLIIEIGAVKVEN-----EKFEEFTRLIKYNKKLNSTIKDLTG 182

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  +    +G+   E       F       I+GYN   +D  +    F     +      
Sbjct: 183 IDEKLLNEEGIELKEALSLFKTFIKDYP--ILGYN-TSYDIKFLNKSFLDLGMEPIAN-- 237

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 +DL+  ++                    ++KLQ    A GI     H A  D  
Sbjct: 238 ----KVYDLMTFVKKEKILL-------------PNYKLQTALQAYGINKQVPHRALEDSR 280

Query: 183 ATLALVWLIREKKPK 197
            T  L   + + +  
Sbjct: 281 LTAELSTKVNKFRDM 295


>gi|283833269|ref|ZP_06353010.1| ribonuclease T [Citrobacter youngae ATCC 29220]
 gi|291070906|gb|EFE09015.1| ribonuclease T [Citrobacter youngae ATCC 29220]
          Length = 215

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNNPLRGAVSEYDALHAIFKMVRKGIKESGCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      LA     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLSLGQTVLSKACLAAGMEFDGNQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTERTAVLFCEIVNR 200


>gi|237731384|ref|ZP_04561865.1| ribonuclease T [Citrobacter sp. 30_2]
 gi|226906923|gb|EEH92841.1| ribonuclease T [Citrobacter sp. 30_2]
          Length = 215

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      LA     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLSLGQTVLSKACLAAGMEFDGNQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTERTAVLFCEIVNR 200


>gi|153876055|ref|ZP_02003569.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS]
 gi|152067479|gb|EDN66429.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS]
          Length = 239

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 46/193 (23%), Gaps = 26/193 (13%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G       R  +   + +             F     D   D EA+ + GIT
Sbjct: 4   IALDTETTGLSVKDGHRIIEIGCIEI-LNRRVTNKYYHQF--LQPDRKSDTEALAVHGIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          E       F       I   +N  FD  +          D        
Sbjct: 61  HEFLKDKPR-FREIVNDFMNFIKGAELLI---HNAAFDMSFINRELELLHQDWQPLE--- 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                         Y    D +             L  L    G+++ N   H A  D  
Sbjct: 114 -------------HYCKITDSLVLAKERHPGQKNNLDALCKRYGVDNSNRQLHGALLDAE 160

Query: 183 ATLALVWLIREKK 195
               +   +  ++
Sbjct: 161 ILAEVYLTMTAEQ 173


>gi|189235963|ref|XP_969322.2| PREDICTED: similar to p15-2a protein [Tribolium castaneum]
          Length = 292

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 18/128 (14%)

Query: 3   NHFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIESTEVFFCKP-----------A 48
             FV +D ET G         R  +F  V V      I       CK             
Sbjct: 5   KTFVFFDLETTGLPKFEENRTRITEFCAVAVRADH--IGLQTAQKCKLPRVQSKLSLCFN 62

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYS 106
                 P+A  +TG++ +         ++    I  +   +    C++ +N   FD    
Sbjct: 63  PARAICPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLDVNEKPICLVAHNGNEFDFPIL 122

Query: 107 RNIFYRNF 114
           R       
Sbjct: 123 RAEIENTG 130


>gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
 gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
          Length = 283

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 70/250 (28%), Gaps = 32/250 (12%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            +V  D ET G      D+  Q + ++     + +++ +        D   +  A  +  
Sbjct: 14  SYVSVDTETTGLYPMYGDKIIQLSAIKYIDD-KLVDTFDTL---INPDGSNN-NAKSVNN 68

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+            E       F           +N+ FD  + ++   +          
Sbjct: 69  ISESSLKNQP-TFDEVIGDFVNFVED---LPWVGHNLSFDFSFLKSEELKIA-------- 116

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               +  D L + R+IY              G    KLQ LA    I++ N H++  D  
Sbjct: 117 SFKKNSVDTLQIARSIY--------------GNKGNKLQQLAKKFNIDYKNLHNSLYDAQ 162

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
              +L   +R           + ++ +     +   +                   +I  
Sbjct: 163 IAASLYQHLRSVFQTNKCKKINKKDIDVTNNSLSGAHFAFTGSFKEFPDRKEITKLIIKN 222

Query: 243 VAWHPRYKDS 252
             + P     
Sbjct: 223 GGYVPNGHRC 232


>gi|197336459|ref|YP_002157302.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
 gi|197317949|gb|ACH67396.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
          Length = 238

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G D   +       V    +      ++ +F K  D    +  +V I GIT
Sbjct: 48  FVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQDSL--EENSVVIHGIT 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +  R + Q        ++  +  R +         R+F+D+   S   
Sbjct: 106 HSDLQGAP----DLRRILEQVLDALAGKVVVVHYRRIE---------RDFFDTNLRSLIG 152

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQ---WPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               + ++D M+    +  +  +      +     S +L +  L  G+     H A  D 
Sbjct: 153 EGIVFPVVDTMQIEGDYQQEQAKGLINWLKGKRPESIRLANTRLRYGLPSYPPHHALTDA 212

Query: 182 YATLALVWLIREKK 195
            AT  L        
Sbjct: 213 IATAELFQAQVRYH 226


>gi|296273413|ref|YP_003656044.1| exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097587|gb|ADG93537.1| Exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
          Length = 252

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 30/207 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V++D ET G +   DR  Q   + VD +   +E  +        D     EA+ + 
Sbjct: 1   MPKYVLFDTETTG-NQEEDRIIQLGAMIVDAK-APVEVYDELCFS---DVEIKLEAMEVH 55

Query: 62  GITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            ITP   +      + +F +++ ++     +  +  +NI FD    +   +         
Sbjct: 56  NITPDMIIGKPEATQTKFYQKLQEY--NNPSNYLIAHNINFDLGMIKKEGF--------- 104

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-----GIEHVNAH 175
                 S++ +LD +R      P+    P        + L                + AH
Sbjct: 105 -----ESQYQILDTLRCAQHLFPEL---PYHRLQYLRYALDIYMDEEEEAAKHNITIKAH 156

Query: 176 DAKADVYATLALVWLIREKKPKLFEYL 202
           DA  DV      +  +  K    +   
Sbjct: 157 DAIGDVLVMKLFLSQLVAKCRTAYPDF 183


>gi|149912883|ref|ZP_01901417.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b]
 gi|149813289|gb|EDM73115.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b]
          Length = 244

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 49/207 (23%), Gaps = 36/207 (17%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   + +            F            EA  + GI 
Sbjct: 4   IVLDTETTGFDPEQGDRIVEIGALEL-YNHMPTGR--TFHHYINPGRGMPQEAFEVHGIG 60

Query: 65  PQKALRDGVVE----------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P   L                  F    + F        +  +N  FD  +         
Sbjct: 61  PD-LLDAPRPPRPGEITLRDKPPFDHVANAFIEFVGNAKLVIHNAAFDMKFLNAELGWLK 119

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                W         D L + R  +  SP                L  L     I++   
Sbjct: 120 LPLLPWEQA-----IDTLAIARQKFPGSPA--------------SLDALCRRFAIDNTAR 160

Query: 175 --HDAKADVYATLALVWLIREKKPKLF 199
             H A  D      +   +   +   F
Sbjct: 161 TLHGALLDSEILAEVYLELIGGRQPDF 187


>gi|83745794|ref|ZP_00942851.1| Oligoribonuclease [Ralstonia solanacearum UW551]
 gi|83727484|gb|EAP74605.1| Oligoribonuclease [Ralstonia solanacearum UW551]
          Length = 289

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60
           N+ V  D E  G     DR  + A V  D +   +    V     +D+ L   +A     
Sbjct: 98  NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQSDEILDGMDAWNKGT 157

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    K       EA+    +  F       +   +  N+I  D  +      +   
Sbjct: 158 HGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEA 217

Query: 116 DSYRW 120
             +  
Sbjct: 218 YFHYR 222


>gi|309379479|emb|CBX21845.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 187

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 4   KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 64  THGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|305433007|ref|ZP_07402163.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20]
 gi|304443708|gb|EFM36365.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20]
          Length = 253

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  +   +  +   V++ +  ++I+       +  +          +TGI 
Sbjct: 72  FCIVDIESTGG-IKNGQILEIGAVKI-KNLQEIDRFSSL-VQVKE---IPENITELTGIN 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         ++ ++ F       I   +N+RFD  +         +         
Sbjct: 126 LDMVKDAPS----LTKVLNDFRLFLKDSIFVAHNVRFDYGFISKALNECGFGILLN---- 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   ++  +                  +  +KL  L    GI++ + H A  D  A 
Sbjct: 178 --RRICTIEFAQCC--------------IESPRYKLDVLKELLGIKNAH-HRALNDALAA 220

Query: 185 LALVWLI 191
             +    
Sbjct: 221 AEIFKHC 227


>gi|90409038|ref|ZP_01217165.1| ribonuclease T [Psychromonas sp. CNPT3]
 gi|90309845|gb|EAS38003.1| ribonuclease T [Psychromonas sp. CNPT3]
          Length = 204

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 66/205 (32%), Gaps = 26/205 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEV-FFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +   +D Q     +  + F  +P +    DP+A+  TG
Sbjct: 15  VIIDIETSGLNSQTDAILEIAAIFPAMDEQGYLYSAQTIHFNVQPFEGANMDPKALEFTG 74

Query: 63  ITPQKALRDGVVEAEFSRRI------HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  + E E    I      HQ  +  N  I+  +N  FD  +      R  + 
Sbjct: 75  IDPFNPLRGAIDEKEVLTEIFKLVRKHQKINDCNRSILVAHNAAFDQGFINKASERCNFK 134

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          +  +M      +    Q                       +  AH 
Sbjct: 135 RIPFHPFVCFDTASMAGLMLGQTVLAKACEQ-----------------ANIDYNNEEAHS 177

Query: 177 AKADVYATLALVWLIREKKPKLFEY 201
           A  D   T  L + +  K   L  +
Sbjct: 178 ALYDTQVTADLFFYMVNKLKALGGW 202


>gi|262372107|ref|ZP_06065386.1| ribonuclease HI [Acinetobacter junii SH205]
 gi|262312132|gb|EEY93217.1| ribonuclease HI [Acinetobacter junii SH205]
          Length = 448

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 223 LILDTETTGFYYQDNDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVDVHGIT 278

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +         AE +  + +F        I  +N  FD  +    F R    
Sbjct: 279 DEFLADKPK-YAEIADVLFEFLKGAE---IIAHNATFDMNFLDMEFKRAGLP 326


>gi|326562712|gb|EGE13014.1| ribonuclease T [Moraxella catarrhalis 103P14B1]
 gi|326568721|gb|EGE18791.1| ribonuclease T [Moraxella catarrhalis BC8]
 gi|326574186|gb|EGE24134.1| ribonuclease T [Moraxella catarrhalis 101P30B1]
 gi|326575625|gb|EGE25549.1| ribonuclease T [Moraxella catarrhalis O35E]
          Length = 232

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 66/217 (30%), Gaps = 31/217 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A   + +D               +P D    +P A+  TG
Sbjct: 22  VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81

Query: 63  ITPQKALRDGVVEAE--FSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P    R  + E E    RRI +             CI+  +N  FD  +      R  
Sbjct: 82  INPDSPFRKAISEDEKTALRRIFKALKALKKEHSCRQCILVGHNAHFDLGFLNAAIARTN 141

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN- 173
                    +    + +LD +          +             L    +  G+E  N 
Sbjct: 142 -----SKNHSPFHTFSVLDTVSFAALTYGHTV-------------LAKTCMIAGLEFDNQ 183

Query: 174 -AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
            AH A  D   T  L   I  +   L     +    +
Sbjct: 184 HAHSALYDAQKTAELFCHIVNQNTLLSTNHANLTQND 220


>gi|121634222|ref|YP_974467.1| oligoribonuclease [Neisseria meningitidis FAM18]
 gi|166216273|sp|A1KS35|ORN_NEIMF RecName: Full=Oligoribonuclease
 gi|120865928|emb|CAM09665.1| putative oligoribonuclease [Neisseria meningitidis FAM18]
 gi|261393203|emb|CAX50822.1| oligoribonuclease [Neisseria meningitidis 8013]
 gi|325131506|gb|EGC54213.1| oligoribonuclease [Neisseria meningitidis M6190]
 gi|325137552|gb|EGC60134.1| oligoribonuclease [Neisseria meningitidis ES14902]
 gi|325141599|gb|EGC64064.1| oligoribonuclease [Neisseria meningitidis 961-5945]
 gi|325197638|gb|ADY93094.1| oligoribonuclease [Neisseria meningitidis G2136]
          Length = 187

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 4   KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTA 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 64  THGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATPMCGNSIHQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|296102681|ref|YP_003612827.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295057140|gb|ADF61878.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 216

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 66/214 (30%), Gaps = 26/214 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D +     ++T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEEGWLTPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           +  I+  +N  FD  ++     R    
Sbjct: 80  IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCSRAIMVAHNATFDHSFTMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      +      +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACITAGIEFDGTQAHS 182

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
           A  D   T  L   I  +  +L  +     +  +
Sbjct: 183 ALYDTERTAELFCEIVNRWKRLGGWPLAMGDSEE 216


>gi|74316107|ref|YP_313847.1| exonuclease [Thiobacillus denitrificans ATCC 25259]
 gi|74055602|gb|AAZ96042.1| Exonuclease [Thiobacillus denitrificans ATCC 25259]
          Length = 233

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 57/188 (30%), Gaps = 23/188 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G D   DR      V V R   ++   +        D + +   + I GI  
Sbjct: 43  VVVDVETSGLDPRRDRLIAIGAVAVSRGKVQLG--DSLEIVLQQDTVSEKGNILIHGI-G 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A R GV  A+    +  F        +   ++ FD    R          +  +W + 
Sbjct: 100 GTAQRAGVPPADA---LLAFLEYLGKDPLVAFHVAFDAPMIRRAMKAFLGLDFSHAWADL 156

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L                           L D      I +   H+A AD  +T 
Sbjct: 157 AYVAPAL-----------------YPRLARRRRSLDDWMSEFKIGNYARHNALADALSTA 199

Query: 186 ALVWLIRE 193
            L+  +R+
Sbjct: 200 QLLLALRK 207


>gi|326565468|gb|EGE15639.1| ribonuclease T [Moraxella catarrhalis 12P80B1]
 gi|326572590|gb|EGE22579.1| ribonuclease T [Moraxella catarrhalis CO72]
          Length = 232

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 66/217 (30%), Gaps = 31/217 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A   + +D               +P D    +P A+  TG
Sbjct: 22  VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81

Query: 63  ITPQKALRDGVVEAE--FSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P    R  + E E    RRI +             CI+  +N  FD  +      R  
Sbjct: 82  INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN- 173
                    +    + +LD +          +             L    +  G+E  N 
Sbjct: 142 -----SKNHSPFHTFSVLDTVSFAALTYGHTV-------------LAKTCMIAGLEFDNQ 183

Query: 174 -AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
            AH A  D   T  L   I  +   L     +    +
Sbjct: 184 HAHSALYDAQKTAELFCHIVNQNTLLSTNHANLTQND 220


>gi|121582521|ref|YP_974053.1| exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
 gi|120608579|gb|ABM44318.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
          Length = 302

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 61/186 (32%), Gaps = 27/186 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G      D   + A   VD     +        KP       PEA  I GIT
Sbjct: 133 VYMDTETTGLYGGCGDELLELA--LVDDAGNVL---LDSLVKPDRHTE-WPEAQAIHGIT 186

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P   +    +E+    R+        T ++ YN                F         +
Sbjct: 187 PADVMNAPSLES-LLPRLLAVIEDAGT-LVIYNAGFDLA----------FLPDAVRPVAS 234

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKADVYA 183
             +       + A++AFS    +W  R       KL   A A G     +AH A+AD  A
Sbjct: 235 NKA-------LCAMHAFSLHAGEWDERRQSYRWHKLGVAACAAGHRWEGSAHRARADALA 287

Query: 184 TLALVW 189
           T ++  
Sbjct: 288 TRSVWH 293


>gi|323187079|gb|EFZ72395.1| ribonuclease T [Escherichia coli RN587/1]
          Length = 215

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  + E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAISEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|220935624|ref|YP_002514523.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996934|gb|ACL73536.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7]
          Length = 216

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 62/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   Q A V  R+D + +     T  F  +P +    DP+++ + G
Sbjct: 20  VVVDVETGGFNPRTDALLQVAAVLLRMDPEGQLYRHQTLSFHVQPFEGANLDPKSLEVNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQ------FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR    E +    + +        +     I+  +N  FD  +      R    
Sbjct: 80  INPWHPLRIAHPEKDALATVFRGVREEMKLNACKRAILVGHNAGFDLSFIHQGAERAGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +  LD +          +   +             A      +  AH 
Sbjct: 140 ------RNPFHPFSSLDTVTLSAMAFGQTVLARAVQ-----------AAGMEWSNSEAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 183 AVYDAEKTADLFCHVINR 200


>gi|167626987|ref|YP_001677487.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596988|gb|ABZ86986.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 178

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 49/163 (30%), Gaps = 9/163 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVF 59
           T++ V  D E  G DV   R  + A +  D+    I   E      +D+ L       + 
Sbjct: 4   TDNLVWIDLEMTGLDVDNCRIIEIAAIITDKNLNIIAEAEPIAIHQSDEILNSMNEWCIK 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
           + G T   Q+         +  ++I  F           +  N+I  D  +     Y   
Sbjct: 64  VHGETGLTQRVKDSKTSLKQAEQKILVFIKEYVPYQSSPLCGNSIWQDRRFL--AKYMPD 121

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
            D Y        +   LL+                + DD   S
Sbjct: 122 IDDYCHYRMLDVTSLKLLNEYWGDGESFYKKSTHKALDDIRES 164


>gi|146311450|ref|YP_001176524.1| ribonuclease T [Enterobacter sp. 638]
 gi|166991090|sp|A4W9U3|RNT_ENT38 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|145318326|gb|ABP60473.1| RNAse T [Enterobacter sp. 638]
          Length = 224

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q     ++T  F   P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVDPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I++           N  I+  +N  FD  +      R    
Sbjct: 80  IDPHNPLRGAVSEYDALHAIYKMVRKGMKDSNCNRAIMVAHNATFDHSFMMAASERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      +      +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACITAGIDFDGNQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTERTAELFCEIVNR 200


>gi|328951319|ref|YP_004368654.1| Exonuclease RNase T and DNA polymerase III [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451643|gb|AEB12544.1| Exonuclease RNase T and DNA polymerase III [Marinithermus
           hydrothermalis DSM 14884]
          Length = 185

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 49/188 (26%), Gaps = 14/188 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +   D ET G +   D+      V V     +         +P    +     +    I 
Sbjct: 6   YWALDVETSGLNPRRDQILAVGMVPVRGGAVRCREAFYSLVRPPSPAVVPLWGLKAHHIR 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P +        AE  R + +        ++ ++    D  + R  +    +        +
Sbjct: 66  PVELRGAP-PLAEVLREVDRRLR--GGALLVHHA-AVDVAFLRRAYRALGWPWPAPRVVD 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                + L   RA+                     L       G+     H A  D  AT
Sbjct: 122 TARLLERLARRRAL----------LEPYRAPPPLDLAGARAYLGLPPYPQHHALVDALAT 171

Query: 185 LALVWLIR 192
             L   ++
Sbjct: 172 AELFLALQ 179


>gi|229821534|ref|YP_002883060.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae
           DSM 12333]
 gi|229567447|gb|ACQ81298.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae
           DSM 12333]
          Length = 283

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 16/192 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DVA DR    A + V    + +   +               A  I G+T + 
Sbjct: 15  FDTETTGVDVAHDRIVT-AALVVRHGLQGL--PQERTWIIDPGVEIPEAASAIHGVTTEH 71

Query: 68  ALRDGVVE--AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           A R G     A          ++ +   +   N  +D     +   R+   +        
Sbjct: 72  ARRLGRPPAEALEEIAAALAAAIADGAAVVAFNASYDLTILEHELVRHHLPTL------- 124

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           + R       R      P  +            KL DLA   G+     H A  DV ATL
Sbjct: 125 HERLGR----RPDAVLDPLVLDRALDRFRPGKRKLVDLAALYGVSTGELHAADVDVTATL 180

Query: 186 ALVWLIREKKPK 197
            ++  +  + P+
Sbjct: 181 DVLRALVGRFPE 192


>gi|37681316|ref|NP_935925.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|37200067|dbj|BAC95896.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
          Length = 213

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 48/195 (24%), Gaps = 20/195 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V  D ET   D         A  ++            F  +       D  +V I  
Sbjct: 30  KEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKP--FEVRLRAPQSLDSGSVKIHK 87

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  Q  +  G+ E E   ++  F    N  ++GY+                 +       
Sbjct: 88  IRHQDLVD-GLSEKEALLKLIDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLANPLV 144

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +      D L+                   +      L  +     +   + HDA  D  
Sbjct: 145 EVSQIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPIQDKHDALQDAI 189

Query: 183 ATLALVWLIREKKPK 197
           A   +   +      
Sbjct: 190 AAALVFVRLTRGDLP 204


>gi|260102659|ref|ZP_05752896.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083529|gb|EEW67649.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 249

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D ET G D+  D+      V+   + +     E F+     DY        IT +
Sbjct: 126 SIVALDIETTGLDITKDQIISIGAVKYISKSKC----ERFYRLIKTDYEIPTHISKITQL 181

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           T +K  + G+   +    + +F +  +  I+GYN     ++ +R+    N
Sbjct: 182 TSEKLNQSGIELFDALEDLKKFLA--DRLIVGYNLNFDINFLNRDYQKYN 229


>gi|85713183|ref|ZP_01044214.1| 3'-5' exonuclease [Idiomarina baltica OS145]
 gi|85693007|gb|EAQ30974.1| 3'-5' exonuclease [Idiomarina baltica OS145]
          Length = 217

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 55/210 (26%), Gaps = 22/210 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPADDYLPDPEAVFI 60
           + ++  D ET G D   D+    A V +      I       F   P  D    P    I
Sbjct: 27  HTYIAIDIETTGLDPINDQILSIAWVPIKPPMILIGEAQYHEFCVDPDVDLQQSPT---I 83

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G+T  +    G    +  + +         C++  ++   D        +    D+   
Sbjct: 84  HGLTKAQLSSGG----DVKKVLKDLEDKLYGCVMVCHHRSLD--------WSYLRDNRLT 131

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +         +       S D           +S  L      +G+    +H A  D
Sbjct: 132 ENLHFEPLGVFDTLSFEKNKMSFD----NEFQLHNSSLTLAACRTRHGLPIYTSHHAMDD 187

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
             A   L      K          +  K  
Sbjct: 188 AIACAELFLAQATKIKP-HNEKLRFLLKQS 216


>gi|260583570|ref|ZP_05851318.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
           elegans ATCC 700633]
 gi|260158196|gb|EEW93264.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
           elegans ATCC 700633]
          Length = 873

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 32/210 (15%)

Query: 1   MTNHFVIYDYETFGRDVAL---DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M   + + D ET G         R  QF    +  Q E +   +++      +     E 
Sbjct: 1   MKTSYAVVDLETTG--PKFEEGGRIFQFGCSII-EQGEIVTQVDLY---INPETTIPYEI 54

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TG+  ++  +      E +  I Q         + +N       +  +    +F + 
Sbjct: 55  QQLTGVDKKEVKQAPY-FDEVASTIFQLLE--GKTFVAHNIS-----FDYSYLVESFREL 106

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
               W       D + + +  Y                 S++LQDL     I H   H A
Sbjct: 107 AGIEWSAPC--VDTVQLAQICY-------------PTIESYRLQDLTQLLEIPHQQIHSA 151

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRN 207
            +D YAT  L     E+  +L        +
Sbjct: 152 GSDAYATAQLFLNCLEELEQLPAPTLYQMS 181


>gi|296876164|ref|ZP_06900218.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432875|gb|EFH18668.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus parasanguinis ATCC 15912]
          Length = 817

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 33/195 (16%)

Query: 2   TNHFVIYDYETF--GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
              + I D E    G +    +  Q   V +       +S E            D     
Sbjct: 5   KRKYAIVDLEATSAGSNA---KIIQVGIVII-EDGRITQSYET---DVNPHERLDEHIKQ 57

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TG+T  +  +      EF++   + F +    +   +N++FD        +   ++   
Sbjct: 58  LTGLTDARLRKAP----EFAQVAKEIFELIEDAVFVAHNVKFDANLLAEALFWEGFE--- 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                   R D +++ +  Y                  + L  LA    IE  +AH A A
Sbjct: 111 ----LTTPRIDTVELSQIFYPTLE-------------RYNLGALAAELEIELHHAHSALA 153

Query: 180 DVYATLALVWLIREK 194
           D  AT  L+  +REK
Sbjct: 154 DAMATAQLLLKLREK 168


>gi|257483040|ref|ZP_05637081.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289624800|ref|ZP_06457754.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650623|ref|ZP_06481966.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298489203|ref|ZP_07007222.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156285|gb|EFH97386.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330871170|gb|EGH05879.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330891299|gb|EGH23960.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
 gi|331011724|gb|EGH91780.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 237

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 58/194 (29%), Gaps = 25/194 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G ++  D+      V ++     +    E    +      P   AV I G+ 
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P  A+  G   AE      +F       I+G++   FD +        +     R  + +
Sbjct: 101 PS-AIAAGSEPAEALLDFMEFVGESP--ILGFHAP-FDQHMLSRALKESLDYRLRHPFFD 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +L                           L D     G+     H+A AD   T
Sbjct: 157 AAEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVT 199

Query: 185 LALVWLIREKKPKL 198
             L  ++     + 
Sbjct: 200 AELALILFSHARRQ 213


>gi|257461276|ref|ZP_05626373.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268]
 gi|257441304|gb|EEV16450.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268]
          Length = 268

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 59/187 (31%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D ET G  ++  +  +   ++     ++++  E F   P    +       +TGI 
Sbjct: 73  FCFVDIETNGG-LSNGQIIEIGAIKTRGT-QELDRFESFVYAP----VVPENITELTGIC 126

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +      A    R   F       +   +N++FD  +      +  +         
Sbjct: 127 ADDLVGAP-PLASVLERFRLFL---GDSVFVAHNVKFDYGFIDASLQKCGFGMLLN---- 178

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   +++ R              R   A  + L  L    G+++V+ H A +D  + 
Sbjct: 179 --RRLCTVELAR--------------RTIEAQRYGLGSLKELLGVQNVH-HRALSDAVSC 221

Query: 185 LALVWLI 191
             +    
Sbjct: 222 FEIFKFA 228


>gi|153834926|ref|ZP_01987593.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|156972536|ref|YP_001443443.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|148868652|gb|EDL67736.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|156524130|gb|ABU69216.1| hypothetical protein VIBHAR_00168 [Vibrio harveyi ATCC BAA-1116]
          Length = 210

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 49/194 (25%), Gaps = 20/194 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET   D         A  ++            F  +       D  +V I  I 
Sbjct: 30  FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKP--FEVRLRAPQSLDSGSVKIHHIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q  +  G+ E E   ++  F    N  ++GY+                 +       + 
Sbjct: 88  HQDLVD-GISEKEALIKLLDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLPNPLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+                   +      L  +     +   + HDA  D  + 
Sbjct: 145 SQVYHDKLE---------------RHLPNAYFDLSLDAICKHLELPIQDKHDALQDAKSA 189

Query: 185 LALVWLIREKKPKL 198
             +   + +     
Sbjct: 190 ALVYVRLTKGDLPN 203


>gi|238762495|ref|ZP_04623465.1| Ribonuclease T [Yersinia kristensenii ATCC 33638]
 gi|238699140|gb|EEP91887.1| Ribonuclease T [Yersinia kristensenii ATCC 33638]
          Length = 226

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++++    + + T  F  +P +     PEA+   G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPSNPLRGAVSEHDALHAIFKAVRKGLKDKGCNRAIIVAHNAHFDHSFVMAAAERASLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    L  GI      A
Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 192 HSALYDTMQTAKLFCELVNR 211


>gi|262341080|ref|YP_003283935.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272417|gb|ACY40325.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 1434

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 61/195 (31%), Gaps = 26/195 (13%)

Query: 5   FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I D ET G  ++ +          R  QF+    D   + I   + F  KP    +P 
Sbjct: 2   YLIVDTETTGLPISYNFSITHTDNWPRIVQFSWQNHDILGDLI-EFKNFIIKPDHYDIPF 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             A  I GIT +KA + GV  +       +         +  +N+ FD       F R  
Sbjct: 61  -NAFKIHGITNEKAEKYGVDLSFVLCEFRKSLEKSQC--LIGHNLEFDKKVIECEFLRKK 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVN 173
            +                  +      S    + P          L +L       +  N
Sbjct: 118 IEISFKKKK-----------ILDTKEISVSYCKLPGNRKKFKWPTLSELYQKLFEEKIPN 166

Query: 174 AHDAKADVYATLALV 188
            HDA  DV AT    
Sbjct: 167 LHDAANDVKATARCF 181


>gi|27364640|ref|NP_760168.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|320155034|ref|YP_004187413.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27360785|gb|AAO09695.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6]
 gi|319930346|gb|ADV85210.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 211

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 48/195 (24%), Gaps = 20/195 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             +V  D ET   D         A  ++            F  +       D  +V I  
Sbjct: 28  KEYVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKP--FEVRLRAPQSLDSGSVKIHK 85

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  Q  +  G+ E E   ++  F    N  ++GY+                 +       
Sbjct: 86  IRHQDLVD-GLSEKEALLKLIDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLANPLV 142

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +      D L+                   +      L  +     +   + HDA  D  
Sbjct: 143 EVSQIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPIQDKHDALQDAI 187

Query: 183 ATLALVWLIREKKPK 197
           A   +   +      
Sbjct: 188 AAALVFVRLTRGDLP 202


>gi|282880255|ref|ZP_06288971.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
 gi|281305850|gb|EFA97894.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
          Length = 905

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 31/200 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY------LPDPE 56
              V++D ET G +V  D   Q A VR+ +      S  V F +   +       + +P 
Sbjct: 520 EDIVVFDTETTGLNVFEDDIVQIAAVRMRQGCVVPGSEFVVFMRTNREIPRKLGNIDNPL 579

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              I               +E  +   ++    N+ ++G+N                   
Sbjct: 580 IEEIQH-------HQLYSPSEGLKMFLEYV--GNSRLLGHNAD----------------Y 614

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
            Y     N       + +      +          +     +KL+ L     +E  N+H 
Sbjct: 615 DYHILNFNLQRYLPDIQLEERCNMYFDSLKLIRLLEPNLKEYKLKYLLSVLHLEGQNSHL 674

Query: 177 AKADVYATLALVWLIREKKP 196
           A ADV+AT ++V    EK  
Sbjct: 675 ADADVHATCSVVRHCYEKAK 694


>gi|229551811|ref|ZP_04440536.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
 gi|258539212|ref|YP_003173711.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
 gi|229314755|gb|EEN80728.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
 gi|257150888|emb|CAR89860.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
          Length = 180

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 62/205 (30%), Gaps = 28/205 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D+ET   +         A V V +    ++S              DP+ + I GIT
Sbjct: 3   FIAMDFET--ANRKRASACSLALVVVQQN-RVVDSFYTL---INPQMQFDPQNIRIHGIT 56

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P                I  F       I+  +N  FD    R    R            
Sbjct: 57  PDMVQDQP-TFDRVWPHIQMF--YTPGRIVTAHNAPFDVSVLRLTLDRYGI--------- 104

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R+ ++D ++    F P             + +L  ++ A  I   + H+A AD YA 
Sbjct: 105 AAPRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALKIPLEHHHNALADSYAC 154

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
             ++    E   +          K 
Sbjct: 155 ARILIAENEHFGEAQTKAMMKLAKA 179


>gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera sp. 301]
 gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera sp. 301]
          Length = 235

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 64/236 (27%), Gaps = 37/236 (15%)

Query: 6   VIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           +  D ET G       R  + A V      E I        F      D   D  A  + 
Sbjct: 4   IFLDTETTGLYHAQGHRVIEVAAV------EVINRRLTKQHFHYYLNPDREIDQGAQEVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +         A+ +  +  F +      +  +N  FD  +    F           
Sbjct: 58  GISLEFLQDKPH-FADIANELIAFIADSE---LIMHNAPFDVGFLNREFGLIEQKP---- 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
                        + AI A   D ++            L  L    GI++     H A  
Sbjct: 110 -------------VEAITAKITDTLKIAKEMRPGQRNSLDALCKHYGIDNSKRTLHGALL 156

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
           D      +   +   +      L    +K Q +    IQ +   V V     A  S
Sbjct: 157 DAELLADVYMAMTRGQDS----LMMELDKPQQKNSDAIQEIKQPVLVKLANQAEIS 208


>gi|217076887|ref|YP_002334603.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B]
 gi|217036740|gb|ACJ75262.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B]
          Length = 186

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 28/191 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G +    DR  + A V V +  + ++   ++      +         I GI
Sbjct: 7   YCVMDTETTGLNPYFGDRIIEIAIVPVYKN-KIVKKW-IYHSLVNPNIRIPALTEKIHGI 64

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +         +E      +  +     T  + +N      +          +        
Sbjct: 65  SNDAITDAPSLEN-IISNVRAY--AKGTIFVMHNAYVDLSFIDIATKEIGEFPINFR--- 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L++ + +Y                    L+ L     I     H A  D   
Sbjct: 119 ----YIDTLEISQVLY---------------NKKRSLESLVKEFKIADKVPHRALEDAIL 159

Query: 184 TLALVWLIREK 194
           T  +   + EK
Sbjct: 160 TAKVFLKLYEK 170


>gi|332978349|gb|EGK15074.1| DNA polymerase III, epsilon subunit [Psychrobacter sp. 1501(2011)]
          Length = 577

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 10/120 (8%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +I D ET G D    DR  +   +  V+R++    + E        +   D E + + GI
Sbjct: 308 LIMDTETTGLDALKGDRVIEVGIIELVNRKF----TGEKLHVYINPERGMDDEVIRVHGI 363

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E ++ +++F        +  +N  FD  +    F R     +     
Sbjct: 364 TEAFLADKPK-FKEVAKPLYEFMLGAE---LIAHNAPFDMSFLSMEFDRVGLSDFAEKVT 419


>gi|284037590|ref|YP_003387520.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
 gi|283816883|gb|ADB38721.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
          Length = 205

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 53/201 (26%), Gaps = 11/201 (5%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F++ D E  G +   +   Q   V  D  W +          P +       +  I  ++
Sbjct: 3   FLVLDLEMTGPEPDYNEIIQIGAVLFDDNWVERGQYLT-NVYPENKDAFSSSSEKIHNLS 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCII-------GYNNIRFDDYYSRNIFYRNFYDS 117
             +     ++  +    + ++        +                     I   NF   
Sbjct: 62  LAELEDAPMI-YDVLPEMEEWICTQLGLRVPKGQLDRTPYLRDLIICGQSVINDINFLKE 120

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HD 176
                        +L  +  +  F+   ++  +         L  +A   G    +  H+
Sbjct: 121 AYRYEKQKWPYSRVLLDLHTLAYFTFRVLK-ANGRKVPDRLSLTAIASYFGFAREDGFHN 179

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D   T   +  + +   +
Sbjct: 180 ALEDAVLTAKCLKEVFKLSEQ 200


>gi|261377592|ref|ZP_05982165.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685]
 gi|269146340|gb|EEZ72758.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685]
          Length = 244

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 61/199 (30%), Gaps = 27/199 (13%)

Query: 1   MTNHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    +I D ET G      DR  +FAG+ +    +  +     +  P  D     EA  
Sbjct: 1   MIKRQIILDTETTGLYADGGDRLVEFAGLEM-VNRQMTDKNLHLYIHPERDM--PEEAAR 57

Query: 60  ITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           + G+T +          A   R+I  F       I   +N +FD  +    F R    + 
Sbjct: 58  VHGLTIEVLEGKNAPPFARVGRQIADFLRGAELII---HNAKFDVGFLNMEFRRMGLPTV 114

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                 G +  D L + R ++                    L  L     ++      H 
Sbjct: 115 EE---LGCTITDTLSMAREMFPGQKA--------------SLDALCNRFSVDRSKRVLHG 157

Query: 177 AKADVYATLALVWLIREKK 195
           A  D      +   +  ++
Sbjct: 158 ALIDCELLGEVYLAMTRQQ 176


>gi|77412699|ref|ZP_00788952.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
 gi|77161250|gb|EAO72308.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
          Length = 240

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 20/111 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---------------CKPA 48
            +V++D ET G   A +   Q A  ++  +   IE  + F                    
Sbjct: 129 TYVVFDVETTGLSAANNDLIQIAASKM-FKGNIIEQFDEFIDPGHPLSAFTTELTGITDD 187

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI 99
             +        +TGIT               + + +F +     ++  +  
Sbjct: 188 PGHPLSAFTTELTGITDNHVRGSKP----ILQVLQEFQNFCQGTVLVAHMQ 234


>gi|320536084|ref|ZP_08036140.1| exonuclease [Treponema phagedenis F0421]
 gi|320147069|gb|EFW38629.1| exonuclease [Treponema phagedenis F0421]
          Length = 190

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 54/195 (27%), Gaps = 12/195 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N  +  D ET G +       + A +    + +             +  L   EA    
Sbjct: 1   MNT-IWCDTETTGLEPENSGAFEIAFI-FAGKGKVTCERLFKLNPLNETILYHEEAAKTH 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ ++       E E    I  FF               D        Y   +D     
Sbjct: 59  GVSEEEIRSFPPAE-EIVPNIANFFQQAIHVF-------GDGEKLTFAGYNCNFDYRHLE 110

Query: 122 WDNGNSRWDLLDVM--RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                    L D    +                    + KL  +  + G+   NAH A A
Sbjct: 111 ALFNRCGLTLADYFSKQFDALEFVKKATRQKAIPRLENLKLGTVCKSLGVNLENAHTALA 170

Query: 180 DVYATLALVWLIREK 194
           D+ AT AL   + ++
Sbjct: 171 DIQATRALCIELFKR 185


>gi|288818861|ref|YP_003433209.1| exonuclease [Hydrogenobacter thermophilus TK-6]
 gi|288788261|dbj|BAI70008.1| exonuclease [Hydrogenobacter thermophilus TK-6]
 gi|308752448|gb|ADO45931.1| Exonuclease RNase T and DNA polymerase III [Hydrogenobacter
           thermophilus TK-6]
          Length = 216

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 29/188 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET G D+  D P     ++V +    I+ ++ F+        P   ++ + GI
Sbjct: 41  TFVVCDTETTGLDLKKDEPIAIGALKV-KDLC-IDLSQSFYRLIKPQTPPKRSSIEVHGI 98

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TP         E E S+   +F     + ++GY          + +          +S  
Sbjct: 99  TPSDLDIAKERE-EVSKEFLEF--SRGSLLVGYFFYIDLVMLKKLLKSFCSVPFVPYS-- 153

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D+LD+ ++                      L ++     +   + H A  D Y 
Sbjct: 154 -----LDVLDLYKSEKHI-----------------SLDEMLSLFDLPSSSHHSALEDAYM 191

Query: 184 TLALVWLI 191
           T  +   +
Sbjct: 192 TALVFLKL 199


>gi|260770659|ref|ZP_05879590.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260614385|gb|EEX39573.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|315178389|gb|ADT85303.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218]
          Length = 212

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 20/203 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET   D         A  ++     +I +++ F  +       D  +V I  I 
Sbjct: 30  FVSLDCETTSLDPNRAELVTIAATKII--GNRILTSQPFEVRLRAPQSLDSGSVRIHRIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q  +  G+ E +   R+  F    N  ++GY+                 +       + 
Sbjct: 88  HQDLVD-GISEQDALTRLIAFI--GNRPLVGYHIRYDKKILDIACRRHLGFPLPNSLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +   D L+                   +      L  +     +   + HDA  D    
Sbjct: 145 SHIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPLQDKHDALQDAITA 189

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             +   + + +   F     + +
Sbjct: 190 ALVYVRLTKGELPAFTSSAHHSS 212


>gi|332343370|gb|AEE56704.1| ribonuclease T [Escherichia coli UMNK88]
          Length = 215

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|323462912|pdb|3NH0|A Chain A, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Aac)
 gi|323462913|pdb|3NH0|B Chain B, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Aac)
 gi|323462916|pdb|3NH1|A Chain A, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462917|pdb|3NH1|B Chain B, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462918|pdb|3NH1|C Chain C, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462919|pdb|3NH1|D Chain D, Crystal Structure Of Rnase T In Complex With A Preferred
           Ssdna (Tagg) With Two Mg In The Active Site
 gi|323462924|pdb|3NH2|A Chain A, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
 gi|323462925|pdb|3NH2|B Chain B, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
 gi|323462928|pdb|3NH2|E Chain E, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
 gi|323462929|pdb|3NH2|F Chain F, Crystal Structure Of Rnase T In Complex With A Stem Dna
           With A 3' Overhang
          Length = 235

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 40  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 100 IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 159

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 160 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 200

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 201 HSALYDTERTAVLFCEIVNR 220


>gi|322382088|ref|ZP_08056018.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153960|gb|EFX46310.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 142

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 11/100 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + ++I D ET G +         A + +D+         +F            EA  I 
Sbjct: 54  KSKYLILDTETTGIEYD-SEIVDIAIIDLDKNL-------IFASLVKPICPIPEEATMIH 105

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
           GIT +          E   ++ +  S     ++ YN    
Sbjct: 106 GITNEMVADAP-SWLEVWAQVQKLLS--GKTLLIYNADFD 142


>gi|300904499|ref|ZP_07122340.1| ribonuclease T [Escherichia coli MS 84-1]
 gi|300918020|ref|ZP_07134642.1| ribonuclease T [Escherichia coli MS 115-1]
 gi|301303165|ref|ZP_07209291.1| ribonuclease T [Escherichia coli MS 124-1]
 gi|300403565|gb|EFJ87103.1| ribonuclease T [Escherichia coli MS 84-1]
 gi|300414762|gb|EFJ98072.1| ribonuclease T [Escherichia coli MS 115-1]
 gi|300841574|gb|EFK69334.1| ribonuclease T [Escherichia coli MS 124-1]
 gi|315257547|gb|EFU37515.1| ribonuclease T [Escherichia coli MS 85-1]
          Length = 215

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|215486829|ref|YP_002329260.1| ribonuclease T [Escherichia coli O127:H6 str. E2348/69]
 gi|312966583|ref|ZP_07780803.1| ribonuclease T [Escherichia coli 2362-75]
 gi|331647141|ref|ZP_08348235.1| ribonuclease T [Escherichia coli M605]
 gi|331657625|ref|ZP_08358587.1| ribonuclease T [Escherichia coli TA206]
 gi|215264901|emb|CAS09287.1| ribonuclease T (RNase T) [Escherichia coli O127:H6 str. E2348/69]
 gi|281178725|dbj|BAI55055.1| ribonuclease T [Escherichia coli SE15]
 gi|312288693|gb|EFR16593.1| ribonuclease T [Escherichia coli 2362-75]
 gi|315299705|gb|EFU58947.1| ribonuclease T [Escherichia coli MS 16-3]
 gi|330911459|gb|EGH39969.1| ribonuclease T [Escherichia coli AA86]
 gi|331043924|gb|EGI16060.1| ribonuclease T [Escherichia coli M605]
 gi|331055873|gb|EGI27882.1| ribonuclease T [Escherichia coli TA206]
          Length = 215

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|59713121|ref|YP_205897.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59481222|gb|AAW87009.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 238

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G D   +       V    +      ++ +F K  D    +  +V I GIT
Sbjct: 48  FVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQDSL--EENSVVIHGIT 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +  R + Q        ++  +  R +         R+F+D+   S   
Sbjct: 106 HSDLQGAP----DLRRILEQVLDALAGKVVVVHYRRIE---------RDFFDANLRSLIG 152

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQ---WPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               + ++D M+    +  +  +      +     S +L +  L  G+     H A  D 
Sbjct: 153 EGIVFPVVDTMQIEGDYQQEQAKGFINWLKGKRPESIRLANTRLRYGLPSYPPHHALTDA 212

Query: 182 YATLALVWLIREKK 195
            AT  L        
Sbjct: 213 IATAELFQAQVRYH 226


>gi|16129610|ref|NP_416169.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108494|ref|AP_002274.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. W3110]
 gi|170081315|ref|YP_001730635.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]
 gi|238900868|ref|YP_002926664.1| ribonuclease T (RNase T) [Escherichia coli BW2952]
 gi|300951237|ref|ZP_07165090.1| ribonuclease T [Escherichia coli MS 116-1]
 gi|300958527|ref|ZP_07170660.1| ribonuclease T [Escherichia coli MS 175-1]
 gi|301027673|ref|ZP_07190989.1| ribonuclease T [Escherichia coli MS 196-1]
 gi|301647832|ref|ZP_07247616.1| ribonuclease T [Escherichia coli MS 146-1]
 gi|307138309|ref|ZP_07497665.1| ribonuclease T [Escherichia coli H736]
 gi|331642247|ref|ZP_08343382.1| ribonuclease T [Escherichia coli H736]
 gi|266952|sp|P30014|RNT_ECOLI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|147688|gb|AAC37008.1| RNaseT [Escherichia coli]
 gi|1787941|gb|AAC74724.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675063|dbj|BAA15418.2| ribonuclease T (RNase T) [Escherichia coli str. K12 substr. W3110]
 gi|169889150|gb|ACB02857.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]
 gi|238863473|gb|ACR65471.1| ribonuclease T (RNase T) [Escherichia coli BW2952]
 gi|260449223|gb|ACX39645.1| ribonuclease T [Escherichia coli DH1]
 gi|299879216|gb|EFI87427.1| ribonuclease T [Escherichia coli MS 196-1]
 gi|300314801|gb|EFJ64585.1| ribonuclease T [Escherichia coli MS 175-1]
 gi|300449493|gb|EFK13113.1| ribonuclease T [Escherichia coli MS 116-1]
 gi|301074022|gb|EFK88828.1| ribonuclease T [Escherichia coli MS 146-1]
 gi|309701879|emb|CBJ01191.1| ribonuclease T [Escherichia coli ETEC H10407]
 gi|315136293|dbj|BAJ43452.1| ribonuclease T [Escherichia coli DH1]
 gi|315618843|gb|EFU99426.1| ribonuclease T [Escherichia coli 3431]
 gi|323937257|gb|EGB33536.1| ribonuclease T [Escherichia coli E1520]
 gi|323940680|gb|EGB36871.1| ribonuclease T [Escherichia coli E482]
 gi|331039045|gb|EGI11265.1| ribonuclease T [Escherichia coli H736]
          Length = 215

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|15802066|ref|NP_288088.1| ribonuclease T [Escherichia coli O157:H7 EDL933]
 gi|15831615|ref|NP_310388.1| ribonuclease T [Escherichia coli O157:H7 str. Sakai]
 gi|24113043|ref|NP_707553.1| ribonuclease T [Shigella flexneri 2a str. 301]
 gi|26247900|ref|NP_753940.1| ribonuclease T [Escherichia coli CFT073]
 gi|30063168|ref|NP_837339.1| ribonuclease T [Shigella flexneri 2a str. 2457T]
 gi|74312020|ref|YP_310439.1| ribonuclease T [Shigella sonnei Ss046]
 gi|82777129|ref|YP_403478.1| ribonuclease T [Shigella dysenteriae Sd197]
 gi|91210866|ref|YP_540852.1| ribonuclease T [Escherichia coli UTI89]
 gi|110641774|ref|YP_669504.1| ribonuclease T [Escherichia coli 536]
 gi|117623836|ref|YP_852749.1| ribonuclease T [Escherichia coli APEC O1]
 gi|157159164|ref|YP_001462944.1| ribonuclease T [Escherichia coli E24377A]
 gi|157161115|ref|YP_001458433.1| ribonuclease T [Escherichia coli HS]
 gi|168752335|ref|ZP_02777357.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113]
 gi|168759015|ref|ZP_02784022.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401]
 gi|168765301|ref|ZP_02790308.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501]
 gi|168771196|ref|ZP_02796203.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486]
 gi|168775884|ref|ZP_02800891.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196]
 gi|168783923|ref|ZP_02808930.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076]
 gi|168789491|ref|ZP_02814498.1| ribonuclease T [Escherichia coli O157:H7 str. EC869]
 gi|168802776|ref|ZP_02827783.1| ribonuclease T [Escherichia coli O157:H7 str. EC508]
 gi|170019996|ref|YP_001724950.1| ribonuclease T [Escherichia coli ATCC 8739]
 gi|170681755|ref|YP_001743601.1| ribonuclease T [Escherichia coli SMS-3-5]
 gi|187731741|ref|YP_001880408.1| ribonuclease T [Shigella boydii CDC 3083-94]
 gi|188496363|ref|ZP_03003633.1| ribonuclease T [Escherichia coli 53638]
 gi|191165895|ref|ZP_03027732.1| ribonuclease T [Escherichia coli B7A]
 gi|191173445|ref|ZP_03034973.1| ribonuclease T [Escherichia coli F11]
 gi|193064949|ref|ZP_03046025.1| ribonuclease T [Escherichia coli E22]
 gi|193070264|ref|ZP_03051208.1| ribonuclease T [Escherichia coli E110019]
 gi|194426088|ref|ZP_03058644.1| ribonuclease T [Escherichia coli B171]
 gi|194436646|ref|ZP_03068747.1| ribonuclease T [Escherichia coli 101-1]
 gi|195940215|ref|ZP_03085597.1| ribonuclease T [Escherichia coli O157:H7 str. EC4024]
 gi|208810464|ref|ZP_03252340.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206]
 gi|208816877|ref|ZP_03257997.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045]
 gi|208820253|ref|ZP_03260573.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042]
 gi|209396384|ref|YP_002270721.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115]
 gi|209918966|ref|YP_002293050.1| ribonuclease T [Escherichia coli SE11]
 gi|217328725|ref|ZP_03444806.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588]
 gi|218554220|ref|YP_002387133.1| ribonuclease T [Escherichia coli IAI1]
 gi|218558523|ref|YP_002391436.1| ribonuclease T [Escherichia coli S88]
 gi|218689598|ref|YP_002397810.1| ribonuclease T [Escherichia coli ED1a]
 gi|218695215|ref|YP_002402882.1| ribonuclease T [Escherichia coli 55989]
 gi|218699780|ref|YP_002407409.1| ribonuclease T [Escherichia coli IAI39]
 gi|218705152|ref|YP_002412671.1| ribonuclease T [Escherichia coli UMN026]
 gi|227885930|ref|ZP_04003735.1| exoribonuclease T [Escherichia coli 83972]
 gi|237705597|ref|ZP_04536078.1| ribonuclease T [Escherichia sp. 3_2_53FAA]
 gi|253773389|ref|YP_003036220.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161714|ref|YP_003044822.1| ribonuclease T [Escherichia coli B str. REL606]
 gi|254793269|ref|YP_003078106.1| ribonuclease T [Escherichia coli O157:H7 str. TW14359]
 gi|256018153|ref|ZP_05432018.1| ribonuclease T [Shigella sp. D9]
 gi|260843958|ref|YP_003221736.1| ribonuclease T [Escherichia coli O103:H2 str. 12009]
 gi|260855477|ref|YP_003229368.1| ribonuclease T [Escherichia coli O26:H11 str. 11368]
 gi|260868144|ref|YP_003234546.1| ribonuclease T [Escherichia coli O111:H- str. 11128]
 gi|261227902|ref|ZP_05942183.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258364|ref|ZP_05950897.1| ribonuclease T [Escherichia coli O157:H7 str. FRIK966]
 gi|291282784|ref|YP_003499602.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615]
 gi|293405152|ref|ZP_06649144.1| ribonuclease T [Escherichia coli FVEC1412]
 gi|293409965|ref|ZP_06653541.1| ribonuclease T [Escherichia coli B354]
 gi|293414968|ref|ZP_06657611.1| ribonuclease T [Escherichia coli B185]
 gi|293446028|ref|ZP_06662450.1| ribonuclease T [Escherichia coli B088]
 gi|297520520|ref|ZP_06938906.1| ribonuclease T [Escherichia coli OP50]
 gi|298380798|ref|ZP_06990397.1| ribonuclease T [Escherichia coli FVEC1302]
 gi|300819590|ref|ZP_07099783.1| ribonuclease T [Escherichia coli MS 107-1]
 gi|300821475|ref|ZP_07101622.1| ribonuclease T [Escherichia coli MS 119-7]
 gi|300901538|ref|ZP_07119609.1| ribonuclease T [Escherichia coli MS 198-1]
 gi|300924684|ref|ZP_07140632.1| ribonuclease T [Escherichia coli MS 182-1]
 gi|300930881|ref|ZP_07146250.1| ribonuclease T [Escherichia coli MS 187-1]
 gi|300939029|ref|ZP_07153724.1| ribonuclease T [Escherichia coli MS 21-1]
 gi|300987874|ref|ZP_07178425.1| ribonuclease T [Escherichia coli MS 200-1]
 gi|300995389|ref|ZP_07181069.1| ribonuclease T [Escherichia coli MS 45-1]
 gi|301026836|ref|ZP_07190236.1| ribonuclease T [Escherichia coli MS 69-1]
 gi|301051019|ref|ZP_07197863.1| ribonuclease T [Escherichia coli MS 185-1]
 gi|301326587|ref|ZP_07219926.1| ribonuclease T [Escherichia coli MS 78-1]
 gi|306813383|ref|ZP_07447573.1| ribonuclease T [Escherichia coli NC101]
 gi|307310775|ref|ZP_07590421.1| ribonuclease T [Escherichia coli W]
 gi|309788378|ref|ZP_07682982.1| ribonuclease T [Shigella dysenteriae 1617]
 gi|309793418|ref|ZP_07687845.1| ribonuclease T [Escherichia coli MS 145-7]
 gi|312969674|ref|ZP_07783857.1| ribonuclease T [Escherichia coli 1827-70]
 gi|331653048|ref|ZP_08354053.1| ribonuclease T [Escherichia coli M718]
 gi|331663127|ref|ZP_08364037.1| ribonuclease T [Escherichia coli TA143]
 gi|331668331|ref|ZP_08369179.1| ribonuclease T [Escherichia coli TA271]
 gi|332279200|ref|ZP_08391613.1| ribonuclease T [Shigella sp. D9]
 gi|54039257|sp|P66682|RNT_ECO57 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|54039258|sp|P66683|RNT_SHIFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|54042001|sp|P66681|RNT_ECOL6 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|122423656|sp|Q1RBE3|RNT_ECOUT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123148046|sp|Q0THH6|RNT_ECOL5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123562458|sp|Q32FB8|RNT_SHIDS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123617229|sp|Q3Z208|RNT_SHISS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|166228563|sp|A1ABJ5|RNT_ECOK1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|166991088|sp|A7ZMB5|RNT_ECO24 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|166991089|sp|A8A0J6|RNT_ECOHS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|12515647|gb|AAG56641.1|AE005388_6 RNase T, degrades tRNA [Escherichia coli O157:H7 str. EDL933]
 gi|26108303|gb|AAN80505.1|AE016761_80 Ribonuclease T [Escherichia coli CFT073]
 gi|13361828|dbj|BAB35784.1| RNase T [Escherichia coli O157:H7 str. Sakai]
 gi|24052011|gb|AAN43260.1| RNase T [Shigella flexneri 2a str. 301]
 gi|30041420|gb|AAP17148.1| RNase T [Shigella flexneri 2a str. 2457T]
 gi|73855497|gb|AAZ88204.1| RNase T [Shigella sonnei Ss046]
 gi|81241277|gb|ABB61987.1| RNase T [Shigella dysenteriae Sd197]
 gi|91072440|gb|ABE07321.1| RNase T, degrades tRNA [Escherichia coli UTI89]
 gi|110343366|gb|ABG69603.1| ribonuclease T [Escherichia coli 536]
 gi|115512960|gb|ABJ01035.1| RNase T [Escherichia coli APEC O1]
 gi|157066795|gb|ABV06050.1| ribonuclease T [Escherichia coli HS]
 gi|157081194|gb|ABV20902.1| ribonuclease T [Escherichia coli E24377A]
 gi|169754924|gb|ACA77623.1| ribonuclease T [Escherichia coli ATCC 8739]
 gi|170519473|gb|ACB17651.1| ribonuclease T [Escherichia coli SMS-3-5]
 gi|187428733|gb|ACD08007.1| ribonuclease T [Shigella boydii CDC 3083-94]
 gi|187768648|gb|EDU32492.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196]
 gi|188013802|gb|EDU51924.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113]
 gi|188491562|gb|EDU66665.1| ribonuclease T [Escherichia coli 53638]
 gi|188998818|gb|EDU67804.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076]
 gi|189354299|gb|EDU72718.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401]
 gi|189360025|gb|EDU78444.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486]
 gi|189364907|gb|EDU83323.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501]
 gi|189370964|gb|EDU89380.1| ribonuclease T [Escherichia coli O157:H7 str. EC869]
 gi|189375329|gb|EDU93745.1| ribonuclease T [Escherichia coli O157:H7 str. EC508]
 gi|190904026|gb|EDV63738.1| ribonuclease T [Escherichia coli B7A]
 gi|190906287|gb|EDV65898.1| ribonuclease T [Escherichia coli F11]
 gi|192927436|gb|EDV82054.1| ribonuclease T [Escherichia coli E22]
 gi|192956445|gb|EDV86904.1| ribonuclease T [Escherichia coli E110019]
 gi|194416143|gb|EDX32409.1| ribonuclease T [Escherichia coli B171]
 gi|194424678|gb|EDX40664.1| ribonuclease T [Escherichia coli 101-1]
 gi|208724980|gb|EDZ74687.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206]
 gi|208731220|gb|EDZ79909.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045]
 gi|208740376|gb|EDZ88058.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042]
 gi|209157784|gb|ACI35217.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115]
 gi|209769438|gb|ACI83031.1| RNase T [Escherichia coli]
 gi|209769440|gb|ACI83032.1| RNase T [Escherichia coli]
 gi|209769442|gb|ACI83033.1| RNase T [Escherichia coli]
 gi|209769444|gb|ACI83034.1| RNase T [Escherichia coli]
 gi|209769446|gb|ACI83035.1| RNase T [Escherichia coli]
 gi|209912225|dbj|BAG77299.1| ribonuclease T [Escherichia coli SE11]
 gi|217318072|gb|EEC26499.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588]
 gi|218351947|emb|CAU97679.1| ribonuclease T (RNase T) [Escherichia coli 55989]
 gi|218360988|emb|CAQ98561.1| ribonuclease T (RNase T) [Escherichia coli IAI1]
 gi|218365292|emb|CAR03013.1| ribonuclease T (RNase T) [Escherichia coli S88]
 gi|218369766|emb|CAR17537.1| ribonuclease T (RNase T) [Escherichia coli IAI39]
 gi|218427162|emb|CAR08045.2| ribonuclease T (RNase T) [Escherichia coli ED1a]
 gi|218432249|emb|CAR13139.1| ribonuclease T (RNase T) [Escherichia coli UMN026]
 gi|222033411|emb|CAP76152.1| ribonuclease T [Escherichia coli LF82]
 gi|226900354|gb|EEH86613.1| ribonuclease T [Escherichia sp. 3_2_53FAA]
 gi|227837109|gb|EEJ47575.1| exoribonuclease T [Escherichia coli 83972]
 gi|242377382|emb|CAQ32129.1| RNase T [Escherichia coli BL21(DE3)]
 gi|253324433|gb|ACT29035.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973615|gb|ACT39286.1| ribonuclease T [Escherichia coli B str. REL606]
 gi|253977810|gb|ACT43480.1| ribonuclease T [Escherichia coli BL21(DE3)]
 gi|254592669|gb|ACT72030.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. TW14359]
 gi|257754126|dbj|BAI25628.1| ribonuclease T [Escherichia coli O26:H11 str. 11368]
 gi|257759105|dbj|BAI30602.1| ribonuclease T [Escherichia coli O103:H2 str. 12009]
 gi|257764500|dbj|BAI35995.1| ribonuclease T [Escherichia coli O111:H- str. 11128]
 gi|281601087|gb|ADA74071.1| Ribonuclease T [Shigella flexneri 2002017]
 gi|284921576|emb|CBG34648.1| ribonuclease T [Escherichia coli 042]
 gi|290762657|gb|ADD56618.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615]
 gi|291322858|gb|EFE62286.1| ribonuclease T [Escherichia coli B088]
 gi|291427360|gb|EFF00387.1| ribonuclease T [Escherichia coli FVEC1412]
 gi|291432616|gb|EFF05595.1| ribonuclease T [Escherichia coli B185]
 gi|291470433|gb|EFF12917.1| ribonuclease T [Escherichia coli B354]
 gi|294491548|gb|ADE90304.1| ribonuclease T [Escherichia coli IHE3034]
 gi|298278240|gb|EFI19754.1| ribonuclease T [Escherichia coli FVEC1302]
 gi|300297314|gb|EFJ53699.1| ribonuclease T [Escherichia coli MS 185-1]
 gi|300306022|gb|EFJ60542.1| ribonuclease T [Escherichia coli MS 200-1]
 gi|300355068|gb|EFJ70938.1| ribonuclease T [Escherichia coli MS 198-1]
 gi|300395276|gb|EFJ78814.1| ribonuclease T [Escherichia coli MS 69-1]
 gi|300406150|gb|EFJ89688.1| ribonuclease T [Escherichia coli MS 45-1]
 gi|300419111|gb|EFK02422.1| ribonuclease T [Escherichia coli MS 182-1]
 gi|300456057|gb|EFK19550.1| ribonuclease T [Escherichia coli MS 21-1]
 gi|300461297|gb|EFK24790.1| ribonuclease T [Escherichia coli MS 187-1]
 gi|300525978|gb|EFK47047.1| ribonuclease T [Escherichia coli MS 119-7]
 gi|300527838|gb|EFK48900.1| ribonuclease T [Escherichia coli MS 107-1]
 gi|300846749|gb|EFK74509.1| ribonuclease T [Escherichia coli MS 78-1]
 gi|305853128|gb|EFM53568.1| ribonuclease T [Escherichia coli NC101]
 gi|306908953|gb|EFN39449.1| ribonuclease T [Escherichia coli W]
 gi|307553675|gb|ADN46450.1| ribonuclease T [Escherichia coli ABU 83972]
 gi|307626861|gb|ADN71165.1| ribonuclease T [Escherichia coli UM146]
 gi|308123005|gb|EFO60267.1| ribonuclease T [Escherichia coli MS 145-7]
 gi|308923760|gb|EFP69263.1| ribonuclease T [Shigella dysenteriae 1617]
 gi|310337959|gb|EFQ03048.1| ribonuclease T [Escherichia coli 1827-70]
 gi|312946253|gb|ADR27080.1| ribonuclease T [Escherichia coli O83:H1 str. NRG 857C]
 gi|313648931|gb|EFS13368.1| ribonuclease T [Shigella flexneri 2a str. 2457T]
 gi|315060959|gb|ADT75286.1| ribonuclease T (RNase T) [Escherichia coli W]
 gi|315286357|gb|EFU45793.1| ribonuclease T [Escherichia coli MS 110-3]
 gi|320174139|gb|EFW49304.1| Ribonuclease T [Shigella dysenteriae CDC 74-1112]
 gi|320181325|gb|EFW56244.1| Ribonuclease T [Shigella boydii ATCC 9905]
 gi|320188340|gb|EFW63002.1| Ribonuclease T [Escherichia coli O157:H7 str. EC1212]
 gi|320195450|gb|EFW70075.1| Ribonuclease T [Escherichia coli WV_060327]
 gi|320197835|gb|EFW72443.1| Ribonuclease T [Escherichia coli EC4100B]
 gi|320642007|gb|EFX11371.1| ribonuclease T [Escherichia coli O157:H7 str. G5101]
 gi|320647324|gb|EFX16132.1| ribonuclease T [Escherichia coli O157:H- str. 493-89]
 gi|320652618|gb|EFX20887.1| ribonuclease T [Escherichia coli O157:H- str. H 2687]
 gi|320653004|gb|EFX21200.1| ribonuclease T [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658687|gb|EFX26364.1| ribonuclease T [Escherichia coli O55:H7 str. USDA 5905]
 gi|323152841|gb|EFZ39111.1| ribonuclease T [Escherichia coli EPECa14]
 gi|323169213|gb|EFZ54889.1| ribonuclease T [Shigella sonnei 53G]
 gi|323169961|gb|EFZ55617.1| ribonuclease T [Escherichia coli LT-68]
 gi|323180968|gb|EFZ66506.1| ribonuclease T [Escherichia coli 1180]
 gi|323186075|gb|EFZ71431.1| ribonuclease T [Escherichia coli 1357]
 gi|323378470|gb|ADX50738.1| ribonuclease T [Escherichia coli KO11]
 gi|323948052|gb|EGB44044.1| ribonuclease T [Escherichia coli H120]
 gi|323952162|gb|EGB48035.1| ribonuclease T [Escherichia coli H252]
 gi|323956663|gb|EGB52400.1| ribonuclease T [Escherichia coli H263]
 gi|323962144|gb|EGB57739.1| ribonuclease T [Escherichia coli H489]
 gi|323968420|gb|EGB63826.1| ribonuclease T [Escherichia coli M863]
 gi|323973968|gb|EGB69140.1| ribonuclease T [Escherichia coli TA007]
 gi|323978209|gb|EGB73295.1| ribonuclease T [Escherichia coli TW10509]
 gi|324007017|gb|EGB76236.1| ribonuclease T [Escherichia coli MS 57-2]
 gi|324011423|gb|EGB80642.1| ribonuclease T [Escherichia coli MS 60-1]
 gi|324016541|gb|EGB85760.1| ribonuclease T [Escherichia coli MS 117-3]
 gi|324119138|gb|EGC13026.1| ribonuclease T [Escherichia coli E1167]
 gi|326342019|gb|EGD65800.1| Ribonuclease T [Escherichia coli O157:H7 str. 1044]
 gi|326343571|gb|EGD67333.1| Ribonuclease T [Escherichia coli O157:H7 str. 1125]
 gi|327252769|gb|EGE64423.1| ribonuclease T [Escherichia coli STEC_7v]
 gi|331049146|gb|EGI21218.1| ribonuclease T [Escherichia coli M718]
 gi|331058926|gb|EGI30903.1| ribonuclease T [Escherichia coli TA143]
 gi|331063525|gb|EGI35436.1| ribonuclease T [Escherichia coli TA271]
 gi|332101552|gb|EGJ04898.1| ribonuclease T [Shigella sp. D9]
 gi|332756966|gb|EGJ87309.1| ribonuclease T [Shigella flexneri 4343-70]
 gi|332758172|gb|EGJ88497.1| ribonuclease T [Shigella flexneri 2747-71]
 gi|332758486|gb|EGJ88807.1| ribonuclease T [Shigella flexneri K-671]
 gi|332767056|gb|EGJ97255.1| ribonuclease T [Shigella flexneri 2930-71]
 gi|333004001|gb|EGK23536.1| ribonuclease T [Shigella flexneri K-218]
 gi|333005308|gb|EGK24828.1| ribonuclease T [Shigella flexneri VA-6]
 gi|333005888|gb|EGK25404.1| ribonuclease T [Shigella flexneri K-272]
 gi|333017888|gb|EGK37193.1| ribonuclease T [Shigella flexneri K-304]
 gi|333018868|gb|EGK38161.1| ribonuclease T [Shigella flexneri K-227]
          Length = 215

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|315182194|gb|ADT89107.1| DNA polymerase III, alpha subunit [Vibrio furnissii NCTC 11218]
          Length = 184

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 46/170 (27%), Gaps = 29/170 (17%)

Query: 20  DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
           DR  +   V++    +   + +         +         TGIT          E E  
Sbjct: 3   DRAIEIGAVKL-VDGQVAGTFQQLM---NPGFRVSGFIEGYTGITNTMLRTAPRCE-EVM 57

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
                F        +  +N  FD  +    F R                      +R   
Sbjct: 58  AEFAHFI---GDTPLVAHNASFDKRFLDAEFDRIG--------------------VRYPG 94

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYATLALV 188
            F+   +        A + KL DL     IE+    H A AD   T +L 
Sbjct: 95  QFACSMLIARRLIQNAPTHKLGDLVRFKQIENDGTFHRALADSQMTASLW 144


>gi|57168588|ref|ZP_00367721.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli
           RM2228]
 gi|57020093|gb|EAL56770.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli
           RM2228]
          Length = 251

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  +   +  +   V++ +  ++I+       +  +          +TGI 
Sbjct: 70  FCIVDIESTGG-IKNGQILEIGAVKI-KNLQEIDRFSSL-VQVKE---IPENITELTGIN 123

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         ++ ++ F       I   +N+RFD  +         +         
Sbjct: 124 LDMVKDAPS----LTKVLNDFRLFLKDSIFVAHNVRFDYGFISKALNECGFGILLN---- 175

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   ++  +                  +  +KL  L    GI++ + H A  D  A 
Sbjct: 176 --RRICTIEFAQCC--------------IESPRYKLDVLKELLGIKNAH-HRALNDALAA 218

Query: 185 LALVWLI 191
             +    
Sbjct: 219 AEIFKHC 225


>gi|261339587|ref|ZP_05967445.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316]
 gi|288318408|gb|EFC57346.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316]
          Length = 216

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 63/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q     ++T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P+  LR  V E +    I +        +  +  I+  +N  FD  ++     R    
Sbjct: 80  IDPKNPLRGAVSEYDALHAIFKMVRKGMKDNDCSRAIMVAHNATFDHSFTMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      +      +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACITAGIEFDGTQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTERTAELFCEIVNR 200


>gi|218767556|ref|YP_002342068.1| oligoribonuclease [Neisseria meningitidis Z2491]
 gi|11133783|sp|Q9JW09|ORN_NEIMA RecName: Full=Oligoribonuclease
 gi|121051564|emb|CAM07862.1| putative oligoribonuclease [Neisseria meningitidis Z2491]
 gi|319409820|emb|CBY90128.1| oligoribonuclease [Neisseria meningitidis WUE 2594]
          Length = 187

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   DR  + A +  D     +  +EV+    +D+ L   D     
Sbjct: 4   KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDELLDNMDEWNTA 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G T   Q+       EAE  +++  F S         +  N+I  D  +      +  
Sbjct: 64  THGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPRRATPMCGNSIHQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|317126517|ref|YP_004100629.1| exonuclease RNase T and DNA polymerase III [Intrasporangium calvum
           DSM 43043]
 gi|315590605|gb|ADU49902.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium calvum
           DSM 43043]
          Length = 228

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 55/202 (27%), Gaps = 23/202 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST--EVFFCKPADDYLPDPEAVFITG 62
            +  D ET G D   D       V VD     I+ +      C+   D     ++  + G
Sbjct: 44  LLAVDLETTGLDPRTDHILTVGFVPVD--GLVIDLSGATQLLCRAEGDV---GQSAVVHG 98

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT       G+  A+   R+          ++ ++ +   ++ +      +         
Sbjct: 99  ITDDALAG-GLPLADVVDRVAAALR--GRVLLAHHAVIEREFLAAACERTHGVPLP---- 151

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  + +D M+               D    + +L       G+    AH A  D  
Sbjct: 152 ------MEAVDTMQLQARVLGSQ---SGADLPPGALRLGTARAHLGLPRYAAHQALTDAL 202

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           A   L      +          
Sbjct: 203 ACAELYLAQVARLSGGQPMSLK 224


>gi|209966072|ref|YP_002298987.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
 gi|209959538|gb|ACJ00175.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
          Length = 227

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 49/186 (26%), Gaps = 29/186 (15%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  +   V +         T   +  P  D     EA  + G++
Sbjct: 4   IVLDTETTGIDALNGDRVVEIGCVEL-MNHVATGRTYHQYINPERDMPI--EAFNVHGLS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         AE       F        +  +N  FD  +      R            
Sbjct: 61  TEFLSGQP-TFAEIVGPFLDFIQDS---PLVIHNATFDVGFLNAELTRLGMR-------- 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                  L   RAI        ++P          L  L     I++     H A  D  
Sbjct: 109 ------TLPAARAIDTVVLARRRFPGAPA-----SLDALCRRFEIDNSARSYHGALLDAQ 157

Query: 183 ATLALV 188
               + 
Sbjct: 158 LLAEVY 163


>gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47]
          Length = 355

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 52/177 (29%), Gaps = 29/177 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D+ET       D   Q A VRV R  E ++S   +  +P    +  P  + I GIT
Sbjct: 3   FTAIDFET--ATRRSDSACQLAAVRV-RGGEIVDS-ACWLIRPRPF-VFSPANIQIHGIT 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P     +     E    I           +  +N  FD          + +      +  
Sbjct: 58  PGMVREEPE-FGELWPEIQSTL---GDDCLIAHNASFDLGVLMACLESHDHPVPDMQYS- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                    + R  +                  F L+ L+   GI     HDA  D 
Sbjct: 113 -----CTRAIARRTW-------------PQQPRFGLKPLSDWLGIRF-RHHDALEDS 150


>gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1]
 gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1]
          Length = 355

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 52/177 (29%), Gaps = 29/177 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D+ET       D   Q A VRV R  E ++S   +  +P    +  P  + I GIT
Sbjct: 3   FTAIDFET--ATRRSDSACQLAAVRV-RGGEIVDS-ACWLIRPRPF-VFSPANIQIHGIT 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P     +     E    I           +  +N  FD          + +      +  
Sbjct: 58  PGMVREEPE-FGELWPEIQSTL---GDDCLIAHNASFDLGVLMACLESHDHPVPDMQYS- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                    + R  +                  F L+ L+   GI     HDA  D 
Sbjct: 113 -----CTRAIARRTW-------------PQQPRFGLKPLSDWLGIRF-RHHDALEDS 150


>gi|27379228|ref|NP_770757.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27352379|dbj|BAC49382.1| blr4117 [Bradyrhizobium japonicum USDA 110]
          Length = 223

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 56/195 (28%), Gaps = 19/195 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FV+ D ET G +V  D     A +++     +I ++  F      D   + EA+ I  
Sbjct: 30  DEFVVIDCETTGLNVRTDNVVAIAAIKIR--GNRILTSARFEAIVHPDSELEAEAIKIHR 87

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +         +      + +  F        +    + FD                   +
Sbjct: 88  LRRSDVEASPI----VWKVLPGFLHFIGPRPLIGYYVDFDIAMLDK-------------Y 130

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  +L +    +     +     +  +         +     I  +  HDA  D  
Sbjct: 131 ILPLVGIELPNERIEVSRLYYERKYGNAPPNTEVDLSFAAILHDLCIPPLGQHDAFNDAL 190

Query: 183 ATLALVWLIREKKPK 197
            T  +   +R+   +
Sbjct: 191 MTAMMFLQLRDLSRR 205


>gi|58584800|ref|YP_198373.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419116|gb|AAW71131.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 231

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 58/193 (30%), Gaps = 31/193 (16%)

Query: 1   MTNHF--VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M N    ++ D ET G D+    R  +   V       +I + +VF      +      +
Sbjct: 1   MENKLREIVLDTETTGLDIESGHRIIEIGCV---ELINRIPTGKVFHKYLNPERDIPYHS 57

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             I GI+ +      +    FS  + +F    +  I+  +N  FD  +      +     
Sbjct: 58  FKIHGISEEFLEDKPL----FSDVVFEFLDFISGDILIIHNAEFDIKFLNMELGKLNARL 113

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--H 175
                 + +   D L + R  +  SP                L  L     I   N   H
Sbjct: 114 I-----SSDRVLDTLPLARKKFVGSPA--------------SLSALCKRFDISLENRELH 154

Query: 176 DAKADVYATLALV 188
            A  D      + 
Sbjct: 155 GALTDAGLLAKVY 167


>gi|7272366|gb|AAA27192.2| polymerase III epsilon (editing) subunit [Salmonella enterica
          subsp. enterica serovar Typhimurium]
          Length = 132

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 12/98 (12%)

Query: 6  VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
          ++ D ET G +         +  +   V V            F      D L DPEA  +
Sbjct: 9  IVLDTETTGMNQIGAHYEGHKIIEIGAVEV-INRRLTG--NNFHVYLKPDRLVDPEAFGV 65

Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNN 98
           GI  +  L   V    F+  + +F        +  +N
Sbjct: 66 HGIADEFLLDKPV----FADVVDEFLDYXXGAELVIHN 99


>gi|325286963|ref|YP_004262753.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324322417|gb|ADY29882.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 221

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 57/202 (28%), Gaps = 22/202 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            FV+ D ET G     DR      +++ +      +S EVF  +       + E   I G
Sbjct: 35  TFVVLDTETTGFSYQEDRMLCIGALKLKNNDINIGDSFEVFIHQ----DHYNQETAEIHG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             E    +  F +     +I  ++  FD  +      R+         
Sbjct: 91  I----LKEGKTTRLEELETLKLFLAYLKNSVIVAHHAGFDVTFINMALERHSLP------ 140

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   L + +          +   +       + L +LA    I   + H A  D Y
Sbjct: 141 -------KLKNKILDTSTLYKKTLIRSNLLVKKEHYSLDELAEKFSISVKDRHTALGDAY 193

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
            T      I  K  +       
Sbjct: 194 ITAIAFLKILVKLKEKKITTLK 215


>gi|259156611|gb|ACV96554.1| exonuclease, RNase T and DNA polymerase III [Vibrio fluvialis Ind1]
          Length = 301

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 72/237 (30%), Gaps = 15/237 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G     +   +   V+V         +   +V                 +TG
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +      + +A  +  +       +  ++  +N +FD  +    F    + S+  S 
Sbjct: 113 ITDEMVQGQHIDDALVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176
              + +    +  +  Y     G  +               F L   ++AN +   +   
Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRT 226

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                +     V    +++   +       NK+  R++ + +      ++  ++   
Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283


>gi|225010791|ref|ZP_03701259.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-3C]
 gi|225004999|gb|EEG42953.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
           MS024-3C]
          Length = 204

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 22/188 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFI 60
            + F++ D ET G D   +R      V +++      +S EV+  +       + ++  I
Sbjct: 16  QSKFIVIDTETTGFDYEKERILCIGAVLLEKSQIAVKDSFEVYLTQ----DHYNSDSTPI 71

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI       +   +      +  F +      I  ++  FD        +R        
Sbjct: 72  HGI----LKEEKKEKTAEIEALKSFLTYIGNAPIIAHHTMFDVNMINKALHRQGLP---- 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     L + +          +      +    + L +LA    I   + H A  D
Sbjct: 124 ---------SLKNKLLDTVVLYKKSLLRSPLIEKKDHYSLDELADKFNISKKDRHTALGD 174

Query: 181 VYATLALV 188
            Y T  L 
Sbjct: 175 AYITALLF 182


>gi|254468292|ref|ZP_05081698.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
 gi|207087102|gb|EDZ64385.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
          Length = 219

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 53/202 (26%), Gaps = 27/202 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G D A   R  + A V       +  +   F      +   D  A  + G+T
Sbjct: 4   IFLDTETTGLDPAQGHRIIEIAAV---EMINRQVTNNQFHVYINPEREIDEAAQEVHGLT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        E+  S +   F +     I   +N  FD  +      R            
Sbjct: 61  LEFLSDKPGFES-ISEKFISFIADSELII---HNAPFDIGFLNMELGRIKK--------- 107

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
                    V+        D +             L  L    G+++     H A  D  
Sbjct: 108 --------GVVEDYAEVITDSLVMARELRPGQRNNLDALCRHYGVDNSERNLHGALLDSL 159

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
               +   +   +  L     +
Sbjct: 160 LLAEVFIGMTRGQEALEIDFNN 181


>gi|256390707|ref|YP_003112271.1| exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
 gi|256356933|gb|ACU70430.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
          Length = 295

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 38/138 (27%), Gaps = 13/138 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET GRD    R    A V  D                        EA  I GIT + 
Sbjct: 75  FDTETTGRDPKSVRIVSAALVTSDGA--------EKAFLIDPGVEIPAEATAIHGITTEY 126

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A   G         I    +      T ++ +N   +D         RN       S   
Sbjct: 127 AREHGTEPRRTLDEIADALAAELRAGTPLVVFNAP-YDLTLLEAELARNGLTPLA-SRAP 184

Query: 125 GNSRWDLLDVMRAIYAFS 142
                D L + R +  F 
Sbjct: 185 VAPVIDPLVIDRQMDKFR 202


>gi|221316927|ref|YP_002533071.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1]
 gi|221243259|gb|ACM15967.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1]
          Length = 288

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 11/115 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            ++++I D ET G  +      + A +  D     +                  ++  I 
Sbjct: 124 KDNYIILDTETTGLGLG-HEIVEIAAI--DLYGNTL-----LNTFVTPTIPIPADSTKIH 175

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           GIT          E  + + +          I+ YN        S      N   
Sbjct: 176 GITDDMVKDAPSWEETYMKLL---TISQGKTILIYNAAFDIPKISYTCEVHNIAP 227


>gi|149637346|ref|XP_001510677.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Ornithorhynchus
           anatinus]
          Length = 240

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 32/208 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47
             FV  D E  G   A  + A+ +   V          D          ++      C  
Sbjct: 8   ETFVFLDLEATGLPDASPQIAEISLFAVHRFSLEHPAWDDSGVPLLPRVLDKLT--LCM- 64

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDD 103
             +    P+A  ITG+  +    +     +    + + +F S      C++ +N   +D 
Sbjct: 65  NPEQPFTPKAAKITGLNNRSLTDNRKACFDGTVVKALREFLSRQASPICLVAHNGFAYDF 124

Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              R    R   +    ++       D L  ++ +      G +     +   S++L DL
Sbjct: 125 PLLRTELGRLDANLPENTY-----CLDTLPALKGLDKAHDHGTR----SNHGKSYRLGDL 175

Query: 164 -ALANGIEHVNAHDAKADVYATLALVWL 190
                G +   AH A+ DVY  + +   
Sbjct: 176 YRQYFGDDPKAAHSAEGDVYTLVMVFLH 203


>gi|237746008|ref|ZP_04576488.1| exonuclease [Oxalobacter formigenes HOxBLS]
 gi|229377359|gb|EEO27450.1| exonuclease [Oxalobacter formigenes HOxBLS]
          Length = 305

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 13/109 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVD-----RQWEKIESTEVFFCKPADDYLPDPEAVF 59
            V  D ET G     D   +   VR       ++   +++    +          P    
Sbjct: 56  IVFLDTETTGLSSETDVIIELGLVRASFSPSKKKLVSLDAILSAYE--DPGKPLSPFITE 113

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
           +TGIT +K     + E   +  +       N  +I  +N  FD  +   
Sbjct: 114 LTGITDEKVRGQRIDEKTVAGFLE------NAALIVAHNAAFDRPFFEK 156


>gi|261364839|ref|ZP_05977722.1| oligoribonuclease [Neisseria mucosa ATCC 25996]
 gi|288566880|gb|EFC88440.1| oligoribonuclease [Neisseria mucosa ATCC 25996]
          Length = 182

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+    D E  G D   +R  + A +  D     +  +EV+    +D+ L   D      
Sbjct: 6   NNLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDEWNTAT 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115
            G T   ++     + EAE  +++  F +         +  N+I  D  +      R   
Sbjct: 66  HGRTGLTRRVRESQLTEAEVEQKLLDFIAQWIPEKATPMCGNSIHQDRRFMVKYMPRLEA 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|297153856|gb|ADI03568.1| hypothetical protein SBI_00447 [Streptomyces bingchenggensis BCW-1]
          Length = 200

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 59/200 (29%), Gaps = 25/200 (12%)

Query: 2   TNHFVIYDYE-TF---------GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
            + FV++D E T          G    L    Q   +R+   +  +E  E       +  
Sbjct: 1   MSTFVVFDLEFTTWQGALEQDWGAPGQLREIVQIGALRLREDFSVVEEYEALVRPVVNPQ 60

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           L    A  +TGI  +   R+G   AE       F     + +   N++            
Sbjct: 61  LSSYFA-ELTGIDQETVDREGASAAEALGDFLGF-CQGQSVLSYGNDMVVLGENVGWARA 118

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R        +  NG      L++   +   +P+              +L  +        
Sbjct: 119 R------GENVKNGFLGAYFLNIRSWLNTVAPETENVNVG-------RLWQVLDLPKPAE 165

Query: 172 VNAHDAKADVYATLALVWLI 191
              H A  D Y+  A +  +
Sbjct: 166 GKEHSALFDCYSFAAAIKHL 185


>gi|238787143|ref|ZP_04630943.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641]
 gi|238724931|gb|EEQ16571.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641]
          Length = 228

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 57/200 (28%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V +    E     + T  F   P +     PEA+   G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVDPFEGANLQPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPTNPLRGAVSEYDALHAIFKAVRKGLKDQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    L  GI      A
Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 192 HSALYDTMQTAKLFCELVNR 211


>gi|167461432|ref|ZP_02326521.1| hypothetical protein Plarl_02538 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 119

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 11/100 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + ++I D ET G +         A + +D+         +F            EA  I 
Sbjct: 31  KSKYLILDTETTGIEYD-SEIVDIAIIDLDKNL-------IFASLVKPICPIPEEATMIH 82

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
           GIT +          E   ++ +  S     ++ YN    
Sbjct: 83  GITNEMVADAP-SWLEVWAQVQKLLS--GKTLLIYNADFD 119


>gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
 gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
          Length = 234

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 11/120 (9%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR  + A + +   +         +  P  D     EA  + G++
Sbjct: 5   IVLDTETTGFDPLTGDRLVEIACLEI-EDFIPTGRHFHAYIDPCRDM--PAEAEKVHGLS 61

Query: 65  PQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI---FYRNFYDSYRW 120
                     EA E       F +      I  +N  FD  +         R     +RW
Sbjct: 62  TAFLRGKPKFEAPEIVEAFLDFVAD---APIVAHNAAFDRAFVNYELGLCSRAELPDHRW 118


>gi|259156119|gb|ACV96067.1| exonuclease, RNase T and DNA polymerase III [Providencia
           alcalifaciens Ban1]
          Length = 301

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 76/237 (32%), Gaps = 15/237 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPE-AVFITG 62
           V+ D ET G     +   +   V+V      ++I S         D   P PE    +TG
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT        + +A  +  +       +  ++  +N +FD  +    F    + S+  S 
Sbjct: 113 ITDDMVRGQHIDDALVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176
              + +    +  +  Y     G  +               F L   ++AN +   +   
Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRT 226

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                +     V    +++   +       NK+  R++ + +      ++  ++   
Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283


>gi|309797899|ref|ZP_07692280.1| exonuclease [Escherichia coli MS 145-7]
 gi|308118507|gb|EFO55769.1| exonuclease [Escherichia coli MS 145-7]
          Length = 182

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 23/189 (12%)

Query: 8   YDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
            D E+ G D ++  +  + A V+ + + + +   + F  +       DP+A  + GI+ +
Sbjct: 6   VDIESTGLDFLSGHKIIEIAMVKYEIETQTM--VDSFVMRFNPRRSIDPKAQAVHGISLE 63

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
               + ++    S      +   +   I +N   FD  + R+      +           
Sbjct: 64  DLAAEPLLADHASS--VASYLSSSDIWIAHNGEAFDIPFIRHELKSYGF---------SL 112

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
               L+D + ++         W + D      +    +L    +H  AH A  D    + 
Sbjct: 113 PDIPLIDTLFSL---------WATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQ 163

Query: 187 LVWLIREKK 195
             +  R K 
Sbjct: 164 CFFKARNKY 172


>gi|229366424|gb|ACQ58192.1| Oligoribonuclease, mitochondrial precursor [Anoplopoma fimbria]
          Length = 266

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 42/160 (26%), Gaps = 14/160 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M+   V  D E  G D+  D+  + A +  D     +           ++ L        
Sbjct: 70  MSQRMVWVDLEMTGLDIEKDQIIEMACIITDSNLNILAEGPNLIINQPNELLEGMSEWCK 129

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   Q      +   +       F      P  C +  N++  D  +        
Sbjct: 130 EHHGKSGLTQAVQDSKITLEQAEYEFLSFVRQHTPPGQCPLAGNSVHADKRFLDK----- 184

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD 153
                ++ +       D+  +      + P+  +      
Sbjct: 185 --YMPQFMYHLHYRIIDVSTIKELCRRWFPEEYKMVPHKK 222


>gi|294140465|ref|YP_003556443.1| exonuclease [Shewanella violacea DSS12]
 gi|293326934|dbj|BAJ01665.1| exonuclease [Shewanella violacea DSS12]
          Length = 232

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 20/181 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + +  D E  G D   D+      + ++    K++  +    +         ++  I GI
Sbjct: 46  NLMALDLEMTGLDPNHDQILSIGIIPIEAGMLKLDRAQHKLIRVHGSV---GQSATIHGI 102

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E    I  F +     ++  ++   D  + ++   R   +       
Sbjct: 103 LDRHLQDA----IEIEDGISWFLAQTRGKVLVAHHAPLDISFLQDAISRVKGEPVTL--- 155

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L V R       +            S +L    +  G+    AHDA  D  A
Sbjct: 156 ---LAIDTLAVERRRLLRKQEV-------LQTGSLRLGACRIRYGLPIYGAHDALVDALA 205

Query: 184 T 184
            
Sbjct: 206 C 206


>gi|227519479|ref|ZP_03949528.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104]
 gi|257084298|ref|ZP_05578659.1| exonuclease [Enterococcus faecalis Fly1]
 gi|257416905|ref|ZP_05593899.1| exonuclease [Enterococcus faecalis AR01/DG]
 gi|257421652|ref|ZP_05598642.1| exonuclease [Enterococcus faecalis X98]
 gi|307288644|ref|ZP_07568625.1| exonuclease [Enterococcus faecalis TX0109]
 gi|227073091|gb|EEI11054.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104]
 gi|256992328|gb|EEU79630.1| exonuclease [Enterococcus faecalis Fly1]
 gi|257158733|gb|EEU88693.1| exonuclease [Enterococcus faecalis ARO1/DG]
 gi|257163476|gb|EEU93436.1| exonuclease [Enterococcus faecalis X98]
 gi|306500398|gb|EFM69734.1| exonuclease [Enterococcus faecalis TX0109]
 gi|315155598|gb|EFT99614.1| exonuclease [Enterococcus faecalis TX0043]
 gi|315165305|gb|EFU09322.1| exonuclease [Enterococcus faecalis TX1302]
          Length = 188

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 52/191 (27%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F  +D+ET             A V+V      ++           +         I GI
Sbjct: 13  NFYAFDFET--ASYDKHSACSIAIVKV-ENSRIVDEFYTL---IKPETPFFWRNTQIHGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        E  ++I   F  PN  ++ +N                  D Y     
Sbjct: 67  HESDVANAPK-FPEVWQQIQHCF-QPNRLVVAHNASFD------CSVLAGCLDYYGLEQP 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N    +  L  ++      P+            + KL  +     I   N HDA  D  A
Sbjct: 119 N----YLSLCTVKTSRKLFPE----------FPNHKLNTVCENLNITLNNHHDALEDSRA 164

Query: 184 TLALVWLIREK 194
              ++    ++
Sbjct: 165 CAEILLQQEQR 175


>gi|119946100|ref|YP_943780.1| ribonuclease T [Psychromonas ingrahamii 37]
 gi|119864704|gb|ABM04181.1| RNAse T [Psychromonas ingrahamii 37]
          Length = 207

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 60/208 (28%), Gaps = 26/208 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +   +D Q          F   P +    DP+A+  TG
Sbjct: 15  VIIDIETSGLNAQTDAILEIAAILPAMDSQGYLFAAEKIHFNVLPFEGANLDPKALAFTG 74

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 75  IDPFNPLRAAVDERDALTEIFKLVRKHQKQNLCNRSIIVAHNATFDQGFINKATERCNLK 134

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          +  ++      +    Q     D                    AH 
Sbjct: 135 RMPFHPFVSFDTASMAGLILGQTVLAKACQQASIPYDNK-----------------QAHS 177

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204
           A  D   T  L + +  K   L  +   
Sbjct: 178 ALYDTEVTADLFFYMVNKLKALGGWPLA 205


>gi|302188448|ref|ZP_07265121.1| exonuclease [Pseudomonas syringae pv. syringae 642]
          Length = 237

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 25/194 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G ++  D+      V ++     +    E    +      P   AV I G+ 
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P  A+  G    E      +F    ++ I+G++   FD +        +     +  + +
Sbjct: 101 PS-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHPFFD 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +L                           L D     G+     H A AD   T
Sbjct: 157 AAEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEERHHASADALVT 199

Query: 185 LALVWLIREKKPKL 198
             L  ++     + 
Sbjct: 200 AELALILFSHARRQ 213


>gi|126734401|ref|ZP_01750148.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2]
 gi|126717267|gb|EBA14131.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2]
          Length = 241

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 54/217 (24%), Gaps = 40/217 (18%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G +    DR  +   V +            +            EA  + GI 
Sbjct: 4   IVLDTETTGFEPHEGDRIVEIGAVEL-MGHVPTGR--TYHQYINPQRSMPAEAFGVHGIG 60

Query: 65  PQKAL--RDGVV----------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           P      +D               + ++    F        +  +N  FD  +       
Sbjct: 61  PDLLEPPQDPKPGQETLRDKPLFKDVAQDFVDFVGDAK---LVIHNAAFDMKFLNAELGW 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                            D L + R  +  SP                L  L     I++ 
Sbjct: 118 LNRPLLPMDQA-----LDTLAIARRKFPGSPA--------------SLDALCRRFAIDNS 158

Query: 173 NA--HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
           +   H A  D      +   +   +   F    D R+
Sbjct: 159 SRTLHGALLDSEILAEVYLELIGGRQPDFALAADTRS 195


>gi|323163498|gb|EFZ49324.1| ribonuclease T [Escherichia coli E128010]
          Length = 215

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERVSLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|269962464|ref|ZP_06176813.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi 1DA3]
 gi|269832760|gb|EEZ86870.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi 1DA3]
          Length = 210

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 49/194 (25%), Gaps = 20/194 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET   D         A  ++            F  +       D  +V I  I 
Sbjct: 30  FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKP--FEVRLRAPQSLDSGSVKIHHIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q  +  G+ E E   ++  F    N  ++GY+                 +       + 
Sbjct: 88  HQDLVD-GISEKEALIKLLDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLPNPLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+                   +      L  +     +   + HDA  D  + 
Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLDAICKHLELPIQDKHDALQDAKSA 189

Query: 185 LALVWLIREKKPKL 198
             +   + +     
Sbjct: 190 ALVYVRLTKGDLPN 203


>gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 231

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 29/223 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  +   V       +I + +VF      +      +  I GI+
Sbjct: 8   IVLDTETTGLDTESGHRIIEIGCV---ELINRIPTGKVFHRYLNPERDIPYHSFKIHGIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  ++ +     F S     I+  +N  FD  +      +           +
Sbjct: 65  EEFLEDKPL-FSDVALEFLDFISN---DILVIHNAEFDVKFLNMELSKLNARLI-----S 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +A SP                L  L     I   N   H A  D  
Sbjct: 116 SDRVLDTLPLARKKFAGSPA--------------SLNALCKRFDISLENRELHGALVDAQ 161

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
               +   +              ++ N       ++N+TP  H
Sbjct: 162 LLAKVYVELTGGLQTFLFDNECNQDSNSTFVQHKVRNLTPREH 204


>gi|330938574|gb|EGH42148.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 237

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     +            D+   P AV I G+ P
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E      +F    ++ I+G++   FD +        +     + ++ + 
Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHAFFDT 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +L                           L D     G+     H A AD   T 
Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEERHHASADALVTA 200

Query: 186 ALVWLIREKKPKL 198
            L  ++     + 
Sbjct: 201 ELALILFSHARRQ 213


>gi|226939937|ref|YP_002795010.1| DNA polymerase III subunit epsilon [Laribacter hongkongensis HLHK9]
 gi|226714863|gb|ACO74001.1| Probable DNA polymerase III [Laribacter hongkongensis HLHK9]
          Length = 202

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 20/191 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET   +V          VR+ R    + S E  +     ++LP P +V + G+ P  
Sbjct: 32  LDCETTSLNVREAELLSIGAVRIRR-GRILAS-ESLYLLVRPEHLPAPGSVVVHGLRPSD 89

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
               G+  A+   R+  F       ++GY         ++ +         +   +    
Sbjct: 90  LSD-GLAPADAVSRLLDFI--GGRALVGYYLEYDVAVLNKYVKPLTGITLPQRQIEVSGL 146

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
            +D                +     DG    +L+++     +  +  HDA  D      +
Sbjct: 147 YYD---------------WRLKQTPDGYVDLRLEEILKTLDLPRMGRHDALTDAVTAGMI 191

Query: 188 VWLIREKKPKL 198
           +  +R +    
Sbjct: 192 LLAMRARGHHD 202


>gi|150005552|ref|YP_001300296.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides
           vulgatus ATCC 8482]
 gi|254884534|ref|ZP_05257244.1| exonuclease [Bacteroides sp. 4_3_47FAA]
 gi|294778642|ref|ZP_06744064.1| exonuclease [Bacteroides vulgatus PC510]
 gi|319640774|ref|ZP_07995487.1| exonuclease/DNA polymerase III epsilon c [Bacteroides sp. 3_1_40A]
 gi|149933976|gb|ABR40674.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides
           vulgatus ATCC 8482]
 gi|254837327|gb|EET17636.1| exonuclease [Bacteroides sp. 4_3_47FAA]
 gi|294447591|gb|EFG16169.1| exonuclease [Bacteroides vulgatus PC510]
 gi|317387586|gb|EFV68452.1| exonuclease/DNA polymerase III epsilon c [Bacteroides sp. 3_1_40A]
          Length = 162

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 57/190 (30%), Gaps = 29/190 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            ++F   D+ET   +           V V R  E  +        P  DY        I 
Sbjct: 1   MDNFAAIDFET--ANNERTSICSVGVVIV-RNGEIADRFYSL-VHPEPDYYLY-WNTRIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +      V  +E  +++           +  +N  FD+   + +F     D     
Sbjct: 56  GLTQEDTAHAPV-FSEVWKQVAPKIE---GLPLVAHNKAFDEGCLKAVFRTYCMD----- 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +D     +A                G  + +L  +A   G E  N H A AD 
Sbjct: 107 ----YPDYDFYCTYQASRKL-----------KGLRNHQLHTVAGFFGFELENHHHALADA 151

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 152 EACAWIARQI 161


>gi|82543982|ref|YP_407929.1| ribonuclease T [Shigella boydii Sb227]
 gi|194434706|ref|ZP_03066959.1| ribonuclease T [Shigella dysenteriae 1012]
 gi|123559690|sp|Q321A7|RNT_SHIBS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|81245393|gb|ABB66101.1| RNase T [Shigella boydii Sb227]
 gi|194417044|gb|EDX33160.1| ribonuclease T [Shigella dysenteriae 1012]
 gi|320186326|gb|EFW61062.1| Ribonuclease T [Shigella flexneri CDC 796-83]
 gi|332093985|gb|EGI99038.1| ribonuclease T [Shigella dysenteriae 155-74]
 gi|332096070|gb|EGJ01075.1| ribonuclease T [Shigella boydii 3594-74]
          Length = 215

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMIAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|307546031|ref|YP_003898510.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307218055|emb|CBV43325.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
          Length = 240

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 46/195 (23%), Gaps = 18/195 (9%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G D           V        +      +           E+V    IT 
Sbjct: 51  VALDMETTGLDARRHAIVSIGVVPFTLGRIALRE--RRYWIVRPQRTLHAESVTFHHITH 108

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
               +      E    + +  +     ++ +               R F D    +    
Sbjct: 109 TDIEQAPE-FGEILGDLLEVLA--GRLVVVH----------YRHIERLFLDDSVKARLGE 155

Query: 126 NSRWDLLDVMRAIYAFSPDGI---QWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
              + ++D M     F                  S +L D     G+     H A  D  
Sbjct: 156 GLMFPMIDTMAVEARFHRQSWLARFKRWIGRPPASIRLYDSRTRYGLPLYQGHHALTDAL 215

Query: 183 ATLALVWLIREKKPK 197
           AT  L+        +
Sbjct: 216 ATAELLQAQIANHYQ 230


>gi|19069923|emb|CAC38117.2| polymerase epsilon subunit like protein [Providencia rettgeri]
 gi|19882268|gb|AAM01212.1| putative 3'-5'exonuclease [IncJ plasmid R391]
 gi|20095154|gb|AAM08020.1| hypothetical protein [Providencia rettgeri]
 gi|262318129|dbj|BAI48455.1| hypothetical protein [Proteus mirabilis]
          Length = 302

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 73/237 (30%), Gaps = 15/237 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G     +   +   V+V         +   +V                 +TG
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +      + +A  +  +       +  ++  +N +FD  +    F    + S+  S 
Sbjct: 113 ITDEMVQGQRIDDALVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176
              + +    +  +  Y     G  +               F+L   ++AN +   +   
Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFQLLPESVANLLSEADRRT 226

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                +     V    +++   +       NK+  R++ + +      ++  ++   
Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283


>gi|120597914|ref|YP_962488.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
 gi|120558007|gb|ABM23934.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
          Length = 301

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 75/237 (31%), Gaps = 15/237 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPE-AVFITG 62
           V+ D ET G     +   +   V+V      ++I S         D   P PE    +TG
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT        + ++  +  +       +  ++  +N +FD  +    F    + S+  S 
Sbjct: 113 ITDDMVQGQHIDDSLVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL------ANGIEHVNAHD 176
              + +    +  +  Y     G  +         F +  L        AN +   +   
Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCFAMAWLFHLLPESVANLLSEADRRT 226

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                +     V    +++   +       NK+  R++ + +      ++  ++   
Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283


>gi|170724006|ref|YP_001751694.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
 gi|169762009|gb|ACA75325.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
          Length = 236

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 61/193 (31%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +   D+      V ++     I+ ++ F             +V I G+ P
Sbjct: 42  VVLDLETSGLNPNRDQVLSIGAVAIEDGA--IDFSQQFERTLHRPAQKTNASVLIHGLGP 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             AL  G   AE    + +F    ++ ++ ++       + + +  R   ++        
Sbjct: 100 S-ALAAGSDPAEALLELLEFI--GDSPVLAFH-----APFDQRMLARALKETLGHRLQLP 151

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L  M        +               L D     G++    H A AD   T 
Sbjct: 152 FLDVAELAPMLNPDTVLREAG-------------LDDWVARFGLQVDERHHASADAQVTA 198

Query: 186 ALVWLIREKKPKL 198
            L  ++  +  + 
Sbjct: 199 ELALILFSQARRQ 211


>gi|15640327|ref|NP_229954.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|153822831|ref|ZP_01975498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|153827159|ref|ZP_01979826.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-2]
 gi|153831076|ref|ZP_01983743.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|227080513|ref|YP_002809064.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|229524741|ref|ZP_04414146.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|9654711|gb|AAF93473.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126519649|gb|EAZ76872.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|148873443|gb|EDL71578.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|149738956|gb|EDM53274.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-2]
 gi|227008401|gb|ACP04613.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|227012158|gb|ACP08368.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229338322|gb|EEO03339.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
          Length = 223

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 22/196 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63
           +V  D ET   D         A  ++           EV  C P      D  +V I  I
Sbjct: 44  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQS---LDSGSVRIHRI 100

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q     G+ E E   ++ +F    N  ++GY+                 +       +
Sbjct: 101 RHQDLHD-GLSEKEALLQLIEFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIE 157

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+                   +      L+ +     +   + HDA  D  A
Sbjct: 158 VSQIYHDKLEK---------------HLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIA 202

Query: 184 TLALVWLIREKKPKLF 199
              +   + +     F
Sbjct: 203 AALVFVRLTKGDLPQF 218


>gi|71065393|ref|YP_264120.1| bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit
           [Psychrobacter arcticus 273-4]
 gi|71038378|gb|AAZ18686.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Psychrobacter arcticus 273-4]
          Length = 527

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 14/118 (11%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           +I D ET G D    DR  +   V      E I                   D E + I 
Sbjct: 304 LIMDTETTGLDPLKGDRIIEVGIV------EMIGRKFTGEKLHVYINPQRGMDEEVIRIH 357

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           GI+            + ++ ++ F    +   I  +N  FD  +    F +     + 
Sbjct: 358 GISEAFLTDKP-TFDQVAQSLYDFM---DGAEIIAHNASFDMNFLNMEFAKVGMHDFA 411


>gi|93005683|ref|YP_580120.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
           K5]
 gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
           K5]
          Length = 532

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 14/118 (11%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
           +I D ET G D    DR  +   V      E I                   D E + I 
Sbjct: 309 LIMDTETTGLDPQKGDRVIEVGIV------EMIGRKFTGEKLHVYINPQRGMDEEVIRIH 362

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           GI+            + ++ ++ F    +   I  +N  FD  +    F +     + 
Sbjct: 363 GISEAFLTDKP-TFDQVAQSLYDFM---DGAEIIAHNASFDMNFLNMEFAKVGMHDFA 416


>gi|307720332|ref|YP_003891472.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978425|gb|ADN08460.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
          Length = 247

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 76/236 (32%), Gaps = 26/236 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   +VI D ET G +   DR  Q   + +    ++IE    F      D      A+ +
Sbjct: 1   MAKQYVILDTETTGTN-EEDRVIQLGYMVL--GAKEIEVHNEFCST---DVAIKFGAMEV 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GITP             + +     +     +I +N         +             
Sbjct: 55  HGITPDLLEGKPPCVETVAYKRLLELNTSENYLIIHNAPFDITMLEKEG----------- 103

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            +       D L V + +            R         +  A A GI    AHDA  D
Sbjct: 104 -FKTQMKVIDTLRVAKHVMPDEEAHRLQYFRYKMELYKDEEKEAKALGIVV-KAHDAIGD 161

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
           V      +  +++     F       N+N + K++D+ N TP++  +  FG  +  
Sbjct: 162 VLVLKLFLSKLKDIVQAQFP------NENPVEKMVDLTN-TPILVKTFRFGKHKGK 210


>gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
 gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
          Length = 296

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 28/105 (26%), Gaps = 9/105 (8%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70
           ET G   A DR    A V                        P P  V I G+T ++   
Sbjct: 2   ETTGLWPARDRVLSVAVVLTAPDGAVQGRWSTL---LDPGCDPGP--VHIHGLTRERLAG 56

Query: 71  DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
                A     + +  +     ++  +N  FD         R   
Sbjct: 57  SP-TFAAVVDELSELLA---GRVLVAHNAAFDWRMLAGEALRIGR 97


>gi|254286229|ref|ZP_04961188.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
 gi|150423644|gb|EDN15586.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
          Length = 209

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 22/196 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63
           +V  D ET   D         A  ++           EV  C P      D  +V I  I
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQS---LDSGSVRIHRI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q     G+ E E   ++ +F    N  ++GY+                 +       +
Sbjct: 87  RHQDLHD-GLSEKEALLQLIEFI--GNRPLVGYHIHYDKTILDIACRKHLGFPLPNRLIE 143

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+                   +      L+ +     +   + HDA  D  A
Sbjct: 144 VSQIYHDKLEK---------------HLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIA 188

Query: 184 TLALVWLIREKKPKLF 199
              +   + +     F
Sbjct: 189 AALVFVRLTKGDLPQF 204


>gi|316972225|gb|EFV55912.1| three prime repair exonuclease 1 [Trichinella spiralis]
          Length = 361

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 44/158 (27%), Gaps = 29/158 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP---------------- 47
             V  D ET G         + A V V R+         F   P                
Sbjct: 13  TLVFLDVETTGLVGKQPSITEIAVVAVGRR-----HFLTFSNNPSAYTKLPRVMSKLVSV 67

Query: 48  -ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDY 104
                   P A  ITG+ P          AEF + +H F         +I +N ++FD  
Sbjct: 68  INPAKSISPTASLITGLNPANVAAQP-TFAEFYQTLHSFLLNLIQPVTLIAHNGLQFDFP 126

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
             +    R        ++       D L + R +    
Sbjct: 127 ILKTEMARCGNPDLPATF----FCCDSLKLFRLMDNLL 160


>gi|224124082|ref|XP_002330100.1| predicted protein [Populus trichocarpa]
 gi|222871234|gb|EEF08365.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 79/261 (30%), Gaps = 33/261 (12%)

Query: 1   MTNH--FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPD 54
           M N      +D ET        +     +F  + V  ++ E+I S      +P++  L  
Sbjct: 1   MENKTEIAFFDVETT-VPTRPGQGYAILEFGAILVCPQKLEEIRSYSTL-VRPSNPKLIS 58

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             +V   GI P+  +      A+ +  ++           G+N +RFD      +  R  
Sbjct: 59  SLSVRCNGIIPEAVVSAP-SFADIADTVYDIL--HGRIWAGHNIVRFD-----CVRIREA 110

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           +     +        D L ++                   A + K+  LA   G+ +   
Sbjct: 111 FAEIGRAAPEPKGTIDSLALL------------TQKFGRRAGNMKMASLATYFGLGN-QT 157

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR--KLIDIQNMTPLVHVSGMFGA 232
           H +  DV   + ++                +         +    +   P+  +     A
Sbjct: 158 HRSLDDVRMNVEVLKHCATVLFLNSPSSSSHVKSTPALSPENDRTEEKRPVFSLLTSNTA 217

Query: 233 SRSNTALIAPVAWHPRYKDSV 253
               +  +A    HP   D V
Sbjct: 218 EAQYS--VASNTAHPDTFDMV 236


>gi|241759454|ref|ZP_04757558.1| oligoribonuclease Orn [Neisseria flavescens SK114]
 gi|241320236|gb|EER56569.1| oligoribonuclease Orn [Neisseria flavescens SK114]
          Length = 185

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+    D E  G +   DR  + A +  D     +  ++V+    +D+ L   D      
Sbjct: 6   NNLCWLDMEMTGLNPEHDRIIEVAMIITDSNLNVLAQSDVYVIHQSDELLNGMDEWNTTT 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115
            G T   Q+     + EAE  + +  F S         +  N+I  D  +      R   
Sbjct: 66  HGRTGLTQRVRESKLTEAEVEQNLLGFMSAWIPEKSTPMCGNSIHQDRRFMVKYMPRLEA 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|225025590|ref|ZP_03714782.1| hypothetical protein EIKCOROL_02492 [Eikenella corrodens ATCC
           23834]
 gi|224941628|gb|EEG22837.1| hypothetical protein EIKCOROL_02492 [Eikenella corrodens ATCC
           23834]
          Length = 238

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 9/125 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI--- 60
           +    D E  G +   DR  + A V  D     +  +E +    +D+ L   +A      
Sbjct: 53  NLCWLDMEMTGLNPEHDRIIEAAVVITDADLNILAQSESYAIHQSDELLEGMDAWNTSTH 112

Query: 61  --TGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
             TG+T Q+     + EAE  +R+  F +      T  +  N +  D  + +    +   
Sbjct: 113 ERTGLT-QRVKDSTLSEAEVEQRLLDFIAQWIPQGTSPLCGNTVHQDRRFMQRYMPKLEA 171

Query: 116 DSYRW 120
             +  
Sbjct: 172 WFHYR 176


>gi|330985867|gb|EGH83970.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 237

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 58/194 (29%), Gaps = 25/194 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G ++  D+      V ++     +    E    +      P   AV I G+ 
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P  A+  G   AE      +F       I+G++   FD +        +     R  + +
Sbjct: 101 PS-AIAAGCEPAEALLDFMEFVGESP--ILGFHAP-FDQHMLSRALKESLDYRLRHPFFD 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +L                           L D     G+     H+A AD   T
Sbjct: 157 AAEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVT 199

Query: 185 LALVWLIREKKPKL 198
             L  ++     + 
Sbjct: 200 AELALILFSHARRQ 213


>gi|300704711|ref|YP_003746314.1| oligoribonuclease [Ralstonia solanacearum CFBP2957]
 gi|299072375|emb|CBJ43713.1| oligoribonuclease [Ralstonia solanacearum CFBP2957]
          Length = 219

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60
           N+ V  D E  G     DR  + A V  D +   +    V      D+ L   +A     
Sbjct: 28  NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDEILDGMDAWNKGT 87

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    K       EA+    +  F       +   +  N+I  D  +      +   
Sbjct: 88  HGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEA 147

Query: 116 DSYRW 120
             +  
Sbjct: 148 YFHYR 152


>gi|332090790|gb|EGI95882.1| ribonuclease T [Shigella boydii 5216-82]
          Length = 215

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTTALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|251789330|ref|YP_003004051.1| ribonuclease T [Dickeya zeae Ech1591]
 gi|247537951|gb|ACT06572.1| ribonuclease T [Dickeya zeae Ech1591]
          Length = 226

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 26/208 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D     + ++T  F  +P +  +  PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDATLHFHIEPFEGAILRPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEYEALHEIFKSVRKGIKEQDCNRAIIVAHNATFDHSFLMAAAERCGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +A     +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------IAADIPFDASQAHS 182

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204
           A  D   T  L   +  +  ++  +   
Sbjct: 183 ALYDTERTAQLFCELVNRWKRMGGWPLA 210


>gi|58042842|ref|NP_932728.2| hypothetical protein CFDNVgORF119 [Choristoneura fumiferana DEF
           MNPV]
 gi|58013200|gb|AAQ91735.2| unknown [Choristoneura fumiferana DEF MNPV]
          Length = 230

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 58/203 (28%), Gaps = 16/203 (7%)

Query: 3   NHFVIYDYETFGRDV---ALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPE 56
           N +   D ET G         +  + +   V R+ E + +                   +
Sbjct: 5   NTYAFLDLETTGLPKLQNNQTQITELSLQCVTRK-ELLGAARVCNKLTLCFEPTVDVSEQ 63

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           A  +T +  +        +      I  F +   P  C++ YN   FD          N 
Sbjct: 64  ASALTQLNAENLRGQPQFDKRTVALIESFLALLSPPVCLVAYNGFAFDFPILYKHLKDNG 123

Query: 115 Y-------DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
           +       D+Y   +   +               +     W        S+KL DL   +
Sbjct: 124 FAGAVHCSDAYHALFAILDGSGPPTMKRSKSGTVTVKLCPWQRGARPKQSYKLIDLYKRH 183

Query: 168 GIEHVNAHDAKADVYATLALVWL 190
              +V  H A+ D    + LV  
Sbjct: 184 VGGNVEGHRAEDDCAMMMRLVQK 206


>gi|34497823|ref|NP_902038.1| oligoribonuclease [Chromobacterium violaceum ATCC 12472]
 gi|41017434|sp|Q7NVH5|ORN_CHRVO RecName: Full=Oligoribonuclease
 gi|34103679|gb|AAQ60040.1| oligoribonuclease protein [Chromobacterium violaceum ATCC 12472]
          Length = 181

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
           TN+ +  D E  G +   DR  + A +  D     +  + V      D  L   D     
Sbjct: 5   TNNLIWLDMEMTGLNPDQDRIIEVAMIVTDSNLNVLAESPVLVIHQPDAILDGMDDWNKN 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   +K     V EAE  + + +F           +  N I  D  +      +  
Sbjct: 65  THGKSGLIEKVKNSTVSEAEAEQLLLEFMMQHVPERATPMCGNTIHQDRRFMARWMPKLE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 AYFHYR 130


>gi|288939927|ref|YP_003442167.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum
           DSM 180]
 gi|288895299|gb|ADC61135.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum
           DSM 180]
          Length = 225

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 52/200 (26%), Gaps = 19/200 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++  D ET G D   D       V +     +I+ +         D      +  I  IT
Sbjct: 41  YLAIDLETTGLDQRQDLILSVGYVVL--HGPEIDLSTARHHLVRIDRSIPEASAVIHQIT 98

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +A   G    +    +    +     ++  ++   +  +      R       W    
Sbjct: 99  DDQAA-TGRELEDVLGEVLAALT---GRVMIAHHAGIEQGFLSQACQRC------WGRGL 148

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D   +           ++       A+  +L  L     +    AH+A +D  + 
Sbjct: 149 PLRLVDTQTLAHR-------TLERRQIPFKASDLRLHALTSRYNLPRHGAHNALSDALSA 201

Query: 185 LALVWLIREKKPKLFEYLYD 204
             L       +         
Sbjct: 202 AELFLAQAAYRDDGRRLRLS 221


>gi|110805628|ref|YP_689148.1| ribonuclease T [Shigella flexneri 5 str. 8401]
 gi|123147001|sp|Q0T4C2|RNT_SHIF8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|110615176|gb|ABF03843.1| RNase T [Shigella flexneri 5 str. 8401]
          Length = 215

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAVSEYEALHEICKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|149190662|ref|ZP_01868930.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
 gi|148835545|gb|EDL52514.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
          Length = 176

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 53/192 (27%), Gaps = 20/192 (10%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET   D ++      A  ++            F  + +       ++V I  IT  + 
Sbjct: 2   DCETTSLDPSVAEIVTIAATKIIDNRIITSDP--FEVRLSAPKSLGEDSVKIHHITHDEL 59

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
            + G+ E +    +  F    N  ++GY+         R       +       +     
Sbjct: 60  -KHGISEKQAMSALLNFI--GNRPLVGYHIRYDKKILDRAAKKHLGFPLPNELIEVSQIY 116

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            D L  +     F                  L+ +     I + + HDA  D  A   + 
Sbjct: 117 NDKLLKLLPNGYF---------------DLSLEAICRHLQIPNYHKHDALEDAKAAAMVY 161

Query: 189 WLIREKKPKLFE 200
             +       F 
Sbjct: 162 LKLTRGSLPPFR 173


>gi|224023901|ref|ZP_03642267.1| hypothetical protein BACCOPRO_00618 [Bacteroides coprophilus DSM
           18228]
 gi|224017123|gb|EEF75135.1| hypothetical protein BACCOPRO_00618 [Bacteroides coprophilus DSM
           18228]
          Length = 163

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 28/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V    E +++       P  +Y        + 
Sbjct: 1   MKDFAAIDFET--ANNQRSSVCSVGIVVVRND-EIVDTFYSLI-NPEPNY-YSYWCSQVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +      V   +  ++I       +   +  +N  FD+   + +F     D   + 
Sbjct: 56  GLTREDTENAPV-FPDVWKQIEPLI---DGLPLVAHNRPFDESCLKAVFRVYQMDYPDYE 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      +D L V R ++ +               + +L  +A A G    N H A AD 
Sbjct: 112 F------YDTLCVSRKVFPYL-------------PNHQLHTVAAACGYHLENHHHALADA 152

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 153 EACAWIAREI 162


>gi|157145913|ref|YP_001453232.1| ribonuclease T [Citrobacter koseri ATCC BAA-895]
 gi|166228562|sp|A8AH33|RNT_CITK8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|157083118|gb|ABV12796.1| hypothetical protein CKO_01664 [Citrobacter koseri ATCC BAA-895]
          Length = 215

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      LA     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGTQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTERTAVLFCEIVNR 200


>gi|121591065|ref|ZP_01678378.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121729644|ref|ZP_01682121.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|147675462|ref|YP_001218570.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153803140|ref|ZP_01957726.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|153819596|ref|ZP_01972263.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|229506903|ref|ZP_04396411.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229509276|ref|ZP_04398759.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229512692|ref|ZP_04402160.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229516220|ref|ZP_04405668.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229520981|ref|ZP_04410402.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229527205|ref|ZP_04416598.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229606416|ref|YP_002877064.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254851434|ref|ZP_05240784.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|255744098|ref|ZP_05418052.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262161990|ref|ZP_06031007.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262167979|ref|ZP_06035678.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262192561|ref|ZP_06050711.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|298500931|ref|ZP_07010733.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|121547098|gb|EAX57233.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121628578|gb|EAX61057.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|124121331|gb|EAY40074.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|126509852|gb|EAZ72446.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|146317345|gb|ABQ21884.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229335213|gb|EEO00697.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229341866|gb|EEO06867.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229346646|gb|EEO11616.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229350202|gb|EEO15154.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229353591|gb|EEO18528.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229356008|gb|EEO20927.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229369071|gb|ACQ59494.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254847139|gb|EET25553.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|255738363|gb|EET93754.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262023512|gb|EEY42214.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262028368|gb|EEY47024.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262031606|gb|EEY50194.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297540435|gb|EFH76494.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|327483170|gb|AEA77577.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 209

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 22/196 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63
           +V  D ET   D         A  ++           EV  C P      D  +V I  I
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQS---LDSGSVRIHRI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q     G+ E E   ++ +F    N  ++GY+                 +       +
Sbjct: 87  RHQDLHD-GLSEKEALLQLIEFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIE 143

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+                   +      L+ +     +   + HDA  D  A
Sbjct: 144 VSQIYHDKLEK---------------HLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIA 188

Query: 184 TLALVWLIREKKPKLF 199
              +   + +     F
Sbjct: 189 AALVFVRLTKGDLPQF 204


>gi|237710481|ref|ZP_04540962.1| exonuclease [Bacteroides sp. 9_1_42FAA]
 gi|237726988|ref|ZP_04557469.1| exonuclease [Bacteroides sp. D4]
 gi|265756507|ref|ZP_06090713.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229433844|gb|EEO43921.1| exonuclease [Bacteroides dorei 5_1_36/D4]
 gi|229455203|gb|EEO60924.1| exonuclease [Bacteroides sp. 9_1_42FAA]
 gi|263233695|gb|EEZ19310.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 162

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 57/190 (30%), Gaps = 29/190 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            ++F   D+ET   +           V V R  E  +        P  DY        I 
Sbjct: 1   MDNFAAIDFET--ANNERTSICSVGVVIV-RNGEIADRFYSL-VHPEPDYYLY-WNTRIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +      V  +E  +++           +  +N  FD+   + +F     D     
Sbjct: 56  GLTQEDTAHAPV-FSEVWKQVAPKIE---GLPLVAHNKAFDERCLKAVFRTYCMD----- 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +D     +A                G  + +L  +A   G E  N H A AD 
Sbjct: 107 ----YPDYDFYCTYQASRKL-----------KGLRNHQLHTVAGFFGFELENHHHALADA 151

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 152 EACAWIARQI 161


>gi|209693722|ref|YP_002261650.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
 gi|208007673|emb|CAQ77784.1| putative exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 238

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET G D   +       V    +  +   ++ +F K  D    +  +V I GIT
Sbjct: 48  FVALDFETTGLDANQNSIISIGLVPFTLERIRCRESQHWFVKAQDSL--EENSVVIHGIT 105

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +  R + +        ++  +  + +         R+F+D    +   
Sbjct: 106 HSDLQGAP----DLRRILEKVLDALAGKVVVVHYRKIE---------RDFFDINLRNLIG 152

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQ---WPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               + ++D M+    F  +  +      +     S +L +     G+     H A  D 
Sbjct: 153 EGIVFPIVDTMQIEGDFQQEQAKGLINWIKGKRPESIRLANSRSRYGLPAYAPHHALTDA 212

Query: 182 YATLALVWLIREKK 195
            AT  L        
Sbjct: 213 IATAELFQAQIRYH 226


>gi|58696733|ref|ZP_00372277.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698126|ref|ZP_00373049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629990|ref|YP_002726781.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
 gi|58535372|gb|EAL59448.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58537085|gb|EAL60207.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225591971|gb|ACN94990.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
          Length = 231

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 29/223 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  +   V       +I + +VF      +      +  I GI+
Sbjct: 8   LVLDTETTGLDTESGHRIIEIGCV---ELINRIPTGKVFHRYLNPERDIPYHSFKIHGIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  ++ +     F S     I+  +N  FD  +      +           +
Sbjct: 65  EEFLEDKPL-FSDVALEFLDFISN---DILVIHNAEFDVKFLNMELSKLNAGLI-----S 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +A SP                L  L     I   N   H A  D  
Sbjct: 116 SDRVLDTLPLARKKFAGSPA--------------SLNALCKRFDISLENRELHGALVDAQ 161

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
               +   +              ++ N       ++N+TP  H
Sbjct: 162 LLAKVYVELTGGLQTFLFDNECNQDSNSTFVQHKVRNLTPREH 204


>gi|206889195|ref|YP_002247891.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741133|gb|ACI20190.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 225

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 65/216 (30%), Gaps = 21/216 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV+ D E  G D   D       + +  +   I   ++F+        P  +AV I  
Sbjct: 18  KEFVVIDTELTGLDEKNDSIISIGAITMRERSILIG--DIFYRILNPQCKPKDKAVLIHK 75

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T  +  +      +    + +F        I  + I  D  + R    +         W
Sbjct: 76  LTSTELEQCP----DIKLILKEFIDFIKNRPIVGHFIEIDIKFLRKETSK---------W 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N     + +D             +         +  L ++A A  I+    HDA  D +
Sbjct: 123 LNTGFTPEAIDTYIIFNWL---IEREIISKKFKGAKSLPEIAEAFDIKVDMLHDALYDAF 179

Query: 183 ATLALVWL---IREKKPKLFEYLYDYRNKNQLRKLI 215
            T  +      + +K    +  L     K  +   +
Sbjct: 180 ITAQIFQREIIMVQKINASWFDLLKKIGKPTVSGYM 215


>gi|330836252|ref|YP_004410893.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
 gi|329748155|gb|AEC01511.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
          Length = 231

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 28/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET   +   +         +D   + I++              DP  + I GIT
Sbjct: 26  FVALDFET--ANGTHESACSLGLALMDGTGKLIDTWYQLIK--PPSSFFDPANIEIHGIT 81

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          +      +F +     ++  +N  FD    + + +    +        
Sbjct: 82  PENVADAP-SFDKVWSAAREFIADR---LVIAHNATFDMTILKAMLHWYKMEI------- 130

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R      +R      P+             +KL  L+   G ++  AH A  D    
Sbjct: 131 --PRIGYACTLRLSRKVWPEMNN----------YKLTTLSEVFGFDY-RAHYALDDAVNC 177

Query: 185 LALV 188
             L 
Sbjct: 178 AKLF 181


>gi|254293981|ref|YP_003060004.1| exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
           49814]
 gi|254042512|gb|ACT59307.1| Exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
           49814]
          Length = 298

 Score = 67.9 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 44/220 (20%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQ--------WEKIESTEVFFCKPADDYLPDPEAVF 59
            D ET G D       + A V  +           + ++  +              E   
Sbjct: 45  IDTETTGLDYREAELIEIALVPFEYSTEGKLVTFGKALDQFQQ------PKSPISEEITK 98

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT +      +        + Q     +  +I  +N  FD  ++             
Sbjct: 99  LTGITNEMVAGQKID----IPAVEQLIKESD--LIIAHNAAFDRPFAER----------- 141

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                       L        ++   +    +++G  S KL  LA+ +G  +  AH A  
Sbjct: 142 ------------LTPAFKAKPWACSLVDIDWKEEGYESPKLSFLAMEHGFYY-KAHRADI 188

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           D +AT+ L+    +              + +  ++     
Sbjct: 189 DCWATIKLLAQRLKTSGDRAMAHLLTSAREERWRIWATNT 228


>gi|282856350|ref|ZP_06265629.1| putative DNA polymerase III PolC-type (PolIII) [Pyramidobacter
           piscolens W5455]
 gi|282585721|gb|EFB91010.1| putative DNA polymerase III PolC-type (PolIII) [Pyramidobacter
           piscolens W5455]
          Length = 351

 Score = 67.9 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 24/193 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V+ D E+ G   A   P + + VR     + +++      +P    +       +TGIT
Sbjct: 15  YVVLDVESQG--YARFCPIEISAVRFAPDGQCLDAYSSL-VRPRVARV-SRYVSDLTGIT 70

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                R  +   E    +  F    ++ I+G+     D     +     ++      +  
Sbjct: 71  TDMVRRAPLP-REVIGSLRDFI--GDSVIVGHAVAENDLPIIDHFCQELYHARLENLY-- 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +D      A  P          G   + L+ LA    I+    H A+AD   T
Sbjct: 126 -------VDTFYWAQALFPAL--------GTGHYNLKALAEHFVIDAQTFHRAEADCRTT 170

Query: 185 LALVWLIREKKPK 197
             L  ++ +   +
Sbjct: 171 ARLYQILHDAAQR 183


>gi|83815933|ref|YP_446416.1| DNA helicase II [Salinibacter ruber DSM 13855]
 gi|83757327|gb|ABC45440.1| DNA helicase II [Salinibacter ruber DSM 13855]
          Length = 1084

 Score = 67.9 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 22/219 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63
           +V+ D E    D    R A+   ++V R    ++        P D    + E +  + G+
Sbjct: 689 YVMVDLEATSTDPRHCRVAEIGALKV-RDGTVVDRFSELVQLPEDLTADERETLRTVCGL 747

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P     +   EA        F       ++ +N  R+D    R +   +  D++  +  
Sbjct: 748 DPASDFDEARPEAAVWADFCAFVD--GAPLVAHNGQRYDFRVLRRLANTHEADAHWAT-- 803

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    D++ A +   PD  ++ +                   +   AH A AD   
Sbjct: 804 -------TYDLLPAAHELFPDLRRYDAAHLRE---------TLLDDDADTAHRALADCED 847

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
              ++  ++E++ +    L        L   +  ++  P
Sbjct: 848 QQRILARMQEERARRRRRLAHEPLLPLLVAALTYESPAP 886


>gi|313681812|ref|YP_004059550.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154672|gb|ADR33350.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 232

 Score = 67.9 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 49/188 (26%), Gaps = 27/188 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G + A DR      +  D    ++                 P +  I  IT 
Sbjct: 2   IFLDTETTGLE-AKDRICALGMITEDEAHYEL---------INPGKKIPPSSSAIHHITN 51

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +            S    +  + P T ++ +N     D   +                  
Sbjct: 52  EMVKDAPAFAESLSAEKLKLLNTPETILVSHNAPFELDMLQKEGLAWQGR---------- 101

Query: 126 NSRWDLLDVMRAIYAFSPDG--IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                ++D ++   +   D               ++ +          +  H A +D   
Sbjct: 102 -----IIDTLKCSKSLMDDLEGYALQFLRYELRLYREEANVFKEHEIPIVPHHALSDALH 156

Query: 184 TLALVWLI 191
           T  ++  +
Sbjct: 157 TKMVLEYL 164


>gi|312960549|ref|ZP_07775055.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311285075|gb|EFQ63650.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 105

 Score = 67.9 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 6  VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
          V+ D ET G  V    R  +   V +            F      D   D  A+ + GIT
Sbjct: 6  VVLDTETTGMPVTDGHRIIEIGCVEL-MGRRLTGRH--FHVYLQPDRDSDEGAIGVHGIT 62

Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIG 95
           +         AE +    +F +      I 
Sbjct: 63 DEFLKGKPR-FAEVADEFFEFINGAQLSFIT 92


>gi|257090922|ref|ZP_05585283.1| exonuclease [Enterococcus faecalis CH188]
 gi|312902561|ref|ZP_07761767.1| exonuclease [Enterococcus faecalis TX0635]
 gi|256999734|gb|EEU86254.1| exonuclease [Enterococcus faecalis CH188]
 gi|310634231|gb|EFQ17514.1| exonuclease [Enterococcus faecalis TX0635]
 gi|315168719|gb|EFU12736.1| exonuclease [Enterococcus faecalis TX1341]
 gi|315579629|gb|EFU91820.1| exonuclease [Enterococcus faecalis TX0630]
          Length = 188

 Score = 67.9 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F  +D+ET             A V+V    + ++           +         I GI
Sbjct: 13  NFYAFDFET--ASYDKHSACSIAIVKV-ENSQIVDEFYTL---IKPETPFFWRNTQIHGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                +       E  ++I   F  PN  ++ +N                  D Y     
Sbjct: 67  HESDVVNAPK-FPEVWQQIQHCF-QPNRLVVAHNASFD------CSVLAGCLDYYGLEQP 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N    +  L  ++      P+            + KL  +     I   N HDA  D  A
Sbjct: 119 N----YLSLCTVKTSRKLFPE----------FPNHKLNTVCENLNITLNNHHDALEDSRA 164

Query: 184 TLALVWLIREK 194
              ++    ++
Sbjct: 165 CAEILLQQEQR 175


>gi|297561085|ref|YP_003680059.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296845533|gb|ADH67553.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 335

 Score = 67.9 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 45/176 (25%), Gaps = 26/176 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  +   D+ET   +           VRV R    ++        P          + +
Sbjct: 1   MSRTWTAIDFET--ANHDRGSACAVGLVRV-RDGAVVDRYTTLIRPPRQVDFFSRHNIAV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT            +   RI +F    +   +  +N  FD    R            W
Sbjct: 58  HGITAADVADAP-SWEQAHARIVEF---ADGGPLVAHNAAFDMGVLRQACGHTGLSHPAW 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
            +         L + R  +              G    KL  +    G    + H 
Sbjct: 114 EYA------CTLALSRRTW-------------SGLPDHKLPTVCAHIGHRVTHHHR 150


>gi|66047927|ref|YP_237768.1| exonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|63258634|gb|AAY39730.1| Exonuclease [Pseudomonas syringae pv. syringae B728a]
          Length = 237

 Score = 67.9 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     +            D+   P AV I G+ P
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E      +F    ++ I+G++   FD +        +     + ++ + 
Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHAFFDA 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +L                           L D     G+     H A AD   T 
Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEQRHHASADALVTA 200

Query: 186 ALVWLIREKKPKL 198
            L  ++     + 
Sbjct: 201 ELALILFSHARRQ 213


>gi|212693424|ref|ZP_03301552.1| hypothetical protein BACDOR_02940 [Bacteroides dorei DSM 17855]
 gi|212664068|gb|EEB24642.1| hypothetical protein BACDOR_02940 [Bacteroides dorei DSM 17855]
          Length = 162

 Score = 67.9 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 57/190 (30%), Gaps = 29/190 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            ++F   D+ET   +           V V R  E  +        P  DY        I 
Sbjct: 1   MDNFAAIDFET--ANNERTSICSVGVVIV-RNGEIADRFYSL-VHPEPDYYLY-WNTRIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +      V  +E  +++           +  +N  FD+   + +F     D     
Sbjct: 56  GLTQEDTAHAPV-FSEVWKQVAPKIE---GLPLVAHNKAFDERCLKTVFRTYCMD----- 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +D     +A                G  + +L  +A   G E  N H A AD 
Sbjct: 107 ----YPDYDFYCTYQASRKL-----------KGLRNHQLHTVAGFFGFELENHHHALADA 151

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 152 EACAWIARQI 161


>gi|322389907|ref|ZP_08063447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321143343|gb|EFX38781.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 836

 Score = 67.9 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 33/195 (16%)

Query: 2   TNHFVIYDYETF--GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
              + I D E    G +    +  Q   V +       +S E            D     
Sbjct: 24  KRKYAIVDLEATSAGSNA---KIIQVGIVII-EDGRIRQSYET---DVNPHERLDEHIKQ 76

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TG+T  +  +      EF++   + F +    +   +N++FD        +   ++   
Sbjct: 77  LTGLTDARLKKAP----EFAQVAKEIFELIEDAVFVAHNVKFDANLLAEALFWEGFE--- 129

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                   R D +++ +  Y                  + L  LA    IE  +AH A A
Sbjct: 130 ----LTTPRIDTVELSQIFYPTLE-------------RYNLGALAAELEIELHHAHSALA 172

Query: 180 DVYATLALVWLIREK 194
           D  AT  L+  +REK
Sbjct: 173 DAMATAQLLLKLREK 187


>gi|170016856|ref|YP_001727775.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20]
 gi|169803713|gb|ACA82331.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20]
          Length = 177

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 54/207 (26%), Gaps = 31/207 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET   +         A   V    + ++           +         I GI
Sbjct: 2   NFTALDFET--ANHEKHSAVSIALAVVRDN-QVVDEFYSL---IKPETYFSARNTAIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T     +      E    I   F+     ++  +N  FD+   +                
Sbjct: 56  TAADVAQAPK-FPEIWDMIAPLFTEDK--LVVAHNAAFDNGILK---------------- 96

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D  D+    Y                 + KL  +A   GI   + H+A  D   
Sbjct: 97  ---GTLDYYDIAEPHYMLLDTVRSSRQLFPDFKNHKLNTVAQNLGITLDHHHNALDDA-- 151

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQ 210
            +A   ++  +             KN+
Sbjct: 152 -VAAANILIYEADHFGVESLKRFVKNK 177


>gi|118602424|ref|YP_903639.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567363|gb|ABL02168.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 222

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 61/235 (25%), Gaps = 33/235 (14%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEA 57
               ++ D ET G + +   R  +          E ++       +  +   P     ++
Sbjct: 1   MERLIVLDTETTGIEPSEGHRIIEIGCT------EIVDRQITENNEYHEYIQPSRNVGDS 54

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           V I GIT +           F   +  F +      +  +N  FD  +  +       D 
Sbjct: 55  VRIHGITDKFLTNKPK----FKAIVKTFLTYIEGATLIIHNAPFDLGFLNHELKLIGIDE 110

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAH 175
                 +  +  D L++ +     +                 L  L             H
Sbjct: 111 RIE---DKCNIIDSLELSKQQRPGTL--------------HNLDALCRRFEINSSARTVH 153

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
            A  D      +   +   +  LF        +     +I ++     + V    
Sbjct: 154 GALLDAKILAQVYLAMTGGQSTLFNNEQTINEQANTNNIIRVERAIGKIKVVYAN 208


>gi|297581761|ref|ZP_06943683.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534168|gb|EFH73007.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 209

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 22/196 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63
           +V  D ET   D         A  ++           EV  C P      D  +V I  I
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQS---LDSGSVRIHRI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q     G+ E E   ++ +F    N  ++GY+                 +       +
Sbjct: 87  RHQDLHD-GLSEKEALIQLIEFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIE 143

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+                   +      L+ +     +   + HDA  D  A
Sbjct: 144 VSQIYHDKLEK---------------HLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIA 188

Query: 184 TLALVWLIREKKPKLF 199
              +   + +     F
Sbjct: 189 AALVFVRLTKGDLPQF 204


>gi|190571471|ref|YP_001975829.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018874|ref|ZP_03334682.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357743|emb|CAQ55194.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995825|gb|EEB56465.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 234

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 8/105 (7%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D     R  +   V       +I + + F      +      +  I GI+
Sbjct: 8   IVLDTETTGLDTKSGHRIIEIGCV---ELINRIPTGKTFHRYLNPERDIPYHSFKIHGIS 64

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
            +      +  ++ +     F S     I+  +N  FD  +    
Sbjct: 65  EEFLEDKPL-FSDVALEFLDFISN---DILVIHNAEFDVKFLNME 105


>gi|330970909|gb|EGH70975.1| exonuclease [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 237

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     +            D+   P AV I G+ P
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E      +F    ++ I+G++   FD +        +     + ++ + 
Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHAFFDA 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +L                           L D     G+     H A AD   T 
Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEQRHHASADALVTA 200

Query: 186 ALVWLIREKKPKL 198
            L  ++     + 
Sbjct: 201 ELALILFSHARRQ 213


>gi|260424856|ref|ZP_05779017.1| DNA polymerase III PolC-type [Dialister invisus DSM 15470]
 gi|260403394|gb|EEW96941.1| DNA polymerase III PolC-type [Dialister invisus DSM 15470]
          Length = 196

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 46/188 (24%), Gaps = 26/188 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + + D ET G         + A + V    E  ++              +     +TGI
Sbjct: 30  TYTVMDIETTGM---YSDITEIAALCV-VSGEIRDTFHTLVKAKGP---IEKRVERLTGI 82

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            +       F        +  + +  D                   + 
Sbjct: 83  TSDMLEEQP-PIDDVLPIFMTFIE---GFPLVGHGLDSDLIVIDRNLKAVGKPLVTNDYI 138

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           + +S   LL                P R+     + ++ LA    +     H A  D  A
Sbjct: 139 DTHSLAKLL---------------LPEREGEHRKYSVKALAEYYELPCSTFHRAMDDCMA 183

Query: 184 TLALVWLI 191
              L   +
Sbjct: 184 EKMLFERL 191


>gi|237802391|ref|ZP_04590852.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025248|gb|EGI05304.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 237

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 25/193 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G +++ D+      V ++     +    E    +      P   AV I G+ 
Sbjct: 44  VVLDLETSGLNMSRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P  A+  G    E    +  F    ++ ++G++       + +++  R   +S  +   +
Sbjct: 101 PS-AIAAGSEPVEALLDLMAFI--GDSPVLGFH-----APFDQHMLSRALKESLGYRLQH 152

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  M    A                   L D     G++    H A AD   T
Sbjct: 153 PFFDIAELAPMLCEQA-------------NLRHAGLDDWTRFFGLQAEERHHASADALVT 199

Query: 185 LALVWLIREKKPK 197
             L  ++     +
Sbjct: 200 AELALILFSHARR 212


>gi|289674377|ref|ZP_06495267.1| exonuclease [Pseudomonas syringae pv. syringae FF5]
          Length = 237

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     +            D+   P AV I G+ P
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E      +F    ++ I+G++   FD +        +     + ++ + 
Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHAFFDV 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +L                           L D     G+     H A AD   T 
Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEQRHHASADALVTA 200

Query: 186 ALVWLIREKKPKL 198
            L  ++     + 
Sbjct: 201 ELALILFSHARRQ 213


>gi|238926233|ref|ZP_04657993.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
 gi|238885913|gb|EEQ49551.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
          Length = 179

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 27/194 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +++D ET G     D     A   V+   E +  +     + A+     P+A  I 
Sbjct: 1   MEKILVFDTETTGFRSD-DEVLTLA--VVNGTGETMVDSMYAPVRKAEW----PDAERIN 53

Query: 62  GITPQKALRDG--VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            I+P         +   E    +   F+ P+T ++GYN        +++          R
Sbjct: 54  RISPAMVADCDPILTHRE---ELECLFNAPDTLLVGYNIEFDIRLLAQSG--------IR 102

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            +  N +         R +      G +W    + A  ++              AH A A
Sbjct: 103 ITNANRHDVMLAFSAFRKVPDARRGGYRWWKLTECAEYYR-------YDWGTTVAHGALA 155

Query: 180 DVYATLALVWLIRE 193
           D  ATL     + E
Sbjct: 156 DTLATLFCYRKMSE 169


>gi|229544880|ref|ZP_04433605.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322]
 gi|256616762|ref|ZP_05473608.1| exonuclease [Enterococcus faecalis ATCC 4200]
 gi|256854034|ref|ZP_05559399.1| exonuclease [Enterococcus faecalis T8]
 gi|256963842|ref|ZP_05568013.1| exonuclease [Enterococcus faecalis HIP11704]
 gi|257081701|ref|ZP_05576062.1| exonuclease [Enterococcus faecalis E1Sol]
 gi|257420127|ref|ZP_05597121.1| exonuclease [Enterococcus faecalis T11]
 gi|307271788|ref|ZP_07553059.1| exonuclease [Enterococcus faecalis TX0855]
 gi|307278717|ref|ZP_07559784.1| exonuclease [Enterococcus faecalis TX0860]
 gi|307290260|ref|ZP_07570176.1| exonuclease [Enterococcus faecalis TX0411]
 gi|312900097|ref|ZP_07759413.1| exonuclease [Enterococcus faecalis TX0470]
 gi|229309981|gb|EEN75968.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322]
 gi|256596289|gb|EEU15465.1| exonuclease [Enterococcus faecalis ATCC 4200]
 gi|256710977|gb|EEU26020.1| exonuclease [Enterococcus faecalis T8]
 gi|256954338|gb|EEU70970.1| exonuclease [Enterococcus faecalis HIP11704]
 gi|256989731|gb|EEU77033.1| exonuclease [Enterococcus faecalis E1Sol]
 gi|257161955|gb|EEU91915.1| exonuclease [Enterococcus faecalis T11]
 gi|306498681|gb|EFM68182.1| exonuclease [Enterococcus faecalis TX0411]
 gi|306504578|gb|EFM73781.1| exonuclease [Enterococcus faecalis TX0860]
 gi|306511666|gb|EFM80665.1| exonuclease [Enterococcus faecalis TX0855]
 gi|311292732|gb|EFQ71288.1| exonuclease [Enterococcus faecalis TX0470]
 gi|315030443|gb|EFT42375.1| exonuclease [Enterococcus faecalis TX4000]
 gi|315032587|gb|EFT44519.1| exonuclease [Enterococcus faecalis TX0017]
 gi|315143870|gb|EFT87886.1| exonuclease [Enterococcus faecalis TX2141]
 gi|315148698|gb|EFT92714.1| exonuclease [Enterococcus faecalis TX4244]
 gi|315151771|gb|EFT95787.1| exonuclease [Enterococcus faecalis TX0012]
 gi|315170466|gb|EFU14483.1| exonuclease [Enterococcus faecalis TX1342]
 gi|315174930|gb|EFU18947.1| exonuclease [Enterococcus faecalis TX1346]
 gi|327535953|gb|AEA94787.1| exonuclease [Enterococcus faecalis OG1RF]
          Length = 188

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 53/191 (27%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F  +D+ET             A V+V      ++           +         I GI
Sbjct: 13  NFYAFDFET--ASYDKHSACSIAIVKV-ENSRIVDEFYTL---IKPETPFFWRNTQIHGI 66

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                +       E  ++I   F  PN  ++ +N                  D Y     
Sbjct: 67  HESDVVNAPK-FPEVWQQIQHCF-QPNRLVVAHNASFD------CSVLAGCLDYYGLEQP 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N    +  L  ++      P+            + KL  +     I   N HDA  D  A
Sbjct: 119 N----YLSLCTVKTSRKLFPE----------FPNHKLNTVCENLNITLNNHHDALEDSRA 164

Query: 184 TLALVWLIREK 194
              ++    ++
Sbjct: 165 CAEILLQQEQR 175


>gi|78044638|ref|YP_360855.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996753|gb|ABB15652.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 222

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 49/210 (23%), Gaps = 31/210 (14%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + + D ET G      D       V++            F                +TG
Sbjct: 37  TYTVIDLETTGLKPFQGDEIIAIGAVKI-INGNIT-RP-AFHAYVNPQREIPEVVQRLTG 93

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+P+       +       +          +I  +++ FD  +                 
Sbjct: 94  ISPKTVQNAPPLTN----TLTTLLDFARNSVIVGHSVNFDLAFLNKHLSS------LTGK 143

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D +D+                      ++ L++ A    I     H A  D  
Sbjct: 144 KLTPRLLDTVDLGI-------------YLFPREPNYSLENFAQKFAISLQGRHTALGDAV 190

Query: 183 ATLALV----WLIREKKPKLFEYLYDYRNK 208
               +      ++  K    +  L     K
Sbjct: 191 ICAKVFLNFLKILELKNINTWWQLSQEIYK 220


>gi|62390175|ref|YP_225577.1| DNA polymerase III, epsilon subunit [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325511|emb|CAF19991.1| DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 197

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 51/196 (26%), Gaps = 20/196 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62
             +  D ET G      +      V +    + I+ +   +            +   I  
Sbjct: 14  KLLAVDVETTGLKPHRHQIVSIGWVPI--NGDVIDLSGAGYVVIRGSEGFSVGSSAVIHQ 71

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T  +    G+   E   ++ Q         +  +    +  +      ++F        
Sbjct: 72  LTDDEIA-AGIDIKEALGQLLQALQ---GRAMLAHFSPIERDFISAACLKHF-------- 119

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   L+D              +P  +D     +L  +    G+ + + H A  D  
Sbjct: 120 -GTLLDVPLVDTFAMERRHMERMSTYPRGED----LRLARIRQRYGLPNYSNHQALTDAL 174

Query: 183 ATLALVWLIREKKPKL 198
           A   +  +        
Sbjct: 175 ACAEVYLVQITHLRAN 190


>gi|19552509|ref|NP_600511.1| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC
           13032]
 gi|21324057|dbj|BAB98682.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Corynebacterium glutamicum ATCC 13032]
          Length = 218

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 51/196 (26%), Gaps = 20/196 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62
             +  D ET G      +      V +    + I+ +   +            +   I  
Sbjct: 35  KLLAVDVETTGLKPHRHQIVSIGWVPI--NGDVIDLSGAGYVVIRGSEGFSVGSSAVIHQ 92

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T  +    G+   E   ++ Q         +  +    +  +      ++F        
Sbjct: 93  LTDDEIA-AGIDIKEALGQLLQALQ---GRAMLAHFSPIERDFISAACLKHF-------- 140

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   L+D              +P  +D     +L  +    G+ + + H A  D  
Sbjct: 141 -GTLLDVPLVDTFAMERRHMERMSTYPRGED----LRLARIRQRYGLPNYSNHQALTDAL 195

Query: 183 ATLALVWLIREKKPKL 198
           A   +  +        
Sbjct: 196 ACAEVYLVQITHLRAN 211


>gi|46446795|ref|YP_008160.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400436|emb|CAF23885.1| putative DNA polymerase III, epsilon chain, mutD [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 216

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 63/211 (29%), Gaps = 27/211 (12%)

Query: 23  AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82
            + A         +    E F       +   PE+  I  IT +     G   A+     
Sbjct: 2   IEIAAY----DPVQNRRFEKF---VHPGFPIPPESTAIHHITDEMVANAG-SFADVGAEF 53

Query: 83  HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
            +F +     +I +NN  FD ++ R+ F RN             + W  LD ++    + 
Sbjct: 54  VEFCA-GEVVLIAHNNDNFDLHFLRHEFERN--------QLILPTHWKFLDSLKWARRYR 104

Query: 143 PDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
            D               LQ L    GI   NAH A  DV     +   + +       + 
Sbjct: 105 SDL----------PRHTLQFLREIYGITANNAHRALDDVIVLERVFRSMVDDLEIQDVFD 154

Query: 203 YDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
              R +             PL  +   + + 
Sbjct: 155 LLNRPRAIQHMPFGKHQGQPLNKIPKNYISW 185


>gi|300858320|ref|YP_003783303.1| hypothetical protein cpfrc_00902 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685774|gb|ADK28696.1| hypothetical protein cpfrc_00902 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206036|gb|ADL10378.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis C231]
 gi|302330589|gb|ADL20783.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276273|gb|ADO26172.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 203

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 22/194 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAV 58
              F+  D ET        +      V ++    ++       +       D + +  A+
Sbjct: 28  KTRFLAVDMETTALLPTKGKILSIGWVPIEDGRVQLADAGHVFIRSENLEHDSVGNSAAL 87

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
               IT      +G  E      +    S     ++  +    +  +      R+F    
Sbjct: 88  --HNITDTMLA-EGESEHSAMEML---LSSLRGRVLLAHFAPIELRFGDAACRRHFGAPL 141

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    R   +D M            +P  +D     +L  +    G+ H  +H+A 
Sbjct: 142 ---------RVPYVDTMELERRHMERMGTYPRGED----LRLARVRKRYGLPHYRSHNAL 188

Query: 179 ADVYATLALVWLIR 192
            D  A   L   + 
Sbjct: 189 TDALACAELYLALN 202


>gi|289664483|ref|ZP_06486064.1| exonuclease, RNase T and DNA polymerase III [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 322

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 46/185 (24%), Gaps = 38/185 (20%)

Query: 6   VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G +    D   + A V  +     +       C   +     PEA  I GI+
Sbjct: 51  IFVDTETTGLNQDGRDEVLEIAIV--NADGTIL--LNTLVCPARNTAW--PEAQAIHGIS 104

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ         +    +I    +     ++ YN      ++                   
Sbjct: 105 PQDVAGAP-SWSGLLPKIASICA--GKTVVFYNAPFDTSFF------------------- 142

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYA 183
                                         +   KL D A  +G     A H A  D  A
Sbjct: 143 --------PTRFFPNVECAMRSYSEVNPGHSGWVKLSDAASESGYTSTGAFHRALEDALA 194

Query: 184 TLALV 188
              + 
Sbjct: 195 CRHIW 199


>gi|218548753|ref|YP_002382544.1| ribonuclease T [Escherichia fergusonii ATCC 35469]
 gi|218356294|emb|CAQ88912.1| ribonuclease T (RNase T) [Escherichia fergusonii ATCC 35469]
 gi|324113426|gb|EGC07401.1| ribonuclease T [Escherichia fergusonii B253]
 gi|325497162|gb|EGC95021.1| ribonuclease T [Escherichia fergusonii ECD227]
          Length = 215

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDNTLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E +    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPQRGAVREYDALHAIFKMVRKGIKDTGCNRAIMVAHNATFDHGFLMAAANRASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T       A     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACTAAGMAFDSTQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTEQTAMLFCEIVNR 200


>gi|197286329|ref|YP_002152201.1| plasmid-related exonuclease [Proteus mirabilis HI4320]
 gi|194683816|emb|CAR44904.1| putative plasmid-related exonuclease [Proteus mirabilis HI4320]
          Length = 301

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 75/237 (31%), Gaps = 15/237 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPE-AVFITG 62
           V+ D ET G     +   +   V+V      ++I S         D   P PE    +TG
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIIDLISLYEDPGKPIPELITELTG 112

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT        + ++  +  +       +  ++  +N +FD  +  N F    + S+  S 
Sbjct: 113 ITDDMVQGQHIDDSLVASWL------SDDPLVVAHNAQFDRPFFENRFAALGHLSWACSA 166

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL------ANGIEHVNAHD 176
              + +    +  +  Y     G  +           +  L        AN +   +   
Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFYLLPESVANLLSEADRRT 226

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                +     V    +++   +       NK+  R++ + +      ++  ++   
Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283


>gi|146328835|ref|YP_001209227.1| ribonuclease T [Dichelobacter nodosus VCS1703A]
 gi|146232305|gb|ABQ13283.1| ribonuclease T [Dichelobacter nodosus VCS1703A]
          Length = 206

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 63/198 (31%), Gaps = 28/198 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD----RQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           V+ D ET G D   D   + A V V+         +E+   +  KP +    +P+++ I 
Sbjct: 15  VVVDVETGGFDHEKDALLEVAAVLVNFNEAGNLAPVETFH-YHVKPFEGAHLNPDSLKIN 73

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           GI P   LR  + E   ++++                I+  +N  FD  +   +  R  Y
Sbjct: 74  GIDPFHPLRPALDEVTVAKQLFGAIREYQKAQSCTRSILVGHNAHFDLGFINALAARCNY 133

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                   N    +  LD +          +                 A     +   AH
Sbjct: 134 ------QHNPFHPFSSLDTVSLGALAYGQTVLARIAK-----------AAGFEYDSERAH 176

Query: 176 DAKADVYATLALVWLIRE 193
            AK D   T  +   I  
Sbjct: 177 GAKYDTELTAQIFCHIIN 194


>gi|254850923|ref|ZP_05240273.1| exonuclease family [Vibrio cholerae MO10]
 gi|21885332|gb|AAL59738.1| unknown [Vibrio cholerae]
 gi|254846628|gb|EET25042.1| exonuclease family [Vibrio cholerae MO10]
 gi|259156302|gb|ACV96248.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind4]
          Length = 302

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 71/237 (29%), Gaps = 15/237 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G     +   +   V+V         +   +V                 +TG
Sbjct: 53  VLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT        + ++  +  +       +  ++  +N +FD  +    F    + S+  S 
Sbjct: 113 ITDDMVQGQHIDDSLVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176
              + +    +  +  Y     G  +               F L   ++AN +   +   
Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRA 226

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                +     V    +++   +       NK+  R++ + +      ++  ++   
Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283


>gi|330965486|gb|EGH65746.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 237

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 25/194 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G ++  D+      V ++     +    E    +      P   AV I G+ 
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P  A+  G    E      +F       I+G++   FD +        +     + ++ +
Sbjct: 101 PS-AIAAGSEPVEALLDFMEFVGESP--ILGFHAP-FDQHMLGRALKESLDYRLQHAFFD 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +L                           L D     G+     H+A AD   T
Sbjct: 157 AAEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVT 199

Query: 185 LALVWLIREKKPKL 198
             L  ++     + 
Sbjct: 200 AELALILFSHARRQ 213


>gi|312140266|ref|YP_004007602.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
 gi|311889605|emb|CBH48922.1| putative DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
          Length = 228

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 23/178 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D ET GRD    R    + V V  +  +                   +A  + GI+
Sbjct: 9   ICAFDLETTGRDPLSARIVTGSVVTVGGEGHR-----SRNWIVDPGVEIPVDAAAVHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
             +A   G   A   R I      +     ++   N  +D         R  +       
Sbjct: 64  TAQARERGQDYASGYREIRSALTDAWAAGHVVVAFNAAYDLTVLDAEGRRLGWPP----- 118

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      ++   Y    +  +     D      L  L    G+    AH+A++D
Sbjct: 119 ------LSGYGLVVDPYVIDREMDR-----DRRGKRTLSALCEHYGVVLAAAHEAESD 165


>gi|300717064|ref|YP_003741867.1| exodeoxyribonuclease X [Erwinia billingiae Eb661]
 gi|299062900|emb|CAX60020.1| Exodeoxyribonuclease X [Erwinia billingiae Eb661]
          Length = 221

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 51/200 (25%), Gaps = 40/200 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G         + A V V    + +       C    D    P A+ I  IT  
Sbjct: 4   VIDTETCGL---QGGIVEVASVDV-IDGKIVNPMSDLIC---PDRPISPHAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E    R          +     +N  FD         R         W    
Sbjct: 57  MVADKPPIEHAIGR-------YHGSPYYVAHNASFD---------RRMLPEMHGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R +         WP       + +            ++AH A  D Y T  
Sbjct: 97  --ICTMTLARGL---------WPGIKYSNQALRETLKLEVTPPADLHAHRALYDCYVTA- 144

Query: 187 LVWLIREKKPKLFEYLYDYR 206
              LIR      ++     R
Sbjct: 145 -ALLIRIMDYSGWDAAEMIR 163


>gi|85711670|ref|ZP_01042727.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145]
 gi|85694530|gb|EAQ32471.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145]
          Length = 244

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 61/194 (31%), Gaps = 17/194 (8%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET G D   +     A V +  Q   +     +  KP  D     E+V I GIT 
Sbjct: 55  VAVDFETTGLDCQRNSIVSIAVVPMSAQRIFMSQARQWVVKPRQDL--TDESVVIHGITH 112

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                   +EA     +    +      + + N     +  + +  R           N 
Sbjct: 113 SDIQSAPDIEA-ILPELLDLVA--GKIWVVHYNGIERPFLQKAMDAR----------FNE 159

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT--SFKLQDLALANGIEHVNAHDAKADVYA 183
           +  + ++D M     F      + SR  G    S +L D      +     HDA  D  A
Sbjct: 160 HIHFPVIDTMAIEARFHRQRRSFWSRLMGKRPLSIRLADSRERYNLPFYAPHDALTDALA 219

Query: 184 TLALVWLIREKKPK 197
              L+      +  
Sbjct: 220 CAELLQAQIRHRYS 233


>gi|172051553|emb|CAQ34948.1| hypothetical protein [Photobacterium damselae subsp. piscicida]
          Length = 302

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 75/238 (31%), Gaps = 15/238 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPE-AVFIT 61
            V+ D ET G     +   +   V+V      ++I S         D   P PE    +T
Sbjct: 52  LVLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELT 111

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT        + +   +  +       +  ++  +N +FD  +    F    + S+  S
Sbjct: 112 GITDDMVQGQHIDDLLVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACS 165

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAH 175
               + +    +  +  Y     G  +               F L   ++AN +   +  
Sbjct: 166 ASGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRR 225

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                 +     V    +++   +       NK+  R++ + +      ++  ++   
Sbjct: 226 TVLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283


>gi|227873963|ref|ZP_03992179.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268]
 gi|227840171|gb|EEJ50585.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268]
          Length = 178

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 30/208 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+++D ET   +   +R +    + V  + +  +           +   D   V +T
Sbjct: 1   MARFIVFDVET--PNRKNNRISAIG-ITVVEEGKISKEFYSL---VNPETNFDYFNVKLT 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+            E  ++I   FS     ++  +N  FD         +N    Y   
Sbjct: 55  GISKASVKDAP-TFPELWQQIEPLFSDG---MLVAHNASFDMNVL-----KNCLLDYEID 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W                YA     ++         S KL  +    GI     H A +D 
Sbjct: 106 WK--------------PYARYLCTVKMGRSLFPDRSHKLNMVCEDFGISL-QHHRADSDS 150

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN 209
           +A   ++    E   ++ +++     K 
Sbjct: 151 HACAEILLRYLEAGAEVKDFIRTCSFKK 178


>gi|167470221|ref|ZP_02334925.1| DNA polymerase III, epsilon subunit [Yersinia pestis FV-1]
          Length = 143

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 35/121 (28%), Gaps = 12/121 (9%)

Query: 6   VIYDYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   V V            F        L DPEA  +
Sbjct: 9   ILLDTETTGMNKLGVHYEGHRIIEIGTVAV-INLPLTGR--NFHVYVKPARLVDPEAYGV 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +         A+ +     F        +  +N  FD  +    F     D  + 
Sbjct: 66  HGISDEFLADKP-TFADITPEFLDFIRGGE---LVIHNAAFDIGFKDYEFRMLQQDIPKT 121

Query: 121 S 121
            
Sbjct: 122 E 122


>gi|331015013|gb|EGH95069.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 222

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     +            D+   P AV I G+ P
Sbjct: 29  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKLSP-AVLIHGLAP 86

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E      +F    ++ I+G++   FD +        +     + ++ + 
Sbjct: 87  S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLARALKESLDYRLQHAFFDA 142

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +L                           L D     G+     H+A AD   T 
Sbjct: 143 AEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVTA 185

Query: 186 ALVWLIREKKPKL 198
            L  ++     + 
Sbjct: 186 ELALILFSHARRQ 198


>gi|21220034|ref|NP_625813.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|256788866|ref|ZP_05527297.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289772754|ref|ZP_06532132.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6822230|emb|CAB70936.1| putative DNA polymerase III [Streptomyces coelicolor A3(2)]
 gi|289702953|gb|EFD70382.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 241

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 42/166 (25%), Gaps = 18/166 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D   DR    A V  D          V              A  + G+T + 
Sbjct: 12  FDTETTGVDTETDRIVSAALVVQDAPG---LRPRVTRWLVNPGVPVPESATAVHGLTEEY 68

Query: 68  ALRDGVVEAEFSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             R G   A     + +     +     ++  N   FD         R+           
Sbjct: 69  VQRHGRWPAPVMYEMAEALTEQARAGRPLVVMNAP-FDLTLLDRELRRH----------- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
             S          ++   P  +             L DL    G+E
Sbjct: 117 RASSLGRWLERTPLHVLDPHVLDKHLDRYRKGRRTLTDLCAHYGVE 162


>gi|333030485|ref|ZP_08458546.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332741082|gb|EGJ71564.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 164

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 45/175 (25%), Gaps = 28/175 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            ++FV  D+ET   +           V V +  E ++          + Y        + 
Sbjct: 1   MDNFVAIDFET--ANANRSSICSVGIVIV-KNGEVVDRFYQLIRPIPNFYTY--WNTRVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T            E    I           +  +N  FD+   +              
Sbjct: 56  GLTDYDTAMAPR-FPEVWSSIAPKLQ---GLPLVAHNSAFDESCLKKA------------ 99

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  ++   ++   Y F               + +L  +A   G    N H+
Sbjct: 100 -------FEAYQLIYPNYIFYCTLKASRKSLPRLINHQLGTVASCCGYSLQNHHN 147


>gi|239932382|ref|ZP_04689335.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291440749|ref|ZP_06580139.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291343644|gb|EFE70600.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 241

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 57/190 (30%), Gaps = 18/190 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V  D          V              A  + G+T + 
Sbjct: 12  FDTETTGVDVEADRIVSAALVVQDAPGT---RPRVTDWLVNPGVPVPAAATEVHGLTQEH 68

Query: 68  ALRDGVVEAEFSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             R+G   A     + Q     +     ++  N   FD         R+   S    +  
Sbjct: 69  LQRNGRWPAPVMYEVAQALAEQARVGRPLVVMNAP-FDLTLLDRELRRHRASSLSRWF-- 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R  LL  +           ++           L DL    G+    AHDA AD  A 
Sbjct: 126 --ERVPLL--VLDPRVLDKHLDRY-----RKGRRTLTDLCAHYGVPLEGAHDAAADAVAA 176

Query: 185 LALVWLIREK 194
           L +   +  +
Sbjct: 177 LEVTRAVGRR 186


>gi|255974861|ref|ZP_05425447.1| exonuclease [Enterococcus faecalis T2]
 gi|256763360|ref|ZP_05503940.1| exonuclease [Enterococcus faecalis T3]
 gi|255967733|gb|EET98355.1| exonuclease [Enterococcus faecalis T2]
 gi|256684611|gb|EEU24306.1| exonuclease [Enterococcus faecalis T3]
          Length = 183

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 53/191 (27%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F  +D+ET             A V+V      ++           +         I GI
Sbjct: 8   NFYAFDFET--ASYDKHSACSIAIVKV-ENSRIVDEFYTL---IKPETPFFWRNTQIHGI 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                +       E  ++I   F  PN  ++ +N                  D Y     
Sbjct: 62  HESDVVNAPK-FPEVWQQIQHCF-QPNRLVVAHNASFD------CSVLAGCLDYYGLEQP 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N    +  L  ++      P+            + KL  +     I   N HDA  D  A
Sbjct: 114 N----YLSLCTVKTSRKLFPE----------FPNHKLNTVCENLNITLNNHHDALEDSRA 159

Query: 184 TLALVWLIREK 194
              ++    ++
Sbjct: 160 CAEILLQQEQR 170


>gi|262392974|ref|YP_003284828.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|262336568|gb|ACY50363.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 209

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 49/194 (25%), Gaps = 20/194 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET   D         A  ++            F  +       D  +V I  I 
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSQP--FEVRLRAPQSLDSGSVKIHRIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q  +  G+ E E    +  F    N  ++GY+              +  +       + 
Sbjct: 88  HQDLVD-GISEKEALLELLDFI--GNRPLVGYHIRYDKKILDLACLRQLGFPLPNPLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+                   +      L  +     +   + HDA  D  + 
Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLDAICKHLELPIQDKHDALQDAISA 189

Query: 185 LALVWLIREKKPKL 198
             +   + +     
Sbjct: 190 ALVFVRLTKGDLPN 203


>gi|323492075|ref|ZP_08097237.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323313636|gb|EGA66738.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 210

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 51/193 (26%), Gaps = 20/193 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET   D         A  ++            F  +       D  +V I  I 
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKP--FEVRLRAPQSLDSGSVKIHKIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q  +  G+ E +   ++ +F    N  ++GY+              +  +       + 
Sbjct: 88  HQDLVD-GIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACQKQLGFPLPNPLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+                   +      L  +     +   + HDA  D  + 
Sbjct: 145 SQIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPMQDKHDALQDAISA 189

Query: 185 LALVWLIREKKPK 197
             +   + +    
Sbjct: 190 ALVFVRLTKGDLP 202


>gi|255719107|ref|XP_002555834.1| KLTH0G18590p [Lachancea thermotolerans]
 gi|238937218|emb|CAR25397.1| KLTH0G18590p [Lachancea thermotolerans]
          Length = 323

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 9/125 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFC------KPADDYLPDP 55
            V  D E  G D   D   +   +  D     I+      V  C         +  +   
Sbjct: 76  IVWVDCEMTGLDHVNDHIIEICCIITDGDLNIIDEAGYESVIHCDKKIMDAMNEWCIDHH 135

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            +  +T          G VE E    + ++       ++  N++  D  +    F +   
Sbjct: 136 GSSGLTQKVLDSTKTTGQVEEELLAYLRKYIPAERKGVLAGNSVHMDRVFMMREFPKVID 195

Query: 116 DSYRW 120
             +  
Sbjct: 196 HLFYR 200


>gi|319440529|ref|ZP_07989685.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM
           44702]
          Length = 214

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 22/187 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP---EAVFIT 61
            +  D ET G D   DR      V +D     I+ +        D    D    E+  + 
Sbjct: 26  LLAVDVETTGLDPKRDRLLSIGWVPLD--GRVIDLSGAREVILRDTVDHDAGVGESATLH 83

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T       G+   E    + +         +  +    +  +   +  R         
Sbjct: 84  GLTDDTVA-TGIPAGEALGELLEAIR---GRALLAHFAVMETGFLDAVCRREL------G 133

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D LD+ R         ++           +L  +    G+ + + H A  D 
Sbjct: 134 LRFEVPVVDTLDLERRH-------MERMGTYPRGEDLRLPRVRQRYGLPYYSNHRAVTDA 186

Query: 182 YATLALV 188
            A   L 
Sbjct: 187 LACAELY 193


>gi|319441121|ref|ZP_07990277.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM
           44702]
          Length = 228

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 44/172 (25%), Gaps = 30/172 (17%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A + ++         +               A  + GIT + 
Sbjct: 15  FDLETTGPDPLTARIVTSALITINGSHR-----DDLEILADPGIPIPEGATAVHGITTEY 69

Query: 68  ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A   G    E      +           +I YN                       ++  
Sbjct: 70  AREHGRPHDEVLAETIERIRRGWSEGATLIIYNAAYDLTVLRTLE----------PTFTV 119

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +D L V +A   +                 +L  +    G+   NAH+
Sbjct: 120 DGPVFDPLVVDKAKDRYR------------KGGRRLTQVCEHYGVTLDNAHE 159


>gi|330956986|gb|EGH57246.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 237

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 52/194 (26%), Gaps = 25/194 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G ++  D+      V ++     +    E    +      P   AV I G+ 
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P             ++ +  F        I   +  FD +        +     +  + +
Sbjct: 101 PSTIAAGSEP----AQALLDFMEFVGDSPILGFHAPFDQHMLARALKESLDYRLQHPFFD 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +L                           L D     G+     H+A AD   T
Sbjct: 157 AAEIAPML-----------------FEQANLRHAGLDDWTRYFGLHAEERHNASADALVT 199

Query: 185 LALVWLIREKKPKL 198
             L  ++     + 
Sbjct: 200 AELALILFSHARRQ 213


>gi|330898819|gb|EGH30238.1| exonuclease [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 237

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     +            D+   P AV I G+ P
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E      +F    ++ I+G++   FD +        +     + ++ + 
Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHAFFDA 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +L                           L D     G+     H A AD   T 
Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEQRHHASADALVTA 200

Query: 186 ALVWLIREKKPKL 198
            L  ++     + 
Sbjct: 201 ELALILFSHARRQ 213


>gi|296166805|ref|ZP_06849223.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897821|gb|EFG77409.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 330

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 77/295 (26%), Gaps = 38/295 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 19  VIDVETSGFRPGQARVISLAVLGLDDDGRVEQSVVSL---LNPGVDPGP--THVHGLTAA 73

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                     +F+  +     V +   +  +N+ FD  +          +    S     
Sbjct: 74  MLEDQP----QFADVVDDVVKVLDGRTLVAHNVAFDYAFLAAEAELAEAELPIDS----- 124

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
               ++  +                       +L+ LA   G+     HDA  D      
Sbjct: 125 ----VMCTVELARRLDLGIDN----------LRLETLAAHWGVPQERPHDAFDDAMVLTG 170

Query: 187 LVWLI--REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
           ++     R ++  ++  ++    +      +    + PL  ++               + 
Sbjct: 171 VLASALERARQRDIWLPVHPVTRRRWPNGRVTHDELRPLKVLASR--------MPCPYLN 222

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
                +   +   +   +         +L +R+  +       V      V  N 
Sbjct: 223 PGHYVRGRPLVQGMRVALAAEVGRTHEELVERILHAGLAYSDAVDRETSLVICND 277


>gi|91228447|ref|ZP_01262371.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|269966808|ref|ZP_06180881.1| putative DNA polymerase III, epsilon subunit [Vibrio alginolyticus
           40B]
 gi|91187982|gb|EAS74290.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|269828475|gb|EEZ82736.1| putative DNA polymerase III, epsilon subunit [Vibrio alginolyticus
           40B]
          Length = 209

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 49/194 (25%), Gaps = 20/194 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET   D         A  ++            F  +       D  +V I  I 
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSQP--FEVRLRAPQSLDSGSVKIHRIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q  +  G+ E E    +  F    N  ++GY+              +  +       + 
Sbjct: 88  HQDLVD-GISEKEALLELLDFI--GNRPLVGYHIRYDKKILDLACLRQLGFPLPNPLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+                   +      L  +     +   + HDA  D  + 
Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLDAICKHLELPIQDKHDALQDAISA 189

Query: 185 LALVWLIREKKPKL 198
             +   + +     
Sbjct: 190 ALVFVRLTKGDLPN 203


>gi|238792291|ref|ZP_04635926.1| Ribonuclease T [Yersinia intermedia ATCC 29909]
 gi|238728528|gb|EEQ20047.1| Ribonuclease T [Yersinia intermedia ATCC 29909]
          Length = 226

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++++    + + T  F  +P +     PEA+   G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    L  GI      A
Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 192 HSALYDTMQTAKLFCELVNR 211


>gi|313496718|gb|ADR58084.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1]
          Length = 236

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +   D+      V ++     I+  + F             +V I G+ P
Sbjct: 42  VVLDLETSGLNPNRDQVLSIGAVAIEDGA--IDFAQQFERTLHRPLQKTNASVLIHGLGP 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             AL  G   AE    +  F    N+ ++ ++       + + +  R   +S  +   + 
Sbjct: 100 S-ALAAGCDPAEALLDLLDFI--GNSPVLAFH-----APFDQRMLARALKESLGYRLQSP 151

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L  M        +               L D     G++    H A AD   T 
Sbjct: 152 FLDIAELAPMLNPDTVLREAG-------------LDDWVARFGLQVEERHHASADAQVTA 198

Query: 186 ALVWLIREKKPKL 198
            L  ++  +  + 
Sbjct: 199 ELALILFSQARRQ 211


>gi|26987095|ref|NP_742520.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
 gi|24981722|gb|AAN65984.1|AE016227_5 exonuclease [Pseudomonas putida KT2440]
          Length = 236

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +   D+      V ++     I+  + F             +V I G+ P
Sbjct: 42  VVLDLETSGLNPNRDQVLSIGAVAIEDGA--IDFAQQFERTLHRPLQKTNASVLIHGLGP 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             AL  G   AE    +  F    N+ ++ ++       + + +  R   +S  +   + 
Sbjct: 100 S-ALAAGCDPAEALLDLLDFI--GNSPVLAFH-----APFDQRMLARALKESLGYRLQSP 151

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L  M        +               L D     G++    H A AD   T 
Sbjct: 152 FLDIAELAPMLNPDTVLREAG-------------LDDWVARFGLQVEERHHASADAQVTA 198

Query: 186 ALVWLIREKKPKL 198
            L  ++  +  + 
Sbjct: 199 ELALILFSQARRQ 211


>gi|71667552|ref|XP_820724.1| exonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70886080|gb|EAN98873.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 223

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 5/90 (5%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE----VFFCKPADDYLPDPEAVFIT 61
          +  D ET G     D       V +      ++        FF           +A  + 
Sbjct: 4  ICVDLETTGFSAQRDDVVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAEAVH 63

Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT 91
          G++ +       +E +       F    + 
Sbjct: 64 GLSFEMLRDAPPLE-DVISDFAAFLIQLDG 92


>gi|311279484|ref|YP_003941715.1| ribonuclease T [Enterobacter cloacae SCF1]
 gi|308748679|gb|ADO48431.1| ribonuclease T [Enterobacter cloacae SCF1]
          Length = 217

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 62/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLMPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYDALHAIFKAVRKGIKDQNCNRAIMVAHNATFDHSFVMAAAERAGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      +A     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACIAAGMAFDGAQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTEQTAQLFCEIVNR 200


>gi|86160112|ref|YP_466897.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776623|gb|ABC83460.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 200

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 12/186 (6%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G D   D       + V     ++        +P       P +V    +    
Sbjct: 16  LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                   AE    + +        ++ ++    +  + +  F             +   
Sbjct: 76  TRGAPA-LAEVLPELERRLR--GAVLLVHHAP-IELGFLKRAFRAAGLRWPAPPVVDTVK 131

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
               LD        + +  ++P          L       G+    AHDA  D  AT  L
Sbjct: 132 LLLRLD--------ARERRRFPELPADPPVLNLSAARRRLGLPDYQAHDALTDAVATAEL 183

Query: 188 VWLIRE 193
             ++RE
Sbjct: 184 FLVLRE 189


>gi|227501727|ref|ZP_03931776.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
 gi|227077752|gb|EEI15715.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
          Length = 223

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + +D ET   +    R    A VR+D +  +                    A  + GIT 
Sbjct: 9   LAFDLETTSANPKDARIVTSALVRIDGRDVQKVEHLA-----DPGIEIPQAATDVHGITT 63

Query: 66  QKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +KA  +G    E  +               +I YN                         
Sbjct: 64  EKAQAEGHPHEEVLKNTVDAIKEAWDDGLTLIVYNAAFDLTVL----------------- 106

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +    + +   +   Y       +W           L  +    G+E  NAH+A AD  
Sbjct: 107 RSLTGDFTVTGPVFDPYVIDRVSDKW-----RKGKRTLGAVCEHYGVELGNAHEATADAL 161

Query: 183 ATLALVWLIREKKPKLFEYL 202
           A   + W    +       +
Sbjct: 162 AAARVAWKQVRQHYPNLAQM 181


>gi|119504386|ref|ZP_01626466.1| ribonuclease T [marine gamma proteobacterium HTCC2080]
 gi|119459894|gb|EAW40989.1| ribonuclease T [marine gamma proteobacterium HTCC2080]
          Length = 216

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 72/210 (34%), Gaps = 35/210 (16%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYL 52
           M + F     VI D ET G + A D   + A   + VD + E +   T  F  +P +   
Sbjct: 9   MRDRFRGFLPVIVDVETGGFNAATDALLEVAATLIHVDDRGEVVLGDTISFNVEPFEGAN 68

Query: 53  PDPEAVFITGITPQKALRDGVVEA----EFSRRIHQFFSV--PNTCIIGYNNIRFDDYYS 106
            +  A+  TGI P+  LR  + EA    +   RI +       N  I+  +N  FD  + 
Sbjct: 69  IEASALEFTGIDPENPLRAALPEAIALGDLFTRIRKEVRDTGCNRAILVGHNAHFDAGFI 128

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
            +   R       +      S +D   +    +  +                 L      
Sbjct: 129 NSASLRCDIKRNPFH---PFSHFDTATLAGLAFGHTV----------------LAQACRR 169

Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREK 194
            GIE  N  AH A  D   T  L   I  +
Sbjct: 170 AGIEFNNSEAHSAAYDATKTAELFCCIVNQ 199


>gi|322822112|gb|EFZ28257.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 271

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 5/89 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE----VFFCKPADDYLPDPEAVFIT 61
           +  D ET G     D       V +      ++        FF           +A  + 
Sbjct: 52  ICVDLETTGFSAQCDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAEAVH 111

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           G++ +       +E +       F    +
Sbjct: 112 GLSFEMLRDAPPLE-DVISDFAAFLIQLD 139


>gi|297559415|ref|YP_003678389.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843863|gb|ADH65883.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 339

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 54/200 (27%), Gaps = 34/200 (17%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFIT 61
           + + D ET G +     R  + A VRV    + +E          P              
Sbjct: 23  YAVLDMETTGLEPREGARIVEIAVVRVRGDGKFVEEFSTLIDPRAPVGGREF-------H 75

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI     +      A+   R+ +  S     ++  +N+ F+  +  +             
Sbjct: 76  GIGEGDTVGAPTA-AQVVPRLTELLS---GAVVVGHNLDFEQRFLASELVPAGLP----- 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
              G +    L  +R+                   S +L       G      H A  D 
Sbjct: 127 --TGQAGLCTLRALRSQVEL-------ERYSLPKASHRLS------GDWPTGQHTALGDA 171

Query: 182 YATLALVWLIREKKPKLFEY 201
            A   L+  +    P    Y
Sbjct: 172 RACAKLLAEMLTNAPGELRY 191


>gi|226942744|ref|YP_002797817.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ]
 gi|226717671|gb|ACO76842.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ]
          Length = 240

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 6/157 (3%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             FV+ D ET G +V  D       V ++     I+ +  F C          E+V I G
Sbjct: 42  QRFVVLDLETTGLNVERDVVLSIGAVLIENDA--IDLSRQFECTLRRRLKSVTESVLIHG 99

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I P             +  + +F      C+    +  FD                R  +
Sbjct: 100 IAPSALAVGTAP----AEALLRFMEYAGDCVFLAFHAPFDQRMLGRALKDELGYRLRHPF 155

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
            +      +L     ++    D        D +    
Sbjct: 156 LDVADLAPMLFPEALVHPGGLDQWIQYFGLDMSRRHH 192


>gi|330874768|gb|EGH08917.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 237

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 25/194 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G ++  D+      V ++     +    E    +      P   AV I G+ 
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSP---AVLIHGLA 100

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P  A+  G    E      +F       I+G++   FD +        +     + ++ +
Sbjct: 101 PS-AIAAGSEPVEALLDFMEFVGESP--ILGFHAP-FDQHMLARALKESLDYRLQHAFFD 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +L                           L D     G+     H+A AD   T
Sbjct: 157 AAEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVT 199

Query: 185 LALVWLIREKKPKL 198
             L  ++     + 
Sbjct: 200 AELALILFSHARRQ 213


>gi|307248305|ref|ZP_07530330.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307263945|ref|ZP_07545548.1| hypothetical protein appser13_13530 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306855175|gb|EFM87353.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306870707|gb|EFN02448.1| hypothetical protein appser13_13530 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 239

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 50/195 (25%), Gaps = 25/195 (12%)

Query: 22  PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81
             +   V V            F          D EA+ + GIT +      V  AE +  
Sbjct: 13  IIEIGAVEV-INRRLTGR--TFHVYIKPPREVDEEAIKVHGITNEFLQDKPV-FAEVADE 68

Query: 82  IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAF 141
             +F       I   +N  FD  +    F        +       S  D L V R +Y  
Sbjct: 69  FIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT--AEMCSVTDSLAVARKMYPG 123

Query: 142 SPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLIREKKPKLF 199
                             L  L    GI++     H A  D      +  ++   +  L 
Sbjct: 124 --------------KRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALL 169

Query: 200 EYLYDYRNKNQLRKL 214
                      +  L
Sbjct: 170 GEEDATATHENVADL 184


>gi|153821463|ref|ZP_01974130.1| exonuclease family [Vibrio cholerae B33]
 gi|229509131|ref|ZP_04398618.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Vibrio cholerae B33]
 gi|229608803|ref|YP_002879451.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio
           cholerae MJ-1236]
 gi|126521063|gb|EAZ78286.1| exonuclease family [Vibrio cholerae B33]
 gi|229353888|gb|EEO18823.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases
           [Vibrio cholerae B33]
 gi|229371458|gb|ACQ61881.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio
           cholerae MJ-1236]
          Length = 301

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 71/237 (29%), Gaps = 15/237 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G     +   +   V+V         +   +V                 +TG
Sbjct: 53  VLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT        + ++  +  +       +  ++  +N +FD  +    F    + S+  S 
Sbjct: 113 ITDDMVQGQHIDDSLVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176
              + +    +  +  Y     G  +               F L   ++AN +   +   
Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRT 226

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                +     V    +++   +       NK+  R++ + +      ++  ++   
Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283


>gi|77543206|gb|ABA87018.1| hypothetical protein [Vibrio cholerae]
 gi|259156499|gb|ACV96443.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Mex1]
          Length = 301

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 76/237 (32%), Gaps = 15/237 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPE-AVFITG 62
           V+ D ET G     +   +   V+V      ++I S         D   P PE    +TG
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT        + ++  +  +       +  ++  +N +FD  +    F    + S+  S 
Sbjct: 113 ITDDMVRGQRIDDSLVASWL------SDDPLVVAHNAQFDRPFFEKRFAALGHLSWACSA 166

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176
              + +    +  +  Y     G  +               F L   ++AN +   +   
Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRT 226

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                +     V    +++   +       NK+  R++ + +      ++  ++   
Sbjct: 227 VLVRAFGAPFEVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283


>gi|83757883|gb|ABC45996.1| exonuclease family [Salinibacter ruber DSM 13855]
          Length = 538

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 44/171 (25%), Gaps = 27/171 (15%)

Query: 24  QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83
           +   V+V R    ++  +                  +TGIT            E      
Sbjct: 2   EIGAVKV-RDGSVVDRFQQL---VNPQQSVPGRITKMTGITTGMVFEAP-PADEVLPDYR 56

Query: 84  QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143
            F       I+  +N+ FD  +      R   ++              L  +R      P
Sbjct: 57  AFLGDG---ILVAHNVSFDGSFLDAELQRMGDETLPNE---------TLCTVRLARRLLP 104

Query: 144 DGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
                        S  L  LA    I+    H A  D  AT  ++     +
Sbjct: 105 GLD----------SKGLSRLAQFYDIDVEGRHRALGDAEATSVVLRRFVSQ 145


>gi|212639167|ref|YP_002315687.1| hypothetical protein Aflv_1334 [Anoxybacillus flavithermus WK1]
 gi|212560647|gb|ACJ33702.1| 3'-5' exonuclease related protein [Anoxybacillus flavithermus WK1]
          Length = 240

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 59/203 (29%), Gaps = 31/203 (15%)

Query: 4   HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFC-KPADDYLPDPEAVFIT 61
            F++ D ET G      D     A ++              +C             V +T
Sbjct: 57  TFILLDTETTGFSPQRGDEIFSLAALKTKN-----GEPLDLYCSNFRPKRRIPEHVVTLT 111

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT        ++E E    IH   S  N  I+   +I+ D  +      RN+    + +
Sbjct: 112 GITNDDVAYAPLLEEE----IHHILSFLNHSILLGYHIQHDVAFLNEFLSRNYRTVLQQT 167

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                               + +  +        +   L D      +  ++ H AK DV
Sbjct: 168 --------------------TIEMRKIMECIYHESFPTLDDALSFYHLTPIDRHTAKGDV 207

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
            +   +   +  +  +L      
Sbjct: 208 MSLFEMWKRVFIELQQLQIDTLH 230


>gi|207743707|ref|YP_002260099.1| oligoribonuclease protein [Ralstonia solanacearum IPO1609]
 gi|206595106|emb|CAQ62033.1| oligoribonuclease protein [Ralstonia solanacearum IPO1609]
          Length = 219

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60
           N+ V  D E  G     DR  + A V  D +   +    V     +D+ L   +A     
Sbjct: 28  NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQSDEILDGMDAWNKGT 87

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    K       EA+    +  F       +   +  N+I  D  +      +   
Sbjct: 88  HGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEA 147

Query: 116 DSYRW 120
             +  
Sbjct: 148 YFHYR 152


>gi|194445493|ref|YP_002040683.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194404156|gb|ACF64378.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 215

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 63/211 (29%), Gaps = 26/211 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + + T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  I+  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      LA     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRN 207
           A  D   T  L   I  +  +L  +      
Sbjct: 183 ALYDTERTAVLFCEIVNRWKRLGGWPLPLST 213


>gi|332161660|ref|YP_004298237.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665890|gb|ADZ42534.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330864087|emb|CBX74161.1| ribonuclease T [Yersinia enterocolitica W22703]
          Length = 232

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++++    + + T  F   P +    +PEA+   G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    L  GI      A
Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 192 HSALYDTMQTAKLFCELVNR 211


>gi|123442415|ref|YP_001006394.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|166200024|sp|A1JP36|RNT_YERE8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|122089376|emb|CAL12224.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 215

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++++    + + T  F   P +    +PEA+   G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    L  GI      A
Sbjct: 140 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 181 HSALYDTMQTAKLFCELVNR 200


>gi|90408436|ref|ZP_01216597.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
 gi|90310470|gb|EAS38594.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
          Length = 237

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 53/194 (27%), Gaps = 19/194 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F++ D+ET G     +       V +        S E  +    +D   + E   I  I
Sbjct: 49  SFLVVDFETTGLIAKYNDIISIGWVEISNLQVVCASQEHIY--INNDKKINHETAVINHI 106

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            PQ     GV   +    I+         I+  +    +  +     ++ F         
Sbjct: 107 VPQMLR-QGVSLHDA---INALLIKAKGKILVVHGKVIEQCFLDFYMHQYF--------- 153

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   + ++                   A   +L    +   +    AH+A  D  +
Sbjct: 154 ----ALPKIPLLWIDTLLIEKWRAVQKGMTLAQDNRLGSARIRYNLPQYTAHNALIDSIS 209

Query: 184 TLALVWLIREKKPK 197
           T  L+        +
Sbjct: 210 TAELLLAQIAHIYQ 223


>gi|28899651|ref|NP_799256.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260361502|ref|ZP_05774549.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260879140|ref|ZP_05891495.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260895473|ref|ZP_05903969.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260903319|ref|ZP_05911714.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|28807903|dbj|BAC61140.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088058|gb|EFO37753.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091615|gb|EFO41310.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308109530|gb|EFO47070.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308112864|gb|EFO50404.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|328472225|gb|EGF43095.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 209

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 20/194 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET   D         A  ++     +I +++ F  +       D  +V I  I 
Sbjct: 30  FVSLDCETTSLDPNRAELVTIAATKIID--NRILTSQPFEVRLRAPQSLDSGSVKIHKIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q     G+ E E   ++  F    N  ++GY+              +  +       + 
Sbjct: 88  HQDLAD-GISEKEALLKLLAFI--GNRPLVGYHIRYDKKILDLACQRQLGFPLPNPLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+                   +      L  +     +   + HDA  D  + 
Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLDAICKHLELPIQDKHDALQDAISA 189

Query: 185 LALVWLIREKKPKL 198
             +   + +     
Sbjct: 190 ALVFVRLTKGDLPN 203


>gi|261250461|ref|ZP_05943036.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260939030|gb|EEX95017.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 210

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 50/193 (25%), Gaps = 20/193 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET   D         A  ++            F  +       D  +V I  I 
Sbjct: 30  FVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKP--FEVRLRAPQSLDSGSVKIHHIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q     G+ E +   ++ +F    N  ++GY+              +  +       + 
Sbjct: 88  HQDLAD-GIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACRKQLGFPLPNPLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+                   +      L  +     +   N HDA  D  A 
Sbjct: 145 SQIYHDKLEK---------------HLPNAYFDLSLDAICKHLDLPLQNKHDALQDAIAA 189

Query: 185 LALVWLIREKKPK 197
             +   + +    
Sbjct: 190 ALIFVRLTKGDLP 202


>gi|161503473|ref|YP_001570585.1| ribonuclease T [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|204927787|ref|ZP_03218988.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205352852|ref|YP_002226653.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857062|ref|YP_002243713.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|160864820|gb|ABX21443.1| hypothetical protein SARI_01547 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|204323129|gb|EDZ08325.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205272633|emb|CAR37543.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206708865|emb|CAR33195.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627923|gb|EGE34266.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 215

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + + T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  I+  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      LA     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTERTAVLFCEIVNR 200


>gi|16760479|ref|NP_456096.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16764782|ref|NP_460397.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141761|ref|NP_805103.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56413597|ref|YP_150672.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|167551596|ref|ZP_02345350.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167994263|ref|ZP_02575355.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168229807|ref|ZP_02654865.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168235505|ref|ZP_02660563.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168240948|ref|ZP_02665880.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168264727|ref|ZP_02686700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|194451220|ref|YP_002045472.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469134|ref|ZP_03075118.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194737431|ref|YP_002114446.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197251543|ref|YP_002146611.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197264202|ref|ZP_03164276.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197362521|ref|YP_002142158.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|200389402|ref|ZP_03216013.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|213426003|ref|ZP_03358753.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213586461|ref|ZP_03368287.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213609934|ref|ZP_03369760.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213649691|ref|ZP_03379744.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213855187|ref|ZP_03383427.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|238913165|ref|ZP_04657002.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289805704|ref|ZP_06536333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
 gi|289824912|ref|ZP_06544333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|54039259|sp|P66685|RNT_SALTI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|54042002|sp|P66684|RNT_SALTY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|81821446|sp|Q5PH07|RNT_SALPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|25356018|pir||AD0695 ribonuclease T [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16419954|gb|AAL20356.1| RNase T [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16502775|emb|CAD01933.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137389|gb|AAO68952.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56127854|gb|AAV77360.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|194409524|gb|ACF69743.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194455498|gb|EDX44337.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194712933|gb|ACF92154.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197093998|emb|CAR59494.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197215246|gb|ACH52643.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197242457|gb|EDY25077.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197291124|gb|EDY30477.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|199601847|gb|EDZ00393.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205323544|gb|EDZ11383.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327828|gb|EDZ14592.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335262|gb|EDZ22026.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205339447|gb|EDZ26211.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205346854|gb|EDZ33485.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|261246638|emb|CBG24448.1| Exoribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993323|gb|ACY88208.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157967|emb|CBW17462.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912417|dbj|BAJ36391.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224052|gb|EFX49115.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323129704|gb|ADX17134.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988319|gb|AEF07302.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 215

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + + T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  I+  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      LA     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTERTAVLFCEIVNR 200


>gi|297181362|gb|ADI17552.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [uncultured alpha proteobacterium HF0130_06E21]
          Length = 309

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 71/230 (30%), Gaps = 53/230 (23%)

Query: 1   MTNHF-----------VIYDYETFGRDVALDRPAQFAGVRVD---RQWEKI-----ESTE 41
           M   F           ++ D ET G     D   Q A +  D        +     E+ E
Sbjct: 34  MPEKFNEAPVGDVRRALVVDVETTGLSQETDDVMQLAMLPFDYEVETGRILTVYKDEAFE 93

Query: 42  VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
                         EA  ITGIT         ++AE    + +     N  ++  +N +F
Sbjct: 94  ALR---EPAAPISEEASIITGITADMVAGT-TIDAEAVAGMVE-----NADLVIAHNAKF 144

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D   +   +       +  +        D ++ +R  Y+                  KL 
Sbjct: 145 DRPMAEKNWDCFVNKPWACT-------LDGVNWLRQGYSAG----------------KLD 181

Query: 162 DLALANGIEHVNAHDAKADVYATLA-LVWLIREKKPKLFEYLYDYRNKNQ 210
            L +  G    + H A AD  A LA L   + +   ++   + +   K +
Sbjct: 182 YLGMQFGW-FYDGHQALADCEACLALLAQTLPKADVRVMAAVRESALKKE 230


>gi|297566007|ref|YP_003684979.1| exonuclease RNase T and DNA polymerase III [Meiothermus silvanus
           DSM 9946]
 gi|296850456|gb|ADH63471.1| Exonuclease RNase T and DNA polymerase III [Meiothermus silvanus
           DSM 9946]
          Length = 203

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 48/184 (26%), Gaps = 15/184 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +   D ET G     D+      V + +   +         +P        E +    I 
Sbjct: 19  YWALDLETSGLKP-QDQILSVGMVPIRKGVIRYGEHFYSLVRPHRFDTLSLEGLRAHQIR 77

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P +         +  R +HQ        ++ ++ +  D  + R  + R            
Sbjct: 78  PFELREAP-PLCQVLREVHQRLKE--GVLLVHHAL-VDVAFLRRAYARCDLVWPE----- 128

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + ++  +          P          L        +    AH A  D  AT
Sbjct: 129 -PQVVDTVKLLHKLGQRRALLEPHPETPPEN----LAKARAFLDLPPYTAHHALTDALAT 183

Query: 185 LALV 188
             + 
Sbjct: 184 AEIF 187


>gi|88705709|ref|ZP_01103419.1| Ribonuclease T [Congregibacter litoralis KT71]
 gi|88700222|gb|EAQ97331.1| Ribonuclease T [Congregibacter litoralis KT71]
          Length = 210

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 64/216 (29%), Gaps = 31/216 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYL 52
           M + F     VI D ET G   + D   + A   VR+D   +  +  T  F   P +   
Sbjct: 3   MKSRFRGFLPVIVDMETGGFSSSTDAILEIAATVVRMDDTGQIAVHETHSFNVAPFEGAN 62

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS 106
            +  A+  TGI P    R+ + E E    + Q              I+  +N  FD  + 
Sbjct: 63  IEQSALDFTGIDPWHPFREALAEKEALGELFQIIRREIRDQECTRAILVGHNAHFDAGFL 122

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R       +   +      L  +       +    +                   
Sbjct: 123 NAAVERCEIKRNPFHPFSHFDTATLSGLAYGQTVLAKSCYE-----------------AG 165

Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
              ++  AH A  D   T  L   I     KL  ++
Sbjct: 166 IPFDNEQAHSAAYDAERTAELFCGIVNTWQKLGGWM 201


>gi|238757732|ref|ZP_04618915.1| Ribonuclease T [Yersinia aldovae ATCC 35236]
 gi|238703975|gb|EEP96509.1| Ribonuclease T [Yersinia aldovae ATCC 35236]
          Length = 226

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 61/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++++    + + T  F   P +    +PEA+   G
Sbjct: 31  VVIDVETAGFNAKTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    L  GI      A
Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 192 HSALYDTMQTAKLFCELVNR 211


>gi|294508356|ref|YP_003572414.1| DNA helicase II [Salinibacter ruber M8]
 gi|294344684|emb|CBH25462.1| DNA helicase II [Salinibacter ruber M8]
          Length = 1227

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 68/219 (31%), Gaps = 22/219 (10%)

Query: 5    FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63
            +V+ D E    D    R A+   ++V R    ++        P D    + E +  + G+
Sbjct: 827  YVMVDLEATSTDPRHCRVAEIGALKV-RDGTVVDRFSELVQLPEDLTADERETLRTVCGL 885

Query: 64   TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             P     +   EA+       F       ++ +N  R+D    R             + +
Sbjct: 886  DPASDFDEARPEADVWADFCDF--ADTAPLVAHNGQRYDFRVLRR---------LANTHE 934

Query: 124  NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                     D++ A +   PD  ++ +                   +   AH A AD   
Sbjct: 935  ADARWATTYDLLPAAHELFPDLRRYDAAHLRE---------TLLDDDADTAHRALADCED 985

Query: 184  TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
               ++  ++ ++ +    L        L   +  ++  P
Sbjct: 986  QQRILARMQAERARQRRRLAHEPLLPLLVAALTYESPAP 1024


>gi|226364575|ref|YP_002782357.1| DNA polymerase III subunit epsilon [Rhodococcus opacus B4]
 gi|226243064|dbj|BAH53412.1| putative exonuclease [Rhodococcus opacus B4]
          Length = 247

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 29/128 (22%), Gaps = 7/128 (5%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D ET G D    R        VD         E        +      A  + GI+
Sbjct: 9   ICAFDLETTGPDPTDARIVSACIAVVDAH-----HFESRTWLLDPEVPIPQGASDVHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            + A   G   A   R I      +      +   N  +D         R          
Sbjct: 64  TEYARAHGQDYATGYREIRDALYDAWTRDHAVVAFNASYDLTVMHTEGLRLGLPELVHGI 123

Query: 123 DNGNSRWD 130
                  D
Sbjct: 124 VVDPYVID 131


>gi|197124141|ref|YP_002136092.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K]
 gi|196173990|gb|ACG74963.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K]
          Length = 200

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 53/186 (28%), Gaps = 12/186 (6%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G D   D       + V     ++        +P       P +V    +    
Sbjct: 16  LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                   AE    + +     +  ++ ++      +  R                 G  
Sbjct: 76  TRGAPA-LAEVLPELERRLR--DAVLLVHHAPIELGFLKRAFRAAGLRWP-------GPP 125

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D + ++  +   + +  ++P          L       G+    AHDA  D  AT  L
Sbjct: 126 VVDTVKLL--LRLDARERRRFPELPADPPVLNLSAARRRLGLPDYQAHDALTDAVATAEL 183

Query: 188 VWLIRE 193
             ++RE
Sbjct: 184 FLVLRE 189


>gi|332977795|gb|EGK14553.1| DNA-directed DNA polymerase III epsilon subunit [Psychrobacter sp.
           1501(2011)]
          Length = 201

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 19/191 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ +V  D E  G +   D     A + ++    +        C+P    +P  E + I 
Sbjct: 30  SDKWVAIDCEMTGLNPKKDHLLSIAAIHINGSNIQSGQGLHLICRPP--VMPTKETIVIH 87

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+ P      G+   +   R+  F    N  I+GY                 F +    S
Sbjct: 88  GLRPIDVEN-GLSYEQMLERLLPFID--NRPIVGY----------CPQLDMGFLNKISKS 134

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +        ++D+               ++     + +L  +A    +  + AHDA  D 
Sbjct: 135 YMGTALPNPIIDI----RDLYNRYSGNRTQGISHQAQQLSSIATQLQLPELAAHDAYNDA 190

Query: 182 YATLALVWLIR 192
             T  +   +R
Sbjct: 191 LMTAMVFLHLR 201


>gi|315226729|ref|ZP_07868517.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|315120861|gb|EFT83993.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 292

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 58/192 (30%), Gaps = 17/192 (8%)

Query: 1   MTNHFVI-YDYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAV 58
           + + +++ +D ET G     D  A  + V  D       +    +          +P A 
Sbjct: 58  LKDSYLLGFDTETTGACYGTDAIASASLVLRDPAAGFPGDRISQWI--INPGVPMNPFAS 115

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            + G T       G  +AE   +I +    +      +   N  FD         R    
Sbjct: 116 QVNGFTDAYLQEHGQDQAEAIGQIAETILLAQSKRIPLLAYNAPFDVAMLDGDLRRLGDR 175

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAH 175
           +      +      ++D +    + S                 L D     G+  H + H
Sbjct: 176 NLNQQTQDLGHELLIVDPLVLDRSVSH----------RKGKRTLTDTTYYYGVQPHGSFH 225

Query: 176 DAKADVYATLAL 187
           DA AD  A + L
Sbjct: 226 DATADTIAAVDL 237


>gi|294787077|ref|ZP_06752331.1| DNA polymerase III, epsilon subunit [Parascardovia denticolens
           F0305]
 gi|294485910|gb|EFG33544.1| DNA polymerase III, epsilon subunit [Parascardovia denticolens
           F0305]
          Length = 244

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 58/192 (30%), Gaps = 17/192 (8%)

Query: 1   MTNHFVI-YDYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAV 58
           + + +++ +D ET G     D  A  + V  D       +    +          +P A 
Sbjct: 10  LKDSYLLGFDTETTGACYGTDAIASASLVLRDPAAGFPGDRISQWI--INPGVPMNPFAS 67

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            + G T       G  +AE   +I +    +      +   N  FD         R    
Sbjct: 68  QVNGFTDAYLQEHGQDQAEAIGQIAETILLAQSKRIPLLAYNAPFDVAMLDGDLRRLGDR 127

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAH 175
           +      +      ++D +    + S                 L D     G+  H + H
Sbjct: 128 NLNQQTQDLGHELLIVDPLVLDRSVSH----------RKGKRTLTDTTYYYGVQPHGSFH 177

Query: 176 DAKADVYATLAL 187
           DA AD  A + L
Sbjct: 178 DATADTIAAVDL 189


>gi|119471955|ref|ZP_01614240.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7]
 gi|119445213|gb|EAW26504.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7]
          Length = 234

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 54/200 (27%), Gaps = 25/200 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE------AV 58
           FV  D+ET G +   D       V          +    +CK +  ++  P       ++
Sbjct: 45  FVALDFETTGLNSKADDIVSVGLVPF--------TLARIYCKQSKHWVVQPRRNLSESSI 96

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GIT            +F   I        + +I  +    +  +  +       +  
Sbjct: 97  VIHGITHNDVDNAP----DFDNIIAPLLDALRSKVIVVHYAAIERGFFNSALLLRLKEHI 152

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +   +          +      +  G+     +    S +L D      +     H A 
Sbjct: 153 EFMVVDTME-------LERRALKAKQGLIGQIFNTKLGSLRLNDCRKRYSLPSYEGHHAL 205

Query: 179 ADVYATLALVWLIREKKPKL 198
            D  AT  L+          
Sbjct: 206 TDALATAELLQAQLRHHYTE 225


>gi|315656881|ref|ZP_07909768.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492836|gb|EFU82440.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 240

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 23/195 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G   + DR A  + +R         +    +          P A  + G+T + 
Sbjct: 19  FDTETTGVFTSRDRIATVSLIR-----RINGTDSPRYWIINPGVPMPPAAGRVNGLTDEY 73

Query: 68  ALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
              +GV       E +  I +        ++G+N   FD         R+   + R    
Sbjct: 74  LQANGVDPRVGLEEVAGIIEETMRR-GVPVVGFNV-TFDFAILEAELARHNLPTLR--QR 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVY 182
              S   ++D +                        L  +  A  +    + H+A+ADV 
Sbjct: 130 LEGSVGPIVDPLVLDRIL---------DRYRKGKRNLASVCTAYDLPLREDFHNAQADVS 180

Query: 183 ATLALVWLIREKKPK 197
           ATL L+  + E+ P+
Sbjct: 181 ATLDLLGAMSERFPE 195


>gi|258620661|ref|ZP_05715698.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573]
 gi|262172598|ref|ZP_06040276.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|258587176|gb|EEW11888.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573]
 gi|261893674|gb|EEY39660.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 209

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 51/196 (26%), Gaps = 22/196 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63
           +V  D ET   D         A  ++           EV  C P      D  +V I  I
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLCAPQS---LDSGSVRIHKI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q     G+ E E   ++  F    N  ++GY+                 +       +
Sbjct: 87  RHQDLQD-GLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIE 143

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+                   +      L  +     +   + HDA  D  A
Sbjct: 144 VSQIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPLQDKHDALQDAIA 188

Query: 184 TLALVWLIREKKPKLF 199
              +   + +     F
Sbjct: 189 AALVFVRLTKGDLPQF 204


>gi|258624141|ref|ZP_05719091.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258583572|gb|EEW08371.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 289

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 13/121 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G     D+  + A    D + E +        +       DP+A+ + GIT 
Sbjct: 107 LVLDTETTGLG-ERDQVIELA--VTDIRGEVL-----LCTRLRPTVGIDPQAMGVHGITE 158

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            +   +     + +  + +  S     ++ +N+        +      F D   W  +  
Sbjct: 159 AELSNEP-TWTQVAPALARLLS--GRHLVIFNSSFDSRMLRQTAS--AFGDQLSWWQEQN 213

Query: 126 N 126
            
Sbjct: 214 C 214


>gi|255320390|ref|ZP_05361574.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
           SK82]
 gi|262379328|ref|ZP_06072484.1| ribonuclease HI [Acinetobacter radioresistens SH164]
 gi|255302585|gb|EET81818.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
           SK82]
 gi|262298785|gb|EEY86698.1| ribonuclease HI [Acinetobacter radioresistens SH164]
          Length = 455

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V I GIT
Sbjct: 230 LILDTETTGFYFQDGDRIIEVGAIEM-VNRKLTGSSIHIYINPEK---PVGDSVDIHGIT 285

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +         AE +  +  +        I  +N  FD  +    F R  + 
Sbjct: 286 DEFLQDKPR-YAEIAEVLFNYLKGAE---IIAHNASFDMNFLDMEFKRAGFP 333


>gi|262382001|ref|ZP_06075139.1| exonuclease [Bacteroides sp. 2_1_33B]
 gi|262297178|gb|EEY85108.1| exonuclease [Bacteroides sp. 2_1_33B]
          Length = 192

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 70/199 (35%), Gaps = 26/199 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             + +D ET G     +   Q +G + +D      + +  F   P      + EA+ I  
Sbjct: 2   KLLFFDLETTGIKYWRNGVHQISGEIVIDG---VTKESFNFNVCPHPQCEIEEEALRICN 58

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVP--------NTCIIGYNNIRFDDYYSRNIFYRNF 114
           ++ ++         E   +     S             ++GYNN  FD+++ +       
Sbjct: 59  VSKEQIQAYP-PMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLK------- 110

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                +   NG+  +     + +I            +    T FK + +A A GI+  +A
Sbjct: 111 ----AFFVQNGDHYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSA 166

Query: 175 --HDAKADVYATLALVWLI 191
             HDA  D+  T  +   I
Sbjct: 167 KLHDASYDIQLTKEIYNRI 185


>gi|163840229|ref|YP_001624634.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
           33209]
 gi|162953705|gb|ABY23220.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
           33209]
          Length = 327

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 62/196 (31%), Gaps = 27/196 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+  F   D+ET   +     P      RV R  E +E        PA     DP  + I
Sbjct: 1   MSLDFTAIDFET--ANGFRGSPCAVGLSRV-RGGEIVEEAFWLMRPPAGHDRFDPRNIAI 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G+TPQ+              + +F       I+  +N  FD    R+    +       
Sbjct: 58  HGVTPQQVASQPR-FDRVFDEVQRFI---GQDILVAHNAAFDTGVMRSAQEVS------- 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  R+D    +                     S+ L  +A A G+  +N HDA  D
Sbjct: 107 --AKSGPRYDYACTVMLARRSY-----------SLPSYSLPFVAEAAGVPLINHHDAVED 153

Query: 181 VYATLALVWLIREKKP 196
             A   ++  I  +  
Sbjct: 154 ARACAGIMIDIVARHD 169


>gi|238782582|ref|ZP_04626613.1| Ribonuclease T [Yersinia bercovieri ATCC 43970]
 gi|238796368|ref|ZP_04639877.1| Ribonuclease T [Yersinia mollaretii ATCC 43969]
 gi|238716509|gb|EEQ08490.1| Ribonuclease T [Yersinia bercovieri ATCC 43970]
 gi|238719813|gb|EEQ11620.1| Ribonuclease T [Yersinia mollaretii ATCC 43969]
          Length = 226

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 58/200 (29%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V +    E     + T  F  +P +     PEA+   G
Sbjct: 31  VVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L    L  GI      A
Sbjct: 151 ------RNPFHPFATFDTAALSGLVLGQTV-------------LAKACLTAGIPFDSSQA 191

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  +
Sbjct: 192 HSALYDTMQTAKLFCELVNR 211


>gi|322650293|gb|EFY46707.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
          Length = 205

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + + T  F  +P       PEA+   G
Sbjct: 10  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 69

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  I+  +N  FD  +      R    
Sbjct: 70  IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLK 129

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      LA     +   AH 
Sbjct: 130 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 172

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 173 ALYDTERTAVLFCEIVNR 190


>gi|322615086|gb|EFY12009.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619925|gb|EFY16798.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322622237|gb|EFY19082.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627759|gb|EFY24549.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632896|gb|EFY29640.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322636613|gb|EFY33316.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322641194|gb|EFY37836.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644871|gb|EFY41404.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322655865|gb|EFY52167.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660193|gb|EFY56432.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665242|gb|EFY61430.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669499|gb|EFY65647.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673425|gb|EFY69527.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322677353|gb|EFY73417.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679984|gb|EFY76023.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687456|gb|EFY83428.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323194090|gb|EFZ79289.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198572|gb|EFZ83673.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202899|gb|EFZ87934.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208618|gb|EFZ93556.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211154|gb|EFZ96001.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217595|gb|EGA02310.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323218944|gb|EGA03454.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227078|gb|EGA11258.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229397|gb|EGA13520.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236896|gb|EGA20968.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240342|gb|EGA24386.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242669|gb|EGA26690.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323250235|gb|EGA34126.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252445|gb|EGA36292.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256463|gb|EGA40196.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261433|gb|EGA45016.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267209|gb|EGA50694.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323272728|gb|EGA56133.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 215

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + + T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  I+  +N  FD  +      R    
Sbjct: 80  IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D                    G T      LA     +   AH 
Sbjct: 140 ------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGMEFDGEKAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTERTAVLFCEIVNR 200


>gi|307252915|ref|ZP_07534803.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859553|gb|EFM91578.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 239

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 50/195 (25%), Gaps = 25/195 (12%)

Query: 22  PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81
             +   V V            F          + EA+ + GIT +      V  AE +  
Sbjct: 13  IIEIGAVEV-INRRLTGR--TFHVYIKPPREVEEEAIKVHGITNEFLQDKPV-FAEVADE 68

Query: 82  IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAF 141
             +F       I   +N  FD  +    F        +       S  D L V R +Y  
Sbjct: 69  FIEFIKGAELII---HNAPFDVAFMDQEFSYLENPPPKT--AEMCSVTDSLAVARKMYPG 123

Query: 142 SPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLIREKKPKLF 199
                             L  L    GI++     H A  D      +  ++   +  L 
Sbjct: 124 --------------KRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALL 169

Query: 200 EYLYDYRNKNQLRKL 214
                      +  L
Sbjct: 170 GEEDATATHENVADL 184


>gi|170050189|ref|XP_001859612.1| oligoribonuclease [Culex quinquefasciatus]
 gi|167871717|gb|EDS35100.1| oligoribonuclease [Culex quinquefasciatus]
          Length = 214

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 25/135 (18%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
            ++ V  D E  G +V  DR  + A +  ++  + +E           D +    A  + 
Sbjct: 35  QHNLVWIDLEMTGLNVETDRIIEIACIVTNKNLDVLER--------GPDIVIHEPAQIME 86

Query: 61  ------------TGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYY 105
                       TG+T Q      V  AE  +++  F         C +  N+I  D  +
Sbjct: 87  AMNEWCKVNHAKTGLT-QAVADSKVTLAEAEQQVLDFVKRHCPEKACPLAGNSIYMDRMF 145

Query: 106 SRNIFYRNFYDSYRW 120
                 R     +  
Sbjct: 146 LNRYMPRLNDYLHYR 160


>gi|256839708|ref|ZP_05545217.1| exonuclease [Parabacteroides sp. D13]
 gi|256738638|gb|EEU51963.1| exonuclease [Parabacteroides sp. D13]
          Length = 192

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 26/199 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             + +D ET G     +   Q +G + +D      + +  F   P      + EA+ I  
Sbjct: 2   KLLFFDLETTGIKYWRNGVHQISGEIVIDG---VTKESFNFNVCPHPQCEIEEEALRICN 58

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVP--------NTCIIGYNNIRFDDYYSRNIFYRNF 114
           ++ ++         E   +     S             ++GYNN  FD+++ +       
Sbjct: 59  VSKEQIQAYP-PMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLK------- 110

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                +   NG++ +     + +I            +    T FK + +A A GI+  +A
Sbjct: 111 ----AFFVQNGDNYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSA 166

Query: 175 --HDAKADVYATLALVWLI 191
             HDA  D+  T  +   I
Sbjct: 167 KLHDASYDIQLTKKIYNRI 185


>gi|77164160|ref|YP_342685.1| exonuclease [Nitrosococcus oceani ATCC 19707]
 gi|254435603|ref|ZP_05049110.1| exonuclease superfamily [Nitrosococcus oceani AFC27]
 gi|76882474|gb|ABA57155.1| Exonuclease [Nitrosococcus oceani ATCC 19707]
 gi|207088714|gb|EDZ65986.1| exonuclease superfamily [Nitrosococcus oceani AFC27]
          Length = 205

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 17/208 (8%)

Query: 1   MTNHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           + + +++ D ET G                 V     +I  +  F  +P        EA 
Sbjct: 12  LPDDYIVLDTETTGLPDENGLPDIVTLGITVVSN--REIAESVEFKTRPQ--KRISEEAQ 67

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GIT ++A      +++  ++I ++       +I  +N  FD     +   R+     
Sbjct: 68  SIHGITNKQAAAFDSFDSQ-WQQISEYLKHQ---LIVIHNASFDWPILLDHVLRHGL--- 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                 G        +  A     P   + PS D    +  ++DL     ++    H AK
Sbjct: 121 AMPEIQGVFCSQKAAIPWAQAMDLPCSHRGPSLDTLTKALGVEDLR----VKEDGLHGAK 176

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYR 206
            D      +V +I   +   +  + ++R
Sbjct: 177 IDSRQLAQVVQVISRNENMEWVLIVNHR 204


>gi|190572046|ref|YP_001966288.1| unknown [Pseudomonas sp. CT14]
 gi|75707029|gb|ABA25992.1| unknown [Pseudomonas sp. CT14]
          Length = 197

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 51/192 (26%), Gaps = 27/192 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G     D   +   +  D     +                  EA  I  IT   
Sbjct: 16  LDTETTGVG-DGDEVCEITIL--DASGTPL-----LNTLIRPTQPIPAEATGIHRITNDM 67

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                    E + +     S      +   N  FD+        R+              
Sbjct: 68  VATAPA-WPEIAEQYASIVS---GRTVVAYNASFDERLLSQTHQRHGL------------ 111

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDD---GATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               L    A+  ++    +W             KL + A A G+    AH + AD   T
Sbjct: 112 VAPALATACAMLLYAEWHGEWVEGRYGAWQWRWIKLIEAARACGVLEDGAHRSLADARMT 171

Query: 185 LALVWLIREKKP 196
           L ++  + ++  
Sbjct: 172 LGVLRYLHKRTN 183


>gi|241589662|ref|YP_002979687.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12D]
 gi|240868374|gb|ACS66033.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
           12D]
          Length = 330

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 27/186 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V  D ET G   A  D   + A +  D   + +  T +      +     P A  I GIT
Sbjct: 161 VYLDTETTGLSAASGDELLELAVI--DDAGKVLFETLIRPNHLTEW----PAAQVIHGIT 214

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P          +   + +          +I   N  FD  +                   
Sbjct: 215 PADVAGAP-SLSAVLQGLAAAIEGAEALVIF--NADFDLGF---------LPEPLRPLAK 262

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKADVYA 183
             +R        A+ AF+    +W           LQ  A   G      AH A+AD +A
Sbjct: 263 QKARC-------AMQAFALWCGEWDDYRYSYRWQNLQQAAAIAGHVWEGRAHRARADAFA 315

Query: 184 TLALVW 189
              +  
Sbjct: 316 VRTVWH 321


>gi|17545661|ref|NP_519063.1| oligoribonuclease [Ralstonia solanacearum GMI1000]
 gi|21263804|sp|Q8Y0V1|ORN_RALSO RecName: Full=Oligoribonuclease
 gi|17427954|emb|CAD14644.1| probable oligoribonuclease protein [Ralstonia solanacearum GMI1000]
          Length = 219

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60
           N+ V  D E  G     DR  + A V  D +   +    V      D+ L   +A     
Sbjct: 28  NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDEILDGMDAWNKGT 87

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    K       EA+    +  F       +   +  N+I  D  +      +   
Sbjct: 88  HGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEA 147

Query: 116 DSYRW 120
             +  
Sbjct: 148 YFHYR 152


>gi|29377213|ref|NP_816367.1| exonuclease [Enterococcus faecalis V583]
 gi|227554221|ref|ZP_03984268.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22]
 gi|229549147|ref|ZP_04437872.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200]
 gi|255971865|ref|ZP_05422451.1| exonuclease [Enterococcus faecalis T1]
 gi|256957963|ref|ZP_05562134.1| exonuclease [Enterococcus faecalis DS5]
 gi|256961017|ref|ZP_05565188.1| exonuclease [Enterococcus faecalis Merz96]
 gi|257079901|ref|ZP_05574262.1| exonuclease [Enterococcus faecalis JH1]
 gi|257087703|ref|ZP_05582064.1| exonuclease [Enterococcus faecalis D6]
 gi|293384593|ref|ZP_06630459.1| exonuclease [Enterococcus faecalis R712]
 gi|293386822|ref|ZP_06631393.1| exonuclease [Enterococcus faecalis S613]
 gi|294779917|ref|ZP_06745299.1| exonuclease [Enterococcus faecalis PC1.1]
 gi|300861254|ref|ZP_07107341.1| exonuclease [Enterococcus faecalis TUSoD Ef11]
 gi|307269234|ref|ZP_07550588.1| exonuclease [Enterococcus faecalis TX4248]
 gi|307276973|ref|ZP_07558083.1| exonuclease [Enterococcus faecalis TX2134]
 gi|312906419|ref|ZP_07765427.1| exonuclease [Enterococcus faecalis DAPTO 512]
 gi|312951911|ref|ZP_07770799.1| exonuclease [Enterococcus faecalis TX0102]
 gi|312979422|ref|ZP_07791110.1| exonuclease [Enterococcus faecalis DAPTO 516]
 gi|29344679|gb|AAO82437.1| exonuclease [Enterococcus faecalis V583]
 gi|227176668|gb|EEI57640.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22]
 gi|229305701|gb|EEN71697.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200]
 gi|255962883|gb|EET95359.1| exonuclease [Enterococcus faecalis T1]
 gi|256948459|gb|EEU65091.1| exonuclease [Enterococcus faecalis DS5]
 gi|256951513|gb|EEU68145.1| exonuclease [Enterococcus faecalis Merz96]
 gi|256987931|gb|EEU75233.1| exonuclease [Enterococcus faecalis JH1]
 gi|256995733|gb|EEU83035.1| exonuclease [Enterococcus faecalis D6]
 gi|291078139|gb|EFE15503.1| exonuclease [Enterococcus faecalis R712]
 gi|291083825|gb|EFE20788.1| exonuclease [Enterococcus faecalis S613]
 gi|294453029|gb|EFG21449.1| exonuclease [Enterococcus faecalis PC1.1]
 gi|295113676|emb|CBL32313.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Enterococcus sp. 7L76]
 gi|300850293|gb|EFK78043.1| exonuclease [Enterococcus faecalis TUSoD Ef11]
 gi|306506396|gb|EFM75556.1| exonuclease [Enterococcus faecalis TX2134]
 gi|306514453|gb|EFM83014.1| exonuclease [Enterococcus faecalis TX4248]
 gi|310627573|gb|EFQ10856.1| exonuclease [Enterococcus faecalis DAPTO 512]
 gi|310630100|gb|EFQ13383.1| exonuclease [Enterococcus faecalis TX0102]
 gi|311287793|gb|EFQ66349.1| exonuclease [Enterococcus faecalis DAPTO 516]
 gi|315025497|gb|EFT37429.1| exonuclease [Enterococcus faecalis TX2137]
 gi|315035108|gb|EFT47040.1| exonuclease [Enterococcus faecalis TX0027]
 gi|315154299|gb|EFT98315.1| exonuclease [Enterococcus faecalis TX0031]
 gi|315159608|gb|EFU03625.1| exonuclease [Enterococcus faecalis TX0312]
 gi|315162098|gb|EFU06115.1| exonuclease [Enterococcus faecalis TX0645]
 gi|315573774|gb|EFU85965.1| exonuclease [Enterococcus faecalis TX0309B]
 gi|315580288|gb|EFU92479.1| exonuclease [Enterococcus faecalis TX0309A]
 gi|323481659|gb|ADX81098.1| DNA polymerase III, epsilon subunit, 3'-5' exonuclease family
           protein [Enterococcus faecalis 62]
 gi|329578017|gb|EGG59432.1| exonuclease [Enterococcus faecalis TX1467]
          Length = 177

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 51/191 (26%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F  +D+ET             A V+V      ++           +         I GI
Sbjct: 2   NFYAFDFET--ASYDKHSACSIAIVKV-ENSRIVDEFYTL---IKPETPFFWRNTQIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                +       E  ++I   F  PN  ++ +N                  D Y     
Sbjct: 56  HESDVVNAPK-FPEVWQQIQHCF-QPNRLVVAHNASFD------CSVLAGCLDYYGLEQP 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N    +  L  ++                    + KL  +     I   N HDA  D  A
Sbjct: 108 N----YLSLCTVKTSRKLF----------PEFPNHKLNTVCENLNITLNNHHDALEDSRA 153

Query: 184 TLALVWLIREK 194
              ++    ++
Sbjct: 154 CAEILLQQEQR 164


>gi|325271479|ref|ZP_08137997.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51]
 gi|324103369|gb|EGC00698.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51]
          Length = 236

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +   D+      V ++     I+  + F        L    +V I G+ P
Sbjct: 42  VVLDLETSGLNPNRDQVLSIGAVAIEDGA--IDFAQQFERTLQRPLLKTNASVLIHGLGP 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             AL  G   AE    +  F    ++ ++ ++       + + +  R   +S  +   + 
Sbjct: 100 S-ALAAGCEPAEALLDLLDFI--GDSPVLAFH-----APFDQRMLARALKESLGYRLQSP 151

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L  M        +               L D     G++    H A AD   T 
Sbjct: 152 FLDVAELAPMLNPDTVLREAG-------------LDDWVARFGLQVEERHHASADAQVTA 198

Query: 186 ALVWLIREKKPKL 198
            LV ++  +  + 
Sbjct: 199 ELVLILFSQARRQ 211


>gi|258623764|ref|ZP_05718722.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603]
 gi|258583961|gb|EEW08752.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603]
          Length = 209

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 51/196 (26%), Gaps = 22/196 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63
           +V  D ET   D         A  ++           EV  C P      D  +V I  I
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLCAPQS---LDSGSVRIHKI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q     G+ E E   ++  F    N  ++GY+                 +       +
Sbjct: 87  RHQDLQD-GLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIE 143

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+                   +      L  +     +   + HDA  D  A
Sbjct: 144 VSQIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPLQDKHDALQDAIA 188

Query: 184 TLALVWLIREKKPKLF 199
              +   + +     F
Sbjct: 189 AALVFVRLTKGDLPQF 204


>gi|150401941|ref|YP_001329235.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
 gi|150032971|gb|ABR65084.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
          Length = 189

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 14/189 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G +    + AQ + +  D     I+  E  + K         +A  + G++ 
Sbjct: 3   VFLDTETTGLEP--GQIAQISYIISDDDLN-IQKAENIYFKVNSMET---KAQSVHGLSI 56

Query: 66  Q--KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF--YDSYRWS 121
           +  + L DG    + + +I          I+  +N+ FD  +  + F R    YD  ++ 
Sbjct: 57  EKLELLSDGKSFTDHANQILDDIDQK---ILICHNVPFDYKFLNSEFVRCGIEYDPKKFC 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             N  +    +          P   +         S  L++     G      HD++ D 
Sbjct: 114 TMNHYTNLCGIPNPYRPGYKWPRLEETLDFLSIEKSEVLKNALNLFGNTTG-FHDSRFDS 172

Query: 182 YATLALVWL 190
                +   
Sbjct: 173 MGLFMIYKE 181


>gi|81428950|ref|YP_395950.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610592|emb|CAI55643.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 178

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 58/205 (28%), Gaps = 31/205 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   D     A V V    + ++           +         I GI
Sbjct: 2   NFVAMDFET--ANGQRDSACSIALVVVRND-QIVDQFYTL---IKPETYFSSRNSQIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      +    I  FF+     ++  +N  FD    R+           +   
Sbjct: 56  YEDDVAQAPK-FDQVWPHIAPFFT--PQKLVVAHNATFDIGVLRSTLQHYDIPEPHY--- 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L   R +Y                 + KL  L     I   N H+A AD   
Sbjct: 110 ---LALDTLTTSRRLY-------------PQFKNHKLNTLCTNLEIPLENHHNALADS-- 151

Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208
            +A   ++ ++  +          K
Sbjct: 152 -IACAKILIKEAQEFGTDPLKQVTK 175


>gi|150007459|ref|YP_001302202.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC
           8503]
 gi|298375435|ref|ZP_06985392.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|301310540|ref|ZP_07216479.1| exonuclease [Bacteroides sp. 20_3]
 gi|149935883|gb|ABR42580.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC
           8503]
 gi|298267935|gb|EFI09591.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|300832114|gb|EFK62745.1| exonuclease [Bacteroides sp. 20_3]
          Length = 192

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 26/199 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             + +D ET G     +   Q +G + +D      + +  F   P      + EA+ I  
Sbjct: 2   KLLFFDLETTGIKYWRNGVHQISGEIVIDG---VTKESFNFNVCPHPQCEIEEEALRICN 58

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVP--------NTCIIGYNNIRFDDYYSRNIFYRNF 114
           ++ ++         E   +     S             ++GYNN  FD+++ +       
Sbjct: 59  VSKEQIQAYP-PMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLK------- 110

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                +   NG++ +     + +I            +    T FK + +A A GI+  +A
Sbjct: 111 ----AFFVQNGDNYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSA 166

Query: 175 --HDAKADVYATLALVWLI 191
             HDA  D+  T  +   I
Sbjct: 167 KLHDASYDIQLTKEIYNRI 185


>gi|260557363|ref|ZP_05829578.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606]
 gi|260408989|gb|EEX02292.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606]
          Length = 459

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 289

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +  +      AE +  + ++        I  +N  FD  +    F R    
Sbjct: 290 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337


>gi|169796679|ref|YP_001714472.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter baumannii AYE]
 gi|184157414|ref|YP_001845753.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU]
 gi|213156097|ref|YP_002318517.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
           AB0057]
 gi|215484167|ref|YP_002326392.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           AB307-0294]
 gi|301344775|ref|ZP_07225516.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB056]
 gi|301510946|ref|ZP_07236183.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB058]
 gi|169149606|emb|CAM87496.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter baumannii AYE]
 gi|183209008|gb|ACC56406.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
 gi|213055257|gb|ACJ40159.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
           AB0057]
 gi|213985858|gb|ACJ56157.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           AB307-0294]
 gi|322507294|gb|ADX02748.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           1656-2]
 gi|323517313|gb|ADX91694.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 459

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 289

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +  +      AE +  + ++        I  +N  FD  +    F R    
Sbjct: 290 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337


>gi|329116348|ref|ZP_08245065.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           parauberis NCFD 2020]
 gi|326906753|gb|EGE53667.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           parauberis NCFD 2020]
          Length = 834

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 29/203 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             + + D E      A  +  Q   V V    +   + +                  +TG
Sbjct: 21  PKYAVIDLEATSAGTAA-KIIQVGIVIV-EGGKITNTYQT---DVNPHEDLSDHIKLLTG 75

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ Q+        ++ +  I         CI   +N++FD        +   ++      
Sbjct: 76  ISDQQLASAPE-FSQIAGTIFDLIKD---CIFVAHNVKFDANLLAEALFFEGFE------ 125

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R   +D +     F P   +          + L  L+    +E  +AH A AD  
Sbjct: 126 ----LRTPRVDTVELAQVFFPHLEK----------YNLTYLSTELNLELSDAHTAIADAM 171

Query: 183 ATLALVWLIREKKPKLFEYLYDY 205
           AT  L+ ++++K   L +    Y
Sbjct: 172 ATANLLLVLQDKIKSLPKESLAY 194


>gi|239503330|ref|ZP_04662640.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB900]
          Length = 459

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 289

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +  +      AE +  + ++        I  +N  FD  +    F R    
Sbjct: 290 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337


>gi|239831040|ref|ZP_04679369.1| exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823307|gb|EEQ94875.1| exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 214

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 28/192 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               ++ D ET G     DR      V+++   + +  +      P  D  P  EA  + 
Sbjct: 13  KKRVIVVDTETTGLLP-YDRIVTIGAVKIEGD-DFLHQSLHLIFDPRKDSHPQAEA--VH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G          +  ++ +  I ++F   +   I  +N  FD  Y +  F +   D     
Sbjct: 69  GYDNWMTRYQDL-FSDLAAPIRKWFDWADE--IVAHNADFDMRYVQREFRKAEVDML--- 122

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKAD 180
               +  +  ++  R I++                S KL D     G+      H A  D
Sbjct: 123 ---PHPVFCTMERSREIWSGQ--------------SAKLDDCLARIGLSRIGKRHGALED 165

Query: 181 VYATLALVWLIR 192
            Y T  L    R
Sbjct: 166 AYLTAGLYLHQR 177


>gi|149186517|ref|ZP_01864829.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21]
 gi|148829744|gb|EDL48183.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21]
          Length = 297

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 44/152 (28%), Gaps = 12/152 (7%)

Query: 7   IYDYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           I D ET G     D   + A +   V    E I                DP+   +TG+ 
Sbjct: 51  IVDTETTGLSAETDVIIELAIMLCFVGDNGEVIGHFGPVSWLQDPGQELDPKITLVTGLG 110

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q       +    +R +          +I  +N +FD  +      R + D    +W  
Sbjct: 111 AQHLKNQ-KINDTVARGLLD-----RADLIAAHNAKFDAGFIE----RRYPDLAGKAWAC 160

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT 156
             S  D L +     + S          D   
Sbjct: 161 SCSEIDWLKLGYEGRSQSALLAHAGWFSDAHR 192


>gi|145298879|ref|YP_001141720.1| DNA polymerase III subunit epsilon [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851651|gb|ABO89972.1| DNA polymerase III, epsilon subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 208

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 53/199 (26%), Gaps = 20/199 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  +  D+ET   D A         VR+               +       + ++V I G
Sbjct: 29  DELIALDFETTSLDPARAEIVSIGAVRIKGNRILTGEALSLRVQAPASL--NAQSVVIHG 86

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +  Q     G+      R++  F       ++GY+        +     +      +   
Sbjct: 87  LRHQDLQ-QGMRLEAALRQLLAFI--GPRELVGYHIAYDLRILNLACQKQWGLTLAQQGI 143

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +      D L               +    D      L  +     +  +  HDA +D  
Sbjct: 144 EVSRLYHDHL---------------YRRYPDAVIDLHLAAIRQHLNLPSLPVHDALSDAI 188

Query: 183 ATLALVWLIREKKPKLFEY 201
               +   + +  P  +  
Sbjct: 189 TAALIYLRLTQGGPLAYPK 207


>gi|145295430|ref|YP_001138251.1| hypothetical protein cgR_1367 [Corynebacterium glutamicum R]
 gi|140845350|dbj|BAF54349.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 197

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 51/196 (26%), Gaps = 20/196 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62
             +  D ET G      +      V +    + I+ +   +            +   I  
Sbjct: 14  KLLAVDVETTGLKPHRHQIVSIGWVPI--NGDVIDLSGAGYVVIRGSEGFSVGSSAVIHQ 71

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T  +    G+   +   ++ Q         +  +    +  +      ++F        
Sbjct: 72  LTDDEIA-AGIDIEDALGQLLQALQ---GRAMLAHFSPIERDFISAACLKHF-------- 119

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                   L+D              +P  +D     +L  +    G+ + + H A  D  
Sbjct: 120 -GTLLDVPLVDTFAMERRHMERMSTYPRGED----LRLARIRQRYGLPNYSNHQALTDAL 174

Query: 183 ATLALVWLIREKKPKL 198
           A   +  +        
Sbjct: 175 ACAEVYLVQITHLRAN 190


>gi|157736758|ref|YP_001489441.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315635934|ref|ZP_07891196.1| exonuclease [Arcobacter butzleri JV22]
 gi|157698612|gb|ABV66772.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315479913|gb|EFU70584.1| exonuclease [Arcobacter butzleri JV22]
          Length = 202

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 20/194 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + +V +D ET G +   D       V +           V F KP        EA+ + 
Sbjct: 29  KDEYVCFDCETTGLNPKKDDIISIGAVIIKDNTIISSKKFVKFIKPK--TKLQAEAIKVH 86

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I          ++        +F    N  ++GY         ++ +  +        +
Sbjct: 87  HIRECDLNNANDIDL-VIEEFLEFI--GNRTLVGYFLEFDISMINKYLKPKLGITLPNKT 143

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
            +      D                +      G    +   +     I  +  HDA  D 
Sbjct: 144 LEVSEIYHD---------------YKIEIIPQGHIDLRFNSIMEELEIPSLGKHDAFNDA 188

Query: 182 YATLALVWLIREKK 195
             T  +   ++   
Sbjct: 189 LMTAMIFIKLKNIA 202


>gi|160901638|ref|YP_001567219.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95]
 gi|160359282|gb|ABX30896.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95]
          Length = 187

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 29/189 (15%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F+  D+ET G +  L DR  + A +   D++     +          +     E      
Sbjct: 8   FLALDFETTGLNPELGDRIIEIAAIPIYDKKINFKYAFHTL---VNPNIFIPGEVSKFHK 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +  Q         +E   R  ++       II  +N++ D  +       +   S     
Sbjct: 65  LNNQDISNAP-SLSEVFPRFKEYIDDS---IIVSHNVKMDLRFLDIAAKESGMFSIDN-- 118

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                             +  D ++          + L+ L+    +     H A  D  
Sbjct: 119 ------------------YYIDTLEISKYYFDKGPYNLEFLSKKFNLGIKQFHRAWDDAL 160

Query: 183 ATLALVWLI 191
           +T  L    
Sbjct: 161 STAKLFQKY 169


>gi|332637276|ref|ZP_08416139.1| DNA-directed DNA polymerase III subunit epsilon [Weissella cibaria
           KACC 11862]
          Length = 177

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 61/205 (29%), Gaps = 31/205 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET             A V V      ++           +   D     I GI
Sbjct: 2   NFVAMDFET--ASAQRHSAVSMALVVVRDNI-LVDEFYTL---IKPESYFDARNTKIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +       E   +I QF++     ++  +N  FD+   R                
Sbjct: 56  TEADVVDAPK-FPEVWEQIKQFYTANQ--LVIAHNAPFDNGVLRETLGHYGI-------- 104

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  LD +R      P             + KL  +A A  I+  + H+A  D   
Sbjct: 105 -SAPHYLSLDTVRTSRKLYPQL----------PNHKLNTVADALQIDLKHHHNALDD--- 150

Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208
           T+A   ++  +  +          K
Sbjct: 151 TVAAARILVTQAEQFGVDPLKQLVK 175


>gi|300692079|ref|YP_003753074.1| oligoribonuclease [Ralstonia solanacearum PSI07]
 gi|299079139|emb|CBJ51807.1| oligoribonuclease [Ralstonia solanacearum PSI07]
          Length = 219

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60
           N+ V  D E  G     DR  + A V  D +   +    V      D+ L   +A     
Sbjct: 28  NNLVWLDMEMTGLSPENDRIIEVAVVVTDSELNVLAEGPVLVIHQPDEILDGMDAWNKGT 87

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    K       EA+    +  F       +   +  N+I  D  +      +   
Sbjct: 88  HGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEA 147

Query: 116 DSYRW 120
             +  
Sbjct: 148 YFHYR 152


>gi|283832758|ref|ZP_06352499.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220]
 gi|291072441|gb|EFE10550.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220]
          Length = 220

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-VDGKIVNPMSNL---VRPDRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +   + +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DIIPQYY------GSDWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+      P           +    +Q  A  +       H A  D Y T  
Sbjct: 97  -----ICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPAGLHH------HRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI   +   +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMQTSGW-----------TAEQMVDITGRPALLTT--FTFGKYRGKPVSEVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|256370678|ref|YP_003108503.1| putative bifunctional DNA polymerase III subunit alpha/DNA
           polymerase III subunit epsilon [Candidatus Sulcia
           muelleri SMDSEM]
 gi|256009470|gb|ACU52830.1| putative bifunctional DNA polymerase III, alpha subunit (DnaE)/DNA
           polymerase III, epsilon subunit (DnaQ) [Candidatus
           Sulcia muelleri SMDSEM]
          Length = 1406

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 77/249 (30%), Gaps = 23/249 (9%)

Query: 5   FVIYDYETFGRDVALDRPA-------QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           ++I+D ET G     + P        + +    D   + I   + +  KP    +P   +
Sbjct: 2   YIIFDTETTGLPKNYNAPIINWPRLVRLSWCLYDENLKLI-ELKDYIIKPEGFEIPF-NS 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             I GI+ ++AL  G        + +    + N+  +  +NI FD       F R     
Sbjct: 60  TKIHGISTEEALEKGYKRNFVLEKFN--IRIKNSKFLIGHNIYFDLKVLCAEFIRLKKIH 117

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           Y +              +      S +               L +L      +   AHD+
Sbjct: 118 YLYKKK-----------IIDTKEKSINFCAIKIGKGKLKWPTLTELYKKLFNDTFIAHDS 166

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
           K+DV AT    + +      +     + +      K I++  +         F       
Sbjct: 167 KSDVLATSKCFFELLRI-GIISLKNVNKKLLKINIKKINLSKIQNFNFKKLNFEKKLFKK 225

Query: 238 ALIAPVAWH 246
              + +  H
Sbjct: 226 KYFSHIHNH 234


>gi|154343419|ref|XP_001567655.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134064987|emb|CAM43098.1| exonuclease-like protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 292

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 54/230 (23%), Gaps = 46/230 (20%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--------RVDRQW----------------------- 34
           V+ D ET G     D   +   V        R                            
Sbjct: 53  VVVDLETTGFSPTADEILEVGCVELRWTPSSRTTLTGPKDADPCAPPLEKQGSCGVLEGL 112

Query: 35  -EKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCI 93
             +       + +P+        A  + GIT +K           +  +  + ++     
Sbjct: 113 WTRGGRVFHRYVRPSHPRRITAAATAVHGITWEKVQHC-APWPVVASELVAYMTLIRADA 171

Query: 94  IGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS-------PDGI 146
           +   +++ +          +            ++R+    + R  Y              
Sbjct: 172 LFTKSVQVEAAQHGGHSAVHL-PPLVAHNALFDARFLAHHLQRCGYQIFWHPQYPLTCTR 230

Query: 147 QWPSRDDGATSFKLQDLALANGIE-----HVNAHDAKADVYATLALVWLI 191
           QW        +  L  L     I+       N H A  D   T  L   +
Sbjct: 231 QWAQVAYPHLANNLDTLCAFLSIDGAADRATNGHGALTDATLTALLFLRM 280


>gi|259908542|ref|YP_002648898.1| ribonuclease T [Erwinia pyrifoliae Ep1/96]
 gi|224964164|emb|CAX55671.1| Ribonuclease T [Erwinia pyrifoliae Ep1/96]
 gi|283478503|emb|CAY74419.1| ribonuclease T [Erwinia pyrifoliae DSM 12163]
          Length = 219

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A V  ++D     + + T  F  +P    +  PEA+   G
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDDTLHFHVEPFAGSVLLPEALTFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  ++  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +       +                     A     +   AH 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLAKACH-----------------AAGMAFDSAQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 183 ALYDTLQTADLFCELVNR 200


>gi|315127223|ref|YP_004069226.1| ribonuclease T [Pseudoalteromonas sp. SM9913]
 gi|315015737|gb|ADT69075.1| ribonuclease T [Pseudoalteromonas sp. SM9913]
          Length = 224

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 72/225 (32%), Gaps = 30/225 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +   D     I+ T  F  +P +    +  A+   G
Sbjct: 19  VVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIEFNG 78

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P  ALR  V E E  + I +              ++  +N  FD  +      RN   
Sbjct: 79  IEPFSALRGAVPEEEAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERN--- 135

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
           + + +  +    +D   +                         L     A GIE  N  A
Sbjct: 136 NIKRTPFHPFVSFDTTSLA----------------GLALGQTVLAKACRAAGIEFDNKQA 179

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           H A  D   T  L  LI  +  +L  +        Q    +  Q+
Sbjct: 180 HSALYDTERTAELYCLIVNRWQQLGGWPLAIDETQQNEDEVSNQD 224


>gi|189465280|ref|ZP_03014065.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM
           17393]
 gi|189437554|gb|EDV06539.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM
           17393]
          Length = 164

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 53/190 (27%), Gaps = 28/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V R  E +++      +P  +Y        + 
Sbjct: 1   MENFAAIDFET--ANEQRTSVCSVGVVIV-RDGEIVDNYYSLI-RPEPEY-YSYWNTRVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T        V      + I           +  +N  FD+   +              
Sbjct: 56  GLTLADTAEAPV-FPVVWQEIAPLIE---GLPLVAHNKGFDESCLKA------------- 98

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +    +    Y F         R  G  S++L  +A   G E    H A AD 
Sbjct: 99  ------VFKTYCLDYPDYEFHCTLSTARRRIKGLPSYQLHTVAAYVGYELEQHHHALADA 152

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 153 EACAWIAREI 162


>gi|169633080|ref|YP_001706816.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter baumannii SDF]
 gi|169151872|emb|CAP00707.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter baumannii]
          Length = 459

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 289

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +  +      AE +  + ++        I  +N  FD  +    F R    
Sbjct: 290 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337


>gi|332076082|gb|EGI86548.1| exonuclease family protein [Streptococcus pneumoniae GA41301]
          Length = 140

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V+ D E      +  +  Q   V +    E ++               D     +TG
Sbjct: 6   NRYVVVDLEATSTG-SKAKIIQVGIVVI-EDGEIVDHYTT---DVNPHEPLDAHIKELTG 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           +T Q+  +     ++ +R+I          I   +N++FD        +   Y+
Sbjct: 61  LTDQRLAQAP-DFSQVARKIFDLVEDG---IFVAHNVQFDANLLAENLFFEGYE 110


>gi|300934269|ref|ZP_07149525.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM
           45100]
          Length = 225

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 19/185 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
            +  D ET G D   DR      + VD    +I+ +   +     +      E+  I G+
Sbjct: 43  LLAVDVETTGLDSRKDRLLSIGWIPVD--GHEIDLSGAGYGVIEQETHETVGESATIHGL 100

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T     R+G    E   R+ Q         +  +  + +  +  +    +F         
Sbjct: 101 TDDHVHREGEAAPEVLARLLQALR---GRAMLVHYKKVESTFISDACQDHF--------- 148

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               +   +D +     F  DG   P  DD     +L  +     +   + H+A  D  A
Sbjct: 149 GTGLKAQYVDTLELARRFIEDGGGHPKGDD----LRLARIRERLELPSYHNHNALTDALA 204

Query: 184 TLALV 188
              + 
Sbjct: 205 CAEVY 209


>gi|294675436|ref|YP_003576052.1| exonuclease [Prevotella ruminicola 23]
 gi|294473646|gb|ADE83035.1| exonuclease [Prevotella ruminicola 23]
          Length = 163

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 28/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V R  E +++      +P  +Y  +     + 
Sbjct: 1   MRDFAAIDFET--ANNERTSVCSVGVVIV-RNGEIVDTFYSLI-QPEPNY-YNYWCSQVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ +      V   E  ++I       +   +  +N  FD+   + +F     D     
Sbjct: 56  GLSREDTEDAPV-FPEVWKQIEPLI---DGLPLVAHNKSFDESCLKAVFRCYQMD----- 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                            Y F    +          + +L  ++   G    N H A AD 
Sbjct: 107 --------------YPDYPFYCTCVASRKAFPQLPNHQLHTVSEYCGYHLENHHHALADA 152

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 153 EACAWIAREI 162


>gi|197121230|ref|YP_002133181.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K]
 gi|196171079|gb|ACG72052.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K]
          Length = 206

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 52/190 (27%), Gaps = 12/190 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +   D ET G D   D       V V     ++  +     +P      DP ++    + 
Sbjct: 19  YWALDLETGGLDPRRDAILAVGMVPVRLGSVRLGESFSTLIRPEATAAIDPGSIRAHQLV 78

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P        +++  +       +     ++  +    D  + +  + R            
Sbjct: 79  PHDVASAPSLDSVLADV--DVRAREGALLV--HQASLDVAFLKRAYQRCGRRWP------ 128

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + ++             P          L       G+     HDA  D  AT
Sbjct: 129 DPPVVDTVALLIKAAKRQRFVD--PDAPAIEPELNLLAARRRRGLPDYGQHDALTDAVAT 186

Query: 185 LALVWLIREK 194
             L  ++R +
Sbjct: 187 AELFLVLRRQ 196


>gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 405

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 34/228 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + ++ +D ET   +   DR   +AG+ +    E I++          +   D     +T
Sbjct: 109 PDTYIAFDVET--PNKNNDRI-SYAGILLVCNGEIIKNYSTL---INPETRFDHFNTVLT 162

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI             E+   I   F      +I  +N  FD                   
Sbjct: 163 GIDASAVCHAP-TFKEYWPSIEDLFKK---YVIIAHNANFDLSVLSKTLLHYGLK----- 213

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     +  ++ +  ++    ++P        + L+ +A    I   N HDAK+D 
Sbjct: 214 ----------VPPIKYVCTYNESRNKFPQLGK----YSLKSMAEYFDIPLENHHDAKSDA 259

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
               ++   I+ +        +++       +     N++P  +V   
Sbjct: 260 QVCSSIFEAIKSQNYMFTPKEFEFH-----EEKTSEFNISPATNVETF 302


>gi|157414745|ref|YP_001482001.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385709|gb|ABV52024.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747384|gb|ADN90654.1| DNA polymerase III, epsilon subunit [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931109|gb|EFV10083.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 253

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  V+     +   V++ +  ++I   + F  K  +          +TGIT
Sbjct: 72  FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+       F       I   +N+RFD  +         +         
Sbjct: 126 YEMVENAP-SLAKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   ++  +                  +  +KL+ L    G+E+ + H A  D  A 
Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220

Query: 185 LALVWLI 191
             +    
Sbjct: 221 AEIFKYC 227


>gi|28867700|ref|NP_790319.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28850935|gb|AAO54014.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 237

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     +            D+   P AV I G+ P
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKLSP-AVLIHGLAP 101

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E      +F    ++ I+G++   FD +        +     + ++ + 
Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLARALKESLDYRLQHAFFDA 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +L                           L D     G+     H+A AD   T 
Sbjct: 158 AEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVTA 200

Query: 186 ALVWLIREKKPKL 198
            L  ++     + 
Sbjct: 201 ELALILFSHARRQ 213


>gi|153949552|ref|YP_001400734.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758]
 gi|166991091|sp|A7FHK6|RNT_YERP3 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|152961047|gb|ABS48508.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758]
          Length = 215

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V +    E     + T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    LA     +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LAAGIPFDSSQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 183 ALYDTLQTAKLFCELVNR 200


>gi|51596620|ref|YP_070811.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953]
 gi|81825791|sp|Q66A36|RNT_YERPS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|51589902|emb|CAH21534.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953]
          Length = 215

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V +    E     + T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    LA     +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LAAGIPFDSSQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 183 ALYDTLQTAKLFCELVNR 200


>gi|22125847|ref|NP_669270.1| ribonuclease T [Yersinia pestis KIM 10]
 gi|45441960|ref|NP_993499.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001]
 gi|149365707|ref|ZP_01887742.1| ribonuclease T [Yersinia pestis CA88-4125]
 gi|218929473|ref|YP_002347348.1| ribonuclease T [Yersinia pestis CO92]
 gi|229837906|ref|ZP_04458065.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895067|ref|ZP_04510244.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A]
 gi|229898469|ref|ZP_04513615.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902309|ref|ZP_04517429.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516]
 gi|24638167|sp|Q8ZE08|RNT_YERPE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21958778|gb|AAM85521.1|AE013798_8 RNase T, degrades tRNA [Yersinia pestis KIM 10]
 gi|45436823|gb|AAS62376.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001]
 gi|115348084|emb|CAL21010.1| ribonuclease T [Yersinia pestis CO92]
 gi|149292120|gb|EDM42194.1| ribonuclease T [Yersinia pestis CA88-4125]
 gi|229680644|gb|EEO76740.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516]
 gi|229688513|gb|EEO80583.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694272|gb|EEO84319.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701955|gb|EEO89977.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A]
 gi|320015036|gb|ADV98607.1| ribonuclease T [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 215

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V +    E     + T  F  +P +     PEA+   G
Sbjct: 20  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    LA     +   AH 
Sbjct: 140 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LAAGIPFDSSQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 183 ALYDTLQTAKLFCELVNR 200


>gi|108807723|ref|YP_651639.1| ribonuclease T [Yersinia pestis Antiqua]
 gi|108811999|ref|YP_647766.1| ribonuclease T [Yersinia pestis Nepal516]
 gi|162420848|ref|YP_001606979.1| ribonuclease T [Yersinia pestis Angola]
 gi|165926445|ref|ZP_02222277.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938652|ref|ZP_02227208.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010664|ref|ZP_02231562.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211013|ref|ZP_02237048.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167400761|ref|ZP_02306267.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167422151|ref|ZP_02313904.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167424940|ref|ZP_02316693.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|270490511|ref|ZP_06207585.1| ribonuclease T [Yersinia pestis KIM D27]
 gi|294503612|ref|YP_003567674.1| ribonuclease T [Yersinia pestis Z176003]
 gi|108775647|gb|ABG18166.1| RNAse T [Yersinia pestis Nepal516]
 gi|108779636|gb|ABG13694.1| RNAse T [Yersinia pestis Antiqua]
 gi|162353663|gb|ABX87611.1| ribonuclease T [Yersinia pestis Angola]
 gi|165913526|gb|EDR32147.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921666|gb|EDR38863.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990366|gb|EDR42667.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166208193|gb|EDR52673.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166958963|gb|EDR55984.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049614|gb|EDR61022.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056127|gb|EDR65905.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|262361655|gb|ACY58376.1| ribonuclease T [Yersinia pestis D106004]
 gi|262365605|gb|ACY62162.1| ribonuclease T [Yersinia pestis D182038]
 gi|270339015|gb|EFA49792.1| ribonuclease T [Yersinia pestis KIM D27]
 gi|294354071|gb|ADE64412.1| ribonuclease T [Yersinia pestis Z176003]
          Length = 226

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V +    E     + T  F  +P +     PEA+   G
Sbjct: 31  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    LA     +   AH 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LAAGIPFDSSQAHS 193

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 194 ALYDTLQTAKLFCELVNR 211


>gi|145598067|ref|YP_001162143.1| ribonuclease T [Yersinia pestis Pestoides F]
 gi|170024107|ref|YP_001720612.1| ribonuclease T [Yersinia pseudotuberculosis YPIII]
 gi|145209763|gb|ABP39170.1| RNAse T [Yersinia pestis Pestoides F]
 gi|169750641|gb|ACA68159.1| ribonuclease T [Yersinia pseudotuberculosis YPIII]
          Length = 226

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V +    E     + T  F  +P +     PEA+   G
Sbjct: 31  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    LA     +   AH 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LAAGIPFDSSQAHS 193

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 194 ALYDTLQTAKLFCELVNR 211


>gi|212634795|ref|YP_002311320.1| exonuclease [Shewanella piezotolerans WP3]
 gi|212556279|gb|ACJ28733.1| Exonuclease [Shewanella piezotolerans WP3]
          Length = 225

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 20/185 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D E  G +V  D+      V +     +++  +              ++  I GI   +
Sbjct: 45  IDLEMTGLNVQFDQILSIGMVPIQNGMLQLKDADYRLVSIEGSV---GDSAAIHGIVDGQ 101

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                +   E     H F       ++  ++   D  + +   +R F +           
Sbjct: 102 LETA-ISANEAM---HWFLEKTKGHVLIAHHAPLDLCFLKAEIFRCFGE------KMTFV 151

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D + + RA      + I+         S +L       G+    AH+A  D  +   L
Sbjct: 152 SIDTMSLERARILRQHEVIK-------EGSLRLDACRSRYGLPIYAAHNAAVDALSCGEL 204

Query: 188 VWLIR 192
           +    
Sbjct: 205 LLAQM 209


>gi|330954936|gb|EGH55196.1| exonuclease [Pseudomonas syringae Cit 7]
          Length = 237

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     +            D+   P AV I G+ P
Sbjct: 44  VVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E      +F    ++ I+G++   FD +        +     +  + + 
Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHPFFDA 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +L                           L D     G+     H A AD   T 
Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEERHHASADALVTA 200

Query: 186 ALVWLIREKKPKL 198
            L  ++     + 
Sbjct: 201 ELALILFSHARRQ 213


>gi|186895675|ref|YP_001872787.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+]
 gi|186698701|gb|ACC89330.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+]
          Length = 226

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V +    E     + T  F  +P +     PEA+   G
Sbjct: 31  VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +           N  II  +N  FD  +      R    
Sbjct: 91  IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    LA     +   AH 
Sbjct: 151 RNPFHPFATFDTAALSGLVLGQTVLAKAC-----------------LAAGIPFDSSQAHS 193

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 194 ALYDTLQTAKLFCELVNR 211


>gi|126641104|ref|YP_001084088.1| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
          Length = 459

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 289

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +  +      AE +  + ++        I  +N  FD  +    F R    
Sbjct: 290 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337


>gi|307106672|gb|EFN54917.1| hypothetical protein CHLNCDRAFT_134628 [Chlorella variabilis]
          Length = 786

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 6/88 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G         +F  V          +   + C      + DPEA   TG+T 
Sbjct: 30  VAFDLETSGLGKKAC-ITEFGAVGAGG----TATFHEYVC-LPPGVVMDPEATKTTGLTA 83

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCI 93
           +    +G    E   R   F       +
Sbjct: 84  EFLAENGRPFEEAYPRFVSFLRQQRPDV 111


>gi|78485464|ref|YP_391389.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2]
 gi|78363750|gb|ABB41715.1| Exonuclease [Thiomicrospira crunogena XCL-2]
          Length = 207

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 57/187 (30%), Gaps = 20/187 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G +   DR    + +++     ++ ++E        +     E++ I  I  
Sbjct: 32  VCFDCETTGLNPRKDRIVSLSAIKIR--GNEVLTSEALNLTFVQEAAISEESIKIHWIRN 89

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +   + G+ E E       F    +  ++GY         ++ I                
Sbjct: 90  ED-TKAGLSEQEGIEAFLHFI--GSRPLVGYYLEFDVAMVNQIIKPWLGI---------- 136

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L   +   +      +               +     + ++  HDA +D + T 
Sbjct: 137 -----TLPNAQIEVSSRYYDYKEEIIPKKIIDLTFDAILKDLELPNLGQHDAFSDAFMTS 191

Query: 186 ALVWLIR 192
            +   ++
Sbjct: 192 LIYIKLK 198


>gi|323358024|ref|YP_004224420.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
 gi|323274395|dbj|BAJ74540.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
          Length = 405

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 48/177 (27%), Gaps = 30/177 (16%)

Query: 1   MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   F + D ET G      DR  + A V V          E     P  D      A  
Sbjct: 1   MGRGFAVIDLETTGLFPQKHDRIVEVAIVHVSPAGVVEGVWETL-VNPMRDM----GAQR 55

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GI+   A R     +  +  I          +   +N  FD  +  +           
Sbjct: 56  IHGISAAAAARAPE-FSALAPSIASLLR---GRVPVAHNASFDARFLAHSMEHAGLACPD 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
            ++         +  M+    F               +  L D + A G    NAH 
Sbjct: 112 LAY--------WMCTMQLAGTFLQ------------GNRSLADCSAAIGYAMQNAHR 148


>gi|261210416|ref|ZP_05924710.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260840474|gb|EEX67040.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 209

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 55/195 (28%), Gaps = 20/195 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET   D         A  ++     +I +++ F  +       D  +V I  I 
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIID--NRILTSQPFEVRLCAPQSLDSGSVRIHKIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q     G+ E E   ++  F    N  ++GY+                 +       + 
Sbjct: 88  HQDLQD-GLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+                   +      L+ +     +   + HDA  D  A 
Sbjct: 145 SQIYHDKLEK---------------HLPNAYFDLSLEAICRHLDLPLQDKHDALQDAIAA 189

Query: 185 LALVWLIREKKPKLF 199
             +   + +     F
Sbjct: 190 ALVFVRLTKGDLPQF 204


>gi|319951547|ref|ZP_08025351.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
 gi|319434795|gb|EFV90111.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
          Length = 231

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 8/110 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N  + +D ET G D         A + +D   ++  +                 A  + G
Sbjct: 14  NRLLAFDLETTGPDPRTAHVVTSALIEIDGPHKRERNWLA-----DPGIEIPEGATDVHG 68

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
           IT   A   G   AE      +           ++ +N         R  
Sbjct: 69  ITTAHAREHGRPHAEVIAETVEAIRQGWRDGRTLVVFNACYDLTILRRWH 118


>gi|224541140|ref|ZP_03681679.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525949|gb|EEF95054.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM
           15897]
          Length = 297

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 34/213 (15%)

Query: 1   MTNHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+    I+D E    ++  D         V +    +  E+       P      DP   
Sbjct: 1   MSEKITIFDIE----ELNNDPVSVCSIGIVVL-EDMKVKETFYSLIRPPK--LTFDPYRY 53

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +  I PQ   +      E   +I ++F      I+  ++I+ D  +   +F R      
Sbjct: 54  KVHKIRPQDLKKQP-TFPEIWPKISKYFENS---IVISHDIQSDLNHLLAVFRR------ 103

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              +        L   +     F P+  +          + L  L     ++  NAH+A 
Sbjct: 104 ---FRIRKPTCYLSCTLVLAKLFHPELQK----------YGLGSLCDFYSVDLENAHNAL 150

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
           AD  A   L+  + E+    +  L +   K  +
Sbjct: 151 ADSLACAELLKKMMEEHH--YTSLKELHEKENV 181


>gi|320668677|gb|EFX35482.1| ribonuclease T [Escherichia coli O157:H7 str. LSU-61]
          Length = 215

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 59/200 (29%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + + T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDITLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I+  +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|282864201|ref|ZP_06273257.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp.
          ACTE]
 gi|282560688|gb|EFB66234.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp.
          ACTE]
          Length = 241

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 10/91 (10%)

Query: 5  FVIYD-------YETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             +D        ET G DV  DR    A V  D          V     +        A
Sbjct: 2  IHWFDGPLAAFGTETTGADVEEDRIVSAALVIQDTTG---GRFRVTRWLVSPGIPVPAGA 58

Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSV 88
            I G+T     R+G   A     + +  + 
Sbjct: 59 TEIHGLTDDHLQRNGRWPAPVMEELARALAE 89


>gi|242077240|ref|XP_002448556.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor]
 gi|241939739|gb|EES12884.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor]
          Length = 283

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 57/208 (27%), Gaps = 27/208 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+++D ET G     +R  +FA    D           F      +      A  +  I
Sbjct: 84  TFLVFDLETTGFFHVDNRIVEFA--LRDLSG---GKDCTFQTLINPERDVPIYASELNNI 138

Query: 64  TPQKALRDGVV-EAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYDS 117
           T +   R  V   ++    +  +             I +N   FD  +    F R     
Sbjct: 139 TTELVCRPDVPRFSDVLPILLAYVRSRQAPGKPVLWIAHNAKGFDVPFLNQEFDRC---- 194

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176
                 +     D L + R          +    D       L  L    G      +H 
Sbjct: 195 -SAQVPSDWLFVDSLRLAR----------KLKKIDGKKNLVNLVALGERYGLSSEGPSHR 243

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204
           A  DV A   ++  I        + L +
Sbjct: 244 AMPDVEALCNILPKITLDLKLTCDDLMN 271


>gi|172040446|ref|YP_001800160.1| hypothetical protein cur_0766 [Corynebacterium urealyticum DSM
           7109]
 gi|171851750|emb|CAQ04726.1| hypothetical protein cu0766 [Corynebacterium urealyticum DSM 7109]
          Length = 239

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 56/202 (27%), Gaps = 29/202 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRV--------DRQWEKIESTEVFFCKPADDYLPDPE 56
            +  D ET G D   D       V +        +  +  I        +         E
Sbjct: 43  LLAVDVETTGLDPKKDLILSIGWVPMTGGRIFPAEADYAVIHHEPEVVERVPAGM----E 98

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           +  I GIT       G    +   R+           +  +    +  +      ++F  
Sbjct: 99  SAKIHGITHTDI-EAGEPLRDVLSRLLLALR---GRAMVVHFSPIETQFLGQACRQHF-- 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                         ++D       +      +P  +D     +L  +    G+ H  +H+
Sbjct: 153 -------GSGLSVSVIDTFAIERRYFERMATYPRGED----LRLPRVRERYGLPHYGSHN 201

Query: 177 AKADVYATLALVWLIREKKPKL 198
           A +D  A   L+  + + +   
Sbjct: 202 ALSDALACGELLLAMLKYERNN 223


>gi|34498401|ref|NP_902616.1| DNA polymerase III subunit epsilon [Chromobacterium violaceum ATCC
           12472]
 gi|34104255|gb|AAQ60614.1| probable DNA polymerase III [Chromobacterium violaceum ATCC 12472]
          Length = 202

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 20/187 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET   +V+         V++     +I  +E  +     D +P    + + G+  + 
Sbjct: 33  LDCETTSLNVSEAELLSVGAVKLRGD--RILHSEALYLLVKPDSVPSAGNIAVHGLRRRD 90

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
              +G+   E   R+  F       ++GY         ++ +         +   +    
Sbjct: 91  LA-EGLPAREAVSRLLAFI--GGRPLLGYYLEYDVAVLNKYVKPWLGIGLPQRQIELSAR 147

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
            +D                ++  R D      L  L    G+  +  HDA  D  +   L
Sbjct: 148 YYD---------------YRFRQRPDSHIDLSLDALHRELGVPALPRHDALNDALSAAML 192

Query: 188 VWLIREK 194
              +R +
Sbjct: 193 YQALRRR 199


>gi|207092434|ref|ZP_03240221.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 160

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 10/97 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
           F   D ET G         +   V+V +  E I   E     K   DY+       +TGI
Sbjct: 73  FSFIDLETTGSCPIKHEILEIGAVQV-KGGEIINRFETLVKVKSVPDYI-----AELTGI 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100
           T +  L       E  + +  F    N+  + +N   
Sbjct: 127 TYEDTLNAPSAH-EALQELRLFL--GNSVFVAHNANF 160


>gi|71738029|ref|YP_276841.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558582|gb|AAZ37793.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320326412|gb|EFW82465.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076]
          Length = 237

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     +            D+   P AV I G+ P
Sbjct: 44  VVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E      +F    ++ I+G++   FD +        +     +  + + 
Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHPFFDA 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +L                           L D     G+     H A AD   T 
Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEERHHASADALVTA 200

Query: 186 ALVWLIREKKPKL 198
            L  ++     + 
Sbjct: 201 ELALILFSHARRQ 213


>gi|220926351|ref|YP_002501653.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219950958|gb|ACL61350.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 296

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 59/240 (24%), Gaps = 32/240 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +I D ET G D A D   +   +                F            E   +TGI
Sbjct: 42  LILDTETTGLDPAADEVIELGIIAFTYGPSGRIHRVRHRFNQLQQPARPIPEEVTRLTGI 101

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                R  +  +     +I +N                  +       
Sbjct: 102 TDADVAG-----RRIDDRAVEALAARARVVIAHNARFDRRMCEARWPVFAGLNW------ 150

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                             +    Q P R++G  + +L  L   +G  H N H A  D  A
Sbjct: 151 ------------------ACSCHQIPWREEGHEAARLGGLLADHGYFH-NGHRAIDDCEA 191

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
            L L+    ++  +L         +    +L        L           S+      +
Sbjct: 192 LLWLLARPLKRSGRLALATLMEAARRPTVRLWASDAPFALKDRLKDRNYRWSSRRRCWYI 251


>gi|70726060|ref|YP_252974.1| hypothetical protein SH1059 [Staphylococcus haemolyticus JCSC1435]
 gi|68446784|dbj|BAE04368.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 52/197 (26%), Gaps = 30/197 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M N F+  D+ET   +           V+V    E +ES                  + +
Sbjct: 37  MGNAFIALDFET--ANGKRTSICSVGMVKV-VNNEIVESFYTL---VNPFDYFSQTNIEV 90

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GITP+  +     E              +   +  +N  FD         +   ++   
Sbjct: 91  HGITPEDVIDAPSFEY----VFPYMMQFIDKLPVVAHNAAFDMNVLHQSLKQLNIETPSM 146

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                                     Q   R   A  + L+ L     ++    HDA  D
Sbjct: 147 --------------------IYFCSYQLAKRTIDAYRYGLKHLMKHYKLDFHGHHDALND 186

Query: 181 VYATLALVWLIREKKPK 197
             A   + + + +    
Sbjct: 187 AKACAMITFRLLKHYDN 203


>gi|220907840|ref|YP_002483151.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
 gi|219864451|gb|ACL44790.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7425]
          Length = 164

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 31/186 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   + A +       VRV    + ++      C P   +    E   I 
Sbjct: 1   MTSFVAIDFET--ANRAKESACAVGLVRV-ENLQIVQKAYYLICPPQPHF----EFTHIH 53

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI             +    +H   +   T  I  +N  FD                  +
Sbjct: 54  GIRWTDVAAQP-TFGDLWSELHPLIA--GTDFIAAHNAGFDRSVLHACCNSYGIPRPAQN 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +         + + R  ++  P               KL D+    G+E  + H A +D 
Sbjct: 111 F------ICTVQLARRTWSLYPT--------------KLPDVCRFLGLELDHHH-ALSDA 149

Query: 182 YATLAL 187
            A   +
Sbjct: 150 EACAQI 155


>gi|332852350|ref|ZP_08434135.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013150]
 gi|332870148|ref|ZP_08439060.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013113]
 gi|332875093|ref|ZP_08442929.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6014059]
 gi|332729293|gb|EGJ60634.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013150]
 gi|332732415|gb|EGJ63671.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013113]
 gi|332736710|gb|EGJ67701.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6014059]
          Length = 497

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 272 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 327

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +  +      AE +  + ++        I  +N  FD  +    F R    
Sbjct: 328 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 375


>gi|258545959|ref|ZP_05706193.1| ribonuclease T [Cardiobacterium hominis ATCC 15826]
 gi|258518837|gb|EEV87696.1| ribonuclease T [Cardiobacterium hominis ATCC 15826]
          Length = 212

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 64/199 (32%), Gaps = 30/199 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62
           V+ D ET G D   D   + A V V  D       +  + +   P      DPEA+ ITG
Sbjct: 16  VVIDVETGGFDAKKDALLELAAVLVNFDENQRLCRTHTIHYHIHPFPGANIDPEALKITG 75

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR    E + + R                 I+  +N  FD  +   +  R  Y 
Sbjct: 76  IDPYHPLRPAYHEDKAAERFFDEIRAYQKQQECTRSILVGHNATFDLGFINALAERTDYK 135

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    + +LD +          +             L  +A   G E+    A
Sbjct: 136 ------RNPFHPFSVLDTVSLGALAYGQTV-------------LARIARQGGFEYDSSKA 176

Query: 175 HDAKADVYATLALVWLIRE 193
           H AK D   T  +   I  
Sbjct: 177 HGAKYDAELTADIFCHIVN 195


>gi|184200651|ref|YP_001854858.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
 gi|183580881|dbj|BAG29352.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
          Length = 193

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 58/188 (30%), Gaps = 25/188 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F   D+ET   + +L        VRV R  + +++       PA     +P  V I
Sbjct: 1   MPVSFTAIDFET--ANRSLASACALGVVRV-RDGQVVDTRYSLIRPPAGHDAFEPGNVRI 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            GI P +              + +  +      ++  +N  FD    +        D   
Sbjct: 58  HGIRPAEVTHAP-TFDRLWDWMCENITPEDPDAVLVAHNAVFDTGVVKAANRACGRDP-- 114

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                    WD    +R   A                S+ L   + A G E  + H+A +
Sbjct: 115 -------RPWDYACTLRLARAAY-----------TLRSYALPSASRAAGAEVEDHHNALS 156

Query: 180 DVYATLAL 187
           D  A   +
Sbjct: 157 DALACAGI 164


>gi|123441273|ref|YP_001005260.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088234|emb|CAL11023.1| DNA polymerase III, epsilon chain [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 238

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 63/227 (27%), Gaps = 29/227 (12%)

Query: 14  GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGV 73
           G      +  +   V V            F      D L DPEA  + GI+ +       
Sbjct: 5   GVHYEGHKIIEIGAVEV-INRRLTGR--NFHVYIKPDRLVDPEAYGVHGISDEFLADKP- 60

Query: 74  VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLD 133
             A+ +    +F       I   +N  FD  +    F     D  +       +  D L 
Sbjct: 61  TFADITPEFLEFIRGAELII---HNAAFDIGFMDYEFRMLQQDIPKTE--TFCTITDSLL 115

Query: 134 VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLI 191
           + R ++                    L  L     I++     H A  D      +   +
Sbjct: 116 LARRLFPG--------------KRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAM 161

Query: 192 REKKPKLFEYL----YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
              +  L   +        +   ++++    +   +++ +    A+ 
Sbjct: 162 TGGQTSLSFSMEGDQTQNESSEDIQRITRPASGLKIIYATEDEIAAH 208


>gi|300722831|ref|YP_003712123.1| RNase T [Xenorhabdus nematophila ATCC 19061]
 gi|297629340|emb|CBJ89939.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Xenorhabdus nematophila ATCC 19061]
          Length = 211

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D     +   T  F   P +    DP A+  TG
Sbjct: 12  VVIDVETAGFNARTDALLEIAAITLKMDENGWLMPADTLHFHVDPFEGANLDPAALAFTG 71

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E      I +           N  I+  +N  FD  +      R+   
Sbjct: 72  IDPTNPLRGAVSEYTALHAIFKMIRKGMKDTNCNRAIMVAHNASFDHNFVMAAAERSGLK 131

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +      +   AH 
Sbjct: 132 RIPFHPFATFDTAALSGLVLGQTILAKAC-----------------ITAEIPFDSDQAHS 174

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 175 ALYDTDRTALLFCELVNR 192


>gi|148545634|ref|YP_001265736.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
 gi|148509692|gb|ABQ76552.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
          Length = 236

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +   D+      V ++     I+  + F             +V I G+ P
Sbjct: 42  VVLDLETSGLNPNRDQVLSIGAVAIEDGA--IDFAQQFERTLHRPLQKTNASVLIHGLGP 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             AL  G   AE    +  F    N+ ++ ++       + + +  R   ++      + 
Sbjct: 100 S-ALAAGCDPAEALLDLLDFI--GNSPVLAFH-----APFDQRMLARALKETLGHRLQSM 151

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L  M        +               L D     G++    H A AD   T 
Sbjct: 152 FLDVAELAPMLNPDTVLREAG-------------LDDWVARFGLQVEERHHASADAQVTA 198

Query: 186 ALVWLIREKKPKL 198
            L  ++  +  + 
Sbjct: 199 ELALILFSQARRQ 211


>gi|27904678|ref|NP_777804.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|29611836|sp|P59497|RNT_BUCBP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|27904075|gb|AAO26909.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 217

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A + +        + E    F  +P      D +A+   G
Sbjct: 20  VVIDIETAGFNPETDAILEIAIITLKMNEFGLLEKEHLLHFHIQPFKGSRIDKKAIEFHG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  + E E    I          +     II  +N  FD  +      R    
Sbjct: 80  IDPFSPLRRAISEYEALYSIFNLIHKGIKSNNCTKSIIVAHNAIFDYNFLTAAITRTKIK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +  +          L  +       +                     A+    ++  AH 
Sbjct: 140 NNPFHSFVIFDTATLSGLAVGQTVLARACK-----------------AIGLTFDNNQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTQQTANLFCKIVNR 200


>gi|237785812|ref|YP_002906517.1| putative DNA polymerase III subunit epsilon [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758724|gb|ACR17974.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 256

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 62/204 (30%), Gaps = 16/204 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D ET G D   DR      V ++ +   + + + +  +  +  +   ++  I GIT
Sbjct: 64  LLAVDVETTGLDADRDRLLSVGMVAINGRAIPLATADHWLVRYHEGDVSVGQSATIHGIT 123

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +    G    +    +    +      +  +    +  +      R            
Sbjct: 124 DSQLEN-GRSLLDILTDV---VNAAAGRALLAHLALIEHDFISTACERAVG--------V 171

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             S   ++D M      +    + P R +     +L +   + G+   + H+A  D  A 
Sbjct: 172 PWSPLCVVDTMDLERRSAVSFGRRPGRGEV----RLMNARYSRGLPSYHNHNALVDALAC 227

Query: 185 LALVWLIREKKPKLFEYLYDYRNK 208
             L            E +   R K
Sbjct: 228 AELYLAQTSADHFGSELVSVIRKK 251


>gi|262405023|ref|ZP_06081575.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262348862|gb|EEY98003.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 209

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 50/196 (25%), Gaps = 22/196 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI 63
           +V  D ET   D         A  ++           EV  C P      D  +V I  I
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLCAPQS---LDSGSVRIHKI 86

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q     G+ E E    +  F    N  ++GY+                 +       +
Sbjct: 87  RHQDLQD-GLSEKEALILLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIE 143

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L+                   +      L  +     +   N HDA  D  A
Sbjct: 144 VSQIYHDKLEK---------------HLPNAYFDLSLDAICRHLDLPLQNKHDALQDAIA 188

Query: 184 TLALVWLIREKKPKLF 199
              +   + +     F
Sbjct: 189 AALVFVRLTKGDLPQF 204


>gi|213967758|ref|ZP_03395905.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301382395|ref|ZP_07230813.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302061212|ref|ZP_07252753.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302132416|ref|ZP_07258406.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927534|gb|EEB61082.1| exonuclease [Pseudomonas syringae pv. tomato T1]
          Length = 237

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     +            D+   P AV I G+ P
Sbjct: 44  VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKLSP-AVLIHGLAP 101

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E      +F    ++ I+G++   FD +        +     + ++ + 
Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLARALKESLDYRLQHAFFDA 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +L                           L D     G+     H+A AD   T 
Sbjct: 158 AEIAPMLC-----------------EQANLRHAGLDDWTQFFGLHAEERHNASADALVTA 200

Query: 186 ALVWLIREKKPKL 198
            L  ++     + 
Sbjct: 201 ELTLILFSHARRQ 213


>gi|78777984|ref|YP_394299.1| exonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78498524|gb|ABB45064.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 247

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   ++I D ET G     DR  Q   + +     +IE    FF            A+  
Sbjct: 1   MAKRYIILDTETTGIG-EEDRVIQLGFIVLGE--REIEVQNEFFST---SVPISFGAMET 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
            GITP+      + +   S R     +     +I +N     D   + 
Sbjct: 55  HGITPEMLDGKPLCKDSTSYRRLNELNSDENYLIIHNAKFDIDMLQKE 102


>gi|193076772|gb|ABO11486.2| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
          Length = 497

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 272 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 327

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +  +      AE +  + ++        I  +N  FD  +    F R    
Sbjct: 328 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 375


>gi|320330625|gb|EFW86603.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 237

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     +            D+   P AV I G+ P
Sbjct: 44  VVLDLETSGLNMNRDQVLSMGAVVIEDGAIDLGQQFERT-LLRVDHKISP-AVLIHGLAP 101

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E      +F    ++ I+G++   FD +        +     +  + + 
Sbjct: 102 S-AIAAGSEPVEALLDFMEFV--GDSPILGFHAP-FDQHMLSRALKESLGYRLQHPFFDA 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +L                           L D     G+     H A AD   T 
Sbjct: 158 AEIAPMLC-----------------EHANLRHAGLDDWTRFFGLHAEERHHASADALVTA 200

Query: 186 ALVWLIREKKPKL 198
            L  ++     + 
Sbjct: 201 ELALILFSDARRQ 213


>gi|154174963|ref|YP_001408508.1| DNA polymerase III subunit epsilon [Campylobacter curvus 525.92]
 gi|112803051|gb|EAU00395.1| nickel transport permease component NikD [Campylobacter curvus
           525.92]
          Length = 273

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D ET G  +   +  +   +++ +   +I   E F   P            +TGI+
Sbjct: 76  FCIVDIETSGG-ITSGQIIEIGALKI-KNGVEIGRFESFVDAP----FVPENITQLTGIS 129

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                           R   F     T +   +N+ FD  +                   
Sbjct: 130 QSDLTGAP-SLKSVLERFKIFL---GTSVFVAHNVNFDYGFISQSLSNIGLGMLLN---- 181

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +   +D+ R   A                 + L  L    GI + + H A  D  A 
Sbjct: 182 --RKLCTIDLSRRTIASQ--------------KYGLGSLKELLGINNTH-HRALNDAIAA 224

Query: 185 LALVWLI 191
             ++ + 
Sbjct: 225 TEILKIC 231


>gi|90417008|ref|ZP_01224937.1| ribonuclease T [marine gamma proteobacterium HTCC2207]
 gi|90331355|gb|EAS46599.1| ribonuclease T [marine gamma proteobacterium HTCC2207]
          Length = 221

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 57/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V   +D Q    I+ T      P    + +  A+  TG
Sbjct: 29  VVVDVETGGFNSRTDAMLEIAAVILEMDAQGNIQIKETHSKNIDPFPGAVVEKAALEFTG 88

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I      R    E E  R I +              ++  +N  FD  +      RN   
Sbjct: 89  IDIYDPERMPEEEGEALRDIFRPIRHEISATGCTRSVMVAHNAHFDLGFVNAAVNRNQIK 148

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L  +       +                     A     ++ +AH 
Sbjct: 149 RNPFHPFSCFDTSTLAGLAYGQTVLAKACQ-----------------AAKMDFDNRSAHS 191

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 192 ALYDAVKTAELFCGIVNR 209


>gi|315605967|ref|ZP_07880998.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312249|gb|EFU60335.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 250

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 24/200 (12%)

Query: 8   YDYETFGRDVALDRPAQFAGV-RVDR-----QWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +D ET G     DR    A V R+D         + +    +            +A  + 
Sbjct: 11  FDTETTGVRPLKDRLVTAALVLRIDGASYRFGVSEPDQVATWLT--DPGVEIPEQATAVH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           GIT  +A  +G    E    +             +   N  +D         R+   S+ 
Sbjct: 69  GITTAQARDEGRPIEEVLHELAGSIVEHWLRGYPLVAFNASYDITLVNQELRRHRVGSFE 128

Query: 120 WSWDN-GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177
              +       D L + R +  F                  L ++A   G     +AH A
Sbjct: 129 ERLEGAPMLVVDPLVLDRKLDRFR------------KGKKTLTEMAPVYGAAVSPDAHTA 176

Query: 178 KADVYATLALVWLIREKKPK 197
           + DV  TL ++  I +K P+
Sbjct: 177 EVDVAMTLDVLAGIADKYPQ 196


>gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 282

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 64/199 (32%), Gaps = 35/199 (17%)

Query: 1   MTNHFVIYDYETF-GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAV 58
           M   FV++D+ET  G++           V   +  +       F+     +    +P A+
Sbjct: 1   MIEDFVVFDFETARGKNP-----CSLGMVEY-KNGK---KYREFYELINPEVAYFNPFAI 51

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GIT +    +    +E    +  F        +  +N +FD+        R   D  
Sbjct: 52  QIHGITYEDVQHE-RNFSELWDAMLPFIE---GKTLVAHNAKFDNAVLLYSLQRYGIDVP 107

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                   + +  L   R + A                S+KL  LA    +  +  H+A 
Sbjct: 108 ------PYASFCTLQRARRLVAL--------------PSYKLSSLANFFEVPQLRHHNAL 147

Query: 179 ADVYATLALVWLIREKKPK 197
            D +    L   +   + +
Sbjct: 148 EDAFVCGELFLKLNRVEEE 166


>gi|308049989|ref|YP_003913555.1| RNAse T [Ferrimonas balearica DSM 9799]
 gi|307632179|gb|ADN76481.1| RNAse T [Ferrimonas balearica DSM 9799]
          Length = 222

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 61/199 (30%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  ++D Q   + + T  F   P +    +P A+   G
Sbjct: 20  VVIDVETAGFNAQTDALLEIAAVTLKMDEQGWLQPDQTIHFHVAPFEGANLEPAALEFNG 79

Query: 63  IT-PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           IT P  ALR  V E E    I +           N  II  +N  FD  +      R   
Sbjct: 80  ITDPFSALRGAVSEREALSEIFKLVRKGQKAAGCNRSIIVAHNATFDQSFVNAASERTKM 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                     A     ++  AH
Sbjct: 140 KRVPFHPFGTFDTAALSGLALGQTVLAKACR-----------------AAGIPFDNKEAH 182

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  +
Sbjct: 183 SALYDTQRTAELFCYIVNR 201


>gi|317051245|ref|YP_004112361.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
 gi|316946329|gb|ADU65805.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
          Length = 206

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 52/189 (27%), Gaps = 20/189 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  D       VR+             F  P  +     E++ I  +    
Sbjct: 34  FDCETTGLDVHHDEIISIGAVRIRGNQILTSEKLELFFNPQQEMRV--ESIKIHHLLTCD 91

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
            +  GV   E  R+   F    N  ++GY        +   +  R        +  N   
Sbjct: 92  LVD-GVPLEEGIRQFLNFI--GNRPLVGYY-----LEFDVAMVNRVLKPMLGITLPNRQI 143

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
               L              +  +   G    +   +     +     HDA  D   T  +
Sbjct: 144 EVSGL----------YYDKKIAAIPQGNVDLRFDSIMHDLDLPPFAKHDALGDAIMTAMM 193

Query: 188 VWLIREKKP 196
              ++  K 
Sbjct: 194 YVKLQHIKY 202


>gi|295690334|ref|YP_003594027.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
 gi|295432237|gb|ADG11409.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
           21756]
          Length = 297

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 19/68 (27%), Gaps = 2/68 (2%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  D ET G D       + A +  R        E  E F           PE   +TGI
Sbjct: 44  LFVDVETTGLDPKQHEIIELAMIPFRYGLDGVIYEVLEPFHGFRQPSGPIPPEITALTGI 103

Query: 64  TPQKALRD 71
                   
Sbjct: 104 DDAMVAGQ 111


>gi|148272897|ref|YP_001222458.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830827|emb|CAN01769.1| putative DNA polymerase III , epsilon subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 233

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 9/123 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +    +D ET G DV   R      V +D Q E +E  +               A  I G
Sbjct: 7   DTLASFDLETTGVDVETARIVTACIVVLDAQGEVLERHDWLA---DPGVEIPAGAAAIHG 63

Query: 63  ITPQKALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           +T ++A   G   A    E    I   F+     ++ YN   +D         R+  +  
Sbjct: 64  VTTERARAAGRDAAVVVLEIVTTIRAMFAR-GLALVVYNAP-YDLTLLNREAVRHGVEPL 121

Query: 119 RWS 121
           R +
Sbjct: 122 RDT 124


>gi|304389634|ref|ZP_07371596.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327187|gb|EFL94423.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 240

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 23/195 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G   + DR A  + +R         +    +          P A  + G+T + 
Sbjct: 19  FDTETTGVFTSRDRIATVSLIR-----RINGTDSPRYWIINPGVPMPPAAGRVNGLTDEY 73

Query: 68  ALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
               GV       E +  I +        ++G+N   FD         R+   + R    
Sbjct: 74  LQAHGVDPRVGLEEVTGIIAETMRR-GVPVVGFNV-TFDFAILEAELARHNLPTLR--QR 129

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVY 182
              S   ++D +                        L  +  A  +    + H+A+ADV 
Sbjct: 130 LEGSVGPIVDPLVLDRIL---------DRYRKGKRNLASVCTAYDLPLREDFHNAQADVS 180

Query: 183 ATLALVWLIREKKPK 197
           ATL L+  + E+ P+
Sbjct: 181 ATLDLLGAMSERFPE 195


>gi|255523173|ref|ZP_05390144.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296186139|ref|ZP_06854544.1| exonuclease [Clostridium carboxidivorans P7]
 gi|255513041|gb|EET89310.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296049407|gb|EFG88836.1| exonuclease [Clostridium carboxidivorans P7]
          Length = 255

 Score = 65.6 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 65/217 (29%), Gaps = 30/217 (13%)

Query: 4   HFVIYDYETF-GRDVALD-----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           +++++D E     +   +              Q   V++D   + I S      KP    
Sbjct: 2   NYIVFDLEFNQSLNSKKENKNLTNLKCPFEIIQIGAVKLDENLQII-SILNKLVKPELYT 60

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           + +P    +TGIT            E  + I +F       +  +      + +    ++
Sbjct: 61  VMNPFVEEMTGITIDML-NTEQPFQEVYKEILEFIGNDKNILCVWGACDIKELFRNIQYH 119

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                     + N              YA         +      + +L ++ + N    
Sbjct: 120 NLDISPISKEYINIQF-----------YASKYLNCPKGTNIGLKNAAELLNINIEN---- 164

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNK 208
              H+A  D Y T  +   I +K   + +Y  +   K
Sbjct: 165 -KFHNALNDAYYTAEVFKKIPKKNINIIKYDVNKNMK 200


>gi|313681469|ref|YP_004059207.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154329|gb|ADR33007.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 247

 Score = 65.6 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 27/203 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +++ D ET G     DR  Q   + +D   + +E           +      A+ + 
Sbjct: 1   MAKYILLDTETTGAG-DDDRIIQLGYMVLD--GKNVEVYNEMCST---EVAISYGAMEVH 54

Query: 62  GITPQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           GITP+         E    +++ +  +  +  +I +N                       
Sbjct: 55  GITPEMIEGKPSCRETSAFQKLCE-LNTSDNVLIIHNAPFDLGML--------------- 98

Query: 121 SWDNGNSRWDLLDVMRAIYAFSP--DGIQWPSRDDGATSFK-LQDLALANGIEHVNAHDA 177
           + +N +S+  L+D +R         +  +          +K  QD A + GIE   AHDA
Sbjct: 99  TKENFSSQMRLIDTLRCARHLFDEEESHRLQYFRYRLGLYKIEQDEAESLGIEV-KAHDA 157

Query: 178 KADVYATLALVWLIREKKPKLFE 200
             DV      +  +R++  + +E
Sbjct: 158 IGDVLVLKLFLTELRKRLQERYE 180


>gi|227548071|ref|ZP_03978120.1| DNA polymerase III, epsilon subunit [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079869|gb|EEI17832.1| DNA polymerase III, epsilon subunit [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 188

 Score = 65.6 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 49/190 (25%), Gaps = 27/190 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-----STEVFFCKPADDYLPDPEAV 58
           H +  D ET G     D+      V V+     I+        V      +       + 
Sbjct: 15  HLLAVDVETTGLKPERDQLVSIGWVPVND--RVIDLSGAAHFVVAGASVGN-------SA 65

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + G+T    L  G   AE      +  +                  +        +  +
Sbjct: 66  TLHGVTDDDVLASGTDIAEIVEHFERAIA-------------GRKLLAHFAQMELGFIGH 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +    G       D +   +A     ++  +        +L  +    G+     H+A 
Sbjct: 113 AFKQVRGTRWRLREDEVVDTFALERRHMERMATYPRGEDLRLARVRQRYGLPAYRNHNAL 172

Query: 179 ADVYATLALV 188
            D  A   L 
Sbjct: 173 TDAVACAELY 182


>gi|156346891|ref|XP_001621564.1| hypothetical protein NEMVEDRAFT_v1g248663 [Nematostella vectensis]
 gi|156207642|gb|EDO29464.1| predicted protein [Nematostella vectensis]
          Length = 460

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 83/255 (32%), Gaps = 42/255 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V++D ET G D + D   Q A           ++    +  P      D  A  + GI+ 
Sbjct: 157 VMFDTETTGLDTSNDDIIQLAC--ASENG---DNLHSRYMFPRGS--IDLGATRVHGISK 209

Query: 66  QK------ALRDGVVEAEFS------RRIHQFFSVPNT------CIIGYNNIRFDDYYSR 107
                    ++DG   A+ +      R    F  +  +      C++ +    FD     
Sbjct: 210 AFIDGSRVLVKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRLLI 269

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA--- 164
           N   R+           G+   D + V+RA         +   +    +SFK + L+   
Sbjct: 270 NCLKRHNL--MNEFISTGSVLLDSVKVVRAS--------KKQEKSPFDSSFKKESLSALH 319

Query: 165 -LANGIEHVNAHDAKADVYATLALVWLIREKKP---KLFEYLYDYRNKNQLRKLIDIQNM 220
               G+     HDA+AD  A   ++  I +       +  ++   ++  +++        
Sbjct: 320 GHLFGVPIDRPHDAQADACALSKVLMKIPKNMSTSVTINNFMKQMKHSQEVKNRKFTLWG 379

Query: 221 TPLVHVSGMFGASRS 235
            P+        A   
Sbjct: 380 LPVSLFMIEKIAKSG 394


>gi|332290155|ref|YP_004421007.1| ribonuclease T [Gallibacterium anatis UMN179]
 gi|330433051|gb|AEC18110.1| ribonuclease T [Gallibacterium anatis UMN179]
          Length = 224

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 57/203 (28%), Gaps = 30/203 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A + V    + +   +    F  K  +    DP ++ I G
Sbjct: 33  VIVDVETSGLNAQTDGLLELAAITVKMDEQGLLHPDEKCHFQIKLFEGANVDPNSLKING 92

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R+ V E        Q              I+  +N  FD  +      R    
Sbjct: 93  INPDDPQREAVDELTALTGFFQMVRRGQKAAECKRSILVAHNAMFDYNFLMAAINRTGIK 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L+      GI      A
Sbjct: 153 ------RNPFHPFSTFDTATLAGFMFGQTV-------------LRTACDNAGIPFEPSKA 193

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D   T  L  L+  K  +
Sbjct: 194 HSALYDTEKTAELFCLMVNKLKQ 216


>gi|328958152|ref|YP_004375538.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4]
 gi|328674476|gb|AEB30522.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4]
          Length = 177

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET             A   V +  + ++           +       V I GI
Sbjct: 2   NFVALDFET--ASHQRHSACSIALTVV-KNSQIVDHYYSL---IKPETEFFWRNVQIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E   +I  FF   N  I+ +N           + Y          + 
Sbjct: 56  TEDDVQTAP-SFPEVWEKIKPFFKE-NKLIVAHNLPFDRGVLQGCLDY----------YQ 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  L  +++      +            + KL  +    GI   N H+A  D  A
Sbjct: 104 LQQPHFQTLCTVQSSRKLITEI----------PNHKLNTVCDHLGIRLDNHHNALEDSNA 153

Query: 184 TLALVWLIREK 194
             A++  + + 
Sbjct: 154 CAAILLYLEDH 164


>gi|301612101|ref|XP_002935535.1| PREDICTED: three prime repair exonuclease 2-like [Xenopus
           (Silurana) tropicalis]
          Length = 230

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 62/202 (30%), Gaps = 26/202 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGV----------RVDRQWEKIESTEVFFCK-PADDY 51
             FV  D E  G +  L +  +   V            D+   ++       C       
Sbjct: 6   KSFVFLDLEATGLNYNLPKITELCLVAVHVSSLENPETDQSEVQLPRVLDKLCLCVDPKK 65

Query: 52  LPDPEAVFITGITPQKALR--DGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSR 107
               EA  ITG++ +K              + + +F +      C++ +N + +D    +
Sbjct: 66  PITKEACNITGLSNEKLANCEKPCFNLNLVQLVKEFLNRQAQPVCLVAHNGLFYDFPLLK 125

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALA 166
             F             N      LL +                ++    S  L +L   +
Sbjct: 126 AEFQ----------QQNEELPGSLLCLDSLKAFRQLSQQDRRHQEFTKGSHTLTELYRRS 175

Query: 167 NGIEHVNAHDAKADVYATLALV 188
            G E +++H A+ DV   + + 
Sbjct: 176 FGKEPIDSHYAEGDVLTLIKVF 197


>gi|307545330|ref|YP_003897809.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307217354|emb|CBV42624.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
          Length = 682

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 46/183 (25%), Gaps = 31/183 (16%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            V +D ET G  +   DR       R+      +   E F             +  I G+
Sbjct: 490 IVAFDTETTGLALREGDRLISLGACRI-VNGRLLAD-ETFEQHVNPQRPIPSASTAIHGL 547

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q        E +   R   +     + ++  +N  FD                  +  
Sbjct: 548 GDQDVENAPTAE-QVLPRFRDYV---GSAVLLAHNAAFDM---------LAIRPGPGTDA 594

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADV 181
                 D L + RA              D G     L  LA   G        H A  D 
Sbjct: 595 FDMPVLDTLLLSRA-------------LDPGLEGHDLDSLAKRYGLRFPPGTRHTALGDA 641

Query: 182 YAT 184
             T
Sbjct: 642 RVT 644


>gi|226330322|ref|ZP_03805840.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198]
 gi|225201117|gb|EEG83471.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198]
          Length = 212

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q     ++T  F  +P +    +P A+  TG
Sbjct: 20  VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVEPFEGANLEPAALEFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +        +  N  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKMVRKGMKDADCNRAIIVAHNANFDHSFVMAAAERAGLK 139

Query: 117 SYRWS 121
              + 
Sbjct: 140 RNPFH 144


>gi|9630507|ref|NP_046936.1| gp41 [Enterobacteria phage N15]
 gi|3192726|gb|AAC19079.1| gp41 [Enterobacteria phage N15]
          Length = 304

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 12/191 (6%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + +V+ D ET G         ++A +                          PE   I
Sbjct: 17  LKSDYVVIDTETTGLG-------EYAEIIEIAIINMRGEVL-LDTLVKPTKPIPPEVTEI 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             IT +          +   ++    S      + +N+        +      F +   +
Sbjct: 69  NHITNEMVASAPA-WCDVFPKVLAIISKHK--WLAWNSGFDARMLEQTCLNTIFLNKNAY 125

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                 SR     +  A   +     ++ ++        L   A  +G+    AH A AD
Sbjct: 126 YVTAMVSRIHTSHI-DAKAVYDTWYGEYDAKHQAFKRQSLTIAAARHGVLLEGAHRALAD 184

Query: 181 VYATLALVWLI 191
               LA++  +
Sbjct: 185 CKMVLAVLQKV 195


>gi|302823961|ref|XP_002993628.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
 gi|300138556|gb|EFJ05320.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
          Length = 175

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            V YD ET        +     +F  V V  R  E+++S      +P+   L  P +V  
Sbjct: 2   IVFYDVETT-VPEVKGQGYEILEFGAVVVSARGLEELDSFTTL-VRPSSLALVSPRSVSC 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI     +       E + R+H           G+N +RFD        + +       
Sbjct: 60  NGIVQDSLVGAP-SFLEIADRVHALL--HGRVWAGHNILRFD-NLRIKEAFAS----IGR 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +        D   ++R  +               A + K+  LA   G+     H + AD
Sbjct: 112 AGPEAAGHIDTFPLLRKSF------------GQRAGNLKMATLASYFGLG-KQEHRSLAD 158

Query: 181 VYATLALVWLI 191
           V   + ++ L 
Sbjct: 159 VRMNIEVLKLC 169


>gi|299066912|emb|CBJ38107.1| oligoribonuclease [Ralstonia solanacearum CMR15]
          Length = 219

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60
           N+ V  D E  G     DR  + A V  D +   +    V      D+ L   +A     
Sbjct: 28  NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDELLDGMDAWNKGT 87

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    K       EA+    +  F       +   +  N+I  D  +      +   
Sbjct: 88  HGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEA 147

Query: 116 DSYRW 120
             +  
Sbjct: 148 YFHYR 152


>gi|119587653|gb|EAW67249.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_a
           [Homo sapiens]
          Length = 179

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|308179139|ref|YP_003918545.1| exonuclease [Arthrobacter arilaitensis Re117]
 gi|307746602|emb|CBT77574.1| putative exonuclease [Arthrobacter arilaitensis Re117]
          Length = 467

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 27/191 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D+ET   +            +V R  + I+        P          + I  IT
Sbjct: 3   FTAIDFET--ANGKRASVCAVGMTKV-RNGKIIDQASWLIKPPHGFTTFADRNIAIHKIT 59

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +       E + RI  F       I+  +   FD    R     +  D   + W  
Sbjct: 60  EADVVNAP-SWTESAARIRDFV---GNDIVVAHYATFDKSVWRQACEWSGVDFGDFHW-- 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                   D+ RA                      L  +A + GI+ ++ H+A +D    
Sbjct: 114 ----LCSRDLARAHLGLQDC--------------SLPTVADSLGIKGLDHHNAASDASVC 155

Query: 185 LALVWLIREKK 195
             +V  I ++ 
Sbjct: 156 AQIVLAIAQRA 166


>gi|205355328|ref|ZP_03222099.1| exonuclease possibly DNA polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346562|gb|EDZ33194.1| exonuclease possibly DNA polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 233

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 30/171 (17%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  V+     +   V++ +  ++I   + F  K  +          +TGIT
Sbjct: 49  FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 102

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          +       F       I   +N+RFD  +         +         
Sbjct: 103 YEMVENAP-SLTKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 154

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
              R   ++  +                  +  +KL+ L    G+E+ +  
Sbjct: 155 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTHHR 189


>gi|315644054|ref|ZP_07897224.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453]
 gi|315280429|gb|EFU43718.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453]
          Length = 397

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 5/121 (4%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +   F ++D E     V      +   VR+D    + E T   + KP+   +P P AV  
Sbjct: 21  LEQKFCVFDLEATDDQVENAEVVEIGAVRMDSTGIQEEQTFHTYIKPS-GPIPQPIAVS- 78

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI             +       F +      + Y    F     +    R+       
Sbjct: 79  TGIYNADVEGSPR-FPKGYGMFTGFANEC--IFVTYGGYEFVLPLLQRECARHGLPEPAN 135

Query: 121 S 121
            
Sbjct: 136 P 136


>gi|312963467|ref|ZP_07777949.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
 gi|311282273|gb|EFQ60872.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
          Length = 235

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 58/207 (28%), Gaps = 26/207 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V +        S          D    P +V I G+ P
Sbjct: 42  VVVDLETSGLNLNRDQVLSIGAVVI-EDGAVDFSQLFERTLQRTDTKLSP-SVLIHGLGP 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E    +  F        +   +  FD +        +        + + 
Sbjct: 100 S-AIAAGSDPVEA---LLDFMEFVGDSPLLAFHAPFDQHMLGRALKDSLGYRLAHPFLD- 154

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D+  ++         G              L D      ++    H A AD  AT 
Sbjct: 155 --VADIAPLLCPEAHIREAG--------------LDDWINHFKLQVGERHHASADALATA 198

Query: 186 ALVWLIR---EKKPKLFEYLYDYRNKN 209
            L+ ++     ++     +    R   
Sbjct: 199 ELMLILFSRARQQHIDTPHALQTRLSQ 225


>gi|148925831|ref|ZP_01809518.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844817|gb|EDK21921.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 256

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  V+     +   V++ +  ++I   + F  K  +          +TGIT
Sbjct: 72  FCIVDIESTG-SVSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          +       F       I   +N+RFD  +         +         
Sbjct: 126 YEMVENAP-SLTKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   ++  +                  +  +KL+ L    G+E+ + H A  D  A 
Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220

Query: 185 LALVWLI 191
             +    
Sbjct: 221 AEIFKYC 227


>gi|50084331|ref|YP_045841.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ADP1]
 gi|49530307|emb|CAG68019.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter sp. ADP1]
          Length = 450

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 225 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVDVHGIT 280

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +  L      AE +  + ++        I  +N  FD  +    F R    
Sbjct: 281 DEFLLDKPK-YAEIAEPLFEYLKGAE---IIAHNASFDMNFLDMEFKRAGLP 328


>gi|323462903|pdb|3NGY|A Chain A, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462904|pdb|3NGY|B Chain B, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462905|pdb|3NGY|C Chain C, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462906|pdb|3NGY|D Chain D, Crystal Structure Of Rnase T (E92g Mutant)
 gi|323462908|pdb|3NGZ|A Chain A, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Gc) With One Mg In The Active Site
 gi|323462909|pdb|3NGZ|B Chain B, Crystal Structure Of Rnase T In Complex With A
           Non-Preferred Ssdna (Gc) With One Mg In The Active Site
          Length = 235

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 59/200 (29%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 40  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V   E    I +           N  I+  +N  FD  +      R    
Sbjct: 100 IDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 159

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G++     A
Sbjct: 160 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGMDFDSTQA 200

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 201 HSALYDTERTAVLFCEIVNR 220


>gi|213646704|ref|ZP_03376757.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 154

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 39/149 (26%), Gaps = 14/149 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N ++  D ET G         +   +  D          +             EA+ I G
Sbjct: 18  NDYLFIDTETTGLG-DDAEIVEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHG 69

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +          +    + + F       + YN   FD    R  +  N   S    W
Sbjct: 70  ITNEMVAFAPA-WTDICGAVEELFRRFG--FVIYNA-DFDLRLIRQTYALNERPSEGAPW 125

Query: 123 DNGNSRWDLLDVMRAIY--AFSPDGIQWP 149
                    + +           +G +W 
Sbjct: 126 MLAAHSVCAMKLYAEYRGEPGRFNGYKWH 154


>gi|92114250|ref|YP_574178.1| ribonuclease T [Chromohalobacter salexigens DSM 3043]
 gi|122419726|sp|Q1QVM9|RNT_CHRSD RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|91797340|gb|ABE59479.1| RNAse T [Chromohalobacter salexigens DSM 3043]
          Length = 221

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 68/227 (29%), Gaps = 43/227 (18%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYL 52
           M   F     V+ D ET G +   D   + A V   +D Q   + + T  F  +P +   
Sbjct: 10  MAQRFRGFLPVVVDLETGGFNAQRDALLEIAAVTLTMDAQGNLMPDDTHAFHVRPFEGAN 69

Query: 53  PDPEAVFITGIT-----PQKALRDGVVEAEFSRRIHQ------FFSVPNTCIIGYNNIRF 101
            +  A+  TGI       Q+     + E +    I +        +     I+  +N  F
Sbjct: 70  IEQAALDFTGIDLDSPLRQQVA---LSEHDALGEIFKPVRKAIKANQCTRAILVGHNAAF 126

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D  +      RN          N    +   D            +             L 
Sbjct: 127 DQGFLNAAVERNGIK------RNPFHPFSCFDTATLGGLVYGQTV-------------LA 167

Query: 162 DLALANGIEHVN--AHDAKADVYATLALVWLIREKKPKLFEYLYDYR 206
               A GIE  N  AH A+ D   T  L   +  +   L  +    +
Sbjct: 168 RACRAAGIEFDNASAHSARYDTERTAELFCAMVNRYKNLGGWDLALK 214


>gi|222151870|ref|YP_002561030.1| hypothetical protein MCCL_1627 [Macrococcus caseolyticus JCSC5402]
 gi|222120999|dbj|BAH18334.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 297

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 57/225 (25%), Gaps = 30/225 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N F+  D+ET   +           V+V         TE F+     +   +   + + 
Sbjct: 1   MNSFIALDFET--ANHNAASICSVGMVKVIDNMM----TETFYTLVNPETNFNTSNINVH 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I P+        E           S      +  +  +FD         R  ++     
Sbjct: 55  NIKPEDVTAAPTFE----TVYPHMLSFIGDLPVVCHFAQFDMKVLHASIKRYHFEMPTLP 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +                                  S+ L+++     +E    H A  D 
Sbjct: 111 Y--------------------FCSCIMARDTVTNHSYSLKNMMTYYNLEFHGHHHALNDA 150

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
            A   +   + +    L +YL   R K  +  +        +   
Sbjct: 151 KACAMITVRLLKNYESLNQYLTYKRRKKYISSVSLKSKRAQMARY 195


>gi|224476950|ref|YP_002634556.1| hypothetical protein Sca_1466 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421557|emb|CAL28371.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 185

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 57/201 (28%), Gaps = 30/201 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N FV  D+ET   +           V+V    E +E+          +     + + + 
Sbjct: 4   KNAFVALDFET--ANGKRTSICSVGMVKVVDN-EIVETFYTL---VNPNDYFSQQNINVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+      V        + QF        +  +N  FD             D+   +
Sbjct: 58  GIQPEDVATAPVFNF-VLPYMLQFIEN---LPVVAHNAAFDMTVLHASIQALGLDTPEMT 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +                       +Q   R   A  + L  +     ++    HDA  D 
Sbjct: 114 Y--------------------FCSLQLARRTVNANRYGLNHMMEYYHLDFHGHHDALNDA 153

Query: 182 YATLALVWLIREKKPKLFEYL 202
            A   + + + +    L + L
Sbjct: 154 KACAMITFRLLKNYDSLNDML 174


>gi|293390535|ref|ZP_06634869.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951069|gb|EFE01188.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 217

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 26/201 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D     + +    F  +P +    DPE++   G
Sbjct: 23  VVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQPFEGANIDPESLKFNG 82

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ + +  +E  + + +     +    II  +N  FD  +      R    
Sbjct: 83  IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFDQGFLMAAAQRMNAK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D            +   +       F           +   AH 
Sbjct: 143 ------RNPFHPFSTFDTATLSGFMFGQTVLVKACQAAKIPF-----------DSQQAHS 185

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D   T  L   +     +
Sbjct: 186 ALYDTERTAELFCYMVNHLKQ 206


>gi|284005763|ref|YP_003391582.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
 gi|283820947|gb|ADB42783.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
           74]
          Length = 193

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 57/202 (28%), Gaps = 27/202 (13%)

Query: 4   HFVIYDYETFGRD----------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
            ++I D ET G                R    A    D + +++        KP      
Sbjct: 2   TYLIIDTETNGLPQSYHLPVTDLTNWPRLISVAWGLYDEEGKELCRHYA-IVKPDGYRW- 59

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           +  A  I  ITP++A   G    +   ++       +      +NI  D       F R 
Sbjct: 60  NKVAQQIHRITPEQAETKGQPLDDVLNQLCPAMERADA--WVGHNIDLDYGVIGAEFIRA 117

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-GIEHV 172
                    +                                   +L +L     G +  
Sbjct: 118 EQRQPGRVGEFP------------ARPVLCTMDVSAKVTPNREPVRLDELYQLLTGKKMK 165

Query: 173 NAHDAKADVYATLALVWLIREK 194
             HDA AD+ AT+   + ++++
Sbjct: 166 GMHDASADMLATVRCFFGLKQR 187


>gi|153839349|ref|ZP_01992016.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
 gi|149747140|gb|EDM58128.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810]
          Length = 209

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 20/194 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET   D         A  ++     +I +++ F  +       D  +V I  I 
Sbjct: 30  FVSLDCETTSLDPNRAELVTIAATKIID--NRILTSQPFEVRLRAPQSLDSRSVKIHKIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q     G+ E E   ++  F    N  ++GY+              +  +       + 
Sbjct: 88  HQDLAD-GISEKEALLKLLAFI--GNRPLVGYHIRYDKKILDLACQRQLGFPLPNPLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+                   +      L  +     +   + HDA  D  + 
Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLDAICKHLELPIQDKHDALQDAISA 189

Query: 185 LALVWLIREKKPKL 198
             +   + +     
Sbjct: 190 ALVFVRLTKGDLPN 203


>gi|57237506|ref|YP_178520.1| DNA polymerase III subunit epsilon [Campylobacter jejuni RM1221]
 gi|57166310|gb|AAW35089.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Campylobacter jejuni RM1221]
          Length = 233

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  V+     +   V++ +  ++I   + F  K  +          +TGIT
Sbjct: 49  FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 102

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          +       F       I   +N+RFD  +         +         
Sbjct: 103 YEMVENAP-SLTKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 154

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   ++  +                  +  +KL+ L    G+E+ + H A  D  A 
Sbjct: 155 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 197

Query: 185 LALVWLI 191
             +    
Sbjct: 198 AEIFKYC 204


>gi|262368670|ref|ZP_06061999.1| ribonuclease HI [Acinetobacter johnsonii SH046]
 gi|262316348|gb|EEY97386.1| ribonuclease HI [Acinetobacter johnsonii SH046]
          Length = 474

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 9/111 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++  + GI+
Sbjct: 249 LILDTETTGFYYQDGDRIIEVGAIEM-VNRKLTGSSIHIYINPKK---PVGDSENVHGIS 304

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
                   +   E +  +  +        I  +N  FD  +    F R  +
Sbjct: 305 DDFLKDKPL-YQEIADTLFAYLKGAE---IIAHNASFDMNFLDMEFKRAGF 351


>gi|83591972|ref|YP_425724.1| DNA polymerase III subunit epsilon [Rhodospirillum rubrum ATCC
           11170]
 gi|83574886|gb|ABC21437.1| Exonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 209

 Score = 65.6 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 56/191 (29%), Gaps = 17/191 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G D   D     A VRV               KP+       +AV I  +  Q 
Sbjct: 34  VDCETTGLDRHNDDIITLAAVRVRGNRVLTSQKLDLVVKPS--RPIRRDAVCIHHLREQD 91

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
             R G+   E   R  +F    +  +IGY             F     D     W     
Sbjct: 92  VER-GLAPREAVARFLRF--AGSRPLIGYYL----------EFDVALIDRLVRPWLGIGL 138

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
               ++V    Y +   G        G    +   +  A  I  ++ HDA  D   T   
Sbjct: 139 PNPRIEVSEMFYDWRTRG--REELYTGTVDLRFATILEALDIPPLHNHDAFEDAVMTSLA 196

Query: 188 VWLIREKKPKL 198
              +R +  + 
Sbjct: 197 YLKLRARAGRQ 207


>gi|301596826|ref|ZP_07241834.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB059]
          Length = 438

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 213 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVQVHGIT 268

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +  +      AE +  + ++        I  +N  FD  +    F R    
Sbjct: 269 DEFLVDKPK-YAEIADTLFEYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 316


>gi|294649872|ref|ZP_06727272.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter haemolyticus ATCC 19194]
 gi|292824246|gb|EFF83049.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 452

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 227 LILDTETTGFYYQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVDVHGIT 282

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +         AE +  +  +        I  +N  FD  +    F R    
Sbjct: 283 DEFLQDKPK-YAEIADALFAYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 330


>gi|256027838|ref|ZP_05441672.1| exonuclease, RNase T and DNA polymerase III [Fusobacterium sp. D11]
 gi|289765790|ref|ZP_06525168.1| exonuclease [Fusobacterium sp. D11]
 gi|289717345|gb|EFD81357.1| exonuclease [Fusobacterium sp. D11]
          Length = 191

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 23/195 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQF-AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            N  +  D ET G +       Q    +R+D+  + +E    F+ KP ++   + +A+ +
Sbjct: 1   MNKIIFIDTETGGVNPEKSALIQLSGIIRIDK--KDVEKFN-FYIKPFENSEVNEKALEV 57

Query: 61  TGITPQKALRDGVVEA-EFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYR 112
            G T  +   +  +E  E  ++               +  I+   N+RFD    + +F R
Sbjct: 58  QGRTLDELKAEKYIEEKEVYKQFINLLDKYIDKYDKTDKFIVAGYNVRFDVDILKALFQR 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
           +            N  +  LD       +S   +Q         + KL+      GIE  
Sbjct: 118 HG----------NNFLFSYLDSSMLDPLYSIRLLQIAGILPVLENNKLETWCKHFGIEL- 166

Query: 173 NAHDAKADVYATLAL 187
            AHD+  D+ AT  L
Sbjct: 167 KAHDSLEDIVATKKL 181


>gi|152988293|ref|YP_001347274.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7]
 gi|150963451|gb|ABR85476.1| probable nuclease [Pseudomonas aeruginosa PA7]
          Length = 208

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 49/181 (27%), Gaps = 20/181 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET   D           V V R    +      + +P      D E++ I  +    
Sbjct: 35  LDLETTSLDPRRADILSIGAVLVRRGKLVLGERLELYVEPPPSL--DAESIRIHKLRRAD 92

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                +   E  RR+  F       ++GY         +R++  R  +D    +     S
Sbjct: 93  LEGQ-LQLDEALRRLLAFIGDRP--LLGYYLSFDIAVLNRHLRQR--FDLQLRNPTIEVS 147

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
                 V R                D     +   LA A  +     H A  D  A   +
Sbjct: 148 SLYHRKVSR-------------HFPDAHLDLRFDTLARALDVPVSGRHTALGDAQAVALM 194

Query: 188 V 188
            
Sbjct: 195 F 195


>gi|260903685|ref|ZP_05912007.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium linens BL2]
          Length = 578

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 10/108 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D A  R    A V                            A  + GIT + 
Sbjct: 364 FDLETTGVDPATARIVTAAFVESAEN--------ARTWLADPGVEIPEPARAVHGITTEF 415

Query: 68  ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRN 113
           A  +G   AE    +    +       ++  +NI +D         R+
Sbjct: 416 AQANGAPVAEVVAELCTVLADLKAEGAVVVGHNIVYDLSVMSAEVKRH 463


>gi|288941633|ref|YP_003443873.1| ribonuclease T [Allochromatium vinosum DSM 180]
 gi|288897005|gb|ADC62841.1| ribonuclease T [Allochromatium vinosum DSM 180]
          Length = 226

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 64/216 (29%), Gaps = 26/216 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE-VFFCKPAD--DYLPDPEAVFITG 62
           V+ D ET G D       + A V + ++ + +        C          DP A+   G
Sbjct: 21  VVVDVETAGFDAQRHALLEVAAVIIRQRSDGLLEPAPTLACHVLPFVGSELDPRALAFNG 80

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    RD + E +   RI             N  I+  +N  FD  + +    R  Y 
Sbjct: 81  IDPHHPFRDAISEHDALERILTPIRKAVKSTGCNRAILVGHNAHFDLGFIKAAVERTGYK 140

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    + + D +          +                 A     +H  AH 
Sbjct: 141 ------RNPFHAFSVFDTVTLGGLMFGQTV-----------LAKASRAAGLHWKHSEAHS 183

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
           A  D   T  L   +  +  +L    Y  RN   + 
Sbjct: 184 AAYDAEQTARLFCAVVNRWRELDPERYWERNSEVVA 219


>gi|261880650|ref|ZP_06007077.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332603|gb|EFA43389.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 907

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 71/234 (30%), Gaps = 36/234 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-----DYLPDPEAVF 59
            V++D ET G +V  D   Q A  R+ R  + ++   V      +       +P+P    
Sbjct: 527 IVVFDTETTGLNVFDDDVIQIAAERI-RNGKTVDKFSVHIETGREIPKMLGDIPNP---- 581

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
              I  ++  +      E  +    F     + ++  +N  +D         R     + 
Sbjct: 582 ---IIGEREHQTIRPHEEGLQMFLDFV---GSDVLIGHNAEYDYRIMDYNLRRYL--PHV 633

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D L ++R +              +               +E  N+H A  
Sbjct: 634 DWQKEHPVCLDSLKIIRLLRPELKAFKLKLLLQELH-------------LEGTNSHLADD 680

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
           DV AT++L+     +  +          K  L +    + +  L        A+
Sbjct: 681 DVNATVSLLRYCNTRAQE-----LLNSQKEFLGRKTTRERIRLLRQNYHELYAT 729


>gi|298346657|ref|YP_003719344.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063]
 gi|298236718|gb|ADI67850.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063]
          Length = 240

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 64/194 (32%), Gaps = 21/194 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G   + DR A  + +R         +    +          P A  + G+T + 
Sbjct: 19  FDTETTGVFTSRDRIATVSLIR-----RINGTDSPRYWIINPGVPMPPAAGRVNGLTDEY 73

Query: 68  ALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
              +GV      E    I          ++G+N   FD         R+   + R     
Sbjct: 74  LQANGVDPRVGLEEVAGIVAETMRRGVPVVGFNV-TFDFAILEAELARHNLPTLR--QRL 130

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYA 183
             +   ++D +                        L  +  A  +    + H+A+ADV A
Sbjct: 131 EGTVGPIVDPLVLDRIL---------DRYRKGKRNLASVCTAYDLPLREDFHNAQADVSA 181

Query: 184 TLALVWLIREKKPK 197
           TL L+  + E+ P+
Sbjct: 182 TLDLLGAMSERFPE 195


>gi|197285252|ref|YP_002151124.1| ribonuclease T [Proteus mirabilis HI4320]
 gi|227355678|ref|ZP_03840072.1| exoribonuclease T [Proteus mirabilis ATCC 29906]
 gi|194682739|emb|CAR42945.1| ribonuclease T [Proteus mirabilis HI4320]
 gi|227164285|gb|EEI49178.1| exoribonuclease T [Proteus mirabilis ATCC 29906]
          Length = 212

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q     ++T  F   P +    +P A+  TG
Sbjct: 20  VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVDPFEGANLEPAALEFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKMVRKGMKDANCNRAIIVAHNANFDHSFVMAAAERAGLK 139

Query: 117 SYRWS 121
              + 
Sbjct: 140 RNPFH 144


>gi|261493343|ref|ZP_05989869.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261310987|gb|EEY12164.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 221

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEV-FFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D     +E  +  F  KP +    +PE++   G
Sbjct: 31  VVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGANINPESLKFNG 90

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ + +   E  + + +          +I  +N  FD  + +    R    
Sbjct: 91  IDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQGFLQAAVKR---- 146

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +  +    + + D            +   +      SF           +   AH 
Sbjct: 147 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQAAQISF-----------DGHQAHC 193

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D   T  L   +  K   
Sbjct: 194 ALYDTEKTTELFCAMVNKLKD 214


>gi|226952576|ref|ZP_03823040.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ATCC 27244]
 gi|226836656|gb|EEH69039.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ATCC 27244]
          Length = 452

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 227 LILDTETTGFYYQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGDSVDVHGIT 282

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +         AE +  +  +        I  +N  FD  +    F R    
Sbjct: 283 DEFLQDKPK-YAEIADALFAYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 330


>gi|295840123|ref|ZP_06827056.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|197696983|gb|EDY43916.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 243

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 33/120 (27%), Gaps = 6/120 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +  +D E+ G DV   R    A V   R        E              EA  + 
Sbjct: 5   KQRYCAFDIESTGVDVETARIVT-ACVAQVRGGAL---PETRSWLADPSIEIPDEATAVH 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           GIT  +A  +G    E    I             +   N R+D         R+   +  
Sbjct: 61  GITTDRARAEGRPAGEVVEEITTLLHSCLLAGAPVVAMNARYDLTLLDRECRRHERPTLA 120


>gi|326693810|ref|ZP_08230815.1| DNA polymerase III, epsilon subunit [Leuconostoc argentinum KCTC
           3773]
          Length = 177

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 57/191 (29%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +         A   V +  E ++           +         I GI
Sbjct: 2   NFVAMDFET--ANHEKHSAVSMALAVVRQN-EVVDEFYSL---IQPETYFSARNTAIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q   +      E   ++   F+     ++  +N  FD    +        ++      
Sbjct: 56  REQDVAQAPK-FPEIWAQVSPLFTEDK--LVVAHNAPFDHGVLQGTLAYYGIEA------ 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + LLD +R+                   + KL  +A   GI   + H+A  D  A
Sbjct: 107 ---PHYMLLDTVRSSRQLF----------PHFRNHKLNTVAENLGITLDHHHNALDDAVA 153

Query: 184 TLALVWLIREK 194
              ++    + 
Sbjct: 154 AAQILIYQDQH 164


>gi|330984026|gb|EGH82129.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 234

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 8   YDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +D ET G D    D+  + A V  +DR  +K       +  P  D     EA  +  ++ 
Sbjct: 2   FDTETTGLDPKTGDKMVEAAFVELIDR--KKTGRFLHLYFDPKRDV--PDEAREVHNLSR 57

Query: 66  QKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            +   L  G V   F+++I  F        +  +N +FD+ +    F    Y
Sbjct: 58  DELVRLSGGRVFGHFAQQIIDFIK---GATLVAHNSKFDEGFFDMEFQHAGY 106


>gi|300836940|ref|YP_003754017.1| putative exonuclease Ycg4D [Klebsiella pneumoniae]
 gi|242205350|gb|ACS75438.1| putative exonuclease Ycg4D [Klebsiella pneumoniae]
          Length = 233

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G     D+  + A    D +   +        +       DP+A+ + GIT 
Sbjct: 107 LVLDTETTGLG-ERDQVIELA--VTDIRGAVL-----LCTRLRPTVEIDPQAMGVHGITE 158

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            +   +     + +  + +  S     ++ +N+        +      F D   W  +  
Sbjct: 159 TELSNEP-TWTQVAPALARLLS--GRHLVIFNSSFDSRMLRQTAS--AFGDQLSWWQEQN 213

Query: 126 N 126
            
Sbjct: 214 C 214


>gi|257438116|ref|ZP_05613871.1| exonuclease KapD [Faecalibacterium prausnitzii A2-165]
 gi|257199447|gb|EEU97731.1| exonuclease KapD [Faecalibacterium prausnitzii A2-165]
          Length = 183

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 17/134 (12%)

Query: 1   MTNHFVIYDYETF-GRDVA-----------LDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
           M  + V++D E   G                    +   V++D     +++  +   +P 
Sbjct: 1   MPRNLVLFDLEWNIGYKPYNFNYHGVQQTFRGEIIEIGAVKIDEDANVLDTFSIHL-RPR 59

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                      +TG+T       G       + + +F                D    + 
Sbjct: 60  IFRTLQHHIAKVTGLTQADL-DRGEP---IVQGLRRFMQWCGPDAEFAEWGMDDVPVLKQ 115

Query: 109 IFYRNFYDSYRWSW 122
             +    D  R + 
Sbjct: 116 NLFLCNLDESRPTQ 129


>gi|118602011|ref|YP_908711.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|118614749|ref|YP_908532.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|134044854|ref|YP_001102265.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|134047136|ref|YP_001102053.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|165937990|ref|ZP_02226550.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275]
 gi|229516080|ref|ZP_04405530.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9]
 gi|237810081|ref|YP_002894521.1| exonuclease family protein [Escherichia coli]
 gi|237810261|ref|YP_002894700.1| exonuclease family protein [Salmonella enterica]
 gi|300927181|ref|ZP_07142918.1| exonuclease [Escherichia coli MS 182-1]
 gi|309796486|ref|ZP_07690894.1| exonuclease [Escherichia coli MS 145-7]
 gi|118596840|dbj|BAF38144.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|118597020|dbj|BAF38323.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
 gi|133905055|gb|ABO41070.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|133905388|gb|ABO42150.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|165914013|gb|EDR32630.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275]
 gi|229346860|gb|EEO11828.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9]
 gi|229561745|gb|ACQ77947.1| exonuclease family protein [Salmonella enterica]
 gi|229561937|gb|ACQ78138.1| exonuclease family protein [Escherichia coli]
 gi|300416848|gb|EFK00159.1| exonuclease [Escherichia coli MS 182-1]
 gi|308119991|gb|EFO57253.1| exonuclease [Escherichia coli MS 145-7]
 gi|324008196|gb|EGB77415.1| exonuclease [Escherichia coli MS 57-2]
 gi|327536618|gb|AEA95451.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Dublin]
          Length = 289

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G     D+  + A    D +   +        +       DP+A+ + GIT 
Sbjct: 107 LVLDTETTGLG-ERDQVIELA--VTDIRGAVL-----LCTRLRPTVEIDPQAMGVHGITE 158

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            +   +     + +  + +  S     ++ +N+        +      F D   W  +  
Sbjct: 159 TELSNEP-TWTQVAPALARLLS--GRHLVIFNSSFDSRMLRQTAS--AFGDQLSWWQEQN 213

Query: 126 N 126
            
Sbjct: 214 C 214


>gi|104773741|ref|YP_618721.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116513740|ref|YP_812646.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300813077|ref|ZP_07093455.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313123346|ref|YP_004033605.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|103422822|emb|CAI97474.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116093055|gb|ABJ58208.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300495918|gb|EFK31062.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312279909|gb|ADQ60628.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325125397|gb|ADY84727.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
 gi|325684506|gb|EGD26670.1| exonuclease [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 178

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 29/188 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M  +FV  D+ET  +  A       A V V    + I+               D + V +
Sbjct: 1   MM-NFVAMDFETANQHPASA--CSLALVLVRES-KIIDRFYTV---INPQMAFDAQQVKV 53

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             IT +         AE   +I   F      ++  +N RFD    +    R        
Sbjct: 54  HDITAEDVAGAP-TMAEVWPKIQPLFQ--PGMLVAAHNARFDCNVMKQSLARYG------ 104

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                        +    Y            + G  +++L  ++   G+E  + H+A +D
Sbjct: 105 -------------IAEPHYLVLDSLKVSRELEPGLDNYQLNTVSDLLGVELWHHHNALSD 151

Query: 181 VYATLALV 188
             A   ++
Sbjct: 152 SEACAGIL 159


>gi|300024773|ref|YP_003757384.1| DNA polymerase III subunit epsilon [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526594|gb|ADJ25063.1| DNA polymerase III, epsilon subunit [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 237

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 58/197 (29%), Gaps = 29/197 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ D ET G D    DR      +       +I +   F      +     EA  + GI+
Sbjct: 4   IVLDTETTGLDPKTGDR---LIEIGGIEIINRIPTGVEFHRFINPERNVPMEAQNVHGIS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +   +   E  R    F       I+  +N +FD  +  +           +    
Sbjct: 61  TEFLIGKPL-FREVYRDFLAFI---GDDILVIHNAQFDVNFLNHELGLVGEKPLSF---- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVY 182
            +   D L + R  +   P+               L  L    GI+      H A  D  
Sbjct: 113 -DRVVDTLALARRRHPAGPN--------------SLDALCKRYGIDTSQRTKHGAIVDSL 157

Query: 183 ATLALVWLIREKKPKLF 199
               +   +  ++   F
Sbjct: 158 LLAEVYVELLGERQATF 174


>gi|195657335|gb|ACG48135.1| hypothetical protein [Zea mays]
          Length = 458

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 55/188 (29%), Gaps = 26/188 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            V  D ET      +    +F  V V  R+  ++ S          D LPDP A    GI
Sbjct: 15  IVFLDVETS-TPPCV--LLEFGAVVVCSRRLVEVSSFATLVRPANLDALPDPTA-RSNGI 70

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            + +  ++           G+N + FD     + F        +    
Sbjct: 71  TRGTLADAP-PFGDVADMVYDVL--HGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQ---- 123

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L ++   +               A   KL  LA   G+     H +  DV  
Sbjct: 124 -PKAMIDTLPLLTQCF------------GPRAGDMKLASLANYFGLG-KQRHRSLDDVKM 169

Query: 184 TLALVWLI 191
            + +    
Sbjct: 170 NIDVFKNC 177


>gi|156392522|ref|XP_001636097.1| predicted protein [Nematostella vectensis]
 gi|156223197|gb|EDO44034.1| predicted protein [Nematostella vectensis]
          Length = 461

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 41/257 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV++D ET G D + D   Q A        + + S  +F            EA    GI
Sbjct: 155 TFVMFDTETTGLDTSNDVIIQLAC--ASENGDPLHSRYMF----PGGRSIGSEATNAHGI 208

Query: 64  TPQK------ALRDGVVEAEFS------RRIHQFFSVPNT------CIIGYNNIRFDDYY 105
           +          L+DG   A+ +      R    F  +  +      C++ +    FD   
Sbjct: 209 SEAFIDGSRVLLKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRL 268

Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA- 164
             N   R+           G+   D + V+RA         +   +    +SFK + L+ 
Sbjct: 269 LINCLKRHNL--MNEFISTGSVLLDSVKVVRAS--------KKQEKSPFDSSFKKESLSA 318

Query: 165 ---LANGIEHVNAHDAKADVYATLALVWLIREKKPK---LFEYLYDYRNKNQLRKLIDIQ 218
                 G+     HDA+AD  A   ++  I +       +  ++   ++  +++      
Sbjct: 319 LHGHLFGVPIDRPHDAQADACALSKVLMKIPKNMSTSVIINNFMKQMKHSQEVKNRKFTL 378

Query: 219 NMTPLVHVSGMFGASRS 235
              P+        A   
Sbjct: 379 WGLPVSLFMIEKIAKSG 395


>gi|167031397|ref|YP_001666628.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1]
 gi|166857885|gb|ABY96292.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 236

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +   D+      V ++     I+  + F             +V I G+ P
Sbjct: 42  VVLDLETSGLNPNRDQVLSIGAVAIEDGA--IDFAQQFERTLHRPLQKTNASVLIHGLGP 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             AL  G   AE    +  F    ++ ++ ++       + + +  R   +S      + 
Sbjct: 100 S-ALAAGCDPAEALLDLLDFM--GDSPVLAFH-----APFDQRMLARALKESLGHRLQSV 151

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L  M        +               L D     G++    H A AD   T 
Sbjct: 152 FLDVAELAPMLNPDTVLREAG-------------LDDWVARFGLQVEERHHASADAQVTA 198

Query: 186 ALVWLIREKKPKL 198
            L  ++  +  + 
Sbjct: 199 ELALILFSQARRQ 211


>gi|255324960|ref|ZP_05366068.1| conserved hypothetical protein [Corynebacterium
          tuberculostearicum SK141]
 gi|255298020|gb|EET77329.1| conserved hypothetical protein [Corynebacterium
          tuberculostearicum SK141]
          Length = 98

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF 44
          FV+ D ET G +   DR  + A VR D  +  ++S     
Sbjct: 31 FVVIDTETTGFNKRYDRIIELAAVRADAYFNPVDSWHTLL 70


>gi|121997525|ref|YP_001002312.1| ribonuclease T [Halorhodospira halophila SL1]
 gi|121588930|gb|ABM61510.1| RNAse T [Halorhodospira halophila SL1]
          Length = 226

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 59/200 (29%), Gaps = 29/200 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-----STEVFFCKPADDYLPDPEAVFI 60
           V+ D ET G     D   Q A V +  + E         T     +P +    DP+A+ +
Sbjct: 34  VVVDVETGGLQAETDALLQIAAVILRAE-EGTGRLYPAETHTCHVQPFEGARIDPKALEL 92

Query: 61  TGITPQKALRDGVVEAEFSRR----IHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114
            GI P+  LR  V E +   +    + Q       N  ++  +N  FD  +      R  
Sbjct: 93  NGIDPEHPLRMAVPERDALGKMFNPVRQELRNTGCNRAVLVGHNAFFDLAFLNAAVTRTG 152

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           +    +   +      L  +       +                     A     +   A
Sbjct: 153 FKRNPFHPFSSFDTATLGGLAYGQTVLAKAVK-----------------AAGIEWDAKEA 195

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I   
Sbjct: 196 HSAIYDAEKTAELFCAIVNC 215


>gi|237731882|ref|ZP_04562363.1| exodeoxyribonuclease X [Citrobacter sp. 30_2]
 gi|226907421|gb|EEH93339.1| exodeoxyribonuclease X [Citrobacter sp. 30_2]
          Length = 226

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 67/265 (25%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 10  IIDTETCGL---QGGIVEIASVDV-VDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 62

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +   + +       +     +N  FD                   W    
Sbjct: 63  MVADKPWIE-DVIPQYY------GSEWYVAHNASFDRRV---------LPDMPGEW---- 102

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+      P           +    +Q  A  +       H A  D Y T  
Sbjct: 103 -----ICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPAGLHH------HRALYDCYITA- 150

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI   +   +               +      P +  +  F   +     ++ VA  
Sbjct: 151 -ALLIDIMQTSGW-----------TADQMVDITGRPALLTT--FTFGKYRGKPVSEVAER 196

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     +    +   L  
Sbjct: 197 DPGYLRWLFNNLDNMSPELRLTLKH 221


>gi|255655351|ref|ZP_05400760.1| putative exonuclease [Clostridium difficile QCD-23m63]
          Length = 258

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 32/226 (14%)

Query: 5   FVIYDYETF-GRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
           ++I+D E   G D   +             Q   +++D ++  I++    + KP      
Sbjct: 3   YIIFDLEFNQGFDKKFNKTISNKKCPFEIIQIGAIKLDSKFNIIDTFNS-YVKPTIYKEI 61

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            P    +T I             E      +F S  +  +  +              YRN
Sbjct: 62  HPFISRMTNIKDSDFNDSP-TFPEVYNNFIKFISSQDPILCVWGAGDL------KELYRN 114

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                  S     S  ++                    +    S  LQ+      ++   
Sbjct: 115 INYHKLPSNSLPKSYINI-----------QQHASKYFNNPAGKSIGLQNAISILELDEKM 163

Query: 174 A-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
           + H+A  D Y T  +   I      + +       K +  +  + +
Sbjct: 164 SYHNALNDAYYTAKVFIKIYNP-SIVPDIYLYTSIKPKTIRYSNKK 208


>gi|220915934|ref|YP_002491238.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953788|gb|ACL64172.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 207

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 53/191 (27%), Gaps = 13/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVFITGI 63
           +   D ET G D   D       V V +   ++  +     +P       DP ++    +
Sbjct: 19  YWALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSILAHQL 78

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P        +++  +       +     ++  +    D  + +  + R           
Sbjct: 79  VPHDVATAPSLDSVLADV--DLRAREGALLV--HQASLDVAFLKRAYRRCGRRWPE---- 130

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + ++             P          L       G+     HDA  D  A
Sbjct: 131 --PPVVDTVALLIKAAKRQRFVN--PDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVA 186

Query: 184 TLALVWLIREK 194
           T  L  ++R +
Sbjct: 187 TAELFLVLRRQ 197


>gi|296451339|ref|ZP_06893077.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296880311|ref|ZP_06904276.1| exonuclease superfamily protein [Clostridium difficile NAP07]
 gi|296259755|gb|EFH06612.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296428754|gb|EFH14636.1| exonuclease superfamily protein [Clostridium difficile NAP07]
          Length = 258

 Score = 64.8 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 32/226 (14%)

Query: 5   FVIYDYETF-GRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
           ++I+D E   G D   +             Q   +++D ++  I++    + KP      
Sbjct: 3   YIIFDLEFNQGFDKKFNKTISNEKCPFEIIQIGAIKLDSKFNIIDTFNS-YVKPTIYKEI 61

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            P    +T I             E      +F S  +  +  +              YRN
Sbjct: 62  HPFISRMTNIKDSDFNDSP-TFPEVYNNFIKFISSQDPILCVWGAGDL------KELYRN 114

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                  S     S  ++                    +    S  LQ+      ++   
Sbjct: 115 INYHKLPSNSLPKSYINI-----------QQHASKYFNNPAGKSIGLQNAISILELDEKM 163

Query: 174 A-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
           + H+A  D Y T  +   I      + +       K +  +  + +
Sbjct: 164 SYHNALNDAYYTAKVFIKIYNP-SIVPDIYLYTSIKPKTIRYSNKK 208


>gi|254571599|ref|XP_002492909.1| RNA exonuclease, required for U4 snRNA maturation [Pichia pastoris
           GS115]
 gi|238032707|emb|CAY70730.1| RNA exonuclease, required for U4 snRNA maturation [Pichia pastoris
           GS115]
          Length = 213

 Score = 64.8 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 9/128 (7%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYL 52
           +    V  D E  G D+  D   +   +  D+  E ++               K  +  +
Sbjct: 34  LQQPIVWIDCEMTGLDIYNDHIVEICCIITDQNLEVVDEGYESVIHYDNDVMSKMNEWCI 93

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +T    +       VE+E    I Q    PNT ++  N+I  D ++    F +
Sbjct: 94  EHHGTSGLTKKVLESTKTLPQVESELLSYISQHIE-PNTGVMAGNSIHMDKFFMYREFPK 152

Query: 113 NFYDSYRW 120
                +  
Sbjct: 153 VIDYLFYR 160


>gi|167645985|ref|YP_001683648.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
 gi|167348415|gb|ABZ71150.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 296

 Score = 64.8 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 50/185 (27%), Gaps = 32/185 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  D ET G D   D   + A +  R        E  E F            E   +TGI
Sbjct: 43  LFVDVETTGLDTRRDEIIELAMIPFRYGLVGRIYEVMEPFHGYRQPARPISAEITALTGI 102

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                     ++ E               ++  +N  FD                     
Sbjct: 103 DDAMVEGQ-SIDPEAVAA-----FAAPAALVIAHNASFDRRL------------------ 138

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 +    +     ++    Q   +D+G    KL  LA   G    + H A  D  A
Sbjct: 139 -----LERFSPVFQTKPWACSMSQIDWKDEGHEGVKLAYLAAGAGF-FYDRHRATNDCAA 192

Query: 184 TLALV 188
            + L+
Sbjct: 193 AIELL 197


>gi|269966857|ref|ZP_06180930.1| oligoribonuclease [Vibrio alginolyticus 40B]
 gi|269828524|gb|EEZ82785.1| oligoribonuclease [Vibrio alginolyticus 40B]
          Length = 219

 Score = 64.8 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  D     
Sbjct: 44  QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAIHQPEEELAKMDDWCTNT 103

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +     ++     + E +   +  +F           I  N+I  D  +      
Sbjct: 104 HTASGL----VERVRNSQISEQDAVAQTIEFLEKWVPKGASPICGNSIGQDRRFLYKHMP 159

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 160 ELEEFFHYR 168


>gi|262375943|ref|ZP_06069174.1| ribonuclease HI [Acinetobacter lwoffii SH145]
 gi|262309037|gb|EEY90169.1| ribonuclease HI [Acinetobacter lwoffii SH145]
          Length = 458

 Score = 64.8 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++V + GIT
Sbjct: 233 LILDTETTGFYYQDGDRIIEVGALEM-INRKLTGSSIHIYINPK---TPVGDSVNVHGIT 288

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            +      + E E S+ +  +    +   I  +N  FD  +    F R  +
Sbjct: 289 DEFLQDKPLFE-EISQVLFDYL---HGAEIIAHNATFDMNFLDMEFKRAGF 335


>gi|255689883|ref|ZP_05413558.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624488|gb|EEX47359.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 183

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 30/186 (16%)

Query: 4   HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +F+  D+ET  G         + AG+ V R  + +E+   +  +P          + I G
Sbjct: 5   NFIAIDFETATG---KRASICE-AGICVVRDGKIVET-RSWLVRPQ-GNSYSYWNMQIHG 58

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I P           E    I ++       ++  +N  FD    R+       +    ++
Sbjct: 59  IRPNDTADSPE-FPEVWTEISKYLKDIP--VLVAHNAAFDIGCIRHSLELYGMEKLEITY 115

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +RA       G              L  L     I +   H A  D  
Sbjct: 116 ---------YCSLRAARKLYSFGCN-----------SLDYLCDQFRIPYGQHHRAGDDAE 155

Query: 183 ATLALV 188
               L 
Sbjct: 156 MCARLF 161


>gi|221632413|ref|YP_002521634.1| putative DNA polymerase III, epsilon chain [Thermomicrobium roseum
           DSM 5159]
 gi|221156357|gb|ACM05484.1| putative DNA polymerase III, epsilon chain (EC ) [Thermomicrobium
           roseum DSM 5159]
          Length = 190

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 58/194 (29%), Gaps = 24/194 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           VI D ET G   + D+  + A   +D     +  T V           DP A+ + G++ 
Sbjct: 21  VILDTETTGIR-SQDQVIELA--VLDTHGNVLLETLV-----KPSCPIDPAALRVHGLSE 72

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                    E     R  +        I+ YN              R   +     +   
Sbjct: 73  AHLAHAP--EWPVVYRELRVIFDRARLIVTYNAPFD----------RRLIEQTCRCYGLS 120

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                    MR    ++      P  +      +L +     GI H  AH A AD  A  
Sbjct: 121 LPDLSWDCAMRRFAEYAGP----PPTESWRNYHRLSEALQRLGIPHPGAHRAAADAEACR 176

Query: 186 ALVWLIREKKPKLF 199
            LV  +   +P  F
Sbjct: 177 RLVRAMAAGQPLRF 190


>gi|328868531|gb|EGG16909.1| DNA polymerase III [Dictyostelium fasciculatum]
          Length = 782

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 55/221 (24%), Gaps = 33/221 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + +D ET G   + D   +   V +        + + +           PEA  +  +  
Sbjct: 403 ICFDLETTGFG-SEDSIIEVGAVELIDGCRTGLTFQSYA---KPKAPIHPEAAKVHNLNA 458

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                   +E      +  F       ++  +N+ FD         R+            
Sbjct: 459 YLLSSAPPIEF----VLASFMDFVGDALLVAHNLAFDHRMLIQEMMRSKIPIN------- 507

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE---HVNAHDAKADVY 182
                               +++  +     S+ L  ++    I+       H A  D  
Sbjct: 508 ------------RSKKCFCTMKYYRKVIKDVSYNLDAISSQLKIDKLLLRRTHGALVDSE 555

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
               +   +    P          +K   +   +     PL
Sbjct: 556 ILAIVYSHLTRIPPNY--ASLKLIDKMN-QAPWNQPQPQPL 593


>gi|288799990|ref|ZP_06405449.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333238|gb|EFC71717.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 163

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 49/187 (26%), Gaps = 28/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   +           V V R     +S      +P  +Y        + 
Sbjct: 1   MKDFVAIDFET--ANSERSSVCSIGIVIV-RNGVITDSFYSTI-QPEPNY-YSYWCTKVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T            E  ++I              +N RFD+   + +F     D     
Sbjct: 56  GLTKSDTEESP-CFHEIWKQIEPKI---GNLPFVAHNSRFDESCLKAVFRVYQMD----- 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                            Y F               + +L  +A   G    N H A AD 
Sbjct: 107 --------------YPDYIFFDTLAAARRVLPHLPNHQLHTVAQECGYCLDNHHHALADA 152

Query: 182 YATLALV 188
            A   + 
Sbjct: 153 EACAHIA 159


>gi|167465490|ref|ZP_02330579.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 190

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 32/190 (16%)

Query: 15  RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVV 74
            D   D+  + A +R D    +    +V   K        PE + +TGI        G+ 
Sbjct: 1   LDPTKDQITEIAAIRTDL-IREYGRLDVRITK-NSGTKLTPEIINLTGINESMMRG-GIP 57

Query: 75  EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDV 134
           E      +  F S   + ++ ++       +  +   R   +                  
Sbjct: 58  EELAIPLLACFMS--GSIVVAHH-----APFDLSFLARYLVEP----------------- 93

Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
                +            +   S  L  +A   GIE    H A ADV AT+ +   ++ +
Sbjct: 94  -----SSFVCTRVLSKLVEPGESASLAAVAERRGIELTGHHRAMADVEATVKIFQQLKAE 148

Query: 195 KPKLFEYLYD 204
              L    Y+
Sbjct: 149 ADALGIRYYN 158


>gi|329956618|ref|ZP_08297191.1| DNA polymerase III, epsilon subunit family protein [Bacteroides
           clarus YIT 12056]
 gi|328523990|gb|EGF51066.1| DNA polymerase III, epsilon subunit family protein [Bacteroides
           clarus YIT 12056]
          Length = 163

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 28/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V R  E +++      +P  +Y        + 
Sbjct: 1   MENFAAIDFET--ANEQRTSVCSVGVVIV-RDGEIVDNYYSLI-RPEPEY-YTYWNTRVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T        V      + I           +  +N  FD+         +   +   +
Sbjct: 56  GLTLADTACAPV-FPTVWQEIAPRIE---GLTLVAHNKAFDE---------SCLKAVFRT 102

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      +D    ++A                G   ++L  +A   G      H A AD 
Sbjct: 103 YGMDYPDYDFRCTLQASR----------RAIKGLPDYQLHTVAAWCGYRLEQHHHALADA 152

Query: 182 YATLALVWLI 191
            A   +   +
Sbjct: 153 EACAWIARQV 162


>gi|111022071|ref|YP_705043.1| DNA polymerase III subunit epsilon [Rhodococcus jostii RHA1]
 gi|110821601|gb|ABG96885.1| DNA polymerase [Rhodococcus jostii RHA1]
          Length = 231

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 28/113 (24%), Gaps = 7/113 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
              +D ET G D    R        VD         E        +      A  + GI+
Sbjct: 9   ICAFDLETTGPDPTDARIVSACIAVVDAH-----HFESRTWLLDPEVPIPQGASDVHGIS 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFY 115
            + A   G   A     I +      T    +   N  +D         R   
Sbjct: 64  TEYARAHGQDYATGYGEIREALHDAWTRDHAVVAFNASYDLTVMHTEGLRLGL 116


>gi|90018234|gb|ABD83930.1| hypothetical protein [Ictalurus punctatus]
          Length = 216

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 57/195 (29%), Gaps = 33/195 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              V  D ET G + +     Q + +  +R +                   D  A  +TG
Sbjct: 32  ETLVFXDLETTGLNTSECDIVQLSAISGERSFNV---------YILPRCPIDHGASRVTG 82

Query: 63  ITPQ----KALRDG---VVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           +T               V   E       F        ++G+N  RFD      I     
Sbjct: 83  LTIHSRKLLLHGQPMQTVPLREALTSFISFLKTFSRPVLVGHNCKRFDRPILLRIMTE-- 140

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           ++  +   D  ++  D L + R ++       Q+  +     S++              A
Sbjct: 141 FNLLKEFQDVVSAYLDTLLLSREMFMLQKYSQQFLVQYFLQKSYR--------------A 186

Query: 175 HDAKADVYATLALVW 189
           HDA  DV     L  
Sbjct: 187 HDATEDVRTLQELFR 201


>gi|52424757|ref|YP_087894.1| ribonuclease T [Mannheimia succiniciproducens MBEL55E]
 gi|52306809|gb|AAU37309.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 223

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 57/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D     + +    F  KP +    +PE++   G
Sbjct: 30  VIIDVETAGFNAKTDALLELAAITLKMDENGLLVPDQKCHFHIKPFEGANINPESIKFNG 89

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E+E    + Q              II  +N  FD  +      R    
Sbjct: 90  IDIDNPLRGAVPESEAITGLFQMVRKGQKNAGCQRSIIVAHNATFDQSFVMAAADRTKIK 149

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L  +M                            A     +   AH 
Sbjct: 150 RNPFHPFSSFDTASLSGLMFGQTVLVKACQ-----------------AAHIAFDGKQAHS 192

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 193 ALYDTERTAELFCYMVNH 210


>gi|146386891|pdb|2IS3|A Chain A, Crystal Structure Of Escherichia Coli Rnase T
 gi|146386892|pdb|2IS3|B Chain B, Crystal Structure Of Escherichia Coli Rnase T
 gi|146386893|pdb|2IS3|C Chain C, Crystal Structure Of Escherichia Coli Rnase T
 gi|146386894|pdb|2IS3|D Chain D, Crystal Structure Of Escherichia Coli Rnase T
          Length = 215

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 56/200 (28%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  + D Q     ++T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKXDEQGWLXPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E E    I +           N  I   +N  FD  +      R    
Sbjct: 80  IDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIXVAHNANFDHSFXXAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L       G +     A
Sbjct: 140 ------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTAGXDFDSTQA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAVLFCEIVNR 200


>gi|283955874|ref|ZP_06373364.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792534|gb|EFC31313.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 253

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  V+     +   V++ +  ++I   + F  K  +          +TGIT
Sbjct: 72  FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  A+       F       I   +N+RFD  +         +         
Sbjct: 126 YEMVENA-LSLAKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   ++  +                  +  +KL+ L    G+E+ + H A  D  A 
Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220

Query: 185 LALVWLI 191
             +    
Sbjct: 221 AEIFKYC 227


>gi|229593001|ref|YP_002875120.1| putative DNA poymerase [Pseudomonas fluorescens SBW25]
 gi|229364867|emb|CAY52927.1| putative DNA poymerase [Pseudomonas fluorescens SBW25]
          Length = 235

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 23/194 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V +        S          +    P +V I G+ P
Sbjct: 42  VVLDLETSGLNLNRDQVLSIGAVVI-EDGAVDFSQLFERTLQRAETKLSP-SVLIHGLGP 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E    +  F +      +   +  FD +        +        + + 
Sbjct: 100 S-AIAAGSDPVEA---LLDFMAFVGDSPLLAFHAPFDQHMLCRALKDSLGYRLAHPFLD- 154

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D+  ++         G              L D      +     H A AD  AT 
Sbjct: 155 --VADIAPLLCPQAHIREAG--------------LDDWINHFNLHVGERHHASADALATA 198

Query: 186 ALVWLIREKKPKLF 199
            L+ ++  +     
Sbjct: 199 ELMLILFSRARAQH 212


>gi|91228387|ref|ZP_01262313.1| oligoribonuclease [Vibrio alginolyticus 12G01]
 gi|91188028|gb|EAS74334.1| oligoribonuclease [Vibrio alginolyticus 12G01]
          Length = 181

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  D     
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAIHQPEEELVKMDDWCTNT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +     ++     + E +   +  +F           I  N+I  D  +      
Sbjct: 66  HTASGL----VERVRNSQISEQDAVAQTIEFLEKWVPKGASPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 122 ELEEFFHYR 130


>gi|134044532|ref|YP_001101863.1| putative exonuclease [Yersinia ruckeri]
 gi|133904895|gb|ABO40912.1| putative exonuclease [Yersinia ruckeri]
          Length = 289

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 13/121 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G     D+  + A    D +   +        +       DP+A+ + GI  
Sbjct: 107 LVLDTETTGLG-ERDQVIELA--VTDIRGAVL-----LCTRLRPTVEIDPQAMGVHGINE 158

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            +   +     + +  + +  S     ++ +N+        +      F D   W  +  
Sbjct: 159 AELSNEP-TWNQVAPALARLLS--GRHLVIFNSSFDSRMLRQTAS--AFGDQLSWWQEQN 213

Query: 126 N 126
            
Sbjct: 214 C 214


>gi|322494373|emb|CBZ29674.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 347

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 58/231 (25%), Gaps = 48/231 (20%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--------------------------------RVDRQ 33
           V+ D ET G     D   + A                                   ++  
Sbjct: 108 VVVDLETTGFSATADEILEVACAELRWTPSSHTSSTGPKHTAPCAPSLGEQSVCGVIEGL 167

Query: 34  WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCI 93
           W +       + +P+D       A  + GIT +            +  +  +  +     
Sbjct: 168 WTRGGRVFHRYVRPSDPRRISAAATAVHGITWETVQHC-SPWPVVASELVAYMVLVGAD- 225

Query: 94  IGYNNIRFDDYYSRNIFYRN-FYDSYRWSWDNGNSRWDLLDVMRAIYAFS-------PDG 145
            G  +       ++   +R            + ++R+    + R  Y             
Sbjct: 226 -GPFSASAQLEAAQAGGHRAVQLPPLVAHNASFDARFLEHHLRRCGYQIFWQPQYPLTCT 284

Query: 146 IQWPSRDDGATSFKLQDLALANGIE-----HVNAHDAKADVYATLALVWLI 191
            QW        +  L  L    GI+       N HDA  D   T  L   +
Sbjct: 285 RQWAQVAYPHLANNLDALCAFLGIDGAADRAANGHDALTDATLTALLFLQM 335


>gi|260893685|ref|YP_003239782.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
 gi|260865826|gb|ACX52932.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
          Length = 233

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 54/201 (26%), Gaps = 28/201 (13%)

Query: 5   FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           FV +D ET G    A D       VR+     ++     F           P    +TGI
Sbjct: 47  FVAFDLETTGLKPGAGDEIIALGAVRLR--GNELL-YPAFDQLVRPGRRVPPLVEKLTGI 103

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +           A        + S      +G+N      + ++                
Sbjct: 104 SSGLLRYAP-PLASVLPFFLGYLSRGFP--LGFNVAFDLAFLNQA--------LKPHGRL 152

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +  +  D+  V RA+ A                   + ++A    +     H A  D   
Sbjct: 153 SEQAVLDVWTVARALDARCEHAT-------------MDEIASFLKVNLEGRHTALGDALI 199

Query: 184 TLALVWLIREKKPKLFEYLYD 204
              +   +RE+  +       
Sbjct: 200 HARMWLKLRERLKEKGVRTLR 220


>gi|86157195|ref|YP_463980.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773706|gb|ABC80543.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 207

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 53/191 (27%), Gaps = 13/191 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVFITGI 63
           +   D ET G D   D       V V +   ++  +     +P       DP ++    +
Sbjct: 19  YWALDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSIRAHQL 78

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P        +++  +       +     ++  +    D  + +  + R           
Sbjct: 79  VPHDVATAPSLDSVLADV--DLRAREGALLV--HQASLDVAFLKRAYRRCGRRWPE---- 130

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D + ++             P          L       G+     HDA  D  A
Sbjct: 131 --PPVVDTVALLIKAAKRQRFVN--PDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVA 186

Query: 184 TLALVWLIREK 194
           T  L  ++R +
Sbjct: 187 TAELFLVLRRQ 197


>gi|260361286|ref|ZP_05774394.1| oligoribonuclease [Vibrio parahaemolyticus K5030]
 gi|308114248|gb|EFO51788.1| oligoribonuclease [Vibrio parahaemolyticus K5030]
          Length = 148

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  D     
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +     ++     + E +   +  +F           I  N+I  D  +      
Sbjct: 66  HTASGL----VERVRNSKISEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 122 ELEEYFHYR 130


>gi|213964373|ref|ZP_03392587.1| exonuclease [Capnocytophaga sputigena Capno]
 gi|213952985|gb|EEB64353.1| exonuclease [Capnocytophaga sputigena Capno]
          Length = 164

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 51/192 (26%), Gaps = 28/192 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N FV  D+ET   +           V V    E +++      KPA ++        + 
Sbjct: 1   MNSFVALDFET--ANQYRSSVCSIGLVFV-ENNEIVDTYYQLI-KPAPNF-YSYFNTQVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++        +   E    I           +  +N  FD+   R +        +   
Sbjct: 56  GLSQYDTENAPL-FPEVWTEILPKIKD---LPLVAHNSMFDEGCLREVLAYYALPQHTNP 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                              F               + KL  ++   G +    H A AD 
Sbjct: 112 -------------------FFCTLRAARKSLPQLVNHKLNTVSAYFGFDLKQHHHALADA 152

Query: 182 YATLALVWLIRE 193
            A   +   + +
Sbjct: 153 EACAHIALELFK 164


>gi|309810273|ref|ZP_07704115.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308435765|gb|EFP59555.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 534

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 51/184 (27%), Gaps = 27/184 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D+ET   +     P     VR  R    ++        PA     D     + GI 
Sbjct: 6   FTAIDFET--ANSYRGSPCSVGLVRF-RGGRPVDRAYWLIRPPAAASHFDAFNTQLHGID 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                        ++ R+ +        I+  +N  FD    R     +           
Sbjct: 63  ADTVRDQPS----WAGRLTEIVEFIGDDIVVSHNASFDIGVIRYACAADGI--------- 109

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R D    + A             R     S++L  +  A G E  + H A AD  A 
Sbjct: 110 AWPRIDFFCTLVAAR-----------RHLRLPSYRLPFVLDAYGAEVNDHHHALADAEAA 158

Query: 185 LALV 188
             + 
Sbjct: 159 GRVA 162


>gi|298708153|emb|CBJ30494.1| ATP-dependent DNA helicase RecG [Ectocarpus siliculosus]
          Length = 1002

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 22/184 (11%)

Query: 14  GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFITGITPQKALRDG 72
           G     DR  Q A  +V        S   F        +   P    ITGITP+    +G
Sbjct: 755 GLRAKEDRVIQLAA-KVLGSENPRHSFAEF---VDPGAVGVPPRVREITGITPEILAANG 810

Query: 73  -VVEAEFSRRIHQFFS-----------VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
                +       + S                +   +N +FD  + +    R  +  +  
Sbjct: 811 ARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEEVSRCGFSRFMM 870

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA--TSFKLQDLALA-NGIEHVNAHDA 177
             D G     ++D +R +   S    +           +FKL  +     G E  +AH+A
Sbjct: 871 GQDMG--VVCIVDSLRCLKESSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNA 928

Query: 178 KADV 181
             DV
Sbjct: 929 MGDV 932


>gi|297733948|emb|CBI15195.3| unnamed protein product [Vitis vinifera]
          Length = 447

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 58/191 (30%), Gaps = 27/191 (14%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET      + +     +F  + V  R+  ++ES      +P D  L    +V  
Sbjct: 10  IAFFDVETT-VPTRVGQGFAILEFGAILVCPRKLVELESYSTL-VRPHDLSLVSSLSVRC 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT    +       + + R++           G+N +RFD         R  +     
Sbjct: 68  NGITRDAVVSAP-NFRDIADRVYDIL--HGRIWAGHNILRFD-----CARIREAFAEIGR 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L ++                   A   K+  LA   G+     H +  D
Sbjct: 120 PAPEPKGSIDSLALL------------TQRFGRRAGDMKMATLATYFGLGQ-QTHRSLDD 166

Query: 181 VYATLALVWLI 191
           V   L ++   
Sbjct: 167 VRMNLEVLKYC 177


>gi|225457353|ref|XP_002281793.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 497

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 58/191 (30%), Gaps = 27/191 (14%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET      + +     +F  + V  R+  ++ES      +P D  L    +V  
Sbjct: 10  IAFFDVETT-VPTRVGQGFAILEFGAILVCPRKLVELESYSTL-VRPHDLSLVSSLSVRC 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT    +       + + R++           G+N +RFD         R  +     
Sbjct: 68  NGITRDAVVSAP-NFRDIADRVYDIL--HGRIWAGHNILRFD-----CARIREAFAEIGR 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L ++                   A   K+  LA   G+     H +  D
Sbjct: 120 PAPEPKGSIDSLALL------------TQRFGRRAGDMKMATLATYFGLGQ-QTHRSLDD 166

Query: 181 VYATLALVWLI 191
           V   L ++   
Sbjct: 167 VRMNLEVLKYC 177


>gi|147817752|emb|CAN66660.1| hypothetical protein VITISV_031720 [Vitis vinifera]
          Length = 535

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 58/191 (30%), Gaps = 27/191 (14%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET      + +     +F  + V  R+  ++ES      +P D  L    +V  
Sbjct: 10  IAFFDVETT-VPTRVGQGFAILEFGAILVCPRKLVELESYSTL-VRPHDLSLVSSLSVRC 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT    +       + + R++           G+N +RFD         R  +     
Sbjct: 68  NGITRDAVVSAP-NFRDIADRVYDIL--HGRIWAGHNILRFD-----CARIREAFAEIGR 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L ++                   A   K+  LA   G+     H +  D
Sbjct: 120 PAPEPKGSIDSLALL------------TQRFGRRAGDMKMATLATYFGLGQ-QTHRSLDD 166

Query: 181 VYATLALVWLI 191
           V   L ++   
Sbjct: 167 VRMNLEVLKYC 177


>gi|167624484|ref|YP_001674778.1| exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis
           HAW-EB4]
 gi|167354506|gb|ABZ77119.1| Exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis
           HAW-EB4]
          Length = 205

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 51/185 (27%), Gaps = 20/185 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D E  G D   D+      + +     ++  ++              ++  I GI   +
Sbjct: 25  VDLEMTGLDCQFDQILSIGLIPIHNGLLQVAKSQHLLVSIDGSV---GDSATIHGILDNQ 81

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
             +  V   +       F       ++  ++   D  + +    R       +       
Sbjct: 82  LTQA-VSAKQAMAW---FLEQSKGHVLVAHHAPLDLCFLKTEIQRC------YGQTMQFV 131

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D + V +       D I+         + +L       G+    AH+A  D  A   L
Sbjct: 132 AIDTMAVEKKRLLRQHDVIK-------EGTLRLDACRQRYGLPVYTAHNAAVDALACGEL 184

Query: 188 VWLIR 192
           +    
Sbjct: 185 LLAQM 189


>gi|315057872|gb|ADT72201.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 256

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  V+     +   V++ +  ++I   + F  K  +          +TGIT
Sbjct: 72  FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          +       F       I   +N+RFD  +         +         
Sbjct: 126 YEMVENAP-SLTKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   ++  +                  +  +KL+ L    G+E+ + H A  D  A 
Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220

Query: 185 LALVWLI 191
             +    
Sbjct: 221 AEIFKYC 227


>gi|310767562|gb|ADP12512.1| ribonuclease T [Erwinia sp. Ejp617]
          Length = 219

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 57/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A V  ++D       + T  F  +P    +  PEA+   G
Sbjct: 20  VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLGKDDTLHFHVEPFAGSVLLPEALTFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  ++  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +       +                     A     +   AH 
Sbjct: 140 RNPFHPFVTFDTAALSGLALGQTVLAKACH-----------------AAGMAFDSAQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 183 ALYDTLQTADLFCELVNR 200


>gi|149194547|ref|ZP_01871643.1| Exonuclease [Caminibacter mediatlanticus TB-2]
 gi|149135291|gb|EDM23771.1| Exonuclease [Caminibacter mediatlanticus TB-2]
          Length = 204

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 46/190 (24%), Gaps = 20/190 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G D   D       V V      +      + K         +++ I  ITP
Sbjct: 31  VVIDTETTGLDTKKDEIISIGAVIVKNNKILLSKKFHIYVK--TTKKISNDSIKIHKITP 88

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  V   E       F    N  I+GY         ++               +  
Sbjct: 89  TTLKNA-VETKEAIYEFLNFIQ--NRPIVGYYLEFDIAMINKLTKKYLGIKLSNRQIEVS 145

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +  +D                +           +   +     +     H+A  D   T 
Sbjct: 146 SLYYD---------------KKIGIIPQKNVDLRFDSIMKDLNLPIFKKHNALNDAIMTA 190

Query: 186 ALVWLIREKK 195
            +   +  K 
Sbjct: 191 LIYIKLNFKN 200


>gi|194365080|ref|YP_002027690.1| ribonuclease T [Stenotrophomonas maltophilia R551-3]
 gi|194347884|gb|ACF51007.1| ribonuclease T [Stenotrophomonas maltophilia R551-3]
          Length = 194

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 61/207 (29%), Gaps = 31/207 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYL 52
           M+  F     V+ D ET G D   +   + A V ++     +     T      PA+   
Sbjct: 1   MSQRFRGFLPVVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLE 60

Query: 53  PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            DP+++ +TGI        A  +          +            I+  +N  FD  + 
Sbjct: 61  IDPKSLEVTGIILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFV 120

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R  +    +      S +D + +    Y              G T       A  
Sbjct: 121 NAAVARTGHKRNPFH---PFSVFDTVTLAGIAY--------------GQTVLARAANAAG 163

Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
            G +   AH A  D   T  L   I  
Sbjct: 164 LGWDANEAHSAVYDTEQTARLFCTIAN 190


>gi|147921738|ref|YP_684442.1| hypothetical protein LRC94 [uncultured methanogenic archaeon RC-I]
 gi|110619838|emb|CAJ35116.1| hypothetical protein LRC94 [uncultured methanogenic archaeon RC-I]
          Length = 191

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 15/133 (11%)

Query: 2   TNHFVIYDYETFGR-------DVALDRPAQFAGVR--VDRQWEKI---ESTEVFFCKPAD 49
                + D E  G         V  D P     +   VD + + I   +S       P  
Sbjct: 1   MEFLTVVDLEMTGLGKFDKANPVDDDYPVSIGIILAGVDEEGKAIRCLDSFHTLIRIPNP 60

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
             +   E      I P+          E   +I +F+           N R D ++   +
Sbjct: 61  SKV--EETSIFHHIYPEDLEAAPKP-KEVCGQIRKFYEKHGEIPAAAWNHRVDRHFVDIL 117

Query: 110 FYRNFYDSYRWSW 122
           F     +S    W
Sbjct: 118 FKMGKMESPIRKW 130


>gi|92113107|ref|YP_573035.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM
           3043]
 gi|91796197|gb|ABE58336.1| Exonuclease [Chromohalobacter salexigens DSM 3043]
          Length = 241

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 46/189 (24%), Gaps = 12/189 (6%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G D           V  D    +I   +  +            ++    IT  + 
Sbjct: 55  DMETTGLDEQRHAIVSIGLVPFD--LRRIRMAQRRYWIVRPPRPLSERSITFHHITHTEI 112

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
            +      +    + +        ++  +    +  +          +            
Sbjct: 113 EQAP----DLDEILDELLEAMAGHVMVVHYRHIERTFLNAAVKARRGEGIH------FPV 162

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            D + +   ++                 S +L D     G+    AH A  D  AT  L+
Sbjct: 163 IDTMSLEARLHRQPLWARFRRWMGRPPASIRLPDSRTRYGLPPYQAHHALIDALATAELL 222

Query: 189 WLIREKKPK 197
                   +
Sbjct: 223 QAQIAHHYR 231


>gi|311894879|dbj|BAJ27287.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 257

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 7/109 (6%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G DV  DR    A V    Q     +  V              A  + GI+ ++
Sbjct: 15  FDTETTGVDVERDRIVSAALVV---QSAPAGTATVRTWLADPGVPIPESARAVHGISDER 71

Query: 68  ALRDGVVEAEFSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRN 113
               G      +  + +     +     ++  N   +D         R+
Sbjct: 72  VRAHGRPPRAVALEVARALAEQARAGVPLVVMNAP-YDLTLLDRELRRH 119


>gi|86153724|ref|ZP_01071927.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612917|ref|YP_001000159.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005117|ref|ZP_02270875.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85842685|gb|EAQ59897.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250067|gb|EAQ73025.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 253

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  V+     +   V++ +  ++I   + F  K  +          +TGIT
Sbjct: 72  FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIARFQSF-VKVKE---IPENITELTGIT 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+       F       I   +N+RFD  +         +         
Sbjct: 126 YEMVENAP-SLAKVLSDFRLFLKDS---IFVAHNVRFDYSFISRALNECGFGILLN---- 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   ++  +                  +  +KL+ L    G+E+ + H A  D  A 
Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220

Query: 185 LALVWLI 191
             +    
Sbjct: 221 AEIFKYC 227


>gi|74196748|dbj|BAE43110.1| unnamed protein product [Mus musculus]
          Length = 237

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      V   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|27229283|ref|NP_077195.2| oligoribonuclease, mitochondrial precursor [Mus musculus]
 gi|78100196|sp|Q9D8S4|ORN_MOUSE RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
           exonuclease 2 homolog; AltName: Full=Small fragment
           nuclease; Flags: Precursor
 gi|26357838|dbj|BAB25219.2| unnamed protein product [Mus musculus]
 gi|148693756|gb|EDL25703.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Mus musculus]
          Length = 237

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      V   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|237640346|ref|YP_002891201.1| exonuclease family protein [Escherichia coli]
 gi|229561565|gb|ACQ77768.1| exonuclease family protein [Escherichia coli]
          Length = 289

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 13/121 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G     D+  + A    D +   +        +       DP+A+ + GIT 
Sbjct: 107 LVLDTETTGLG-ERDQVIELA--VTDIRGAVL-----LCTRLRPTVEIDPQAMGVHGITE 158

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            +   +     + +  + +  S     ++ +N         +      F D   W  +  
Sbjct: 159 TELSNEP-TWTQVAPALARLLS--GRHLVIFNPSFDSRMLRQTAS--AFGDQLSWWQEQN 213

Query: 126 N 126
            
Sbjct: 214 C 214


>gi|330685586|gb|EGG97232.1| exonuclease [Staphylococcus epidermidis VCU121]
          Length = 184

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 56/203 (27%), Gaps = 31/203 (15%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+ + FV  D+ET   +           V+V    +  ES          +     + + 
Sbjct: 1   MSENAFVALDFET--ANGKRTSICSVGMVKVIEN-QITESFHTL---VNPNDYFSEQNIS 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI P+               + QF        +  +N  FD             ++  
Sbjct: 55  VHGIHPEDVASSPNFSY-VYPYMMQFIDQ---LPVVAHNAAFDMNVLHQSIQAIGLETPH 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            ++                        Q   R   +  + L+ +     ++    HDA  
Sbjct: 111 LTY--------------------FCSYQLAKRTVQSHRYGLKHMMDYYQLDFHGHHDALN 150

Query: 180 DVYATLALVWLIREKKPKLFEYL 202
           D  A   + + + +    L   L
Sbjct: 151 DAKACAMITFRLLKHYDDLPSML 173


>gi|315655203|ref|ZP_07908104.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490458|gb|EFU80082.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 240

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 21/194 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G   + DR A  + +R         +    +          P A  + G+T + 
Sbjct: 19  FDTETTGVFTSRDRIATVSLIR-----RINGTDSPRYWIINPGVPMPPAAGRVNGLTDEY 73

Query: 68  ALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
              +GV      E    I          ++G+N   FD         R+   + R     
Sbjct: 74  LQANGVDPRVGLEEVAVIIAETMRRGVPVVGFNV-TFDFAILEAELARHDLPTLR--QRL 130

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYA 183
             S   ++D +                        L  +  A  +    + H+A+ADV A
Sbjct: 131 EGSVEPIVDPLVLDRIL---------DRYRKGKRNLASVCTAYDLPLREDFHNAQADVSA 181

Query: 184 TLALVWLIREKKPK 197
           TL L+  + E+ P+
Sbjct: 182 TLDLLGAMSERFPE 195


>gi|304437027|ref|ZP_07396990.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369978|gb|EFM23640.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 180

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    +++D ET G     D     A V        +  T V            P+A  I
Sbjct: 1   MQEKVLVFDTETTGFRSD-DEVLTLAVV------NGVGETMVDGMYAPARKAEWPDAERI 53

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I+P        + A     + + F+ P+T ++GYN        +++          R 
Sbjct: 54  NRISPAMVAGCDPILAH-REELERLFNAPDTLLVGYNTEFDIRLLAQSG--------IRI 104

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +  N +         R +      G +W    + A  ++           +  AH A AD
Sbjct: 105 TNPNRHDVMLAFSAFRKVPDARRGGYRWWKLTECADYYR-------YDWGNTVAHGALAD 157

Query: 181 VYATLALVWLIRE 193
             ATL     ++E
Sbjct: 158 TLATLFCYQKMKE 170


>gi|222824026|ref|YP_002575600.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100]
 gi|222539248|gb|ACM64349.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100]
          Length = 254

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D E+ G  +   +  +   V++ + +++I+  E F                +TGI+
Sbjct: 72  FCVVDIESTGG-IKSGQILEIGAVKI-QNYKEIDRFESFV----KVESIPENITELTGIS 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                               F       I   +N+RFD ++     Y N +         
Sbjct: 126 LDMVENAP-SLKTVLNNFKLFLKDS---IFVAHNVRFDYHFISKAMYENDFGVLLN---- 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   +D+ +                  +  + L  L     IE    H A +D  A 
Sbjct: 178 --RRLCTIDLAKKC--------------IESPKYGLDALKEFLCIE-SKHHRALSDALAA 220

Query: 185 LALVWLI 191
             ++   
Sbjct: 221 SEILKYC 227


>gi|255743723|ref|ZP_05417681.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101]
 gi|255738584|gb|EET93971.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101]
 gi|259156231|gb|ACV96178.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ban5]
 gi|259156377|gb|ACV96322.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind5]
          Length = 301

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 72/237 (30%), Gaps = 15/237 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G     +   +   V+V         +   +V                 +TG
Sbjct: 53  VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +      + +A  +  +       +  ++  +N +FD  +    F    + S+  S 
Sbjct: 113 ITDEIVQGQRIDDAMVASWL------SDDPLVVAHNAQFDRPFFEKRFAAFGHLSWACSA 166

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT------SFKLQDLALANGIEHVNAHD 176
              + +    +  +  Y     G  +               F L   ++AN +   +   
Sbjct: 167 SGIDWKALGFESRKLEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRT 226

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
                +     V    +++   +       NK+  R++ + +      ++  ++   
Sbjct: 227 VLVRAFGAPFDVKDYLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRG 283


>gi|262393026|ref|YP_003284880.1| oligoribonuclease [Vibrio sp. Ex25]
 gi|262336620|gb|ACY50415.1| oligoribonuclease [Vibrio sp. Ex25]
          Length = 181

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  D     
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAIHQPEEELAKMDDWCTNT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +     ++     + E +   +  +F           I  N+I  D  +      
Sbjct: 66  HTASGL----VERVRNSKISEQDAVAQTIEFLEKWVPKGASPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 122 ELEEFFHYR 130


>gi|87121336|ref|ZP_01077226.1| ribonuclease T [Marinomonas sp. MED121]
 gi|86163493|gb|EAQ64768.1| ribonuclease T [Marinomonas sp. MED121]
          Length = 216

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 64/208 (30%), Gaps = 26/208 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +R+D   E  I  T  F  +P +    +  A+  TG
Sbjct: 14  VVIDVETAGFNNKTDALLEIAASILRMDENGELYIHETIEFNVRPFEGANLEKSALEFTG 73

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  VVEAE   +I                I+  +N  FD  +      R    
Sbjct: 74  IDPFDPERKDVVEAEVLGQIFSKVRKELKSVGCKRAILVGHNAAFDHGFLNAAIERCDIK 133

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L  +       +                     A A    +  AH 
Sbjct: 134 RNPFHPFSSFDTASLAGLAFGQTVLAKACE-----------------AAAIPFSNAEAHS 176

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204
           AK D   T  L   I  +  +L  +   
Sbjct: 177 AKYDTEKTAELFCEIVNRWKRLGGWSLA 204


>gi|157962392|ref|YP_001502426.1| ribonuclease T [Shewanella pealeana ATCC 700345]
 gi|157847392|gb|ABV87891.1| ribonuclease T [Shewanella pealeana ATCC 700345]
          Length = 232

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 76/240 (31%), Gaps = 35/240 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYL 52
           M N F     V+ D ET G +   D   + A   +++D +    ++ T  F  +P +   
Sbjct: 10  MKNRFRGYFPVVIDVETAGFNAKTDALLEIAVSMLKMDDEGVLALDKTLHFNIEPFEGAN 69

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS 106
            +PEA+  TGI P   LR  V E E    I +           +  II  +N  FD  + 
Sbjct: 70  LEPEALAFTGIDPTSPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFV 129

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                RN       +  +  + +D   +       +                 L      
Sbjct: 130 TQAIERNALK---RTPFHPFATFDTAALAGLAIGHTV----------------LAKACAM 170

Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
            GI   N  AH A  D   T  L  LI  +   L  + +      +       +      
Sbjct: 171 AGIPFDNREAHSALYDTERTAELFCLIVNRWKALGGWPFIADETEEADTNSSEEKAEDYT 230


>gi|261253702|ref|ZP_05946275.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260937093|gb|EEX93082.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 223

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 50/186 (26%), Gaps = 25/186 (13%)

Query: 14  GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGV 73
           G      R  +   V +    +       F      D     EAV + GIT +  +    
Sbjct: 6   GPHYQGHRIIEIGAVEI-INRKLTGRH--FHVYIKPDRDIQSEAVEVHGITDEFLVDKP- 61

Query: 74  VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLD 133
              E+     +F        +  +N  FD  +    F     D      D+     D L 
Sbjct: 62  ---EYQDVHAEFLDFIKGAELVAHNAPFDTGFMDYEFG--MLDPTIGKTDDYCKVTDTLA 116

Query: 134 VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYATLALVWLI 191
           + + I+                    L  L    GI+  H   H A  D      +  L+
Sbjct: 117 MAKKIFPG--------------KRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLM 162

Query: 192 REKKPK 197
              +  
Sbjct: 163 TGGQTS 168


>gi|68536400|ref|YP_251105.1| DNA polymerase III subunit epsilon [Corynebacterium jeikeium K411]
 gi|68263999|emb|CAI37487.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium K411]
          Length = 227

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 46/172 (26%), Gaps = 30/172 (17%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A V +  +  +    E+             +A  + GIT + 
Sbjct: 17  FDLETTGVDPKTARIVTSALVTI--KGRERNDIEMLA---DPGVEIPQQASDVHGITTEY 71

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               G    E   +  +           +I YN                       S+  
Sbjct: 72  VREHGQDHGEVLAKTIEGIRAAWRSGATLIVYNAAYDLSVLRALE----------PSFTV 121

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +D   V RA   +                  L+ +    G+   NAH+
Sbjct: 122 DGPVFDPYVVDRAKDQYR------------KGKRTLESVCQHYGVTLDNAHE 161


>gi|330448832|ref|ZP_08312478.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328493023|dbj|GAA06975.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 376

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 31/180 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D   +   + A V  DR+ + + +T V   +         EA  I GI+P
Sbjct: 2   IYLDTETTGLDPDFNEVLEIAIV--DREGKILLNTLVKPQRNESW----HEAQVIHGISP 55

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +       +E +    I+         + G +   ++  +                + + 
Sbjct: 56  EMVANAPTME-DLKPTIND-------IVKGQHVRIYNKEFDAA-------------FVDL 94

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
           ++      VMR +  F+     W          +L + A          AH A AD   T
Sbjct: 95  SAAEKTSCVMRDMAKFNGYWNNW---HCDYRLLRLSEAASKMSLSWDGTAHRALADTQMT 151


>gi|50914940|ref|YP_060912.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS10394]
 gi|50904014|gb|AAT87729.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes
           MGAS10394]
          Length = 208

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 18  DTYIAFDLE---FNTVNDVSHIIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 71  TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167

Query: 181 VYATLALVWLIREKKPK 197
              T A+     E    
Sbjct: 168 ARMTAAIYKSFLETDTN 184


>gi|300858788|ref|YP_003783771.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686242|gb|ADK29164.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206493|gb|ADL10835.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis C231]
 gi|302331048|gb|ADL21242.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276735|gb|ADO26634.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 453

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 48/172 (27%), Gaps = 26/172 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D ET   +       Q   V+V +     +  E     PA      P  + I GI 
Sbjct: 106 FAAVDVET--ANDDWGSICQIGVVKV-KDGVITDKCEWLCQPPAAINHFAPANIAIHGIR 162

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P          +E      +  S      +  +N +FD                      
Sbjct: 163 PNDVKTA-QPFSEC---FAEMLSFVGKLPLAAHNAQFDMTAFFRAAQ------------- 205

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                   +++    AF        + + G  + KL  +A    ++  N H+
Sbjct: 206 ------AENLVLPTVAFGCSLALSRAANLGTPNHKLPTVAKHLNVDLTNHHN 251


>gi|262384204|ref|ZP_06077340.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301311117|ref|ZP_07217046.1| exonuclease [Bacteroides sp. 20_3]
 gi|262295102|gb|EEY83034.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300831180|gb|EFK61821.1| exonuclease [Bacteroides sp. 20_3]
          Length = 181

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 56/205 (27%), Gaps = 28/205 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +             ++  W  ++S      +P  ++        I 
Sbjct: 1   MERFAAIDFET--ANGKRSSICSIGIAILEDDW-VVDSIYTL-VRPTPNF-YTRWTTAIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +      +   E    I           +  +N  FD+   +              
Sbjct: 56  GLTAEDTNDA-LCFEEAWESIAPKLKD---LPLVAHNSPFDEGCLKAA------------ 99

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   ++ D+    Y F               + +LQ +A   G +    H+A AD 
Sbjct: 100 -------HEVYDLAYPKYPFYCTCRLSRKMYPFLVNHQLQTVAAHCGYDLTRHHNAMADA 152

Query: 182 YATLALVWLIREKKPKLFEYLYDYR 206
           YA   +   +  +K           
Sbjct: 153 YACAHIALTMMREKEVDTLEALMAS 177


>gi|16082354|ref|NP_394831.1| hypothetical protein Ta1376 [Thermoplasma acidophilum DSM 1728]
 gi|10640719|emb|CAC12497.1| hypothetical protein [Thermoplasma acidophilum]
          Length = 188

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 11/112 (9%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFITG 62
           +  D ET G D           V         E     F    +P  D + D  A+ + G
Sbjct: 2   IFIDTETTGLDPTKCSVISVGAVVY-------EDPSSRFYMEARPDPDAMIDDGALAVNG 54

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRN 113
            T +          +      ++++  ++   +   NI FD  +       N
Sbjct: 55  FTKEYLSSIANAMYDMLTTFTEWYASNSSDYTVAGYNIDFDISFLSQECLMN 106


>gi|283954255|ref|ZP_06371779.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794273|gb|EFC33018.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 253

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  V+     +   V++ +  ++I   + F                +TGIT
Sbjct: 72  FSIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSFI----KVKEIPENITELTGIT 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            +      +     ++ +  F       I   +N+RFD  +         +
Sbjct: 126 YEMVENAPI----LAKVLSDFRLFLKDSIFVAHNVRFDYSFISKALNECGF 172


>gi|258512426|ref|YP_003185860.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479152|gb|ACV59471.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 218

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 23/193 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G   A D+    A         + + +     +  D          +TG+T
Sbjct: 30  YFVLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAIVRHDDVADVPSHIWELTGLT 89

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+ A+RDG    E +  + +   +    +   +++R D  + +                +
Sbjct: 90  PE-AMRDGEPL-EVA--LRRALELGAGRVWVAHHVRHDLGFLQRA-------------TD 132

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R  L  +       +    +       A    L +     GI  V  H A ADV  T
Sbjct: 133 ALWRLRLRPLAMDTAVVAQVLAR------AARPLTLDEACEWLGIPVVGRHRADADVRMT 186

Query: 185 LALVWLIREKKPK 197
            A+     E   +
Sbjct: 187 AAVWRKEMELCGR 199


>gi|33151672|ref|NP_873025.1| oligoribonuclease [Haemophilus ducreyi 35000HP]
 gi|38372407|sp|Q7VNN8|ORN_HAEDU RecName: Full=Oligoribonuclease
 gi|33147893|gb|AAP95414.1| oligoribonuclease [Haemophilus ducreyi 35000HP]
          Length = 183

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 15/130 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            H +  D E  G D   DR  + A +  D+    +                K  +  +  
Sbjct: 7   QHLIWIDLEMTGLDPNQDRIIEIATIVTDKDLNILAKGPVLAVHQPNTLLSKMNEWCIKT 66

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A    G+  ++  +  + E     +   F        +  I  N++  D  +      
Sbjct: 67  HTA---NGL-IERVKQSKLTERAAELQTLDFLKQWVMKGSSPICGNSVAQDKRFLYQYMP 122

Query: 112 RNFYDSYRWS 121
                 +   
Sbjct: 123 DLADYFHYRH 132


>gi|289550389|ref|YP_003471293.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01]
 gi|315660145|ref|ZP_07913002.1| exonuclease [Staphylococcus lugdunensis M23590]
 gi|289179921|gb|ADC87166.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01]
 gi|315494826|gb|EFU83164.1| exonuclease [Staphylococcus lugdunensis M23590]
          Length = 186

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 54/195 (27%), Gaps = 30/195 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N FV  D+ET   +           V+V    +  ES                + + + G
Sbjct: 6   NAFVALDFET--ANGKRTSICSVGMVKVIDN-QITESFHTL---INPQDYFSKKNINVHG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I P+  +     +      + QF +      +  +N  FD         +    +   ++
Sbjct: 60  INPEDVIHAPQFDY-VFPYMLQFIAN---LPVVAHNAAFDMNVLHQSLKQAGIITPDLTY 115

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                                   Q   R   A  + L+ +     ++    HDA  D  
Sbjct: 116 --------------------FCSYQLAKRTIDAPRYGLKHMMDFYNLDFHGHHDALNDAK 155

Query: 183 ATLALVWLIREKKPK 197
           A   + + + +    
Sbjct: 156 ACAMITFRLLQHYDD 170


>gi|260550748|ref|ZP_05824956.1| ribonuclease HI [Acinetobacter sp. RUH2624]
 gi|260406254|gb|EEW99738.1| ribonuclease HI [Acinetobacter sp. RUH2624]
          Length = 459

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  E+  I GI+
Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPEK---PVGESENIHGIS 289

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
                   V  A+ +  + ++        I  +N  FD  +    F R    
Sbjct: 290 DDFLKDKPV-YADIADTLFEYLKGAE---IIAHNATFDMNFLDMEFRRVGLP 337


>gi|298376895|ref|ZP_06986849.1| exonuclease [Bacteroides sp. 3_1_19]
 gi|298265879|gb|EFI07538.1| exonuclease [Bacteroides sp. 3_1_19]
          Length = 181

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 28/205 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +             ++  W  ++S      +P  ++        I 
Sbjct: 1   MERFAAIDFET--ANGKRSSICSIGIAILEDDW-VVDSIYTL-VRPTPNF-YTRWTTAIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ +      +   E    I           +  +N  FD+   +              
Sbjct: 56  GLSVEDTNDA-LCFEEAWESIAPKLKD---LPLVAHNSPFDEGCLKAA------------ 99

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   ++ D+    Y F               + +LQ +A   G +    H+A AD 
Sbjct: 100 -------HEVYDLAYPKYPFYCTCRLSRKMYPFLVNHQLQTVAAHCGYDLTQHHNAMADA 152

Query: 182 YATLALVWLIREKKPKLFEYLYDYR 206
           YA   +   +  +K           
Sbjct: 153 YACAHIALTMMREKEVDTLEALMAS 177


>gi|255013952|ref|ZP_05286078.1| hypothetical protein B2_08587 [Bacteroides sp. 2_1_7]
          Length = 192

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 70/199 (35%), Gaps = 26/199 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             + +D ET G     +   Q +G + +D      + +  F   P      + EA+ I  
Sbjct: 2   KLLFFDLETTGIKYWRNGVHQISGEIVIDG---VTKESFNFNVCPHSQCEIEEEALRICN 58

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVP--------NTCIIGYNNIRFDDYYSRNIFYRNF 114
           ++ ++         E   +     S             ++GYNN  FD+++ +       
Sbjct: 59  VSKEQIQAYP-PMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLK------- 110

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                +   NG+  +     + +I            +    T FK + +A A GI+  +A
Sbjct: 111 ----AFFVQNGDHYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSA 166

Query: 175 --HDAKADVYATLALVWLI 191
             HDA  D+  T  +   I
Sbjct: 167 KLHDASYDIQLTKEIYNRI 185


>gi|261419662|ref|YP_003253344.1| hypothetical protein GYMC61_2250 [Geobacillus sp. Y412MC61]
 gi|319766479|ref|YP_004131980.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC52]
 gi|261376119|gb|ACX78862.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC61]
 gi|317111345|gb|ADU93837.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp.
           Y412MC52]
          Length = 242

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 55/201 (27%), Gaps = 30/201 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           FVI D ET G      D     A  +        ++          +         +TGI
Sbjct: 62  FVIIDMETTGFSPEQGDEILAMAAAKT-VGGVVTDAYMTL---VKPEKPIPEHISALTGI 117

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  +      AE  R    F +     +IGY+    D  + R+  +R+    YR  W 
Sbjct: 118 EAKDVVFAP-PLAEALRTFVPFIAA--GVLIGYHIGH-DLAFLRHALWRH----YRQKWS 169

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +  +                          D     GI     H A  DV A
Sbjct: 170 GRFVDLQPMMTLIGHSC-----------------PTFDDALACYGIRCPRRHTADGDVEA 212

Query: 184 TLALVWLIREKKPKLFEYLYD 204
              L  ++ ++  +       
Sbjct: 213 MAKLWAILLDEFRQRGIDTLH 233


>gi|94499932|ref|ZP_01306467.1| exonuclease [Oceanobacter sp. RED65]
 gi|94427790|gb|EAT12765.1| exonuclease [Oceanobacter sp. RED65]
          Length = 224

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 53/190 (27%), Gaps = 20/190 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +++ D ET G     +       V ++    K+ S    + K  +      ++  I  I 
Sbjct: 43  YLVIDTETTGLSPKDNTLLSIGWVAIESGKVKLNSARHRYIKVKEGV---GQSATIHQIR 99

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +    GV   +    +          ++ +++   D  +            Y     N
Sbjct: 100 DCELQD-GVTINQAMAEVLTAMKDS---VLVFHHAPMDMAFLNK---------YCRQLYN 146

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 L+D +               +      F+L       G+     H+A  D  AT
Sbjct: 147 APLLMPLVDTL----NIEKSRHMHNDQARKNGFFRLAHCRQRYGLSAHQGHNALTDAIAT 202

Query: 185 LALVWLIREK 194
             L+      
Sbjct: 203 AELLLAQVAH 212


>gi|113460646|ref|YP_718712.1| ribonuclease T [Haemophilus somnus 129PT]
 gi|123327179|sp|Q0I251|RNT_HAES1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|112822689|gb|ABI24778.1| RNAse T [Haemophilus somnus 129PT]
          Length = 218

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 57/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D     + +    F  +P +    +PE++   G
Sbjct: 24  VIIDVETAGFNAQTDALLELAAITLKMDENGLLVPDEKCHFHIQPFEGANINPESLKFNG 83

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  + E      + +        +     +I  +N  FD  +      R    
Sbjct: 84  IDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFDQSFVMAAAERTKIK 143

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    + + D            +          SF           +   AH 
Sbjct: 144 ------RNPFHPFSIFDTATLSGFMFGQTVLVKGCQVANISF-----------DGKKAHS 186

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 187 ALYDAERTAELFCYMVNH 204


>gi|190573537|ref|YP_001971382.1| ribonuclease T [Stenotrophomonas maltophilia K279a]
 gi|190011459|emb|CAQ45077.1| putative ribonuclease T [Stenotrophomonas maltophilia K279a]
          Length = 216

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 61/207 (29%), Gaps = 31/207 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYL 52
           M+  F     V+ D ET G D   +   + A V ++     +     T      PA+   
Sbjct: 23  MSQRFRGFLPVVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLE 82

Query: 53  PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            DP+++ +TGI        A  +          +            I+  +N  FD  + 
Sbjct: 83  IDPKSLEVTGIILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFV 142

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R  +    +      S +D + +    Y              G T       A  
Sbjct: 143 NAAVARTGHKRNPFH---PFSVFDTVTLAGIAY--------------GQTVLARAATAAG 185

Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
            G +   AH A  D   T  L   I  
Sbjct: 186 LGWDANEAHSAVYDTEQTARLFCTIAN 212


>gi|30248106|ref|NP_840176.1| oligoribonuclease [Nitrosomonas europaea ATCC 19718]
 gi|37999372|sp|Q82Y15|ORN_NITEU RecName: Full=Oligoribonuclease
 gi|30179991|emb|CAD83986.1| Exonuclease [Nitrosomonas europaea ATCC 19718]
          Length = 181

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
           +N+ +  D E  G +   DR  + A V  D Q   +    V      DD L   D     
Sbjct: 5   SNNLIWIDMEMTGLNPGTDRIIEVALVVTDAQLNTLAEAPVLVVHQPDDILNGMDKWNQS 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    K     + EAE   R+  F  +     T  +  N+I  D  +      +  
Sbjct: 65  THGKSGLIDKVKTSILSEAEVESRMLAFLELHVPAGTSPMCGNSICQDRRFLARSMPKLE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 SYFHYR 130


>gi|229014710|ref|ZP_04171818.1| exonuclease [Bacillus mycoides DSM 2048]
 gi|228746575|gb|EEL96470.1| exonuclease [Bacillus mycoides DSM 2048]
          Length = 181

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 36/135 (26%), Gaps = 11/135 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + FVI D ET G     D+    + +  +   + +                  EA  I G
Sbjct: 23  DQFVILDTETTGL-TLRDQIIDISVI--NLSGKIL-----LNSLVKPTINIPAEAASIHG 74

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +             + + +        ++ YN               N   +   S 
Sbjct: 75  ITNEMVHGAP-SWTAIYKELREV--TVGKTLLIYNAEFDLGMIENTCIANNVEFNNFKST 131

Query: 123 DNGNSRWDLLDVMRA 137
                  D +D  R 
Sbjct: 132 CVMKMYADYVDSKRW 146


>gi|56419989|ref|YP_147307.1| hypothetical protein GK1454 [Geobacillus kaustophilus HTA426]
 gi|56379831|dbj|BAD75739.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 242

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 57/201 (28%), Gaps = 30/201 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           FVI D ET G      D     A  +        ++          +         +TGI
Sbjct: 62  FVIIDMETTGFSPEQGDEILAMAAAKT-VGGVVTDAYMTL---VKPEKPIPEHISALTGI 117

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  +      AE  R    F +     +IGY+    D  + R+  +R+      +   
Sbjct: 118 EAKDVVFAP-PLAEALRTFVPFIAA--GVLIGYHIGH-DLAFLRHALWRH------YRQK 167

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 DL  +M  I    P                  D     GI     H A  DV A
Sbjct: 168 WSGRFLDLQPMMTLIGHSCPT---------------FDDALACYGIRCPRRHTADGDVEA 212

Query: 184 TLALVWLIREKKPKLFEYLYD 204
              L  ++ ++  +       
Sbjct: 213 MAKLWAILLDEFRQRGIETLH 233


>gi|56605730|ref|NP_001008327.1| oligoribonuclease, mitochondrial precursor [Rattus norvegicus]
 gi|81910234|sp|Q5U1X1|ORN_RAT RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
           exonuclease 2 homolog; AltName: Full=Small fragment
           nuclease; Flags: Precursor
 gi|55562847|gb|AAH86420.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Rattus norvegicus]
 gi|149041578|gb|EDL95419.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_c
           [Rattus norvegicus]
          Length = 237

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      V   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|294673890|ref|YP_003574506.1| exonuclease [Prevotella ruminicola 23]
 gi|294473761|gb|ADE83150.1| exonuclease [Prevotella ruminicola 23]
          Length = 163

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 28/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V R  E ++S      +P  +Y  +     + 
Sbjct: 1   MKDFAAIDFET--ANNERTSVCSVGVVIV-RDGEIVDSFYSLI-QPEPNY-YNYWCSQVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T Q       +  E  ++I           +  +N  FD+   + +F     D     
Sbjct: 56  GLTRQDTEEAP-IFPEVWKQIEPMIE---GLPLVAHNKAFDESCLKAVFRCYQMD----- 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                            Y F    +        A + +L  ++   G E  N H A AD 
Sbjct: 107 --------------YPDYQFYCTCVASRKAFPNAANHQLHTISKLCGYELENHHHALADA 152

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 153 EACAWIAREI 162


>gi|255015922|ref|ZP_05288048.1| putative DNA polymerase III epsilon chain [Bacteroides sp. 2_1_7]
          Length = 181

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 28/205 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +             ++  W  ++S      +P  ++        I 
Sbjct: 1   MERFAAIDFET--ANGKRSSICSIGIAILEDDW-VVDSIYTL-VRPTPNF-YTRWTTAIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ +      +   E    I           +  +N  FD+   +              
Sbjct: 56  GLSAEDTNDA-LCFEEAWESIAPKLKD---LPLVAHNSPFDEGCLKAA------------ 99

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   ++ D+    Y F               + +LQ +A   G +    H+A AD 
Sbjct: 100 -------HEVYDLAYPKYPFYCTCRLSRKMYPFLVNHQLQTVAAHCGYDLTQHHNAMADA 152

Query: 182 YATLALVWLIREKKPKLFEYLYDYR 206
           YA   +   +  +K           
Sbjct: 153 YACAHIALTMMREKEVDTLEALMAS 177


>gi|228476288|ref|ZP_04060989.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis
           SK119]
 gi|314936052|ref|ZP_07843401.1| exonuclease [Staphylococcus hominis subsp. hominis C80]
 gi|228269571|gb|EEK11077.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis
           SK119]
 gi|313655869|gb|EFS19612.1| exonuclease [Staphylococcus hominis subsp. hominis C80]
          Length = 185

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 55/208 (26%), Gaps = 31/208 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N F+  D+ET   +           V+V    E +E+                  + + 
Sbjct: 3   KNSFIALDFET--ANKKRTSICSVGMVKVVDN-EIVETFYTL---VNPHDYFSETHIHVH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+          E    + QF +      +  +N  FD                  +
Sbjct: 57  GIHPKDVKDAP-DFKEVFPYMLQFINQ---LPVVAHNAAFDMGVLHQSLKHLNIAVPSLT 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +                        Q   R   A  + L+ L     +     HDA  D 
Sbjct: 113 Y--------------------FCSYQLARRTIKAYRYGLKHLMNHYNLNFHGHHDALNDA 152

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN 209
            A   + + +  K     + +  +  KN
Sbjct: 153 KACAMITYRL-LKHYDSLQSVLQFHGKN 179


>gi|257094710|ref|YP_003168351.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047234|gb|ACV36422.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 469

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 34/140 (24%), Gaps = 19/140 (13%)

Query: 10  YETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKAL 69
            ET G +   DR  +   +  +      +    +                + G       
Sbjct: 11  LETTGANPLRDRITKIGVLEAEG-----DRVSTWSTLVNPQRPIPEFIQQLNGSRDATVA 65

Query: 70  RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRW 129
                 A+ +  +           I ++       + +  F R             + R 
Sbjct: 66  DAP-TFAQVAAELADRL--HGRLFIAHHARFN-YAFVKREFQRLG----------KSFRA 111

Query: 130 DLLDVMRAIYAFSPDGIQWP 149
           D+L  +R      P+  +  
Sbjct: 112 DVLCTVRLSRKLFPEHQKHH 131


>gi|319779077|ref|YP_004129990.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
 gi|317109101|gb|ADU91847.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9]
          Length = 239

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 58/214 (27%), Gaps = 17/214 (7%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G       R  +     +        + +++F     +   D EA+ + GI+
Sbjct: 4   ICLDTETTGLSWKDGHRVIELGCCEIIDGLLTGNNLQIYF---NPEREVDEEALKVHGIS 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +      +  ++ + +I ++        +  +N  FD  +                  N
Sbjct: 61  NEFLSDKPL-FSDKADKIIEYLKDAQ---LVIHNAEFDMGFLNYELSLCGKPKLETFIHN 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D  ++ R       +G              L D +     +    H A  D    
Sbjct: 117 --PVIDTRELAR------ENGFSSAVITLNKLYKDLVDESYKQNTDRE-LHGALLDAVML 167

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
             +   +   + ++F         +         
Sbjct: 168 AKVFIKLNSGQNEIFLETSARSEASDDLGFSSQN 201


>gi|269120725|ref|YP_003308902.1| exonuclease RNase T and DNA polymerase III [Sebaldella termitidis
           ATCC 33386]
 gi|268614603|gb|ACZ08971.1| Exonuclease RNase T and DNA polymerase III [Sebaldella termitidis
           ATCC 33386]
          Length = 195

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 38/207 (18%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-----IESTEVFFCKPADDYLPDP 55
           M+ + V +D ET G           + ++V+   E      +   + F+ +       + 
Sbjct: 1   MSKNIVFFDVETNG--KVGSSVLSISAIKVNFNGEIQKWEKVGEYDRFYFR-NPGEAINM 57

Query: 56  EAVFITGITPQKALRD------GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
            A+ + G+T     +        V   +     + F    +T     +NI+FD       
Sbjct: 58  GAINVNGLTDDVLEKKREGTIYPVHFKDDIESFYSFCQ--DTAHYVAHNIKFD------- 108

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
             R+F      +  +     + +++++A         +WP         KL + A    I
Sbjct: 109 --RSFIPFMLKNQFDTM--LENVEIVKAGINEYYGTYKWP---------KLNECARFYNI 155

Query: 170 EHVNA--HDAKADVYATLALVWLIREK 194
              ++  H++  DV  T  + + + + 
Sbjct: 156 PFDDSSLHESLYDVLITFRVFYKMSKH 182


>gi|49079546|gb|AAT49904.1| PA3232 [synthetic construct]
          Length = 209

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 49/181 (27%), Gaps = 20/181 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET   D           V V R    +      + +P      D E++ I  +    
Sbjct: 35  LDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSL--DAESIRIHKLRRAD 92

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                 +E +  R++  F    +  ++GY         +R+   R   D    +     S
Sbjct: 93  LEGQLQLE-QALRQVLAFI--GDRPLLGYYLSFDVAVLNRH--LRQLLDRQLHNPSIEIS 147

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
                 V R                D     +   LA A  +     H A  D  A   +
Sbjct: 148 SLYHRKVSR-------------HFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALM 194

Query: 188 V 188
            
Sbjct: 195 F 195


>gi|28899597|ref|NP_799202.1| oligoribonuclease [Vibrio parahaemolyticus RIMD 2210633]
 gi|153840401|ref|ZP_01993068.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810]
 gi|260876662|ref|ZP_05889017.1| oligoribonuclease [Vibrio parahaemolyticus AN-5034]
 gi|260902310|ref|ZP_05910705.1| oligoribonuclease [Vibrio parahaemolyticus AQ4037]
 gi|31076785|sp|Q87L01|ORN_VIBPA RecName: Full=Oligoribonuclease
 gi|28807833|dbj|BAC61086.1| oligoribonuclease [Vibrio parahaemolyticus RIMD 2210633]
 gi|149745937|gb|EDM57067.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810]
 gi|308093946|gb|EFO43641.1| oligoribonuclease [Vibrio parahaemolyticus AN-5034]
 gi|308110954|gb|EFO48494.1| oligoribonuclease [Vibrio parahaemolyticus AQ4037]
          Length = 181

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  D     
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +     ++     + E +   +  +F           I  N+I  D  +      
Sbjct: 66  HTASGL----VERVRNSKISEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 122 ELEEYFHYR 130


>gi|330873568|gb|EGH07717.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 206

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 6/86 (6%)

Query: 2  TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
               + D+ET G       R  + A V +  Q   +E  +                  +
Sbjct: 1  MERIAVIDFETTGISPGHSCRATEIA-VVIMEQGRIVELFQSLM---NAGVRIPAFIEGL 56

Query: 61 TGITPQKALRDGVVEAEFSRRIHQFF 86
          TGI+          E      +  F 
Sbjct: 57 TGISNNMIRTAPSAER-VMGDVADFV 81


>gi|300779647|ref|ZP_07089503.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533757|gb|EFK54816.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 238

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 10/113 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D+ET G     D   +   V +D+     ++ E          L       + GI 
Sbjct: 20  YAVIDFETTGMR-DNDAIVEIGVVLLDKDLSVEDTWEAL---VNPHRLI--LNTDVHGIE 73

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                  G+     +          +   +  ++  ++  Y R  F R   D 
Sbjct: 74  EDDV-DRGLTFPALAGYFKHLL---HGRTLVAHDATYEKRYLRYEFERWGMDD 122


>gi|257454146|ref|ZP_05619419.1| DNA polymerase III subunit epsilon [Enhydrobacter aerosaccus SK60]
 gi|257448474|gb|EEV23444.1| DNA polymerase III subunit epsilon [Enhydrobacter aerosaccus SK60]
          Length = 215

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 53/188 (28%), Gaps = 19/188 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDR--QWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            D E  G +   D       V+V +      I++            +P  + + I G+ P
Sbjct: 44  LDLEMTGLNAKQDYILSVGAVQVRKESNGFVIDTDSALSLVCRPPVMPTHDTIVIHGLRP 103

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                +G+   E   ++       N  IIG+                 F ++    +   
Sbjct: 104 IDV-DNGLSYDEMLTQLLPMLK--NRPIIGF----------CVDMDMAFLNAIAKPFLGV 150

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                L+DV R                       L  L     I  + AH+A  D   T 
Sbjct: 151 ELANKLVDVSR----LYQQNQHRHDPSQVGQLPHLNQLLEEYQIPRLPAHNALNDAIMTA 206

Query: 186 ALVWLIRE 193
            L   + +
Sbjct: 207 MLFTHLMQ 214


>gi|255100360|ref|ZP_05329337.1| putative exonuclease [Clostridium difficile QCD-63q42]
          Length = 258

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 62/229 (27%), Gaps = 38/229 (16%)

Query: 5   FVIYDYETFGRDVALD--------------RPAQFAGVRVDRQWEKIESTEVFFCKPADD 50
           ++I+D E    +   D                 Q   +++D ++  I++    + KP   
Sbjct: 3   YIIFDLE---FNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNS-YVKPTIY 58

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
               P    +T I             E      +F S  +  +  +              
Sbjct: 59  KDIHPFISRMTNIKNSDFNDSP-TFPEVYNNFIKFISSQDPILCVWGAGDL------KEL 111

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
           YRN       S     S  ++                    +    S  LQ+      ++
Sbjct: 112 YRNINYHKLPSNSLPKSYINI-----------QQHASKYFNNPAGKSIGLQNAISILELD 160

Query: 171 HVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
              + H+A  D Y T  +   I      + +       K +  +  + +
Sbjct: 161 EKMSYHNALNDAYYTAKVFIKIYNP-SIVPDIYLYTSIKPKTIRYSNKK 208


>gi|167842269|ref|ZP_02468953.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
           thailandensis MSMB43]
          Length = 292

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 47/182 (25%), Gaps = 33/182 (18%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       + A +  DR    +                  +A  I GIT 
Sbjct: 130 LFIDTETTGLD-FQAEIVEIAIL--DRAGALL-----LDTLVKPAMPIPADATAIHGITD 181

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                     A    ++ +  +     +   ++  FD+        R+       ++  G
Sbjct: 182 AHVAGAPG-WASVGPQVAELLA---GRLWIAHHAAFDERLLLQTSRRHAVKVP--TFRLG 235

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            +   L D                          L D A   G      H A+AD     
Sbjct: 236 CTIELLGDWA-------------------GRRLSLADAATMLGAAPTTRHRARADAEQCR 276

Query: 186 AL 187
            +
Sbjct: 277 QI 278


>gi|157364228|ref|YP_001470995.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO]
 gi|157314832|gb|ABV33931.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO]
          Length = 188

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 48/191 (25%), Gaps = 29/191 (15%)

Query: 5   FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F   D ET G D    DR  + A V V  +   +    ++                I  I
Sbjct: 8   FCAMDTETTGIDPMNGDRIVEVAIVPV-YKGRILYR-SIYHTLVNPKIRIPATIEKIHRI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       +E +   ++  F       I+ ++   FD  +                  
Sbjct: 66  TNEDIENAPTIE-QVFGQMRSFMRRS---IMIFHRAEFDLTFIDISAKEIGIFP------ 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D +D          +                  LA   G E    H A  D   
Sbjct: 116 ---PSIDYIDTREISEIIFGEKKALSW------------LAERFGFE-KPNHRALTDAIT 159

Query: 184 TLALVWLIREK 194
           T  L   +  K
Sbjct: 160 TAKLFLKMTRK 170


>gi|156972480|ref|YP_001443387.1| oligoribonuclease [Vibrio harveyi ATCC BAA-1116]
 gi|166216591|sp|A7MZ48|ORN_VIBHB RecName: Full=Oligoribonuclease
 gi|156524074|gb|ABU69160.1| hypothetical protein VIBHAR_00112 [Vibrio harveyi ATCC BAA-1116]
          Length = 181

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
            + +  D E  G D    +  + A +  D +   +     +   +P ++ +   +    T
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELVKMDDWCTNT 65

Query: 62  GIT---PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
             +    ++     V E +   +  +F           I  N+I  D  +          
Sbjct: 66  HTSSGLVERVRNSDVSEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMPELEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|323143472|ref|ZP_08078155.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei
           YIT 12066]
 gi|322416757|gb|EFY07408.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei
           YIT 12066]
          Length = 321

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 61/212 (28%), Gaps = 45/212 (21%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQW---------EKIESTEVFFCKPADDYLPDPE 56
           V  D ET G D   ++  +   VRV   +            +  E              E
Sbjct: 79  VFLDTETTGMDCNQEKIIELGMVRVTYSFDRKLMLSIDRIYDEFE------DPGKKIPLE 132

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +T IT +        + +   +I          ++  +N +FD  +           
Sbjct: 133 IQQLTHITDEMVAGH-RFDNDSVSQILA-----GRPLVVAHNAKFDRPFFDR-------- 178

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                            +    +A S  G+ W +  D     KL+ L    G    +AH 
Sbjct: 179 -------------RFPTLSDLSWACSLSGVNWDALGDNGR--KLEFLCQVRGW-FYDAHR 222

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNK 208
           A  D  A L L+ +  E    L      +  K
Sbjct: 223 AYDDCLALLWLMHIEPEAFEMLINSALRHEYK 254


>gi|127512449|ref|YP_001093646.1| ribonuclease T [Shewanella loihica PV-4]
 gi|126637744|gb|ABO23387.1| RNAse T [Shewanella loihica PV-4]
          Length = 257

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 62/200 (31%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D   +  ++ T  +  +P +    +PEA+   G
Sbjct: 40  VVIDVETAGFNAQTDALLEIAVTLLKMDDNGDLVLDKTLHYHIEPFEGANLEPEALAFNG 99

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  II  +N  FD  +      RN   
Sbjct: 100 IDPSNPLRGAVSEKEAFLEIFKEVKKHQKASNCHRSIIVAHNAAFDHGFVTQAIERNALK 159

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
                       +   D            +             L       GI   N  A
Sbjct: 160 ------RTPFHPFATFDTAALSGLALGHTV-------------LAKACEIAGIPFDNKEA 200

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  K
Sbjct: 201 HSALYDTERTAELFCHIVNK 220


>gi|304383875|ref|ZP_07366332.1| exonuclease [Prevotella marshii DSM 16973]
 gi|304334953|gb|EFM01226.1| exonuclease [Prevotella marshii DSM 16973]
          Length = 163

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 28/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V R     ++      +P  +Y      V + 
Sbjct: 1   MKDFAAIDFET--ANNERSSVCSVGLVIV-RNGAVADTFYSLI-QPEPNY-YSYWCVRVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T        V  +E  ++I           +  +N RFD+   R +F     D   +S
Sbjct: 56  GLTHADTDAAPV-FSEVWKQIEPLIE---GLPLVAHNSRFDESCLRAVFRVYQMDYPDYS 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      +D L   R                   ++ +L  +A   G +  N H A AD 
Sbjct: 112 F------FDTLTAAR-------------RTFPHLSNHQLHTVATECGYDLKNHHHALADA 152

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 153 EACAWIARKI 162


>gi|300310766|ref|YP_003774858.1| oligoribonuclease [Herbaspirillum seropedicae SmR1]
 gi|300073551|gb|ADJ62950.1| oligoribonuclease (3'->5' exoribonuclease) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 189

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
           + +  D E  G D   DR  + A V  D +   +    V     +D+ L   +A      
Sbjct: 15  NLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSDELLDGMDAWNKGTH 74

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +    +     V EA+  ++I +F           +  N+I  D  +      +    
Sbjct: 75  GRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQDRRFMVRGMPKLEEF 134

Query: 117 SYRW 120
            +  
Sbjct: 135 FHYR 138


>gi|323486817|ref|ZP_08092135.1| exonuclease [Clostridium symbiosum WAL-14163]
 gi|323694961|ref|ZP_08109111.1| hypothetical protein HMPREF9475_03975 [Clostridium symbiosum
           WAL-14673]
 gi|323399830|gb|EGA92210.1| exonuclease [Clostridium symbiosum WAL-14163]
 gi|323501051|gb|EGB16963.1| hypothetical protein HMPREF9475_03975 [Clostridium symbiosum
           WAL-14673]
          Length = 335

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 29/238 (12%)

Query: 2   TNHFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
              +++ D E      G+D ++DR      +   V+++   + I        +P      
Sbjct: 1   MGQYIVLDLEWNQSPLGKDGSMDRLPFEIIEIGAVKLNASLQIISEF-RRLIRPRVYRQM 59

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
             +   +T ++  +   +G    EF + + +F +              D    +     +
Sbjct: 60  HFKISEVTHMSMDELNMEGE---EFGKAMEEFLAWCGDDYKFCTWGSMDLTELQRNMVYH 116

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D              +  ++R                       L  +    GI    
Sbjct: 117 GLDIPFRMPLLYYDLQKIYGLIRGDKQKD----------------SLDTVVEELGIAEDR 160

Query: 174 A-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
             H A  D Y T  ++  +       +  +  YR        I ++       VS M+
Sbjct: 161 PFHRALDDAYYTGRIMAEMDFYSMVEYVSVDYYRPPETEEDEIYLEFPGYAKFVSRMY 218


>gi|257454857|ref|ZP_05620108.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Enhydrobacter aerosaccus SK60]
 gi|257447790|gb|EEV22782.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Enhydrobacter aerosaccus SK60]
          Length = 595

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 8/155 (5%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G +    DR  +   V +                         E + + GI 
Sbjct: 368 LILDTETTGFEAQNGDRIIEVGIVEM-INRRFTGE--KLHVYINPKIEMGEEVIRVHGIH 424

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V E +    I+ F        +  +N  FD  + +  F R        +   
Sbjct: 425 NAFLNDMPVFE-QVGEAIYDFLQGAE---LIAHNAGFDMSFLQAEFARLGLPDINQTVTV 480

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
            +S      +           ++  +      +F 
Sbjct: 481 TDSLAIAKRMFAGQRNTLDALVKRLNVGKQDRTFH 515


>gi|213418624|ref|ZP_03351690.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 158

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 48/170 (28%), Gaps = 19/170 (11%)

Query: 23  AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82
            +   +  D          +             EA+ I GIT +          +    +
Sbjct: 1   VEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHGITNEMVAFAPA-WTDICGAV 52

Query: 83  HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
            + F       + YN   FD    R  +  N   S    W         +          
Sbjct: 53  EELFRRFG--FVIYNA-DFDLRLIRQTYALNERPSEGAPWMLAAHSVCAM-------KLY 102

Query: 143 PDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYATLALVWLI 191
            +    P R +G    KL D A   G +    AH A AD   TL LV  +
Sbjct: 103 AEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKAHRALADCKMTLGLVRAL 152


>gi|241894744|ref|ZP_04782040.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
           ATCC 33313]
 gi|241871956|gb|EER75707.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
           ATCC 33313]
          Length = 177

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET                 V    + ++           D   D     I GI
Sbjct: 2   NFIAMDFET--ASAKRYSAVSLGLAVVRDN-KLVDEFYTL---IKPDSFFDKRNTRIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T         +  E   +I QF       ++  +N  FD+   R        D       
Sbjct: 56  TEADVRNAP-IFPEVWEQIQQF--YTPNQLVIAHNAPFDNGVLRETLTHYDIDL------ 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  LD +R      P+            + KL  +A A GI+  + H+A  D  A
Sbjct: 107 ---PHYLSLDTVRTSRKLYPEL----------PNHKLNTVAAALGIDLKHHHNALNDTVA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 AAEIL 158


>gi|224537614|ref|ZP_03678153.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520756|gb|EEF89861.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 164

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 55/190 (28%), Gaps = 28/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V    E +++      +P  +Y        + 
Sbjct: 1   MENFAAIDFET--ANEQRTSVCSVGIVIVRE-GEIVDTYYSLI-RPEPEY-YTYWNTRVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T     +   +     + I           +  +N  FD+         +   +   +
Sbjct: 56  GLTLADTAKAP-IFPTVWQEIAPLIE---GLPLIAHNKGFDE---------SCLKAVFRT 102

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      ++    +               R  G  +++L  +A   G E    H A AD 
Sbjct: 103 YSLDYPDYEFHCTLSTAR----------RRIKGLPNYQLHTVAAYFGYELEQHHHALADA 152

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 153 EACAWIAREI 162


>gi|307128611|ref|YP_003880641.1| DNA polymerase III subunit alpha [Candidatus Sulcia muelleri CARI]
 gi|306483073|gb|ADM89943.1| DNA polymerase III, alpha subunit [Candidatus Sulcia muelleri CARI]
          Length = 1379

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 25/197 (12%)

Query: 5   FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++I+D ET G     + P           + +    D +++ I   + +  KP    +P 
Sbjct: 2   YIIFDTETTGLPKDYNAPINNIINWPRLVKISWGLYDEKFKLI-ELKDYIIKPECYEIPF 60

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             +  I GI+ + A+  G       ++ ++  +  N      +N+ FD       F+R  
Sbjct: 61  L-STKIHGISTKYAIEKGYKINYVLKKFNKIINKYN--FFIGHNVFFDIKIICAEFFRIK 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
              + +     ++              S +        D      L +L      +   A
Sbjct: 118 KKIFLYKKKIIDT-----------KEKSINYCAIKIGKDKLKWPTLTELYKKLFNDTFIA 166

Query: 175 HDAKADVYATLALVWLI 191
           HD+K+DV AT    + +
Sbjct: 167 HDSKSDVLATSKCFFEL 183


>gi|217970407|ref|YP_002355641.1| oligoribonuclease [Thauera sp. MZ1T]
 gi|217507734|gb|ACK54745.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
          Length = 182

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
               +  D E  G +   DR  + A V  D   E I    V      D  L   D     
Sbjct: 5   PKTLIWLDMEMTGLEPDRDRIIEIAIVLTDEALEVIAEAPVIAVHQPDSVLDGMDEWNRN 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +     + EA+   ++  F        T  +  N++  D  +         
Sbjct: 65  THGKSGLTARVRASTMSEADAEAQVLAFLRAHVPARTSPMCGNSVCQDRRFLARWMPELE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 AWFHYR 130


>gi|262198353|ref|YP_003269562.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262081700|gb|ACY17669.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 187

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 15/130 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
            N  +  D E  G D   +R  + A +  D   E +           E    +  D    
Sbjct: 4   KNPLIWMDLEMTGLDPERERIIEIAVLITDNALEIVAEGPDLVVHQPESLLEQMDDWNRK 63

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
              A  +T    ++     V EAE   ++  F           +  N+I  D  + R   
Sbjct: 64  HHGASGLT----ERVRASQVSEAEAEAQVLAFLREHVKQGAAPLAGNSIHQDRRFLRRYM 119

Query: 111 YRNFYDSYRW 120
            +     +  
Sbjct: 120 PQIDDYLHYR 129


>gi|157961523|ref|YP_001501557.1| exonuclease RNase T and DNA polymerase III [Shewanella pealeana
           ATCC 700345]
 gi|157846523|gb|ABV87022.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana
           ATCC 700345]
          Length = 228

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 49/177 (27%), Gaps = 20/177 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D E  G +   D+      + +     ++  ++              ++  I GI   +
Sbjct: 48  VDLEMTGLNSQFDQILSIGLIPIRNGLLQVSHSKHLLVSIDGSV---GDSAVIHGIVDNQ 104

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
             +    +   +     F       ++  ++   D  + +    R       +       
Sbjct: 105 LTQAVSPKLAMAW----FLEQTQGHVLVAHHAPLDLCFLKAEIQRC------YGQTIQFV 154

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             D + V +       D I+         S +L       G+    AH+A  D  A 
Sbjct: 155 AIDTMAVEKRRLLMQIDVIK-------EGSLRLDACRQRYGLPVYAAHNAAIDALAC 204


>gi|32490818|ref|NP_871072.1| hypothetical protein WGLp069 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166024|dbj|BAC24215.1| dnaQ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 246

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 57/200 (28%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G +         R  +   + +            F      D L + EA  I
Sbjct: 9   IVLDTETTGMNKNGPHYYGHRIIEIGAIEM-INRRLTGR--CFHTYLKPDRLVEIEAFKI 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +        E E   +   F       I   +N  FD  +  N       +    
Sbjct: 66  HGISDEFLFFQPTFE-EIMEKFINFIKGSELII---HNSVFDIGFINNEIQLCNKNLNNI 121

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           ++    S  D L + R I+                    L  L+   GI+      H A 
Sbjct: 122 NYY--CSVIDTLKLARNIFPG--------------KRNNLDALSDRYGIDTTKRILHGAL 165

Query: 179 ADVYATLALVWLIREKKPKL 198
            D      +  L+   +  +
Sbjct: 166 LDAEILSNVYLLMTGGQIPI 185


>gi|152981086|ref|YP_001352542.1| oligoribonuclease [Janthinobacterium sp. Marseille]
 gi|151281163|gb|ABR89573.1| oligoribonuclease protein [Janthinobacterium sp. Marseille]
          Length = 195

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
           + V  D E  G D   DR  + A V  D     +    VF    +D+ L   +A      
Sbjct: 21  NLVWVDMEMTGLDPDKDRIIEVAVVVTDANLNILGEGPVFAIHQSDEVLDGMDAWNKGTH 80

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +    +     V EAE    + +F           +  N I  D  +      +    
Sbjct: 81  GRSGLIDRIKASTVTEAEAETALIEFLKKYVPSGKSPMCGNTICQDRRFMVRGMPKLEAF 140

Query: 117 SYRW 120
            +  
Sbjct: 141 FHYR 144


>gi|325983345|ref|YP_004295747.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
 gi|325532864|gb|ADZ27585.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
          Length = 245

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 29/196 (14%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D ET G +  L  R  + A V   +RQ+    S   ++     +   D  A+ + G+
Sbjct: 4   IVLDTETTGLECKLGHRIVEIAAVELCNRQF--TGSHFHYY--LNPERESDEGALQVHGL 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          E SR    F S     I   +N  FD  +  +               
Sbjct: 60  TMEFLQDKAK-FYEISREFLNFISDAELII---HNAPFDVGFLNHELG------------ 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADV 181
                   L  +    +   D ++            L  L     I++     H A  D 
Sbjct: 104 -----LCNLKALDNYCSQITDTLKLAKELHPGKRNNLDALCERYNIDNSKRKLHGALLDA 158

Query: 182 YATLALVWLIREKKPK 197
                +   +   +  
Sbjct: 159 ELLAEVYLAMTRGQES 174


>gi|291231281|ref|XP_002735595.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 217

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 53/207 (25%), Gaps = 20/207 (9%)

Query: 5   FVIYDYETFGRDVA----------LDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
           ++ +D E    D                     V +D    E+    +  +C+P      
Sbjct: 7   YLCFDLEATCVDPKCPANQVTEGFQPEIIDIGAVILDSNTLEEKGEFQS-YCRPVKHPTL 65

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            P  + +T I+ +          +   R   +                          + 
Sbjct: 66  QPFCLELTKISQETVDAADE-FPDVWGRFIDWMKSKGLKPGAETPNFQLVTDGPFDCGKY 124

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHV 172
            +  +  +       W         +       +   R  G    KL D+    G +   
Sbjct: 125 LFIQFNNTSKLSFPHW------ARNFVELKTEYKSYKRLVGRRWPKLSDMLAGLGLLRSG 178

Query: 173 NAHDAKADVYATLALVWLIREKKPKLF 199
           + H A AD ++   +   +  ++   +
Sbjct: 179 SNHRALADAHSVADVTKTVLRRRGDKY 205


>gi|258652005|ref|YP_003201161.1| exonuclease RNase T and DNA polymerase III [Nakamurella
           multipartita DSM 44233]
 gi|258555230|gb|ACV78172.1| Exonuclease RNase T and DNA polymerase III [Nakamurella
           multipartita DSM 44233]
          Length = 212

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 45/159 (28%), Gaps = 28/159 (17%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AV 58
           M +  V  D E  G D+  D+  + A +  D     +            D +   +  A+
Sbjct: 1   MNDRLVWVDCEMTGLDLGTDKLIEIAALVTDSDLNILGEGV--------DVVIHADDAAL 52

Query: 59  F-----IT------GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDD 103
                 +T      G+T  +     V  A+        I +F   P +  +  N+I  D 
Sbjct: 53  AAMPQVVTEMHAKSGLTD-RVRESTVTMAQAEQLVLDYIREFVPEPKSAPLAGNSIATDR 111

Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
            +          D Y        S    L        + 
Sbjct: 112 GFI--ARDMPLLDDYLHYRMVDVSSIKELCRRWYPRIYF 148


>gi|153000260|ref|YP_001365941.1| ribonuclease T [Shewanella baltica OS185]
 gi|304409837|ref|ZP_07391457.1| ribonuclease T [Shewanella baltica OS183]
 gi|307304193|ref|ZP_07583946.1| ribonuclease T [Shewanella baltica BA175]
 gi|166200019|sp|A6WM39|RNT_SHEB8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|151364878|gb|ABS07878.1| ribonuclease T [Shewanella baltica OS185]
 gi|304352355|gb|EFM16753.1| ribonuclease T [Shewanella baltica OS183]
 gi|306913091|gb|EFN43514.1| ribonuclease T [Shewanella baltica BA175]
          Length = 223

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D +    I+ T  F  +P +    +PEA+   G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +        S  +  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
               S  +  + +D   +       +                 L    +  GI   N  A
Sbjct: 140 ---RSPFHPFATFDTATLAGLAIGHTV----------------LAKACIMAGIPFDNKEA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAELFCHIVNR 200


>gi|139473144|ref|YP_001127859.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes str.
           Manfredo]
 gi|134271390|emb|CAM29610.1| putative exonuclease [Streptococcus pyogenes str. Manfredo]
          Length = 208

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 18  DTYIAFDLE---FNTVNDVSHIIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 71  TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167

Query: 181 VYATLALVWLIREKKPK 197
              T A+     E    
Sbjct: 168 ARMTAAIYKSFLETDTN 184


>gi|111018425|ref|YP_701397.1| oligoribonuclease [Rhodococcus jostii RHA1]
 gi|123340872|sp|Q0SGU7|ORN_RHOSR RecName: Full=Oligoribonuclease
 gi|110817955|gb|ABG93239.1| oligoribonuclease [Rhodococcus jostii RHA1]
          Length = 199

 Score = 63.7 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 56/204 (27%), Gaps = 36/204 (17%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M +  V  D E  G  +  D+  + A +  D +   +           DD L        
Sbjct: 1   MQDKLVWIDCEMTGLRLGTDKLIEIAALVTDSELNVLGEGVDIVIHADDDALAAMPDVVT 60

Query: 59  FIT---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFY 111
            +    G+T +   +  V  AE  +++  +         T  +  N+I  D  +      
Sbjct: 61  KMHENSGLTDE-VRKSTVTLAEAEQQVLAYIREHVPVAGTAPLAGNSIATDRGFI--ARD 117

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
               D+Y        S    L        +                            E 
Sbjct: 118 MPDLDTYLHYRMIDVSSIKELSRRWYPRIYFG------------------------QPEK 153

Query: 172 VNAHDAKADVYATLALVWLIREKK 195
             AH A AD+  ++  +   R+  
Sbjct: 154 GLAHRALADIRESIRELKYYRKTA 177


>gi|149041576|gb|EDL95417.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_a
           [Rattus norvegicus]
          Length = 254

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      V   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|261496609|ref|ZP_05992989.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307812|gb|EEY09135.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 221

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEV-FFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D     +E  +  F  KP +    +PE++   G
Sbjct: 31  VVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGANINPESLKFNG 90

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ + +   E  + + +          II  +N  FD  + +    R    
Sbjct: 91  IDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAIIVAHNATFDQSFLQAAIKR---- 146

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +  +    + + D            +   +             A     +   AH 
Sbjct: 147 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQ-----------AAQINFDGHQAHS 193

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  K
Sbjct: 194 ALYDTEKTTELFCAMVNK 211


>gi|254456100|ref|ZP_05069529.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083102|gb|EDZ60528.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 220

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 10/110 (9%)

Query: 1   MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    V+ D ET G  V    R  +   + +D     I +   F C    +     +A+ 
Sbjct: 1   MKE--VVLDTETTGISVKEGHRIVEIGCIELD---NLIPTKNRFHCYLNPERKVSEKALE 55

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           + G T +         ++   +   F       I   +N  FD  +  N 
Sbjct: 56  VHGYTDEFLSEQKK-FSDIGEQFLAFIKDKRLII---HNAEFDLGHLNNE 101


>gi|284925719|gb|ADC28071.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 256

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  V+     +   V++ +  ++I   + F  K  +          +TGIT
Sbjct: 72  FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPKNITELTGIT 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+       F       I   +N+RFD  +         +         
Sbjct: 126 YEMVENA-SSLAKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   ++  +                  +  +KL+ L    G+E+ + H A  D  A 
Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220

Query: 185 LALVWLI 191
             +    
Sbjct: 221 AEIFKYC 227


>gi|239638049|ref|ZP_04679008.1| exonuclease [Staphylococcus warneri L37603]
 gi|239596332|gb|EEQ78870.1| exonuclease [Staphylococcus warneri L37603]
          Length = 184

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 56/203 (27%), Gaps = 31/203 (15%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+ + FV  D+ET   +           V+V    +  E+          +     + + 
Sbjct: 1   MSENAFVALDFET--ANGKRTSICSVGMVKVIDN-QITETFHTL---VNPNDYFSEQNIN 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI P+               + QF        +  +N  FD             ++  
Sbjct: 55  VHGIYPEDVASSPNFSY-VFPYMMQFIDQ---LPVVAHNAAFDMNVLHQSIQDIGLETPH 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            ++                        Q   R   +  + L+ +     ++    HDA  
Sbjct: 111 LTY--------------------FCSYQLAKRTVQSHRYGLKHMMDFYQLDFHGHHDALN 150

Query: 180 DVYATLALVWLIREKKPKLFEYL 202
           D  A   + + + +    L   L
Sbjct: 151 DAKACAMITYRLLKHYDDLHSML 173


>gi|160891538|ref|ZP_02072541.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492]
 gi|317478357|ref|ZP_07937521.1| exonuclease [Bacteroides sp. 4_1_36]
 gi|156858945|gb|EDO52376.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492]
 gi|316905516|gb|EFV27306.1| exonuclease [Bacteroides sp. 4_1_36]
          Length = 163

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 54/193 (27%), Gaps = 34/193 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V R  E ++       +P  +Y        + 
Sbjct: 1   MKDFAAIDFET--ANEQRTSVCSVGVVIV-RDGEIVDHYYSLI-RPEPEY-YTYWNTRVH 55

Query: 62  GITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           G+T        +      E + RI           +  +N  FD+   +           
Sbjct: 56  GLTLADTQDAPIFPVVWQEIAPRIE-------GLPLVAHNKAFDESCLKA---------- 98

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                     +    +    Y F            G  +++L  +A+  G +  + H A 
Sbjct: 99  ---------VFRTYCMDYPDYEFYCTLQASRRAIKGLPNYQLHTVAVCCGYQLEHHHHAL 149

Query: 179 ADVYATLALVWLI 191
           AD  A   +   +
Sbjct: 150 ADAEACAWIAKQV 162


>gi|227504454|ref|ZP_03934503.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
 gi|227199102|gb|EEI79150.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
          Length = 214

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 20/195 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGI 63
            +  D ET   D           V +      I+     +           E +V I  +
Sbjct: 27  LLAVDMETTSLDPREGAIVSIGWVPI--NGGVIDLGGADYVLIKGATAGQIEQSVHIHML 84

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T Q  +  GV E E   R+ +         +  +    +  + +    R +         
Sbjct: 85  T-QDVVDAGVAEKEGISRLREALQ---GRALLAHFAALEVGFLKAACKRIY--------- 131

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R D++D              +P  +D     +L  +    G+ +   H+A +D  A
Sbjct: 132 GAAPRLDVVDTFALERRHMERMATYPRGED----LRLARVRQRYGLPNYGNHNALSDAQA 187

Query: 184 TLALVWLIREKKPKL 198
              L   +R     +
Sbjct: 188 CAELFLAMRHDLAGM 202


>gi|313108556|ref|ZP_07794557.1| putative nuclease [Pseudomonas aeruginosa 39016]
 gi|310881059|gb|EFQ39653.1| putative nuclease [Pseudomonas aeruginosa 39016]
          Length = 208

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 49/181 (27%), Gaps = 20/181 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET   D           V V R    +      + +P      D E++ I  +    
Sbjct: 35  LDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSL--DAESIRIHKLRRAD 92

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                 +E +  R++  F       ++GY         +R+   R  +D    +     S
Sbjct: 93  LEGQLQLE-QALRQLLAFIGDRP--LLGYYLSFDVAVLNRH--LRQLFDRQLHNPSIEIS 147

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
                 V R                D     +   LA A  +     H A  D  A   +
Sbjct: 148 SLYHRKVSR-------------HFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALM 194

Query: 188 V 188
            
Sbjct: 195 F 195


>gi|302681013|ref|XP_003030188.1| hypothetical protein SCHCODRAFT_57864 [Schizophyllum commune H4-8]
 gi|300103879|gb|EFI95285.1| hypothetical protein SCHCODRAFT_57864 [Schizophyllum commune H4-8]
          Length = 208

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 8/124 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62
            V  D E  G D   D+  + A +  +   E ++    +  +     L   D       G
Sbjct: 19  IVWVDCEMTGLDHNKDKIIEIAVLITNGNLEIVDEGVEYIIRTDKSVLDGMDEWCTTQHG 78

Query: 63  IT--PQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +      L         E+     I ++     T ++  N++  D  +  N   R    
Sbjct: 79  KSGLTAACLASPHTTSSAESAVLAYIQKWVPTQRTAVLAGNSVHVDRMFLANEMPRLVDW 138

Query: 117 SYRW 120
            +  
Sbjct: 139 LHYR 142


>gi|295094549|emb|CBK83640.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Coprococcus sp. ART55/1]
          Length = 216

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 53/196 (27%), Gaps = 33/196 (16%)

Query: 5   FVIYDYETFGRDVA--------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           +V  D+E    D               +   V++D  + +I+S +  + KPA   +    
Sbjct: 3   YVFVDFEMNMIDSEYKKEKKICKSEIIEIGAVKLDEDYNEIDSFKS-YVKPAYGTMAS-R 60

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNN--IRFDDYYSRNIFYRNF 114
            + +TGIT           A       ++ +  +       N   +         +    
Sbjct: 61  IIKLTGITDDMVEDAP-SYAFAMGSFIEWCADADVIYAWSENDLRQLRKEARLKEYTHPG 119

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +S    W +    +  L                      +    L D     G     A
Sbjct: 120 LESIISRWKDFQKEYAKL-------------------IGTSRRISLSDAVFYLGENFQGA 160

Query: 175 -HDAKADVYATLALVW 189
            HDA  D   T  +  
Sbjct: 161 EHDALWDARNTAEVFK 176


>gi|289706337|ref|ZP_06502695.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus SK58]
 gi|289556832|gb|EFD50165.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus SK58]
          Length = 371

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 51/172 (29%), Gaps = 27/172 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D+ET   +     P     VRV R    ++  E     P      DP  V I GIT
Sbjct: 6   FTAIDFET--ANGFRGSPCAVGAVRV-RDGVMVDRAEWLIRPPVGFDRFDPRNVRIHGIT 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + L      A+    +  F     T ++  +N  FD     +    +  D     +  
Sbjct: 63  EDRVLDAPR-FAQVYDELADFV---GTDVLAAHNAGFDVGVIESGLEVSGRDVPGLEF-- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  L + R +Y                 S+ L   A   G      HD
Sbjct: 117 ----VCTLVLARRVYDL--------------PSYALPSAAREAGFTPGRHHD 150


>gi|226360543|ref|YP_002778321.1| oligoribonuclease [Rhodococcus opacus B4]
 gi|226239028|dbj|BAH49376.1| oligoribonuclease [Rhodococcus opacus B4]
          Length = 199

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 56/204 (27%), Gaps = 36/204 (17%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M +  V  D E  G  +  D+  + A +  D +   +           DD L        
Sbjct: 1   MQDKLVWIDCEMTGLRLGTDKLIEIAALVTDSELNVLGEGVDIVIHADDDALAAMPDVVT 60

Query: 59  FIT---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFY 111
            +    G+T +   +  V  AE  +++  +         T  +  N+I  D  +      
Sbjct: 61  KMHENSGLTDE-VRKSTVTLAEAEQQVLAYIREHVPVAGTAPLAGNSIATDRGFI--ARD 117

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
               D+Y        S    L        +                            E 
Sbjct: 118 MPDLDTYLHYRMIDVSSIKELSRRWYPRIYFG------------------------QPEK 153

Query: 172 VNAHDAKADVYATLALVWLIREKK 195
             AH A AD+  ++  +   R+  
Sbjct: 154 GLAHRALADIKESIRELKYYRKTA 177


>gi|239917363|ref|YP_002956921.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Micrococcus luteus NCTC 2665]
 gi|281414154|ref|ZP_06245896.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Micrococcus luteus NCTC 2665]
 gi|239838570|gb|ACS30367.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Micrococcus luteus NCTC 2665]
          Length = 381

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 51/172 (29%), Gaps = 27/172 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D+ET   +     P     VRV R    ++  E     P      DP  V I GIT
Sbjct: 13  FTAIDFET--ANGFRGSPCAVGAVRV-RDGVMVDRAEWLIRPPVGFDRFDPRNVRIHGIT 69

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             + L      A+    +  F     T ++  +N  FD     +    +  D     +  
Sbjct: 70  EDRVLDAPR-FAQVYDELADFV---GTDVLAAHNAGFDVGVIESGLEVSGRDVPGLEF-- 123

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  L + R +Y                 S+ L   A   G      HD
Sbjct: 124 ----VCTLVLARRVYDL--------------PSYALPSAAREAGFTPGRHHD 157


>gi|160874893|ref|YP_001554209.1| ribonuclease T [Shewanella baltica OS195]
 gi|160860415|gb|ABX48949.1| ribonuclease T [Shewanella baltica OS195]
 gi|315267130|gb|ADT93983.1| ribonuclease T [Shewanella baltica OS678]
          Length = 223

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D +    I+ T  F  +P +    +PEA+   G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +        S  +  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
               S  +  + +D   +       +                 L    +  GI   N  A
Sbjct: 140 ---RSPFHPFATFDTATLAGLAIGHTV----------------LAKACIMAGIPFDNKEA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAELFCHIVNR 200


>gi|297690289|ref|XP_002822552.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 1 [Pongo
           abelii]
 gi|332208258|ref|XP_003253217.1| PREDICTED: oligoribonuclease, mitochondrial-like [Nomascus
           leucogenys]
          Length = 237

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|254516595|ref|ZP_05128654.1| ribonuclease T [gamma proteobacterium NOR5-3]
 gi|219675018|gb|EED31385.1| ribonuclease T [gamma proteobacterium NOR5-3]
          Length = 209

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 60/208 (28%), Gaps = 31/208 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYL 52
           M + F     VI D ET G   + D   + A   +R+D      +  T  F   P +   
Sbjct: 3   MKSRFRGFLPVIIDMETGGFSSSTDAILELAATIIRMDDSGHVAVHETHSFNVAPFEGAN 62

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS 106
            +  A+  TGI P    R+   E +    + Q           N  I+  +N  FD  + 
Sbjct: 63  IEQSALDFTGIDPWHPFREAHSEKDALAELFQVVRREIRDQECNRAILVGHNAHFDAGFL 122

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R       +   +      L  +       +                    L   
Sbjct: 123 NAAVERCEIKRNPFHPFSHFDTATLSGLAYGQTVLAKSC-----------------LEAG 165

Query: 167 NGIEHVNAHDAKADVYATLALVWLIREK 194
              ++  AH A  D   T  L   I  +
Sbjct: 166 IPFDNEQAHSAAYDAERTAELFCSIVNR 193


>gi|150009317|ref|YP_001304060.1| putative DNA polymerase III subunit epsilon [Parabacteroides
           distasonis ATCC 8503]
 gi|256841885|ref|ZP_05547391.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|149937741|gb|ABR44438.1| putative DNA polymerase III epsilon chain [Parabacteroides
           distasonis ATCC 8503]
 gi|256736779|gb|EEU50107.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 181

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 57/205 (27%), Gaps = 28/205 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +             ++  W  ++S      +P  ++        I 
Sbjct: 1   MERFAAIDFET--ANGKRSSICSIGIAILEDDW-VVDSIYTL-VRPTPNF-YTRWTTAIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +      +   E    I           +  +N  FD+   +              
Sbjct: 56  GLTAEDTNDA-LCFEEAWESIAPKLKD---LPLVAHNSPFDEGCLKAA------------ 99

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   ++ D+    Y+F               + +LQ +A   G +    H+A AD 
Sbjct: 100 -------HEVYDLAYPKYSFYCTCRLSRKMYPFLVNHQLQTVAAHCGYDLTRHHNAMADA 152

Query: 182 YATLALVWLIREKKPKLFEYLYDYR 206
           YA   +   +  +K           
Sbjct: 153 YACAHIALTMMREKEVDTLEALMAS 177


>gi|15598428|ref|NP_251922.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1]
 gi|107102762|ref|ZP_01366680.1| hypothetical protein PaerPA_01003829 [Pseudomonas aeruginosa PACS2]
 gi|218890575|ref|YP_002439439.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58]
 gi|254236194|ref|ZP_04929517.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719]
 gi|254241920|ref|ZP_04935242.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192]
 gi|9949354|gb|AAG06620.1|AE004746_4 probable nuclease [Pseudomonas aeruginosa PAO1]
 gi|126168125|gb|EAZ53636.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719]
 gi|126195298|gb|EAZ59361.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192]
 gi|218770798|emb|CAW26563.1| probable nuclease [Pseudomonas aeruginosa LESB58]
          Length = 208

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 49/181 (27%), Gaps = 20/181 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET   D           V V R    +      + +P      D E++ I  +    
Sbjct: 35  LDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSL--DAESIRIHKLRRAD 92

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                 +E +  R++  F    +  ++GY         +R+   R   D    +     S
Sbjct: 93  LEGQLQLE-QALRQVLAFI--GDRPLLGYYLSFDVAVLNRH--LRQLLDRQLHNPSIEIS 147

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
                 V R                D     +   LA A  +     H A  D  A   +
Sbjct: 148 SLYHRKVSR-------------HFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALM 194

Query: 188 V 188
            
Sbjct: 195 F 195


>gi|94311510|ref|YP_584720.1| oligoribonuclease [Cupriavidus metallidurans CH34]
 gi|93355362|gb|ABF09451.1| oligoribonuclease [Cupriavidus metallidurans CH34]
          Length = 205

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 26/147 (17%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
           N+ V  D E  G     DR  + A V  D +   +    V         +  P+AV    
Sbjct: 13  NNLVWLDMEMTGLQPDTDRIIEVAVVVTDSELNILAEGPVL-------VIHQPDAVLDAM 65

Query: 60  ------ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                   G +   +K     + EA+    +  F       N   +  N+I  D  +   
Sbjct: 66  DNWNKGTHGRSGLIEKVKASTLTEAQAEAELLAFLKRWVPANKSPMCGNSICQDRRFMAR 125

Query: 109 -----IFYRNFYDSYRWSWDNGNSRWD 130
                  + ++ +    +      RW+
Sbjct: 126 YMPKLESFFHYRNLDVSTLKELCKRWE 152


>gi|302563935|ref|NP_001180742.1| oligoribonuclease, mitochondrial [Macaca mulatta]
 gi|90080269|dbj|BAE89616.1| unnamed protein product [Macaca fascicularis]
          Length = 237

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|255306302|ref|ZP_05350473.1| putative exonuclease [Clostridium difficile ATCC 43255]
          Length = 258

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 62/229 (27%), Gaps = 38/229 (16%)

Query: 5   FVIYDYETFGRDVALD--------------RPAQFAGVRVDRQWEKIESTEVFFCKPADD 50
           ++I+D E    +   D                 Q   +++D ++  I++    + KP   
Sbjct: 3   YIIFDLE---FNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNS-YIKPTIY 58

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
               P    +T I             E      +F S  +  +  +              
Sbjct: 59  KEIHPFISRMTNIKNSDFNDSP-TFPEVYNNFIKFISSQDPILCVWGAGDL------KEL 111

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
           YRN       S     S  ++                    +    S  LQ+      ++
Sbjct: 112 YRNINYHKLPSNSLPKSYINI-----------QQHASKYFNNPAGKSIGLQNAISILELD 160

Query: 171 HVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
              + H+A  D Y T  +   I      + +       K +  +  + +
Sbjct: 161 EKMSYHNALNDAYYTAKVFIKIYNP-SIVPDIYLYTSIKPKTIRYSNKK 208


>gi|224496106|ref|NP_056338.2| oligoribonuclease, mitochondrial precursor [Homo sapiens]
 gi|55637001|ref|XP_508768.1| PREDICTED: oligoribonuclease, mitochondrial isoform 2 [Pan
           troglodytes]
 gi|116242694|sp|Q9Y3B8|ORN_HUMAN RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
           exonuclease 2 homolog; AltName: Full=Small fragment
           nuclease; Flags: Precursor
 gi|62897961|dbj|BAD96920.1| small fragment nuclease variant [Homo sapiens]
 gi|79158846|gb|AAI07888.1| REXO2 protein [Homo sapiens]
 gi|85397890|gb|AAI05025.1| Small fragment nuclease [Homo sapiens]
 gi|85397892|gb|AAI05027.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Homo sapiens]
 gi|119587654|gb|EAW67250.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_b
           [Homo sapiens]
 gi|189065256|dbj|BAG34979.1| unnamed protein product [Homo sapiens]
 gi|219520365|gb|AAI43702.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Homo sapiens]
          Length = 237

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|325266418|ref|ZP_08133095.1| oligoribonuclease [Kingella denitrificans ATCC 33394]
 gi|324981861|gb|EGC17496.1| oligoribonuclease [Kingella denitrificans ATCC 33394]
          Length = 182

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VF 59
            N+    D E  G +   D+  + A +  D+    +  + V+    +D+ L   +A    
Sbjct: 4   QNNLCWLDMEMTGLNPDSDKIIEIAMIITDKDLNVLAQSPVYAIHQSDEILNGMDAWCTA 63

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+T ++       EAE    +  +        T  +  N I  D  +      R 
Sbjct: 64  THARTGLT-ERVRASTHTEAEVEEALLAWMQEWIPAKTTPMCGNTIHQDRRFMVRYMPRL 122

Query: 114 FYDSYRW 120
               +  
Sbjct: 123 EAYFHYR 129


>gi|262273269|ref|ZP_06051084.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262222642|gb|EEY73952.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 207

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 54/190 (28%), Gaps = 20/190 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET   D         A  ++               + A   L   ++V I GI  
Sbjct: 31  VALDCETTSLDPHKAELVTIAATKIRGNTIVTSDPLTLSLR-APHSL-TEQSVKIHGIRH 88

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q     GV E E  + + +F    N  I+GY          R       +          
Sbjct: 89  QDLHD-GVTEKEAMQALIEF--AGNRPIVGYYIHYDKTILDRYTRKHLGF-------KLP 138

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           NS  ++ D+ R                +      ++ +    G+     HDA  D  +  
Sbjct: 139 NSTIEVSDIYRRKLE--------QILPNAYYDLSMEAIGHHLGLPLSGRHDALDDAISAA 190

Query: 186 ALVWLIREKK 195
            +   ++   
Sbjct: 191 LIYIRLKYGD 200


>gi|255014610|ref|ZP_05286736.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides sp.
           2_1_7]
 gi|293373643|ref|ZP_06619990.1| exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|292631298|gb|EFF49929.1| exonuclease [Bacteroides ovatus SD CMC 3f]
          Length = 163

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 54/190 (28%), Gaps = 28/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V R  E  ++       P  +Y  +     + 
Sbjct: 1   MKDFAAIDFET--ANNQRSSVCSVGIVIV-RDGEITDTFYSLI-NPEPNY-YNYWCSQVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +      V   E  R+I           +  +N  FD+   + +F     D     
Sbjct: 56  GLTRKDTDNAPV-FPEVWRQIEPLIE---GLPLVAHNRPFDEGCLKAVFRVYQMD----- 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                            Y F               + +L  +A A G +  N H A AD 
Sbjct: 107 --------------YPCYEFYDTLSASRRALPCLPNHQLHTVAEACGYQLKNHHHALADA 152

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 153 EACAWIAREI 162


>gi|254282911|ref|ZP_04957879.1| ribonuclease T [gamma proteobacterium NOR51-B]
 gi|219679114|gb|EED35463.1| ribonuclease T [gamma proteobacterium NOR51-B]
          Length = 214

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 62/194 (31%), Gaps = 30/194 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   V    + I + +   C   +P +    +P A+  TG
Sbjct: 19  VVIDVETGGFNADTDAVLEIAATLVGMNDDGILTPKQTLCHNVEPFEGANLEPSALEFTG 78

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P+  LRD V EA     I             N  I+  +N  FD  +      R    
Sbjct: 79  IDPESPLRDAVPEAIAFGEIFSAIRKEIREQGCNRAILVGHNAHFDAGFINAASMRADIK 138

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
              +      S +D   +    Y  +                 L       GI+  N  A
Sbjct: 139 RNPFH---PFSHFDTATLAGLAYGQTV----------------LAKACRTAGIDFDNNEA 179

Query: 175 HDAKADVYATLALV 188
           H A  D   T  L 
Sbjct: 180 HSAAYDAAKTAELF 193


>gi|88800702|ref|ZP_01116261.1| oligoribonuclease [Reinekea sp. MED297]
 gi|88776566|gb|EAR07782.1| oligoribonuclease [Reinekea sp. MED297]
          Length = 182

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            ++ +  D E  G +   D+  + A +  D+    +          +D  L   D     
Sbjct: 4   KSNLIWIDLEMTGLNPETDQILEIATIVTDKDLNVLAEGPSLVIHQSDAVLDGMDEWCTT 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   +K     +  A+       F           +  N+I  D  +         
Sbjct: 64  HHGESGLTEKVRNSSISVAQAEAETLAFVEQWVEPGCSPLCGNSIWQDRRFLIRYMPALD 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 SYCHYR 129


>gi|317485586|ref|ZP_07944462.1| exonuclease [Bilophila wadsworthia 3_1_6]
 gi|316923123|gb|EFV44333.1| exonuclease [Bilophila wadsworthia 3_1_6]
          Length = 169

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 54/192 (28%), Gaps = 31/192 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D+ET   D   D        +V R  E +++       P    L      ++ GIT
Sbjct: 6   YVALDFET--ADYQPDSACAVGLAKV-RGGEVVDTLYSLIRPPRRRVLF----TWVHGIT 58

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          EF  ++  F        +  +N  FD          N           
Sbjct: 59  WKDVQGSP-TFLEFWPQMASFLQ--GVTHLVAHNAPFDRRVLEACCQSNGI--------- 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +  +R              R     S KL  +    GI   + H   +D  A 
Sbjct: 107 ALPDLPFVCTLRESR-----------RKLKLPSHKLDAVCRCCGIPLDHHHAG-SDAIAA 154

Query: 185 LALVWLIREKKP 196
             ++  ++ +  
Sbjct: 155 ARILIYLQGESQ 166


>gi|302782960|ref|XP_002973253.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
 gi|300159006|gb|EFJ25627.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
          Length = 175

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 27/191 (14%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            V YD ET        +     +F  V V  R   +++S      +P+   L  P +V  
Sbjct: 2   IVFYDVETT-VPEVKGQGYDILEFGAVVVSARGLGELDSFTTL-VRPSSLALVSPRSVSC 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI     +       E + R+H           G+N +RFD        + +       
Sbjct: 60  NGIVQDSLVGAP-SFLEIADRVHALL--HGRVWAGHNILRFD-NLRIKEAFAS----IGR 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +        D   ++R  +               A + K+  LA   G+     H + AD
Sbjct: 112 AGPEAAGHIDTFPLLRKSF------------GQRAGNLKMATLASYFGLG-KQEHRSLAD 158

Query: 181 VYATLALVWLI 191
           V   + ++ L 
Sbjct: 159 VRMNIEVLKLC 169


>gi|254524060|ref|ZP_05136115.1| ribonuclease T [Stenotrophomonas sp. SKA14]
 gi|219721651|gb|EED40176.1| ribonuclease T [Stenotrophomonas sp. SKA14]
          Length = 194

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 61/207 (29%), Gaps = 31/207 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYL 52
           M+  F     V+ D ET G D   +   + A V ++     +     T      PA+   
Sbjct: 1   MSQRFRGFLPVVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLE 60

Query: 53  PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            DP+++ +TGI        A  +          +            I+  +N  FD  + 
Sbjct: 61  IDPKSLEVTGIILDHPFRLAKEEKAALDHIFVPVRAAMKKYGCQRAILVGHNAHFDLGFV 120

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R  +    +      S +D + +    Y              G T       A  
Sbjct: 121 NAAVARTGHKRNPFH---PFSVFDTVTLAGIAY--------------GQTVLARAATAAG 163

Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
            G +   AH A  D   T  L   I  
Sbjct: 164 LGWDANEAHSAVYDTEQTARLFCTIAN 190


>gi|86151527|ref|ZP_01069741.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315123999|ref|YP_004066003.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85841156|gb|EAQ58404.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315017721|gb|ADT65814.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 253

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 31/187 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  V+     +    ++ +  ++I   + F  K  +          +TGIT
Sbjct: 72  FCIVDIESTGG-VSKGEILEIGAAKI-QNSKEIGRFQSF-VKVKE---IPENITELTGIT 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +         A+       F       I   +N+RFD  +         +         
Sbjct: 126 YEMVENAP-SLAKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGFGILLN---- 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   ++  +                  +  +KL+ L    G+E+ + H A  D  A 
Sbjct: 178 --RRICTIEFAQCC--------------IESPKYKLEVLKEFLGVENTH-HRALDDALAA 220

Query: 185 LALVWLI 191
             +    
Sbjct: 221 AEIFKYC 227


>gi|254974887|ref|ZP_05271359.1| putative exonuclease [Clostridium difficile QCD-66c26]
 gi|255092274|ref|ZP_05321752.1| putative exonuclease [Clostridium difficile CIP 107932]
 gi|255314014|ref|ZP_05355597.1| putative exonuclease [Clostridium difficile QCD-76w55]
 gi|255516694|ref|ZP_05384370.1| putative exonuclease [Clostridium difficile QCD-97b34]
 gi|255649792|ref|ZP_05396694.1| putative exonuclease [Clostridium difficile QCD-37x79]
 gi|306519894|ref|ZP_07406241.1| putative exonuclease [Clostridium difficile QCD-32g58]
          Length = 258

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 62/229 (27%), Gaps = 38/229 (16%)

Query: 5   FVIYDYETFGRDVALD--------------RPAQFAGVRVDRQWEKIESTEVFFCKPADD 50
           ++I+D E    +   D                 Q   +++D ++  I++    + KP   
Sbjct: 3   YIIFDLE---FNQGFDKKLNKTVSNEKCPFEIIQIGAIKLDSKFNIIDTFNS-YVKPTIY 58

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
               P    +T I             E      +F S  +  +  +              
Sbjct: 59  KDIHPFISRMTNIKNSDFNDSP-TFPEVYNNFIKFISSQDPILCVWGVGDL------KEL 111

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
           YRN       S     S  ++                    +    S  LQ+      ++
Sbjct: 112 YRNINYHKLPSSSLPKSYINI-----------QQHASKYFNNPAGKSIGLQNAISILELD 160

Query: 171 HVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
              + H+A  D Y T  +   I      + +       K +  +  + +
Sbjct: 161 EKMSYHNALNDAYYTAKVFIKIYNP-SIVPDIYLYTSIKPKTIRYSNKK 208


>gi|238020295|ref|ZP_04600721.1| hypothetical protein GCWU000324_00173 [Kingella oralis ATCC 51147]
 gi|237867275|gb|EEP68281.1| hypothetical protein GCWU000324_00173 [Kingella oralis ATCC 51147]
          Length = 192

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   D+  + A +  D+    +  +EVF    +D+ +   D     
Sbjct: 4   QNNLCWLDMEMTGLNPETDKIIEVAMIITDKDLNVLAQSEVFAIHQSDEIMDNMDEWCTT 63

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+T  +       EAE  +++  F           +  N I  D  +      R 
Sbjct: 64  THARTGLT-ARVKASSYNEAEVEQKLLDFMGEWLPAKASPMCGNTIHQDRRFMVKYMPRL 122

Query: 114 FYDSYRW 120
               +  
Sbjct: 123 EAFFHYR 129


>gi|6755877|ref|NP_036037.1| three prime repair exonuclease 2 [Mus musculus]
 gi|47606218|sp|Q9R1A9|TREX2_MOUSE RecName: Full=Three prime repair exonuclease 2; AltName: Full=3'-5'
           exonuclease TREX2
 gi|5731111|gb|AAD48777.1| 3'-5' exonuclease TREX2 [Mus musculus]
 gi|74354406|gb|AAI04385.1| Three prime repair exonuclease 2 [Mus musculus]
 gi|74355394|gb|AAI04386.1| Three prime repair exonuclease 2 [Mus musculus]
 gi|123212392|emb|CAM27430.1| three prime repair exonuclease 2 [Mus musculus]
 gi|148697953|gb|EDL29900.1| three prime repair exonuclease 2 [Mus musculus]
          Length = 236

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 34/209 (16%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRV----------DRQW-----EKIESTEVFFCK 46
             FV  D E  G    +D   A+ +   V          D          ++   +  C 
Sbjct: 8   ETFVFLDLEATGL-PNMDPEIAEISLFAVHRSSLENPERDDSGSLVLPRVLDKLTLCMC- 65

Query: 47  PADDYLPDPEAVFITGITPQKALRDGV--VEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102
              +     +A  ITG++ +  +  G         R +  F S      C++ +N   +D
Sbjct: 66  --PERPFTAKASEITGLSSESLMHCGKAGFNGAVVRTLQGFLSRQEGPICLVAHNGFDYD 123

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
                    R      + +        D L  +R +      G +      G  S+ L  
Sbjct: 124 FPLLCTELQRLGAHLPQDT-----VCLDTLPALRGLDRAHSHGTR----AQGRKSYSLAS 174

Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190
           L       E   AH A+ DV+  L +   
Sbjct: 175 LFHRYFQAEPSAAHSAEGDVHTLLLIFLH 203


>gi|260577531|ref|ZP_05845471.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC
           43734]
 gi|258604335|gb|EEW17572.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC
           43734]
          Length = 214

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 47/172 (27%), Gaps = 30/172 (17%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G D    R    A V +  +  +    E+             +A  + GIT + 
Sbjct: 4   FDLETTGVDPKTARIVTSALVTI--KGRERNDIEMLA---DPGVEIPQQASDVHGITTEY 58

Query: 68  ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A   G    E   +  +           +I YN                       S+  
Sbjct: 59  AREHGQDHGEVLAKTIEGIRAAWRSGATLIVYNAAYDLSVLRALE----------PSFTV 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +D   V RA   +                  L+ +    G+   NAH+
Sbjct: 109 DGPVFDPYVVDRAKDQYR------------KGKRTLESVCQHYGVTLDNAHE 148


>gi|328472277|gb|EGF43147.1| oligoribonuclease [Vibrio parahaemolyticus 10329]
          Length = 181

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  D     
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +     ++     + E +   +  +F           I  N+I  D  +      
Sbjct: 66  HTASGL----VERVRNSKISEQDAVTQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 122 ELEEYFHYR 130


>gi|329767022|ref|ZP_08258550.1| hypothetical protein HMPREF0428_00247 [Gemella haemolysans M341]
 gi|328837747|gb|EGF87372.1| hypothetical protein HMPREF0428_00247 [Gemella haemolysans M341]
          Length = 616

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/326 (13%), Positives = 103/326 (31%), Gaps = 44/326 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F + D E            QF+  ++D+ +++IES   ++ KP       P    +
Sbjct: 1   MNKLFCVVDIELT----EEKEIIQFSATKLDQNFKEIESIN-YYIKPKKQV--SPFVTEL 53

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI         +   + ++ ++ F       I+  + +  D    +  F+      +  
Sbjct: 54  TGINNDMLSEK-LYFEDVAKELYDFIKE---DILVCHGLPSDYVILKKRFHDVGIRYHAK 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKA 179
                    D +++ R                    S++L DL+ +  +   +  H+A  
Sbjct: 110 M------SLDTVELARLF-------------MPTQESYRLSDLSNSLALYSGDGYHNAAI 150

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DV  T+ L+  I ++   +    +       L + ID   +    +   +    +     
Sbjct: 151 DVQVTVELLKEISKRIANINSNNFK--KIEVLLEKIDYNTLKFSRYCKRIIRGKKIKKED 208

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
                                 +    + ++ +    +F+S  E K +    I+   + K
Sbjct: 209 FINFDG-----------VDFKKVSYNVNDNNFKDKFIMFSSISEKKYIDNFKIRNYVILK 257

Query: 300 CPILMPIDYCKKEHFERWGIDHKRCL 325
                      K   ++  ++  + L
Sbjct: 258 EKSNYVPLNVFKLFPKKEDLNLDKLL 283


>gi|285018765|ref|YP_003376476.1| ribonuclease t (exoribonuclease t) (rnase t) protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473983|emb|CBA16484.1| probable ribonuclease t (exoribonuclease t) (rnase t) protein
           [Xanthomonas albilineans]
          Length = 217

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 56/211 (26%), Gaps = 39/211 (18%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52
           M+  F     V+ D ET G D       + A + +  D   +     T      PA   +
Sbjct: 17  MSRRFRGYLPVVVDVETGGFDWNRHALLEIAVIPIEMDAAGKLSPGDTASAHVVPAPGTV 76

Query: 53  PDPEAVFITGITPQKALRDG----VVEAEFSRR----IHQFFSVPNT--CIIGYNNIRFD 102
            DP+++ ITGI     L         E E        +            I+  +N  FD
Sbjct: 77  IDPKSLEITGI----VLDHPFRLAKPEREALEHVFTPVRAAVKKYGCQRAILVGHNAHFD 132

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
             +      R  +    +   +      L  +       +                    
Sbjct: 133 LNFLNATVARCGHKRNPFHPFSVFDTVTLAGIAYGQTVLARAVQ---------------- 176

Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIRE 193
            A        +AH A  D   T  L   I  
Sbjct: 177 -AAGFEWSAADAHSAVYDTEQTARLFCKIAN 206


>gi|167763751|ref|ZP_02435878.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC
           43183]
 gi|167697867|gb|EDS14446.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC
           43183]
          Length = 163

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 54/193 (27%), Gaps = 34/193 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V R  E  +S      +P  +Y        + 
Sbjct: 1   MENFAAIDFET--ANEQRTSVCSVGVVIV-RNGEIADSYYSLI-RPEPEY-YTYWNTRVH 55

Query: 62  GITPQKALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           G+T     R  V  A   E + RI           +  +N  FD+   + +F     D  
Sbjct: 56  GLTLADTSRSPVFPAVWQEIAPRIE-------GLTLVAHNKAFDESCLKAVFRMYGMD-- 106

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                               Y F            G   ++L  +A   G      H A 
Sbjct: 107 -----------------YPDYDFRCTLQASRRAIKGLPDYQLHTVAAWCGYRLEQHHHAL 149

Query: 179 ADVYATLALVWLI 191
           AD  A   +   I
Sbjct: 150 ADAEACAWIARQI 162


>gi|269964116|ref|ZP_06178417.1| oligoribonuclease [Vibrio harveyi 1DA3]
 gi|269831150|gb|EEZ85308.1| oligoribonuclease [Vibrio harveyi 1DA3]
          Length = 181

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  D     
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +     ++     + E +   +  +F           I  N+I  D  +      
Sbjct: 66  HTASGL----VERVQNSQISEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 122 ELEEYFHYR 130


>gi|227432020|ref|ZP_03914039.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352218|gb|EEJ42425.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 177

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 56/191 (29%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +         A V V    + ++           +         I G+
Sbjct: 2   NFVAMDFET--ANREKHSAVSIALVIVRDN-QVVDKFYSL---IKPETTFSSYNTAIHGL 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q          E  + I  FF+     ++  +N  FD+   +        D       
Sbjct: 56  HRQDVADAPK-FPEVWQTISPFFTENK--LVVAHNASFDNSILKGTLQYYDIDE------ 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + LLD ++      P+              KL  +A   GI   + H+A  D  A
Sbjct: 107 ---PHYLLLDTVQTSRKLFPNFEN----------HKLNTVAGNLGITLDHHHNALDDAVA 153

Query: 184 TLALVWLIREK 194
              ++      
Sbjct: 154 AANILIYESNH 164


>gi|297530374|ref|YP_003671649.1| exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3]
 gi|297253626|gb|ADI27072.1| Exonuclease RNase T and DNA polymerase III [Geobacillus sp. C56-T3]
          Length = 242

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 13/132 (9%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           FVI D ET G      D     A  +        ++          +         +TGI
Sbjct: 62  FVIIDMETTGFSPEQGDEILAMAAAKT-VGGVVTDAYMTL---VKPEKPIPEHISALTGI 117

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  +      AE  R    F +     +IGY+    D  + R+  +R+    YR  W 
Sbjct: 118 EAKDVVFAP-PLAEALRTFVPFIAA--GVLIGYHIGH-DLAFLRHALWRH----YRQKWS 169

Query: 124 NGNSRWDLLDVM 135
                   +  +
Sbjct: 170 GRFVDLQPMMTL 181


>gi|218510298|ref|ZP_03508176.1| DNA polymerase III subunit epsilon [Rhizobium etli Brasil 5]
          Length = 72

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
          +I+D ET G D  +DR  +  G+ +   +    +T   +  P  D    P+A+ + GIT 
Sbjct: 4  IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINP-GDQKVHPDALAVHGITD 61

Query: 66 QKALRD 71
          +     
Sbjct: 62 EFLKDK 67


>gi|157374989|ref|YP_001473589.1| ribonuclease T [Shewanella sediminis HAW-EB3]
 gi|157317363|gb|ABV36461.1| ribonuclease T [Shewanella sediminis HAW-EB3]
          Length = 223

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 70/211 (33%), Gaps = 30/211 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D +    ++ T  +  +P +    +PEA+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEIAVTMLKMDDEGVLGLDKTLHYHIEPFEGANLEPEALAFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  II  +N  FD  +      RN   
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSKAVERNGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
               +  +  + +D   +       +                 L       GI   N  A
Sbjct: 140 ---RTPFHPFATFDTATLAGLAIGHTV----------------LAKACSIAGIPFDNNEA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDY 205
           H A  D   T  L  LI  +   L  +    
Sbjct: 181 HSALYDTERTAELFCLIVNRWKALGGWPLAT 211


>gi|74214051|dbj|BAE29442.1| unnamed protein product [Mus musculus]
          Length = 228

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 30  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 89

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      V   +       F      P  C +  N++  D  +      + 
Sbjct: 90  EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 149

Query: 114 FYDSYRW 120
               +  
Sbjct: 150 MKHLHYR 156


>gi|114562985|ref|YP_750498.1| DNA polymerase III subunit epsilon [Shewanella frigidimarina NCIMB
           400]
 gi|114334278|gb|ABI71660.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           frigidimarina NCIMB 400]
          Length = 238

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 54/197 (27%), Gaps = 24/197 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK------PADDYLPDPEAV 58
           FV  D+ET G D   +       V          + +  FC+               +++
Sbjct: 48  FVALDFETTGLDSQKNSIISIGLVPF--------TLQRIFCRKAKKWYLNPKDKLQEDSI 99

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GIT            +    + Q  +     ++  +    +  +  +       +  
Sbjct: 100 IIHGITHSDLQDAP----DLLLILEQLLNELAGKVVVVHYRHIERDFLDHTLRMLINEGI 155

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                      D + +   +      G+    +     S +L +      +     HDA 
Sbjct: 156 V------FPVIDTMQIEANVQREKSQGLFNFFKRKRTESIRLANSRERYHLPAYAPHDAL 209

Query: 179 ADVYATLALVWLIREKK 195
            D  AT  L+    +  
Sbjct: 210 TDAIATAELLQAQIKYH 226


>gi|314934059|ref|ZP_07841422.1| exonuclease [Staphylococcus caprae C87]
 gi|313653170|gb|EFS16929.1| exonuclease [Staphylococcus caprae C87]
          Length = 184

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 31/203 (15%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M ++ FV  D+ET   +           V+V    +  ES                  + 
Sbjct: 1   MADNAFVALDFET--ANGKRTSICSVGMVKVINN-QITESFYTL---VNPFDYFTETNIN 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI P+        E      + QF +      +  +N  FD             ++  
Sbjct: 55  VHGIRPEDVEDAPSFEY-VYPYMLQFINE---LPVVAHNAAFDMNVLHQSLKSLNIETPS 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            ++                        Q   R   A  + L+ L     ++    HDA  
Sbjct: 111 MTY--------------------FCSYQLAKRTIDAYRYGLKHLMNHYQLDFHGHHDALN 150

Query: 180 DVYATLALVWLIREKKPKLFEYL 202
           D  A   + + + +    L   L
Sbjct: 151 DAKACAMITFRLLKHYDDLPSML 173


>gi|218548595|ref|YP_002382386.1| exodeoxyribonuclease X [Escherichia fergusonii ATCC 35469]
 gi|218356136|emb|CAQ88753.1| DNA exonuclease X [Escherichia fergusonii ATCC 35469]
 gi|324113580|gb|EGC07555.1| exonuclease [Escherichia fergusonii B253]
 gi|325497013|gb|EGC94872.1| exodeoxyribonuclease X [Escherichia fergusonii ECD227]
          Length = 220

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 64/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G         + A V V    +   +      +P  D    P+A+ I  IT  
Sbjct: 4   VIDTETCGL---QGGIVEIASVDV-VDGKIT-NPMSHLVRP--DRPITPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-EVIPHYY------GSDWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLSRHL------WPGIKYSNMALYKSRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ +A  
Sbjct: 145 -ALLIDIMNVSGW-----------TAEQMANITGRPALLTT--FTFGKYRGKAVSEIAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|215405762|ref|ZP_03417943.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           02_1987]
 gi|215413638|ref|ZP_03422306.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           94_M4241A]
 gi|215448050|ref|ZP_03434802.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
 gi|289747550|ref|ZP_06506928.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           02_1987]
 gi|289759871|ref|ZP_06519249.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
 gi|294995379|ref|ZP_06801070.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 210]
 gi|298527188|ref|ZP_07014597.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis 94_M4241A]
 gi|289688078|gb|EFD55566.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           02_1987]
 gi|289715435|gb|EFD79447.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
 gi|298496982|gb|EFI32276.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis 94_M4241A]
 gi|326905550|gb|EGE52483.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           W-148]
          Length = 329

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 28/182 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD  +          +         +
Sbjct: 73  MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R +     +              +L+ LA   G+     HDA  DV     
Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDVRVLTG 169

Query: 187 LV 188
           ++
Sbjct: 170 IL 171


>gi|260198755|ref|ZP_05766246.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T46]
 gi|289441146|ref|ZP_06430890.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T46]
 gi|289414065|gb|EFD11305.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T46]
          Length = 319

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD  +          +         +
Sbjct: 73  MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R +     +              +L+ LA   G+     HDA  D      
Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169

Query: 187 LV 188
           ++
Sbjct: 170 IL 171


>gi|257467741|ref|ZP_05631837.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062034|ref|ZP_07926519.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
 gi|313687710|gb|EFS24545.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
          Length = 186

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 68/196 (34%), Gaps = 22/196 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +  D ET G         Q +G+   +  +++     F+ KP        EA+ I G 
Sbjct: 2   KILFVDTETGGI-TERSALIQLSGIV--QIGKEVAEEFNFYIKPFPGSEVTDEALKIQGR 58

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           T ++       E E   +  +  +         +  ++G  N+RFD         RN   
Sbjct: 59  TREEVETYD-SEEEVFIKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINRFLKRNG-- 115

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                +     +   LD ++ I A      Q   +       KL+      GIE   AHD
Sbjct: 116 ---EKYLFSYIQATTLDPLQWIAAL-----QLLKKIPVLKDNKLETWCNHFGIEL-KAHD 166

Query: 177 AKADVYATLALVWLIR 192
           +  D+ AT AL   + 
Sbjct: 167 SLEDIKATKALTKKMM 182


>gi|215424954|ref|ZP_03422873.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T92]
 gi|289748229|ref|ZP_06507607.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T92]
 gi|289688816|gb|EFD56245.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T92]
          Length = 329

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD  +          +         +
Sbjct: 73  MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R +     +              +L+ LA   G+     HDA  D      
Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169

Query: 187 LV 188
           ++
Sbjct: 170 IL 171


>gi|219559793|ref|ZP_03538869.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T17]
 gi|289571955|ref|ZP_06452182.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T17]
 gi|289545709|gb|EFD49357.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           T17]
          Length = 284

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD  +          +         +
Sbjct: 73  MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R +     +              +L+ LA   G+     HDA  D      
Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169

Query: 187 LV 188
           ++
Sbjct: 170 IL 171


>gi|215432688|ref|ZP_03430607.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           EAS054]
          Length = 347

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD  +          +         +
Sbjct: 73  MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R +     +              +L+ LA   G+     HDA  D      
Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169

Query: 187 LV 188
           ++
Sbjct: 170 IL 171


>gi|33519827|ref|NP_878659.1| ribonuclease T [Candidatus Blochmannia floridanus]
 gi|54036331|sp|Q7VR55|RNT_BLOFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|33504172|emb|CAD83434.1| ribonuclease T [Candidatus Blochmannia floridanus]
          Length = 223

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 59/199 (29%), Gaps = 29/199 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + + +   + A +  +++      +++   F  K     +  PEA+ +  
Sbjct: 20  VVIDVETSGLNASTNALLEIATITLKMNEDGWLHVDNMLHFHIKSFPGAILQPEALALNK 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           N  II  +N  FD  +      R    
Sbjct: 80  INPNSPLRFAVTEQEALVEIFKMVHVGIKAQQCNKAIIVAHNASFDHSFLMAATERTN-- 137

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                 DN    +   D            +             L       GI      A
Sbjct: 138 ---NIQDNPFHPFVTFDTAALSGLVFGQTV-------------LSKACEYAGIIFDKNKA 181

Query: 175 HDAKADVYATLALVWLIRE 193
           H A  D   T  L   +  
Sbjct: 182 HSALYDAEKTAILFCTLVN 200


>gi|146279555|ref|YP_001169713.1| transposase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557796|gb|ABP72408.1| Transposase and inactivated derivatives-like protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 282

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 64/215 (29%), Gaps = 29/215 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D ET   +  +    Q   V  +   E    + +       +   DP  V I GI
Sbjct: 2   KFVVLDVET--ANPRMSSICQIGLVTFEGGVEVAAESHL----IDPEDHFDPVNVAIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    + +     E   R+    +     ++  +   FD      +   +   +   SW 
Sbjct: 56  TAAAVVGEP-TFREVYGRVCDLTA---GTVVACH-THFDRVALSRVCELHALPTLSCSW- 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   LD  R               +   + + L +LA   GI     HDA  D  A
Sbjct: 110 --------LDTARVAR--------RAWVEFSKSGYGLSNLARHFGI-TFQHHDALHDARA 152

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
              ++    E+            N+   +    ++
Sbjct: 153 AGLILARAIEETGHDPSEWIRLCNQATRQDRQTLR 187


>gi|296216233|ref|XP_002754546.1| PREDICTED: oligoribonuclease, mitochondrial-like [Callithrix
           jacchus]
          Length = 237

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|31794883|ref|NP_857376.1| DNA polymerase III subunit epsilon [Mycobacterium bovis AF2122/97]
 gi|121639627|ref|YP_979851.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224992123|ref|YP_002646812.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260184632|ref|ZP_05762106.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           CPHL_A]
 gi|289445310|ref|ZP_06435054.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           CPHL_A]
 gi|31620481|emb|CAD95924.1| PUTATIVE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium
           bovis AF2122/97]
 gi|121495275|emb|CAL73761.1| Putative dna polymerase III (epsilon subunit) dnaQ [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224775238|dbj|BAH28044.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289418268|gb|EFD15469.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           CPHL_A]
          Length = 329

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD  +          +         +
Sbjct: 73  MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R +     +              +L+ LA   G+     HDA  D      
Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169

Query: 187 LV 188
           ++
Sbjct: 170 IL 171


>gi|114562725|ref|YP_750238.1| exonuclease, RNase T and DNA polymerase III [Shewanella
           frigidimarina NCIMB 400]
 gi|114334018|gb|ABI71400.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           frigidimarina NCIMB 400]
          Length = 229

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 53/197 (26%), Gaps = 20/197 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D E  G D   D+      V +      ++  +      +       ++  + GI   +
Sbjct: 46  IDLEMTGLDPIHDQVISIGLVPIINGVIPLDKAQHMMISISGSV---GQSATVHGIVDNQ 102

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                +  AE       F S     I+  ++   D  + +    R F             
Sbjct: 103 LHMA-LTLAEAIDW---FLSKTKGYILVAHHAPLDIQFIQQQLIRCF------GQSIPLV 152

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D L + +         ++         S +L        +   +AH+A  D  +   L
Sbjct: 153 FIDTLAIEKKRCLMQQPVLK-------EGSLRLNASRTRYRLPVYSAHNALIDALSCAEL 205

Query: 188 VWLIREKKPKLFEYLYD 204
           +         + +    
Sbjct: 206 LLAQVSAMGDIKKLSVK 222


>gi|330812208|ref|YP_004356670.1| DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380316|gb|AEA71666.1| putative DNA polymerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 235

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     I+ ++ F      D      +V I G+ P
Sbjct: 42  VVLDLETTGLNLNKDQVLSIGAVVIEDGA--IDFSQQFERTLQCDKQKLGPSVLIHGLAP 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G   AE      +F    ++ ++ ++       +  ++  R   D     +   
Sbjct: 100 S-AIAAGSDPAEALLAFMEFV--GDSPLLAFH-----APFDSHMLGRALKD--YLGYRLQ 149

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +S  D+ D+   +                     L +      ++  + H+A AD  AT 
Sbjct: 150 HSFLDVADLAPMLCP-----------QANLRKSGLDEWIDWFKLQVFDRHNASADALATA 198

Query: 186 ALVWLIREKKPKL 198
            L  ++  +  + 
Sbjct: 199 ELALILFSRARQQ 211


>gi|126173968|ref|YP_001050117.1| ribonuclease T [Shewanella baltica OS155]
 gi|217973711|ref|YP_002358462.1| ribonuclease T [Shewanella baltica OS223]
 gi|166200018|sp|A3D3D5|RNT_SHEB5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|125997173|gb|ABN61248.1| RNAse T [Shewanella baltica OS155]
 gi|217498846|gb|ACK47039.1| ribonuclease T [Shewanella baltica OS223]
          Length = 223

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D +    I+ T  F  +P +    +PEA+   G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +        S  +  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
               S  +  + +D   +       +                 L    +  GI   N  A
Sbjct: 140 ---RSPFHPFATFDTATLAGLAIGHTV----------------LAKACIMAGIPFDNKEA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAELFCHIVNR 200


>gi|289755840|ref|ZP_06515218.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon
           [Mycobacterium tuberculosis EAS054]
 gi|289696427|gb|EFD63856.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon
           [Mycobacterium tuberculosis EAS054]
          Length = 330

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD  +          +         +
Sbjct: 73  MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R +     +              +L+ LA   G+     HDA  D      
Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169

Query: 187 LV 188
           ++
Sbjct: 170 IL 171


>gi|74152556|dbj|BAE42568.1| unnamed protein product [Mus musculus]
          Length = 224

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 26  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 85

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      V   +       F      P  C +  N++  D  +      + 
Sbjct: 86  EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 145

Query: 114 FYDSYRW 120
               +  
Sbjct: 146 MKHLHYR 152


>gi|323498776|ref|ZP_08103762.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323316138|gb|EGA69163.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 210

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 51/193 (26%), Gaps = 20/193 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET   D         A  ++            F  +       D  +V I  I 
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAAAKIIDNRIITSRP--FEVRLRAPQSLDSNSVKIHQIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +  G+ E +   ++ +F    N  ++GY+                 +       + 
Sbjct: 88  HKDLVD-GIDEKQALIQLLEFI--GNRPLVGYHIRYDKKILDLACRRHLGFPLPNPLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+                   +      L+ +     +   N HDA  D  + 
Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLEAICKHLDLPMQNKHDALQDAISA 189

Query: 185 LALVWLIREKKPK 197
             +   + +    
Sbjct: 190 ALVFVRLTKGDLP 202


>gi|326382785|ref|ZP_08204475.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395]
 gi|326198375|gb|EGD55559.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395]
          Length = 199

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 10/130 (7%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M +  V  D E  G DV  D+  + A +  D     +           D+ L        
Sbjct: 1   MQDKLVWIDCEMTGLDVGSDKLIEIAALVTDSDLNILGEGVDVVIHADDEALAAMPDVVT 60

Query: 59  FIT---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFY 111
            +    G+T ++     V  AE  + +  +            +  N+I  D  +      
Sbjct: 61  KMHADSGLT-EEVRASTVTLAEAEKAVLDYLREHITTAGAAPLAGNSIATDRGFIARDMP 119

Query: 112 RNFYDSYRWS 121
                 +   
Sbjct: 120 ELNAYLHYRM 129


>gi|163814599|ref|ZP_02205988.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC 27759]
 gi|158450234|gb|EDP27229.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC 27759]
          Length = 227

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 57/194 (29%), Gaps = 29/194 (14%)

Query: 5   FVIYDYETFGRDVA--------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           +V  D+E    D               +   V++D ++ +I+S +  + KPA   +    
Sbjct: 11  YVFVDFEMNLIDSEHKQEKKICKSEIIEIGAVKLDDEYNEIDSFKS-YVKPAYGNMAS-R 68

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            + +TGIT +        E      + +F        + Y     D    R         
Sbjct: 69  IIKLTGITDEMLETAPSYE----DAVGRFIEWCADADVIYAWSENDLRQLRGETR----- 119

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-H 175
                      ++   ++ R    +     ++      +    L D     G     A H
Sbjct: 120 ---------LKQYTHPELERVFAKWQDFQKEYARMIGTSRRISLSDAVFYLGENFQGAEH 170

Query: 176 DAKADVYATLALVW 189
           DA  D   T  +  
Sbjct: 171 DALWDARNTAEVFK 184


>gi|218288682|ref|ZP_03492945.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241040|gb|EED08216.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 218

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 23/193 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G   A D+    A         + + +     +  D          +TG++
Sbjct: 30  YFVLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAVVRHDDVADVPSHIWELTGLS 89

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ  L  G       RR      +    +   +++R D  + +                +
Sbjct: 90  PQAVLD-GEPLDAALRR---ALELGAGRVWVAHHVRHDLSFLQR-------------VSD 132

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R  L  +            + P          L +     G+  +  H A ADV  T
Sbjct: 133 ALWRLRLRPLAIDTAVVGQALARAPRP------LTLDEACKWLGVPVIGRHQADADVRMT 186

Query: 185 LALVWLIREKKPK 197
            A+     E   +
Sbjct: 187 AAVWRKEMELCMR 199


>gi|110805789|ref|YP_689309.1| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401]
 gi|110615337|gb|ABF04004.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 220

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 67/265 (25%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSLLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD         R         W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFD---------RCVLPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+      P                +Q          ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRLWPGLKYSNMALYKTRKLNVQT------PPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
           +P Y   +     S    +   L  
Sbjct: 191 YPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|257463061|ref|ZP_05627463.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium sp. D12]
          Length = 129

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             + +D ET G         Q A + ++   E  E+    +  P  D     EA+ +T +
Sbjct: 2   KILYFDTETTGL-TYRSTIIQLAAI-IEIDGEVKETVN-LYSAPFPDSDISEEALAVTKL 58

Query: 64  TPQKA--LRDGVVEAEFSRRIH----QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           T ++        +  E   +I       ++  +      +N++FD    RN  YR     
Sbjct: 59  TREEIFRFDSPQLTCEMFTQILGKYVDKYNKNDKFTAVGHNVKFDLDMLRNWAYRCNEKF 118

Query: 118 YR 119
             
Sbjct: 119 IA 120


>gi|189402589|ref|ZP_02783395.2| YacC [Escherichia coli O157:H7 str. EC4401]
 gi|189354799|gb|EDU73218.1| YacC [Escherichia coli O157:H7 str. EC4401]
          Length = 191

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 24/190 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 14  LFLDTETTGLD-NTAEALEIG--LTDASGQVV-----FETRLKPTVAIGAQAAAVHGISE 65

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +        W   
Sbjct: 66  QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 118

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            S +  +++    Y          +   G  S            E   AH A AD   T 
Sbjct: 119 LSVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMTA 169

Query: 186 ALVWLIREKK 195
            +V  I    
Sbjct: 170 GVVNAIAAYH 179


>gi|168770686|ref|ZP_02795693.1| YacC [Escherichia coli O157:H7 str. EC4486]
 gi|189360489|gb|EDU78908.1| YacC [Escherichia coli O157:H7 str. EC4486]
          Length = 282

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 24/190 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDASGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            S +  +++    Y          +   G  S            E   AH A AD   T 
Sbjct: 210 LSVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMTA 260

Query: 186 ALVWLIREKK 195
            +V  I    
Sbjct: 261 GVVNAIAAYH 270


>gi|167623615|ref|YP_001673909.1| ribonuclease T [Shewanella halifaxensis HAW-EB4]
 gi|167353637|gb|ABZ76250.1| ribonuclease T [Shewanella halifaxensis HAW-EB4]
          Length = 231

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 72/219 (32%), Gaps = 44/219 (20%)

Query: 1   MTNHF--------------VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVF 43
           MT+ F              V+ D ET G +   D   + A   +++D +    ++ T  F
Sbjct: 1   MTDTFDPNLLKNRFRGYFPVVIDVETAGFNAKTDALLEIAVSMLKMDDEGVLSLDKTLHF 60

Query: 44  FCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYN 97
             +P +    +PEA+  TGI P   LR  V E E    I +           +  II  +
Sbjct: 61  NIEPFEGSNLEPEALAFTGIDPTSPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAH 120

Query: 98  NIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
           N  FD  +      RN       +  +  + +D   +       +               
Sbjct: 121 NAAFDHGFVTQAIERNALK---RTPFHPFATFDTAALAGLAIGHTV-------------- 163

Query: 158 FKLQDLALANGIEHVN--AHDAKADVYATLALVWLIREK 194
             L       GI   N  AH A  D   T  L  LI  +
Sbjct: 164 --LAKACAMAGIAFDNREAHSALYDTERTAELFCLIVNR 200


>gi|72162746|ref|YP_290403.1| exonuclease [Thermobifida fusca YX]
 gi|71916478|gb|AAZ56380.1| exonuclease [Thermobifida fusca YX]
          Length = 313

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 51/193 (26%), Gaps = 30/193 (15%)

Query: 5   FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + D ET G       R  + A VR+      +         P              GI
Sbjct: 31  YAVVDVETTGLRPEGGARVCEIAVVRMRGDGTVLREFTTL-VDPRIKVTGQEF----HGI 85

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                +      AE    +   FS     ++  +N+ F++ +  + F             
Sbjct: 86  AQGDVVGAPRA-AELVAELCALFS---GAVVVGHNLDFENAFLTSEFVPAGLP------- 134

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           +G      L  +R+        +          S  L       G      H A  D  A
Sbjct: 135 DGLPGLCTLRTLRSQ-------VHLERYSLARASHALG------GDWPTGQHTALGDARA 181

Query: 184 TLALVWLIREKKP 196
              L+  +    P
Sbjct: 182 CAQLLAELLHNAP 194


>gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2]
          Length = 459

 Score = 62.9 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++  I GI+
Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPQK---PVGDSENIHGIS 289

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
                   +  A+ +  +  +        I  +N  FD  +    F R    
Sbjct: 290 DDFLKDKPL-YADIADTLFDYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337


>gi|331002829|ref|ZP_08326343.1| hypothetical protein HMPREF0491_01205 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413318|gb|EGG92686.1| hypothetical protein HMPREF0491_01205 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 220

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 21/198 (10%)

Query: 6   VIYDYETFGRDVALDRP-------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           ++ D E  G +    R         +   + +D  +++I S +  + KP  +   +    
Sbjct: 4   IVVDLEMNGIEK-KHRIFGCTMETIEIGAIMLDENYQEISSFKT-YVKPEYNSKIEKNIS 61

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT    +       E  ++   +    +  I  Y   + D            YD  
Sbjct: 62  RLTGITNNMVVNAPK-FNEALKKFSDWCLAADDDIRIYAWSKNDYKQIAKEIRLKRYDI- 119

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    R +   V    +    +        +   S KL  L +A        H A 
Sbjct: 120 ---------RPEESMVYLNEWNDFQEEFDTELGFERQISLKL-ALDMAGIDFLGREHSAL 169

Query: 179 ADVYATLALVWLIREKKP 196
            D   T  L  + R+++ 
Sbjct: 170 DDARNTAKLFHIFRDREM 187


>gi|224029725|gb|ACN33938.1| unknown [Zea mays]
          Length = 457

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 54/188 (28%), Gaps = 26/188 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            V  D ET      +    +F  V V  R+   + S          D LPDP A    GI
Sbjct: 15  IVFLDVETS-TPPCV--LLEFGAVVVCSRRLVDVSSFATLVRPANLDALPDPTA-RSNGI 70

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            + +  ++           G+N + FD     + F        +    
Sbjct: 71  TRGTLADAP-PFRDVADMVYDVL--HGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQ---- 123

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L ++   +               A   KL  LA   G+     H +  DV  
Sbjct: 124 -PKAMIDTLPLLTQCF------------GPRAGDMKLASLANYFGLG-KQRHRSLDDVKM 169

Query: 184 TLALVWLI 191
            + +    
Sbjct: 170 NIDVFKNC 177


>gi|88703768|ref|ZP_01101484.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71]
 gi|88702482|gb|EAQ99585.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71]
          Length = 203

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 17/204 (8%)

Query: 1   MTNHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           + + +++ D ET G                 V +   +I  +  F  +P        EA 
Sbjct: 14  LPDDYIVLDTETTGLPDENGLPDIVTLGITVVRQ--REIAKSVEFKTRPK--KRISEEAQ 69

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GIT ++A         F  +           +I  +N  FD    R+   R    + 
Sbjct: 70  SIHGITNEQAAE----FKSFDSQWSHMAEYLKDQLIVIHNASFDWPILRDHVVR---YNL 122

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                 G           A         + PS D    S  +++L      +    H A+
Sbjct: 123 TTPSIKGVFCSQKAATPWAQAMDLSCSHRGPSVDTLTKSLGVENLRA----KKDGVHGAE 178

Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
            D      ++ ++R  +     + 
Sbjct: 179 IDSQQAAQILEVMRRLEKSNTVWS 202


>gi|270290674|ref|ZP_06196898.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4]
 gi|270280734|gb|EFA26568.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4]
          Length = 178

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 28/187 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET     A       A   V +  +  +     +     +       V + GI
Sbjct: 2   NFVAIDFET--AAPARASACSIALTVV-QNDQITDE---LYSLINPETKFHWRNVQVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        E    +  FF+     ++  +N  FD+   +    R         ++
Sbjct: 56  HEADVQDAP-TFPELWPILQPFFT--PDQLVVAHNANFDNSVLKKTLER---------YE 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  LD +R   +F               + KL  L    GIE  + H+A  D  A
Sbjct: 104 LNRLPYQTLDTLRTSRSFF----------PNYPNHKLNTLCDNLGIELEHHHNALDDSLA 153

Query: 184 TLALVWL 190
              ++  
Sbjct: 154 CANILLY 160


>gi|86149218|ref|ZP_01067450.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596976|ref|ZP_01100212.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562107|ref|YP_002343886.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85840576|gb|EAQ57833.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190665|gb|EAQ94638.1| exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359813|emb|CAL34600.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315928220|gb|EFV07537.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930011|gb|EFV09154.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 253

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  V+     +   V++ +  ++I   + F  K  +          +TGIT
Sbjct: 72  FCIVDIESTGG-VSKGEILEIGAVKI-QNSKEIGRFQSF-VKVKE---IPKNITELTGIT 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            +         A+       F       I   +N+RFD  +         +
Sbjct: 126 YEMVENA-SSLAKVLSDFRLFLKDS---IFVAHNVRFDYSFISKALNECGF 172


>gi|11498577|ref|NP_069805.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus
           DSM 4304]
 gi|2649627|gb|AAB90271.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus
           DSM 4304]
          Length = 205

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 22/187 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D ET G +   D       V +         +     +P        E++   G+ 
Sbjct: 10  FLSIDLETTGLNQKKDEIIAIGAVPIIGTRILAGESYYRLLRPEKFKH---ESMKFHGLD 66

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P +        +E +  +          ++    I  D  + +    R         +  
Sbjct: 67  PARLKTA-HDFSEIAEEVADLLR---GKVLVGYAIELDYGFLKRALKREG-------YKV 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N R D++D  +A+     +               L +LA    +E    H+A AD + T
Sbjct: 116 ENKRIDVIDFEKAVCYILGE--------RPVGEMTLDNLAKKYRVEVSYRHNALADAFIT 167

Query: 185 LALVWLI 191
             +  + 
Sbjct: 168 AQIFQVQ 174


>gi|301782497|ref|XP_002926662.1| PREDICTED: oligoribonuclease, mitochondrial-like [Ailuropoda
           melanoleuca]
 gi|281353930|gb|EFB29514.1| hypothetical protein PANDA_016351 [Ailuropoda melanoleuca]
          Length = 237

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|291614958|ref|YP_003525115.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus
           ES-1]
 gi|291585070|gb|ADE12728.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 235

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 69/214 (32%), Gaps = 31/214 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D       V V      +   + F          D E + + GI+ 
Sbjct: 44  VVVDVETTGLNLITDTLISIGAVAVVNGRIALG--DSFSVVLKQQESSDKENILVHGIS- 100

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A RDGV   E      ++     + +I ++    +    R +            +   
Sbjct: 101 STAQRDGVDPVEALLTFLEYLGK--SRLIAFHVAFDETMIRRAM----------RQYLGL 148

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           + + + LD+   + A +   ++            L D      I     H+A AD  AT 
Sbjct: 149 SFKHEWLDLAYVMPALNRSLMENHRV--------LDDWIGRFNIHIEARHNALADALATA 200

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
            L  +   +           +N N    L D++ 
Sbjct: 201 QLFQIAISQA--------RNKNINDFEGLYDLEK 226


>gi|126165254|ref|NP_001075204.1| oligoribonuclease, mitochondrial precursor [Bos taurus]
 gi|158512836|sp|A2VE52|ORN_BOVIN RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
           exonuclease 2 homolog; AltName: Full=Small fragment
           nuclease; Flags: Precursor
 gi|126010762|gb|AAI33576.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Bos taurus]
 gi|296480277|gb|DAA22392.1| oligoribonuclease, mitochondrial precursor [Bos taurus]
          Length = 237

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|83312383|ref|YP_422647.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82947224|dbj|BAE52088.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 215

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 50/224 (22%), Gaps = 41/224 (18%)

Query: 2   TNHFVIYDYETFGRD-VALDRP-------------AQFAG---VRVDRQWEKIESTEVFF 44
           T+  V  D ET G                       +      VR D  W+  ES +   
Sbjct: 10  TSRIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWKTGESWQ--- 66

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +          ++ + GI+P +         +       F        +  ++   +  
Sbjct: 67  RRLQPGGPISKASIDVHGISPAELKTAP-SFRDVLDDFEAFI---GQDALLAHSAENEME 122

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
           +    + R     +              ++ R  +   P                L  L 
Sbjct: 123 FLNFEYARAGRCGFDEMIFGDGDFVCTQELSRQFFPGVPG--------------SLDVLC 168

Query: 165 LAN---GIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205
                   +    H A  D   T      +     +       +
Sbjct: 169 DRLWVDRSDRFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSF 212


>gi|311263942|ref|XP_003129926.1| PREDICTED: oligoribonuclease, mitochondrial-like [Sus scrofa]
          Length = 237

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|54301691|ref|YP_131684.1| hypothetical protein PBPRB0011 [Photobacterium profundum SS9]
 gi|46915111|emb|CAG21884.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 191

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 50/194 (25%), Gaps = 25/194 (12%)

Query: 3   NHFVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           N  V +D E      GRD       +     +D    +I      + KP  D +      
Sbjct: 9   NRIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEI-SEFCT 67

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI PQ   ++G   AE  R +   F   +     +     DD               
Sbjct: 68  ELTGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAAW---GHDDRILHAECAAKGLKVP 124

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              + N    + L   ++         ++    +                      H   
Sbjct: 125 FTEYINLAMIFRLQRHVKKKRCGQRAAMEIAGLE-----------------WEGRQHSGY 167

Query: 179 ADVYATLALVWLIR 192
            D Y    L   + 
Sbjct: 168 VDAYNLARLTRTLF 181


>gi|317507722|ref|ZP_07965427.1| exonuclease [Segniliparus rugosus ATCC BAA-974]
 gi|316253975|gb|EFV13340.1| exonuclease [Segniliparus rugosus ATCC BAA-974]
          Length = 202

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 54/203 (26%), Gaps = 36/203 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +  +  D E  G     D+  + A +  D     ++         ++D L   +     
Sbjct: 5   KDRLLWIDCEMTGLRPGHDQLIEIAALVTDGDLNILDEGIDLVIHASEDKLAQMDEYVTN 64

Query: 62  -----GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                G+T        +  AE        + + F  P T I+  N+I  D  +       
Sbjct: 65  MHASSGLTDA-VRAATLSLAEAEAKVLAYVKERFPAPRTAILAGNSIATDRSFLAKDMPE 123

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
              D++        S    L        +                         N  E  
Sbjct: 124 --LDAWLHYRMVDVSTIKELSRRWYPRIYF------------------------NQPEKG 157

Query: 173 NAHDAKADVYATLALVWLIREKK 195
            AH A AD+  ++  +   R   
Sbjct: 158 LAHRALADIVESIRELRYYRATA 180


>gi|299771048|ref|YP_003733074.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. DR1]
 gi|298701136|gb|ADI91701.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. DR1]
          Length = 458

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++  I GI+
Sbjct: 233 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPQK---PVGDSENIHGIS 288

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
                   +  AE +  +  +        I  +N  FD  +    F R    
Sbjct: 289 DNFLKDKPL-YAEIADTLFDYLKGAE---IIAHNATFDMNFLDMEFRRAGLP 336


>gi|307565507|ref|ZP_07627990.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345787|gb|EFN91141.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 183

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 29/189 (15%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M N +F+  D+ET           + AG+ V +  + +E+ + +  +P D+       + 
Sbjct: 1   MNNINFIAIDFET--ATAKRSSICE-AGICVVKGGKVVET-KSWLVRPEDNR-YSYWNIQ 55

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GI PQ          +    I  +       ++  +N  FD    R+    +      
Sbjct: 56  IHGIRPQDTAYAP-TFPKVWEEITTYLRDCP--VLVAHNAAFDMSCIRHTLQLHHLPC-- 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D    +RA       G              L  L     I +   H A  
Sbjct: 111 -------PDIDYYCSLRAARHIYDFGCNT-----------LDYLCDHFSISYGTHHRAGD 152

Query: 180 DVYATLALV 188
           D      L 
Sbjct: 153 DAEMCARLF 161


>gi|170727084|ref|YP_001761110.1| ribonuclease T [Shewanella woodyi ATCC 51908]
 gi|169812431|gb|ACA87015.1| ribonuclease T [Shewanella woodyi ATCC 51908]
          Length = 222

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 68/220 (30%), Gaps = 32/220 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D +    ++ T  F  +P +    +PEA+  TG
Sbjct: 22  VVIDVETAGFNAQTDALLEIAVTMLKMDDEGILSLDKTLHFHIEPFEGANLEPEALAFTG 81

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  II  +N  FD  +      R    
Sbjct: 82  IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSQAIERCALK 141

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
                       +   D            +             L       GI   N  A
Sbjct: 142 ------RTPFHPFATFDTAALSGLALGHTV-------------LAKACAIAGIPFDNSEA 182

Query: 175 HDAKADVYATLALVWLIREK--KPKLFEYLYDYRNKNQLR 212
           H A  D   T  L  LI  +      +    D  +K +  
Sbjct: 183 HSALYDTERTAELFCLIVNRWKALGGWPIAIDEESKEEQE 222


>gi|327313911|ref|YP_004329348.1| exonuclease [Prevotella denticola F0289]
 gi|326945021|gb|AEA20906.1| exonuclease [Prevotella denticola F0289]
          Length = 163

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 58/190 (30%), Gaps = 28/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V R  E  ++       P  +Y        + 
Sbjct: 1   MQNFAAIDFET--ANFERSSVCSVGVVIV-RGGEVADTFYSL-VHPEPNY-YQWRCTQVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +      V  ++   RI           +  +N  FD    R  F          +
Sbjct: 56  GLTREDTDDAPV-FSKVWARIEPLIE---GLPLVAHNAPFDKGCLRACFQ---------T 102

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      ++ LD +RA                  ++ +L  ++ A G +    H A AD 
Sbjct: 103 YRMDYPDYEFLDTLRAARRVF----------PRLSNHQLHTVSAACGYDLSRHHHALADA 152

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 153 EACAWIAREI 162


>gi|315924662|ref|ZP_07920879.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621561|gb|EFV01525.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 178

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 59/208 (28%), Gaps = 30/208 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV++D ET   +    R +    + V    +  +           +   D     +T
Sbjct: 1   MTRFVVFDVET--PNRENRRMSAIG-ITVIEDGKITDEFYSL---VNPETYFDYFNTRLT 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI             E  + I    S     ++  +N  FD    +          YR  
Sbjct: 55  GICEDAVWNAP-TFPELWKTIAPMLSSG---LLVAHNAVFDMGVLKR-----CLRDYRIE 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W         + + R I                  S KL  L    GI   + H A +D 
Sbjct: 106 WKPHVRYLCTVQMGRRIIPGM--------------SHKLNVLCDYYGINLAH-HQAASDS 150

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN 209
            A   ++    E    + +Y+  Y   N
Sbjct: 151 RACAQILLRYLEVGADVRQYMRMYSLNN 178


>gi|270295360|ref|ZP_06201561.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274607|gb|EFA20468.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 163

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 52/193 (26%), Gaps = 34/193 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V R  E ++       +P  +Y        + 
Sbjct: 1   MKDFAAIDFET--ANEQRTSVCSVGVVIV-RDGEIVDHYYNLI-RPEPEY-YTYWNTRVH 55

Query: 62  GITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           G+T        +      E + RI           +  +N  FD+   +           
Sbjct: 56  GLTLADTRDAPIFPVVWQEIAPRIE-------GLPLVAHNKAFDESCLKA---------- 98

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                     +    +    Y F            G  +++L  +A   G +    H A 
Sbjct: 99  ---------VFRTYCMDYPDYEFHCTLQTSRRVLKGLPNYQLHTVAACCGYQLEQHHHAL 149

Query: 179 ADVYATLALVWLI 191
           AD  A   +   +
Sbjct: 150 ADAEACAWIAKQV 162


>gi|293190188|ref|ZP_06608684.1| putative DNA polymerase III epsilon subunit [Actinomyces
           odontolyticus F0309]
 gi|292821004|gb|EFF79957.1| putative DNA polymerase III epsilon subunit [Actinomyces
           odontolyticus F0309]
          Length = 250

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 61/200 (30%), Gaps = 24/200 (12%)

Query: 8   YDYETFGRDVALDRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +D ET G     DR    A V               +    +            +A  + 
Sbjct: 11  FDTETTGVRALKDRLVTAALVLRIDGASYRSGVSAPDQVATWLT--DPGVEIPEQATAVH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           GIT ++A RDG    E    +             +   N  +D         R+   S+ 
Sbjct: 69  GITTEQARRDGRPIEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELRRHRLGSFE 128

Query: 120 WSWDN-GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177
              +       D L + R +  F                  L ++A   G     +AH A
Sbjct: 129 ERLEGAPMLIVDPLVLDRKLDRFR------------KGKKTLTEMAPVYGAVASPDAHTA 176

Query: 178 KADVYATLALVWLIREKKPK 197
           + DV  TL ++  + +K P+
Sbjct: 177 EVDVAMTLDVLAGMVDKYPQ 196


>gi|256822949|ref|YP_003146912.1| ribonuclease T [Kangiella koreensis DSM 16069]
 gi|256796488|gb|ACV27144.1| ribonuclease T [Kangiella koreensis DSM 16069]
          Length = 200

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 67/216 (31%), Gaps = 39/216 (18%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----FFCKPADD 50
           M   F     VI D ET G + A D   + A V     + +    E+     F  +P + 
Sbjct: 6   MKERFRGFFPVIIDVETGGFNAATDALLELAAVTT--GFNEQGKLEIKNSYHFNVEPFEG 63

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDY 104
              + +A+  TGI P   LR  + E +  + + +        +  N C++  +N  FD  
Sbjct: 64  ANIEQKALDFTGIDPDNPLRGAISEHKALKSLFKDLRTEQKDAECNRCVLVGHNSWFDLS 123

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
           +      R           N    +   D            +             L    
Sbjct: 124 FLNAASERVDIK------RNPFHPFTSFDTASLSALMLGHTV-------------LAQAC 164

Query: 165 LANGIEHV--NAHDAKADVYATLALVWLIREKKPKL 198
              GIE     AH A  D   T  L  L+  +  + 
Sbjct: 165 DLAGIEFSQKEAHSALYDATKTAELFCLLVNRANQF 200


>gi|194446846|ref|YP_002039036.1| YacC [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|218534571|ref|YP_002401101.1| putative exoribonuclease YacC [Escherichia coli S88]
 gi|194358598|gb|ACF57041.1| YacC [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|218349775|emb|CAQ87168.1| putative exoribonuclease YacC [Escherichia coli S88]
 gi|301130428|gb|ADK62229.1| putative exonuclease protein [Salmonella enterica subsp. enterica
           serovar Kentucky]
 gi|301130557|gb|ADK62357.1| putative exonuclease protein [Salmonella enterica subsp. enterica
           serovar Kentucky]
 gi|315285557|gb|EFU44999.1| exonuclease [Escherichia coli MS 110-3]
 gi|323948908|gb|EGB44804.1| exonuclease [Escherichia coli H252]
          Length = 282

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 24/190 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDASGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +  +++    Y          +   G  S            E   AH A AD   T 
Sbjct: 210 LTVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMTA 260

Query: 186 ALVWLIREKK 195
            +V  I    
Sbjct: 261 GVVNAIAAYH 270


>gi|282164255|ref|YP_003356640.1| hypothetical protein MCP_1585 [Methanocella paludicola SANAE]
 gi|282156569|dbj|BAI61657.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 198

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 55/196 (28%), Gaps = 34/196 (17%)

Query: 2   TNHFVIYDYETFGR------DVAL-DRPAQFAGVRVDRQW--EKIESTEVFFCKPA-DDY 51
                + D ET G       +    D P     V  D     +++   +  +      D 
Sbjct: 1   MTLLCVIDTETTGLGKFDRANPGRVDYPISIGAVVADVNVVKKQVRCVDGMYSLIRIPDT 60

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
               + + I GI P++         +    +   F+      +G  N  FD ++      
Sbjct: 61  SKADDTMLIHGILPEELDSAPAP-TQVCLDLKALFAKYEAMPVGAWNYHFDKHFVDV--- 116

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                              L  + R +          P R      +    +    G+  
Sbjct: 117 -------------------LFRMARMLPPSLVWREMMPERYSRLERYVQNHVTHD-GVLR 156

Query: 172 VNAHDAKADVYATLAL 187
           + AH+A  D   TLA+
Sbjct: 157 LEAHNAFNDCIRTLAV 172


>gi|149020300|ref|ZP_01835192.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930602|gb|EDK81584.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 308

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 50/184 (27%), Gaps = 30/184 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT  F+  D ET   +           V+     ++++S          +       + I
Sbjct: 1   MTYSFIALDVET--ANSFRGSLCSIGLVKF-IDGQEVDSFYTL---INPEEKFSSRNIKI 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I P+  +       E  + I  F    +   I  +N RFD                  
Sbjct: 55  HAIKPEDVIGAP-TFPEVQKEIINFI---DNLPIVAHNARFDA---------YALQDVYL 101

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            ++            +       D            + KL  LA    I   + H+A +D
Sbjct: 102 KYEIPFDNIQYFCSYQVCKIILTDL----------PNHKLHTLAEHFKISLDH-HNALSD 150

Query: 181 VYAT 184
             A 
Sbjct: 151 ARAC 154


>gi|239927654|ref|ZP_04684607.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435992|ref|ZP_06575382.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338887|gb|EFE65843.1| exonuclease RNase T and DNA polymerase III [Streptomyces ghanaensis
           ATCC 14672]
          Length = 204

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 58/195 (29%), Gaps = 16/195 (8%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFI 60
           +      D ET G D       + A +       + +   VF+     D +  DP+A+ I
Sbjct: 10  SPPLAFVDTETTGLDPFQHDAWEIAVILRKPG--ETDQESVFY--LEPDLINADPKALEI 65

Query: 61  TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                ++   +        + +R +++     +  ++  +N  FD     NIF R ++  
Sbjct: 66  NRY-HERVKTEDWTWGKPQDVARDLYRLL---DGTVLIGSNPPFDADMIANIFGRYYWHP 121

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGAT--SFKLQDLALANGIEHVN 173
             W +   +             A         +P         S+ L             
Sbjct: 122 KPWHYRTIDIAILAAGYRHGQAASGAYGGDFLFPDDYPQLPYSSYGLSRAVGVEPPAKDV 181

Query: 174 AHDAKADVYATLALV 188
           AH A  D      + 
Sbjct: 182 AHTALGDARWARDVF 196


>gi|291295679|ref|YP_003507077.1| Exonuclease RNase T and DNA polymerase III [Meiothermus ruber DSM
           1279]
 gi|290470638|gb|ADD28057.1| Exonuclease RNase T and DNA polymerase III [Meiothermus ruber DSM
           1279]
          Length = 200

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 51/193 (26%), Gaps = 15/193 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++   D ET G + + D+      V +     +  +      +P        E +    I
Sbjct: 15  NYWALDLETSGLEPS-DQILSVGMVPIRGGVIEFGAHYYSLVRPVRPQALSVEGIQAHHI 73

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P +        A+    + Q        ++  +    D  + R  +             
Sbjct: 74  LPSELEAAP-PLAQVLDEMEQRI---GQDVLILHFSSIDLSFLRQSYKTLGRPWP----- 124

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   ++  +               GA    L       G+     H A  D  A
Sbjct: 125 -KPLVVDTAVLLARLNERKRWLEPHSQPYPGA----LGAARATFGLPGHLEHHALWDALA 179

Query: 184 TLALVWLIREKKP 196
           T  L  ++R +  
Sbjct: 180 TAELFLVLRHRLQ 192


>gi|260774372|ref|ZP_05883286.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260610499|gb|EEX35704.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 215

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 50/181 (27%), Gaps = 20/181 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET   D         A  ++     +I +++ F  + A     D  +V I  +  Q 
Sbjct: 33  LDCETTSLDPQRAELVSIAATKIID--NRILTSQAFHIRLAAPPSLDSGSVRIHQLRHQD 90

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
               G+ E +  +++  F    N  ++GY+              +  +       +    
Sbjct: 91  LA-YGLSEPQALQQLLAFI--GNRPLVGYHIRYDKTILDIACRKQLGFPLPNPLIEVSQL 147

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
               L+       F                  L  +     +   + HDA  D      +
Sbjct: 148 YHQQLEKQLPNAYF---------------DLSLAAICHHLDLPMQDKHDALQDAITAALV 192

Query: 188 V 188
            
Sbjct: 193 F 193


>gi|330721640|gb|EGG99654.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047]
          Length = 224

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 20/184 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F++ D ET   D           V V     ++   E  F K         ++  I  I 
Sbjct: 41  FLVVDLETTSLDADNGEVVSIGWVPVKSGSIQLADAEHHFSKVDAGV---GQSAVIHHIR 97

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +        A  +  +++F +V    ++ +++   D  +   +  + +          
Sbjct: 98  DSELHDA----ASVTAIMNRFLAVAAGKVLVFHHAELDMAFLNRLSKKLY---------- 143

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 LL  +          +            +L        +     HDA  D  AT
Sbjct: 144 ---SVPLLAPIVDTLQLERRRLLRKESALAPGVLRLHRCRQRYNLPDYPGHDALTDAIAT 200

Query: 185 LALV 188
             L+
Sbjct: 201 AELL 204


>gi|41152197|ref|NP_957038.1| oligoribonuclease, mitochondrial [Danio rerio]
 gi|37590357|gb|AAH59540.1| Small fragment nuclease [Danio rerio]
          Length = 199

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 7/122 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITGI 63
           V  D E  G D+  D+  + A +  D     I           DD L           G 
Sbjct: 10  VWVDLEMTGLDIEKDQIIEMACIVTDSDLNVIAEGPNLIINQPDDLLDGMSDWCKEHHGK 69

Query: 64  T--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           +   Q      +   +       F      P  C +  N++  D  +      +  +  +
Sbjct: 70  SGLTQAVRDSHITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKYMPQFMHHLH 129

Query: 119 RW 120
             
Sbjct: 130 YR 131


>gi|94496850|ref|ZP_01303425.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Sphingomonas sp. SKA58]
 gi|94423863|gb|EAT08889.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Sphingomonas sp. SKA58]
          Length = 312

 Score = 62.9 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 40/140 (28%), Gaps = 12/140 (8%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V  D ET G D   DR  + A    R D     I+       +       D     +TG+
Sbjct: 67  VAVDVETTGLDRETDRIIELAVQRFRFDALGRVIQVGVPRVWREDPGIPIDLRITKLTGL 126

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                    + E      +       +  II  +N  FD  +      R         W 
Sbjct: 127 MADDLAGQVIDETAAVEIL------SSADIIVAHNAAFDRPFID----RRLPAIAGKPWA 176

Query: 124 NGNSRWDLLDVMRAIYAFSP 143
              +  D L++     A + 
Sbjct: 177 CSMAELDWLELGFDGRALAH 196


>gi|149716526|ref|XP_001502237.1| PREDICTED: similar to Oligoribonuclease, mitochondrial precursor
           (Small fragment nuclease) (RNA exonuclease 2 homolog)
           [Equus caballus]
          Length = 237

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|118496683|ref|YP_897733.1| oligoribonuclease [Francisella tularensis subsp. novicida U112]
 gi|194323992|ref|ZP_03057767.1| exonuclease family protein [Francisella tularensis subsp. novicida
           FTE]
 gi|208780043|ref|ZP_03247386.1| exonuclease family protein [Francisella novicida FTG]
 gi|166216259|sp|A0Q414|ORN_FRATN RecName: Full=Oligoribonuclease
 gi|118422589|gb|ABK88979.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella novicida
           U112]
 gi|194321889|gb|EDX19372.1| exonuclease family protein [Francisella tularensis subsp. novicida
           FTE]
 gi|208744047|gb|EDZ90348.1| exonuclease family protein [Francisella novicida FTG]
          Length = 178

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 9/127 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFI 60
           ++ +  D E  G DV   +  + A +  D+    I   E      +D+ L       + +
Sbjct: 5   DNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIHQSDEILNSMNEWCIKV 64

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+T Q+     +      ++I +F        +  +  N+I  D  +      +  
Sbjct: 65  HCETGLT-QRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPKID 123

Query: 115 YDSYRWS 121
              +   
Sbjct: 124 EYCHYRM 130


>gi|304386198|ref|ZP_07368531.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304327555|gb|EFL94782.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 181

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 28/187 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET     A       A   V +  +  +     +     +       V + GI
Sbjct: 5   NFVAIDFET--AAPARASACSIALTVV-QNDQITDE---LYSLINPETKFHWRNVQVHGI 58

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        E    +  FF+     ++  +N  FD+   +    R         ++
Sbjct: 59  HEADVQDAP-TFPELWPILQPFFT--PDQLVVAHNANFDNSVLKKTLER---------YE 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  LD +R   +F               + KL  L    GIE  + H+A  D  A
Sbjct: 107 LNRLPYQTLDTLRTSRSFF----------PNYPNHKLNTLCDNLGIELEHHHNALDDSLA 156

Query: 184 TLALVWL 190
              ++  
Sbjct: 157 CANILLY 163


>gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
 gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
          Length = 459

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++  I GI+
Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPQK---PVGDSENIHGIS 289

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
                   +  A+ +  +  +        I  +N  FD  +    F R    
Sbjct: 290 DDFLKDKPL-YADIADTLFDYLKGAE---IIAHNATFDMNFLDMEFKRVGLP 337


>gi|192360800|ref|YP_001983571.1| oligoribonuclease [Cellvibrio japonicus Ueda107]
 gi|190686965|gb|ACE84643.1| oligoribonuclease [Cellvibrio japonicus Ueda107]
          Length = 185

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFI 60
           N+ +  D E  G D   D   + A +  D     +    VF     D  + + +      
Sbjct: 9   NNLIWIDLEMTGLDPDKDVIIEIATIVTDAHLNILAEGPVFAIHQPDSIMLNMDEWNTNQ 68

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   Q+     V   +       F           I  N+I  D  +      R   
Sbjct: 69  HGKSGLTQRVRDSQVSIEQAEAATIAFLEQWVPKGKSPICGNSICQDRRFLVRGMPRLEN 128

Query: 116 DSYRW 120
             +  
Sbjct: 129 YFHYR 133


>gi|323340217|ref|ZP_08080481.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           ruminis ATCC 25644]
 gi|323092408|gb|EFZ35016.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           ruminis ATCC 25644]
          Length = 180

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 63/207 (30%), Gaps = 29/207 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV +D+ET   +   +     A   V +  + ++     +         D   + I GI
Sbjct: 2   NFVAFDFET--ANAKRNSACSLALTVV-QNNQIVDE---LYSLINPKTNFDYRNIAIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            PQ         +E    I  FF+     ++  +N  FD         +           
Sbjct: 56  KPQMVADSP-DFSELWPHIESFFT--PESLVVAHNAPFDCSVLTRTLEKYGI-------- 104

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                ++++D ++    F                 KL  L     I+  + H+A  D  A
Sbjct: 105 -AAPHFNVIDTVKTSKQFYDFQDN-----------KLDTLCQNLDIDLAHHHNALDDSQA 152

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQ 210
              ++    +         + Y+   +
Sbjct: 153 CAKILLSQLQNFGSDTLKSFIYKYPRK 179


>gi|322515227|ref|ZP_08068225.1| ribonuclease T [Actinobacillus ureae ATCC 25976]
 gi|322118732|gb|EFX90938.1| ribonuclease T [Actinobacillus ureae ATCC 25976]
          Length = 218

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D     + +    F  +P +    +P+++   G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 63  ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E     E  + + +          +I  +N  FD  + +    R    
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKDQGCQRAVIVAHNATFDQAFVQAAVKR---- 136

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +  +    + + D            +   +      SF           +   AH 
Sbjct: 137 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKISF-----------DGKQAHS 183

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 184 ALYDTEKTTELFCAMVNR 201


>gi|94995036|ref|YP_603134.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS10750]
 gi|94548544|gb|ABF38590.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes
           MGAS10750]
          Length = 208

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 18  DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 71  TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167

Query: 181 VYATLALVWLIREKKPK 197
              T A+     E    
Sbjct: 168 ARMTAAIYKSFLETDTN 184


>gi|15675683|ref|NP_269857.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes M1 GAS]
 gi|13622898|gb|AAK34578.1| putative DNA polymerase III epsilon subunit [Streptococcus pyogenes
           M1 GAS]
          Length = 208

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 18  DTYIAFDLE---FNTVNDVSHIIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K   +  VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 71  TGITSDKIAAEPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167

Query: 181 VYATLALVWLIREKKPK 197
              T  +     E    
Sbjct: 168 ARMTAVIYKSFLETDTN 184


>gi|333003546|gb|EGK23086.1| exonuclease family protein [Shigella flexneri VA-6]
 gi|333004693|gb|EGK24216.1| exonuclease family protein [Shigella flexneri K-272]
 gi|333018414|gb|EGK37712.1| exonuclease family protein [Shigella flexneri K-227]
          Length = 220

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSLLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+      P                +Q          ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRLWPGLKYSNMALYKTRKLNVQT------PPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|89098850|ref|ZP_01171731.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911]
 gi|89086526|gb|EAR65646.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911]
          Length = 214

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 54/192 (28%), Gaps = 36/192 (18%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWE-----KIESTEVFFCKPADDYLP--DPEAVFI 60
            D ET G     D   + A +            ++E  E F  +P           A  I
Sbjct: 10  VDVETTGLAPGGDEIIELAFILFSYDGATGEILQVEEKESFLREPLSSRALRNYSSAYRI 69

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +      V   E    +  F +  ++  +  +N  FD  +   +          +
Sbjct: 70  HGIPFEMVRGQ-VFHDE---SVQSFLNKADS--VFAHNASFDRSFMYQM----------Y 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              N    +  +  ++       +              KL  L  A+ I     H A  D
Sbjct: 114 PEVNDLKWYCTMKGVQWKKYGFANS-------------KLATLLSAHNITDHQTHRAMDD 160

Query: 181 VYATLALVWLIR 192
           +   + L+    
Sbjct: 161 ITYLMELMKQQN 172


>gi|229780998|ref|YP_001103540.2| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|291007403|ref|ZP_06565376.1| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338]
          Length = 221

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 47/156 (30%), Gaps = 12/156 (7%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G D+  D   + A +  D     +           D+ L   P+ V 
Sbjct: 1   MNDRLVWIDCEMTGLDLGKDALIEIAALVTDADLNILGEGVDIVIHADDEVLAGMPDVVR 60

Query: 60  -IT---GITPQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFY 111
            +    G+T ++  R  V  AE  +RI  +            +  N+I  D  +      
Sbjct: 61  EMHERSGLT-EEVRRSTVTLAEAEQRILDYIRRHVPDGRSAPLAGNSIATDRGFI--ARD 117

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
               D++        S    L        +     +
Sbjct: 118 MPTLDAHLHYRMVDVSSIKELCRRWFPRIYYAQPEK 153


>gi|15924884|ref|NP_372418.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927468|ref|NP_375001.1| hypothetical protein SA1710 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283564|ref|NP_646652.1| hypothetical protein MW1835 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484135|ref|YP_041359.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486713|ref|YP_043934.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|82751547|ref|YP_417288.1| DNA polymerase III alpha chain [Staphylococcus aureus RF122]
 gi|148268366|ref|YP_001247309.1| exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394428|ref|YP_001317103.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156980210|ref|YP_001442469.1| hypothetical protein SAHV_1879 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253316903|ref|ZP_04840116.1| hypothetical protein SauraC_12304 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253729653|ref|ZP_04863818.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253734998|ref|ZP_04869163.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255006681|ref|ZP_05145282.2| hypothetical protein SauraM_09445 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257426026|ref|ZP_05602448.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428699|ref|ZP_05605094.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431309|ref|ZP_05607685.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434027|ref|ZP_05610378.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436931|ref|ZP_05612973.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793752|ref|ZP_05642731.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781]
 gi|258408894|ref|ZP_05681176.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421002|ref|ZP_05683933.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9719]
 gi|258422971|ref|ZP_05685870.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9635]
 gi|258430026|ref|ZP_05688396.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9299]
 gi|258443456|ref|ZP_05691798.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115]
 gi|258445314|ref|ZP_05693505.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6300]
 gi|258447878|ref|ZP_05696012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6224]
 gi|258453311|ref|ZP_05701296.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A5937]
 gi|269203547|ref|YP_003282816.1| exonuclease [Staphylococcus aureus subsp. aureus ED98]
 gi|282894561|ref|ZP_06302789.1| exonuclease [Staphylococcus aureus A8117]
 gi|282904525|ref|ZP_06312410.1| exonuclease [Staphylococcus aureus subsp. aureus C160]
 gi|282906298|ref|ZP_06314150.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909214|ref|ZP_06317030.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911519|ref|ZP_06319319.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914692|ref|ZP_06322477.1| exonuclease [Staphylococcus aureus subsp. aureus M899]
 gi|282917241|ref|ZP_06324996.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus D139]
 gi|282919729|ref|ZP_06327461.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C427]
 gi|282925133|ref|ZP_06332793.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C101]
 gi|282928067|ref|ZP_06335674.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102]
 gi|283771044|ref|ZP_06343935.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus H19]
 gi|283958655|ref|ZP_06376101.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293507769|ref|ZP_06667611.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510786|ref|ZP_06669488.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus M809]
 gi|293539326|ref|ZP_06672005.1| exonuclease [Staphylococcus aureus subsp. aureus M1015]
 gi|295407274|ref|ZP_06817073.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819]
 gi|295428476|ref|ZP_06821103.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296276903|ref|ZP_06859410.1| exonuclease [Staphylococcus aureus subsp. aureus MR1]
 gi|297208922|ref|ZP_06925326.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297246200|ref|ZP_06930051.1| exonuclease [Staphylococcus aureus A8796]
 gi|297590053|ref|ZP_06948693.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|300913021|ref|ZP_07130459.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70]
 gi|13701687|dbj|BAB42980.1| SA1710 [Staphylococcus aureus subsp. aureus N315]
 gi|14247666|dbj|BAB58056.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21205005|dbj|BAB95700.1| MW1835 [Staphylococcus aureus subsp. aureus MW2]
 gi|49242264|emb|CAG40971.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49245156|emb|CAG43622.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476]
 gi|82657078|emb|CAI81515.1| probable DNA polymerase III alpha chain [Staphylococcus aureus
           RF122]
 gi|147741435|gb|ABQ49733.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946880|gb|ABR52816.1| Exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156722345|dbj|BAF78762.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253726594|gb|EES95323.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253727180|gb|EES95909.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257271169|gb|EEV03326.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274343|gb|EEV05855.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277958|gb|EEV08614.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280953|gb|EEV11097.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257283720|gb|EEV13845.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787724|gb|EEV26064.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781]
 gi|257840341|gb|EEV64803.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842950|gb|EEV67368.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9719]
 gi|257846758|gb|EEV70773.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9635]
 gi|257849620|gb|EEV73588.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A9299]
 gi|257851341|gb|EEV75281.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115]
 gi|257855832|gb|EEV78756.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6300]
 gi|257858810|gb|EEV81679.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A6224]
 gi|257864519|gb|EEV87262.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           A5937]
 gi|262075837|gb|ACY11810.1| exonuclease [Staphylococcus aureus subsp. aureus ED98]
 gi|282313091|gb|EFB43489.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316367|gb|EFB46744.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318868|gb|EFB49223.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus D139]
 gi|282321406|gb|EFB51732.1| exonuclease [Staphylococcus aureus subsp. aureus M899]
 gi|282324528|gb|EFB54840.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326782|gb|EFB57079.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330495|gb|EFB60012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282590131|gb|EFB95212.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102]
 gi|282595081|gb|EFC00048.1| exonuclease [Staphylococcus aureus subsp. aureus C160]
 gi|282763048|gb|EFC03180.1| exonuclease [Staphylococcus aureus A8117]
 gi|283459638|gb|EFC06729.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus H19]
 gi|283471164|emb|CAQ50375.1| exonuclease [Staphylococcus aureus subsp. aureus ST398]
 gi|283789695|gb|EFC28517.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285817574|gb|ADC38061.1| DNA polymerase III polC-type [Staphylococcus aureus 04-02981]
 gi|290919861|gb|EFD96930.1| exonuclease [Staphylococcus aureus subsp. aureus M1015]
 gi|291094832|gb|EFE25100.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466417|gb|EFF08941.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus M809]
 gi|294967849|gb|EFG43879.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819]
 gi|295127458|gb|EFG57097.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296886412|gb|EFH25341.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297176907|gb|EFH36164.1| exonuclease [Staphylococcus aureus A8796]
 gi|297577181|gb|EFH95895.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|298695233|gb|ADI98455.1| probable DNA polymerase III alpha chain [Staphylococcus aureus
           subsp. aureus ED133]
 gi|300885799|gb|EFK81006.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70]
 gi|312437640|gb|ADQ76711.1| exonuclease [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830266|emb|CBX35108.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129297|gb|EFT85291.1| hypothetical protein CGSSa03_08545 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315193423|gb|EFU23820.1| hypothetical protein CGSSa00_04826 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|329724805|gb|EGG61309.1| exonuclease [Staphylococcus aureus subsp. aureus 21172]
 gi|329731424|gb|EGG67787.1| exonuclease [Staphylococcus aureus subsp. aureus 21193]
          Length = 184

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 52/196 (26%), Gaps = 30/196 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + FV  D+ET   +           V+V    +  E+                + + + 
Sbjct: 3   QDAFVALDFET--ANGKRTSICSVGMVKV-IDSQITETFHTL---VNPQDYFSQQNIKVH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+        +      + QF +      +  +N  FD              +   +
Sbjct: 57  GIQPEDVENAPTFDY-VFPYMMQFIAD---LPVVAHNAAFDMNVLHQSIQNIGLPTPNLT 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +                        Q   R   +  + L+ +     ++    HDA  D 
Sbjct: 113 Y--------------------FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDA 152

Query: 182 YATLALVWLIREKKPK 197
            A   + + + +    
Sbjct: 153 KACAMITFRLLKNYEN 168


>gi|149188401|ref|ZP_01866694.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1]
 gi|148837619|gb|EDL54563.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1]
          Length = 197

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 55/186 (29%), Gaps = 23/186 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQW--EKIESTEVFFCKPADDYLPDPEAVFITG 62
           +++ D+ET G D   +       V +   +      + ++F   P +      E   I  
Sbjct: 10  YLVLDFETTGLDANTNTILSLGWVEI-ANFTVNVASAKQLFIESPNE---VKAETAVINH 65

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I P+     G+       ++   F      I+  +    +  +               + 
Sbjct: 66  IMPEMLQD-GISLDSAMTQL---FQAAKNKILIAHGSMIEAAFVDE----------YLTQ 111

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             G S    L VM          +      D     +L +     G+   N H+A  D  
Sbjct: 112 KYGVSD---LPVMWLDTLAIEKSMALAVNKDAEIDVRLSETRKRYGLPEYNGHEALIDAI 168

Query: 183 ATLALV 188
           AT  L 
Sbjct: 169 ATAELF 174


>gi|319892935|ref|YP_004149810.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162631|gb|ADV06174.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464018|gb|ADX76171.1| conserved hypothetical protein [Staphylococcus pseudintermedius
           ED99]
          Length = 186

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 54/202 (26%), Gaps = 30/202 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M N FV  D+ET   +           V+V    E +E+          +       + +
Sbjct: 2   MENSFVALDFET--ANYKRTSICSVGMVKVVAN-EIVETFYTL---VNPNDFFAARNIEV 55

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +         A     + QF        +  +N  FD              +   
Sbjct: 56  HGIQAKDVQHSP-NFAYVYPYMMQFI---GDLPVVAHNAAFDMSVLHASIQAENLITPPM 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           ++                        Q   R   A    L+ +     ++    HDA  D
Sbjct: 112 TY--------------------FCSYQLAKRTVSARRHGLKHMMSHFNLDFHGHHDALND 151

Query: 181 VYATLALVWLIREKKPKLFEYL 202
             A   + + + +  P L   L
Sbjct: 152 AKACAMITYRLLKHYPSLNNVL 173


>gi|71904232|ref|YP_281035.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS6180]
 gi|71803327|gb|AAX72680.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS6180]
          Length = 208

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 18  DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 71  TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167

Query: 181 VYATLALVWLIREKKPK 197
              T A+     E    
Sbjct: 168 ARMTAAIYKSFLETDTN 184


>gi|331245678|ref|XP_003335475.1| hypothetical protein PGTG_17328 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309314465|gb|EFP91056.1| hypothetical protein PGTG_17328 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 200

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            H V  D E  G DV +D+  + A +  D+  ++++    F        L    P     
Sbjct: 13  KHLVWIDCEMTGLDVTVDQIIEIACIITDKDLKELDDGIQFVIHVDQSVLDRMGPWCQNQ 72

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP-----NTCIIGYNNIRFDDYYSRN 108
            G +   +  L+      E  ++I ++  +         ++  N++  D  +   
Sbjct: 73  HGKSGLSEACLQSPHTLTEVDQKIRRYLELHLPGLKGKAVLAGNSVYADKMFLDK 127


>gi|148653458|ref|YP_001280551.1| ribonuclease T [Psychrobacter sp. PRwf-1]
 gi|148572542|gb|ABQ94601.1| RNAse T [Psychrobacter sp. PRwf-1]
          Length = 274

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 66/216 (30%), Gaps = 36/216 (16%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYL 52
           M   F     V+ D ET G + A D   + A   + +D + +            P +   
Sbjct: 53  MVERFRKFLPVVVDVETAGFNAATDALLEIACIPIVMDDEGKFVPGEPLSAHLNPFEGAN 112

Query: 53  PDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFS------VPNTCIIGYNNIRFDDY 104
            +  A+  TGI P   +R  + E E    RRI +             CI+  +N  FD  
Sbjct: 113 LEQRALDFTGIDPNNPMRKAIAEEEQPALRRIFKELKAVRKDNDCLKCILVGHNAHFDLS 172

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
           +      R           N   ++ +LD +          +             L    
Sbjct: 173 FLNAAIERTN-----SKNHNPFHQFSVLDTVTLSALAFGQTV-------------LARAC 214

Query: 165 LANGIEHV--NAHDAKADVYATLALVWLIREKKPKL 198
            A GIE     AH A  D   T  L   I      +
Sbjct: 215 RAAGIEFDGSEAHSALYDTQKTAELFCKILNHYSMM 250


>gi|312882822|ref|ZP_07742555.1| oligoribonuclease [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369514|gb|EFP97033.1| oligoribonuclease [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 181

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 15/130 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
           + + +  D E  G D    +  + A +  DR+   +           EV   K  D    
Sbjct: 5   SQNLIWIDLEMTGLDPEEHKIIEIATIVTDRELNILAEGPVLAIHQPEVELAKMDDWCTN 64

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
              A  +     ++     + E     +   F           I  N++  D  +     
Sbjct: 65  THTASGL----VERVQSSAISEHSAVSQTIDFLEKWVPKGASPICGNSVGQDRRFLYKHM 120

Query: 111 YRNFYDSYRW 120
            +     +  
Sbjct: 121 PKLEEYFHYR 130


>gi|19746791|ref|NP_607927.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS8232]
 gi|209560018|ref|YP_002286490.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes NZ131]
 gi|19749025|gb|AAL98426.1| putative DNA polymerase III epsilon subunit [Streptococcus pyogenes
           MGAS8232]
 gi|209541219|gb|ACI61795.1| Putative DNA polymerase III epsilon subunit [Streptococcus pyogenes
           NZ131]
          Length = 195

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 5   DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 58  TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 113 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 154

Query: 181 VYATLALVWLIREKKPK 197
              T A+     E    
Sbjct: 155 ARMTAAIYKSFLETDTN 171


>gi|302333559|gb|ADL23752.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 184

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 52/196 (26%), Gaps = 30/196 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + FV  D+ET   +           V+V    +  E+                + + + 
Sbjct: 3   QDAFVALDFET--ANGKRTSICSVGMVKV-IDSQITETFHTL---VNPQDYFSQQNIKVH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+        +      + QF +      +  +N  FD              +   +
Sbjct: 57  GIQPEDVENAPTFDY-VFPYMMQFIAD---LPVVAHNAAFDMNVLHQSIQNIGLPTPNLT 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +                        Q   R   +  + L+ +     ++    HDA  D 
Sbjct: 113 Y--------------------FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDA 152

Query: 182 YATLALVWLIREKKPK 197
            A   + + + +    
Sbjct: 153 KACAMITFRLLKNYEN 168


>gi|260779555|ref|ZP_05888445.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604364|gb|EEX30668.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 210

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 48/193 (24%), Gaps = 20/193 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET   D         A  ++            F  +       D  +V I  I 
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIIDNRIITSQP--FEVRLRAPQSLDSNSVKIHQIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                  G+ E +   ++  F    N  ++GY+                 +       + 
Sbjct: 88  HSDLAD-GIDEKQALTQLLAFV--GNRPLVGYHIRYDKKILDLACKRHLGFPLPNPLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+                   +      L+ +     +   + HDA  D  + 
Sbjct: 145 SQIYHDKLEK---------------HLPNAYFDLSLEAICKHLDLPMQSKHDALQDAISA 189

Query: 185 LALVWLIREKKPK 197
             +   + +    
Sbjct: 190 ALVFVRLTKGDLP 202


>gi|91792755|ref|YP_562406.1| ribonuclease T [Shewanella denitrificans OS217]
 gi|123356922|sp|Q12PE3|RNT_SHEDO RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|91714757|gb|ABE54683.1| RNAse T [Shewanella denitrificans OS217]
          Length = 226

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 73/223 (32%), Gaps = 30/223 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   ++++      ++ T  F  +P +    +PEA+   G
Sbjct: 20  VVIDVETAGFNANTDALLEIAVTLLKMNDDGILVLDKTVHFHIEPFEGANLEPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +        S  +  II  +N  FD  +      RN   
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKTVKKGQKASDCHRSIIVAHNAAFDLSFVNKAIERNDLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
               S  +  + +D   +       +                 L       GI+  N  A
Sbjct: 140 ---RSPFHPFASFDTATLAGLSIGHTV----------------LAKACKMAGIDFDNKEA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
           H A  D   T  L   I  +   L  +      ++ +    + 
Sbjct: 181 HSALYDTERTAELFCHIVNRWKALGGWPLATPEQSAIENTDEK 223


>gi|71911395|ref|YP_282945.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS5005]
 gi|71854177|gb|AAZ52200.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS5005]
          Length = 195

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 5   DTYIAFDLE---FNTVNDVSHIIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K   +  VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 58  TGITSDKIAAEPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 113 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 154

Query: 181 VYATLALVWLIREKKPK 197
              T  +     E    
Sbjct: 155 ARMTAVIYKSFLETDTN 171


>gi|290979061|ref|XP_002672253.1| predicted protein [Naegleria gruberi]
 gi|284085828|gb|EFC39509.1| predicted protein [Naegleria gruberi]
          Length = 1200

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 79/255 (30%), Gaps = 20/255 (7%)

Query: 3    NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + ++++D+ET G     D  +  ++  + +          E  +            +  I
Sbjct: 807  DKYILFDFETTGFWTNDDPPKITEYCFLNMATG-------ESIYGLVNPTKSISYHSTKI 859

Query: 61   TGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            TGI         ++E E    I  F S     T +I +N    D    +       +   
Sbjct: 860  TGINLNYVRDKPIIEKE-LDFIIDFISNTKGKTFLIAHNGEILDFKVFKKE-----FYPK 913

Query: 119  RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDA 177
            R S        D L +M++         +      G T+FK + L     + +  + H A
Sbjct: 914  RESKFENIVFVDSLKLMKSHKDLHHKLPK--KESSGRTAFKEEMLIEHFQVGNVADCHCA 971

Query: 178  KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
              DV     ++    +        + ++   + + K     N    +        + S +
Sbjct: 972  FFDVIGLFNILNKFFDDVNTAISNIQEFSKTSNIEKKRKKSNSESKLTKVTGCRCTTSCS 1031

Query: 238  ALIAPVAWHPRYKDS 252
             L      + RY   
Sbjct: 1032 NLKCSCKKNERYCFP 1046


>gi|303256972|ref|ZP_07342986.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|302860463|gb|EFL83540.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
          Length = 260

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 61/195 (31%), Gaps = 27/195 (13%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D ET G      DR  +   V +       ++   +      +   + E + +  IT
Sbjct: 4   ICLDTETTGMAAKEGDRIIEIGCVELGEHGLTDKNFHEY---IDPERQMEAEVIRVHKIT 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +      A+ + +  +F       I   +N +FD  +      +    S       
Sbjct: 61  NEFLVGKPK-FADIADKFIEFVQGARLII---HNAQFDIGFLNEELRKLGKPSMEEIC-G 115

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV----NAHDAKAD 180
            ++  D +++ +A +    +               L  L     I+        H A  D
Sbjct: 116 KDNIIDSMELAKAAFPQMHN--------------SLDALCKRLEIDTTRRVKEGHGALLD 161

Query: 181 VYATLALVWLIREKK 195
                 +  ++++++
Sbjct: 162 AELLGQVYLVLKQQQ 176


>gi|152993185|ref|YP_001358906.1| exonuclease [Sulfurovum sp. NBC37-1]
 gi|151425046|dbj|BAF72549.1| exonuclease [Sulfurovum sp. NBC37-1]
          Length = 263

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 59/206 (28%), Gaps = 17/206 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT      D E+ G D+  DR  Q A ++V  Q +KIE+          D   +   V I
Sbjct: 1   MTPTLYFVDVESTGVDLKNDRLIQLAFLKV--QGDKIEAFNDLCYT---DIEMNDTVVAI 55

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             IT            E    I              +    D     +            
Sbjct: 56  HNITNAMLEDK-YWPYETDAFIELEKGNSPANYFIAHGNELDVAMLEHE----------- 103

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  + D     R +   +              + K + +A   G+ +++AHDA +D
Sbjct: 104 ELILEMQKVDTDKCARLLLKEAGSYKLEDLITRYKLTQKAEAIAKQIGLSNLDAHDALSD 163

Query: 181 VYATLALVWLIREKKPKLFEYLYDYR 206
                 L   + E+     + L    
Sbjct: 164 ALWHYVLFEELLERVEGGIDALVSLT 189


>gi|152970907|ref|YP_001336016.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238895421|ref|YP_002920156.1| exodeoxyribonuclease X [Klebsiella pneumoniae NTUH-K2044]
 gi|150955756|gb|ABR77786.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238547738|dbj|BAH64089.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 219

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 69/263 (26%), Gaps = 54/263 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G         + A V +    +   +      +P  D    P+A+ I  IT +
Sbjct: 4   VIDTETCGL---QGGIVEIASVDI-VDGQIT-NPMSHLVRP--DRPISPQAMAIHRITEE 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E     H       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-EIIPHYH------GSPWYVAHNASFDRRV---------LPEMHGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R ++          S      S KL           ++ H A  D Y T A
Sbjct: 97  --ICTMKLARRLWPGIK-----YSNMGLYKSRKLNVTTP----PGLHHHRALYDCYITAA 145

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246
           L+  I        + + D   +  L                  F   +     +A +A +
Sbjct: 146 LLLDIINVSGWTPDEMADITGRPALLT---------------TFTFGKYRGKAVAEIAEN 190

Query: 247 -PRYKDSVIGCNLSGDMRVFQDL 268
            P Y   +          +   L
Sbjct: 191 DPGYLRWLFNNLDRMSPELRLTL 213


>gi|90409780|ref|ZP_01217797.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK]
 gi|90329133|gb|EAS45390.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK]
          Length = 186

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 50/194 (25%), Gaps = 25/194 (12%)

Query: 3   NHFVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           N  V +D E      GRD       +     +D    +I      + KP  D +      
Sbjct: 4   NRIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEI-SEFCT 62

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI PQ   ++G   AE  R +   F   +     +     DD               
Sbjct: 63  ELTGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAAW---GHDDRILHAECAAKGLKVP 119

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              + N    + L   ++         ++    +                      H   
Sbjct: 120 FTEYINLAMIFRLQRHVKKKRCGQRAAMEIAGLE-----------------WEGRQHSGY 162

Query: 179 ADVYATLALVWLIR 192
            D Y    L   + 
Sbjct: 163 VDAYNLARLTRTLF 176


>gi|315295605|gb|EFU54928.1| exonuclease [Escherichia coli MS 16-3]
          Length = 282

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 24/190 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +  +++    Y          +   G  S            E   AH A AD   T 
Sbjct: 210 LTVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMTA 260

Query: 186 ALVWLIREKK 195
            +V  I    
Sbjct: 261 GVVNAIAAYH 270


>gi|301051375|ref|ZP_07198192.1| exonuclease [Escherichia coli MS 185-1]
 gi|300296987|gb|EFJ53372.1| exonuclease [Escherichia coli MS 185-1]
          Length = 282

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 24/190 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +  +++    Y          +   G  S            E   AH A AD   T 
Sbjct: 210 LTVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMTA 260

Query: 186 ALVWLIREKK 195
            +V  I    
Sbjct: 261 GVVNAIAAYH 270


>gi|294339527|emb|CAZ87886.1| oligoribonuclease [Thiomonas sp. 3As]
          Length = 203

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60
           ++ +  D E  G +   DR  + A V  D Q        V     +D  L   +A     
Sbjct: 17  DNLIWVDMEMTGLNPDTDRIIEVAVVVTDPQLTVRVEGPVLAIHQSDAVLAGMDAWNQNT 76

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +     V EA+ S+ I  F           +  N I  D  +          
Sbjct: 77  HGKSGLTDRVRASTVDEAQASKAIIAFLKKYVPAGKSPMCGNTICQDRRFMARGMPELEA 136

Query: 116 DSYRW 120
             +  
Sbjct: 137 YFHYR 141


>gi|77461407|ref|YP_350914.1| exonuclease [Pseudomonas fluorescens Pf0-1]
 gi|77385410|gb|ABA76923.1| putative DNA poymerase [Pseudomonas fluorescens Pf0-1]
          Length = 235

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 64/193 (33%), Gaps = 23/193 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G +++ DR      V ++     I+ ++ F        L    +V I G+ P
Sbjct: 42  VVLDLETTGLNLSKDRVLSIGAVVIEDGA--IDFSQQFERTLQCHELKLGPSVLIHGLAP 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E    + +F    ++ ++ ++       + +++  R   +         
Sbjct: 100 S-AIAAGSEPTEALVELLEFI--GDSPVLAFHAS-----FDQHMLGRALKEHLGHKLQTV 151

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 +  +    A   +               L +      +E    H A AD  AT 
Sbjct: 152 FLDVAQIAPLVCPQAHIREAG-------------LDEWIDWFKLEVFERHHASADALATA 198

Query: 186 ALVWLIREKKPKL 198
            L  ++  +  + 
Sbjct: 199 ELALILFSRARQQ 211


>gi|9507445|ref|NP_052452.1| hypothetical protein ColIb-P9_p006 [Plasmid ColIb-P9]
 gi|194447291|ref|YP_002043847.1| YacC [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL476]
 gi|300820024|ref|ZP_07100202.1| exonuclease [Escherichia coli MS 107-1]
 gi|4512442|dbj|BAA75091.1| yacC [Plasmid ColIb-P9]
 gi|70610197|gb|AAZ05344.1| YacC [Salmonella enterica]
 gi|194405595|gb|ACF65816.1| YacC [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL476]
 gi|300527391|gb|EFK48453.1| exonuclease [Escherichia coli MS 107-1]
 gi|321271367|gb|ADW79457.1| hypothetical protein YacC [Escherichia coli]
 gi|323133063|gb|ADX20491.1| YacC protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323959251|gb|EGB54915.1| exonuclease [Escherichia coli H489]
 gi|325495902|gb|EGC93762.1| hypothetical protein ECD227_4199 [Escherichia fergusonii ECD227]
 gi|330907847|gb|EGH36370.1| yacC [Escherichia coli AA86]
          Length = 282

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 24/190 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +  +++    Y          +   G  S            E   AH A AD   T 
Sbjct: 210 LTVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMTA 260

Query: 186 ALVWLIREKK 195
            +V  I    
Sbjct: 261 GVVNAIAAYH 270


>gi|297690291|ref|XP_002822553.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 2 [Pongo
           abelii]
          Length = 222

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 10/121 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDS------ 92

Query: 61  TGITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
             ++       G   E EF   + Q  + P  C +  N++  D  +      +     + 
Sbjct: 93  --MSDWCKEHHGKQAEYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHY 149

Query: 120 W 120
            
Sbjct: 150 R 150


>gi|119478307|ref|ZP_01618338.1| ribonuclease T [marine gamma proteobacterium HTCC2143]
 gi|119448647|gb|EAW29892.1| ribonuclease T [marine gamma proteobacterium HTCC2143]
          Length = 235

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 62/211 (29%), Gaps = 26/211 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   D   + A   + ++ +    I+ T  F   P +    +P A+  TG
Sbjct: 35  VVIDVETGGFDCQTDAILEIAASTLTMNDEGIICIDKTFSFNVAPFEGANLEPAALEFTG 94

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R+   E      +                ++  +N  FD  +      R    
Sbjct: 95  IDPYHPFREADPEEVVFTDLLNAIRKQVKVHDCTRAVLVGHNAHFDHGFVMAAVERCQIK 154

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    + + D            +   +      SF            +  AH 
Sbjct: 155 ------RNPFHPFSVFDTATLAGLAFGQTVLAKACQTAGISF-----------NNAEAHS 197

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRN 207
           A  D   T  L  LI  K   L  +  +  +
Sbjct: 198 AAYDTGKTAELFCLIVNKWKDLGGWNIENDS 228


>gi|15607062|ref|NP_214444.1| hypothetical protein aq_2108 [Aquifex aeolicus VF5]
 gi|2984321|gb|AAC07843.1| putative protein [Aquifex aeolicus VF5]
          Length = 210

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 29/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV++D E    DV   +      V V +   +I+ ++ F+     D +   +A  I GIT
Sbjct: 37  FVVFDCEATELDVKKAKLLSIGAVEV-KNL-EIDLSKSFYEILKSDEI---KAAEIHGIT 91

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   + G    E      ++     + ++GY          +       Y    +    
Sbjct: 92  REDVEKYGKEPKEVIYDFLKYIK--GSVLVGYYVKFDVSLVEKYSIKYFQYPIINYK--- 146

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                DL   ++  Y                +   L DL    G+E    H+A  D Y T
Sbjct: 147 ----LDLFSFVKREY---------------QSGRSLDDLMKELGVEIRARHNALEDAYIT 187

Query: 185 LALVWLIREKKPKL 198
             L         + 
Sbjct: 188 ALLFLKYVYPNREY 201


>gi|296135421|ref|YP_003642663.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
           K12]
 gi|295795543|gb|ADG30333.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
           K12]
          Length = 203

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60
           ++ +  D E  G +   DR  + A V  D Q        V     +D  L   +A     
Sbjct: 17  DNLIWVDMEMTGLNPDTDRIIEVAVVVTDPQLTVRVEGPVLAIHQSDAVLAGMDAWNQNT 76

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +     V EA+ S+ I  F           +  N I  D  +          
Sbjct: 77  HGKSGLTDRVRTSTVDEAQASKAIIAFLKKYVPAGKSPMCGNTICQDRRFMARGMPELET 136

Query: 116 DSYRW 120
             +  
Sbjct: 137 YFHYR 141


>gi|262279776|ref|ZP_06057561.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
 gi|262260127|gb|EEY78860.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
          Length = 458

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 6   VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I D ET G      DR  +   + +    +   S+   +  P     P  ++  I GI+
Sbjct: 233 LILDTETTGFYFQDGDRIIEVGAIEM-INRKLTGSSIHIYINPQK---PVGDSENIHGIS 288

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
                   +  A+ +  +  +        I  +N  FD  +    F R    
Sbjct: 289 DNFLKDKPL-YADIADTLFDYLKGAE---IIAHNATFDMNFLDMEFRRAGLP 336


>gi|71083046|ref|YP_265765.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762529|ref|ZP_01264494.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062159|gb|AAZ21162.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718331|gb|EAS84981.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
          Length = 223

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 62/211 (29%), Gaps = 31/211 (14%)

Query: 1   MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M    VI D ET G  V    R  +   + ++     I +   F C    +     +A+ 
Sbjct: 1   MKE--VILDTETTGLSVRDGHRIVEIGCIELE---NLIPTKNRFHCYLNPERKVSEKALE 55

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + G T +          +F   + +F        +  +N  FD  +  N           
Sbjct: 56  VHGYTDEFL----STHKKFGDIVDEFLVFIENKRLVIHNAEFDLSHLNNE-----LSLLG 106

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDA 177
               N  +  D L + R  +  SP                L  L     I++     H A
Sbjct: 107 KEKLNSENVVDTLALARDKFPGSP--------------ISLDALCKRYRIDNSKRTQHTA 152

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNK 208
             D      +   + ++K     +  +   K
Sbjct: 153 LIDCDLLAKVYINLLDQKEPTLNFKNEDNEK 183


>gi|57652115|ref|YP_186779.1| exonuclease [Staphylococcus aureus subsp. aureus COL]
 gi|87160447|ref|YP_494527.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195792|ref|YP_500602.1| hypothetical protein SAOUHSC_02110 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222044|ref|YP_001332866.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510116|ref|YP_001575775.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141184|ref|ZP_03565677.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258451040|ref|ZP_05699076.1| exonuclease [Staphylococcus aureus A5948]
 gi|262049938|ref|ZP_06022798.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30]
 gi|262053185|ref|ZP_06025343.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3]
 gi|282923233|ref|ZP_06330914.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765]
 gi|284024940|ref|ZP_06379338.1| exonuclease [Staphylococcus aureus subsp. aureus 132]
 gi|294849443|ref|ZP_06790185.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754]
 gi|304379080|ref|ZP_07361827.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57286301|gb|AAW38395.1| exonuclease [Staphylococcus aureus subsp. aureus COL]
 gi|87126421|gb|ABD20935.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87203350|gb|ABD31160.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374844|dbj|BAF68104.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368925|gb|ABX29896.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257861282|gb|EEV84094.1| exonuclease [Staphylococcus aureus A5948]
 gi|259158912|gb|EEW43998.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3]
 gi|259161946|gb|EEW46528.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30]
 gi|282593144|gb|EFB98143.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765]
 gi|294823580|gb|EFG40007.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754]
 gi|302751766|gb|ADL65943.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304342315|gb|EFM08207.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196235|gb|EFU26590.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139726|gb|EFW31595.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142357|gb|EFW34171.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314570|gb|AEB88983.1| Exonuclease [Staphylococcus aureus subsp. aureus T0131]
 gi|329728665|gb|EGG65095.1| exonuclease [Staphylococcus aureus subsp. aureus 21189]
          Length = 184

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 52/196 (26%), Gaps = 30/196 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + FV  D+ET   +           V+V    +  E+                + + I 
Sbjct: 3   QDAFVALDFET--ANGKRTSICSVGMVKV-IDSQITETFHTL---VNPQDYFSQQNIKIH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+        +      + QF +      +  +N  FD              +   +
Sbjct: 57  GIQPEDVENAPTFDY-VFPYMMQFIAD---LPVVAHNAAFDMNVLHQSIQNIGLPTPNLT 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +                        Q   R   +  + L+ +     ++    HDA  D 
Sbjct: 113 Y--------------------FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDA 152

Query: 182 YATLALVWLIREKKPK 197
            A   + + + +    
Sbjct: 153 KACAMITFRLLKNYEN 168


>gi|167752075|ref|ZP_02424202.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216]
 gi|167660316|gb|EDS04446.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216]
          Length = 164

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 53/190 (27%), Gaps = 27/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   +           VRV    +  E       +P  DY        I 
Sbjct: 1   MKDFVAIDFET--ANRERTSICSVGLVRV-ENGDIREKIY-RLIRPYPDY-YSSWNTRIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +          E    I    +      +  +N  FD+   +  F +         
Sbjct: 56  GLTYRDTAHA-APFPEVWADISPELA---GLPLVAHNSPFDEGCLKAAFRQYGM------ 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +      RA                   + +LQ +A   G +  + H A AD 
Sbjct: 106 ---AYPDYRFFCTCRASRRVF---------GRELPNHQLQTVAARCGFDLRDHHHALADA 153

Query: 182 YATLALVWLI 191
            A   +  LI
Sbjct: 154 EACAWIARLI 163


>gi|291234393|ref|XP_002737131.1| PREDICTED: Three prime repair exonuclease 2-like [Saccoglossus
           kowalevskii]
          Length = 598

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 72/213 (33%), Gaps = 20/213 (9%)

Query: 3   NHFVIYDYETFGR---DVALDRPAQFA-------GVRVDRQWEKIESTEVFFCKPADDYL 52
           N FV  D ET      +  L +  + A        +  +     ++   V    P D  +
Sbjct: 153 NSFVFMDLETTTLIQYNKPLPKITEIALVAVSREALMTEGDIRIVDK-LVMCVDPLDQIV 211

Query: 53  PDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRN 108
           P   A  +TG++ +          +      + QFF    P  C+I +N  +FD    R+
Sbjct: 212 PI--ASQMTGLSNESLQLHNKQTFDVNVMVALRQFFKRQIPPICMIAHNGNKFDFPILRD 269

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
              R          D   +  ++ D          +    P R  G  + K        G
Sbjct: 270 ELLRVRGQLDILCGDTLQAFIEIRD--EEERTAFSNYYSSPMRQKGDLTLKSLH-QKYLG 326

Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201
            + ++AH A++D  A + +V        + F+ 
Sbjct: 327 SQFLSAHCAESDAIALMKIVQKQHHTLLRWFDR 359


>gi|297269235|ref|XP_002799845.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 2 [Macaca
           mulatta]
          Length = 222

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 10/121 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDS------ 92

Query: 61  TGITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
             ++       G   E EF   + Q  + P  C +  N++  D  +      +     + 
Sbjct: 93  --MSDWCKEHHGKQAEYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHY 149

Query: 120 W 120
            
Sbjct: 150 R 150


>gi|194447077|ref|YP_002039046.1| YacC [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|194358521|gb|ACF56965.1| YacC [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
          Length = 282

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 49/190 (25%), Gaps = 24/190 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +    +       
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSDPADWLEE---- 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                +   M     +     ++     G  S            E   AH A AD   T 
Sbjct: 210 ---LTVYCAMELAAGYYGATYRY-----GTISLACAASQAGLTWE-GQAHSAIADARMTA 260

Query: 186 ALVWLIREKK 195
            +V  I    
Sbjct: 261 GVVNAIAAYH 270


>gi|121997034|ref|YP_001001821.1| oligoribonuclease [Halorhodospira halophila SL1]
 gi|166216263|sp|A1WTK7|ORN_HALHL RecName: Full=Oligoribonuclease
 gi|121588439|gb|ABM61019.1| Exonuclease, RNase T and DNA polymerase III [Halorhodospira
           halophila SL1]
          Length = 183

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFIT 61
           + +  D E  G D + DR  + A V  D   + +    V         L   +       
Sbjct: 7   NLIWIDLEMTGLDPSRDRIIEIAVVVTDSNLDTLAEGPVLAIHQDRSLLDSMDEWNTRQH 66

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +   ++     V EAE   ++  F        T  +  N+I  D  +           
Sbjct: 67  GRSGLTERVRASTVTEAEAEAQVLAFLKQYVPARTSPMCGNSICQDRRFLARWMPDLEAY 126

Query: 117 SYRWS 121
            +   
Sbjct: 127 FHYRH 131


>gi|120603536|ref|YP_967936.1| exonuclease, RNase T and DNA polymerase III [Desulfovibrio vulgaris
           DP4]
 gi|120563765|gb|ABM29509.1| Exonuclease, RNase T and DNA polymerase III [Desulfovibrio vulgaris
           DP4]
          Length = 251

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 5/118 (4%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV+ D E  G     D     AGV +  +         F  K      P+ +A+ + G+
Sbjct: 47  TFVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGR--CFEAKMRPHLPPEEDAIAVHGL 104

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            P +        AE       F         G++      +              R +
Sbjct: 105 LPDETATHDDP-AESLAAFRTFCGEAVPT--GWHVGLDAAFLDAAAQRHGVRPWPRRT 159


>gi|116051228|ref|YP_789941.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296388274|ref|ZP_06877749.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1]
 gi|115586449|gb|ABJ12464.1| putative nuclease [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 208

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 50/181 (27%), Gaps = 20/181 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET   D           V V R    +      + +P      D E++ I  +    
Sbjct: 35  LDLETTSLDPRRADVLSIGAVLVRRGKLVMGERLELYVEPPPSL--DAESIRIHKLRRAD 92

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                 +E +  R++  F    +  ++GY         +R+   R  +D    +     S
Sbjct: 93  LEGQLQLE-QALRQLLAFI--GDRPLLGYYLSFDVAVLNRH--LRQLFDRQLHNPSIEIS 147

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
                 V R                D     +   LA A  +     H A  D  A   +
Sbjct: 148 SLYHRKVSR-------------HFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALM 194

Query: 188 V 188
            
Sbjct: 195 F 195


>gi|205352416|ref|YP_002226217.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856601|ref|YP_002243252.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205272197|emb|CAR37055.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206708404|emb|CAR32708.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627468|gb|EGE33811.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 232

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +            +   + +N            F R         W    
Sbjct: 57  MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       S              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLSRRL------WPGIKYSNMSLYKSRKLSVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
              LI   +   +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     +    +   L  
Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215


>gi|217972890|ref|YP_002357641.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS223]
 gi|217498025|gb|ACK46218.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS223]
          Length = 228

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 20/188 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D E  G +   D+      V ++R    +   E    +         ++  I GI 
Sbjct: 42  LVAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLVQIRGSV---GQSATIHGIL 98

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               ++   +E E       F +     ++  +    D  + +            +    
Sbjct: 99  DNHLVQAVTIE-EAMGW---FINQTYGRVLVAHYAPLDCRFLQQDLLA------IYHQAL 148

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R         I+         S +L       G+    AH A  D  A 
Sbjct: 149 ILPAIDTLMLERHRLLREHSVIK-------EGSLRLGACRERYGLPIYTAHSALTDALAC 201

Query: 185 LALVWLIR 192
             L+    
Sbjct: 202 GELLLAQM 209


>gi|5817183|emb|CAB53690.1| hypothetical protein [Homo sapiens]
 gi|49065426|emb|CAG38531.1| DKFZP566E144 [Homo sapiens]
 gi|117646830|emb|CAL37530.1| hypothetical protein [synthetic construct]
 gi|208965440|dbj|BAG72734.1| REX2, RNA exonuclease 2 homolog [synthetic construct]
          Length = 237

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGRSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|71901523|ref|ZP_00683608.1| Ribonuclease T [Xylella fastidiosa Ann-1]
 gi|71728710|gb|EAO30856.1| Ribonuclease T [Xylella fastidiosa Ann-1]
          Length = 210

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 31/207 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52
           M+  F     V+ D ET G +       + A + +  D                PA    
Sbjct: 13  MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTD 72

Query: 53  PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYS 106
            DP+++ +TGI        A  + +        +            I+  +N  FD  + 
Sbjct: 73  IDPKSLEVTGIILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFL 132

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R  Y    +   +      L  +       +                     A  
Sbjct: 133 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQ-----------------AAG 175

Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
                 +AH A  D   T  L   I  
Sbjct: 176 LDWNAADAHSAVYDAEKTAHLFCTITN 202


>gi|328675229|gb|AEB27904.1| Oligoribonuclease [Francisella cf. novicida 3523]
          Length = 178

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           ++ +  D E  G DV   R  + A +  D+    I   E       D+ L   +   +  
Sbjct: 5   DNLIWIDLEMTGLDVDNCRIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLATMNEWCIKT 64

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+T Q+     +      ++I +F        +  +  N+I  D  +     Y   
Sbjct: 65  HAETGLT-QRVKASTISTEAAEQQILEFIREFVPYQSSPLCGNSIWQDRRFL--AKYMPK 121

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
            D Y        +   LL+                + DD   S
Sbjct: 122 IDDYCHYRMLDVTTLKLLNQYWGDSKGFDKKNTHKALDDIRES 164


>gi|320087113|emb|CBY96881.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 235

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 43/182 (23%), Gaps = 35/182 (19%)

Query: 3   NHFVIYDYETFGR-------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
            + VI D ET G        ++++        +                           
Sbjct: 63  KNIVIVDTETTGLGREAEIIEISIIDCT--GAIL-------------LNTLIKPSKDIPA 107

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           EA  I GIT +          E   ++ +  S      + YN         +    R   
Sbjct: 108 EATEIHGITDEMVEDAP-SWKEMLPQVLELISHG---WVAYNAKFDARMLEQASGSRVDP 163

Query: 116 D---------SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
           D              ++    +       + +   +     WP   D      L D  L 
Sbjct: 164 DYFGVPECAMQLYAEYNGEWDKKRRKYKWKKLTDAATSLDAWPEEIDENPHRALYDCYLT 223

Query: 167 NG 168
            G
Sbjct: 224 LG 225


>gi|292488519|ref|YP_003531403.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430]
 gi|292899700|ref|YP_003539069.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946]
 gi|291199548|emb|CBJ46665.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946]
 gi|291553950|emb|CBA20995.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430]
          Length = 221

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 52/190 (27%), Gaps = 38/190 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G         + A V V    + +            D     +A+ +  IT
Sbjct: 2   FRVIDTETCGL---QGGVVEVASVDV-INGQIVNPMSDLIS---PDRPISRQAIAVHKIT 54

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    +E +   R H       +     +N  FD         R         W  
Sbjct: 55  EAMVRGKPTIE-QAIGRYH------GSPFYVAHNASFD---------RRMLPEMHGEW-- 96

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  + + R +         WP       S +       +    ++AH A  D Y T
Sbjct: 97  ----ICTMTLARRL---------WPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVT 143

Query: 185 LALVWLIREK 194
            AL+  I   
Sbjct: 144 AALLIRIMSF 153


>gi|114640399|ref|XP_001150488.1| PREDICTED: similar to CGI-114 protein isoform 1 [Pan troglodytes]
          Length = 222

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 10/121 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDS------ 92

Query: 61  TGITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
             ++       G   E EF   + Q  + P  C +  N++  D  +      +     + 
Sbjct: 93  --MSDWCKEHHGKQAEYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHY 149

Query: 120 W 120
            
Sbjct: 150 R 150


>gi|15838737|ref|NP_299425.1| ribonuclease T [Xylella fastidiosa 9a5c]
 gi|24638168|sp|Q9PBJ8|RNT_XYLFA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|9107281|gb|AAF84945.1|AE004029_5 ribonuclease T [Xylella fastidiosa 9a5c]
          Length = 211

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 31/207 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52
           M+  F     V+ D ET G +       + A + +  D                PA    
Sbjct: 14  MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTD 73

Query: 53  PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYS 106
            DP+++ +TGI        A  + +        +            I+  +N  FD  + 
Sbjct: 74  IDPKSLEVTGIILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFL 133

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R  Y    +   +      L  +       +                     A  
Sbjct: 134 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQ-----------------AAG 176

Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
                 +AH A  D   T  L   I  
Sbjct: 177 LDWNAADAHSAVYDAEKTAHLFCTITN 203


>gi|158335553|ref|YP_001516725.1| exonuclease [Acaryochloris marina MBIC11017]
 gi|158305794|gb|ABW27411.1| exonuclease [Acaryochloris marina MBIC11017]
          Length = 168

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 31/191 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   D   D       +RV+   + ++ +      P   +       +I GI
Sbjct: 9   NFVAIDFET--ADYQRDSACAIGVIRVEND-QIVDRSHFLIRPPRQKFQF----TYIHGI 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           AE    +   F+   +  +  +N  FD             D     + 
Sbjct: 62  TWSDVKHHP-TFAELWPNLQPKFA--GSDFVAAHNANFDRSVLNACCQAAELDPMPLPF- 117

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   + + R ++   P               KL ++     I     H A +D  A
Sbjct: 118 -----LCTVKLAREVWNIRPT--------------KLPNVCEFLDIPL-QHHQALSDAEA 157

Query: 184 TLALVWLIREK 194
              +V   R++
Sbjct: 158 CAKIVIAARQQ 168


>gi|149922094|ref|ZP_01910534.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Plesiocystis pacifica SIR-1]
 gi|149817031|gb|EDM76513.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Plesiocystis pacifica SIR-1]
          Length = 213

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 37/149 (24%), Gaps = 6/149 (4%)

Query: 5   FVIYDYETF----GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +++ D E      G     +    +   V VD Q    +     F +P       P    
Sbjct: 6   YLVIDLEATCDDAGAVPRREMEIIEIGAVLVDGQTLCPKREFQRFVRPLRHRTLTPFCRQ 65

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T IT  +         E    +  F           +   +D          +      
Sbjct: 66  LTSITQAEVDGA-ATFPEVIAELRAFMYDDGGRPRFCSWGAYDRGQFEQDARFHGVALPF 124

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQW 148
               N  + +  +   R  Y  +    + 
Sbjct: 125 TDHLNLKAGFSRVLGTRKRYGMAGALRRL 153


>gi|119946941|ref|YP_944621.1| oligoribonuclease [Psychromonas ingrahamii 37]
 gi|119865545|gb|ABM05022.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas
           ingrahamii 37]
          Length = 179

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 33/126 (26%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+ V  D E  G +   D+  + A +  D     +     F    ++  L   D     
Sbjct: 3   KNNLVWIDLEMTGLNPDTDKIIEIATIVTDSDLNILAQGPEFVIHQSNQALDAMDEWCTT 62

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +     +  A   +    F           +  N+I  D  +         
Sbjct: 63  QHGKSGLTDRVKASQISCANAEQATLDFLKEWVPAGAAPLCGNSIGQDRRFLVRQMPALE 122

Query: 115 YDSYRW 120
              +  
Sbjct: 123 AYFHYR 128


>gi|114776398|ref|ZP_01451443.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
           PV-1]
 gi|114553228|gb|EAU55626.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
           PV-1]
          Length = 310

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 51/190 (26%), Gaps = 33/190 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ D ET G D   D   +   V            E    +                +TG
Sbjct: 40  LVIDTETTGLDTTADTIIELGFVAFSYDAGSGRIYEVLHNYDGFEDPGAPLSDVVKQLTG 99

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+        + +AE    I  +    +  ++  +N  FD                    
Sbjct: 100 ISDAMVAGQRLDDAE----IETWLKKAD--LLIAHNAAFDRPM----------------- 136

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  +    + A   ++          +G  S KL  +A   G      H A  D  
Sbjct: 137 ------LERRLPLAAEKNWACTFCDINWDAEGIASRKLDYIACRLGYFFDG-HRAVVDAQ 189

Query: 183 ATLALVWLIR 192
           ATL L+    
Sbjct: 190 ATLHLLTRAM 199


>gi|312172662|emb|CBX80918.1| exodeoxyribonuclease X [Erwinia amylovora ATCC BAA-2158]
          Length = 221

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 52/190 (27%), Gaps = 38/190 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G         + A V V    + +            D     +A+ +  IT
Sbjct: 2   FRVIDTETCGL---QGGVVEVASVDV-INGQIVNPMSDLIS---PDRPISRQAIAVHKIT 54

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    +E +   R H       +     +N  FD         R         W  
Sbjct: 55  EAMVRGKPTIE-QAIGRYH------GSPFYVAHNASFD---------RRMLPEMHGEW-- 96

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  + + R +         WP       S +       +    ++AH A  D Y T
Sbjct: 97  ----ICTMTLARRL---------WPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVT 143

Query: 185 LALVWLIREK 194
            AL+  I   
Sbjct: 144 AALLIRIMSF 153


>gi|304411957|ref|ZP_07393568.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS183]
 gi|307303275|ref|ZP_07583030.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           BA175]
 gi|304349817|gb|EFM14224.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS183]
 gi|306913635|gb|EFN44057.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           BA175]
          Length = 228

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 51/188 (27%), Gaps = 20/188 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D E  G +   D+      V ++     +   E    +         ++  I GI 
Sbjct: 42  LVAMDLEMTGLNPQQDQILSIGLVPIEHGEIPLARAEQKLVQIRGSV---GQSATIHGIL 98

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               ++   +E E       F +     ++  ++   D  + +            +    
Sbjct: 99  DNHLVQAVTIE-EAMGW---FINQTYGRVLVAHHAPLDCRFLQQDLLA------IYHQAL 148

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R         I+         S +L       G+    AH A  D  A 
Sbjct: 149 VLPAIDTLMLERHRLLREQSVIK-------EGSLRLGACRERYGLPIYTAHSALTDALAC 201

Query: 185 LALVWLIR 192
             L+    
Sbjct: 202 GELLLAQM 209


>gi|117621105|ref|YP_856588.1| DNA polymerase III subunit epsilon [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562512|gb|ABK39460.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 208

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 51/196 (26%), Gaps = 20/196 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET   D A         VR+               +          +V I G+  
Sbjct: 32  VALDFETTSLDPAQAEIVAIGAVRIQGNRVLTGEALSIRVQAPASL--SEHSVVIHGLRH 89

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q     G+      R +  F       ++GY+        +            +   +  
Sbjct: 90  QDLQ-QGMTLEAALRLLLAFI--GPRELVGYHIAYDLRILNLACQRCWGLTLAQRGIEVS 146

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D L               +    D A    L  ++   G+  + AHDA +D     
Sbjct: 147 RLYHDHL---------------YRRYPDAAIDLHLAAISSHIGLPTLPAHDALSDAITAA 191

Query: 186 ALVWLIREKKPKLFEY 201
            +   +    P  +  
Sbjct: 192 LIFLRLTRGGPLAYPK 207


>gi|57242277|ref|ZP_00370216.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis RM3195]
 gi|57016957|gb|EAL53739.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis RM3195]
          Length = 260

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 66/213 (30%), Gaps = 31/213 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  +   +  +   V++ +  ++++  E F  K  +          +TGI 
Sbjct: 72  FCIVDIESTGG-INSGQILEIGAVKI-QNHKELDRFESF-VKVDE---IPLNITKLTGIE 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         +R +  F    N  +   +N++FD  +     Y   +         
Sbjct: 126 LNMVKDAPN----LTRVLEAFRLFLNDSVFVAHNVKFDYNFISKSLYECGFGILLN---- 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +   +D  +                  ++ +KL  L     IE    H A  D  A 
Sbjct: 178 --RKICTVDFAQCC--------------IQSSHYKLDTLKEILKIE-SIHHRALNDALAA 220

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
             +      K P   +   +  +  +  KL + 
Sbjct: 221 AEIFKYCLSKLPPHIKTTEELIHFTKTAKLKNK 253


>gi|15843331|ref|NP_338368.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           CDC1551]
 gi|148824916|ref|YP_001289670.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis F11]
 gi|218755494|ref|ZP_03534290.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis GM
           1503]
 gi|254366256|ref|ZP_04982300.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254552821|ref|ZP_05143268.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289763891|ref|ZP_06523269.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis GM 1503]
 gi|306778600|ref|ZP_07416937.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu002]
 gi|306786623|ref|ZP_07424945.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu003]
 gi|306790989|ref|ZP_07429311.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu004]
 gi|306791307|ref|ZP_07429609.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu005]
 gi|306795373|ref|ZP_07433675.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu006]
 gi|306801344|ref|ZP_07438012.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu008]
 gi|306805555|ref|ZP_07442223.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu007]
 gi|306969951|ref|ZP_07482612.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu009]
 gi|13883693|gb|AAK48182.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|134151768|gb|EBA43813.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148723443|gb|ABR08068.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           F11]
 gi|289711397|gb|EFD75413.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis GM 1503]
 gi|308328330|gb|EFP17181.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu002]
 gi|308328734|gb|EFP17585.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu003]
 gi|308332576|gb|EFP21427.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu004]
 gi|308340068|gb|EFP28919.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu005]
 gi|308344057|gb|EFP32908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu006]
 gi|308347855|gb|EFP36706.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu007]
 gi|308351843|gb|EFP40694.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu008]
 gi|308352508|gb|EFP41359.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu009]
 gi|323717575|gb|EGB26777.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           CDC1551A]
          Length = 329

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 28/182 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD  +          +         +
Sbjct: 73  MLDGQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R +     +              +L+ LA   G+     HDA  DV     
Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDVRVLTG 169

Query: 187 LV 188
           ++
Sbjct: 170 IL 171


>gi|254233206|ref|ZP_04926532.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis C]
 gi|124602999|gb|EAY61274.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
           tuberculosis C]
          Length = 329

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 28/182 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD  +          +         +
Sbjct: 73  MLDGQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R +     +              +L+ LA   G+     HDA  DV     
Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDVRVLTG 169

Query: 187 LV 188
           ++
Sbjct: 170 IL 171


>gi|15610847|ref|NP_218228.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           H37Rv]
 gi|148663576|ref|YP_001285099.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           H37Ra]
 gi|167970866|ref|ZP_02553143.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
           H37Ra]
 gi|306778068|ref|ZP_07416405.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu001]
 gi|306974185|ref|ZP_07486846.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu010]
 gi|307081893|ref|ZP_07491063.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu011]
 gi|307086506|ref|ZP_07495619.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu012]
 gi|2960135|emb|CAA18033.1| PROBABLE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium
           tuberculosis H37Rv]
 gi|148507728|gb|ABQ75537.1| DNA polymerase III subunit epsilon DnaQ [Mycobacterium tuberculosis
           H37Ra]
 gi|308213597|gb|EFO72996.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu001]
 gi|308356458|gb|EFP45309.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu010]
 gi|308360405|gb|EFP49256.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu011]
 gi|308364101|gb|EFP52952.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           SUMu012]
          Length = 329

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 28/182 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD  +          +         +
Sbjct: 73  MLDGQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R +     +              +L+ LA   G+     HDA  DV     
Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDVRVLTG 169

Query: 187 LV 188
           ++
Sbjct: 170 IL 171


>gi|323439142|gb|EGA96870.1| DNA polymerase III alpha chain [Staphylococcus aureus O11]
 gi|323441573|gb|EGA99223.1| DNA polymerase III alpha chain [Staphylococcus aureus O46]
          Length = 157

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 48/185 (25%), Gaps = 30/185 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + FV  D+ET   +           V+V    +  E+                + + + 
Sbjct: 3   QDAFVALDFET--ANGKRTSICSVGMVKV-IDSQITETFHTL---VNPQDYFSQQNIKVH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+        +      + QF +      +  +N  FD              +   +
Sbjct: 57  GIQPEDVENAPTFDY-VFPYMMQFIAD---LPVVAHNAAFDMNVLHQSIQNIGLPTPNLT 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +                        Q   R   +  + L+ +     ++    HDA  D 
Sbjct: 113 Y--------------------FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDA 152

Query: 182 YATLA 186
            A   
Sbjct: 153 KACAM 157


>gi|331685967|ref|ZP_08386544.1| exonuclease superfamily [Escherichia coli H299]
 gi|331076920|gb|EGI48141.1| exonuclease superfamily [Escherichia coli H299]
          Length = 282

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 26/191 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N+        +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNSRFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
            + +  +++    Y             +   +  L   A   G      AH A AD    
Sbjct: 210 MTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGQAHSAIADARMA 259

Query: 185 LALVWLIREKK 195
             +V  I    
Sbjct: 260 AGVVNAIAAYH 270


>gi|114562633|ref|YP_750146.1| ribonuclease T [Shewanella frigidimarina NCIMB 400]
 gi|122300177|sp|Q084K7|RNT_SHEFN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|114333926|gb|ABI71308.1| RNAse T [Shewanella frigidimarina NCIMB 400]
          Length = 221

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   ++++     + + T  F  +P +    +P A+   G
Sbjct: 20  VVIDVETAGFNANTDALLEIAVSLLKMNSDGVIVLDRTLHFNIEPFEGANLEPAALAFNG 79

Query: 63  ITPQK----ALRDGVVEAEFSRRI--HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P      A+ + V   E  + +   Q  +  +  II  +N  FD  +      RN   
Sbjct: 80  IDPTNPLRGAVDEKVAFLEIFKEVKKAQKAADCHRSIIVAHNAAFDLGFVNKAIERNGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
               S  +  + +D   +       +                 L       GI+  N  A
Sbjct: 140 ---RSPFHPFASFDTATLAGLAIGHTV----------------LAKACKMAGIDFDNKEA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L  LI  +
Sbjct: 181 HSALYDTERTAELFCLIVNR 200


>gi|115351259|ref|YP_773098.1| exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
 gi|115281247|gb|ABI86764.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
          Length = 276

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 40/211 (18%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQ------WEKIESTEVFFCKPADDYLPDPEAVFI 60
           I D ET G   A D P     + V+ +       ++I                 P+A  +
Sbjct: 24  IIDTETTGV-AAHDEPISIGILLVEIEPGSGVLVQEIGRYHGLR---EPCVPIHPKAQAV 79

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G+T        +  A  +  I++        ++  +N +FD                  
Sbjct: 80  HGMTAADLSGKVLDLAWITSLINE------ADVLIAHNAQFDARM--------------- 118

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     ++    +  ++     Q+P         KL  +    G+     HDA  D
Sbjct: 119 --------LAVVCDAGSAKSWRCSLQQFPWPA-AVGRKKLDSVCEFYGVVKQLRHDALGD 169

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
             A LA++ +   K  +   YL     K  +
Sbjct: 170 CQALLAVLLIHTGKTTRSRTYLALLLAKAPV 200


>gi|119775228|ref|YP_927968.1| ribonuclease T [Shewanella amazonensis SB2B]
 gi|119767728|gb|ABM00299.1| RNAse T [Shewanella amazonensis SB2B]
          Length = 258

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A     +D      ++ T  F  +P +    +P A+   G
Sbjct: 40  VVIDVETAGFNAQTDALLEIAVTLLTMDDNGMLALDKTLHFHIEPFEGANLEPAALAFNG 99

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +        +  +  +I  +N  FD  +      R+   
Sbjct: 100 IDPSNPLRGAVSEKEAMLEIFKAVRKGMKAADCHRAVIVAHNAAFDHGFVTKAIDRSGVK 159

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
                  +    +   D            +             L       GI   N  A
Sbjct: 160 ------RSPFHPFATFDTACLSGLALGHTV-------------LAQACKIAGIPFDNKEA 200

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 201 HSALYDTERTAELFCYIVNR 220


>gi|83648050|ref|YP_436485.1| oligoribonuclease [Hahella chejuensis KCTC 2396]
 gi|123531236|sp|Q2SBB4|ORN_HAHCH RecName: Full=Oligoribonuclease
 gi|83636093|gb|ABC32060.1| Oligoribonuclease (3'->5' exoribonuclease) [Hahella chejuensis KCTC
           2396]
          Length = 182

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 37/129 (28%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
           ++ +  D E  G D   DR  + A V      E +           +       D     
Sbjct: 5   DNLIWIDLEMTGLDPDSDRIIEMAVVVTTSNLELVAEGPVIAVHQPDSVLALMDDWNRNT 64

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +TG    +     + EA+  ++I  F +         +  N+I  D  +      
Sbjct: 65  HGASGLTG----RVKGSTIGEADAEKQILDFLAQHVDAGCSPMCGNSIGQDRRFLARYMK 120

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 121 DLEKFFHYR 129


>gi|282877400|ref|ZP_06286223.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           buccalis ATCC 35310]
 gi|281300452|gb|EFA92798.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           buccalis ATCC 35310]
          Length = 194

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 26/186 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             F   D+ET   +           V V    +  +S      +P  +Y   P  + + G
Sbjct: 31  KDFAAIDFET--ANSCRSSVCSVGVVIV-ENGKITDSYYHLI-RPYPNY-YHPRNIAVHG 85

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I P           E   +I           +  +N  FD+        +  + +Y  ++
Sbjct: 86  ILPSDTQDAP-TFPEVWAQIAPLIKH---LPLVAHNKAFDE-----SCLKACFATYGMAY 136

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N      L+   R                    + +L  +A   G   VN H A AD  
Sbjct: 137 LNYPFYCTLIASRRVFCHH------------ELANHQLHTVAAHLGYNLVNHHHALADAE 184

Query: 183 ATLALV 188
           A   + 
Sbjct: 185 ACSVIA 190


>gi|332993984|gb|AEF04039.1| ribonuclease T [Alteromonas sp. SN2]
          Length = 218

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 30/210 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   V+++       + T  +   P +    +P A+   G
Sbjct: 18  VVIDVETAGFNAGTDALLEIAAVTVKMEEDGLIYPDQTFHYHVDPFEGANLEPAALEFNG 77

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P  ALR  + E+E  + + +        +     +I  +N  FD  +      R    
Sbjct: 78  IDPHCALRGAIEESEAMKSLCKGIRKAQKDADCQRSVIVAHNATFDQSFVNAAIARC--- 134

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
           + + +  +    +D   +                         L     A GIE     A
Sbjct: 135 NIKRTPFHPFVSFDTTSLA----------------GLTLGQTVLVKACRAAGIEFDQKEA 178

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYD 204
           H A  D   T  L   +  +   L  +   
Sbjct: 179 HSALYDAQKTTELFCFMVNRYKALGGWPLA 208


>gi|296110637|ref|YP_003621018.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
 gi|295832168|gb|ADG40049.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
          Length = 177

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 28/200 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +         A   V    + ++           +         + G+
Sbjct: 2   NFIAMDFET--ANHEKHSAVSIAIAVVRHN-QVVDKFYSL---IKPETYFSARNTAVHGL 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      E  + I   F      ++  +N  FD+   +        +       
Sbjct: 56  KESDVAQAPK-FPEVWKIIAPLFKEDK--LVVAHNAAFDNSILKGTLAYYGIEE------ 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + LLD +R      PD            + KL  +A   GI   + H+A  D  A
Sbjct: 107 ---PHYMLLDTVRTSRKLLPD----------FKNHKLNTVAENFGITLDHHHNALDDAVA 153

Query: 184 TLALVWLIREKKPKLFEYLY 203
              ++    +         +
Sbjct: 154 AANILIYEADHFGVDNLKSF 173


>gi|90416474|ref|ZP_01224405.1| oligoribonuclease [marine gamma proteobacterium HTCC2207]
 gi|90331673|gb|EAS46901.1| oligoribonuclease [marine gamma proteobacterium HTCC2207]
          Length = 188

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + +  D E  G     DR  + A V  D+    +    +     +D+ +   D       
Sbjct: 14  NLIWIDLEMTGLSPERDRIIEIATVVTDKDLNVLAEGPMIAVHQSDELIDGMDEWNTRQH 73

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +   ++  +  V EAE      +F        +  +  N+I  D  +  N        
Sbjct: 74  GGSGLTERVRQSLVTEAEAELATIEFLRQWVPAGSSPMCGNSICQDRRFLANYMTDLQRF 133

Query: 117 SYRW 120
            +  
Sbjct: 134 FHYR 137


>gi|30063256|ref|NP_837427.1| exodeoxyribonuclease X [Shigella flexneri 2a str. 2457T]
 gi|56479974|ref|NP_707706.2| exodeoxyribonuclease X [Shigella flexneri 2a str. 301]
 gi|30041508|gb|AAP17236.1| hypothetical protein S1920 [Shigella flexneri 2a str. 2457T]
 gi|56383525|gb|AAN43413.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|281601259|gb|ADA74243.1| Exodeoxyribonuclease 10 [Shigella flexneri 2002017]
 gi|313650662|gb|EFS15064.1| exonuclease family protein [Shigella flexneri 2a str. 2457T]
 gi|332757646|gb|EGJ87979.1| exonuclease family protein [Shigella flexneri 2747-71]
 gi|332758031|gb|EGJ88357.1| exonuclease family protein [Shigella flexneri K-671]
 gi|332766817|gb|EGJ97018.1| exonuclease family protein [Shigella flexneri 2930-71]
 gi|333018617|gb|EGK37911.1| exonuclease family protein [Shigella flexneri K-304]
          Length = 220

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 72/265 (27%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSLLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R ++          S      + KL ++    G+ H   H A  D Y T  
Sbjct: 97  --ICTMKLARRLWPGLK-----YSNMALYKTRKL-NVQTPLGLHH---HRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
           +P Y   +     S    +   L  
Sbjct: 191 YPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|262041960|ref|ZP_06015142.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040658|gb|EEW41747.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 219

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 69/263 (26%), Gaps = 54/263 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G         + A V +    +   +      +P  D    P+A+ I  IT +
Sbjct: 4   VIDTETCGL---QGGIVEIASVDI-VDGQIT-NPMSHLVRP--DRPISPQAMAIHRITEE 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E     H       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-EIIPHYH------GSRWYVAHNASFDRRV---------LPEMHGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R ++          S      S KL           ++ H A  D Y T A
Sbjct: 97  --ICTMKLARRLWPGIK-----YSNMGLYKSRKLNVTTP----PGLHHHRALYDCYITAA 145

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246
           L+  I        + + D   +  L                  F   +     +A +A +
Sbjct: 146 LLLDIINVSGWTPDEMADITGRPALLT---------------TFTFGKYRGKAVAEIAEN 190

Query: 247 -PRYKDSVIGCNLSGDMRVFQDL 268
            P Y   +          +   L
Sbjct: 191 DPGYLRWLFNNLDRMSPELRLTL 213


>gi|53803894|ref|YP_114507.1| ribonuclease T [Methylococcus capsulatus str. Bath]
 gi|53757655|gb|AAU91946.1| ribonuclease T [Methylococcus capsulatus str. Bath]
          Length = 209

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 53/199 (26%), Gaps = 28/199 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD----RQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           V+ D ET G D   +   + A V +D         +  T     KP +    D  A+   
Sbjct: 18  VVVDVETSGFDPHANALLEIAAVHLDMDESGNLHPV-RTHQLHVKPFEGAKLDEAALNFN 76

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            I P    R  V E E   +I                I+  +N  FD  +      R   
Sbjct: 77  KINPFHPFRFAVDEREALSQIFDAVQQSIRQHGCTRAILVGHNPAFDIAFLNAASSR--- 133

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                   N    +   D            +   +             A     +H  AH
Sbjct: 134 ---ARIKKNPFHPFSTFDTATLGGLAYGQTVLARAAQ-----------AAGLSWDHQEAH 179

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  +
Sbjct: 180 SAAYDANQTARLFCTIVNR 198


>gi|241889971|ref|ZP_04777269.1| ATP-dependent helicase DinG homolog [Gemella haemolysans ATCC
           10379]
 gi|241863593|gb|EER67977.1| ATP-dependent helicase DinG homolog [Gemella haemolysans ATCC
           10379]
          Length = 616

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 95/304 (31%), Gaps = 40/304 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F + D E            QF+  ++D  + +I S   ++ +P            +
Sbjct: 1   MNKLFCVVDIELT----DDKEIIQFSATKLDENFREILSIN-YYIQPKKQV--STFVTEL 53

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI+ +          + +  ++ +       I+  + +  D    +             
Sbjct: 54  TGISNEMLHDKP-FFEDVAHELYNYIK---GDILVCHGLPSDYVILK------------- 96

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKA 179
                  R+  + ++                    TS++L DL+ + G+   +  H+A  
Sbjct: 97  ------KRFHDVGILYKAKLSLDTVELSRLFLPSQTSYRLSDLSNSLGLYTGDQYHNAAI 150

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           DV  T+ L+  I  K  K      +  N  ++  L++  +++        F  +R+ +  
Sbjct: 151 DVKVTVKLLKEIARKISK-----INTDNYKKIENLLEKIDLSMYKF--ARFCRNRAKS-- 201

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
           +   +        V    +  D R   D D   L   +       K  +   +     + 
Sbjct: 202 VEFNSDEFINYQGVDFRKVVYDNRKTCDNDKFILFSSIDEDDYVSKFKITDFVILKKKSS 261

Query: 300 CPIL 303
              L
Sbjct: 262 YIPL 265


>gi|291383854|ref|XP_002708465.1| PREDICTED: small fragment nuclease [Oryctolagus cuniculus]
          Length = 237

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 99  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 158

Query: 114 FYDSYRW 120
               +  
Sbjct: 159 MKHLHYR 165


>gi|212702995|ref|ZP_03311123.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098]
 gi|212673583|gb|EEB34066.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098]
          Length = 173

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 48/192 (25%), Gaps = 31/192 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT  +V  D+ET G   A          R+       +S       P+   L       +
Sbjct: 2   MTGRYVALDFETSG--YAAHSACAVGLCRI-EDGAVTDSFYSLIRPPSSRVLF----THV 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G+T            E   ++  F     +  I  +N  FD                  
Sbjct: 55  HGLTWPLLKDAP-TFTEVWPQLAAFME--GSRAILAHNAGFDRRVLHASCQALGL----- 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                  +   L  ++              R     S  L  +    GI   + H   +D
Sbjct: 107 ----VQPQLPFLCTLKGAR-----------RSLPLASRALDSVCDYFGIPLDHHHAG-SD 150

Query: 181 VYATLALVWLIR 192
             A   +   + 
Sbjct: 151 ARACAEIYLRLH 162


>gi|149192489|ref|ZP_01870676.1| oligoribonuclease [Vibrio shilonii AK1]
 gi|148833680|gb|EDL50730.1| oligoribonuclease [Vibrio shilonii AK1]
          Length = 181

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
           ++ +  D E  G D    +  + A +  D +   +          ++    K  D     
Sbjct: 6   DNLIWVDLEMTGLDPEQHKIIEIASIVTDSELNILAEGPVIAIHQSDEELAKMDDWCTNT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +      +       EAE  ++   F           I  N+I  D  +      
Sbjct: 66  HTASGL----VARVKDSEYDEAEAIKQTITFLEQWVPKGKSPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 122 ELEEYFHYR 130


>gi|254786953|ref|YP_003074382.1| ribonuclease T [Teredinibacter turnerae T7901]
 gi|237685615|gb|ACR12879.1| ribonuclease T [Teredinibacter turnerae T7901]
          Length = 211

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 66/198 (33%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G + A D   + A V +   D  + + + T  F  +P +    +  A+  TG
Sbjct: 21  VIIDVETGGFNAATDALLEIAAVTLHMDDNGFLQRDETFSFHVEPFEGANIEKAALEFTG 80

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I  +   R+ V EA     I             N  ++  +N  FD  +      R+   
Sbjct: 81  IDLESEDREAVPEAIALGDIFAGVRKAVKGYGCNRAVLVGHNAHFDLNFLNAAAARSDIK 140

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    +   D            +        ATS KL  L  +N      AH 
Sbjct: 141 ------RNPFHPFSCFDTATLCGLIFGHTV-------LATSCKLAGLEFSNR----EAHS 183

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L  L+  K
Sbjct: 184 AAYDAEKTADLFCLMVNK 201


>gi|328865534|gb|EGG13920.1| hypothetical protein DFA_11681 [Dictyostelium fasciculatum]
          Length = 383

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 15/117 (12%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            + +D ET G   +   +  + + + +          + F+ K       +  A    G+
Sbjct: 81  ILFFDTETTGLATSTTSQIIELSLINIKDG-------DSFYRKVNPTIPIEDGATKKHGM 133

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           T Q        E +    + QF         P   II  +N +FD +       +N 
Sbjct: 134 TNQSLAGHPYWE-DVEPELIQFLDKYCVGDTPVEIIIVAHNEKFDRHILATRIVKNM 189


>gi|325858421|ref|ZP_08172583.1| exonuclease [Prevotella denticola CRIS 18C-A]
 gi|325483059|gb|EGC86047.1| exonuclease [Prevotella denticola CRIS 18C-A]
          Length = 178

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 59/190 (31%), Gaps = 28/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V R  E  ++       P  +Y        + 
Sbjct: 16  MQNFAAIDFET--ANFERSSVCSVGVVIV-RGGEVADTFYSL-VHPEPNY-YQWRCTQVH 70

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T +      V  ++   RI           +  +N  FD    R  F          +
Sbjct: 71  GLTREDTDGAPV-FSKVWARIEPLIE---GLPLVAHNAPFDKGCLRACFQ---------T 117

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      ++ LD +RA     P            ++ +L  ++ A G +    H A AD 
Sbjct: 118 YRMDYPDYEFLDTLRAARRVFPHL----------SNHQLHTVSAACGYDLSRHHHALADA 167

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 168 EACAWIAREI 177


>gi|290475494|ref|YP_003468382.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Xenorhabdus bovienii SS-2004]
 gi|289174815|emb|CBJ81616.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Xenorhabdus bovienii SS-2004]
          Length = 208

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 59/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D +   +   T  F   P +    DP A+  TG
Sbjct: 12  VVIDVETGGFNAQTDALLEIAAITLKMDEEGWLMPADTLHFHIDPFEGANLDPAALAFTG 71

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E      I +           N  II  +N  FD  +      R+   
Sbjct: 72  IDPTNPLRGAVSEYTALHAIFKMIRKGMKDNNCNRAIIVAHNASFDHNFVMAAAERSGLK 131

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                    +      +   AH 
Sbjct: 132 RNPFHPFATFDTAALSGLVLGQTILAKAC-----------------ITAEIPFDSNQAHS 174

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 175 ALYDTDRTALLFCELVNR 192


>gi|238793401|ref|ZP_04637027.1| Oligoribonuclease [Yersinia intermedia ATCC 29909]
 gi|238727370|gb|EEQ18898.1| Oligoribonuclease [Yersinia intermedia ATCC 29909]
          Length = 181

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V     +D+   L D   V 
Sbjct: 5   QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVR 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++       +++   +  +F           I  N++  D  +        
Sbjct: 65  THTGSGL-VERVKASPFSDSDAELQTIEFLKQWVPAGASPICGNSVGQDRRFLFRYMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EAYFHYR 130


>gi|25027941|ref|NP_737995.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|259506334|ref|ZP_05749236.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|23493224|dbj|BAC18195.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|259166114|gb|EEW50668.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 227

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 50/184 (27%), Gaps = 18/184 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D ET G      +      V V  +  ++        +  + +     AV I  +T
Sbjct: 45  LLAVDVETTGLKPDEHQIVSIGWVPVTGRVIELGGAGYRVIRGTEGFTVGSSAV-IHRLT 103

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +    GV   +    +          ++  +    +  +      + F    +     
Sbjct: 104 DDELA-AGVDLEDALVELLAALK---GRVLLAHFAPMEQNFLSAACLKYFDAPLQ----- 154

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D              +P  +D     +L  +    G+   + H A  D  A 
Sbjct: 155 ----LPVVDTFAIERRHMEKMSTYPRGED----LRLARVRTRYGLPQYSNHQALTDALAC 206

Query: 185 LALV 188
             L 
Sbjct: 207 AELY 210


>gi|218296944|ref|ZP_03497630.1| ATP-dependent DNA helicase, RecQ family [Thermus aquaticus Y51MC23]
 gi|218242647|gb|EED09183.1| ATP-dependent DNA helicase, RecQ family [Thermus aquaticus Y51MC23]
          Length = 1684

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 61/194 (31%), Gaps = 22/194 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D E    D       + A    D Q              + D     EA  IT I 
Sbjct: 7   FVALDLEATSPDPEEAEILELAAQ--DSQGRTFHRYLATNKPLSKD----HEAFRITQIP 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++  R+ V      R    F       ++G+N +R+D             +        
Sbjct: 61  FEEYEREKVPPERALREFLDFL--GGRSLLGHNLLRYDLPLLERALGEVGLN-------L 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-GIEHVNAHDAKADVYA 183
               +  LD +R  +        +P   DG   ++L DL       E   AH A  DV A
Sbjct: 112 PPEAYRALDTLRLAHLV------FPIPKDGLAGYRLGDLYHYLTQEELEGAHRAATDVGA 165

Query: 184 TLALVWLIREKKPK 197
           T  ++  + + +  
Sbjct: 166 TWRILEALSQVQIP 179


>gi|154507795|ref|ZP_02043437.1| hypothetical protein ACTODO_00277 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797429|gb|EDN79849.1| hypothetical protein ACTODO_00277 [Actinomyces odontolyticus ATCC
           17982]
          Length = 250

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 61/201 (30%), Gaps = 26/201 (12%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEK-------IESTEVFFCKPADDYLPDPEAVFI 60
           +D ET G     DR      + +              +    +            +A  +
Sbjct: 11  FDTETTGVRALKDRLVT-GALVLRIDGASYRSGVSAPDQVATWLT--DPGVEIPEQATAV 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            GIT ++A RDG    E    +             +   N  +D         R+   S+
Sbjct: 68  HGITTEQARRDGRPIEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELRRHRLGSF 127

Query: 119 RWSWDN-GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHD 176
               +       D L + R +  F                  L ++A   G     +AH 
Sbjct: 128 EERLEGAPMLIVDPLVLDRKLDRFR------------KGKKTLTEMAPVYGAVASPDAHT 175

Query: 177 AKADVYATLALVWLIREKKPK 197
           A+ DV  TL ++  + +K P+
Sbjct: 176 AEVDVAMTLDVLAGMVDKYPQ 196


>gi|308048230|ref|YP_003911796.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
 gi|307630420|gb|ADN74722.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
          Length = 181

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + +  D E  G D   +   + A +  D +   +    V      +  L   D   V   
Sbjct: 7   NLIWIDLEMTGLDPEQNTIIEIATIVTDSELNVLAEGPVLAVHQPESELAKMDEWNVRTH 66

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +   ++     V  AE  R+   F +         I  N++  D  +           
Sbjct: 67  GNSGLTERVRASKVDMAEAERQTLAFLAEWVPAGASPICGNSVGQDRRFLVKYMPALEAY 126

Query: 117 SYRWS 121
            +  +
Sbjct: 127 FHYRT 131


>gi|254583524|ref|XP_002497330.1| ZYRO0F03036p [Zygosaccharomyces rouxii]
 gi|238940223|emb|CAR28397.1| ZYRO0F03036p [Zygosaccharomyces rouxii]
          Length = 251

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 9/127 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFC------KPADDYLP 53
              V  D E  G D   DR  +   +  D     +++     V  C      +     + 
Sbjct: 38  KPLVWVDCEMTGLDHNSDRIIEICCIITDGHLSVVDNNCYESVIHCDKSILDQMGPWCVE 97

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
              +  +T            VE E  + I ++   P T ++  N+I  D  +    F R 
Sbjct: 98  HHGSSGLTQKVLDSDKTREQVEEELLQFIRKYVPEPRTGVLSGNSIHMDRLFMLKDFPRV 157

Query: 114 FYDSYRW 120
               +  
Sbjct: 158 LEHLHYR 164


>gi|332290039|ref|YP_004420891.1| oligoribonuclease [Gallibacterium anatis UMN179]
 gi|330432935|gb|AEC17994.1| oligoribonuclease [Gallibacterium anatis UMN179]
          Length = 182

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   DR  + A +  D+    +    V   K  D  L   +     
Sbjct: 5   KQNLIWIDLEMTGLDPNKDRIIEIATIVTDKNLNILAEGPVLAIKQDDKILAGMNEWCQK 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
                   ++  +  + E     +   F           I  N++  D  +  N      
Sbjct: 65  THSANGLIERVRQSKLTERAAELQTLDFLKKWVPKGVSPICGNSVAQDKRFIFNYMPDLA 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 DYFHYR 130


>gi|153001188|ref|YP_001366869.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS185]
 gi|151365806|gb|ABS08806.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS185]
          Length = 228

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 52/188 (27%), Gaps = 20/188 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D E  G +   D+      V ++R    +   E    +         ++  I GI 
Sbjct: 42  LVAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLVQIRGSV---GQSATIHGIL 98

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               ++   +EA        F +     ++  ++   D  + +            +    
Sbjct: 99  DNHLVQAVTIEAAMGW----FINQTYGRVLVAHHAPLDCRFLQQDLLA------IYHQAL 148

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + R         I+         S +L       G+    AH A  D  A 
Sbjct: 149 ILPAIDTLMLERHRLLREHSVIK-------EGSLRLGACRERYGLPIYTAHSALTDALAC 201

Query: 185 LALVWLIR 192
             L+    
Sbjct: 202 GELLLAQM 209


>gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47]
 gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage
           phi2958PVL]
 gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 132]
 gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47]
 gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL]
 gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 306

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 60/205 (29%), Gaps = 30/205 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET   +         A ++      +    +  +     +         I GI+
Sbjct: 3   FVAIDVET--ANEQRSSICSIALLKFQDNKMR----DAIYTHINPETYFSSINTSIHGIS 56

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  +    +  +    I +F       II  +N  FD Y   + F +         +  
Sbjct: 57  EEDVMDSPKM-YQMHEAIIRFLDNH---IIVAHNTSFDMYALCDSFKKYNLPLPSNQY-- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                 +         S++LQDLA    I++   H+A  D    
Sbjct: 111 ------------------FCTYRLSKDLYNLPSYRLQDLAEHFDIKNEEYHNAFYDAKVC 152

Query: 185 LALVWLIREKKPKLFEYLYDYRNKN 209
             + + I + +      L + +N  
Sbjct: 153 AKIAYNILKDQDANLNDLVENQNFK 177


>gi|256827957|ref|YP_003156685.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577133|gb|ACU88269.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium
           baculatum DSM 4028]
          Length = 177

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 49/183 (26%), Gaps = 29/183 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D+ET   D   D        +V +  E ++        P       P  V + GI 
Sbjct: 7   YVAIDFET--ADSCRDSACAVGLTKV-QGGEIVDRLYGLIRPPR--SRFSPFCVNVHGIH 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       EF      F        +  +N  FD              +    +  
Sbjct: 62  WSDVKDAPA-FREFWIENAGFLE--GADFLAAHNASFDRSVLGACCTMAGLPAPSLPF-- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +++ R  +   P               KL D+    G++  + H   +D  A 
Sbjct: 117 ----VCTVELARNQWNLRPT--------------KLPDVCRHLGLDLNHHHAG-SDAEAC 157

Query: 185 LAL 187
             +
Sbjct: 158 ARI 160


>gi|332756741|gb|EGJ87088.1| exonuclease family protein [Shigella flexneri 4343-70]
 gi|333004838|gb|EGK24360.1| exonuclease family protein [Shigella flexneri K-218]
          Length = 220

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 66/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSLLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+      P                +Q          ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRLWPGLKYSNMALYKTRKLNVQT------PPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
           +P Y   +     S    +   L  
Sbjct: 191 YPGYLRWLFNNLNSMSPELRLTLKH 215


>gi|322373528|ref|ZP_08048064.1| exonuclease [Streptococcus sp. C150]
 gi|321278570|gb|EFX55639.1| exonuclease [Streptococcus sp. C150]
          Length = 196

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 67/195 (34%), Gaps = 28/195 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ +D E F     +    Q + V++DR  E++   + F      D         +TG
Sbjct: 5   ETYIAFDLE-FNTVDGVSHIIQVSAVKMDRH-EEVGQFDSF---VYSDVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  K  +   +E+        F    +T +IGYN ++ D          +  + Y    
Sbjct: 60  ITADKIAKAPKLES-VLADFKAFV--GDTPLIGYNALKSDLPV-LAENGLDLEEQYA--- 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D+ D      A   +GI          + KL  +A   GI+  + H++  D  
Sbjct: 113 ------LDVFDEAFDRRASDLNGI---------VNLKLTSVADFFGIK-GHGHNSLEDAR 156

Query: 183 ATLALVWLIREKKPK 197
            T  +     E    
Sbjct: 157 MTAQIYEKFLELDEN 171


>gi|237747031|ref|ZP_04577511.1| oligoribonuclease [Oxalobacter formigenes HOxBLS]
 gi|229378382|gb|EEO28473.1| oligoribonuclease [Oxalobacter formigenes HOxBLS]
          Length = 218

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
           + +  D E  G D   DR  + A V  D     +    V+     D+ L   +A      
Sbjct: 44  NLIWVDLEMTGLDPETDRIIEVALVVTDPDLNILAEGPVYAIHQPDEILNAMDAWNKGTH 103

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +   ++     V EA     + +F           +  N I  D  +      +    
Sbjct: 104 GRSGLIERVKASNVTEAMAEDALIEFLEAYVPKGKSPMCGNTICQDRRFMAKTMPKLEAY 163

Query: 117 SYRW 120
            +  
Sbjct: 164 FHYR 167


>gi|241895341|ref|ZP_04782637.1| hypothetical protein HMPREF0877_0611 [Weissella paramesenteroides
           ATCC 33313]
 gi|241871315|gb|EER75066.1| hypothetical protein HMPREF0877_0611 [Weissella paramesenteroides
           ATCC 33313]
          Length = 183

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 60/204 (29%), Gaps = 43/204 (21%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
            ++V++D E  G +    +  +   ++V      IE   V    P         A+    
Sbjct: 7   KNYVVFDLEMNGSN----QIIEIGAIKVTGSQN-IEKFSVIVNNPPVGS-----AMKSFK 56

Query: 60  -ITG--------ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
            IT         IT       G+ E     R  +F       I+G+  +  D    +   
Sbjct: 57  YITKSMGGKNGWITLDMI-SHGICEERALNRFMRFVGDY--AIVGHAIVDGDVQLIKEGL 113

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
             N              +WD    +             P          L DLA   G++
Sbjct: 114 QHNNL-----------GKWDTRGKLYDTQQIHGAIAGNPQDI------SLMDLAEMYGVD 156

Query: 171 HVNA-HDAKADVYATLALVWLIRE 193
                H A  D   TLA+   +++
Sbjct: 157 LGEQKHRALPDAKETLAIFLAMKK 180


>gi|153008882|ref|YP_001370097.1| exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
           ATCC 49188]
 gi|151560770|gb|ABS14268.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
           ATCC 49188]
          Length = 213

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 56/200 (28%), Gaps = 23/200 (11%)

Query: 4   HFVIYDYETFGR-------DVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD- 54
            ++ +D ET G        D     R A  A +  D    +I+  + ++ +P    +P  
Sbjct: 6   KYLTFDTETNGLFNFKLPADAEGQPRLAHLAMIWADEDGNEIKR-KDYYIRPDGWTMPQG 64

Query: 55  PE-AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           P  A  + G+T +  + +G           +        I    N ++D    R    R 
Sbjct: 65  PGSAGAVNGLTDEFLMENGGHIDAVLHAYTREIER--GLIAVAFNAQYDLKIMRGELRRA 122

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                     N          +           +           KL +     G     
Sbjct: 123 GMPDLFEKTLNIC--------VMRPMTGLCQLPKRNGFGFKFP--KLSEALEYFGHSLEG 172

Query: 174 AHDAKADVYATLALVWLIRE 193
           AH A  D    L ++  +  
Sbjct: 173 AHQAINDAEGALIVMRELMR 192


>gi|37528414|ref|NP_931759.1| oligoribonuclease [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|41017433|sp|Q7MYS8|ORN_PHOLL RecName: Full=Oligoribonuclease
 gi|36787852|emb|CAE16967.1| oligoribonuclease [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 181

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 12/131 (9%)

Query: 1   MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDP 55
           M+    + +  D E  G D   DR  + A +  D     ++   V     +D+   L D 
Sbjct: 1   MSKSEHNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILDEGPVIAVHQSDEQLALMDK 60

Query: 56  EAVFIT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
             V      G+  ++     + + E  +   +F           I  N++  D  +    
Sbjct: 61  WNVRTHTGSGL-VERVKASKIDDREAEKATIEFLEKWVPAGASPICGNSVSQDRRFLFRY 119

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 120 MPELEAYFHYR 130


>gi|254372051|ref|ZP_04987544.1| oligoribonuclease [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254375197|ref|ZP_04990677.1| oligoribonuclease [Francisella novicida GA99-3548]
 gi|151569782|gb|EDN35436.1| oligoribonuclease [Francisella novicida GA99-3549]
 gi|151572915|gb|EDN38569.1| oligoribonuclease [Francisella novicida GA99-3548]
 gi|328676136|gb|AEB27006.1| Oligoribonuclease [Francisella cf. novicida Fx1]
          Length = 178

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           ++ +  D E  G DV   +  + A +  D+    I   E       D+ L   +   +  
Sbjct: 5   DNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKT 64

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+T Q+     +      ++I +F        +  +  N+I  D  +     Y   
Sbjct: 65  HAETGLT-QRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFL--AKYMPN 121

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
            D Y        +   LL+                + DD   S
Sbjct: 122 IDEYCHYRMLDVTTLKLLNQYWGDGKGFEKKNTHKALDDIRES 164


>gi|254360642|ref|ZP_04976791.1| exoribonuclease T [Mannheimia haemolytica PHL213]
 gi|153091182|gb|EDN73187.1| exoribonuclease T [Mannheimia haemolytica PHL213]
          Length = 215

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 26/201 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + +    F   P +    +PE++   G
Sbjct: 23  VVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNG 82

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ + +   E  + + +          +I  +N  FD  + +    R    
Sbjct: 83  IDIDNPLRGAVAENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKR---- 138

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +  +    + + D            +   +       F           +   AH 
Sbjct: 139 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQVAKIPF-----------DGKQAHS 185

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D   T  L   +  +   
Sbjct: 186 ALYDTERTAELFCAMVNRLKD 206


>gi|160931331|ref|ZP_02078731.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753]
 gi|156869715|gb|EDO63087.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753]
          Length = 172

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 41/161 (25%), Gaps = 15/161 (9%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           VI D ET   D    R  + + +        ++                 EA  +  I+P
Sbjct: 17  VILDTETTDLD---GRIIEISIIDAATGTVLMDQLIN-----PQGAPICAEARTVHHISP 68

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      +   R+    +     ++   N  FD       +     D+  W W   
Sbjct: 69  DDLATAP-TFTQVRPRLEDVVADR---VVMAWNAPFDRERIEAEYALAGLDAPAWPW--- 121

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                L   +        DG      D  A   +L  L   
Sbjct: 122 CCLMRLEASVMGCQWRRLDGPHRGLGDVIAARRRLIALQEM 162


>gi|291561739|emb|CBL40538.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [butyrate-producing bacterium SS3/4]
          Length = 324

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 26/237 (10%)

Query: 2   TNHFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
             +F+++D E      G++ +++R      +   V+++ + EK+        +P      
Sbjct: 1   MKNFIVFDLEWNQNPGGKEASVERLPFEIFEIGAVKLNEEREKVAEFH-RIIRPCVYRQM 59

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +T ++ ++  RDG   A        F        I       D    +     +
Sbjct: 60  HRIISEVTHVSIEELERDGEPFAAVME---DFLKWCGEDCIFCTWGSMDLTELQRNMVYH 116

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                          +   DV +       DG    S D+   SF L   A         
Sbjct: 117 GMTIPF------PKPFLFYDVQKLYSLCYQDGKARISLDEAVESFALDVDAPF------- 163

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
            H A  D   T  ++  +     K +  +  Y       +   ++       VS MF
Sbjct: 164 -HRALGDAEYTGRVLQAMDFDSVKDYVSVDYYLPPESEDEEFTLRFPEYTKFVSQMF 219


>gi|171909847|ref|ZP_02925317.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Verrucomicrobium spinosum DSM 4136]
          Length = 200

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 54/196 (27%), Gaps = 26/196 (13%)

Query: 2   TNHFVIYDYETF----GRDVALD-RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDP 55
           + H +I D E      G+    +    +   V +D +  E +     F  KP    +  P
Sbjct: 12  SPHLLIIDLEATCCDRGKVPRDEMEIIEIGAVLLDGKTLETVSEFGTFI-KPVRHPVLTP 70

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T IT  +     +   E   ++  +      C+           +  +  + +  
Sbjct: 71  FCTKLTTITQAEVDAAPM-FPEALAKLKAWLEPYPDCMFSSWGAYDKGQFQLDCAFHDLP 129

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
             +  +  N          ++  +A +    + P         +L+             H
Sbjct: 130 YPFSEAHLN----------LKKAFAEARGLKKRPGMGQALGMLRLEL--------EGTHH 171

Query: 176 DAKADVYATLALVWLI 191
               D      +V   
Sbjct: 172 RGIDDARNMARIVARC 187


>gi|304311523|ref|YP_003811121.1| Oligoribonuclease [gamma proteobacterium HdN1]
 gi|301797256|emb|CBL45476.1| Oligoribonuclease [gamma proteobacterium HdN1]
          Length = 184

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 10/130 (7%)

Query: 1   MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55
           MT+   + +  D E  G D   DR  + A V  ++  E +    VF     D+ L   D 
Sbjct: 1   MTDRKTNLIWIDLEMTGLDPDQDRIIEIATVITNKDLEILAEGPVFAVHQPDEILNGMDE 60

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
                 G +    +     V +A+   +  +F        T  I  N+I  D  +     
Sbjct: 61  WCTTQHGKSGLTARVRASTVNDAQAEAQTIEFLKEWVDPRTSPICGNSICQDRRFLYRYM 120

Query: 111 YRNFYDSYRW 120
                  +  
Sbjct: 121 PALEGYFHYR 130


>gi|296119553|ref|ZP_06838111.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967436|gb|EFG80703.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 223

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 46/169 (27%), Gaps = 24/169 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET   +    R    A +R+       + T                A  I GIT ++
Sbjct: 11  FDLETTSVNTREARIVTSAVLRIAGPDVVKKETLA-----DPGVEIPEAAAKIHGITTEQ 65

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
           A  +G    E  +                    +D+ ++           Y   +D    
Sbjct: 66  ARAEGRPHDEVLQETVNAIKAA-----------WDEGFT--------LIVYNAPYDLSVL 106

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           R    D       F P  I             L DL     +E  NAH+
Sbjct: 107 RNLTGDFTVTGPVFDPYLIDRVKDRYRKGKRTLGDLCKEYRVELGNAHE 155


>gi|332534627|ref|ZP_08410459.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035907|gb|EGI72388.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505]
          Length = 234

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 64/200 (32%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +   D     I+ T  F  +P +    +  A+   G
Sbjct: 19  VVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIDFNG 78

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E  + I +              +I  +N  FD  +      RN   
Sbjct: 79  IDPFSPLRGAVPEDEVIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERN--- 135

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
           + + +  +    +D   +                         L     A GIE  N  A
Sbjct: 136 NIKRTPFHPFVSFDTTSLA----------------GLALGQTVLAKACRAAGIEFDNSQA 179

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L  LI  +
Sbjct: 180 HSALYDTERTAELYCLIVNR 199


>gi|160935985|ref|ZP_02083359.1| hypothetical protein CLOBOL_00882 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441227|gb|EDP18944.1| hypothetical protein CLOBOL_00882 [Clostridium bolteae ATCC
           BAA-613]
          Length = 337

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 70/240 (29%), Gaps = 29/240 (12%)

Query: 4   HFVIYDYETFGRDVA--LD-------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           +++++D E + +      D          +   V+++  +E+  +      +P       
Sbjct: 2   NYIVFDLE-WNQSPNGKEDSVEHLPFEIIEIGAVKLNGNFEQTGTFHKLI-RPKVYKKMH 59

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +   +T +   +  ++G        R   +      C   + ++   +      +++  
Sbjct: 60  FKISEVTHMDMAELRQEGEPFDVVMNRFLAWCGEEEYCFCTWGSMDLTELQRNMAYHK-- 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                  +       D+  +    Y             DG     L       G+E    
Sbjct: 118 ---LPNPFPRPLLYLDIQKLYCLQY------------GDGKNKVSLDMAVQIQGMEEERP 162

Query: 175 -HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
            H A  D Y T  ++ ++  +    +  +  Y       +   +       +VS  F + 
Sbjct: 163 FHRALDDAYYTGRILSVLDMETFGTYVSVDYYGLPRNKAEEYRLHFPEYSKYVSREFDSR 222


>gi|47223800|emb|CAF98570.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 248

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 4/95 (4%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
          M+   V  D E  G D+  D+  + A +  D     +           D+ L        
Sbjct: 2  MSQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELLDGMSEWCK 61

Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT 91
             G +   Q      +   +       F      
Sbjct: 62 EHHGKSGLTQAVRNSKITLEQAEYEFLSFVRQHTP 96


>gi|261868521|ref|YP_003256443.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413853|gb|ACX83224.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 217

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 58/201 (28%), Gaps = 26/201 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D     + +    F  +  +    DPE++   G
Sbjct: 23  VVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQAFEGANIDPESLKFNG 82

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ + +  +E  + + +     +    II  +N  FD  +      R    
Sbjct: 83  IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFDQGFLMAAAQRMNAK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L   M                            A     +   AH 
Sbjct: 143 RNPFHPFSTFDTATLSGFMFGQTVLVKACQ-----------------AAKIPFDSQQAHS 185

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D   T  L   +     +
Sbjct: 186 ALYDTERTAELFCYMVNHLKQ 206


>gi|223044042|ref|ZP_03614082.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis
           SK14]
 gi|222442585|gb|EEE48690.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis
           SK14]
          Length = 184

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 56/203 (27%), Gaps = 31/203 (15%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M ++ FV  D+ET   +           V+V    +  ES                  + 
Sbjct: 1   MADNAFVALDFET--ANGKRTSICSVGMVKVINN-QITESFYTL---VNPFDYFTETNIN 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI P+        E      + +F +      +  +N  FD             ++  
Sbjct: 55  VHGIRPENVEDAPSFEY-VYPYMLKFINE---LPVVAHNAAFDMNVLHQSLKSLNIETPS 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            ++                        Q   R   A  + L+ L     ++    HDA  
Sbjct: 111 MTY--------------------FCSYQLAKRTIDAYRYGLKHLMNHYQLDFHGHHDALN 150

Query: 180 DVYATLALVWLIREKKPKLFEYL 202
           D  A   + + + +    L   L
Sbjct: 151 DAKACAMITFRLLKHYDDLPSML 173


>gi|229844583|ref|ZP_04464723.1| ribonuclease T [Haemophilus influenzae 6P18H1]
 gi|229812832|gb|EEP48521.1| ribonuclease T [Haemophilus influenzae 6P18H1]
 gi|301169030|emb|CBW28627.1| ribonuclease T (RNase T) [Haemophilus influenzae 10810]
          Length = 229

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 56/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  KP +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q        +     II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +M                           LA     +   AH 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKAC-----------------LAAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAKLFCYMVNH 203


>gi|323974622|gb|EGB69741.1| exonuclease [Escherichia coli TW10509]
          Length = 282

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 50/190 (26%), Gaps = 24/190 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
            + +  +++    Y          +   G  S            E   AH A AD     
Sbjct: 210 MTVYCAMELAAGYYG--------ATNRYGTISLACAASQAGLTWE-GQAHSAIADARMAA 260

Query: 186 ALVWLIREKK 195
            +V  I    
Sbjct: 261 GVVNAIAAYH 270


>gi|237785839|ref|YP_002906544.1| DNA polymerase III subunit epsilon [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758751|gb|ACR18001.1| DNA polymerase III, epsilon subunit [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 236

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 47/173 (27%), Gaps = 32/173 (18%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G +    R    A V +        S                 A  I GI+ + 
Sbjct: 21  FDLETTGTNPLQARIVTSALVSIHG-----GSANSTELLADPGIEIPESASQIHGISTEY 75

Query: 68  ALRDGVVEAEF----SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           A   G    +      R I+  +    T I+ +N                        +D
Sbjct: 76  AREHGEPHDDVLHKTIRAIYDGWERGQTLIV-FNAA----------------------YD 112

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               R      + +   F P  +            KL  L    GI+  NAH+
Sbjct: 113 LTILRHLEPSFVCSGLVFDPLVMGRALEPQRTGPRKLGTLVKRYGIQLDNAHN 165


>gi|167552492|ref|ZP_02346245.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|197251607|ref|YP_002146145.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197215310|gb|ACH52707.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205322894|gb|EDZ10733.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 232

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +            +   + +N            F R         W    
Sbjct: 57  MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
              LI   +   +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMQTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     +    +   L  
Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215


>gi|167522769|ref|XP_001745722.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776071|gb|EDQ89693.1| predicted protein [Monosiga brevicollis MX1]
          Length = 320

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 58/196 (29%), Gaps = 10/196 (5%)

Query: 7   IYDYETF---GRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + D+E      R        +   + +D +  E +++ +  + +P  +         +TG
Sbjct: 103 VMDFEATCEEERSPFPHEIIEIPAILLDAKSGELLDTFQT-YVRPKLNPQLSKFCTNLTG 161

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  +      +  E  +    F           +++        +    +F D   +  
Sbjct: 162 ITQDQV-DAAKLFPEAWQDFEDFLGKAVQKFKASHDVDDVRVLCASDGPWDFRDFLAFQC 220

Query: 123 DNGNSRWDLLDVMRAI---YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAK 178
                 +  +                ++W   +  A +  L  +  A G+      H   
Sbjct: 221 QLSQMDYPAVCQQWMDVRKRLTKHFKLKWAGPERAAYATGLDFMLQAVGLTFEGRPHSGI 280

Query: 179 ADVYATLALVWLIREK 194
            D      LV ++ ++
Sbjct: 281 DDSRNIARLVQVLIDE 296


>gi|149912277|ref|ZP_01900850.1| exonuclase [Moritella sp. PE36]
 gi|149804647|gb|EDM64704.1| exonuclase [Moritella sp. PE36]
          Length = 234

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 58/188 (30%), Gaps = 19/188 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M +  +  D+ET G +   D       V +     +++S        A       + V I
Sbjct: 42  MNSDILAVDFETTGLNAKQDNILSIGYVELAGSKIRLDSCYHQIV--AAHCELVGDNVTI 99

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             IT ++    G   A     +    +     ++ +               + F +    
Sbjct: 100 HNITDKE-KASGRPLASVVEDLLAALA--GKTMLVH----------YAQIEKTFLEQACI 146

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   + ++D +    A +       ++    +   L +L    G+   +AH+A  D
Sbjct: 147 KLYGMAPIFPVIDTL----ALAKKRHDRGNQAYAPSRLHLSNLREEYGLPRYSAHNALND 202

Query: 181 VYATLALV 188
             AT  L 
Sbjct: 203 AIATAELF 210


>gi|94499178|ref|ZP_01305716.1| ribonuclease T [Oceanobacter sp. RED65]
 gi|94428810|gb|EAT13782.1| ribonuclease T [Oceanobacter sp. RED65]
          Length = 222

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 71/219 (32%), Gaps = 28/219 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ--WEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V +D       +         KP +    +  A+  TG
Sbjct: 19  VVVDVETAGFNSQTDALLEIAMVIMDMDEQGNMLPGPAMSAHIKPFEGANLEQSALDFTG 78

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P      A  +G    +  + I +   V      I+  +N  FD  +      RN   
Sbjct: 79  IDPFDPDRRAEDEGPALKDMFKTIRKAMKVKGCKRAILVGHNAHFDLGFLNAAIERNNIK 138

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +G     L  +       +              S KL  +      ++ +AH 
Sbjct: 139 RSPFHPFSGFDTATLSGLALGHTVLA-------------RSCKLAGI----DFDNHSAHS 181

Query: 177 AKADVYATLALVWLIRE--KKPKLFEYLYDYRNKNQLRK 213
           A  D   T  L  LI    K+   +++ Y+   K   + 
Sbjct: 182 ALYDTQKTAELFALIVNKWKQLGGWDWAYEQHVKENEKD 220


>gi|253583228|ref|ZP_04860426.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium
           ATCC 27725]
 gi|251833800|gb|EES62363.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium
           ATCC 27725]
          Length = 188

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 20/200 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +  D ET G         Q +G+   +  +++     F+ KP        EA+ I G 
Sbjct: 2   KILFIDTETGGI-TEKSALIQLSGIV--QIGKEVAEEFNFYVKPFPGSEVTDEALKIQGR 58

Query: 64  TPQKALR---DGVVEAEFSRRIHQFFSVPN---TCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           T ++  +   + VV  +F + +++     N     ++G  N+RFD         RN    
Sbjct: 59  TREEIEKYDSEEVVFRKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINKFLRRNG--- 115

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
               +     +   LD ++ I A      Q   +       KL+      GIE   AHD+
Sbjct: 116 --EKYLFSYIQATTLDPLQWIAAL-----QLLKKIPVLKDNKLETWCNHFGIEL-KAHDS 167

Query: 178 KADVYATLALVWLIREKKPK 197
             D+ AT AL   +     +
Sbjct: 168 LEDIKATKALTKKMMLLMRE 187


>gi|89094457|ref|ZP_01167397.1| DNA polymerase III subunit epsilon [Oceanospirillum sp. MED92]
 gi|89081349|gb|EAR60581.1| DNA polymerase III subunit epsilon [Oceanospirillum sp. MED92]
          Length = 209

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 20/191 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET   DV          V++  +  K+ S++    K         +++ I  I    
Sbjct: 36  LDCETTSLDVKQGEIVSIGAVKI--KGRKVLSSDRLDIKLKPPKSLTGDSIKIHKIRESD 93

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
               G+   +   ++ +F    N  I+GY                         +     
Sbjct: 94  LAG-GIDIEDALEQVLEFV--GNRPILGYYVNYDIRMLD--------------KFIRPQF 136

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
            + L +    +     D I+W     G    +   ++    I  +  H A  D      +
Sbjct: 137 GFGLPNKAIELSHVYHDIIKW-KSVGGNVDLRFDTISKQLDIPMLERHTAIGDALTVALM 195

Query: 188 VWLIREKKPKL 198
              ++   P  
Sbjct: 196 YVRLKYGDPPD 206


>gi|261367316|ref|ZP_05980199.1| exonuclease family protein [Subdoligranulum variabile DSM 15176]
 gi|282570920|gb|EFB76455.1| exonuclease family protein [Subdoligranulum variabile DSM 15176]
          Length = 318

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 53/202 (26%), Gaps = 34/202 (16%)

Query: 4   HFVIYDYE--------TF---GRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           + +++D E        TF   G ++       Q    R++   + +++ EV   +P    
Sbjct: 2   NLIVFDLEWNIGYQPKTFLYHGTELTLRGEIIQIGAARINEWGDVLDTFEVNL-RPRIFR 60

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
                   +TG++       G+        + +F                D    +   +
Sbjct: 61  KLQHHIAKVTGLSQGDL-DAGMP---MKEGLQKFLDWAGPDAELAEWGLDDVPVLKQNLF 116

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
            N  D           R  L    R                       L+ +    GI  
Sbjct: 117 LNGLDERWPERWYDLQRIFLQTYPR----------------KEGEGMTLESVVDRLGIPK 160

Query: 172 VNA-HDAKADVYATLALVWLIR 192
               H+A  D   T  +   + 
Sbjct: 161 EEPFHNALDDALYTAKICRKLP 182


>gi|256821737|ref|YP_003145700.1| Exonuclease RNase T and DNA polymerase III [Kangiella koreensis DSM
           16069]
 gi|256795276|gb|ACV25932.1| Exonuclease RNase T and DNA polymerase III [Kangiella koreensis DSM
           16069]
          Length = 182

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 7/126 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           ++ +  D E  G D   D   + A +  D+    +E   V     +D+ L   +   V  
Sbjct: 6   DNLIWVDLEMTGLDPETDVVIEIATIVTDKDLNILEEGPVIAIHQSDEVLDNMNEWCVVQ 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   ++  +  + E + S    +F           +  N+I  D  +      +   
Sbjct: 66  HGKSGLTERVRQSSINEDQASDLTLEFLKKWIDEGKSPMCGNSICQDRRFMVKHMPKLEA 125

Query: 116 DSYRWS 121
             +   
Sbjct: 126 YFHYRH 131


>gi|56460902|ref|YP_156183.1| ribonuclease T [Idiomarina loihiensis L2TR]
 gi|56179912|gb|AAV82634.1| RNase T, degrades tRNA [Idiomarina loihiensis L2TR]
          Length = 215

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 16/136 (11%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDY 51
           M   F     V+ D ET G +   D   + A V +D       + ++S   +  KP +  
Sbjct: 9   MKQRFRGYMPVVVDVETAGFNAKTDALLEIAAVLLDFDDDGILKPVDSVH-YHVKPFEGA 67

Query: 52  LPDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYY 105
             +  A+   GI P      A+ +G    E  + I +          ++  +N  FD  +
Sbjct: 68  NIEQAAIDFNGIDPHCPLRGAVEEGEALRELFKPIRKAQKAAGCQRSVLVGHNSNFDHGF 127

Query: 106 SRNIFYRNFYDSYRWS 121
                 R       + 
Sbjct: 128 MMAAAERANLKRNPFH 143


>gi|319760500|ref|YP_004124438.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF]
 gi|318039214|gb|ADV33764.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF]
          Length = 221

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 56/199 (28%), Gaps = 25/199 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D       ++   F  K        P A+ +  
Sbjct: 21  VVIDVETAGLNANTDALLEIATITLKMDSDGWLCMDNVLHFNIKSFPGANLHPSALALNK 80

Query: 63  ITPQKALRDGVVEAEFSRRIHQF------FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  II  +N  FD  +      R   D
Sbjct: 81  IDPNNPLRFAVTEQEALNEIFKMVNMGIKIHECHKAIIVAHNASFDHSFIMAAIER-ISD 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNA 174
           +      N    +   D            +             L       G   +   A
Sbjct: 140 TNNNMNVNPFHPFVTFDTAALSGLVFGQTV-------------LATACKHAGIVFDKSKA 186

Query: 175 HDAKADVYATLALVWLIRE 193
           H A  D   T  L   +  
Sbjct: 187 HSALYDTEKTAILFCELVN 205


>gi|126326996|ref|XP_001381185.1| PREDICTED: similar to CGI-114 protein [Monodelphis domestica]
          Length = 333

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 33/127 (25%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +           D+ L        
Sbjct: 135 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELLDSMSEWCK 194

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 195 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 254

Query: 114 FYDSYRW 120
               +  
Sbjct: 255 MKHLHYR 261


>gi|78486054|ref|YP_391979.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2]
 gi|78364340|gb|ABB42305.1| conserved hypothetical protein containing exonuclease domain
           [Thiomicrospira crunogena XCL-2]
          Length = 293

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 61/211 (28%), Gaps = 35/211 (16%)

Query: 7   IYDYETFGRDVALDRPAQFA--GVRVDRQWE--KIESTEVFFCKPADDYLPDPEAVFITG 62
           I D ET G D  +    +     V  D Q    +I + + F  +P  +     E   +TG
Sbjct: 45  IIDTETTGLDTRVCEIIELGYQIVEFDSQGNFYQILTAKNFLNEPEGE--ISAEVTQVTG 102

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T        +  AE    +       +  +   +N  FD                    
Sbjct: 103 LTLDDVKGHQIPWAEVEADM------ADVQLCVAHNAAFDRPVVERYSD----------- 145

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    +D +    A   D            S   + L    G     AH A  DV 
Sbjct: 146 -------CFIDKVWGCSAVQVD----WFHLAKVGSRSQEFLCWKVGQFFYGAHRALDDVQ 194

Query: 183 A-TLALVWLIREKKPKLFEYLYDYRNKNQLR 212
           A T  L + I E     F +L     + ++ 
Sbjct: 195 ALTHLLTFPISEAALPAFHFLLASVRQQKVL 225


>gi|238796040|ref|ZP_04639551.1| Oligoribonuclease [Yersinia mollaretii ATCC 43969]
 gi|238719985|gb|EEQ11790.1| Oligoribonuclease [Yersinia mollaretii ATCC 43969]
          Length = 181

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V     +D+   L D   V 
Sbjct: 5   QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVR 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++       + +   +  +F           I  N++  D  +        
Sbjct: 65  THTGSGL-VERVKASPFSDHDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EAYFHYR 130


>gi|164686248|ref|ZP_02210278.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM
           16795]
 gi|164601850|gb|EDQ95315.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM
           16795]
          Length = 174

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 36/197 (18%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEA 57
           + +++ D ET G D             ++         KI        KP    +P    
Sbjct: 7   DKYIVVDLETTGLDPFS------GCEIIEIGITEIVNNKIGRNYSRLVKPK-GIIPS-HI 58

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             IT IT         +E      +  F        I  +N +FD  +          + 
Sbjct: 59  TNITSITNDMVEDAESLE----TVLPNFRKYVGDTTIIAHNAKFDLKFLNYYLDLLGLEK 114

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                         L++++   ++               + KL+       I + +AH A
Sbjct: 115 INNH-------ICTLEMLKRCKSYKG------------KNKKLETACNYYNIVNEHAHRA 155

Query: 178 KADVYATLALVWLIREK 194
            +D  AT  L   I+++
Sbjct: 156 NSDTLATAKLFLTIKDE 172


>gi|55821577|ref|YP_140019.1| DNA polymerase III subunit epsilon [Streptococcus thermophilus LMG
           18311]
 gi|55737562|gb|AAV61204.1| DNA polymerase III epsilon subunit [Streptococcus thermophilus LMG
           18311]
          Length = 196

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 28/195 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ +D E F     +    Q + V++ +  ++++  + F      +         +TG
Sbjct: 5   ETYIAFDLE-FNTVDGVSHIIQVSAVKMGQH-KEVDQFDSF---VYSNVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  K  +   +E+        F    NT +IGYN ++ D          N  + Y    
Sbjct: 60  ITADKIAKAPKLES-VLAEFKAFI--GNTPLIGYNALKSDLPI-LAENGLNLEEQYA--- 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D+ D      A   +GI          + KL  +A   GI+  + H++  D  
Sbjct: 113 ------LDVFDEAFDRRASDLNGI---------VNLKLTSVADFFGIK-GHGHNSLEDAR 156

Query: 183 ATLALVWLIREKKPK 197
            T  +     E    
Sbjct: 157 MTAQIYKKFLELDDN 171


>gi|302529267|ref|ZP_07281609.1| oligoribonuclease [Streptomyces sp. AA4]
 gi|302438162|gb|EFL09978.1| oligoribonuclease [Streptomyces sp. AA4]
          Length = 202

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 15/129 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M +H V  D E  G D+  D   + A +  D     +          ADD   D     +
Sbjct: 1   MNDHLVWIDCEMTGLDLGKDALIEIAALVTDADLNVLGEGVDIVIH-ADDAKLDGMPQVV 59

Query: 61  T------GITPQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRN-- 108
                  G+T ++        AE  +R+ ++            +  N+I  D  +     
Sbjct: 60  HDMHAKSGLT-EEVRASTTTLAEAEQRVLEYIREWVPDPASAPLAGNSIATDRGFIARDM 118

Query: 109 -IFYRNFYD 116
               R+ + 
Sbjct: 119 PELDRHLHY 127


>gi|154148582|ref|YP_001406342.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC
           BAA-381]
 gi|153804591|gb|ABS51598.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC
           BAA-381]
          Length = 262

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D ET G  +   +  +   ++V  + E + + + F              V +TGI 
Sbjct: 75  FCFVDIETNGG-IDKGQIIEIGAIKVRAK-EILNTFKTFVYASN----IPENIVELTGIH 128

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         S  +  F       +   +N++FD  +      +  +         
Sbjct: 129 TNDLKNAPH----LSNVLENFRLFLGDSVFVAHNVKFDYGFISESLQKIGFGGLLN---- 180

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R D +D+ +   A              A  + L  L    GIE+ + H A +D  + 
Sbjct: 181 --RRIDTIDLAKRTIA--------------AQKYGLSSLKELLGIENEH-HRAFSDALSC 223

Query: 185 LALVWLIREKKP 196
             +     +K P
Sbjct: 224 YEIFKFCTQKLP 235


>gi|90420422|ref|ZP_01228329.1| polymerase III, epsilon subunit and related 3'-5' exonucleases
          [Aurantimonas manganoxydans SI85-9A1]
 gi|90335150|gb|EAS48903.1| polymerase III, epsilon subunit and related 3'-5' exonucleases
          [Aurantimonas manganoxydans SI85-9A1]
          Length = 260

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 3  NHFV-IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             V + D ET G  +  D   +   + VD     I +     C PA     +P A  + 
Sbjct: 13 PTIVRVIDVETAGHRLEDDAVIEIGSIDVDLATGVIGNPLQTLCDPA-GVAINPHARRVH 71

Query: 62 GITPQKALRDGVVEAEFSRRIHQ 84
           I+           AE  R    
Sbjct: 72 QISDAMLDGAP-PFAEAVRPFAS 93


>gi|23012539|ref|ZP_00052599.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 218

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 54/223 (24%), Gaps = 41/223 (18%)

Query: 3   NHFVIYDYETFGRD---VALDR-----------PAQFAG---VRVDRQWEKIESTEVFFC 45
           +  +  D ET G      A  R             +      VR +  W+  +S +    
Sbjct: 11  DRIIAIDAETTGFQVPTPAEIRKMPKGLRLPGIVIEIGCLELVRSEEGWKTGKSWQ---R 67

Query: 46  KPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
           +          +V + GI+P +         +       F       ++  ++   +  +
Sbjct: 68  RIQPGGPVSKASVEVHGISPAELKNAP-SFRDILDEFEAFI---GQDVLLAHSAENEMAF 123

Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
               + R     +     + +      D+ R  +   P                L  L  
Sbjct: 124 LNFEYARAGRCGFDEMIFSVDDFVCTQDLSRQFFPGVPG--------------SLDVLCD 169

Query: 166 AN---GIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205
                  +    H A  D   T      +     +       +
Sbjct: 170 RLWVDRSDRFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSF 212


>gi|330829256|ref|YP_004392208.1| ribonuclease T [Aeromonas veronii B565]
 gi|328804392|gb|AEB49591.1| Ribonuclease T [Aeromonas veronii B565]
          Length = 225

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 60/205 (29%), Gaps = 26/205 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D Q   + +    F  +P +    +  A+  TG
Sbjct: 18  VVIDVETAGFNAKTDALLEIAAYTLKMDEQGWLVPDQVFHFHVEPFEGANLEKAALEFTG 77

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +              II  +N  FD  +      R    
Sbjct: 78  IDPYNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAAAERAGLK 137

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +       +                     +     ++  AH 
Sbjct: 138 RNPFHPFATFDTAALSGLALGQTVLAKACQ-----------------SARIPFDNKEAHS 180

Query: 177 AKADVYATLALVWLIREKKPKLFEY 201
           A  D   T  L   I  +   +  +
Sbjct: 181 ALYDTERTTELFCHIVNRWKSMGGW 205


>gi|315638420|ref|ZP_07893597.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis JV21]
 gi|315481411|gb|EFU72038.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis JV21]
          Length = 260

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 67/213 (31%), Gaps = 31/213 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E+ G  +   +  +   V++ +  ++++  E F  K  +          +TGI 
Sbjct: 72  FCIVDIESTGG-INSGQILEIGAVKI-QNHKELDRFESF-VKVDE---IPLNITELTGIE 125

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                         +R +  F    N  +   +N++FD  +     Y   +         
Sbjct: 126 LNMVKDAPN----LTRVLEAFRLFLNDSVFVAHNVKFDYNFISKSLYECGFGILLN---- 177

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              +   +D  +                  ++ +KL  L     IE  + H A  D  A 
Sbjct: 178 --RKICTIDFAQCC--------------IESSHYKLDALKEILKIESTH-HRALNDALAA 220

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
             +      K P   +   +  +  +  KL + 
Sbjct: 221 AEIFKYCLSKLPPHIKTTEELIHFTKTAKLKNK 253


>gi|238756168|ref|ZP_04617488.1| Oligoribonuclease [Yersinia ruckeri ATCC 29473]
 gi|238705642|gb|EEP98039.1| Oligoribonuclease [Yersinia ruckeri ATCC 29473]
          Length = 181

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G D   DR  + A +  D     +    V     +D+   L D   V  
Sbjct: 6   NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLALMDEWNVRT 65

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+  ++       +++   +   F           I  N++  D  +         
Sbjct: 66  HTGSGL-VERVKASPFSDSDAEMQTIAFLEQWVPAGKSPICGNSVGQDRRFLFRYMPALE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 AYFHYR 130


>gi|295698439|ref|YP_003603094.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola
           USDA]
 gi|291157346|gb|ADD79791.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola
           USDA]
          Length = 249

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 53/223 (23%), Gaps = 31/223 (13%)

Query: 6   VIYDYETFGRD-----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +I D ET G              +   V       +  +  +F          DP+A  I
Sbjct: 9   IILDTETTGMSSSGHPYEGHNIIEIGAV---EMINRELTGNLFHVYINPKRSVDPKAFEI 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I+           +E       F       I   +N  FD  +  +   R   +    
Sbjct: 66  HKISDNFLKDKP-TFSEIVDDFVDFIRNSELII---HNASFDVGFINHELSR--IEYSFC 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
           S        D L + R+++                    L  L     I+      H A 
Sbjct: 120 SIKKICRITDTLKIARSLFPG--------------KKNSLDALCDRYHIDRSKRSVHSAI 165

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            D      +  L+   +        D   K         Q   
Sbjct: 166 LDAKILSEIYKLMTGGQISFNFDH-DLEKKENFLNQYYFQRKR 207


>gi|163789521|ref|ZP_02183959.1| exonuclease [Carnobacterium sp. AT7]
 gi|159875053|gb|EDP69119.1| exonuclease [Carnobacterium sp. AT7]
          Length = 177

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET             A   V +  + ++           +       V + GI
Sbjct: 2   NFVALDFET--ASNQRHSACSVALTVVRKS-KIVDHYYSL---IKPETEFFWRNVQVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E   +I  FF+     +I  +N+ FD    +                
Sbjct: 56  TENDVKDAP-SFPEVWEQIKPFFTENK--LIVAHNLPFDRGVLQGCLDYYDLPQ------ 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  L  +++      +            + KL  +     I   N H+A  D  A
Sbjct: 107 ---PHFQTLCTVQSSRKLITEI----------PNHKLNTVCDHLNISLKNHHNALEDSNA 153

Query: 184 TLALVWLIREK 194
             A++  + + 
Sbjct: 154 CAAILLYLEDH 164


>gi|157418213|ref|YP_001481285.1| YacC [Escherichia coli APEC O1]
 gi|169546444|ref|YP_001711895.1| YacC [Escherichia coli]
 gi|331652519|ref|ZP_08353530.1| exonuclease superfamily [Escherichia coli M718]
 gi|88770263|gb|ABD51700.1| YacC [Escherichia coli APEC O1]
 gi|168830996|gb|ACA34777.1| YacC [Escherichia coli]
 gi|331049625|gb|EGI21691.1| exonuclease superfamily [Escherichia coli M718]
          Length = 282

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 51/191 (26%), Gaps = 26/191 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N+        +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNSRFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
            + +  +++    Y             +   +  L   A   G      AH   AD    
Sbjct: 210 MTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGQAHSTIADARMA 259

Query: 185 LALVWLIREKK 195
             +V  I    
Sbjct: 260 AGVVNAIAAYH 270


>gi|323128029|gb|ADX25326.1| DNA polymerase III subunit epsilon [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 195

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 5   DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 58  TGITSDKIAAAPKVE-EVITAFKDFVGELP--LIGYNAQKSDLPI-LAENGLDLSDQYQ- 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 113 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 154

Query: 181 VYATLALVWLIREKKPK 197
              T A+     E    
Sbjct: 155 ARMTAAIYKSFLETDTN 171


>gi|301156619|emb|CBW16090.1| oligoribonuclease [Haemophilus parainfluenzae T3T1]
          Length = 182

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +          ++    K ++  + 
Sbjct: 5   KQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVIAVHQSDELLNKMSEWCVK 64

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
              A    G+  ++     + E     +   F           I  N+I  D  +     
Sbjct: 65  THTA---NGL-VERVKASKITERAAELQTLDFLKRWVPKGASPICGNSIAQDKRFLYKYM 120

Query: 111 YRNFYDSYRWS 121
                  +   
Sbjct: 121 PDLADYFHYRH 131


>gi|170727178|ref|YP_001761204.1| exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC
           51908]
 gi|169812525|gb|ACA87109.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC
           51908]
          Length = 226

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 49/180 (27%), Gaps = 20/180 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D E  G D   D+      V +++    +   E    K         ++  I GI 
Sbjct: 43  LLAIDLEMTGLDAQFDQILSIGIVPIEKGRLILSKAEHKLVKIEGSV---GQSATIHGIL 99

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   V   E       F       ++  ++   D  + +     +F          
Sbjct: 100 DHHLNSA-VSPEEAMTW---FLERCQGQMLVAHHSPLDLAFLQKGLSTHFR------QRV 149

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L + +       + ++         + +L       G+    AH+A  D  A 
Sbjct: 150 TLMAIDTLAIEKRRLMRQHEVLK-------EGALRLGASRARYGLPVYAAHNALIDAIAC 202


>gi|89094681|ref|ZP_01167617.1| ribonuclease T [Oceanospirillum sp. MED92]
 gi|89081027|gb|EAR60263.1| ribonuclease T [Oceanospirillum sp. MED92]
          Length = 209

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 66/226 (29%), Gaps = 35/226 (15%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYL 52
           M N F     V+ D ET G +   D   + A V   +D      I+ +     +P +   
Sbjct: 1   MANRFRGFLPVVVDVETAGFNSRTDALLEIAAVTLTMDENGFLMIDQSFEAQVEPFEGAN 60

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS 106
            +  A+  TGI P    R+ V E +    I +              ++  +N  FD  + 
Sbjct: 61  LEQSALDFTGIDPYDPDREAVPERDAMEEIFKPVRKAIKAHGCKRAVLVGHNASFDQGFV 120

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R           N    +   D            +             L      
Sbjct: 121 NAAANRADIK------RNPFHPFSTFDTATLGGLAFGQTV-------------LARACQV 161

Query: 167 NGIEHV--NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            GIE     AH A  D   T  L  LI  +  +L  +      ++ 
Sbjct: 162 AGIEFDGKQAHSALYDTMKTAELFCLIVNRWKELGGWEMAESFQDD 207


>gi|325281116|ref|YP_004253658.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324312925|gb|ADY33478.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 163

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 28/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V  + E +++      KP  +Y  +     + 
Sbjct: 1   MQNFAAIDFET--ANNERSSVCSIGIVIVRGE-EIVDTFYSLI-KPEPEY-YNYWCSQVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+          +  E  ++I           +  +N  FD+   + +F     D     
Sbjct: 56  GLCSNDTTDAP-IFPEVWKQIEPLIK---GLPLVAHNKPFDESCLKAVFRVYQMD----- 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                            Y F               + +L  +A   G +  N H A AD 
Sbjct: 107 --------------YPDYEFYDTLCASRQAFPELENHQLHTVAATCGYQLENHHHALADA 152

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 153 EACAWIAREI 162


>gi|118577408|ref|YP_899648.1| exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
           DSM 2379]
 gi|118504913|gb|ABL01395.1| Exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
           DSM 2379]
          Length = 304

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 60/179 (33%), Gaps = 32/179 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITG 62
           +  D ET G + + D   +   V    D    +I      +    D   P DPE   +TG
Sbjct: 48  LCIDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRIVDTYSGFEDPCRPLDPEVTAVTG 107

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT       G    + +  + +  S  + C    +N +FD  +                 
Sbjct: 108 ITDDML--AGQSLDDAA--VGKIVSQASLCFC--HNCKFDRSFLER-------------- 147

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                R+   + +     F+    Q   +++  TS  L+ L    G   ++AH A  D 
Sbjct: 148 -----RFPEFEKL----PFACTMSQIDWKNELVTSRTLEYLLYKCGACFIDAHRALNDA 197


>gi|89255617|ref|YP_512978.1| oligoribonuclease [Francisella tularensis subsp. holarctica LVS]
 gi|134302673|ref|YP_001122642.1| oligoribonuclease [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156501565|ref|YP_001427630.1| oligoribonuclease [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010118|ref|ZP_02275049.1| oligoribonuclease [Francisella tularensis subsp. holarctica FSC200]
 gi|187932223|ref|YP_001892208.1| oligoribonuclease [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254367012|ref|ZP_04983048.1| oligoribonuclease [Francisella tularensis subsp. holarctica 257]
 gi|254368614|ref|ZP_04984630.1| oligoribonuclease [Francisella tularensis subsp. holarctica FSC022]
 gi|290953723|ref|ZP_06558344.1| oligoribonuclease [Francisella tularensis subsp. holarctica URFT1]
 gi|295312909|ref|ZP_06803630.1| oligoribonuclease [Francisella tularensis subsp. holarctica URFT1]
 gi|122501292|sp|Q2A5M3|ORN_FRATH RecName: Full=Oligoribonuclease
 gi|166216258|sp|A7N9M1|ORN_FRATF RecName: Full=Oligoribonuclease
 gi|166216260|sp|A4J020|ORN_FRATW RecName: Full=Oligoribonuclease
 gi|89143448|emb|CAJ78624.1| Oligoribonuclease [Francisella tularensis subsp. holarctica LVS]
 gi|134050450|gb|ABO47521.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134252838|gb|EBA51932.1| oligoribonuclease [Francisella tularensis subsp. holarctica 257]
 gi|156252168|gb|ABU60674.1| oligoribonuclease [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121517|gb|EDO65708.1| oligoribonuclease [Francisella tularensis subsp. holarctica FSC022]
 gi|187713132|gb|ACD31429.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 178

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           ++ +  D E  G DV   +  + A +  D+    I   E       D+ L   +   +  
Sbjct: 5   DNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKT 64

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+T Q+     +      ++I +F        +  +  N+I  D  +     Y   
Sbjct: 65  HTETGLT-QRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFL--AKYMPN 121

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
            D Y        +   LL+                + DD   S
Sbjct: 122 IDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDDIRES 164


>gi|306826686|ref|ZP_07459989.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|304431134|gb|EFM34140.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           pyogenes ATCC 10782]
          Length = 208

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 18  DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 71  TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAEKGLDLRDQYQ- 125

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167

Query: 181 VYATLALVWLIREKKPK 197
              T A+     E    
Sbjct: 168 ARMTAAIYESFLETDTN 184


>gi|308067866|ref|YP_003869471.1| Inhibitor of the KinA pathway to sporulation, exonuclease
           [Paenibacillus polymyxa E681]
 gi|305857145|gb|ADM68933.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Paenibacillus polymyxa E681]
          Length = 230

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 52/190 (27%), Gaps = 24/190 (12%)

Query: 5   FVIYDYE-TFGRDVALD-RPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           ++IYD E T  R+            V+V   D      ++   F  +P++  +   + V 
Sbjct: 10  YIIYDLEFTVSRNARYSSEIIDIGAVKVVQGDDGLYVADTFHSF-VRPSNRPVLSTDTVQ 68

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            TGIT +      +   E  ++   +    +   +             +    +      
Sbjct: 69  FTGITQRDIDAAPL-FPEAVKQFVTWLGTDSPYYLCAWGPDDRQKLVSHCRTHHV----- 122

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL-QDLALANGIEHVNAHDAK 178
                       L  +           +  S +       L Q L L N       H A 
Sbjct: 123 -----------DLGWIHNTNDIQKQISRLLSSNGKYRQLSLSQALELCNIDFDGQQHRAL 171

Query: 179 ADVYATLALV 188
            D   T  + 
Sbjct: 172 DDAVNTAQVF 181


>gi|124007771|ref|ZP_01692473.1| 3'-5' exonuclease eri-1 [Microscilla marina ATCC 23134]
 gi|123986717|gb|EAY26498.1| 3'-5' exonuclease eri-1 [Microscilla marina ATCC 23134]
          Length = 185

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 8/149 (5%)

Query: 5   FVIYDYETFGRDVALDRP---AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +VI D E    +   +R     +   V +  + + ++  + F  KP    +       +T
Sbjct: 3   YVIVDLEATCWETRENRANETIEIGAVCIGNEGKWVDEFDTF-VKPVTHPVLSEFCTQLT 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            IT +      +   E      Q+ +     +  ++          +  +    N    +
Sbjct: 62  SITQEMVDDAPL-FPEALDDFQQWINNCANGDQYVLCSWGYYDRVQFKNDCLLHNLPTQW 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
             S  +   ++  +  MR          +
Sbjct: 121 LASHISLKHQYADIKNMRRPIGMKKALQK 149


>gi|56270497|gb|AAH87528.1| LOC496097 protein [Xenopus laevis]
          Length = 223

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D   + A +  D   + +        K  D+ L        
Sbjct: 42  MGQRMVWVDLEMTGLDIEKDEIIEMACLITDSNLDILAEGPNLIIKQPDELLDGMSDWCK 101

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   Q      +   +       F      P  C +  N++  D  +      R 
Sbjct: 102 EHHGKSGLTQAVRESRITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKYMPRF 161

Query: 114 FYDSYRW 120
               +  
Sbjct: 162 MRHLHYR 168


>gi|319896653|ref|YP_004134846.1| ribonuclease t [Haemophilus influenzae F3031]
 gi|317432155|emb|CBY80506.1| ribonuclease T [Haemophilus influenzae F3031]
          Length = 229

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 56/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  KP +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q        +     II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +M                           LA     +   AH 
Sbjct: 143 RNPFHPFGMFDTASLSGLMFGQTVLVKAC-----------------LAAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAELFCYMVNH 203


>gi|120555687|ref|YP_960038.1| oligoribonuclease [Marinobacter aquaeolei VT8]
 gi|166216266|sp|A1U4D2|ORN_MARAV RecName: Full=Oligoribonuclease
 gi|120325536|gb|ABM19851.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 180

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
           +  +  D E  G D   +R  + A +  D Q   +           +    +  +     
Sbjct: 5   DRLIWIDLEMTGLDPEQERIIEMASIITDSQLNIVAEGPVIAIHQPDSLLEQMDEWCTRT 64

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFY 111
             A  +T    Q+     + EAE  ++  +F      P    +  N+I  D  +      
Sbjct: 65  HGASGLT----QRVKESTISEAEAEQQTLEFLGKHLEPGQSPLCGNSIGQDRRFLVKYMP 120

Query: 112 RNFYDSYRW 120
           +     +  
Sbjct: 121 KLEAFFHYR 129


>gi|297797093|ref|XP_002866431.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312266|gb|EFH42690.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 484

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 25/190 (13%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +D ET        +     +F  + V  +            +PA+  L  P +V   
Sbjct: 13  IAFFDVETT-IPFRAGQGYAILEFGSILVCPKKLVELRNYSVLVRPANLNLITPRSVKCN 71

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI  +         A+ +  ++           G+N ++FD       F     D     
Sbjct: 72  GIKREDVESA-ATFADIADTVYDIL--HGRIWAGHNILKFDCPRISEAFAEIGRDPPE-- 126

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L ++                   A   K+  LA   G+ +   H +  DV
Sbjct: 127 ---PKGTIDSLALL------------TQRFGRRAGDMKMATLASYFGLGN-QTHRSLDDV 170

Query: 182 YATLALVWLI 191
              L ++   
Sbjct: 171 RMNLEVLKYC 180


>gi|115314122|ref|YP_762845.1| oligoribonuclease [Francisella tularensis subsp. holarctica OSU18]
 gi|122325833|sp|Q0BNX6|ORN_FRATO RecName: Full=Oligoribonuclease
 gi|115129021|gb|ABI82208.1| oligoribonuclease [Francisella tularensis subsp. holarctica OSU18]
          Length = 178

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           ++ +  D E  G DV   +  + A +  D+    I   E       D+ L   +   +  
Sbjct: 5   DNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKT 64

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+T Q+     +      ++I +F        +  +  N+I  D  +     Y   
Sbjct: 65  HTETGLT-QRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFL--AKYMPN 121

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
            D Y        +   LL+                + DD   S
Sbjct: 122 IDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDDIRES 164


>gi|94989217|ref|YP_597318.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS9429]
 gi|94993104|ref|YP_601203.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS2096]
 gi|94542725|gb|ABF32774.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS9429]
 gi|94546612|gb|ABF36659.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes MGAS2096]
          Length = 208

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 18  DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 71  TGITSNKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167

Query: 181 VYATLALVWLIREKKPK 197
              T A+     E    
Sbjct: 168 ARMTAAIYKSFLETDTN 184


>gi|94676709|ref|YP_588563.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|166228561|sp|Q1LU01|RNT_BAUCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|94219859|gb|ABF14018.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 218

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 57/211 (27%), Gaps = 26/211 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A + +        K   T  F  +P    +  PEA+   G
Sbjct: 20  VVIDVETAGFNSGTDALLEIAAITLQMDHHGWLKTHKTLHFNIEPFPGSILQPEALIFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    +             +  I+  +N  FD  +      R    
Sbjct: 80  IDPDNPLRYAVTEREALYELFTIVHQGIKDDDCHRAILVAHNAAFDHSFLMAAANRTKIK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++                           L          AH 
Sbjct: 140 HNPFHPFATFDTAALSGLVLGQTVLLKAC-----------------LTAGIPFNTSEAHS 182

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRN 207
           A  D   T  L   +  +  +L  +     +
Sbjct: 183 ALYDAERTAELFCELVNRWKRLGGWTKVTTS 213


>gi|312795486|ref|YP_004028408.1| Oligoribonuclease [Burkholderia rhizoxinica HKI 454]
 gi|312167261|emb|CBW74264.1| Oligoribonuclease (EC 3.1.-.-) [Burkholderia rhizoxinica HKI 454]
          Length = 204

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 19/177 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV----- 58
           + +  D E  G     DR  + A V  D     +    V     +D  L   +A+     
Sbjct: 20  NLIWLDMEMTGLLPNTDRIIEVAVVVTDSNLTVVVEGPVLAIHQSDSTL---DAMDQWNK 76

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN----- 108
              G +   ++     V EA+ + ++  F S         +  N+I  D  +        
Sbjct: 77  NTHGRSGLIERVRASSVTEADAAAQLLAFLSQYVPAGKSPMCGNSICQDRRFMARWMPEL 136

Query: 109 IFYRNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
             + ++ +    +      RW   +       A            D    ++   L 
Sbjct: 137 EAFFHYRNLDVSTLKELCRRWQPAVYKGFQKRALHTALADIHESIDELKYYREHFLR 193


>gi|261823163|ref|YP_003261269.1| oligoribonuclease [Pectobacterium wasabiae WPP163]
 gi|261607176|gb|ACX89662.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium wasabiae
           WPP163]
          Length = 180

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 31/125 (24%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G +   DR  + A +  D     +    V      D    L D   V  
Sbjct: 5   NNLIWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAEGPVLAVHQPDSQLALMDDWNVRT 64

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       E         F           I  N+I  D  +          
Sbjct: 65  HGSSGLTDRVKASTTDEHAAELETLAFLQKWVPAGKSPICGNSIGQDRRFLFRYMPELEA 124

Query: 116 DSYRW 120
             +  
Sbjct: 125 YFHYR 129


>gi|307578072|gb|ADN62041.1| ribonuclease T [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 198

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 31/207 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52
           M+  F     V+ D ET G +       + A + +  D                PA    
Sbjct: 1   MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTD 60

Query: 53  PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYS 106
            DP+++ +TGI        A  + +        +            I+  +N  FD  + 
Sbjct: 61  IDPKSLEVTGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFL 120

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R  Y    +   +      L  +       +                     A  
Sbjct: 121 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQ-----------------AAG 163

Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
                 +AH A  D   T  L   I  
Sbjct: 164 LDWNAADAHSAVYDAEKTAHLFCTITN 190


>gi|238784781|ref|ZP_04628783.1| Oligoribonuclease [Yersinia bercovieri ATCC 43970]
 gi|238714294|gb|EEQ06304.1| Oligoribonuclease [Yersinia bercovieri ATCC 43970]
          Length = 181

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V      D+   L D   V 
Sbjct: 5   QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQTDEQLGLMDEWNVR 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++       + +   +  +F           I  N++  D  +        
Sbjct: 65  THTGSGL-VERVKASPFSDHDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EAYFHYR 130


>gi|212634649|ref|YP_002311174.1| ribonuclease T [Shewanella piezotolerans WP3]
 gi|212556133|gb|ACJ28587.1| Ribonuclease T [Shewanella piezotolerans WP3]
          Length = 235

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 80/250 (32%), Gaps = 44/250 (17%)

Query: 1   MTNHF--------------VIYDYETFGRDVALDRPAQFA--GVRVDRQWE-KIESTEVF 43
           MT+ F              V+ D ET G +   D   + A   +++D     +++ T  +
Sbjct: 5   MTDTFDHNKLKNRFRGYFPVVIDVETAGFNSKTDALLEIAVTMLKMDDDGVLQLDKTLHY 64

Query: 44  FCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYN 97
             +P +    +PEA+   GI P   LR  V E E    I +           +  II  +
Sbjct: 65  HIEPFEGANLEPEALAFNGIDPTNPLRGAVSEKEAFLEIFKEVKKAQKASECHRSIIVAH 124

Query: 98  NIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
           N  FD  +      RN       +  +  + +D   +                       
Sbjct: 125 NAAFDHGFVSEAIERNGLK---RTPFHPFATFDTAALA----------------GLAIGQ 165

Query: 158 FKLQDLALANGIEHVN--AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215
             L       GI   N  AH A  D   T  L  LI  +   L  + Y     +   + +
Sbjct: 166 TVLAKACAMAGIPFDNREAHSALYDTERTAELFCLIVNRWKSLGGWPYIADESDPEAEDV 225

Query: 216 DIQNMTPLVH 225
              ++ P+  
Sbjct: 226 AEADVKPIAE 235


>gi|153217654|ref|ZP_01951335.1| oligoribonuclease [Vibrio cholerae 1587]
 gi|229519881|ref|ZP_04409314.1| oligoribonuclease [Vibrio cholerae TM 11079-80]
 gi|297582247|ref|ZP_06944163.1| oligoribonuclease [Vibrio cholerae RC385]
 gi|124113399|gb|EAY32219.1| oligoribonuclease [Vibrio cholerae 1587]
 gi|229343122|gb|EEO08107.1| oligoribonuclease [Vibrio cholerae TM 11079-80]
 gi|297533548|gb|EFH72393.1| oligoribonuclease [Vibrio cholerae RC385]
          Length = 181

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  +     
Sbjct: 6   QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +      +  +  V E E   +   F           I  N+I  D  +      
Sbjct: 66  HTASGL----VARVRQSKVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 122 RLEAYFHYR 130


>gi|113969858|ref|YP_733651.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4]
 gi|113884542|gb|ABI38594.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4]
          Length = 228

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 43/176 (24%), Gaps = 20/176 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D E  G D   D+      V ++     + S +    +         ++  I GI     
Sbjct: 46  DLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLVQIQGSV---GQSATIHGILDNHL 102

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
               V   E       F S     I+  ++   D  + +            +        
Sbjct: 103 TEA-VSIEEAMAW---FVSQTRGHILVAHHSPLDCRFLQQDILS------IYHQAIVIPA 152

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            D L             +          S +L       G+    AH A  D  A 
Sbjct: 153 IDTL-------LLEKHRLLREHSVLKEGSLRLGACRERYGLPIYGAHSALTDALAC 201


>gi|325103810|ref|YP_004273464.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
 gi|324972658|gb|ADY51642.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM
           12145]
          Length = 214

 Score = 61.4 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 29/202 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADD 50
           M ++ +  D ET G     D P           Q + +       +I+    F     +D
Sbjct: 1   MKDYLLFIDTETSGLPKRWDLPYTNNLNWPYALQISWIIYHPDGTEIKRENYFIN--END 58

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
                +++ I GIT       G    +  R++       +  IIG+        +     
Sbjct: 59  VTISKDSIKIHGITEDFLKSHGKKRKDILRKLAYDIKKFDPLIIGH--------FVELDI 110

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
           +    D  R    N     +    M   + FS +              KL +L      +
Sbjct: 111 HVLSVDYLRARIKNPFKGRNFFCTMLKSHDFSKN--------PRIKFLKLSELFEYLFDK 162

Query: 171 H-VNAHDAKADVYATLALVWLI 191
           H  + H+A+ D        + +
Sbjct: 163 HPADLHNAEKDAEHAADCFFEL 184


>gi|153940748|ref|YP_001391589.1| exonuclease family protein [Clostridium botulinum F str. Langeland]
 gi|152936644|gb|ABS42142.1| exonuclease family protein [Clostridium botulinum F str. Langeland]
 gi|295319617|gb|ADF99994.1| exonuclease family protein [Clostridium botulinum F str. 230613]
          Length = 253

 Score = 61.4 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 70/207 (33%), Gaps = 30/207 (14%)

Query: 4   HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           +++I+D E    +   +            Q   ++++  +  I++      KP      +
Sbjct: 2   NYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNAL-VKPEIYSDLN 57

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P    +T +T     +      E  +   +F +        +      + +   ++Y+  
Sbjct: 58  PFVKNLTNLTMDSLNKA-KSFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYQLD 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +S    + N             + A++   + +P   +   S     + L +  ++ + 
Sbjct: 117 TESMPKEYIN-------------VQAYTGKYLNYPKSINVGLS---NAVQLFHITKNNDF 160

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H+A  D + T  +   I  +K +   Y
Sbjct: 161 HNAFNDAFYTAEVFKKIYSEKMRTKIY 187


>gi|242371797|ref|ZP_04817371.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W1]
 gi|242350498|gb|EES42099.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W1]
          Length = 213

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 31/203 (15%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M ++ FV  D+ET   +           V+V    +  ES                  + 
Sbjct: 30  MNHNAFVALDFET--ANGKRTSICSVGMVKVIDN-QITESFYTL---VNPFDYFTETNIN 83

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI P+        E      + QF        +  +N  FD         +   ++  
Sbjct: 84  VHGIKPEDVEGAPSFEY-VYPYMLQFIDQ---LPVVAHNAAFDMNVLHQSLKQLNIETPS 139

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            ++                        Q   R   A  + L+ L     ++    HDA  
Sbjct: 140 MTY--------------------FCSYQLAKRTIDAYRYGLKHLMNHYKLDFHGHHDALN 179

Query: 180 DVYATLALVWLIREKKPKLFEYL 202
           D  A   + + + +    L   L
Sbjct: 180 DAKACAMITFRLLKHYDDLPSML 202


>gi|301645642|ref|ZP_07245570.1| exonuclease [Escherichia coli MS 146-1]
 gi|301076071|gb|EFK90877.1| exonuclease [Escherichia coli MS 146-1]
          Length = 220

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNVALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|114332250|ref|YP_748472.1| oligoribonuclease [Nitrosomonas eutropha C91]
 gi|122313081|sp|Q0ADS5|ORN_NITEC RecName: Full=Oligoribonuclease
 gi|114309264|gb|ABI60507.1| Exonuclease, RNase T and DNA polymerase III [Nitrosomonas eutropha
           C91]
          Length = 181

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
           +N+ +  D E  G +   D   + A V  D Q   +    V      D  L   D     
Sbjct: 5   SNNLIWIDMEMTGLNPNTDCIIEIALVVTDAQLNTVAEAPVLVISQPDSVLNGMDKWNQS 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    K     + EAE   R+  F +     +   +  N+I  D  +      +  
Sbjct: 65  THGKSGLIDKVKASTLSEAEAEARMLAFLAPYVPADISPMCGNSICQDRRFLARCMPQLE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 AYFHYR 130


>gi|330815929|ref|YP_004359634.1| oligoribonuclease [Burkholderia gladioli BSR3]
 gi|327368322|gb|AEA59678.1| oligoribonuclease [Burkholderia gladioli BSR3]
          Length = 202

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 13/173 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFIT 61
           + V  D E  G +   DR  + A V  +   +K     V     +D+ L   +A      
Sbjct: 19  NLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDKAVEGPVLAIHQSDETLARMDAWNQSTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111
           G +    +     V EAE + RI  F +    P    +  N+I  D  +          +
Sbjct: 79  GRSGLIDRVRASTVSEAEAAARIQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPELESF 138

Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
            ++ +    +      RW   +       A            D    ++   L
Sbjct: 139 FHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYREHFL 191


>gi|291222534|ref|XP_002731271.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 954

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 72/264 (27%), Gaps = 54/264 (20%)

Query: 6   VIYDYETF--GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           V++D ET   G D       Q A        +  +                P A  +TG+
Sbjct: 497 VVFDLETTSFGID---SSICQIAA---SYDGKIFDEY------VDPCQPIHPAASNVTGL 544

Query: 64  TPQKALRDGVVEAEF--------SRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRN 113
           T       G +   F           +  F      N+ ++ +N   FD     +   R 
Sbjct: 545 T----YTCGKLFHNFNLVPTLSQKDALESFIEWIPLNSVLVAHNCKNFDARILVSSVQRY 600

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                            L  +      FS     +       +S+  ++L         +
Sbjct: 601 GL---------------LDKLKHKHCCFSDTLSVFREILPPRSSYSEENLVNDYLHTEYS 645

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYD-----------YRNKNQLRKLIDIQNMTP 222
           AH+AK DV+    L+         + ++ +               K  L  L  + +   
Sbjct: 646 AHNAKHDVHMLQQLIGKCNVDISHISKHSFSVDFIIEALEFLLCKKKNLSSLSQLISKKV 705

Query: 223 LVHVSGMFGASRSNTALIAPVAWH 246
           +        A+         +A++
Sbjct: 706 ITKCMAEKIAASGLAFCHLNLAYN 729


>gi|260770593|ref|ZP_05879525.1| oligoribonuclease [Vibrio furnissii CIP 102972]
 gi|260614423|gb|EEX39610.1| oligoribonuclease [Vibrio furnissii CIP 102972]
 gi|315178350|gb|ADT85264.1| oligoribonuclease [Vibrio furnissii NCTC 11218]
          Length = 181

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D    +  + A +  D Q   +    V      +  L   D      
Sbjct: 6   QNLIWIDLEMTGLDPETHKIIEIATIVTDSQLNILAEGPVLAVHQPESELQKMDDWCTNT 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
              +   ++  +  V E +   +   F           I  N+I  D  +      R   
Sbjct: 66  HTQSGLVERVRQSQVSEDDAVAQTIAFLEQWVPAGKSPICGNSIGQDRRFLYKHMPRLEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|160932735|ref|ZP_02080124.1| hypothetical protein CLOLEP_01576 [Clostridium leptum DSM 753]
 gi|156867809|gb|EDO61181.1| hypothetical protein CLOLEP_01576 [Clostridium leptum DSM 753]
          Length = 293

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 29/222 (13%)

Query: 5   FVIYDYETFGR-----DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           FVI D E  G          +   +F  V+V+ +    ++  V   KP        +   
Sbjct: 3   FVILDLEWNGTYSKRKSGFFNEIIEFGAVKVNDRLCVEDTFSV-VVKPQIGKKLSSKVKN 61

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I+ ++    GV       +  +F    N  ++ +           + +Y        
Sbjct: 62  LTNISSEEL-GLGVTYTRAVSKFKKFL--GNAVLMTWGTSDILALMENHQYYW------- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
                G  R D ++     Y       +     +      L   A   GI+      H A
Sbjct: 112 -----GTDRLDYIE----GYVNLQSFCERRVYYERGKQMGLSTAAQLLGIDVQGMEHHRA 162

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
             D    LA    +     +  +  ++  +K+Q    +  + 
Sbjct: 163 LDDSLLALACFRRL--YDEEELKPFFEDASKDQFYDKMRFKT 202


>gi|154493796|ref|ZP_02033116.1| hypothetical protein PARMER_03139 [Parabacteroides merdae ATCC
           43184]
 gi|154086409|gb|EDN85454.1| hypothetical protein PARMER_03139 [Parabacteroides merdae ATCC
           43184]
          Length = 174

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 28/193 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+E    +           V +    + I+S  +   +P  ++        I 
Sbjct: 1   MERFAAIDFEI--ANGKRSSICSIG-VAIIEDNKVIDSVYML-VRPYPNF-YTRFTTAIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT Q  +     E E   RI           +  +N  FD+   R              
Sbjct: 56  GITMQDTIDSPDFE-EAWTRIAGRLQD---IPLVAHNSSFDEGCLRAA------------ 99

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   +  D+    Y F               + +LQ +A   G +    H A AD 
Sbjct: 100 -------HEAYDLAYPKYQFYCTCRLSRRMYPFLANHQLQTVAAHCGYDLTYHHHAMADA 152

Query: 182 YATLALVWLIREK 194
           YA   +   +  +
Sbjct: 153 YACAHIAATMMRE 165


>gi|290958841|ref|YP_003490023.1| hypothetical protein SCAB_44151 [Streptomyces scabiei 87.22]
 gi|260648367|emb|CBG71478.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 201

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 24/200 (12%)

Query: 2   TNHFVIYDYE-TF---------GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
              FVI+D E T               L    Q   +R++ ++  ++S +    +P  + 
Sbjct: 1   MPTFVIFDLEFTTWPGAMEQHWSGPGRLREIVQIGALRLNEEYAVVDSYDTL-VRPVVNP 59

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           +  P    +TGI  Q   RDG+  A        F     +     N++            
Sbjct: 60  VLSPYFTTLTGIGQQAVDRDGLAPARALGDFLAF-CQGQSVFSYGNDMVVVGENIGWARA 118

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R              +    L+ +    A    G  W +                     
Sbjct: 119 RGEEIGPSALTPGFVNLRPWLNAVAPATAGVNSGRLWKALGLPRP------------GVP 166

Query: 172 VNAHDAKADVYATLALVWLI 191
            + H A  D ++    +  +
Sbjct: 167 GDEHAALFDCHSIALALRHL 186


>gi|292628026|ref|XP_002666829.1| PREDICTED: probable transcription factor PML-like isoform 1 [Danio
           rerio]
 gi|326679985|ref|XP_003201423.1| PREDICTED: probable transcription factor PML-like isoform 2 [Danio
           rerio]
          Length = 235

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 68/210 (32%), Gaps = 31/210 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET G D +     Q A V          +  +F             A  ITG + 
Sbjct: 13  VFFDLETTGLD-SSCEIVQLAAV---SGGH---TFNLFMV---PRRPFQRGASRITGFSV 62

Query: 66  QK----ALRDGV---VEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           +       R  +      E       F  + +   ++G+N  RFD              S
Sbjct: 63  KHQRLFLHRRPLLTSSLKEALLSFISFLRMLDHPLLLGHNIRRFDCPVLARALDEFSLRS 122

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           +     +G    D L + R +            +D G  SFK + L          AH+A
Sbjct: 123 HFQREVSGF--VDTLPLARQL-----------LKDHGLQSFKQESLVKNLLGVSYAAHNA 169

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRN 207
             DV A   L W ++    ++ ++ +   +
Sbjct: 170 LEDVQALQKLYWKLKPSANQIQQHTFTLDS 199


>gi|260805280|ref|XP_002597515.1| hypothetical protein BRAFLDRAFT_219821 [Branchiostoma floridae]
 gi|229282780|gb|EEN53527.1| hypothetical protein BRAFLDRAFT_219821 [Branchiostoma floridae]
          Length = 279

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 61/207 (29%), Gaps = 18/207 (8%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E                +F  + V+ +   +E     +C+P  +    P    +
Sbjct: 68  LLVIDFEATCMEENPPDFQHEIIEFPILLVNTETLIVEDQFHSYCRPTINPKLTPFCTKL 127

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +   +      +    +  + S       GY         + +  +      Y+ 
Sbjct: 128 TGITQKMVDKAPE-FPQVLEDVLDWMSSK-----GYGMGHSRFAVATDGPWDMCRFLYQ- 180

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
                   +  +   R    +      + +        KLQ++  + G++     H  + 
Sbjct: 181 -----QCLYCGIPYPRPFRRWINVKKHFANFYQTRGGTKLQEMLASLGLQFEGKPHSGRD 235

Query: 180 DVYATLALV-WLIREKKPKLFEYLYDY 205
           D      +   LI++          + 
Sbjct: 236 DAVNIARIAGRLIQDGCELRVNECLNN 262


>gi|293977832|ref|YP_003543262.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
           DMIN]
 gi|292667763|gb|ADE35398.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
           DMIN]
          Length = 1405

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 114/355 (32%), Gaps = 34/355 (9%)

Query: 5   FVIYDYETFGRDVALDRPA------------QFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           ++I+D ET G  +  + P             + + V +D + + I   + +  KP    +
Sbjct: 2   YIIFDTETTGLPLDFNTPIINIINLPLPRLVKLSWVLLDEKLQLI-ELKDYIIKPEGYEI 60

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           P   +  I GI+ + A+  G+         +      N   +  +N+ FD       F R
Sbjct: 61  PF-NSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSN--FLIGHNVFFDIKIVCAEFIR 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                  +     +++   ++          + ++WP+         L +L      +  
Sbjct: 118 IHKKISFFKKKIIDTKEISIN---YCAIKMGEKLKWPT---------LTELYKKLFNDTF 165

Query: 173 NAHDAKADVYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231
            AHD+K+DV AT      L+R     L +              I+++    +   +    
Sbjct: 166 IAHDSKSDVLATTKCFFELLRIGIISLNKVYLKKELLINNINRINLKKNKKIKLKNFNIE 225

Query: 232 ASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291
              S     + +  H  +       +++  ++   + D   +     T +  L G+    
Sbjct: 226 NQISKNKYYSHIHNHTSFSILSSTIDINSLIKKTIEYDMDAVGI---TDYGNLMGVFNFI 282

Query: 292 IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN 346
            +  ++N     +     K        I +   ++    +  Q          YN
Sbjct: 283 NRIKNINDN--FLVKKKIKPIIGCELYISYNDLIKKTDKIYNQVFFAKNKNGYYN 335


>gi|227488026|ref|ZP_03918342.1| DNA polymerase III, epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227542667|ref|ZP_03972716.1| DNA polymerase III, epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091888|gb|EEI27200.1| DNA polymerase III, epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181550|gb|EEI62522.1| DNA polymerase III, epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 224

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 53/192 (27%), Gaps = 30/192 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D ET   D         + +R+D       + +  +           EA  + GI+ 
Sbjct: 10  VAFDLETTTNDPLKAHVVTSSVIRIDGS-----NADETYLLADPGIPISEEAEKVHGISN 64

Query: 66  QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           + A  +G    +   +  +           +I +N         +               
Sbjct: 65  EYAKANGEPHDDVVAKTVELIRRGWDEGFTLIVFNGCFDLTILHQCS------------- 111

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 + +  ++   Y        +      A    L  ++    I    AH++ AD  
Sbjct: 112 ----PDFTIDGLVVDPYIIDKKKDHY-----RAGKRNLSAMSEYYEIRLDKAHNSSADSL 162

Query: 183 ATLALVWLIREK 194
           A   + W    +
Sbjct: 163 AAARIAWKQARR 174


>gi|153831492|ref|ZP_01984159.1| oligoribonuclease [Vibrio cholerae 623-39]
 gi|148873026|gb|EDL71161.1| oligoribonuclease [Vibrio cholerae 623-39]
          Length = 181

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  +     
Sbjct: 6   QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +      +  +  V E E   +   F           I  N+I  D  +      
Sbjct: 66  HTASGL----VARVRQSKVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 122 RLEAYFHYR 130


>gi|170019811|ref|YP_001724765.1| exodeoxyribonuclease X [Escherichia coli ATCC 8739]
 gi|169754739|gb|ACA77438.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC
           8739]
          Length = 220

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 64/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + +        +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-KPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|238764684|ref|ZP_04625628.1| Oligoribonuclease [Yersinia kristensenii ATCC 33638]
 gi|238697080|gb|EEP89853.1| Oligoribonuclease [Yersinia kristensenii ATCC 33638]
          Length = 181

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 11/173 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V     +D+   L D   V 
Sbjct: 5   QNNLIWIDLEMTGLDPLRDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVR 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  Q+       +++   +  +F           I  N++  D  +     Y  
Sbjct: 65  THTGSGL-VQRVKDSPFSDSDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFR--YMP 121

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
             ++Y        S    L         +    +   +        + +LA  
Sbjct: 122 ELEAYFHYRYLDVSTLKELARRWKPEILAGFKKKNTHQALDDIRESVAELAYY 174


>gi|157821045|ref|NP_001101050.1| three prime repair exonuclease 2 [Rattus norvegicus]
 gi|149029940|gb|EDL85052.1| rCG43845 [Rattus norvegicus]
          Length = 236

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 61/209 (29%), Gaps = 34/209 (16%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRV----------DRQW-----EKIESTEVFFCK 46
             FV  D E  G    +D   A+ +   V          D          ++   +  C 
Sbjct: 8   ETFVFLDLEATGL-PNMDPEIAEISLFAVHRSSLENPERDDSGSLVLPRVLDKLTLCMC- 65

Query: 47  PADDYLPDPEAVFITGITPQ--KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102
              +     +A  ITG++ +     R         R +  F S      C++ +N   +D
Sbjct: 66  --PERPFTAKASEITGLSSEGLMNCRKAAFNDAVVRTLQGFLSRQEGPICLVAHNGFDYD 123

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
                    R      R +        D L  +R +      G +      G  S+ L  
Sbjct: 124 FPLLCTELQRLGAHLPRDT-----VCLDTLPALRGLDRVHSHGTR----AQGRKSYSLAS 174

Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190
           L       E   AH A+ DV   L +   
Sbjct: 175 LFHRYFQAEPSAAHSAEGDVNTLLLIFLH 203


>gi|325297487|ref|YP_004257404.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324317040|gb|ADY34931.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 183

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 53/186 (28%), Gaps = 30/186 (16%)

Query: 4   HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +F+  D+ET  G         + AG+ V R  E    T  +  +P  +       + I G
Sbjct: 5   NFIAIDFETATG---KRASICE-AGICVVRNGEVT-KTRSWLVRPQGNR-YSYWNMQIHG 58

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I P   +       E    I ++       I+  +N  FD    R+       +    ++
Sbjct: 59  IRPNDTVDSPE-FPEVWAEISEYLKDIP--ILVAHNAAFDVGCIRHSLELYGMEKPDITY 115

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                       +RA       G              L  L     I +   H A  D  
Sbjct: 116 ---------YCSLRAARKLYDFGCN-----------SLDYLCDQFKIPYGRHHRAGDDAE 155

Query: 183 ATLALV 188
               L 
Sbjct: 156 MCARLF 161


>gi|197335542|ref|YP_002157176.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
 gi|197317032|gb|ACH66479.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
          Length = 213

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 65/205 (31%), Gaps = 20/205 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  V  D ET   +         A +++  +  ++ +++    K       + +++ I  
Sbjct: 28  DELVSIDCETTSLNPNHAELVSIAAIKI--KNNRVLTSQTIHLKLTPPQSLNSDSIKIHQ 85

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +  Q     G+ E +   ++ +F    N  I+GY+  R+D         R+F      S 
Sbjct: 86  LRHQDL-HHGLSEQQAMTQLLEFI--GNRPIVGYHI-RYDKKILDRACLRHFSHPLPNS- 140

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                      ++   + +     +            ++ ++   G+     HDA  D  
Sbjct: 141 -----------LIEVSHIYHNKLERLLPNAYY--DLSIEAISKHLGLPQTERHDALEDAI 187

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207
           A   +   +            +  +
Sbjct: 188 AAALIYVRLTHGDFPDIPSSKNAHS 212


>gi|117920981|ref|YP_870173.1| ribonuclease T [Shewanella sp. ANA-3]
 gi|166200021|sp|A0KY98|RNT_SHESA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|117613313|gb|ABK48767.1| RNAse T [Shewanella sp. ANA-3]
          Length = 222

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 64/200 (32%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +   D     I+ T  F  +P +    +PEA+   G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFNIEPFEGANLEPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +        S  +  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
               S  +  + +D   +       +                 L    +  GI   N  A
Sbjct: 140 ---RSPFHPFATFDTATLAGLAIGHTV----------------LAKACIMAGIPFDNKEA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAELFCHIVNR 200


>gi|304393986|ref|ZP_07375910.1| exodeoxyribonuclease 10 [Ahrensia sp. R2A130]
 gi|303293961|gb|EFL88337.1| exodeoxyribonuclease 10 [Ahrensia sp. R2A130]
          Length = 230

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 53/188 (28%), Gaps = 34/188 (18%)

Query: 7   IYDYETFGRDVALDRPAQFAG---VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + D ET G         + A    +  D  + +I  T     KP        EA+ +  I
Sbjct: 9   VIDTETTGFLPDAS-MVEIAWTDLLVGDDGFAEIGETISHLLKPKH--PIGLEAMAVHHI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                ++        +  +  +N  FD            +      W 
Sbjct: 66  TEAMVADAP-----MLGQLDPQ-PSIGSDYLAAHNADFDK----------GFYPVDREW- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +  ++       D    PS  +G   + L   A  +    + AH A  D Y 
Sbjct: 109 --------ICTLKCSRRLWEDA---PSHKNGVLRYWLNLDADMDYDRTLPAHRAGPDSYV 157

Query: 184 TLALVWLI 191
           T  L+  +
Sbjct: 158 TAYLLERM 165


>gi|323186850|gb|EFZ72169.1| exonuclease family protein [Escherichia coli RN587/1]
          Length = 220

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMSDITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|255656369|ref|ZP_05401778.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-23m63]
 gi|296450182|ref|ZP_06891943.1| epsilon subunit family exonuclease [Clostridium difficile NAP08]
 gi|296878563|ref|ZP_06902568.1| epsilon subunit family exonuclease [Clostridium difficile NAP07]
 gi|296260945|gb|EFH07779.1| epsilon subunit family exonuclease [Clostridium difficile NAP08]
 gi|296430370|gb|EFH16212.1| epsilon subunit family exonuclease [Clostridium difficile NAP07]
          Length = 168

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 26/194 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V+ D ET G D          G+   +  + +++            +       +T
Sbjct: 1   MKEYVVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRL---IKPKGIISSFITELT 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I+ +    +  +E     R  ++        I  +N +FD  +          +     
Sbjct: 58  HISNEMVENEEPLEL-VLPRFRKYI---GDRTIIAHNAKFDLKFLNYYLRMLNLEPINN- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     +++++   ++               + KL+       IE++NAH A +D 
Sbjct: 113 ------YICTVELLKKCKSYKG------------KNKKLETACAYYNIENINAHRADSDT 154

Query: 182 YATLALVWLIREKK 195
            AT  L   I+++ 
Sbjct: 155 LATAKLFLKIKDEY 168


>gi|302879370|ref|YP_003847934.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
 gi|302582159|gb|ADL56170.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
          Length = 181

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VF 59
            NH V  D E  G +   DR  + A V  D   E I    V      D  +   +A    
Sbjct: 5   QNHLVWIDMEMTGLNPDTDRIIEVAIVVTDSNLETIAEAPVLVVHQPDSIMDGMDAWNKS 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTC---IIGYNNIRFDDYYSRNIFYRNF 114
             G +   ++     + EA  S ++  F           +  N+I  D  +         
Sbjct: 65  THGKSGLIERVKASTLNEAAVSAQMVAFLKEYVPIRTSPMCGNSICQDRRFMARWMPEFE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 EYFHYR 130


>gi|228476985|ref|ZP_04061623.1| DNA polymerase III subunit epsilon [Streptococcus salivarius SK126]
 gi|228251004|gb|EEK10175.1| DNA polymerase III subunit epsilon [Streptococcus salivarius SK126]
          Length = 196

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 28/195 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ +D E F          Q + V++++  E+++  + F      D         +TG
Sbjct: 5   ETYIAFDLE-FNTVDGFSHIIQVSAVKMEQH-EEVDQFDSFVYS---DVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  K  +   +E+        F    +T +IGYN ++ D     +    +  D Y    
Sbjct: 60  ITADKIAKAPKLES-VLADFKSFV--GDTPLIGYNALKSDLPI-LSENGLDLEDQYA--- 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D+ D      A   +GI          + KL  +A   GI+  + H++  D  
Sbjct: 113 ------LDIFDEAFDRRASDLNGI---------VNLKLTSVAEFFGIK-GHGHNSLEDAR 156

Query: 183 ATLALVWLIREKKPK 197
            T  +     E    
Sbjct: 157 MTAQIYEKFLELDEN 171


>gi|310831493|ref|YP_003970136.1| putative helicase/exonuclease [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386677|gb|ADO67537.1| putative helicase/exonuclease [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 870

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 56/198 (28%), Gaps = 34/198 (17%)

Query: 7   IYDYETFGRDV------------ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           I D ET G                  R  +   +  + + + I+           +   +
Sbjct: 691 ILDTETTGLPKQRPFNPNNTSAYDNARMIELGYIIYNTKGDIIKKYNNL---INHNIKIN 747

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
               FI GIT     + G++  +     +Q     +  ++  +N+ FD     N  YR  
Sbjct: 748 --NSFIHGITSDICSKKGLIIDDVLDTFYQDLKECD--VLVCHNVDFDKNILLNEIYR-I 802

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                +   N  S    L   + +Y        W  ++                   +  
Sbjct: 803 KKMELYEHLNNKSTICTLKKTKELYGKRTKLSDWYKKN--------------FNDNTIQN 848

Query: 175 HDAKADVYATLALVWLIR 192
           H A  DV  T    +  +
Sbjct: 849 HRALDDVIMTGKCFFKCK 866


>gi|301155716|emb|CBW15184.1| ribonuclease T (RNase T) [Haemophilus parainfluenzae T3T1]
          Length = 229

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 54/198 (27%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D     + +    F  +P +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGNLQPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q              II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L   M                            A     +   AH 
Sbjct: 143 RNPFHPFGMFDTATLAGFMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAELFCYMVNH 203


>gi|116687265|ref|YP_840511.1| exonuclease, RNase T and DNA polymerase III [Burkholderia
           cenocepacia HI2424]
 gi|116652980|gb|ABK13618.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
           cenocepacia HI2424]
          Length = 293

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 12/109 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       + A +  DR    +  T V              A  I GIT 
Sbjct: 130 LFIDTETTGLDH-QAAIVEIAIL--DRAGAVLIDTLV-----KPAMPIPAAATEIHGITD 181

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
                          ++ +  +     ++  +N  FD+         + 
Sbjct: 182 ADVAGAPA-WNTIGPQVAELLA---GRLLIAHNGAFDERLLYQTSRSHG 226


>gi|238757512|ref|ZP_04618697.1| Oligoribonuclease [Yersinia aldovae ATCC 35236]
 gi|238704274|gb|EEP96806.1| Oligoribonuclease [Yersinia aldovae ATCC 35236]
          Length = 181

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V     +D+   L D   V 
Sbjct: 5   QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVR 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++       + +   +  +F           I  N++  D  +        
Sbjct: 65  THTGSGL-VERVKASPFSDHDAELQTIEFLKQWVPAGISPICGNSVGQDRRFLFRYMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EAYFHYR 130


>gi|297194244|ref|ZP_06911642.1| oligoribonuclease [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720537|gb|EDY64445.1| oligoribonuclease [Streptomyces pristinaespiralis ATCC 25486]
          Length = 200

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 56/200 (28%), Gaps = 33/200 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  +  D   + A +  D +   +        +P D  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60

Query: 60  ITGITPQ--KALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
               T      L DG      E +    I +    P    +  N++  D  +        
Sbjct: 61  QMHTTSGLLDVLADGKTLADAEEQVLSYIREHVKEPGKAPLCGNSVGTDRGF-------L 113

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D             D+  +      + P                    A  N  E   
Sbjct: 114 LRDMPTLEAFLHYRIVDVSSIKELARRWYPR-------------------AYFNSPEKSG 154

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A AD+  ++A +   RE
Sbjct: 155 NHRALADIRESIAELRYYRE 174


>gi|298253384|ref|ZP_06977176.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1]
 gi|297532779|gb|EFH71665.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1]
          Length = 261

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 4/110 (3%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G ++  D       V  + +                    +P+A  + G T + 
Sbjct: 34  FDTETTGANIGKDAIVSATLVLRNPELAHTGDVVS-TWLINPHQPMNPKASEVNGFTDEY 92

Query: 68  ALR---DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
                 +   E EF  R        N  ++ YN          ++ + + 
Sbjct: 93  LKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWHL 142


>gi|94991158|ref|YP_599258.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes
           MGAS10270]
 gi|94544666|gb|ABF34714.1| DNA polymerase III, epsilon chain [Streptococcus pyogenes
           MGAS10270]
          Length = 199

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 9   DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 61

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 62  TGITSDKIAAAPKVE-EVITAFKDFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 117 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 158

Query: 181 VYATLALVWLIREKKPK 197
              T A+     E    
Sbjct: 159 ARMTAAIYKSFLETDTN 175


>gi|168462596|ref|ZP_02696527.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195633859|gb|EDX52211.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 232

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +            +   + +N            F R         W    
Sbjct: 57  MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
              LI   +   +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     +    +   L  
Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215


>gi|304406144|ref|ZP_07387801.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus
           curdlanolyticus YK9]
 gi|304344728|gb|EFM10565.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus
           curdlanolyticus YK9]
          Length = 223

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 9/129 (6%)

Query: 2   TNHFVIYDYETFGRDVAL--DRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPE 56
              +++YD E              +   V++   D+   +I+  +  + KP  + +    
Sbjct: 1   MRTYIVYDLEFTVLRKQQYAADIIEIGAVKLTDGDQGPIEIDRFQT-YVKPERNKVITTH 59

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
               TGIT ++         +      Q+    +T     +    D  +          +
Sbjct: 60  TTEFTGITQEQVDAAP-TFPDAIDLFRQWI--GDTTYYLCSWGPDDKQHFVRQCRDMKIE 116

Query: 117 SYRWSWDNG 125
                  N 
Sbjct: 117 LNWLRNMND 125


>gi|163800878|ref|ZP_02194778.1| hypothetical protein 1103602000593_AND4_01408 [Vibrio sp. AND4]
 gi|159175227|gb|EDP60024.1| hypothetical protein AND4_01408 [Vibrio sp. AND4]
          Length = 207

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 59/210 (28%), Gaps = 14/210 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I + +T G   +     +F  +  D     +                  +A  I GIT 
Sbjct: 10  IILNTKTTGFG-SSAEIVEFTAICADSGKVIVNKL------VKPTCSIPAQATAIHGITD 62

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +           FS       +     II YN   F+         ++   +Y  S    
Sbjct: 63  EDVQGAFDFHLVFSNHFLPLLN--GRPIIIYN-TDFETRMIIQSLEKHCNSAYLQSVQEL 119

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYA 183
            S + +       YA       W    D      L +      ++  +  AH A +D   
Sbjct: 120 LSIFCVPQCAMLWYAEFHGL--WDHEHDDFKWQSLSNACAQELVDVSDLTAHRALSDCEM 177

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
           T  L+  +  K       L D   K+    
Sbjct: 178 TRRLINAVNSKIDDQTNQLSDGVTKSSSEA 207


>gi|194439945|ref|ZP_03072006.1| YacC [Escherichia coli 101-1]
 gi|194421140|gb|EDX37166.1| YacC [Escherichia coli 101-1]
          Length = 282

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 26/191 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGVQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N+        +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNSRFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
            + +  +++    Y             +   +  L   A   G      AH A AD    
Sbjct: 210 MTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGQAHSAIADARMA 259

Query: 185 LALVWLIREKK 195
             +V  I    
Sbjct: 260 AGVVNAIAAYH 270


>gi|260773739|ref|ZP_05882654.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260610700|gb|EEX35904.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 237

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 21/183 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D+ET G +   D       + +      + + + ++     ++  + E   +  I P
Sbjct: 53  VVLDFETSGLNPRQDEILSVGMINIHYPVMSLATAQHYYV--ESEHCIEAETAVVNHIVP 110

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +  L  G+   E    + +  S     ++  +              + F        D+ 
Sbjct: 111 ETLLG-GISRHELIECLVESLS---GKVVIAHG---------AEIEKQFLRQLLSLEDSL 157

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 LD MR   +          R       +L  +    G+    AH+A ADV AT 
Sbjct: 158 PLPLIFLDTMRLERSL------IKYRGIMYPDLRLAHIREQKGLPPYLAHNAFADVVATG 211

Query: 186 ALV 188
            L 
Sbjct: 212 ELF 214


>gi|332160015|ref|YP_004296592.1| oligoribonuclease [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318607428|emb|CBY28926.1| 3'-to-5' oligoribonuclease (orn) [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664245|gb|ADZ40889.1| oligoribonuclease [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330862350|emb|CBX72509.1| oligoribonuclease [Yersinia enterocolitica W22703]
          Length = 181

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V     +D+   L D   V 
Sbjct: 5   QNNLIWIDLEMTGLDPEKDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVR 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++       + +   +  +F        T  I  N++  D  +        
Sbjct: 65  THTGSGL-VERVKASPFNDHDAELQTIEFLKQWVPAGTSPICGNSVGQDRRFLFRYMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EAYFHYR 130


>gi|283782956|ref|YP_003373710.1| exonuclease [Gardnerella vaginalis 409-05]
 gi|283441223|gb|ADB13689.1| exonuclease [Gardnerella vaginalis 409-05]
          Length = 259

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 4/110 (3%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G ++  D       V  + +                    +P+A  + G T + 
Sbjct: 32  FDTETTGANIGKDAIVSATLVLRNPELAHTGDVVS-TWLINPHQPMNPKASEVNGFTDEY 90

Query: 68  ALR---DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
                 +   E EF  R        N  ++ YN          ++ + + 
Sbjct: 91  LKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWHL 140


>gi|152990271|ref|YP_001355993.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2]
 gi|151422132|dbj|BAF69636.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2]
          Length = 197

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 52/194 (26%), Gaps = 20/194 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  V  D ET G D   D     A + V +    +      + +         +++ I  
Sbjct: 22  DEIVFIDCETTGLDPKNDEILSIACLPVKKDKILLSK--ALYLELKPQKDISAQSIKIHH 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +             E   R+  F    N  + GY         S+       +       
Sbjct: 80  LRACDLQGAMEP-KEAIERVLYFIK--NRPVAGYYVEFDVKMISKYTKKFFGF------- 129

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L   +   +      +  +   G    K   +     +  + AH+A  D  
Sbjct: 130 --------TLPNKQIEVSGLYYDYKQKAIPQGFIDLKFDTILKDLNLPKLKAHNALNDTI 181

Query: 183 ATLALVWLIREKKP 196
            +  +   + +++ 
Sbjct: 182 MSAMIYLKLIKRRQ 195


>gi|126700009|ref|YP_001088906.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           630]
 gi|254975983|ref|ZP_05272455.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-66c26]
 gi|255093371|ref|ZP_05322849.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           CIP 107932]
 gi|255101551|ref|ZP_05330528.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-63q42]
 gi|255307420|ref|ZP_05351591.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           ATCC 43255]
 gi|255315116|ref|ZP_05356699.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-76w55]
 gi|255517786|ref|ZP_05385462.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-97b34]
 gi|255650901|ref|ZP_05397803.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-37x79]
 gi|260683972|ref|YP_003215257.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           CD196]
 gi|260687632|ref|YP_003218766.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           R20291]
 gi|306520788|ref|ZP_07407135.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-32g58]
 gi|115251446|emb|CAJ69279.1| DNA polymerase III, epsilon subunit [Clostridium difficile]
 gi|260210135|emb|CBA64288.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           CD196]
 gi|260213649|emb|CBE05485.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           R20291]
          Length = 168

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 26/194 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V+ D ET G D          G+   +  + +++            +       +T
Sbjct: 1   MKEYVVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRL---IKPKGIISSFITELT 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I+ +    +  +E     R  ++        I  +N +FD  +          +     
Sbjct: 58  HISNEMVENEEPLEL-VLPRFRKYI---GDRTIIAHNAKFDLKFLNYYLRMLDLEPINN- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     +++++   ++               + KL+       IE++NAH A +D 
Sbjct: 113 ------YICTVELLKKCKSYKG------------KNKKLETACAYYNIENINAHRADSDT 154

Query: 182 YATLALVWLIREKK 195
            AT  L   I+++ 
Sbjct: 155 LATAKLFLKIKDEY 168


>gi|169841446|ref|ZP_02874559.1| exonuclease I [candidate division TM7 single-cell isolate TM7a]
          Length = 106

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 1/100 (1%)

Query: 341 FKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
              +  KP  +   D +S+LYDGF  + D+   + +      Q+      F D RL +++
Sbjct: 1   MLNLLKKPDFTPQADAESKLYDGFINNQDKLRSEVVRNLDQNQIKQYTPEFEDSRLKQIY 60

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKL 440
            RY+ARN+P+ LS  E+ ++ E+RK  L R  +  +   L
Sbjct: 61  PRYKARNYPNALSSDERIEYDEYRKNRLNRQ-LPGFLKDL 99


>gi|170730478|ref|YP_001775911.1| ribonuclease T [Xylella fastidiosa M12]
 gi|167965271|gb|ACA12281.1| ribonuclease T [Xylella fastidiosa M12]
          Length = 210

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 31/207 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52
           M+  F     V+ D ET G +       + A + +  D                PA    
Sbjct: 13  MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTD 72

Query: 53  PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYS 106
            DP+++ +TGI        A  + +        +            I+  +N  FD  + 
Sbjct: 73  IDPKSLEVTGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFL 132

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R  Y    +   +      L  +       +                     A  
Sbjct: 133 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQ-----------------AAG 175

Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
                 +AH A  D   T  L   I  
Sbjct: 176 LDWNATDAHSAVYDAEKTAHLFCTITN 202


>gi|126174849|ref|YP_001050998.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS155]
 gi|160875861|ref|YP_001555177.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS195]
 gi|125998054|gb|ABN62129.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica
           OS155]
 gi|160861383|gb|ABX49917.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS195]
 gi|315268052|gb|ADT94905.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS678]
          Length = 228

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 51/184 (27%), Gaps = 20/184 (10%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D E  G +   D+      V ++R    +   E    +         ++  I GI     
Sbjct: 46  DLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLVQIRGSV---GQSATIHGILDNHL 102

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
           ++   +EA        F +     ++  ++   D  + +            +        
Sbjct: 103 VQAVTIEAAMGW----FINQTYGRVLVAHHAPLDCRFLQQDLLA------IYHQALVLPA 152

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            D L + R         I+         S +L       G+    AH A  D  A   L+
Sbjct: 153 IDTLMLERHRLLREHSVIK-------EGSLRLGACRERYGLPIYTAHSALTDALACGELL 205

Query: 189 WLIR 192
               
Sbjct: 206 LAQM 209


>gi|291548714|emb|CBL24976.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Ruminococcus torques L2-14]
          Length = 168

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 26/192 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V +D E+ G D   D   Q + +  +   E + S  +   +         EA  I  I+P
Sbjct: 3   VFFDIESTGLDPVRDEILQLSII--NENEEVLFSDYIRLVRHKTWN----EAEKINHISP 56

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +        E+   + I + F    T +I YN      +                     
Sbjct: 57  EMVKDKQTFESR-KQEIQKIFDQA-TELIAYNANFDISFLKAVGI--------------- 99

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 + +   +  FS    ++  +       KL   A   G E   AHD+  D+ AT 
Sbjct: 100 --VLPDVPISDPMIDFSFVYREYSEKYGIFKWQKLVVAARYYGYEFD-AHDSLEDIKATK 156

Query: 186 ALVWLIREKKPK 197
            +   ++EK  K
Sbjct: 157 FVYDKMKEKSQK 168


>gi|188589093|ref|YP_001920974.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188499374|gb|ACD52510.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 243

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 58/198 (29%), Gaps = 27/198 (13%)

Query: 4   HFVIYDYETFGRDVALD--------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           ++++YD E F    + D           Q   V+++   E + +      KP       P
Sbjct: 2   NYIVYDLE-FNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFN-RLIKPTVHTEIHP 59

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T IT +    +    ++      +F       +  +          +N+ + N  
Sbjct: 60  FIKDLTQITTEMVNSEKY-FSDVYDDFIKFIGNKEFTVCIW-GTSDIKELLKNVKFHNLE 117

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
           + Y     +     D+ ++            ++     G        +   N       H
Sbjct: 118 EIY-----DLRKYIDVQNLA----------SKYIKTQKGTKVGLKAAIEFFNLPIEKEFH 162

Query: 176 DAKADVYATLALVWLIRE 193
           DA  D Y T  +   +  
Sbjct: 163 DAFNDAYYTAQIFKKLYT 180


>gi|312140423|ref|YP_004007759.1| exonuclease [Rhodococcus equi 103S]
 gi|311889762|emb|CBH49079.1| exonuclease [Rhodococcus equi 103S]
          Length = 199

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 12/151 (7%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M +  V  D E  G  +  D+  + A +  D     +           D+ L        
Sbjct: 1   MQDKLVWIDCEMTGLRLGSDKLIEIAALVTDSDLNILGEGVDIVIHADDEALADMPDVVT 60

Query: 59  FIT---GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            +    G+T ++     V  AE        I +   V  T  +  N+I  D  +      
Sbjct: 61  QMHAKSGLT-EEVRASTVTLAEAEQMVLAYIREHVPVAGTVPLAGNSIATDRGFI--ARD 117

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
               DS+        S    L        + 
Sbjct: 118 MPELDSHLHYRMIDVSSIKELCRRWYPRIYF 148


>gi|332140721|ref|YP_004426459.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550743|gb|AEA97461.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype']
          Length = 210

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 26/205 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   V++D       + T  +   P +    +P A+   G
Sbjct: 18  VVIDVETAGFNAGTDALLELAAVTVKMDDDGILHPDETFHYHIDPFEGANLEPAALEFNG 77

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P  ALR  + E+E  + + +              +I  +N  FD  +      R    
Sbjct: 78  IDPNCALRGAIEESEAMKDLCKGIRKAQKNAGCQRSVIVAHNATFDQSFVNAAIERC--- 134

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           + + +  +    +D   +                   G T       A     +   AH 
Sbjct: 135 NIKRTPFHPFVSFDTTSLA--------------GLALGQTVLVKACRAAGIAFDQSEAHS 180

Query: 177 AKADVYATLALVWLIREKKPKLFEY 201
           A  D   T  L   +  +   L  +
Sbjct: 181 ALYDAQKTTELFCFMVNRYKALGGW 205


>gi|302877099|ref|YP_003845732.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307687794|ref|ZP_07630240.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|302579956|gb|ADL53968.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 255

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 70/243 (28%), Gaps = 32/243 (13%)

Query: 4   HFVIYDYE-------TFGRDVALD-----RPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           +++IYD E       +     A +        Q   +++   +E + +      KP    
Sbjct: 2   NYIIYDLEFNQEYLHSSEVQSANNSSLPFEIIQIGALKLTENFETVANFNSLI-KPTVYP 60

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           +  P    +T I             +      +F     T +  +               
Sbjct: 61  IIHPYVESLTKINDSMVSSC-ETFPQVYEDFLEFIGNDETTLCVWGISDI------KELL 113

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           RN       S     +  D+         ++   ++ P++     S     ++L N   +
Sbjct: 114 RNIKFYNLPSSTISKNYIDI-------QKYASKHLRTPNKSRIGLS---TAISLLNIPTN 163

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYL--YDYRNKNQLRKLIDIQNMTPLVHVSGM 229
              HDA  D Y T  +   I     K   Y+  +  R K    K+  +  +     +   
Sbjct: 164 GQFHDAFNDAYYTTEVFKHIYNNNIKTTTYIPNFSRRVKQSKEKIDTVALINQFEKMYNR 223

Query: 230 FGA 232
             +
Sbjct: 224 EMS 226


>gi|222622820|gb|EEE56952.1| hypothetical protein OsJ_06659 [Oryza sativa Japonica Group]
          Length = 348

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 55/201 (27%), Gaps = 41/201 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G DVA DR  + A +  D +           I   +       +       
Sbjct: 169 LVWIDLEMTGLDVAKDRILEIACIITDGKLTKQIEGPDLVINQKKDLLDNMDEWCKTHHA 228

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
           A  +T    Q+ L+  + E +   ++  F       +  +I  N++  D  + +      
Sbjct: 229 ASGLT----QRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAGNSVYVDLLFLK------ 278

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                            ++DV   +        +   R                      
Sbjct: 279 ----NYMPQLAAIFSHVIVDVSSIMALCIRWYPKERKRTPQK----------------GK 318

Query: 174 AHDAKADVYATLALVWLIREK 194
            H A  D+  ++A +    + 
Sbjct: 319 KHRAMNDIKESIAELKYYEDN 339


>gi|72162668|ref|YP_290325.1| oligoribonuclease [Thermobifida fusca YX]
 gi|71916400|gb|AAZ56302.1| exonuclease [Thermobifida fusca YX]
          Length = 213

 Score = 61.0 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 9/129 (6%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M +  V  D E  G D+  D   + A +  D +  +++       KP  + L      F+
Sbjct: 1   MNDSLVWIDCEMTGLDLKKDALIEVACLITDGELNQLDEGINVVIKPPQEALDQMG-EFV 59

Query: 61  T--GITPQKAL--RDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           T    T        +GV  AE        I ++   P    +  N+I  D  +      R
Sbjct: 60  TQMHTTSGLLAELENGVTLAEAEQLVLDHIRRYIPEPKKVPLCGNSIATDRAFLARDMPR 119

Query: 113 NFYDSYRWS 121
                +   
Sbjct: 120 VDEHLHYRM 128


>gi|324115837|gb|EGC09771.1| exonuclease [Escherichia coli E1167]
          Length = 285

 Score = 61.0 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 53/202 (26%), Gaps = 26/202 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      +   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTTEALEIG--LTNASGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q      +   + +R++          +I +N         +              W   
Sbjct: 157 QALCGAPL-WTDVARQLRHAI--GGRPVIIFNARFDIRILKQTAAAHRD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
            + +  +++    Y  +              +  L   A   G      AH A AD   T
Sbjct: 210 MTVYCAMELAAGYYGVTN----------RYGTISLASAASQAGLTWEGLAHSAIADARMT 259

Query: 185 LALVWLIREKKPKLFEYLYDYR 206
             +V  I    P L        
Sbjct: 260 AGVVNAIAAYHPSLMLMYAYIS 281


>gi|253690114|ref|YP_003019304.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756692|gb|ACT14768.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 180

 Score = 61.0 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 44/171 (25%), Gaps = 9/171 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G +   DR  + A +  D     +    V     +D    L D   V  
Sbjct: 5   NNLIWIDLEMTGLNPERDRIIEIATLVTDANLNVLAEGPVLAVHQSDSQLALMDDWNVRT 64

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       E         F           I  N+I  D  +     Y    
Sbjct: 65  HGASGLTDRVKASTTDERAAELETLAFLQKWVPAGKSPICGNSIGQDRRFLFR--YMPEL 122

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
           ++Y        S    L         +    Q   +        L +LA  
Sbjct: 123 EAYFHYRYLDVSTLKELARRWKPEILTGFKKQGTHQAMDDIRESLAELAYY 173


>gi|163802739|ref|ZP_02196629.1| oligoribonuclease [Vibrio sp. AND4]
 gi|159173446|gb|EDP58268.1| oligoribonuclease [Vibrio sp. AND4]
          Length = 181

 Score = 61.0 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
            + +  D E  G D    +  + A +  D +   +     +   +P ++     E    T
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPKEELAKMDEWCTNT 65

Query: 62  GIT---PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
             T    ++     + E +   +  +F           I  N+I  D  +          
Sbjct: 66  HTTSGLVERVCHSQISEQDAVEQTIEFLQKWVPRGVSPICGNSIGQDRRFLYKHMPDLEA 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|215487057|ref|YP_002329488.1| exodeoxyribonuclease X [Escherichia coli O127:H6 str. E2348/69]
 gi|312967045|ref|ZP_07781263.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|331647439|ref|ZP_08348531.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M605]
 gi|331657890|ref|ZP_08358852.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA206]
 gi|215265129|emb|CAS09517.1| DNA exonuclease X [Escherichia coli O127:H6 str. E2348/69]
 gi|312288509|gb|EFR16411.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|315299931|gb|EFU59169.1| exonuclease [Escherichia coli MS 16-3]
 gi|330911653|gb|EGH40163.1| exodeoxyribonuclease X [Escherichia coli AA86]
 gi|331043163|gb|EGI15301.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M605]
 gi|331056138|gb|EGI28147.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA206]
          Length = 220

 Score = 61.0 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 68/267 (25%), Gaps = 58/267 (21%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                        
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV--------------------- 88

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDAKADVYAT 184
                L  M   +  +    +        ++  L  +   N      ++ H A  D Y T
Sbjct: 89  -----LPEMPGEWICTMKLARRLWPGIKYSNMALYKIRKLNVQTPPGLHHHRALYDCYIT 143

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
                LI       +             + +      P +  +  F   +     ++ VA
Sbjct: 144 A--ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVA 188

Query: 245 W-HPRYKDSVIGCNLSGDMRVFQDLDS 270
              P Y   +     S    +   L  
Sbjct: 189 ERDPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|182417499|ref|ZP_02948826.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           5521]
 gi|237666097|ref|ZP_04526085.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378668|gb|EDT76195.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           5521]
 gi|237659044|gb|EEP56596.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 270

 Score = 61.0 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 25/203 (12%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
              Q   V+++  +E I +      KP+      P    +TGI  +    +        +
Sbjct: 54  EIIQIGAVKLNDNFEIIATFN-RLIKPSLYKEIHPFIEELTGINTEMVATEKH-FPSVYK 111

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
              +F    +  +  +               RN +       +N     D+ ++      
Sbjct: 112 EFLKFIGSNDFVMCVWGIDDIKQLI------RNIHYHSLNIHNNIKKYIDIQNLA----- 160

Query: 141 FSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE------- 193
                 +  +   G        +   N     + H+A  D   T  +   +         
Sbjct: 161 -----SKEFNTPKGNRLGLKTAVEFWNIPIQNDFHNALNDAVYTCHVFKKVFNKNLKPSI 215

Query: 194 KKPKLFEYLYDYRNKNQLRKLID 216
                +  +     K    KLI 
Sbjct: 216 YSNPNYNRIPTNSLKVDTEKLIS 238


>gi|71276282|ref|ZP_00652560.1| Ribonuclease T [Xylella fastidiosa Dixon]
 gi|71898489|ref|ZP_00680661.1| Ribonuclease T [Xylella fastidiosa Ann-1]
 gi|182681822|ref|YP_001829982.1| ribonuclease T [Xylella fastidiosa M23]
 gi|71162890|gb|EAO12614.1| Ribonuclease T [Xylella fastidiosa Dixon]
 gi|71731802|gb|EAO33861.1| Ribonuclease T [Xylella fastidiosa Ann-1]
 gi|182631932|gb|ACB92708.1| ribonuclease T [Xylella fastidiosa M23]
          Length = 210

 Score = 61.0 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 31/207 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52
           M+  F     V+ D ET G +       + A + +  D                PA    
Sbjct: 13  MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTD 72

Query: 53  PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYS 106
            DP+++ +TGI        A  + +        +            I+  +N  FD  + 
Sbjct: 73  IDPKSLEVTGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFL 132

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R  Y    +   +      L  +       +                     A  
Sbjct: 133 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQ-----------------AAG 175

Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
                 +AH A  D   T  L   I  
Sbjct: 176 LDWNAADAHSAVYDAEKTAHLFCTITN 202


>gi|315634736|ref|ZP_07890020.1| ribonuclease T [Aggregatibacter segnis ATCC 33393]
 gi|315476684|gb|EFU67432.1| ribonuclease T [Aggregatibacter segnis ATCC 33393]
          Length = 217

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 57/201 (28%), Gaps = 26/201 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D     + +    F   P +    DPE++   G
Sbjct: 23  VVIDVETAGLNAKTDALLELAAITLKMDDAGNLVPDQKCHFHIHPFEGANIDPESIKFNG 82

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ + +  +E  + + +     +    II  +N  FD  +      R    
Sbjct: 83  IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNASFDHGFVMAAAQRMNAK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L   M                            A     +   AH 
Sbjct: 143 RNPFHPFSTFDTATLSGFMFGQTVLVKACQ-----------------AAKIPFDSQQAHS 185

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D   T  L   +      
Sbjct: 186 ALYDTERTAELFCYMVNHLKH 206


>gi|254514041|ref|ZP_05126102.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           NOR5-3]
 gi|219676284|gb|EED32649.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           NOR5-3]
          Length = 183

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 20/185 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F+I D E  G D A         VRV+     + S E    +         ++  I  +
Sbjct: 2   SFLICDAEMSGLDPAKAELLSMGWVRVEGLEIVMGSAEHRLIRNRRSV---GQSATIHQL 58

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
              +         + +  +  F      C++ ++N R D  +      + F         
Sbjct: 59  RDCELREAD----DITEVLSDFLQAAAGCVLVFHNARLDTAFLDRAAKQAF--------- 105

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +D +           +      G    +L       G+ H +AH+A  D  A
Sbjct: 106 GTPLLLPTVDTLWLEQRLLQRQER----PIGQGDLRLGACRDRYGLIHHSAHNALTDAMA 161

Query: 184 TLALV 188
           T  L+
Sbjct: 162 TAELL 166


>gi|210614957|ref|ZP_03290405.1| hypothetical protein CLONEX_02619 [Clostridium nexile DSM 1787]
 gi|210150481|gb|EEA81490.1| hypothetical protein CLONEX_02619 [Clostridium nexile DSM 1787]
          Length = 190

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 61/196 (31%), Gaps = 29/196 (14%)

Query: 6   VIYDYETFGRDVAL----DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++YD ET G         D         +D Q   +      + KP +      +A  I 
Sbjct: 17  IVYDLETTGLYPFSPELGDEILSMCI--MDLQGSVLFEH---YFKP-EHTESWSKAAAIN 70

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP+K   +      F R   Q        +I YN I FDD +                
Sbjct: 71  GITPEKVENEKP--FSFYRDEVQRIFDAADILITYNGIHFDDSFLEAAG----------- 117

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                      DVM           +W          KL + A     E   AHDA  DV
Sbjct: 118 --IEIPDVMQFDVMLKFAWL---MHEWDDYHKSWRWHKLINCAAYYNYEF-PAHDATEDV 171

Query: 182 YATLALVWLIREKKPK 197
            ATL     +  +K K
Sbjct: 172 RATLHCYTEMMFQKSK 187


>gi|330001239|ref|ZP_08303928.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3]
 gi|328537753|gb|EGF63955.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3]
          Length = 219

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 67/265 (25%), Gaps = 58/265 (21%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G         + A V +    +   +      +P  D    P+A+ I  IT +
Sbjct: 4   VIDTETCGL---QGGIVEIASVDI-VDGQIT-NPMSHLVRP--DRPISPQAMAIHRITEE 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E     H       +     +N  FD                        
Sbjct: 57  MVADKPWIE-EIIPHYH------GSPWYVAHNASFDRRV--------------------- 88

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKADVYAT 184
                L  M      +    +        ++  L      N      ++ H A  D Y T
Sbjct: 89  -----LPEMHGEGICTMKLARRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYIT 143

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            AL+  I        + + D   +  L                  F   +     +A +A
Sbjct: 144 AALLLDIINVSGWTPDEMADITGRPALLT---------------TFTFGKYRGKAVAEIA 188

Query: 245 WH-PRYKDSVIGCNLSGDMRVFQDL 268
            + P Y   +          +   L
Sbjct: 189 ENDPGYLRWLFNNLDRMSPELRLTL 213


>gi|149578823|ref|XP_001514027.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 350

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 40  MGQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAKGPNLIIKQPDELLDSMSEWCK 99

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 100 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 159

Query: 114 FYDSYRW 120
               +  
Sbjct: 160 MKHLHYR 166


>gi|293392189|ref|ZP_06636523.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952723|gb|EFE02842.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 182

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +           +    K ++  + 
Sbjct: 5   KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAIHQPDELLNKMSEWCVK 64

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110
              A    G+  ++     + E     +   F        T  I  N++  D  +     
Sbjct: 65  THMA---NGL-IERVKASKLTERAAELQTLDFLKKYVPKGTSPICGNSVAQDKRFLFKYM 120

Query: 111 YRNFYDSYRWS 121
                  +   
Sbjct: 121 PELADYFHYRH 131


>gi|157374891|ref|YP_001473491.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
           HAW-EB3]
 gi|157317265|gb|ABV36363.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
           HAW-EB3]
          Length = 228

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 20/177 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D E  G D   D+      + +++   ++   E    +         ++  I GI   +
Sbjct: 46  VDLEMTGLDPNSDQILSIGLIPIEKGLLQLSRAEQKLIQINGSV---GQSATIHGIVDHQ 102

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
               GV           F       ++  ++   D  + +    +   +           
Sbjct: 103 LQ-AGVSIDSAIEW---FLDRTRGKLLVAHHSPLDLGFLQVAIKQVTGE------SIKLL 152

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
             D L + R       D ++         + +L       G+    AH+A  D  A 
Sbjct: 153 AIDTLALERKRLLRKQDVLK-------EGTLRLGACRARYGLPVYAAHNALVDALAC 202


>gi|123440753|ref|YP_001004745.1| oligoribonuclease [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|166216592|sp|A1JIQ8|ORN_YERE8 RecName: Full=Oligoribonuclease
 gi|122087714|emb|CAL10499.1| oligoribonuclease [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 181

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V     +D+   L D   V 
Sbjct: 5   QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVR 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++       + +   +  +F        T  I  N++  D  +        
Sbjct: 65  THTGSGL-VERVKASPFNDHDAELQTIEFLKQWVPAGTSPICGNSVGQDRRFLFRYMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EAYFHYR 130


>gi|325577877|ref|ZP_08148110.1| oligoribonuclease [Haemophilus parainfluenzae ATCC 33392]
 gi|325160307|gb|EGC72434.1| oligoribonuclease [Haemophilus parainfluenzae ATCC 33392]
          Length = 200

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +          ++    K ++  + 
Sbjct: 23  KQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVIAVHQSDELLNKMSEWCVK 82

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
              A    G+  ++     + E     +   F           I  N+I  D  +     
Sbjct: 83  THTA---NGL-VERVKASKITERAAELQTLDFLKRWVPKGASPICGNSIAQDKRFLYKYM 138

Query: 111 YRNFYDSYRWS 121
                  +   
Sbjct: 139 PDLADYFHYRH 149


>gi|319786534|ref|YP_004146009.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1]
 gi|317465046|gb|ADV26778.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1]
          Length = 219

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 54/211 (25%), Gaps = 39/211 (18%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYL 52
           M   F     V+ D ET G D       + A V ++           T      PA    
Sbjct: 22  MARRFRGYLPVVVDVETGGFDWNRHALLEMAAVPIEMDEQGLLVPGKTAAAHFIPAPGTE 81

Query: 53  PDPEAVFITGITPQKALRDG----VVEAEFSRRIHQFFSV------PNTCIIGYNNIRFD 102
            DP+++ +TGI     L         E +    +                I+  +N  FD
Sbjct: 82  IDPKSLEVTGI----VLDHPFRLAKPERDALGHVFNQVRAAVRRNGCQRAILVGHNAHFD 137

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
             +      R+ +    +   +      L  +       +                    
Sbjct: 138 LNFVNAAVARSGHKRNPFHPFSVFDTVTLGGIAYGQTVLARALQ---------------- 181

Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIRE 193
            A     +   AH A  D   T  L   I  
Sbjct: 182 -AAGLEWDAREAHSAVYDAEQTAKLFCRIAN 211


>gi|108802442|ref|YP_642638.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119855268|ref|YP_935871.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
 gi|108772861|gb|ABG11582.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119697985|gb|ABL95056.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 193

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 9/101 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G D    R    A + V        +             P P    I G+T
Sbjct: 7   FVVVDVETSGFDPHTARILSVAALVVTTNGVTTTALHTL---LDPGVDPGP--TDIHGLT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
                      A+ +  +    S     I+  +N  FD  +
Sbjct: 62  TAMLAGQPR-YADIATDLAALLS---GRILVAHNAAFDYAF 98


>gi|269941365|emb|CBI49762.1| putative exonuclease [Staphylococcus aureus subsp. aureus TW20]
          Length = 184

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 52/196 (26%), Gaps = 30/196 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + FV  D+ET   +           V+V    +  ++                + + I 
Sbjct: 3   QDAFVALDFET--ANGKRTSICSVGMVKV-IDSQITKTFHTL---VNPQDYFSQQNIKIH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+        +      + QF +      +  +N  FD              +   +
Sbjct: 57  GIQPEDVENAPTFDY-VFPYMMQFIAD---LPVVAHNAAFDMNVLHQSIQNIGLPTPNLT 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +                        Q   R   +  + L+ +     ++    HDA  D 
Sbjct: 113 Y--------------------FCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDA 152

Query: 182 YATLALVWLIREKKPK 197
            A   + + + +    
Sbjct: 153 KACAMITFRLLKNYEN 168


>gi|227487527|ref|ZP_03917843.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227092509|gb|EEI27821.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51867]
          Length = 2526

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 86/298 (28%), Gaps = 45/298 (15%)

Query: 5    FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            F + + +T G     DR  +   V      +   +                 A  I GI+
Sbjct: 2129 FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTL---INPRRSFSDSA--IHGIS 2182

Query: 65   PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +   V E E +  I +        I+  ++  F        F R+   +       
Sbjct: 2183 ERMTVAAPVFE-EVADDIAELLDRR---ILIAHDAPFVSKQLGREFSRSNVKAIHL---- 2234

Query: 125  GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                 +    +  G++   L     A G+++ ++H A  D  AT
Sbjct: 2235 ---------------NDGYCTMSHSPKLLGSSGRSLSSALDAAGLKNEHSHCALDDAMAT 2279

Query: 185  LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
              L+ ++                K  +            +H       +R    +    +
Sbjct: 2280 ANLLNVLLH--------------KGAIAAKYPAMQFVSAIHPRRTPTVTREFVEMTESTS 2325

Query: 245  WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT--SHDELKGLVPVPIKEVHLNKC 300
            W  +  D +     +      Q LD V L + + T    D  K  V + + +  +N+ 
Sbjct: 2326 WISQIIDQLPTSGEADIDEFMQLLDIVMLDREVSTHERLDLYKQAVNLGLSQQDINRA 2383


>gi|167581087|ref|ZP_02373961.1| oligoribonuclease [Burkholderia thailandensis TXDOH]
          Length = 201

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 19/130 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDP 55
           + V  D E  G +   DR  + A V  +   +         I  ++    K  D      
Sbjct: 19  NLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNK--- 75

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110
                 G +    +     V EA+ + +I  F      P    +  N+I  D  +     
Sbjct: 76  ---NTHGRSGLIDRVRASSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM 132

Query: 111 YRNFYDSYRW 120
                  +  
Sbjct: 133 PELERFFHYR 142


>gi|160893764|ref|ZP_02074548.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50]
 gi|156864749|gb|EDO58180.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50]
          Length = 216

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 56/194 (28%), Gaps = 31/194 (15%)

Query: 5   FVIYDYETFGRD--------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DP 55
           ++  D+E    D        +  +   +   V++D  +++I+S + +         P   
Sbjct: 3   YIFVDFEMNQIDNSHPDELKICKNEIIEIGAVKLDDTYKEIDSFKTY---VKPGITPVTS 59

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +TGIT +          +F+  + +F +   +  + Y     D             
Sbjct: 60  RITNLTGITNEMVDDAP----DFAIAMDRFIAWGLSADVIYAWSENDLRQFNRER----- 110

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNA 174
                        ++  D  +    +     ++           L D     G +     
Sbjct: 111 ---------KLKSYNNPDAQKLASKWKDFQKEFARMLGTRRRLALSDAVFYLGEDFQGKE 161

Query: 175 HDAKADVYATLALV 188
           HDA  D   T  + 
Sbjct: 162 HDALWDARNTAEVF 175


>gi|157161311|ref|YP_001458629.1| exodeoxyribonuclease X [Escherichia coli HS]
 gi|157066991|gb|ABV06246.1| exodeoxyribonuclease X [Escherichia coli HS]
          Length = 220

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLHWLFNNLDSMSPELRLTLKH 215


>gi|113970710|ref|YP_734503.1| ribonuclease T [Shewanella sp. MR-4]
 gi|114047939|ref|YP_738489.1| ribonuclease T [Shewanella sp. MR-7]
 gi|122944589|sp|Q0HTX3|RNT_SHESR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|123029558|sp|Q0HHM1|RNT_SHESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|113885394|gb|ABI39446.1| RNAse T [Shewanella sp. MR-4]
 gi|113889381|gb|ABI43432.1| RNAse T [Shewanella sp. MR-7]
          Length = 222

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 66/207 (31%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +   D     I+ T  F  +P +    +PEA+   G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFNIEPFEGANLEPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +        S  +  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
               S  +  + +D   +       +                 L    +  GI   N  A
Sbjct: 140 ---RSPFHPFATFDTATLAGLAIGHTV----------------LAKACIMAGIPFDNKEA 180

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A  D   T  L   I  +   L  +
Sbjct: 181 HSALYDTERTAELFCYIVNRWKHLGGW 207


>gi|56413202|ref|YP_150277.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362128|ref|YP_002141765.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127459|gb|AAV76965.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093605|emb|CAR59069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 232

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 63/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V      +            D L  P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRLITPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +            +   + +N            F R         W    
Sbjct: 57  MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
              LI   +   +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     +    +   L  
Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215


>gi|323961899|gb|EGB57498.1| exonuclease [Escherichia coli H489]
          Length = 220

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNIALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|301166629|emb|CBW26205.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 273

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 58/196 (29%), Gaps = 27/196 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M  + V    E  G ++A DR  +   V  D ++ +            D      E   +
Sbjct: 28  MNENLV----E-NGLNLAKDRVTEIGAVLWDTEFNQPIKIYSELIHEEDRLPISEEIEEL 82

Query: 61  TGITPQKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           TGI     L+ G+   E    + +          I+ +N   +D    R +F R      
Sbjct: 83  TGINDIMLLKYGLQGDEIRMALERLSIIMKKADFIMAHNGPNYDIPMLRALFERFRVPFP 142

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              W +  +  +                          +  L  L  A+G  +   H A 
Sbjct: 143 EMKWIDSKTDIEF--------------------PKRIIANSLSALEHAHGFINPFPHRAV 182

Query: 179 ADVYATLALVWLIREK 194
            DV + L +      +
Sbjct: 183 TDVLSMLKVAAHYDFE 198


>gi|256851438|ref|ZP_05556827.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN]
 gi|260660859|ref|ZP_05861774.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN]
 gi|282933112|ref|ZP_06338499.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|297206253|ref|ZP_06923648.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           jensenii JV-V16]
 gi|256616500|gb|EEU21688.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN]
 gi|260548581|gb|EEX24556.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN]
 gi|281302616|gb|EFA94831.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|297149379|gb|EFH29677.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           jensenii JV-V16]
          Length = 177

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 28/195 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET  R          A V V    + I+               D   + +  I
Sbjct: 2   NFIAMDFETANRHPESA--CSLALVMVRNN-KIIDRFYTV---INPQMPFDGRNIQVHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TP          AE   +I          ++  +N RFD    +    R   D       
Sbjct: 56  TPDDVKDAP-TMAEVWPKIKAL--YQPGMLVAAHNARFDANVLKMSLARYDIDE------ 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + ++D ++    F PD            + KL  +A A  +E  + H+A +D  A
Sbjct: 107 ---PHYLVIDTLKTSRLFEPDL----------PNHKLNTVAEALDVELWHHHNALSDSEA 153

Query: 184 TLALVWLIREKKPKL 198
              ++    EK    
Sbjct: 154 CAGILIKQNEKMGDE 168


>gi|169847019|ref|XP_001830222.1| oligoribonuclease [Coprinopsis cinerea okayama7#130]
 gi|116508698|gb|EAU91593.1| oligoribonuclease [Coprinopsis cinerea okayama7#130]
          Length = 216

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 53/201 (26%), Gaps = 24/201 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62
            V  D E  G +   D+  + A +  +   E ++    +  +     L   D       G
Sbjct: 15  IVWVDLEMTGLNPQKDKIIEIAVLITNGNLELVDDGIQYIIRAEKSLLDGMDEWCTKQHG 74

Query: 63  IT--PQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFYRN--- 113
            +   Q  LR         + +  +           ++  N++  D  +           
Sbjct: 75  QSGLTQACLRSPYTTEYVKKEVLAYIKKWIPRQRVGVLAGNSVHVDRTFLAAEMPEIVDW 134

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
            +           +R  +     + Y       +W        +               +
Sbjct: 135 LHYRIIDVSSVKVARLSVSPFDVSSYELQELSRRWFPNKVPPKNP-------------ES 181

Query: 174 AHDAKADVYATLALVWLIREK 194
           +H A  D+  ++  +   RE 
Sbjct: 182 SHRALDDIQGSIQELKWYREN 202


>gi|260881524|ref|ZP_05404631.2| exonuclease [Mitsuokella multacida DSM 20544]
 gi|260848674|gb|EEX68681.1| exonuclease [Mitsuokella multacida DSM 20544]
          Length = 196

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 68/226 (30%), Gaps = 32/226 (14%)

Query: 1   MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M  +F   D+ET  G   A D     A V   R    ++S       PA+ Y        
Sbjct: 1   MM-NFTAIDFETATG---ARDSACSVA-VVTIRAGALVDSYYTLIQPPANRY--SYFNTK 53

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I G+T           A+F+    +  +     ++  +N +FD    R+   R    +  
Sbjct: 54  IHGLTEADTANA----ADFAGIWPELEAKLEGQLVVAHNAKFDMSVLRSCLARYGLQAPA 109

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
           +S+       D + + R  +                 + KL  +     + H   HDA  
Sbjct: 110 FSY------CDTVAIARRAW-------------PNLANHKLGTVGAYLNL-HFRHHDALE 149

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
           D  A  A+      +               ++       + +  + 
Sbjct: 150 DAKACAAIPIRAGLELADASMEALVQHLGVRVEAFESHGSASCGLF 195


>gi|42568689|ref|NP_200947.3| exonuclease family protein [Arabidopsis thaliana]
 gi|111074224|gb|ABH04485.1| At5g61390 [Arabidopsis thaliana]
 gi|332010078|gb|AED97461.1| exonuclease-like protein [Arabidopsis thaliana]
          Length = 487

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 27/191 (14%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET      + +     +F  + V  ++  ++++  V   +PA+  L  P +V  
Sbjct: 16  IAFFDVETT-IPFRVGQGYAILEFGSILVCPKKLVELKNYSVL-VRPANLNLITPRSVKC 73

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +      +  A+ +  ++           G+N ++FD    R  F     D    
Sbjct: 74  NGIKREDVESA-LTFADIADTVYDIL--HGRIWAGHNILKFDCPRIREAFAEIGRDPPE- 129

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L ++                   A   K+  LA   G+ +   H +  D
Sbjct: 130 ----PKGTIDSLALL------------TQRFGRRAGDMKMATLATYFGLGN-QTHRSLDD 172

Query: 181 VYATLALVWLI 191
           V     ++   
Sbjct: 173 VRMNFEVLKYC 183


>gi|309702068|emb|CBJ01382.1| exodeoxyribonuclease X [Escherichia coli ETEC H10407]
 gi|323937102|gb|EGB33382.1| exonuclease [Escherichia coli E1520]
          Length = 220

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLGSMSPELRLTLKH 215


>gi|307244994|ref|ZP_07527091.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306854159|gb|EFM86367.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 218

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 66/217 (30%), Gaps = 30/217 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D     + +    F  +P +    +P+++   G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 63  ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNF-- 114
           I     LR  V E     E  + + +          +I  +N  FD  + +    R    
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQAFVQAAVKRINAK 140

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            D +        +        + +   +    + P                        A
Sbjct: 141 RDPFHPFAMFDTATLAGFMFGQTVLVKACQMAKIPFDGK-------------------QA 181

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
           H A  D   T  L   +  +   L  +     +++ +
Sbjct: 182 HSALYDTEKTTELFCAMVNRLKGLGGFPLVSDSESNV 218


>gi|330829910|ref|YP_004392862.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
 gi|328805046|gb|AEB50245.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
          Length = 208

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 45/170 (26%), Gaps = 20/170 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET   D           VR+  Q  ++ + E    K         ++V I G+  
Sbjct: 32  VALDFETTSLDPEQAEIVSIGAVRI--QGNRLLTGEALAIKVQPPASLTGQSVVIHGLRH 89

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q     G+      R +  F       ++GY+               N      W     
Sbjct: 90  QDLQ-QGMTLEAALRLLLHFI--GPRELVGYHVAYDLRIL-------NLACQKLWELTLP 139

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               ++  +                  D A    L  +     +  + AH
Sbjct: 140 QRGIEVSQLYHDHLYRRY--------PDAAIDLHLSAICSHLELPSLPAH 181


>gi|28199095|ref|NP_779409.1| ribonuclease T [Xylella fastidiosa Temecula1]
 gi|32129969|sp|Q87C86|RNT_XYLFT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|28057193|gb|AAO29058.1| ribonuclease T [Xylella fastidiosa Temecula1]
          Length = 211

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 53/207 (25%), Gaps = 31/207 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEK-IESTEVFFCKPADDYL 52
           M+  F     V+ D ET G +       + A + +  D                PA    
Sbjct: 14  MSQRFRGYLPVVVDVETGGFNWNHHALLEIACIPIEMDDTGRLYPGEVTSTHVIPAPGTD 73

Query: 53  PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYS 106
            DP+++ +TGI        A  + +        +            I+  +N  FD  + 
Sbjct: 74  IDPKSLEVTGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFL 133

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R  Y    +   +      L  +       +                     A  
Sbjct: 134 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQ-----------------AAG 176

Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
                 +AH A  D   T  L   I  
Sbjct: 177 LDWNAADAHSAVYDAEKTAHLFCTITN 203


>gi|88800698|ref|ZP_01116257.1| ribonuclease T [Reinekea sp. MED297]
 gi|88776562|gb|EAR07778.1| ribonuclease T [Reinekea sp. MED297]
          Length = 215

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 63/200 (31%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV---RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V     D  W + +    F  +P +    +  A+  TG
Sbjct: 11  VVIDVETAGFNAKTDALLEIAAVTLKMTDDGWLEQDECLFFNVEPFEGANLEQAALDFTG 70

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +  + I +              I+  +N  FD  +      R    
Sbjct: 71  IDPHNPLRGAVDEGDALKEIFKMIRKGMKAAGCKRAILVGHNANFDHNFLFAAAERANNK 130

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    +   D            +             L+    A+G+E     A
Sbjct: 131 ------RNPFHPFTTFDTAALSALVYGQTV-------------LKRACQASGVEFSDKEA 171

Query: 175 HDAKADVYATLALVWLIREK 194
           H+A+ D   T  L   +  +
Sbjct: 172 HNAEYDTRKTAELFCNMINQ 191


>gi|300904709|ref|ZP_07122542.1| exonuclease [Escherichia coli MS 84-1]
 gi|301304416|ref|ZP_07210528.1| exonuclease [Escherichia coli MS 124-1]
 gi|300403376|gb|EFJ86914.1| exonuclease [Escherichia coli MS 84-1]
 gi|300840267|gb|EFK68027.1| exonuclease [Escherichia coli MS 124-1]
 gi|315257344|gb|EFU37312.1| exonuclease [Escherichia coli MS 85-1]
          Length = 220

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIVNPMSQL---VRPDRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|116618623|ref|YP_818994.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097470|gb|ABJ62621.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 177

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +         A   V    + ++           +         I G+
Sbjct: 2   NFVAMDFET--ANREKHSAVSIALAIVRDN-QVVDKFYSL---IKPETTFSSYNTAIHGL 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q          E  + I  FF+     ++  +N  FD+   +        D       
Sbjct: 56  HRQDVADAPK-FPEVWQTISPFFTENK--LVVAHNASFDNSILKGTLQYYDIDE------ 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + LLD ++      P+              KL  +A   GI   + H+A  D  A
Sbjct: 107 ---PHYLLLDTVQTSRKLFPNFEN----------HKLNTVAGNLGITLDHHHNALDDAVA 153

Query: 184 TLALVWLIREK 194
              ++      
Sbjct: 154 AANILIYESNH 164


>gi|254489693|ref|ZP_05102889.1| exonuclease superfamily [Methylophaga thiooxidans DMS010]
 gi|224465102|gb|EEF81355.1| exonuclease superfamily [Methylophaga thiooxydans DMS010]
          Length = 185

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVF 59
            N+ +  D E  G D   D   + A +  D +   +    +F     D  L   +     
Sbjct: 5   KNNLIWIDLEMTGLDTNNDYIIEIATIVTDAKLNVLAEGPIFAIHQQDAILDSMDEWNTR 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V EAE  ++  +F           +  N+I  D  +         
Sbjct: 65  QHGKSGLTQRVKDSTVTEAEAEQKTIEFLRKYVPAGVSPMCGNSICQDRRFLARCMPELE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 AFFHYR 130


>gi|127513296|ref|YP_001094493.1| exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
 gi|126638591|gb|ABO24234.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
          Length = 226

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 47/180 (26%), Gaps = 20/180 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D E  G + + D+      V + +    +   +    +         ++  I GI 
Sbjct: 43  LLAIDLEMTGLNASFDQILSIGVVPIRQGQLILSEAQHKLVQIEGSV---GQSATIHGIL 99

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E   +     F SV    ++  ++   D  + ++                
Sbjct: 100 DTHLDAALTPEQAMAW----FLSVSEGMVLVAHHAPLDLAFLQSGLQACL---------G 146

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   +D +          +            +L       G+    AH+A  D  A 
Sbjct: 147 EKPRLLAIDTL----LLEKQRLLRQQEHLQEGCLRLGRSRARYGLPVYAAHNALIDALAC 202


>gi|161833722|ref|YP_001597918.1| putative DNA polymerase III subunit alpha (dnaE)/DNA polymerase
           III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia
           muelleri GWSS]
 gi|152206212|gb|ABS30522.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase
           III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia
           muelleri GWSS]
          Length = 1411

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 28/199 (14%)

Query: 5   FVIYDYETFGRDVALD------------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           ++I+D ET G  +  D            R  + + V +D + + I   + +  KP    +
Sbjct: 2   YIIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLI-ELKDYIIKPEGYEI 60

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           P   +  I GI+ + A+  G+         +      N   +  +N+ FD       F R
Sbjct: 61  PF-NSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSN--FLIGHNVFFDIKIVCAEFIR 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                  +     +++   ++          +  +WP+         L +L      +  
Sbjct: 118 INKKISFFKKKIIDTKEISIN---YCAIKMGEKFKWPT---------LTELYKKLFNDTF 165

Query: 173 NAHDAKADVYATLALVWLI 191
            AHD+K+DV AT    + +
Sbjct: 166 IAHDSKSDVLATTKCFFEL 184


>gi|307243536|ref|ZP_07525684.1| exonuclease [Peptostreptococcus stomatis DSM 17678]
 gi|306493092|gb|EFM65097.1| exonuclease [Peptostreptococcus stomatis DSM 17678]
          Length = 460

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 75/274 (27%), Gaps = 55/274 (20%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-------- 52
           +   +V  D E  G +  L+   + A ++V R    I+        P  + L        
Sbjct: 15  LPETYVAIDLELTG-NYCLNYIIELAALKV-RDGVIIDEFSSLVRPPDYNVLEKRKGSKS 72

Query: 53  --------------------PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC 92
                                D     +TGI+ +        E    ++ H F       
Sbjct: 73  GYKAKKIKSTVNVDGQEIYYIDEFIEDLTGISNEMIYSA-EDETHVIKKFHDFI---GDL 128

Query: 93  IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152
            +  + +  D    ++ F R     +           D  D+    Y             
Sbjct: 129 PVIGHGMGNDIREIKDSFDRILDKDFEN------PCIDTFDLGEFAYG------------ 170

Query: 153 DGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
                F L  L    GI++ + H A++D Y T      + +     +   Y       + 
Sbjct: 171 ---EKFSLIRLCDHLGIDNSDVHRARSDAYRTHLSYLNLLDDLDSKYGETYSQEFFQWMD 227

Query: 213 KLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246
           + +  QN      V     A   +    A +  H
Sbjct: 228 RALMKQNRILKNRVMRSINAKNWSLKRQAYLEDH 261


>gi|148652365|ref|YP_001279458.1| DNA polymerase III subunit epsilon [Psychrobacter sp. PRwf-1]
 gi|148571449|gb|ABQ93508.1| Exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           PRwf-1]
          Length = 201

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 19/183 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D E  G +   +     A + +      I++ +          +P  + + I G+ P
Sbjct: 34  VAIDCEMSGLNAKKNHLLSIAAIHI--NGSVIDTGQGLHLICRPPVMPTKDTIIIHGLRP 91

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                 G+   +   ++  F    N  I+G+                +F +    ++   
Sbjct: 92  IDVEN-GLSYEQMLAKLLPFI--GNRPIVGF----------CPQLDISFLNPLVKAYMGT 138

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                ++D+               ++     S  L  +     +  + AHDA  D   T 
Sbjct: 139 YLPNPVIDI----RTLYNRYSGNRTQGIPHQSSHLSAICQQLKLPDMAAHDAYNDAIMTA 194

Query: 186 ALV 188
              
Sbjct: 195 MAF 197


>gi|93005267|ref|YP_579704.1| DNA polymerase III subunit epsilon [Psychrobacter cryohalolentis
           K5]
 gi|92392945|gb|ABE74220.1| Exonuclease [Psychrobacter cryohalolentis K5]
          Length = 203

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 19/187 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D E  G +         A + ++       +     C+P    +P+ + + I G+  
Sbjct: 36  VAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPP--VMPEGDTIVIHGLRT 93

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  +   E    +  F S  N  ++G+                 F +     +   
Sbjct: 94  ADVEHA-MSYDEMLGLLLPFIS--NRPLVGF----------CPQIDVGFLNPLVKHYMGT 140

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           +   +++D+           +   S+   + +  L  +     I  +  HDA  D   T 
Sbjct: 141 HLPNEIIDI----RPLYSRRMMGRSQGLSSQAQHLNSILAHYNIPELGTHDAYNDAIMTA 196

Query: 186 ALVWLIR 192
                +R
Sbjct: 197 MAFLHMR 203


>gi|288934625|ref|YP_003438684.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola
           At-22]
 gi|290508826|ref|ZP_06548197.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55]
 gi|288889334|gb|ADC57652.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola
           At-22]
 gi|289778220|gb|EFD86217.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55]
          Length = 219

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 67/265 (25%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G         + A V +        +      +P  D    P+A+ I  IT +
Sbjct: 4   VIDTETCGL---QGGIVEIASVDI-VDGRIT-NPMSHLVRP--DRPITPQAMAIHRITEE 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E             +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-EIIPH------YLGSPWYVAHNASFDRRV---------LPEMSGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R ++          S      S KL           ++ H A  D Y T A
Sbjct: 97  --ICTMKLARRLWPGIK-----YSNMGLYKSRKLNVATP----PGLHHHRALYDCYITAA 145

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246
           L+  I        + + D   +  L                  F   +     +A +A +
Sbjct: 146 LLLDIINVSGWTPDEMADITGRPALLT---------------TFTFGKYRGKAVAEIAEN 190

Query: 247 -PRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +          +   L  
Sbjct: 191 DPGYLRWLFNNLDRMSPELRLTLKH 215


>gi|162147891|ref|YP_001602352.1| exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542508|ref|YP_002274737.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786468|emb|CAP56050.1| putative exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209530185|gb|ACI50122.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 269

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 54/194 (27%), Gaps = 33/194 (17%)

Query: 5   FV-IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-----ADDYLPDPEAV 58
           FV + D ET GR+ A     +     V R     + T      P            P+ +
Sbjct: 15  FVRVIDLETSGRNAADGGIVEIGWQDVARDA---DGTWALAGPPGARLTHPGGPITPQTM 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I  IT           AE +  I           +  +   F+                
Sbjct: 72  AIHHITDAHVRDAP-PFAEIAPDILH--PADRPAAMAAHRASFEQ--------------- 113

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH---VNAH 175
              W  G+    L   +  I  +      WP  + G ++  L+      G+E       H
Sbjct: 114 --GWIRGSLPPALTTGLHWICTYKCALRLWP-DEPGHSNQGLRHSRRPAGLERALGDPPH 170

Query: 176 DAKADVYATLALVW 189
            A  D Y T   + 
Sbjct: 171 RAGPDAYVTAHHLR 184


>gi|24374384|ref|NP_718427.1| exonuclease [Shewanella oneidensis MR-1]
 gi|24348949|gb|AAN55871.1|AE015724_4 exonuclease [Shewanella oneidensis MR-1]
          Length = 181

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 41/172 (23%), Gaps = 20/172 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D E  G D   D+      V ++     +   +    +         ++  I GI     
Sbjct: 2   DLEMTGLDPFKDQILSIGLVPIENGAIPLSHAQQKLVQIRGSV---GQSAIIHGILDNHL 58

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
            +  V   E       F       ++  ++   D  + +            +        
Sbjct: 59  TQA-VSIEEAMAW---FMEQTRGRVLVAHHSPLDCRFLQQDILT------IYHQAVLLPA 108

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            D L             +          S +L       G+    AH A  D
Sbjct: 109 IDTL-------VLEKQRLLREHSVLKEGSLRLGACRERYGLPIYGAHSALTD 153


>gi|237702502|ref|ZP_04532983.1| yacC [Escherichia sp. 3_2_53FAA]
 gi|226903283|gb|EEH89542.1| yacC [Escherichia sp. 3_2_53FAA]
          Length = 282

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 51/191 (26%), Gaps = 26/191 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
            + +  +++    Y             +   +  L   A   G      AH A AD    
Sbjct: 210 LTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGQAHSAIADARMA 259

Query: 185 LALVWLIREKK 195
             +V  I    
Sbjct: 260 AGVVNAIAAYH 270


>gi|170755896|ref|YP_001781901.1| exonuclease family protein [Clostridium botulinum B1 str. Okra]
 gi|169121108|gb|ACA44944.1| exonuclease family protein [Clostridium botulinum B1 str. Okra]
          Length = 253

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 69/207 (33%), Gaps = 30/207 (14%)

Query: 4   HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           +++I+D E    +   +            Q   V+++     I++      KP      +
Sbjct: 2   NYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAVKLNENLTTIDTFNAL-VKPEIYSNLN 57

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P    +T +T     +      E  +   +F +        +      + +   ++Y   
Sbjct: 58  PFIKNLTNLTMDSLNKA-KPFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYELD 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +S    + N             + A++   + +P   +   S  ++   L +  ++ + 
Sbjct: 117 TESIPKEYIN-------------VQAYTGKYLNFPKSINVGLSNAVE---LFHITKNNDF 160

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H+A  D + T  +   I  +K K   Y
Sbjct: 161 HNAFNDAFYTAKIFKKIYSEKIKTKIY 187


>gi|153003684|ref|YP_001378009.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027257|gb|ABS25025.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 200

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 51/191 (26%), Gaps = 12/191 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +   D ET G D   D       V +     ++  +     +P       P+++    +
Sbjct: 12  TYWALDLETGGLDPKSDPILAVGMVPIRGGAIRLAESYASLVRPDVREGIRPDSMRAHHL 71

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+       +E     +I          ++ +N      +  R                
Sbjct: 72  VPRDVAEAPPLET-VLDQIDARIRE--GALLVHNAALDVSFLRRAYRRAGRRWP------ 122

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
            G    D + ++      +      P          L        +    +HDA  D  A
Sbjct: 123 -GPPVVDTVVLLLKAAKRARFVD--PDATGIEPELNLAAARRRAKLPEYASHDALTDAIA 179

Query: 184 TLALVWLIREK 194
              L  ++R +
Sbjct: 180 AAELFLVLRRR 190


>gi|332882889|ref|ZP_08450497.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679166|gb|EGJ52155.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 182

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 51/190 (26%), Gaps = 27/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V R  E          +P  +Y  +     + 
Sbjct: 19  MKDFAAIDFET--ANGQRSSICSVGLVVV-RDGEITIRHY-RLVRPYPNY-YNYWNTQVH 73

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ Q          E  R I           +  +N  FD+   +  F     +     
Sbjct: 74  GMSFQDTAHA-APFPEVWREIIPLIE---GLPLVAHNRPFDEGCLKAAFQAYGME----- 124

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +     +RA                   + +LQ +AL  G +    H A  D 
Sbjct: 125 ----YPGYPFHCTLRASRLAF---------GRDLPNHQLQTVALRCGYDLTQHHHALTDA 171

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 172 EACARIALKI 181


>gi|167957555|ref|ZP_02544629.1| oligoribonuclease [candidate division TM7 single-cell isolate TM7c]
          Length = 182

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 17/129 (13%)

Query: 1   MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL------- 52
           M+    +  D E  G D   D+  + A +  D  + ++   E    K  D  +       
Sbjct: 1   MSKAKILWVDLEMTGLDPTKDKILEVAAIATDWDFNEVGRFES-AVKVDDSLISARFKAG 59

Query: 53  -------PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
                  PD     I   +  K      VE +  +   ++F+     ++  N+I  D  +
Sbjct: 60  HNFWDANPDARDGLILQNSQAKLTSK-QVEEDILKFTKEYFTHDEPILLAGNSIHQDRKF 118

Query: 106 SRNIFYRNF 114
               +    
Sbjct: 119 IDREWPNLG 127


>gi|59713532|ref|YP_206307.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
 gi|59481780|gb|AAW87419.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 259

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 58/199 (29%), Gaps = 31/199 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-------- 56
           F + D+ET G +   D       V +      I+ +        +      E        
Sbjct: 66  FTVVDFETSGLNPKTDHIVSVGWVHIIDG--VIKLSSAQHHIINEPTSISAEDGHEEREH 123

Query: 57  -AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            A  +  I P++  + G+   E       FFS   + I+  +    +  +          
Sbjct: 124 IARSLHHILPEQ-QKMGISLEEAME---CFFSNLPSNILVVHGATIEQRFLEQFILSLQL 179

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
            +    W         LD +R              ++     F+L  L     +    AH
Sbjct: 180 PNLPIIW---------LDTLRIEQ-------NTIQQNRYQRDFRLFSLRRQYKLPDYPAH 223

Query: 176 DAKADVYATLALVWLIREK 194
            A  D  +T  L    +++
Sbjct: 224 HALVDAISTAELFLAQKKR 242


>gi|83311148|ref|YP_421412.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82945989|dbj|BAE50853.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 216

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 45/220 (20%), Gaps = 39/220 (17%)

Query: 5   FVIYDYETFGRD-VALDRP-------------AQFAGV--RVDRQWEKIESTEVFFCKPA 48
            +  D ET G                       +   V         K      +  +  
Sbjct: 14  LIAIDAETTGFRVPTAAEIKKMPKGLRLPGVMIEIGCVELLRGEDGWKTGE--SWHRRIQ 71

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                   ++ + GITP +         +       F       ++  ++   +  +   
Sbjct: 72  PGGPIAKASIAVHGITPAELKDAPQ-FRDVLDEFETFI---GQDMLLAHSAENEIEFLNF 127

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN- 167
            + R               R    DV+ +   F            G     L  L     
Sbjct: 128 EYARVG-------------RCGFDDVIFSDNDFVCTQELSRQFFPGVPG-SLDVLCDRLW 173

Query: 168 --GIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205
               +    H A  D   T      +     +       +
Sbjct: 174 IDRSDRFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSF 213


>gi|307253947|ref|ZP_07535799.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307256208|ref|ZP_07537995.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307258402|ref|ZP_07540143.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306863151|gb|EFM95093.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865389|gb|EFM97285.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306867586|gb|EFM99433.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 218

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 66/217 (30%), Gaps = 30/217 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D     + +    F  +P +    +P+++   G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 63  ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNF-- 114
           I     LR  V E     E  + + +          +I  +N  FD  + +    R    
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQAFVQAAVKRINAK 140

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            D +        +        + +   +    + P                        A
Sbjct: 141 RDPFHPFAMFDTATLAGFMFGQTVLVKACQMAKIPFDGK-------------------QA 181

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
           H A  D   T  L   +  +   L  +     +++ +
Sbjct: 182 HSALYDTEKTTELFCAMVNRLKDLGGFPLVSDSESNV 218


>gi|307249394|ref|ZP_07531386.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858580|gb|EFM90644.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 218

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 66/217 (30%), Gaps = 30/217 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D     + +    F  +P +    +P+++   G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 63  ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNF-- 114
           I     LR  V E     E  + + +          +I  +N  FD  + +    R    
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKRINAK 140

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            D +        +        + +   +    + P                        A
Sbjct: 141 RDPFHPFAMFDTATLTGFMYGQTVLVKACQMAKIPFDGK-------------------QA 181

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
           H A  D   T  L   +  +   L  +     +++ +
Sbjct: 182 HSALYDTEKTTELFCAMVNRLKDLGGFPLVSDSESNV 218


>gi|229512381|ref|ZP_04401856.1| oligoribonuclease [Vibrio cholerae TMA 21]
 gi|229526905|ref|ZP_04416308.1| oligoribonuclease [Vibrio cholerae bv. albensis VL426]
 gi|229526997|ref|ZP_04416393.1| oligoribonuclease [Vibrio cholerae 12129(1)]
 gi|262172561|ref|ZP_06040239.1| oligoribonuclease [Vibrio mimicus MB-451]
 gi|229335520|gb|EEO01001.1| oligoribonuclease [Vibrio cholerae 12129(1)]
 gi|229336074|gb|EEO01093.1| oligoribonuclease [Vibrio cholerae bv. albensis VL426]
 gi|229350596|gb|EEO15541.1| oligoribonuclease [Vibrio cholerae TMA 21]
 gi|261893637|gb|EEY39623.1| oligoribonuclease [Vibrio mimicus MB-451]
          Length = 181

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  +     
Sbjct: 6   QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +      +  +  V E E   +   F           I  N+I  D  +      
Sbjct: 66  HTASGL----VARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 122 RLEAYFHYR 130


>gi|119474667|ref|ZP_01615020.1| putative exonuclease [marine gamma proteobacterium HTCC2143]
 gi|119450870|gb|EAW32103.1| putative exonuclease [marine gamma proteobacterium HTCC2143]
          Length = 255

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 51/193 (26%), Gaps = 27/193 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           VI D ET G      +  +   +  D +   +        +          A  + GI  
Sbjct: 43  VILDTETTGLS-ETAQLIEICIL--DFEGNIL-----LNERVKPSVKVSKGAREVHGIKA 94

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          +  R   +  +     I+ YN        ++     N            
Sbjct: 95  RDLKSC-RSWPDVYRDYVEVTA--GKNIVAYNAKFDRRIITQTCRAFNL--------TMK 143

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
             +W  L +  +             R       KL   A       + +AH A  D   T
Sbjct: 144 KRKWYCLMLAFSELVGRT-------RYGDYKWHKLSTAAWVFDVPPNDDAHSAYGDCETT 196

Query: 185 LALVWLIREKKPK 197
           LA+     +  P+
Sbjct: 197 LAVAKEFLQFDPE 209


>gi|94984265|ref|YP_603629.1| exonuclease, RNase T and DNA polymerase III [Deinococcus
           geothermalis DSM 11300]
 gi|94554546|gb|ABF44460.1| exonuclease domain in DNA-polymerase alpha and epsilon chain,
           ribonuclease T [Deinococcus geothermalis DSM 11300]
          Length = 188

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 57/185 (30%), Gaps = 18/185 (9%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +T   +  D ET GRD A         V +  Q E          +  + Y  + EA+ +
Sbjct: 10  LTQPIIFVDTETGGRDPARHPLLTVGLVTLTPQGEVT-RPLHLRVR-HEHYEVEEEAMAV 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI             E +  +  +       ++G +N+ +D  + R           + 
Sbjct: 68  NGIDLATHHATAQAPEEVAEAVRAYARAVGRVMLGGHNLAYDLGFLRW-----LLPDLKS 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            +  G     L           P  +  P          L  LA   G+ +  AHDA  D
Sbjct: 123 IFRRGRVDTKLTAQFLLHAGILPRKVGTP----------LDQLAKYFGLAY-QAHDALED 171

Query: 181 VYATL 185
              T 
Sbjct: 172 ARVTA 176


>gi|254506426|ref|ZP_05118568.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16]
 gi|219550600|gb|EED27583.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16]
          Length = 210

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 50/193 (25%), Gaps = 20/193 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET   D         A  ++            F  +       D  +V I  + 
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSRP--FEVRLRAPQSLDSSSVKIHQMR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q  +  G+ E +   ++ +F    N  ++GY+                 +       + 
Sbjct: 88  HQDLVD-GLDEKQALIKLLEFV--GNRPLVGYHIRYDKKILDLACRRHLGFPLPNPLIEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L+                   +      L  +     +   + HDA  D  + 
Sbjct: 145 SQIYHDKLE---------------RHLPNAYFDLSLDAICKHLDLPIQDKHDALQDAISA 189

Query: 185 LALVWLIREKKPK 197
             +   + +    
Sbjct: 190 ALVFVRLTKGDLP 202


>gi|268611881|ref|ZP_06145608.1| hypothetical protein RflaF_20541 [Ruminococcus flavefaciens FD-1]
          Length = 176

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 30/192 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              ++++D ET   + A DR +      V    + + +          +   D     +T
Sbjct: 1   MAVYIVFDVET--PNHANDRMSAIGITAVKDN-KIVANYFSL---VDPETHFDSFNTQLT 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI  +K        AE  ++I    S     I+  +N  FD         R+   SY  +
Sbjct: 55  GIDAEKVKDAP-NFAELWKKIEPIMSKG---ILVAHNAVFDMSVL-----RSCLRSYGIT 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W         + + R              R        L  +    GI   + H A +D 
Sbjct: 106 WKPTAEYLCTVQIGR--------------RVLPNMKHNLNVMCDHYGIALDH-HQADSDA 150

Query: 182 YATLALVWLIRE 193
           +A   ++    E
Sbjct: 151 HACAEILLRYME 162


>gi|145299434|ref|YP_001142275.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852206|gb|ABO90527.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 223

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D       +    F  +P +    +  A+  TG
Sbjct: 18  VVIDVETAGFNARTDALLEIAAYTLKMDEDGWLAPDQVFHFHVEPFEGANLEKAALEFTG 77

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +        S  N  II  +N  FD  +      R    
Sbjct: 78  IDPFNPLRGAVSEKEALTEIFKGIRKGMKESDCNRAIIVAHNATFDHGFVMAAAERAGLK 137

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +       +                     +     ++  AH 
Sbjct: 138 RNPFHPFATFDTAALSGLALGQTVLAKACQ-----------------SARIPFDNKEAHS 180

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 181 ALYDTERTTELFCHIVNR 198


>gi|116492274|ref|YP_804009.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Pediococcus pentosaceus ATCC 25745]
 gi|116102424|gb|ABJ67567.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Pediococcus pentosaceus ATCC 25745]
          Length = 178

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET             A   V +     +     +     +   +   V + GI
Sbjct: 2   NFIAMDFET--AAPTRASACSIALTVV-QNDVITDE---LYSLINPETEFNWRNVQVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        E    + QFF+     ++  +N  FD+   +    R         + 
Sbjct: 56  HQADVSDAP-TFPELWPVVKQFFT--PDKLVVAHNATFDNSVLKKTLER---------YQ 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  LD +R   +F PD              KL  +    GI+  + H+A  D  A
Sbjct: 104 INRLPYQTLDTLRTSKSFYPDYTN----------HKLNTICDNLGIDLQHHHNALDDSRA 153

Query: 184 TLALVWLIREK 194
              ++     +
Sbjct: 154 CANILLHQEHQ 164


>gi|227541474|ref|ZP_03971523.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182756|gb|EEI63728.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 427

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 53/192 (27%), Gaps = 27/192 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   + +     Q A V+V    + ++        P        E  ++ 
Sbjct: 251 KPKFVAVDFET--ANRSSRSACQIAMVKV-EYGQIVDRFSTLLKPPPGHDEF--EFTYLH 305

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +               I  F        +  +N  FD     +       DSY  +
Sbjct: 306 GISARDVADAP-SWKFVEPYIRAFVDR---LPVYAHNASFDRGVWVS------MDSYYGT 355

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +      + +     +          A  F+L              H A +D 
Sbjct: 356 RTLPEEFYCSYRTAKRLIPGLENYKLPTVTKAIAPWFRLDH------------HRADSDA 403

Query: 182 YATLALVWLIRE 193
            A   +V  ++ 
Sbjct: 404 EACALIVIGLQM 415


>gi|114047088|ref|YP_737638.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7]
 gi|113888530|gb|ABI42581.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7]
          Length = 228

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 43/176 (24%), Gaps = 20/176 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D E  G D   D+      V ++     + S +    +         ++  I GI     
Sbjct: 46  DLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLVQIQGSV---GQSATIHGILDNHL 102

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
               V   E       F S     I+  ++   D  + +            +        
Sbjct: 103 TEA-VSIEEAMAW---FVSQTRGHILVAHHSPLDCRFLQQDILS------IYHQVVVIPA 152

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            D L             +          S +L       G+    AH A  D  A 
Sbjct: 153 IDTL-------LLEKHRLLREHSVLKEGSLRLGACRERYGLPIYGAHSALTDALAC 201


>gi|258624475|ref|ZP_05719421.1| oligoribonuclease [Vibrio mimicus VM603]
 gi|258583224|gb|EEW08027.1| oligoribonuclease [Vibrio mimicus VM603]
          Length = 181

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  +     
Sbjct: 6   QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +      +  +  V E E   +   F           I  N+I  D  +      
Sbjct: 66  HTASGL----VARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYRHMP 121

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 122 RLEAYFHYR 130


>gi|168241502|ref|ZP_02666434.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194450291|ref|YP_002045931.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194408595|gb|ACF68814.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205339659|gb|EDZ26423.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 232

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +            +   + +N            F R         W    
Sbjct: 57  MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
              LI   +   +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FSFGKYRGKAVSEVAKR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     +    +   L  
Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215


>gi|170744636|ref|YP_001773291.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168198910|gb|ACA20857.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 296

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 32/124 (25%), Gaps = 7/124 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63
           ++ D ET G D A D   +   V     Q  +I      F +      P PEA   +TGI
Sbjct: 42  LVLDTETTGLDPACDEVIELGIVAFTYGQSGRIYRVRHRFNQLHQPGKPIPEAVTRLTGI 101

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T                      +     +I +N             +    +       
Sbjct: 102 TDADVAGK-----RIDDAAVAALAAKARVVIAHNARFDRRMCEVRWPFFAELNWACSCHQ 156

Query: 124 NGNS 127
               
Sbjct: 157 IDWR 160


>gi|27468497|ref|NP_765134.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867358|ref|YP_189001.1| exonuclease [Staphylococcus epidermidis RP62A]
 gi|251809901|ref|ZP_04824374.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874556|ref|ZP_06283441.1| exonuclease [Staphylococcus epidermidis SK135]
 gi|293367792|ref|ZP_06614441.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316044|gb|AAO05178.1|AE016749_124 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
 gi|57638016|gb|AAW54804.1| exonuclease [Staphylococcus epidermidis RP62A]
 gi|251806566|gb|EES59223.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296695|gb|EFA89204.1| exonuclease [Staphylococcus epidermidis SK135]
 gi|291318131|gb|EFE58528.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726906|gb|EGG63364.1| exonuclease [Staphylococcus epidermidis VCU144]
 gi|329734711|gb|EGG71017.1| exonuclease [Staphylococcus epidermidis VCU045]
 gi|329734804|gb|EGG71109.1| exonuclease [Staphylococcus epidermidis VCU028]
          Length = 184

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 57/211 (27%), Gaps = 34/211 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N FV  D+ET   +           V+V    +  ES                  + + 
Sbjct: 3   QNAFVALDFET--ANSKRTSICSVGMVKVIDN-QITESFHTL---VNPFDYFTETNITVH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+               + +F        +  +N  FD          +  D+   +
Sbjct: 57  GIHPEDVQDAPG-FKHVYPYMLKFIDQ---LPVVAHNAAFDMNVLHQSLKSHNIDTPSLT 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD- 180
           +                        Q   R   A  + L+ L     ++    HDA  D 
Sbjct: 113 Y--------------------FCSYQLAKRTINAYRYGLKHLMNHYHLDFHGHHDALNDA 152

Query: 181 ---VYATLALVWLIREKKPKLFEYLYDYRNK 208
                 T  L+    + +  L  Y  + ++K
Sbjct: 153 KACAMITYRLLKHYDDLQSMLSIYGKNLKDK 183


>gi|16272277|ref|NP_438489.1| ribonuclease T [Haemophilus influenzae Rd KW20]
 gi|260581209|ref|ZP_05849028.1| ribonuclease T [Haemophilus influenzae RdAW]
 gi|1173107|sp|P44639|RNT_HAEIN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|1573293|gb|AAC21987.1| ribonuclease T (rnt) [Haemophilus influenzae Rd KW20]
 gi|260092134|gb|EEW76078.1| ribonuclease T [Haemophilus influenzae RdAW]
          Length = 229

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 55/198 (27%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  KP +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q        +     II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +M                            A     +   AH 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAKLFCYMVNH 203


>gi|237749183|ref|ZP_04579663.1| oligoribonuclease [Oxalobacter formigenes OXCC13]
 gi|229380545|gb|EEO30636.1| oligoribonuclease [Oxalobacter formigenes OXCC13]
          Length = 206

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 35/124 (28%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
           + +  D E  G D   DR  + A V  D     +    V+    +D  L   +A      
Sbjct: 32  NLIWVDLEMTGLDPETDRIIEVAVVVTDANLNVLAEGPVYAIHQSDAVLNGMDAWNKGTH 91

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +    +     + EA     +  F           +  N I  D  +      R    
Sbjct: 92  GRSGLIDRVKASNITEAMAEDALIDFLIDYVPRGKSPMCGNTICQDRRFMAKTMPRLEAF 151

Query: 117 SYRW 120
            +  
Sbjct: 152 FHYR 155


>gi|257454452|ref|ZP_05619714.1| ribonuclease T [Enhydrobacter aerosaccus SK60]
 gi|257448218|gb|EEV23199.1| ribonuclease T [Enhydrobacter aerosaccus SK60]
          Length = 242

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 68/218 (31%), Gaps = 31/218 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A + +   D              +P +    +  A+  TG
Sbjct: 20  VVVDVETAGFNPKTDALLEIACIPILMDDTGLFYPGEAVNAHIEPFEGANLEARALQFTG 79

Query: 63  ITPQKALRDGVVEAE--FSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P   +R  + E E    RRI ++            CI+  +N  FD  +   +  R  
Sbjct: 80  INPHSPMRKAIAEDEKTAIRRIFKYLKTVRQSTQCTKCILVGHNAHFDLSFLNALIERTN 139

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172
                    +   ++ +LD +          +             L       G+E    
Sbjct: 140 -----SKNQSQFHQFSVLDTVTLSALAFGQTV-------------LARACKLAGLEFDGN 181

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            AH A  D   T  L   I    P L   L     K++
Sbjct: 182 EAHSALYDTQKTAELFCYILNNYPMLTPNLASDEAKDE 219


>gi|53728911|ref|ZP_00134639.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207670|ref|YP_001052895.1| ribonuclease T [Actinobacillus pleuropneumoniae L20]
 gi|165975638|ref|YP_001651231.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303250752|ref|ZP_07336948.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307251713|ref|ZP_07533617.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|166228560|sp|A3MYQ4|RNT_ACTP2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|126096462|gb|ABN73290.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|165875739|gb|ABY68787.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302650422|gb|EFL80582.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860799|gb|EFM92808.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 218

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 26/215 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D     + +    F  +P +    +P+++   G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 63  ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E     E  + + +          +I  +N  FD  + +    R    
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKR---- 136

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +  +    + + D            +   +       F           +   AH 
Sbjct: 137 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKIPF-----------DGKQAHS 183

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
           A  D   T  L   +  +   L  +     +++ +
Sbjct: 184 ALYDTEKTTELFCAMVNRLKDLGGFPLVSDSESNV 218


>gi|16129797|ref|NP_416358.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655]
 gi|74311833|ref|YP_310252.1| exodeoxyribonuclease X [Shigella sonnei Ss046]
 gi|82776429|ref|YP_402778.1| exodeoxyribonuclease X [Shigella dysenteriae Sd197]
 gi|89108684|ref|AP_002464.1| DNA exonuclease X [Escherichia coli str. K-12 substr. W3110]
 gi|91211067|ref|YP_541053.1| exodeoxyribonuclease X [Escherichia coli UTI89]
 gi|110641962|ref|YP_669692.1| exodeoxyribonuclease X [Escherichia coli 536]
 gi|117623997|ref|YP_852910.1| exodeoxyribonuclease X [Escherichia coli APEC O1]
 gi|157159299|ref|YP_001463146.1| exodeoxyribonuclease X [Escherichia coli E24377A]
 gi|161486210|ref|NP_754148.2| exodeoxyribonuclease X [Escherichia coli CFT073]
 gi|170081500|ref|YP_001730820.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B]
 gi|170681411|ref|YP_001743401.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5]
 gi|188495324|ref|ZP_03002594.1| exodeoxyribonuclease X [Escherichia coli 53638]
 gi|191168492|ref|ZP_03030279.1| exodeoxyribonuclease X [Escherichia coli B7A]
 gi|191172968|ref|ZP_03034502.1| exodeoxyribonuclease X [Escherichia coli F11]
 gi|193066046|ref|ZP_03047103.1| exodeoxyribonuclease X [Escherichia coli E22]
 gi|194429668|ref|ZP_03062186.1| exodeoxyribonuclease X [Escherichia coli B171]
 gi|194439062|ref|ZP_03071145.1| exodeoxyribonuclease X [Escherichia coli 101-1]
 gi|209919210|ref|YP_002293294.1| exodeoxyribonuclease X [Escherichia coli SE11]
 gi|218554418|ref|YP_002387331.1| exodeoxyribonuclease X [Escherichia coli IAI1]
 gi|218558708|ref|YP_002391621.1| exodeoxyribonuclease X [Escherichia coli S88]
 gi|218689782|ref|YP_002397994.1| exodeoxyribonuclease X [Escherichia coli ED1a]
 gi|218695410|ref|YP_002403077.1| exodeoxyribonuclease X [Escherichia coli 55989]
 gi|218699585|ref|YP_002407214.1| exodeoxyribonuclease X [Escherichia coli IAI39]
 gi|218705343|ref|YP_002412862.1| exodeoxyribonuclease X [Escherichia coli UMN026]
 gi|227885729|ref|ZP_04003534.1| exodeoxyribonuclease X [Escherichia coli 83972]
 gi|237705796|ref|ZP_04536277.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA]
 gi|238901059|ref|YP_002926855.1| DNA exonuclease X [Escherichia coli BW2952]
 gi|256017967|ref|ZP_05431832.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|256022492|ref|ZP_05436357.1| exodeoxyribonuclease X [Escherichia sp. 4_1_40B]
 gi|260844189|ref|YP_003221967.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009]
 gi|260855770|ref|YP_003229661.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368]
 gi|260868365|ref|YP_003234767.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128]
 gi|291283026|ref|YP_003499844.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615]
 gi|293405339|ref|ZP_06649331.1| exodeoxyribonuclease X [Escherichia coli FVEC1412]
 gi|293410154|ref|ZP_06653730.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415159|ref|ZP_06657802.1| exodeoxyribonuclease X [Escherichia coli B185]
 gi|293446216|ref|ZP_06662638.1| exodeoxyribonuclease X [Escherichia coli B088]
 gi|298380980|ref|ZP_06990579.1| exodeoxyribonuclease X [Escherichia coli FVEC1302]
 gi|300816266|ref|ZP_07096488.1| exonuclease [Escherichia coli MS 107-1]
 gi|300824216|ref|ZP_07104334.1| exonuclease [Escherichia coli MS 119-7]
 gi|300899088|ref|ZP_07117373.1| exonuclease [Escherichia coli MS 198-1]
 gi|300917583|ref|ZP_07134236.1| exonuclease [Escherichia coli MS 115-1]
 gi|300924914|ref|ZP_07140845.1| exonuclease [Escherichia coli MS 182-1]
 gi|300928872|ref|ZP_07144378.1| exonuclease [Escherichia coli MS 187-1]
 gi|300951460|ref|ZP_07165297.1| exonuclease [Escherichia coli MS 116-1]
 gi|300956649|ref|ZP_07168925.1| exonuclease [Escherichia coli MS 175-1]
 gi|300982052|ref|ZP_07175871.1| exonuclease [Escherichia coli MS 200-1]
 gi|300994204|ref|ZP_07180761.1| exonuclease [Escherichia coli MS 45-1]
 gi|301025418|ref|ZP_07188970.1| exonuclease [Escherichia coli MS 196-1]
 gi|301050807|ref|ZP_07197661.1| exonuclease [Escherichia coli MS 185-1]
 gi|301327607|ref|ZP_07220824.1| exonuclease [Escherichia coli MS 78-1]
 gi|306814328|ref|ZP_07448494.1| exodeoxyribonuclease X [Escherichia coli NC101]
 gi|307138504|ref|ZP_07497860.1| exodeoxyribonuclease X [Escherichia coli H736]
 gi|307314078|ref|ZP_07593690.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|309789238|ref|ZP_07683831.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|309794224|ref|ZP_07688648.1| exonuclease [Escherichia coli MS 145-7]
 gi|312969882|ref|ZP_07784065.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|331642455|ref|ZP_08343590.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H736]
 gi|331653250|ref|ZP_08354255.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M718]
 gi|331668536|ref|ZP_08369384.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA271]
 gi|331673376|ref|ZP_08374144.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA280]
 gi|331677723|ref|ZP_08378398.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H591]
 gi|331683348|ref|ZP_08383949.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H299]
 gi|332279002|ref|ZP_08391415.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|84027958|sp|P0AEK1|EXOX_ECOL6 RecName: Full=Exodeoxyribonuclease 10; AltName:
           Full=Exodeoxyribonuclease X; Short=Exo X;
           Short=Exonuclease X
 gi|84027959|sp|P0AEK0|EXOX_ECOLI RecName: Full=Exodeoxyribonuclease 10; AltName:
           Full=Exodeoxyribonuclease X; Short=Exo X;
           Short=Exonuclease X
 gi|6166471|gb|AAF04847.1|AF194116_1 exonuclease X [Escherichia coli]
 gi|1788149|gb|AAC74914.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655]
 gi|73855310|gb|AAZ88017.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81240577|gb|ABB61287.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85675148|dbj|BAE76547.1| DNA exonuclease X [Escherichia coli str. K12 substr. W3110]
 gi|91072641|gb|ABE07522.1| exodeoxyribonuclease X [Escherichia coli UTI89]
 gi|110343554|gb|ABG69791.1| exodeoxyribonuclease X [Escherichia coli 536]
 gi|115513121|gb|ABJ01196.1| exodeoxyribonuclease X [Escherichia coli APEC O1]
 gi|157081329|gb|ABV21037.1| exodeoxyribonuclease X [Escherichia coli E24377A]
 gi|169889335|gb|ACB03042.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B]
 gi|170519129|gb|ACB17307.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5]
 gi|188490523|gb|EDU65626.1| exodeoxyribonuclease X [Escherichia coli 53638]
 gi|190901445|gb|EDV61207.1| exodeoxyribonuclease X [Escherichia coli B7A]
 gi|190906679|gb|EDV66284.1| exodeoxyribonuclease X [Escherichia coli F11]
 gi|192926283|gb|EDV80920.1| exodeoxyribonuclease X [Escherichia coli E22]
 gi|194412310|gb|EDX28614.1| exodeoxyribonuclease X [Escherichia coli B171]
 gi|194422021|gb|EDX38025.1| exodeoxyribonuclease X [Escherichia coli 101-1]
 gi|209767638|gb|ACI82131.1| exonuclease X [Escherichia coli]
 gi|209767644|gb|ACI82134.1| exonuclease X [Escherichia coli]
 gi|209912469|dbj|BAG77543.1| DNA exonuclease X [Escherichia coli SE11]
 gi|218352142|emb|CAU97881.1| DNA exonuclease X [Escherichia coli 55989]
 gi|218361186|emb|CAQ98770.1| DNA exonuclease X [Escherichia coli IAI1]
 gi|218365477|emb|CAR03204.1| DNA exonuclease X [Escherichia coli S88]
 gi|218369571|emb|CAR17340.1| DNA exonuclease X [Escherichia coli IAI39]
 gi|218427346|emb|CAR08241.2| DNA exonuclease X [Escherichia coli ED1a]
 gi|218432440|emb|CAR13333.1| DNA exonuclease X [Escherichia coli UMN026]
 gi|222033593|emb|CAP76334.1| exodeoxyribonuclease 10 [Escherichia coli LF82]
 gi|226900553|gb|EEH86812.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA]
 gi|227837302|gb|EEJ47768.1| exodeoxyribonuclease X [Escherichia coli 83972]
 gi|238860815|gb|ACR62813.1| DNA exonuclease X [Escherichia coli BW2952]
 gi|257754419|dbj|BAI25921.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368]
 gi|257759336|dbj|BAI30833.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009]
 gi|257764721|dbj|BAI36216.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128]
 gi|260449035|gb|ACX39457.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1]
 gi|281178912|dbj|BAI55242.1| DNA exonuclease X [Escherichia coli SE15]
 gi|284921762|emb|CBG34835.1| exodeoxyribonuclease X [Escherichia coli 042]
 gi|290762899|gb|ADD56860.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615]
 gi|291323046|gb|EFE62474.1| exodeoxyribonuclease X [Escherichia coli B088]
 gi|291427547|gb|EFF00574.1| exodeoxyribonuclease X [Escherichia coli FVEC1412]
 gi|291432807|gb|EFF05786.1| exodeoxyribonuclease X [Escherichia coli B185]
 gi|291470622|gb|EFF13106.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294490108|gb|ADE88864.1| exodeoxyribonuclease X [Escherichia coli IHE3034]
 gi|298278422|gb|EFI19936.1| exodeoxyribonuclease X [Escherichia coli FVEC1302]
 gi|299880094|gb|EFI88305.1| exonuclease [Escherichia coli MS 196-1]
 gi|300297496|gb|EFJ53881.1| exonuclease [Escherichia coli MS 185-1]
 gi|300307354|gb|EFJ61874.1| exonuclease [Escherichia coli MS 200-1]
 gi|300316527|gb|EFJ66311.1| exonuclease [Escherichia coli MS 175-1]
 gi|300357297|gb|EFJ73167.1| exonuclease [Escherichia coli MS 198-1]
 gi|300406332|gb|EFJ89870.1| exonuclease [Escherichia coli MS 45-1]
 gi|300415183|gb|EFJ98493.1| exonuclease [Escherichia coli MS 115-1]
 gi|300418932|gb|EFK02243.1| exonuclease [Escherichia coli MS 182-1]
 gi|300449289|gb|EFK12909.1| exonuclease [Escherichia coli MS 116-1]
 gi|300463162|gb|EFK26655.1| exonuclease [Escherichia coli MS 187-1]
 gi|300523287|gb|EFK44356.1| exonuclease [Escherichia coli MS 119-7]
 gi|300530956|gb|EFK52018.1| exonuclease [Escherichia coli MS 107-1]
 gi|300845856|gb|EFK73616.1| exonuclease [Escherichia coli MS 78-1]
 gi|305852487|gb|EFM52938.1| exodeoxyribonuclease X [Escherichia coli NC101]
 gi|306906216|gb|EFN36733.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|307553862|gb|ADN46637.1| exodeoxyribonuclease X [Escherichia coli ABU 83972]
 gi|307626675|gb|ADN70979.1| exodeoxyribonuclease X [Escherichia coli UM146]
 gi|308122129|gb|EFO59391.1| exonuclease [Escherichia coli MS 145-7]
 gi|308922992|gb|EFP68506.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|310338167|gb|EFQ03256.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|312946443|gb|ADR27270.1| exodeoxyribonuclease X [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061147|gb|ADT75474.1| DNA exonuclease X [Escherichia coli W]
 gi|315136487|dbj|BAJ43646.1| exodeoxyribonuclease 10 [Escherichia coli DH1]
 gi|315286537|gb|EFU45972.1| exonuclease [Escherichia coli MS 110-3]
 gi|315290373|gb|EFU49749.1| exonuclease [Escherichia coli MS 153-1]
 gi|320194441|gb|EFW69072.1| Exodeoxyribonuclease X [Escherichia coli WV_060327]
 gi|320198024|gb|EFW72632.1| Exodeoxyribonuclease X [Escherichia coli EC4100B]
 gi|320641696|gb|EFX11084.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. G5101]
 gi|320647056|gb|EFX15889.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. 493-89]
 gi|320652339|gb|EFX20637.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. H 2687]
 gi|320657940|gb|EFX25702.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658513|gb|EFX26207.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668411|gb|EFX35238.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. LSU-61]
 gi|323152600|gb|EFZ38877.1| exonuclease family protein [Escherichia coli EPECa14]
 gi|323158672|gb|EFZ44686.1| exonuclease family protein [Escherichia coli E128010]
 gi|323166600|gb|EFZ52360.1| exonuclease family protein [Shigella sonnei 53G]
 gi|323180624|gb|EFZ66169.1| exonuclease family protein [Escherichia coli 1180]
 gi|323186407|gb|EFZ71755.1| exonuclease family protein [Escherichia coli 1357]
 gi|323378276|gb|ADX50544.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli KO11]
 gi|323940489|gb|EGB36680.1| exonuclease [Escherichia coli E482]
 gi|323948271|gb|EGB44259.1| exonuclease [Escherichia coli H120]
 gi|323952346|gb|EGB48219.1| exonuclease [Escherichia coli H252]
 gi|323956475|gb|EGB52217.1| exonuclease [Escherichia coli H263]
 gi|323968612|gb|EGB64018.1| exonuclease [Escherichia coli M863]
 gi|323972649|gb|EGB67852.1| exonuclease [Escherichia coli TA007]
 gi|323977972|gb|EGB73058.1| exonuclease [Escherichia coli TW10509]
 gi|324007199|gb|EGB76418.1| exonuclease [Escherichia coli MS 57-2]
 gi|324012816|gb|EGB82035.1| exonuclease [Escherichia coli MS 60-1]
 gi|324018034|gb|EGB87253.1| exonuclease [Escherichia coli MS 117-3]
 gi|324118904|gb|EGC12793.1| exonuclease [Escherichia coli E1167]
 gi|327252967|gb|EGE64621.1| exonuclease family protein [Escherichia coli STEC_7v]
 gi|331039253|gb|EGI11473.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H736]
 gi|331049348|gb|EGI21420.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M718]
 gi|331063730|gb|EGI35641.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA271]
 gi|331069574|gb|EGI40961.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA280]
 gi|331074183|gb|EGI45503.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H591]
 gi|331079563|gb|EGI50760.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H299]
 gi|332101354|gb|EGJ04700.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|332343569|gb|AEE56903.1| exonuclease [Escherichia coli UMNK88]
          Length = 220

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|268609211|ref|ZP_06142938.1| exonuclease [Ruminococcus flavefaciens FD-1]
          Length = 179

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 30/190 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              ++++D ET   + A +  +    + V       +S          +   D   + +T
Sbjct: 1   MTRYIVFDVET--PNFANNHMSAIG-ITVVEDGRIADSFFSL---VDPETHFDHFNIRLT 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+K        A+  ++I    +     I+  +N  FD    +         +Y   
Sbjct: 55  GIDPKKVQGAP-NFAQLWQKIEPIMNSG---ILVAHNAVFDMSVLKK-----CLSAYGIE 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +       +   R +                    KL ++    GI   + H A +D 
Sbjct: 106 WKSTAKYLCTVQAGRKLLPGRG--------------HKLNEMCDYYGISLDH-HQADSDS 150

Query: 182 YATLALVWLI 191
            A   ++   
Sbjct: 151 RACAEILLRY 160


>gi|194476704|ref|YP_002048883.1| possible DNA polymerase III, epsilon subunit [Paulinella
           chromatophora]
 gi|171191711|gb|ACB42673.1| possible DNA polymerase III, epsilon subunit [Paulinella
           chromatophora]
          Length = 302

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 43/200 (21%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAV 58
           +    +I D ET           +   +    +     S   F   C+          + 
Sbjct: 74  LPEKLLILDTETTSLSPTDGNCIEIGAILFHLRHRATLSQIAFLLPCENNP-------SY 126

Query: 59  FITGITPQKAL-----RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            + GI+ +          G+              V ++ +I  +N  FD  +        
Sbjct: 127 SLNGISAETTRLIYPWEAGLSYF--------LTLVESSDLIVAHNASFDRQWFG------ 172

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                           D L ++   +  S   I WP +    ++  ++DLALA G+   +
Sbjct: 173 ---------------IDPLPIINKPWLCSMQDINWPVQRSLRSNPSIRDLALAYGVPVWS 217

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A  D      +     E
Sbjct: 218 THRALTDCLYMSQVFERCPE 237


>gi|170739960|ref|YP_001768615.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168194234|gb|ACA16181.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 186

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 51/194 (26%), Gaps = 30/194 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                I D+ET   +   D         +      +   E    +P  D    P  + + 
Sbjct: 1   MRTLAI-DFET--ANERRDSACAVGLAWI-EDGRVVRR-EARLIRP-PDLRFSPFNIRVH 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+          E       F       ++  +N  FD                   
Sbjct: 55  GIRPEDVADA-KPFGEAMA---PFLPEIAGALVLAHNASFDVGVLCAALAACGLP----- 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R+  L  ++          QWP        ++L  LA   GI     HDA  D 
Sbjct: 106 ----RPRFTSLCTVQLAR------RQWPGEA----RYRLPILAERLGIPL-RHHDAGEDA 150

Query: 182 YATLALVWLIREKK 195
           +A   +      + 
Sbjct: 151 FACAQIALAAMREA 164


>gi|68248930|ref|YP_248042.1| ribonuclease T [Haemophilus influenzae 86-028NP]
 gi|81336659|sp|Q4QNL5|RNT_HAEI8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|68057129|gb|AAX87382.1| ribonuclease T [Haemophilus influenzae 86-028NP]
          Length = 229

 Score = 60.2 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 55/198 (27%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  KP +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q        +     II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +M                            A     +   AH 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAKLFCYMVNH 203


>gi|194228403|ref|XP_001492131.2| PREDICTED: similar to Three prime repair exonuclease 2 (3-5
           exonuclease TREX2) [Equus caballus]
          Length = 269

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 59/205 (28%), Gaps = 26/205 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA------------DD 50
             FV  D E  G        A+ +   V R   +    + F                  +
Sbjct: 41  ETFVFLDLEATGLPSVDPEIAEISLFAVHRSSLENPERDEFGIPVLPRVLDKLTLCMSPE 100

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDDYYS 106
                +A  ITG++ +   R G    +    R +  F S      C++ +N   +D    
Sbjct: 101 RPFTAKASEITGLSSEGLARCGKAGFDSAVVRMLQAFLSRQESPICLVAHNGFDYDFPLL 160

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-AL 165
                R      R +        D L  +R +      G +          + L  L   
Sbjct: 161 CTELRRLGARLPRDT-----VCLDTLPALRGLDHAHSHGTR----AQSCKGYSLGSLFRR 211

Query: 166 ANGIEHVNAHDAKADVYATLALVWL 190
               E   AH A+ DV+  L +   
Sbjct: 212 YFQEEPKAAHSAEGDVHTLLMVFLH 236


>gi|270208409|ref|YP_003329183.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Klebsiella pneumoniae]
 gi|283826841|ref|YP_003377712.1| conserved hypothetical plasmid protein [Shigella sonnei]
 gi|218546445|gb|ACK98834.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Klebsiella pneumoniae]
 gi|283466733|emb|CBI12389.1| conserved hypothetical plasmid protein [Shigella sonnei]
 gi|301333093|gb|ADK71040.1| hypothetical protein pHK01_007 [Escherichia coli]
          Length = 282

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 50/191 (26%), Gaps = 26/191 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +        W   
Sbjct: 157 QALCGAP-SWTDMARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
            + +  +++    Y             +   +  L   A   G      AH A  D    
Sbjct: 210 MTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGLAHSAIVDARMA 259

Query: 185 LALVWLIREKK 195
             +V  I    
Sbjct: 260 AGVVNAIAAYH 270


>gi|262067765|ref|ZP_06027377.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693]
 gi|291378491|gb|EFE86009.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693]
          Length = 191

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 23/195 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQF-AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            N  +  D ET G +       Q    +R+D+  + +E    F+ KP  +   + +A+ +
Sbjct: 1   MNKIIFIDTETGGVNPEKATLIQLSGIIRIDK--KDVEKFN-FYIKPFKNSEVNEKALEV 57

Query: 61  TGITPQKAL-RDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYR 112
            G T ++      V E E  ++               +  I+   N+RFD    +  F R
Sbjct: 58  QGRTLEELKTDKYVEEKEVYKQFINLLDKYIDKYDRTDKFIVAGYNVRFDVDILKAFFQR 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
           +            N  +  LD       +S   +Q         + KL+      GIE  
Sbjct: 118 HG----------NNFLFSYLDSSMLDPLYSIRLLQIAEILPVLENNKLETWCKHFGIEL- 166

Query: 173 NAHDAKADVYATLAL 187
            AHD+  ++ AT  L
Sbjct: 167 KAHDSLENIEATKKL 181


>gi|88859048|ref|ZP_01133689.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           tunicata D2]
 gi|88819274|gb|EAR29088.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           tunicata D2]
          Length = 210

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 62/202 (30%), Gaps = 20/202 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +++ D E  G D  +D     A + ++ Q   +  +E F     ++    P      GI
Sbjct: 27  KYLVIDLELTGLDPKVDEIVSLAWLPIEEQRIIVGRSEHFINCEVNELKQSP---IFHGI 83

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             + A++ GV   +    +          ++ ++N   D  + +  F             
Sbjct: 84  -DRFAVKGGVPLRQALLELQPLLDDH---VLVFHNAELDWAFLKAAFQNANL-------- 131

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              S   +LD M+  Y    +     + DD      L        +     H+A  D  A
Sbjct: 132 -LLSSSVMLDTMKIEYKRLMNQGHEIASDDLN----LARCRSRYQLPEYLTHNALTDALA 186

Query: 184 TLALVWLIREKKPKLFEYLYDY 205
           T  L      +          +
Sbjct: 187 TAELFLAQLNQIAGAKGLTLKH 208


>gi|282880819|ref|ZP_06289515.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305353|gb|EFA97417.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 183

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 52/186 (27%), Gaps = 30/186 (16%)

Query: 4   HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +F+  D+ET  G+  ++      AG+ V +  + +E+         +D       + I G
Sbjct: 5   NFIAIDFETATGKRASVCE----AGICVVKDGKIVETKSWLIR--PEDNAYSYWNIQIHG 58

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I P+             + I  +     T I+  +N  FD    R        D+     
Sbjct: 59  IHPEDTENAP-SFPCVWQEILTYLKE--TPILVAHNAAFDISCIRKSLELYHLDTL---- 111

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D    +RA                      L  L     I     H A  D  
Sbjct: 112 -----DVDYYCTLRAARHHYDFECHT-----------LGYLCEQFEIPEGTHHRAGDDAE 155

Query: 183 ATLALV 188
               L 
Sbjct: 156 MCARLF 161


>gi|9757860|dbj|BAB08494.1| exonuclease-like protein [Arabidopsis thaliana]
          Length = 500

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 27/191 (14%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET      + +     +F  + V  ++  ++++  V   +PA+  L  P +V  
Sbjct: 13  IAFFDVETT-IPFRVGQGYAILEFGSILVCPKKLVELKNYSVL-VRPANLNLITPRSVKC 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +      +  A+ +  ++           G+N ++FD    R  F     D    
Sbjct: 71  NGIKREDVESA-LTFADIADTVYDIL--HGRIWAGHNILKFDCPRIREAFAEIGRDPPE- 126

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L ++                   A   K+  LA   G+ +   H +  D
Sbjct: 127 ----PKGTIDSLALL------------TQRFGRRAGDMKMATLATYFGLGN-QTHRSLDD 169

Query: 181 VYATLALVWLI 191
           V     ++   
Sbjct: 170 VRMNFEVLKYC 180


>gi|314976530|gb|EFT20625.1| exonuclease [Propionibacterium acnes HL045PA1]
          Length = 169

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 42/161 (26%), Gaps = 15/161 (9%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           VI D ET   D    R  + + +  D       +  +             EA  +  I+P
Sbjct: 17  VILDTETTDLD---GRIIEISII--DAA---TGTVLMNQLINPQGAPIYAEARTVHHISP 68

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      +   R+    +     ++   N  FD       +     D+  W W   
Sbjct: 69  DDLATAP-TFTQVRPRLEDVVADR---VVMAWNAPFDQGRIEAEYGLAGLDAPAWPW--- 121

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                L   M        DG      D  A   +L  L   
Sbjct: 122 CCLMRLEAAMMGCRWRRLDGPHRGLGDVIAARQRLIALQQM 162


>gi|26108511|gb|AAN80713.1|AE016761_288 Exodeoxyribonuclease X [Escherichia coli CFT073]
          Length = 238

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 22  IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 74

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 75  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 114

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 115 -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 162

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 163 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 208

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 209 DPGYLRWLFNNLDSMSPELRLTLKH 233


>gi|16760829|ref|NP_456446.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765220|ref|NP_460835.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141480|ref|NP_804822.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62180453|ref|YP_216870.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|167993853|ref|ZP_02574946.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233692|ref|ZP_02658750.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168259853|ref|ZP_02681826.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168820696|ref|ZP_02832696.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194469318|ref|ZP_03075302.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197265660|ref|ZP_03165734.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200390618|ref|ZP_03217229.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|213419003|ref|ZP_03352069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213426806|ref|ZP_03359556.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213648159|ref|ZP_03378212.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213851907|ref|ZP_03381439.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|224583619|ref|YP_002637417.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238912063|ref|ZP_04655900.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289829019|ref|ZP_06546715.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25511843|pir||AB0741 exodeoxyribonuclease X (EC 3.1.11.-) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16420413|gb|AAL20794.1| DNA exonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16503126|emb|CAD05629.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137107|gb|AAO68671.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62128086|gb|AAX65789.1| DNA exonuclease X, degrades ss and ds DNA with 3'-5' polarity
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194455682|gb|EDX44521.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197243915|gb|EDY26535.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199603063|gb|EDZ01609.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205328180|gb|EDZ14944.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332278|gb|EDZ19042.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205342565|gb|EDZ29329.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205351180|gb|EDZ37811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|224468146|gb|ACN45976.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247049|emb|CBG24868.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993856|gb|ACY88741.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158399|emb|CBW17906.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912871|dbj|BAJ36845.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320085616|emb|CBY95394.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321224521|gb|EFX49584.1| Exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322714928|gb|EFZ06499.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130162|gb|ADX17592.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988772|gb|AEF07755.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 232

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +            +   + +N            F R         W    
Sbjct: 57  MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
              LI   +   +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     +    +   L  
Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215


>gi|167837413|ref|ZP_02464296.1| oligoribonuclease [Burkholderia thailandensis MSMB43]
          Length = 201

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 36/130 (27%), Gaps = 19/130 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDP 55
           + V  D E  G     DR  + A V  +   +         I  ++    K  D      
Sbjct: 19  NLVWLDMEMTGLSPDTDRIIEIAVVVTNSTLDIALEGPVLAIHQSDETLAKMDDWNK--- 75

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110
                 G +    +     V EA+ + +I  F      P    +  N+I  D  +     
Sbjct: 76  ---NTHGRSGLIDRVRASSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM 132

Query: 111 YRNFYDSYRW 120
                  +  
Sbjct: 133 PELERFFHYR 142


>gi|319946618|ref|ZP_08020852.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC
           700641]
 gi|319746666|gb|EFV98925.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC
           700641]
          Length = 819

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 67/209 (32%), Gaps = 39/209 (18%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFA-----GVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
              + + D E              A     G+ + +  + +E+ E            D  
Sbjct: 6   KRKYAVVDLEATSASSN-------AKIIQIGIVIIQDGQIVETYET---DVNPHEELDEH 55

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TGIT Q+  +     ++ +R++++        +   +N++FD        +   ++
Sbjct: 56  IRQLTGITNQQLKKAP-DFSQVARQVYELIED---AVFVAHNVKFDANLLAESLFWEGFE 111

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                      R D +++ +  +                  + L  L     I   +AH 
Sbjct: 112 LIT-------PRIDTVELAQVFFPTLE-------------RYNLSSLCEELAIPLDHAHS 151

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDY 205
           A +D  AT  L   +RE    L   L + 
Sbjct: 152 AISDAQATAQLFLKLRETIASLPRELVET 180


>gi|257867351|ref|ZP_05647004.1| exonuclease [Enterococcus casseliflavus EC30]
 gi|257873684|ref|ZP_05653337.1| exonuclease [Enterococcus casseliflavus EC10]
 gi|257877427|ref|ZP_05657080.1| exonuclease [Enterococcus casseliflavus EC20]
 gi|257801407|gb|EEV30337.1| exonuclease [Enterococcus casseliflavus EC30]
 gi|257807848|gb|EEV36670.1| exonuclease [Enterococcus casseliflavus EC10]
 gi|257811593|gb|EEV40413.1| exonuclease [Enterococcus casseliflavus EC20]
          Length = 180

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +         A V V +  + +            +     + + I GI
Sbjct: 5   NFIAMDFET--ANYQKHSACSLALVMV-QDSKIVGEYYTL---IQPETEFFWKNIQIHGI 58

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+          +  ++I Q+    N+ I+ +N        +         D Y  S  
Sbjct: 59  RPEDVQEAPK-FPDVWKQIQQY-YQLNSLIVAHNAGFDTGVLAGC------LDYYGLSQP 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N    +  L  +R      P+              KL  +     I  +N HDA  D  A
Sbjct: 111 N----YLSLCTVRTSRKLYPEFTN----------HKLNTVCEQLQIPLLNHHDALEDSRA 156

Query: 184 TLALVWLIREK 194
              ++    E+
Sbjct: 157 CAQILLRQEEE 167


>gi|148825392|ref|YP_001290145.1| ribonuclease T [Haemophilus influenzae PittEE]
 gi|229846411|ref|ZP_04466519.1| ribonuclease T [Haemophilus influenzae 7P49H1]
 gi|166228565|sp|A5UAG1|RNT_HAEIE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|148715552|gb|ABQ97762.1| ribonuclease T [Haemophilus influenzae PittEE]
 gi|229810504|gb|EEP46222.1| ribonuclease T [Haemophilus influenzae 7P49H1]
          Length = 229

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  +P +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q        +     II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +M                           LA     +   AH 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKAC-----------------LAAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAELFCYMVNH 203


>gi|145636543|ref|ZP_01792211.1| ribonuclease T [Haemophilus influenzae PittHH]
 gi|145270368|gb|EDK10303.1| ribonuclease T [Haemophilus influenzae PittHH]
          Length = 229

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  +P +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q        +     II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +M                           LA     +   AH 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKAC-----------------LAAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAKLFCYMVNH 203


>gi|85713236|ref|ZP_01044262.1| RNase T, degrades tRNA [Idiomarina baltica OS145]
 gi|85692931|gb|EAQ30903.1| RNase T, degrades tRNA [Idiomarina baltica OS145]
          Length = 222

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 62/205 (30%), Gaps = 37/205 (18%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDY 51
           M   F     V+ D ET G + + D   + A V ++       + +ES + F  +P +  
Sbjct: 21  MKQRFRGYLPVVIDVETAGFNASTDALLEIAAVILNFDEHGQLKPVESHQ-FHVEPFEGA 79

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYY 105
             +  A+   GI P   LR  + E E  + + +              ++  +N  FD  +
Sbjct: 80  NIEQAAIEFNGIDPHSELRGALPEDEVLKALFKPIRKAQKAAGCQRSVLVGHNSNFDHSF 139

Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
                 R           N    +   D            +             L     
Sbjct: 140 LMRAAERANIK------RNPFHPFVSFDTTSLAALTLGQTV-------------LIKACK 180

Query: 166 ANGIEHV--NAHDAKADVYATLALV 188
           A GIE     AH A  D   T  L 
Sbjct: 181 AAGIEFDQKQAHSALYDTEKTAELF 205


>gi|251783306|ref|YP_002997611.1| DNA polymerase III subunit epsilon [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391938|dbj|BAH82397.1| DNA polymerase III subunit epsilon [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 199

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 9   DTYIAFDLE---FNTVNDVSHVIQVSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 61

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 62  TGITSDKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 117 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 158

Query: 181 VYATLALVWLIREKKPK 197
              T A+     E    
Sbjct: 159 ARMTAAIYESFLETDTN 175


>gi|259419276|ref|ZP_05743193.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B]
 gi|259345498|gb|EEW57352.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B]
          Length = 240

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 24/193 (12%)

Query: 7   IYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + DYET G     + +  +F   RVD   + +     F           P  + +  IT 
Sbjct: 11  VIDYETTGTQEDENAQVIEFG--RVDVDLDTLGIVNPFRALAKPSEPIPPVTMAVHHITD 68

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      +  +         +   +  +N +F+         + F+D     W   
Sbjct: 69  TDVADAPPP-GQVWQPFWD--GCRSEDYVAAHNAKFE---------QYFHDGNGRKWICT 116

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                L+    A    +     W   D+   SF                H A  D Y T 
Sbjct: 117 YKSA-LVVWPDAPSHGNQALRYWLGIDNIHPSFD--------RDAAQPPHRALPDAYVTA 167

Query: 186 ALVWLIREKKPKL 198
            ++  + + K   
Sbjct: 168 HILLELLKHKTPE 180


>gi|242241732|ref|ZP_04796177.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144]
 gi|242234822|gb|EES37133.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144]
          Length = 184

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 57/213 (26%), Gaps = 35/213 (16%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M  + FV  D+ET   +           V+V    +  ES                  + 
Sbjct: 1   MAQNAFVALDFET--ANGKRTSICSVGMVKVIDN-QITESFHTL---VNPFDYFTETNIN 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI P+               + QF        +  +N  FD             D+  
Sbjct: 55  VHGIHPEDVQDAPG-FKHVYPYMLQFIDQ---LPVVAHNAAFDMNVLHQSLKSLNIDTPS 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            ++                        Q   R   A  + L+ L     ++    HDA  
Sbjct: 111 LTY--------------------FCSYQLAKRTINAYRYGLKHLMNHYHLDFHGHHDALN 150

Query: 180 D----VYATLALVWLIREKKPKLFEYLYDYRNK 208
           D       T  L+    + +  L  Y  + ++K
Sbjct: 151 DAKACAMITYRLLKHYDDLQSMLSIYGKNLKDK 183


>gi|194290291|ref|YP_002006198.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424]
 gi|193224126|emb|CAQ70135.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 211

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 12/140 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G     DR  + A V  D +   +    V     +D  L   D      
Sbjct: 14  NNLIWLDMEMTGLQPDTDRIIEVAVVITDSELNILAEGPVLVIHQSDAVLDGMDNWNKGT 73

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN-----IF 110
            G +    K     + E +    +  F           +  N+I  D  +          
Sbjct: 74  HGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPAGKSPMCGNSICQDRRFMARYMPKLEA 133

Query: 111 YRNFYDSYRWSWDNGNSRWD 130
           + ++ +    +      RW+
Sbjct: 134 FFHYRNLDVSTLKELCKRWE 153


>gi|104784044|ref|YP_610542.1| exonuclease [Pseudomonas entomophila L48]
 gi|95113031|emb|CAK17759.1| putative exonuclease [Pseudomonas entomophila L48]
          Length = 236

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 26/218 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V ++     +     F             +V I  + P
Sbjct: 42  VVLDLETSGLNLNRDQVLSIGAVAIEDGAIDLGRP--FERTLHRPTQKTNASVLIHRLGP 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             AL  G   AE    +  F    ++ ++ ++       + + +  R   DS      + 
Sbjct: 100 S-ALAAGCDPAEALLDLLAFI--GDSPVLAFH-----APFDQRMLARALKDSLGLRLQHV 151

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L  M        +               L D     G+E    H A AD   T 
Sbjct: 152 FLDVAELAPMLNPDTVLREAG-------------LDDWIARFGLEVQARHHASADAQVTA 198

Query: 186 ALVWLIR---EKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
            L  ++     ++        + R K   R+ +     
Sbjct: 199 ELALILFSQARRQQLDSPLQLEQRLKQWRRRKVHNHGF 236


>gi|228470614|ref|ZP_04055471.1| exonuclease [Porphyromonas uenonis 60-3]
 gi|228307741|gb|EEK16717.1| exonuclease [Porphyromonas uenonis 60-3]
          Length = 189

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 50/202 (24%), Gaps = 31/202 (15%)

Query: 2   TNH--FVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            N   F+  D+ET  G         +     V     +I  T  +  +P +        +
Sbjct: 1   MNTLDFIAIDFETATG---QRTSICEVGICLVRNG--EIAETRSWLVQP-EGNRYSYWNM 54

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
              GI P+   R     AE  + I + +      ++ +N              R+  +  
Sbjct: 55  QCHGIRPEDTKRAP-SFAEVWQEIAEQYIGEGALLVAHNVPFD----------RSCLEQA 103

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              ++           +R        G              L  L     I     H A 
Sbjct: 104 AQLYELTLPELQWDCSLRRARQIYDYGCHT-----------LAYLCEQLSIPEGRHHRAG 152

Query: 179 ADVYATLALVWLIREKKPKLFE 200
            D      L         + + 
Sbjct: 153 DDAEMCARLYLRELHDSYESYT 174


>gi|170758360|ref|YP_001787672.1| putative exonuclease [Clostridium botulinum A3 str. Loch Maree]
 gi|169405349|gb|ACA53760.1| putative exonuclease [Clostridium botulinum A3 str. Loch Maree]
          Length = 200

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 67/204 (32%), Gaps = 30/204 (14%)

Query: 4   HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           +++I+D E    +   +            Q   ++++  +  I++      KP      +
Sbjct: 2   NYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALI-KPEIYSNLN 57

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P    +T +T     +      E  +   +F +     +  +      + +   ++Y   
Sbjct: 58  PFVKNLTNLTMDSLNKAN-PFREVYKDFLEFLNKDKNILCIWGMTDMKELFRNIVYYELD 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +S    + N             + A++   + +P   +   S  ++   L +  ++ + 
Sbjct: 117 TESMPKEYIN-------------VQAYTGKYLNYPKSINVGLSNAVE---LFHITKNNDF 160

Query: 175 HDAKADVYATLALVWLIREKKPKL 198
           H+A  D + T  +   +       
Sbjct: 161 HNAFNDAFYTAEVFKKVYLFYRLQ 184


>gi|194442926|ref|YP_002041143.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194401589|gb|ACF61811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 232

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +            +   + +N            F R         W    
Sbjct: 57  MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
              LI   +   +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FSFGKYRGKAVSEVAKR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     +    +   L  
Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215


>gi|76798115|ref|ZP_00780369.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae 18RS21]
 gi|76586523|gb|EAO63027.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae 18RS21]
          Length = 740

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 73/241 (30%), Gaps = 39/241 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +    +  
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGCE-- 125

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    R D +++ +  Y                  + L  LA +  IE  +AH A 
Sbjct: 126 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           AD  AT  L   ++ K   L + + +         L +   +    +    F   +    
Sbjct: 168 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 227

Query: 239 L 239
            
Sbjct: 228 W 228


>gi|187734182|ref|YP_001880647.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94]
 gi|187431174|gb|ACD10448.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94]
          Length = 220

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 64/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y         S    +   L  
Sbjct: 191 DPGYLRWSFNNLDSMSPELRLTLKH 215


>gi|117620471|ref|YP_857153.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561878|gb|ABK38826.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 240

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D Q   + +    F  +P +    +  A+  TG
Sbjct: 39  VVIDVETAGFNARTDALLEIAAYTLKMDEQGWLVPDQIFHFHVEPFEGANLEKAALEFTG 98

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +              II  +N  FD  +      R    
Sbjct: 99  IDPFNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAAAERAGLK 158

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +       +                     +     ++  AH 
Sbjct: 159 RNPFHPFATFDTAALSGLALGQTVLAKACQ-----------------SARIPFDNKEAHS 201

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 202 ALYDTERTTELFCHIVNR 219


>gi|220920536|ref|YP_002495837.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219945142|gb|ACL55534.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 189

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 30/194 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                I D+ET   +   D         +      +   E    +PA+     P  V + 
Sbjct: 1   MRTLAI-DFET--ANERRDSACAVGLAWI-EDGRVVRR-EARLIRPAEMR-FSPFNVRVH 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+          +F+  +  F       ++  +N  FD                 ++
Sbjct: 55  GIRPEDVADAP----DFAAAMAPFLPEIAGALVLAHNASFDIGVLAAALAACGLPQPDYT 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L + R  +              G   ++L  LA   GI     HDA  D 
Sbjct: 111 ------SLCTLQLARRQW-------------PGQERYRLPALAARLGIAF-RHHDAGEDA 150

Query: 182 YATLALVWLIREKK 195
           +    +      + 
Sbjct: 151 FVCAEVALAAMREA 164


>gi|307545334|ref|YP_003897813.1| ribonuclease T [Halomonas elongata DSM 2581]
 gi|307217358|emb|CBV42628.1| ribonuclease T [Halomonas elongata DSM 2581]
          Length = 221

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 65/222 (29%), Gaps = 33/222 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYL 52
           M   F     V+ D ET G +   D   + A V   +D +   + ++T  +   P +   
Sbjct: 10  MAQRFRSFLPVVVDLETGGFNAKGDAILEIAAVTLTMDPEGNLMPDATYAYHVTPFEGAN 69

Query: 53  PDPEAVFITGITPQK-ALRD-GVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDY 104
            +  A+  TGI       R   V EAE    I     +          I+  +N  FD  
Sbjct: 70  VEQSALDFTGIRLDDPLRRQVAVSEAEALGEIFRPVRKAIKAHGCTRAILVGHNAAFDHG 129

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
           +      R       +   +      L  ++      +                     A
Sbjct: 130 FLNAAVERCAIKRNPFHPFSSFDTASLAGLIYGQTVLARACR-----------------A 172

Query: 165 LANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYR 206
                ++  AH A+ D   T  L   +  +   L  +    R
Sbjct: 173 AGIEFDNGAAHSARYDTERTAELFCAMINRYKDLGGWRLAQR 214


>gi|300361318|ref|ZP_07057495.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
 gi|300353937|gb|EFJ69808.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
          Length = 177

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET             A V V    E ++               D   + + GI
Sbjct: 2   NFTAMDFETANSHPESA--CSLALVMVRNN-EIVDRFYTV---INPQMPFDGRNIRVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE   +I +        ++  +N RFD         R    +  +   
Sbjct: 56  TAEDVKNAP-TMAEVWPKIKKL--YQPGMLVAAHNARFDCRVMEKSLARYNIPAPHYF-- 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +D +    AF PD            + KL  ++ A  I   + H+A +D  A
Sbjct: 111 -------AIDTLATSKAFEPDL----------PNHKLDTVSEALNINLWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CAGIL 158


>gi|206579741|ref|YP_002237768.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342]
 gi|206568799|gb|ACI10575.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342]
          Length = 219

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 67/265 (25%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G         + A V +        +      +P  D    P+A+ I  IT +
Sbjct: 4   VIDTETCGL---QGGIVEIASVDI-VDGRIT-NPMSHLVRP--DRPITPQAMAIHRITEE 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E             +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-EIIP------YYLGSPWYVAHNASFDRRV---------LPEMSGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R ++          S      S KL           ++ H A  D Y T A
Sbjct: 97  --ICTMKLARRLWPGIK-----YSNMGLYKSRKLNVATP----PGLHHHRALYDCYITAA 145

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246
           L+  I        + + D   +  L                  F   +     +A +A +
Sbjct: 146 LLLDIINVSGWTPDEMADITGRPALLT---------------TFTFGKYRGKAVAEIAEN 190

Query: 247 -PRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +          +   L  
Sbjct: 191 DPGYLRWLFNNLDRMSPELRLTLKH 215


>gi|82543665|ref|YP_407612.1| exodeoxyribonuclease X [Shigella boydii Sb227]
 gi|81245076|gb|ABB65784.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320177515|gb|EFW52509.1| Exodeoxyribonuclease X [Shigella dysenteriae CDC 74-1112]
 gi|320183242|gb|EFW58099.1| Exodeoxyribonuclease X [Shigella flexneri CDC 796-83]
 gi|332096685|gb|EGJ01676.1| exonuclease family protein [Shigella boydii 3594-74]
          Length = 220

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 64/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y         S    +   L  
Sbjct: 191 DPGYLRWSFNNLDSMSPELRLTLKH 215


>gi|161503006|ref|YP_001570118.1| exodeoxyribonuclease X [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864353|gb|ABX20976.1| hypothetical protein SARI_01068 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 231

 Score = 60.2 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITES 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +            +   + +N            F R         W    
Sbjct: 57  MVADKPWIE-DVIP-----LYYGSQWYVAHN----------ASFDRRVLPELPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
              LI   +   +             + +      P +  +  F   +     ++ +A  
Sbjct: 145 -ALLIDIIRTTGW-----------TEEEMVNITGRPALLTT--FPFGKYRGKAVSEIAKR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     +    +   L  
Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215


>gi|327394158|dbj|BAK11580.1| exodeoxyribonuclease X exoX [Pantoea ananatis AJ13355]
          Length = 223

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 52/193 (26%), Gaps = 40/193 (20%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M     + D ET G         + A V V    + +          + D     +A+ +
Sbjct: 1   MMLR--VIDTETCGL---QGGVVEVASVDV-IDGQIVNPMSDL---VSPDRPISRQAMAV 51

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             IT    +    +E               +     +N  FD         R        
Sbjct: 52  HRITEAMVMGKPPIE-------EAILRYHGSPFYVAHNASFD---------RRMLPEMHG 95

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W         + + R +         WP    G  + +            ++AH A  D
Sbjct: 96  EW------ICTMTLARQL---------WPGIKYGNQALRHSLKLDVTPPADLHAHRALYD 140

Query: 181 VYATLALVWLIRE 193
            Y T AL+  I +
Sbjct: 141 CYVTAALLIRIMD 153


>gi|322806628|emb|CBZ04197.1| putative DNA polymerase III epsilon chain [Clostridium botulinum
           H04402 065]
          Length = 253

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 58/207 (28%), Gaps = 30/207 (14%)

Query: 4   HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           +++I+D E    +   +            Q   ++++  +  I++      KP      +
Sbjct: 2   NYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNAL-VKPEIYSDLN 57

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P    +T +T     +      E  +   +F +        +              +RN 
Sbjct: 58  PFVKNLTNLTMDSLNKA-KSFREVYKDFLKFLNKDRNIFCIWGMTDM------KELFRNI 110

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                 +        ++       Y               + + +L  +   N       
Sbjct: 111 VYYEFHTESMPKEYINV-----QAYTGKYLNYPKSINVGLSNAVELFHITKNNDF----- 160

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H+A  D + T  +   I  +K K   Y
Sbjct: 161 HNAFNDAFYTAEVFKKIYSEKIKTKIY 187


>gi|303252005|ref|ZP_07338176.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247168|ref|ZP_07529219.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302649435|gb|EFL79620.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306856306|gb|EFM88458.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 218

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 26/215 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D     + +    F  +P +    +P+++   G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 63  ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E     E  + + +          +I  +N  FD  + +    R    
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKR---- 136

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +  +    + + D            +   +       F           +   AH 
Sbjct: 137 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKIPF-----------DGKQAHS 183

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
           A  D   T  L   +  +   L  +     +++ +
Sbjct: 184 ALYDTEKTTELFCAMVNRLKDLGGFPLVSDSESNV 218


>gi|167854572|ref|ZP_02477353.1| oligoribonuclease [Haemophilus parasuis 29755]
 gi|167854327|gb|EDS25560.1| oligoribonuclease [Haemophilus parasuis 29755]
          Length = 183

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +           +    K ++  + 
Sbjct: 6   KQNLIWIDLEMTGLDPEKERIIEIATIITDKDLNILAEGPVLAVHQPDELLNKMSEWCVK 65

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
              A    G+  ++  +  + E     +   F           I  N+I  D  +     
Sbjct: 66  THTA---NGL-VERVKQSKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLYKYM 121

Query: 111 YRNFYDSYRWS 121
                  +   
Sbjct: 122 PDLADYFHYRH 132


>gi|157736764|ref|YP_001489447.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315635941|ref|ZP_07891202.1| exonuclease [Arcobacter butzleri JV22]
 gi|157698618|gb|ABV66778.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
 gi|315479725|gb|EFU70397.1| exonuclease [Arcobacter butzleri JV22]
          Length = 203

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 55/196 (28%), Gaps = 20/196 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N +V  D ET G +   D       V +      +  T   F KP+ D   + E++ + 
Sbjct: 28  QNEYVSLDCETTGLNPKKDEILSIGAVLIKDNKILMRKTFNIFLKPSKD--INIESIKVH 85

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            +           E      I+Q      +  I    I FD                   
Sbjct: 86  HLRQIDLNDALEPEI----GIYQLLDFIGSRPIVGYYIEFDMAIISK------------- 128

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +        L +    + +   D  +  S        K   +     I  +  HDA  D 
Sbjct: 129 YTKKYLGIKLPNTPIEVSSIYYDSRKSTSNYGF-IDLKFDTIMKNLNIPVLGKHDALNDA 187

Query: 182 YATLALVWLIREKKPK 197
             T  +   +++   +
Sbjct: 188 IMTSMIFLKLKQFINQ 203


>gi|149194243|ref|ZP_01871340.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus
           TB-2]
 gi|149135418|gb|EDM23897.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus
           TB-2]
          Length = 248

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 43/184 (23%), Gaps = 29/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + I D E         +  +   V++ +    I+                     +TGI 
Sbjct: 66  YTILDLEVNNSKPKEGQIIEIGAVKL-KNLVPIDEFSFLIYAKD----IPRYVTKVTGIN 120

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q    +   + E   +   F       +I  +   FD  +    F +            
Sbjct: 121 NQMLKNE-KSQKEILEKFRLFL---GDSVIVAHAADFDFNFLAKQFEKEDLGYLLNP--- 173

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                I    +   A  + L+ L     +     H A  D   T
Sbjct: 174 -----------------HLCTITLAKKTLKANRYGLKYLKEELNLPEEIDHRALGDARTT 216

Query: 185 LALV 188
             + 
Sbjct: 217 TRVF 220


>gi|22536702|ref|NP_687553.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus agalactiae 2603V/R]
 gi|25010639|ref|NP_735034.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus agalactiae NEM316]
 gi|22533544|gb|AAM99425.1|AE014216_1 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus agalactiae 2603V/R]
 gi|23094993|emb|CAD46214.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 835

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 73/241 (30%), Gaps = 39/241 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +    +  
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGCE-- 125

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    R D +++ +  Y                  + L  LA +  IE  +AH A 
Sbjct: 126 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           AD  AT  L   ++ K   L + + +         L +   +    +    F   +    
Sbjct: 168 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 227

Query: 239 L 239
            
Sbjct: 228 W 228


>gi|77405453|ref|ZP_00782546.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae H36B]
 gi|77175946|gb|EAO78722.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae H36B]
          Length = 835

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 73/241 (30%), Gaps = 39/241 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIXGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +    +  
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGCE-- 125

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    R D +++ +  Y                  + L  LA +  IE  +AH A 
Sbjct: 126 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           AD  AT  L   ++ K   L + + +         L +   +    +    F   +    
Sbjct: 168 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 227

Query: 239 L 239
            
Sbjct: 228 W 228


>gi|116671124|ref|YP_832057.1| exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
 gi|116611233|gb|ABK03957.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
          Length = 337

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 52/188 (27%), Gaps = 27/188 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F   D+ET   +     P      +V R    +E        P D    D   V I
Sbjct: 1   MGLDFTAIDFET--ANGFRGSPCAVGLSKV-RGGVVVEEASWLMRPPEDHDRFDYHNVRI 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI P+          E    I  F       ++  +N  FD    R+    +       
Sbjct: 58  HGIRPEDVAGLPR-FGELFPEIGAFI---GGDVLAAHNAAFDLGVIRSALEVSGLP---- 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +D +  +                     S  L   A   G+  VN HDA  D
Sbjct: 110 -----GPAYDYVCTVMLSRRCY-----------SLVSNSLPYAAEEAGVPLVNHHDAAED 153

Query: 181 VYATLALV 188
             A   ++
Sbjct: 154 ARACAGIL 161


>gi|297806807|ref|XP_002871287.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317124|gb|EFH47546.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 468

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 28/191 (14%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET        +     +F  + V  ++  ++ S      +PAD  L    +V  
Sbjct: 9   IAFFDVETT--VPNRGQRFAILEFGSILVCPKKLTELRSYTTL-VQPADLSLISSLSVRC 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI     +   +  A+ +  ++           G+N +RFD         R  +     
Sbjct: 66  NGIKRDDVVLAPL-FADIADTVYDIL--HGRIWAGHNILRFD-----CARIREAFAEIGR 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L ++                   A   K+  LA   G+ +   H +  D
Sbjct: 118 QPPEPKGAIDSLGLL------------TQQFGRRAGDMKMATLARYFGLGN-QTHRSLDD 164

Query: 181 VYATLALVWLI 191
           V   L ++   
Sbjct: 165 VRMNLEVLKYC 175


>gi|251780665|ref|ZP_04823585.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243084980|gb|EES50870.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 243

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 54/198 (27%), Gaps = 27/198 (13%)

Query: 4   HFVIYDYETFGRDVALD--------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           ++++YD E F    + D           Q   V+++   E + +      KP       P
Sbjct: 2   NYIVYDLE-FNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFN-RLIKPTVHTEIHP 59

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T IT +    +    ++      +F       +  +               +N  
Sbjct: 60  FIKDLTQITTEMVNSEKY-FSDVYDDFIEFIGNKEFTVCIWGTSDI------KELLKNVK 112

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                  D+     D+ ++            ++     G        +   N       H
Sbjct: 113 FHNLEEIDDLRKYIDVQNLA----------SKYIKTQKGTKVGLKTAIEFFNLPIEKEFH 162

Query: 176 DAKADVYATLALVWLIRE 193
           DA  D + T  +   +  
Sbjct: 163 DAFNDAHYTAQIFKKLYT 180


>gi|134094115|ref|YP_001099190.1| oligoribonuclease [Herminiimonas arsenicoxydans]
 gi|133738018|emb|CAL61063.1| oligoribonuclease [Herminiimonas arsenicoxydans]
          Length = 198

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
           + V  D E  G D   D   + A V  D +   I    VF    +D+ L   +A      
Sbjct: 24  NLVWLDMEMTGLDCDNDCIIEIAVVVTDAELNIIGEGPVFAIHQSDETLDKMDAWNKGTH 83

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +   ++     V EA+    + +F           +  N+I  D  +      +    
Sbjct: 84  GRSGLIERVKASTVSEAQAEEELIEFLKKYVPKGKSPMCGNSICQDRRFMARGMPKLEAF 143

Query: 117 SYRW 120
            +  
Sbjct: 144 FHYR 147


>gi|307110015|gb|EFN58252.1| hypothetical protein CHLNCDRAFT_12089 [Chlorella variabilis]
          Length = 171

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 12/116 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    +  D E  G DV  D+  Q A +  D   E++           ++ L   +   V
Sbjct: 4   MKQPLIWIDLEMTGLDVESDQILQIAVICTDGAMEEVVEGPELAIHQPEEVLQTMNEWCV 63

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
              G +   Q         AE  +++ +F        I  N++  D  + R    R
Sbjct: 64  EQHGKSGLTQACRDSTTSLAEAEQQVLEF--------IAGNSVHVDLAFMRKHMPR 111


>gi|311743097|ref|ZP_07716905.1| oligoribonuclease [Aeromicrobium marinum DSM 15272]
 gi|311313777|gb|EFQ83686.1| oligoribonuclease [Aeromicrobium marinum DSM 15272]
          Length = 203

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 37/201 (18%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M +  V  D E  G  +  D   + A +  D + E +        KP  + L   +    
Sbjct: 1   MNDKLVWIDCEMTGLSLTHDALIEIAVLVTDFELEVLGPGIDLVVKPPQEALDQMNEVVT 60

Query: 59  FIT---GITPQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            +    G+  +  L  G+      A+    + ++   P    +  N++  D  +      
Sbjct: 61  RMHTASGLITE--LDAGLTLQDAQAQVLDHVREYVKEPGKAPLAGNSVGTDRAFLAR--- 115

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
               D             D+  +      +      +P     A S              
Sbjct: 116 ----DMPELENWLHYRVIDVSSIKELSRHW------FPRAYFAAPSK------------- 152

Query: 172 VNAHDAKADVYATLALVWLIR 192
              H A  D+  ++  +   R
Sbjct: 153 AGHHRALTDIAESIEELRYYR 173


>gi|269795775|ref|YP_003315230.1| 5' exoribonuclease [Sanguibacter keddieii DSM 10542]
 gi|269097960|gb|ACZ22396.1| oligoribonuclease (3'->5' exoribonuclease) [Sanguibacter keddieii
           DSM 10542]
          Length = 220

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 7/113 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D+  D   + A V  D +   +        +P D+ L   +     +
Sbjct: 8   DRIVWIDCEMTGLDLGADALVEVAAVVTDSELTVLGEGIDIIVRPPDEALEQMNDFVRDM 67

Query: 61  T---GITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
               G+  + A    +   EA+    +  F   P    +G N++  D  +   
Sbjct: 68  HTSSGLIDELAAGTTLADAEAQVLDYLRTFVPEPGKAPLGGNSVATDKMFLER 120


>gi|153802855|ref|ZP_01957441.1| oligoribonuclease [Vibrio cholerae MZO-3]
 gi|124121610|gb|EAY40353.1| oligoribonuclease [Vibrio cholerae MZO-3]
          Length = 156

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D  + +  + A +  D +   +           E    K  +     
Sbjct: 6   QNLIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +      +  +  V E E   +   F           I  N+I  D  +      
Sbjct: 66  HTASGL----VARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 122 RLEAYFHYR 130


>gi|77413703|ref|ZP_00789886.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus agalactiae 515]
 gi|77160248|gb|EAO71376.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus agalactiae 515]
          Length = 835

 Score = 60.2 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 73/241 (30%), Gaps = 39/241 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +    +  
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGCE-- 125

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    R D +++ +  Y                  + L  LA +  IE  +AH A 
Sbjct: 126 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           AD  AT  L   ++ K   L + + +         L +   +    +    F   +    
Sbjct: 168 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 227

Query: 239 L 239
            
Sbjct: 228 W 228


>gi|323174733|gb|EFZ60349.1| exonuclease family protein [Escherichia coli LT-68]
          Length = 220

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+      P                +Q          ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRLWPGIKYSNMALYRTRKLNVQT------PPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|256381025|ref|YP_003104685.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
 gi|255925328|gb|ACU40839.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 382

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 10/112 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D ET G     DR  + A V++DR                      P+   +  I 
Sbjct: 3   YAVVDVETTGFR-RSDRVVEVAVVQLDRDRRVTGEWCTL---LNPGRDLGPQ--HVHRIR 56

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
                        F+             ++  +N+ FD  +    F R   D
Sbjct: 57  AADVWGAPT----FALAAGALARRLAGRVLVAHNLAFDARFLAAEFGRVGVD 104


>gi|226372920|gb|ACO52085.1| Three prime repair exonuclease 2 [Rana catesbeiana]
          Length = 221

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 60/204 (29%), Gaps = 25/204 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGV----------RVDRQWEK-IESTEVFFCKPADDY 51
             F+  D E  G +  L +  +   V            +   E  +       C   D  
Sbjct: 6   KTFIFLDLEATGLNEDLPKITELCLVAVHASSLKNPTTNDSGEIQLPRVLDKLCLCIDPV 65

Query: 52  LP-DPEAVFITGITPQKALR-DGVVEAE-FSRRIHQFFSV--PNTCIIGYNNIRFDDYYS 106
            P  P+A  ITG+  +     +     E     + QF +      C++ +N   +D    
Sbjct: 66  KPLTPKASEITGLDNELLRTCEKQTFDESLINTVIQFINRQAQPVCLVAHNGFYYDYPLL 125

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
           +    +  +D          S    +D ++A      +    P    G  S         
Sbjct: 126 KTELLQQDHDL--------CSSILCVDSLQAFRYLHNEEKPRPEYIKGQFSLIEIH-RKF 176

Query: 167 NGIEHVNAHDAKADVYATLALVWL 190
            G E   +H A+ DV   +     
Sbjct: 177 FGKEPNFSHYAEGDVLTLILAFIC 200


>gi|152988793|ref|YP_001347003.1| ribonuclease T [Pseudomonas aeruginosa PA7]
 gi|166200015|sp|A6V1R8|RNT_PSEA7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|150963951|gb|ABR85976.1| ribonuclease T [Pseudomonas aeruginosa PA7]
          Length = 224

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 71/218 (32%), Gaps = 35/218 (16%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFF-CKPADDYL 52
           M   F     V+ D ET G + A D   + A   V +D +         FF  +P +   
Sbjct: 22  MARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGAN 81

Query: 53  PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +P A+  TGI        A+++     E  R I +          I+  +N  FD  + 
Sbjct: 82  IEPAALEFTGIKLDHPLRMAVQEEQALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFL 141

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R       +      S +D   +    Y  +                 L     A
Sbjct: 142 NAAVARTGIKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQA 182

Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREKKPKLFEYL 202
            G+E  N  AH A+ D   T  L   I  +  ++  ++
Sbjct: 183 AGMEFDNREAHSARYDTEKTAELFCGIVNRWKEMGGWM 220


>gi|91775826|ref|YP_545582.1| oligoribonuclease [Methylobacillus flagellatus KT]
 gi|91709813|gb|ABE49741.1| Exonuclease [Methylobacillus flagellatus KT]
          Length = 183

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 11/131 (8%)

Query: 1   MT----NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M     ++ +  D E  G     DR  + A V  D +   +  + V     +D  L   +
Sbjct: 1   MMPQHNDNLIWLDMEMSGLQPDSDRILEVAAVVTDAELNVLGESPVLVIHQSDAVLDGMD 60

Query: 57  AVF--ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
           A      G +   +K     + EA  S+++  F           +  N+I  D  +    
Sbjct: 61  AWNKGTHGRSGLIEKVKASSLDEAAASQQMIDFLKEHVPAGKSPMCGNSICQDRRFMARY 120

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 121 MPELEAYFHYR 131


>gi|238787531|ref|ZP_04631329.1| Oligoribonuclease [Yersinia frederiksenii ATCC 33641]
 gi|238724318|gb|EEQ15960.1| Oligoribonuclease [Yersinia frederiksenii ATCC 33641]
          Length = 181

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V     +D+   L D   V 
Sbjct: 5   QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLALMDEWNVR 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++       + +   +  +F        T  I  N++  D  +        
Sbjct: 65  THTGSGL-VERVKASPFNDHDAELQTIEFLQQWVPAGTSPICGNSVGQDRRFLFRYMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EAYFHYR 130


>gi|76786927|ref|YP_329306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus agalactiae A909]
 gi|77411574|ref|ZP_00787916.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae CJB111]
 gi|76561984|gb|ABA44568.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae A909]
 gi|77162359|gb|EAO73328.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae CJB111]
          Length = 835

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 73/241 (30%), Gaps = 39/241 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +    +  
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGCE-- 125

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    R D +++ +  Y                  + L  LA +  IE  +AH A 
Sbjct: 126 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           AD  AT  L   ++ K   L + + +         L +   +    +    F   +    
Sbjct: 168 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 227

Query: 239 L 239
            
Sbjct: 228 W 228


>gi|332090017|gb|EGI95117.1| exonuclease family protein [Shigella boydii 5216-82]
          Length = 220

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEKMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLESMSPELRLTLKH 215


>gi|317048499|ref|YP_004116147.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
 gi|316950116|gb|ADU69591.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
          Length = 222

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 55/188 (29%), Gaps = 38/188 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G         + A V V    + +       C    D     +A+ +  IT  
Sbjct: 4   VIDTETCGL---QGGVVEVASVDV-IDGQILNPMSDLIC---PDRPISHQAMAVHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +   R H       +     +N  FD         R         W    
Sbjct: 57  MVADKPTIE-QAIGRYH------GSPHYVAHNASFD---------RRMLPEMPGQW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R +         WP +  G  + +            ++AH A  D Y T A
Sbjct: 97  --ICTMTLARQL---------WPGQKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAA 145

Query: 187 LVWLIREK 194
           L+  I EK
Sbjct: 146 LLIRIMEK 153


>gi|258620689|ref|ZP_05715724.1| oligoribonuclease [Vibrio mimicus VM573]
 gi|258586887|gb|EEW11601.1| oligoribonuclease [Vibrio mimicus VM573]
          Length = 181

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  +     
Sbjct: 6   QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIVIHQPESELAKMDEWCTTT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +      +  +  V E E   +   F           I  N+I  D  +      
Sbjct: 66  HTASGL----VARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYRHMP 121

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 122 RLEAYFHYR 130


>gi|190149453|ref|YP_001967978.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307260640|ref|ZP_07542332.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307262772|ref|ZP_07544399.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189914584|gb|ACE60836.1| DNA polymerase III, epsilon subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306869717|gb|EFN01502.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306871917|gb|EFN03634.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 218

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 26/215 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D     + +    F  +P +    +P+++   G
Sbjct: 21  VIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANINPDSLKFNG 80

Query: 63  ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E     E  + + +          +I  +N  FD  + +    R    
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQAAVKR---- 136

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +  +    + + D            +   +       F           +   AH 
Sbjct: 137 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQMAKIPF-----------DDKQAHS 183

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
           A  D   T  L   +  +   L  +     +++ +
Sbjct: 184 ALYDTEKTTELFCAMVNRLKDLGGFPLVSDSESNV 218


>gi|168180760|ref|ZP_02615424.1| exonuclease family protein [Clostridium botulinum NCTC 2916]
 gi|182668520|gb|EDT80499.1| exonuclease family protein [Clostridium botulinum NCTC 2916]
          Length = 253

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 70/207 (33%), Gaps = 30/207 (14%)

Query: 4   HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           +++I+D E    +   +            Q   ++++  +  I++      KP      +
Sbjct: 2   NYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNAL-VKPEIYSNLN 57

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P    +T +T     +      E  +   +F +        +      + +   ++Y   
Sbjct: 58  PFVKNLTNLTMDSLNKAN-PFREVYKDFLEFLNKNRNIFCIWGMTDMKELFRNIVYYELD 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +S    + N             + A++   + +P   +   S  ++   L +  ++ + 
Sbjct: 117 TESMPKEYIN-------------VQAYTGKYLNYPKSINVGLSNAVE---LFHITKNNDF 160

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H+A  D + T  +   I  +K K   Y
Sbjct: 161 HNAFNDAFYTAEVFKKIYSEKIKTKIY 187


>gi|71892146|ref|YP_277878.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|123640967|sp|Q492U0|RNT_BLOPB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|71796252|gb|AAZ41003.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 217

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 59/200 (29%), Gaps = 29/200 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D  ++   + A    ++D      ++ +  F  K     +  PE++   G
Sbjct: 20  VVVDVETAGLDANINALLEIAVATFKMDEYGWLCVDGSLNFHIKSFPGAIIQPESLAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E E    I +           +  II  +N  FD  +      R  + 
Sbjct: 80  IDLNSPLRAAVTEQEALHEIFEMVRQGIKTQGCSRAIIVAHNAFFDHSFLMAAVERVSF- 138

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
                  N    + + D            +             L       G+      A
Sbjct: 139 ----MEKNPFHPFVMFDTATLSGLVFGQTV-------------LAKACACAGVFFDKNKA 181

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +  K
Sbjct: 182 HSALYDTERTAMLFCELVNK 201


>gi|59712989|ref|YP_205765.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59481090|gb|AAW86877.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
           [Vibrio fischeri ES114]
          Length = 213

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 66/205 (32%), Gaps = 20/205 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  V  D ET   +         A +++  +  ++ +++    K       + +++ I  
Sbjct: 28  DELVSIDCETTSLNPNHAELVSIAAIKI--KNNRVLTSQTIHLKLTPPQSLNSDSIKIHQ 85

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +  Q     G+ E +   ++ +F    N  I+GY+  R+D         R+F      S 
Sbjct: 86  LRHQDL-HHGLSEQQAMTQLLEFI--GNRHIVGYHI-RYDKKILDRACLRHFSHPLPNS- 140

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                      ++   + +     +            ++ ++   G+   + HDA  D  
Sbjct: 141 -----------LIEVSHIYHNKLERLLPNAYY--DLSIEAISKHLGLPQADRHDALEDAI 187

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207
           A   +   +            +  +
Sbjct: 188 AAALIYVRLTHGDFPDIPSSKNAHS 212


>gi|307823995|ref|ZP_07654222.1| ribonuclease T [Methylobacter tundripaludum SV96]
 gi|307734779|gb|EFO05629.1| ribonuclease T [Methylobacter tundripaludum SV96]
          Length = 207

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 54/198 (27%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   +   + A V V+       +I         P  +   D  A+   G
Sbjct: 18  VVVDIETAGFNPKKNALLEIAAVIVELNSNSDLEITERYTTHVIPFKNAELDEAALKFNG 77

Query: 63  ITP----QKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    + A+ +        + I +     N    I+  +N  FD  +      R    
Sbjct: 78  IDPHHPFRMAIEEKDALHMLFKPIKEAVKRNNCTRAILVGHNPAFDIGFLNAAIQRTQIK 137

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  +    +   D            +                       ++  AH 
Sbjct: 138 ------RSPFHPFSTFDTATLGGLVYQQTV-----------LAKIAQTAGLDWDNEKAHS 180

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L  +I  +
Sbjct: 181 ALYDAEKTAELFCMIVNR 198


>gi|241573853|ref|XP_002403219.1| three prime repair exonuclease, putative [Ixodes scapularis]
 gi|215500196|gb|EEC09690.1| three prime repair exonuclease, putative [Ixodes scapularis]
          Length = 192

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 57/194 (29%), Gaps = 20/194 (10%)

Query: 3   NHFVIYDYETFGRDVALDR---PAQFAGVRVDR-QWEKIEST-----EVFFCKPADDYLP 53
              V +D ET        +     + A V VDR  +EK                  +   
Sbjct: 8   QTLVFFDLETTSL-PRAGQRVGITELALVAVDRAHFEKQAKPTFRVLNKLTLCIRPEVYL 66

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFY 111
           +P A   +G++         +  +    +  F +      C++ +N   FD    R    
Sbjct: 67  EPMAAQKSGMSEALLGNQ-RLFRDAVPSLRAFLASLPAPVCLLAHNGDYFDFPILRVSSR 125

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R   D        G       D ++A+            +  GA  + L  L        
Sbjct: 126 RVQGD-------LGLPGLQCCDTIKALRQIVQAAPPPKKKVKGAGPYSLDMLYKRFCGRR 178

Query: 172 VNAHDAKADVYATL 185
            NAH A+ D    L
Sbjct: 179 SNAHQAEQDCVDLL 192


>gi|152978666|ref|YP_001344295.1| oligoribonuclease [Actinobacillus succinogenes 130Z]
 gi|171704275|sp|A6VN13|ORN_ACTSZ RecName: Full=Oligoribonuclease
 gi|150840389|gb|ABR74360.1| Exonuclease RNase T and DNA polymerase III [Actinobacillus
           succinogenes 130Z]
          Length = 182

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 15/131 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +                K +D  + 
Sbjct: 5   KENLIWIDLEMTGLDPEQERIIEIATIVTDKNLNILAEGPVLAVHQPNQLLDKMSDWCIK 64

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
              A    G+  ++     + E     +   F  +        I  N++  D  +     
Sbjct: 65  THTA---NGL-VERVKASKLTERAAELQTIDFLKLWVPKGASPICGNSVAQDKRFLFKYM 120

Query: 111 YRNFYDSYRWS 121
                  +   
Sbjct: 121 PDLADYFHYRH 131


>gi|149203420|ref|ZP_01880390.1| DNA polymerase III subunit epsilon [Roseovarius sp. TM1035]
 gi|149143253|gb|EDM31292.1| DNA polymerase III subunit epsilon [Roseovarius sp. TM1035]
          Length = 172

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 11/121 (9%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE-----KIESTEVFFCKPADDYLPDPEAVFI 60
           ++ D ET G     D   Q A +    +       +I+    F            EA  +
Sbjct: 50  LVLDVETTGLSHEADEVIQLAMLPFTYELNTGRILEIDHDRGFEGLREPGVPISEEANLV 109

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TG+T +      +        I +   V +  ++  +N  FD      ++       +  
Sbjct: 110 TGLTAETVAGQTIN-----GAIVEAL-VADADLVIAHNSSFDRVMVEKLWPCFAEKPWGC 163

Query: 121 S 121
           +
Sbjct: 164 T 164


>gi|306834330|ref|ZP_07467447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           bovis ATCC 700338]
 gi|304423503|gb|EFM26652.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           bovis ATCC 700338]
          Length = 195

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ +D E F          Q + V+  ++  +++S + +      D         +TGIT
Sbjct: 7   YIAFDLE-FNTVAEKSHIIQVSAVKF-KEGHEVDSFDTY---VYTDVPLQSFINGLTGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +K         E       F     T ++GYN ++ D                      
Sbjct: 62  SEKIANAPK-LDEVLADFKTFVGE--TALVGYNALKSDLPLLAENELD------------ 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +  +  +     +  +  +G  S KL  +A   GI   + H++  D   T
Sbjct: 107 -------LTELYKVDLYDEAFERRSTDLNGIASLKLTSVAEFLGIS-GHGHNSLEDARMT 158

Query: 185 LALVWLIREKKPK 197
             +     E    
Sbjct: 159 ALVYEKFMEFDEN 171


>gi|302537604|ref|ZP_07289946.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302446499|gb|EFL18315.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 253

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 8/112 (7%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
           +D ET G +    R    A V V                 AD  +P P EA  I GI+ +
Sbjct: 22  FDLETTGTEPGESRIVTAAVVEVRG-----GEVRARRGWLADPGIPIPGEAAAIHGISTE 76

Query: 67  KALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           +A+ +G   AE +  +            ++   N  FD         R    
Sbjct: 77  RAVAEGRPAAEVAEEVAAALVEHWRGGAVVVAYNAAFDLTLLSAELARYRLP 128


>gi|253773201|ref|YP_003036032.1| exodeoxyribonuclease X [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161904|ref|YP_003045012.1| exodeoxyribonuclease X [Escherichia coli B str. REL606]
 gi|297519020|ref|ZP_06937406.1| exodeoxyribonuclease X [Escherichia coli OP50]
 gi|242377565|emb|CAQ32320.1| exonuclease X [Escherichia coli BL21(DE3)]
 gi|253324245|gb|ACT28847.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973805|gb|ACT39476.1| exodeoxyribonuclease X [Escherichia coli B str. REL606]
 gi|253977999|gb|ACT43669.1| exodeoxyribonuclease X [Escherichia coli BL21(DE3)]
          Length = 220

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAIAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|149927960|ref|ZP_01916210.1| oligoribonuclease [Limnobacter sp. MED105]
 gi|149823399|gb|EDM82632.1| oligoribonuclease [Limnobacter sp. MED105]
          Length = 191

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 9/167 (5%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFITGIT 64
             D E  G D   D+  + A V  D +   +E   V     +DD L   +A      G +
Sbjct: 2   WVDMEMTGLDPFNDKVIEVAVVVTDSELNVLEEGPVLAIHQSDDILAGMDAWNTSTHGKS 61

Query: 65  --PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
               +     + EA+    + +F +    P    +  N+I  D  +     Y    ++Y 
Sbjct: 62  GLTARVKESVIDEAQAEELLIEFLTKYIGPGKSPMCGNSICQDRRFM--AKYMPKLEAYF 119

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
              +   S    L              +            + +L   
Sbjct: 120 HYRNLDVSTLKELCKRWNPTTARKFVKKTKHTALADIHESIDELRFY 166


>gi|15598724|ref|NP_252218.1| ribonuclease T [Pseudomonas aeruginosa PAO1]
 gi|107103040|ref|ZP_01366958.1| hypothetical protein PaerPA_01004109 [Pseudomonas aeruginosa PACS2]
 gi|116051527|ref|YP_789637.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890245|ref|YP_002439109.1| ribonuclease T [Pseudomonas aeruginosa LESB58]
 gi|254242188|ref|ZP_04935510.1| ribonuclease T [Pseudomonas aeruginosa 2192]
 gi|296387969|ref|ZP_06877444.1| ribonuclease T [Pseudomonas aeruginosa PAb1]
 gi|313108873|ref|ZP_07794856.1| ribonuclease T [Pseudomonas aeruginosa 39016]
 gi|14548235|sp|Q9HY82|RNT_PSEAE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|122260667|sp|Q02QZ9|RNT_PSEAB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|9949677|gb|AAG06916.1|AE004773_5 ribonuclease T [Pseudomonas aeruginosa PAO1]
 gi|115586748|gb|ABJ12763.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195566|gb|EAZ59629.1| ribonuclease T [Pseudomonas aeruginosa 2192]
 gi|218770468|emb|CAW26233.1| ribonuclease T [Pseudomonas aeruginosa LESB58]
 gi|310881358|gb|EFQ39952.1| ribonuclease T [Pseudomonas aeruginosa 39016]
          Length = 224

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 71/218 (32%), Gaps = 35/218 (16%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFF-CKPADDYL 52
           M   F     V+ D ET G + A D   + A   V +D +         FF  +P +   
Sbjct: 22  MARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGAN 81

Query: 53  PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +P A+  TGI        A+++     E  R I +          I+  +N  FD  + 
Sbjct: 82  IEPAALEFTGIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFL 141

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R       +      S +D   +    Y  +                 L     A
Sbjct: 142 NAAVARTGIKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQA 182

Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREKKPKLFEYL 202
            G+E  N  AH A+ D   T  L   I  +  ++  ++
Sbjct: 183 AGMEFDNREAHSARYDTEKTAELFCGIVNRWKEMGGWM 220


>gi|226307350|ref|YP_002767310.1| oligoribonuclease [Rhodococcus erythropolis PR4]
 gi|229494052|ref|ZP_04387821.1| oligoribonuclease [Rhodococcus erythropolis SK121]
 gi|226186467|dbj|BAH34571.1| oligoribonuclease [Rhodococcus erythropolis PR4]
 gi|229319121|gb|EEN84973.1| oligoribonuclease [Rhodococcus erythropolis SK121]
          Length = 202

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 12/150 (8%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAV-F 59
            +  V  D E  G  +  D+  + A +  D     +           DD L   P+ V  
Sbjct: 5   QDKLVWIDCEMTGLRLESDKLIEIAALVTDSDLNILGEGVDIVIHADDDALAAMPDVVKK 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112
           +    G+T ++  +  V  AE  + +  +         T  +  N+I  D  +       
Sbjct: 65  MHAKSGLT-EEVRKSTVTLAEAEKEVLAYIRKHVPVAGTAPLAGNSIATDRGFISR--DM 121

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
              D+Y        S    L        + 
Sbjct: 122 TALDTYLHYRMIDVSSIKELSRRWYPRIYF 151


>gi|167563592|ref|ZP_02356508.1| oligoribonuclease [Burkholderia oklahomensis EO147]
 gi|167570756|ref|ZP_02363630.1| oligoribonuclease [Burkholderia oklahomensis C6786]
          Length = 201

 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + V  D E  G +   DR  + A V  +   +      VF    +D+ L   D       
Sbjct: 19  NLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKNTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +    +     V EA+ + +I  F      P    +  N+I  D  +           
Sbjct: 79  GRSGLIDRVRASTVTEADAAAQIEAFLGQHVPPGKSPMCGNSICQDRRFMARWMPELERF 138

Query: 117 SYRW 120
            +  
Sbjct: 139 FHYR 142


>gi|319788791|ref|YP_004090106.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
 gi|315450658|gb|ADU24220.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
          Length = 177

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 60/205 (29%), Gaps = 30/205 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              ++++D ET   +   +R +    + V       E     F         D     +T
Sbjct: 1   MYRYIVFDVET--PNRYNNRMSAIG-IAVIENGAVTEEY---FSYVDPQTYFDRFNTQLT 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI             E   RI    S     ++  +N  FD    +         +Y   
Sbjct: 55  GINKYTVSGAP-TFPELWERIEPIMSSG---VLAAHNAVFDLGVLKK-----CLKAYGIE 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W N       + + R              R     S KL  L    GI   + H A +D 
Sbjct: 106 WKNTVKYCCTVQMGR--------------RVLPGISHKLNVLCEHYGIALDH-HKADSDS 150

Query: 182 YATLALVWLIREKKPKLFEYLYDYR 206
            A   ++    E   +  E++  +R
Sbjct: 151 RACADILLRYFESGAQEREHIRTFR 175


>gi|224083745|ref|XP_002307108.1| predicted protein [Populus trichocarpa]
 gi|222856557|gb|EEE94104.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 25/190 (13%)

Query: 5   FVIYDYETFGRDVALDR--PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            V +D ET   + A  R    +F  + V  R+  +++S      +P D      ++    
Sbjct: 12  IVFFDLETTVPNKAGQRFWVLEFGAIIVCPRKLVELDSYSTLI-RPEDLSAVALKSGRCD 70

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +        E E + +I    +       G+N  RFD    +  F      +    
Sbjct: 71  GITREAVANAPAFE-EVADKIFTILN--GRIWAGHNIQRFDCVRIKEAFAEIGRPAP--- 124

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                           +  F   G+        A + K+  LA   G+     H +  DV
Sbjct: 125 --------------MPVGMFDSLGVLTEKFGRRAGNMKMATLATYFGLGQQK-HRSLEDV 169

Query: 182 YATLALVWLI 191
              L ++   
Sbjct: 170 RMNLEVLKHC 179


>gi|194433962|ref|ZP_03066234.1| exodeoxyribonuclease X [Shigella dysenteriae 1012]
 gi|194417834|gb|EDX33931.1| exodeoxyribonuclease X [Shigella dysenteriae 1012]
 gi|320182620|gb|EFW57509.1| Exodeoxyribonuclease X [Shigella boydii ATCC 9905]
 gi|332095285|gb|EGJ00309.1| exonuclease family protein [Shigella dysenteriae 155-74]
          Length = 220

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLESMSPELRLTLKH 215


>gi|84386967|ref|ZP_00989991.1| oligoribonuclease [Vibrio splendidus 12B01]
 gi|84378257|gb|EAP95116.1| oligoribonuclease [Vibrio splendidus 12B01]
          Length = 181

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
            + +  D E  G D    +  + A +  D +   +     +   +P  +     E    T
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQPQSELDKMDEWCTTT 65

Query: 62  GITPQKAL---RDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
                         V E E  ++  +F           I  N+I  D  +          
Sbjct: 66  HTGSGLVKRIQESTVSEQEAIQQTIEFLEKWVPKGKSPICGNSIGQDRRFLYKHMPELEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|311104954|ref|YP_003977807.1| oligoribonuclease [Achromobacter xylosoxidans A8]
 gi|310759643|gb|ADP15092.1| oligoribonuclease [Achromobacter xylosoxidans A8]
          Length = 181

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60
           N  V  D E  G D   +R  + A V  +     +    V      D  L   ++     
Sbjct: 6   NRLVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVVHQPDSLLDAMDSWNKST 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    K     + E+E    +  F +         +  N I  D  +      R   
Sbjct: 66  HGKSGLIDKVKASTISESEAEDTLLAFLAQHVPAGKSPLCGNTISQDRRFMFAYMPRLEQ 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 FFHYR 130


>gi|56707099|ref|YP_170696.1| putative exonuclease [Streptomyces albulus]
 gi|56675918|dbj|BAD80780.1| putative exonuclease [Streptomyces albulus]
          Length = 288

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 46/168 (27%), Gaps = 10/168 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET   D    +  + A +        +        KP +    DP+A  +  +T 
Sbjct: 131 VLLDTETTALD---GQIIEIA-ILDAATGRPL---LDTLVKPTEGVEIDPQAHAVHRLTL 183

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          +   ++ +     +  I+ Y+          +         +    DN 
Sbjct: 184 EDLADAP-PWEKVLPKVRKLTK--DRTILAYHAAFDRGRIIDHTEQVGKRPMHLADPDNW 240

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                           S +G      D       L+ ++  +G  H  
Sbjct: 241 WCLMQARSQFYGHGRRSLNGPHRAMGDCRKERELLKKISEGHGRLHQP 288


>gi|93006558|ref|YP_580995.1| oligoribonuclease [Psychrobacter cryohalolentis K5]
 gi|92394236|gb|ABE75511.1| Exonuclease [Psychrobacter cryohalolentis K5]
          Length = 195

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 35/126 (27%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
               V  D E  G D   D   + A V  D     +    VF  K +D  L   D     
Sbjct: 17  KKGLVWIDLEMTGLDTLNDEIIEIATVVTDEDLNVLAEGPVFAIKVSDQKLNGMDDWNTK 76

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +  R  V  AE      +F +         +  N+I  D  +         
Sbjct: 77  QHGQSGLVDRVRRSTVTLAEAEAETIKFLNKWVDSGKSPMCGNSICQDRRFMARQMPELE 136

Query: 115 YDSYRW 120
              +  
Sbjct: 137 RFFHYR 142


>gi|145628675|ref|ZP_01784475.1| ribonuclease T [Haemophilus influenzae 22.1-21]
 gi|145638764|ref|ZP_01794373.1| ribonuclease T [Haemophilus influenzae PittII]
 gi|144979145|gb|EDJ88831.1| ribonuclease T [Haemophilus influenzae 22.1-21]
 gi|145272359|gb|EDK12267.1| ribonuclease T [Haemophilus influenzae PittII]
 gi|309750254|gb|ADO80238.1| Ribonuclease T [Haemophilus influenzae R2866]
          Length = 229

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 55/198 (27%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  KP +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q        +     II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRRQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +M                            A     +   AH 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAKLFCYMVNH 203


>gi|325917447|ref|ZP_08179656.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536321|gb|EGD08108.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 194

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 54/207 (26%), Gaps = 48/207 (23%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
           +  +  D E  G D   D   + A +  D Q   +              +  P A     
Sbjct: 9   DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPEL-------AIAHPLATLEAM 61

Query: 60  ------ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                     +   Q+ L   V  A+   +   F           +  N+I  D  +   
Sbjct: 62  DEWNRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHR 121

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
              R     +           D+  +      ++P                      ANG
Sbjct: 122 QMSRLERYFHYR-------NLDVSTIKELARRWAPTV--------------------ANG 154

Query: 169 IEHVNAHDAKADVYATLALVWLIREKK 195
               +AH A +DV  ++  +   R+  
Sbjct: 155 FAKSSAHTALSDVRDSIDELRHYRQFM 181


>gi|320528160|ref|ZP_08029325.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
           moorei F0204]
 gi|320131508|gb|EFW24073.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
           moorei F0204]
          Length = 186

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 54/188 (28%), Gaps = 31/188 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFA--GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
               V  D+ET     A ++ A     GV V      I+          +     P  + 
Sbjct: 1   MTKIVAIDFET-----ANNQMASVCSVGVAVMEDGVIIDHYYSLIKPEENVGYFSPYNIR 55

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GIT +         +E    +  +F      +I  +N RFD    +            
Sbjct: 56  IHGITARDVKGAP-TFSEIYSELTGYFED---AVIVAHNARFDMSCLKQTCLNTGKKIPV 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             +          D +        +              +L D+    GIE  + H+A +
Sbjct: 112 LEY---------FDTVELCKRVFSNLEH----------HRLNDVCEYIGIELDH-HNALS 151

Query: 180 DVYATLAL 187
           D    L +
Sbjct: 152 DANGCLEI 159


>gi|90407113|ref|ZP_01215302.1| oligoribonuclease [Psychromonas sp. CNPT3]
 gi|90311835|gb|EAS39931.1| oligoribonuclease [Psychromonas sp. CNPT3]
          Length = 179

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 9/128 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFI 60
            N+ +  D E  G +   D   + A +  D     +E         P  +     E    
Sbjct: 3   KNNLIWIDLEMTGLNPETDLIIEIATIVTDSDLNVLEEGPAFVIHAPKQNMDAMDEWCTT 62

Query: 61  T----GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+T Q+ L   +  A+  +    F           +  N+I  D  +        
Sbjct: 63  HHGDSGLT-QRVLESDISCAQAEQATLAFLKKWTLQGASPLCGNSIGQDRRFLVRYMPEL 121

Query: 114 FYDSYRWS 121
               +  S
Sbjct: 122 EAYFHYRS 129


>gi|13097411|gb|AAH03445.1| Rexo2 protein [Mus musculus]
          Length = 205

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 7   MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 66

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      V   +       F      P  C +  N++  D  +      + 
Sbjct: 67  EHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQF 126

Query: 114 FYDSYRW 120
               +  
Sbjct: 127 MKHLHYR 133


>gi|56707385|ref|YP_169281.1| oligoribonuclease [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110669856|ref|YP_666413.1| oligoribonuclease [Francisella tularensis subsp. tularensis FSC198]
 gi|224456460|ref|ZP_03664933.1| oligoribonuclease [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370915|ref|ZP_04986920.1| oligoribonuclease [Francisella tularensis subsp. tularensis FSC033]
 gi|254874223|ref|ZP_05246933.1| oligoribonuclease [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81820821|sp|Q5NI61|ORN_FRATT RecName: Full=Oligoribonuclease
 gi|123169637|sp|Q14JL3|ORN_FRAT1 RecName: Full=Oligoribonuclease
 gi|56603877|emb|CAG44861.1| Oligoribonuclease [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320189|emb|CAL08244.1| Oligoribonuclease [Francisella tularensis subsp. tularensis FSC198]
 gi|151569158|gb|EDN34812.1| oligoribonuclease [Francisella tularensis subsp. tularensis FSC033]
 gi|254840222|gb|EET18658.1| oligoribonuclease [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158524|gb|ADA77915.1| oligoribonuclease [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 178

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           ++ +  D E  G DV   +  + A +  D+    I   E       D+ L   +   +  
Sbjct: 5   DNLIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKT 64

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+T Q+     +      ++I +F        +  +  N+I  D  +     Y   
Sbjct: 65  HTETGLT-QRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFL--AKYMPN 121

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
            D Y        +   LL+                + DD   S
Sbjct: 122 IDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDDIRES 164


>gi|224824186|ref|ZP_03697294.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
           2002]
 gi|224603605|gb|EEG09780.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
           2002]
          Length = 181

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 11/128 (8%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N+ +  D E  G +   DR  + A V  D Q   +  + V      D  L         
Sbjct: 5   QNNLIWLDMEMTGLNPDSDRIIEIAVVVTDGQLNVLAESPVLAIHQPDSVL--DGMDEWN 62

Query: 62  GITP------QKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYR 112
             T       ++     + E +   ++  F        T  +  N+I  D  +      R
Sbjct: 63  KSTHARSGLIERVKASTLSETDAEEQMLAFLQEYVPAKTSPMCGNSICQDRRFMARGMPR 122

Query: 113 NFYDSYRW 120
                +  
Sbjct: 123 LEAFFHYR 130


>gi|168752095|ref|ZP_02777117.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113]
 gi|168758576|ref|ZP_02783583.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401]
 gi|168770825|ref|ZP_02795832.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486]
 gi|168783143|ref|ZP_02808150.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076]
 gi|168802378|ref|ZP_02827385.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508]
 gi|195939745|ref|ZP_03085127.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4024]
 gi|208810405|ref|ZP_03252281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206]
 gi|208816703|ref|ZP_03257823.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045]
 gi|208820052|ref|ZP_03260372.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042]
 gi|209398184|ref|YP_002270926.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115]
 gi|254793468|ref|YP_003078305.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14359]
 gi|188013988|gb|EDU52110.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113]
 gi|188999500|gb|EDU68486.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076]
 gi|189354630|gb|EDU73049.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401]
 gi|189360293|gb|EDU78712.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486]
 gi|189375616|gb|EDU94032.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508]
 gi|208724921|gb|EDZ74628.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206]
 gi|208731046|gb|EDZ79735.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045]
 gi|208740175|gb|EDZ87857.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042]
 gi|209159584|gb|ACI37017.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115]
 gi|209767642|gb|ACI82133.1| exonuclease X [Escherichia coli]
 gi|209767646|gb|ACI82135.1| exonuclease X [Escherichia coli]
 gi|254592868|gb|ACT72229.1| DNA exonuclease X [Escherichia coli O157:H7 str. TW14359]
 gi|326343773|gb|EGD67535.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1125]
          Length = 220

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIVNPMSHL---VHPDRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADMTGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|221135181|ref|ZP_03561484.1| ribonuclease T [Glaciecola sp. HTCC2999]
          Length = 212

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 63/208 (30%), Gaps = 26/208 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A   VR+D         E+ +   P +    +P A+   G
Sbjct: 17  VIIDVETAGFNAQTDALLEIAAVTVRMDEAGMLHPDQEIHYHINPFEGANIEPAAIEFNG 76

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I    ALR  V E E  + + +  S           +I  +N  FD  +      R    
Sbjct: 77  IKVDCALRGAVDETEAMKGLSKAISKLQKAANCQRSVIVAHNASFDMSFVNAALART--- 133

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                      R      +      S D     +   G T       A     +   AH 
Sbjct: 134 --------NVKRSPFHPFV------SFDTTSLAALTLGQTVLVKACEAANIAFDQKQAHG 179

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204
           A  D   T  L   +  +   L  +  +
Sbjct: 180 ALYDAQRTAELFCFMMNRYQSLGGWPLE 207


>gi|328850543|gb|EGF99706.1| hypothetical protein MELLADRAFT_94133 [Melampsora larici-populina
           98AG31]
          Length = 194

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 56/195 (28%), Gaps = 17/195 (8%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVF 59
            +  V  D E  G D++ ++  + A +  D+  E ++    +      + L         
Sbjct: 5   QDRLVWIDCEMTGLDLSKEQIIEIACIITDKNLEPLDEGISYVIGVEKNILDQMGEWCTV 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP-----NTCIIGYNNIRFDDYYSRNIFYR 112
             G +   ++ L+      +  + +  +            +I  N++  D  +       
Sbjct: 65  QHGKSGLTEECLKSKFSLKQVDQLVRDYIERHIPNSRGQAVIAGNSVYADKAFLLKKISN 124

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
            F   +    +            R +   S   +      D     K             
Sbjct: 125 FFIMIWNVKQEKDMPITAEYLHYRIVDVSSIKELARRWNHDVFLKSK--------DTSTP 176

Query: 173 NAHDAKADVYATLAL 187
           +AH A  D+  ++ +
Sbjct: 177 SAHRALDDIRDSIKV 191


>gi|330447523|ref|ZP_08311171.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491714|dbj|GAA05668.1| exonuclease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 185

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 8/126 (6%)

Query: 3   NHFVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           +  V +D E      GR        +     +D    KI      + +PA D +  P   
Sbjct: 4   DRIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEI-SPFCT 62

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI P+   ++G   +   + I Q F   +     +     DD   +           
Sbjct: 63  ELTGIKPEIVEKNGKPLSVILKSIEQKFGGRHKIYAAW---GHDDRILKKECLAKDLKVP 119

Query: 119 RWSWDN 124
              + N
Sbjct: 120 FREYLN 125


>gi|73540610|ref|YP_295130.1| oligoribonuclease [Ralstonia eutropha JMP134]
 gi|72118023|gb|AAZ60286.1| Exonuclease [Ralstonia eutropha JMP134]
          Length = 210

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 12/140 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ V  D E  G     DR  + A V  D +   +    V     +D  L   D      
Sbjct: 14  NNLVWLDMEMTGLSPDSDRIIEVAVVVTDSELNILAEGPVLVIHQSDAVLDGMDNWNKGT 73

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN-----IF 110
            G +    K     + E +    +  F       +   +  N+I  D  +          
Sbjct: 74  HGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQDRRFMARYMPKLEA 133

Query: 111 YRNFYDSYRWSWDNGNSRWD 130
           + ++ +    +      RW+
Sbjct: 134 FFHYRNLDVSTLKELCKRWE 153


>gi|42518811|ref|NP_964741.1| hypothetical protein LJ0886 [Lactobacillus johnsonii NCC 533]
 gi|41583097|gb|AAS08707.1| hypothetical protein LJ_0886 [Lactobacillus johnsonii NCC 533]
          Length = 177

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET             A V V    E ++               D   + I GI
Sbjct: 2   NFTAMDFETANSHPESA--CSLALVMVRNN-EIVDRFYTV---INPQMPFDGRNIKIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE   +I +        ++  +N RFD         R    +  +   
Sbjct: 56  TAEDVKNAP-TMAEVWPKIKKL--YQPGMLVAAHNARFDCRVMEKSLARYNIPAPHY--- 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L   +A   +               + KL  ++ A  I   + H+A +D  A
Sbjct: 110 ---FAIDTLATSKAFEPYL-------------PNHKLDTVSEALNINLWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CAGIL 158


>gi|296118714|ref|ZP_06837290.1| oligoribonuclease [Corynebacterium ammoniagenes DSM 20306]
 gi|295968203|gb|EFG81452.1| oligoribonuclease [Corynebacterium ammoniagenes DSM 20306]
          Length = 222

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 8/118 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D       + A +  D +   I           D+ L   D     +
Sbjct: 21  DRLVWIDLEMTGLDPKRHTIVEIAAIITDAELNVIGEGLDIVIHATDEELSRMDDFVTNM 80

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112
              +   ++         E    + +         +   +  N+I  D  + R    R
Sbjct: 81  HNSSGLTEEIKAATTTLKEAETAVLELIEKHCDPEHPAPLAGNSIATDRTFIREYMPR 138


>gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 309

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  + IE       KP +     P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGKIIEEVHHLI-KPKEMRFM-PINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+    + +   +   +I  +F+     ++  +N  FD         RN  + Y     
Sbjct: 57  RPRMVQDE-LEFDKVWEKIKHYFNEN---LVIAHNASFDISVL-----RNTLELYNIE-- 105

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  +  M+    F  +              +L  +    G E    HDA AD  A
Sbjct: 106 --MPSFQYICTMKLSKNFYSNLDN----------ARLNTVNNFLGYEF-KHHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CGNIL 157


>gi|326470961|gb|EGD94970.1| RNA exonuclease Rex2 [Trichophyton tonsurans CBS 112818]
 gi|326482205|gb|EGE06215.1| RNA exonuclease Rex2 [Trichophyton equinum CBS 127.97]
          Length = 188

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 17/132 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE---------STEVFFCKPADDYL 52
           ++  V  D E  G D A DR  Q      D Q   +E           +    +     +
Sbjct: 7   SDPLVWIDCEMTGLDPANDRILQICCYITDAQLNLLEPEGFEAVVHQPQEVLDRMNAWCI 66

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRN 108
                  +T       L       E +R +  +         T ++  N++  D  +   
Sbjct: 67  DTHGRSGLT----AAVLASPTTAEEAARDLLAYIKQYVPTQRTALLAGNSVHADRAFLAQ 122

Query: 109 IFYRNFYDSYRW 120
             Y    D   +
Sbjct: 123 PPYVQVLDWLHY 134


>gi|312881846|ref|ZP_07741617.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370492|gb|EFP97973.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 215

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 60/199 (30%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   +   +D     I  ST  F  +P +    + EA+   G
Sbjct: 20  VVIDVETAGFNADTDALLEICAITLTMDEFGNLIPASTLHFHVEPFEGANIEKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V EAE  + I++        +  N  II  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCNRAIIVAHNATFDHNFVMAASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                           ++  AH
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------TAGMEFDNKEAH 182

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  K
Sbjct: 183 SALYDTQKTAELFCGIVNK 201


>gi|325568813|ref|ZP_08145106.1| exonuclease [Enterococcus casseliflavus ATCC 12755]
 gi|325157851|gb|EGC70007.1| exonuclease [Enterococcus casseliflavus ATCC 12755]
          Length = 177

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +         A V V +  + +            +     + + I GI
Sbjct: 2   NFIAMDFET--ANYQKHSACSLALVMV-QDSKIVGEYYTL---IQPETEFFWKNIQIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+          +  ++I Q+    N+ I+ +N        +         D Y  S  
Sbjct: 56  RPEDVQEAPK-FPDVWKQIQQY-YQLNSLIVAHNAGFDTGVLAGC------LDYYGLSQP 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N    +  L  +R      P+              KL  +     I  +N HDA  D  A
Sbjct: 108 N----YLSLCTVRTSRKLYPEFTN----------HKLNTVCEQLQIPLLNHHDALEDSRA 153

Query: 184 TLALVWLIREK 194
              ++    E+
Sbjct: 154 CAQILLRQEEE 164


>gi|320547520|ref|ZP_08041806.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           equinus ATCC 9812]
 gi|320447865|gb|EFW88622.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           equinus ATCC 9812]
          Length = 195

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ +D E F     +    Q + V+  +  E+I+S + +      D         +TGIT
Sbjct: 7   YIAFDLE-FNTVAEVSHIIQVSAVKF-KDGEEIDSFDTY---VYTDVPLQSFINGLTGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +K  +      +       F     T ++GYN ++ D                      
Sbjct: 62  SEKIAKAPK-LDKVLANFKDFVGK--TALVGYNALKSDLPLLAENNLD------------ 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +  +  +     +  S  +G  + KL  +A   GI   + H++  D   T
Sbjct: 107 -------LTELYKVDLYDEAYERRSSDLNGIANLKLTSVADFLGIS-GHGHNSLEDARMT 158

Query: 185 LALVWLIREKKPK 197
             +     E    
Sbjct: 159 ALVYEKFMEFDEN 171


>gi|148927126|ref|ZP_01810755.1| oligoribonuclease [candidate division TM7 genomosp. GTL1]
 gi|147887420|gb|EDK72865.1| oligoribonuclease [candidate division TM7 genomosp. GTL1]
          Length = 184

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 15/133 (11%)

Query: 1   MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK------PADDYL 52
           M      +  D E  G D   DR  + A +  D  +E++   E    +        DD++
Sbjct: 7   MKKHAKLLWLDLEMTGLDPQRDRVLEVAAIATDWNFEEMAVIESVVHQSPKVLDLMDDWV 66

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF----SVPNTCIIGYNNIRFDDYYSRN 108
               A    G+T ++     V E +    + QF        +  ++  N+I  D  + R 
Sbjct: 67  RSQHASS--GLT-ERVRASDVSETDAEDILLQFIDSVYKDGDPVVLAGNSIHQDRRFIRQ 123

Query: 109 IFYRNFYDSYRWS 121
            + R     +   
Sbjct: 124 YWQRLDARLHYRM 136


>gi|113461243|ref|YP_719312.1| oligoribonuclease [Haemophilus somnus 129PT]
 gi|112823286|gb|ABI25375.1| oligoribonuclease [Haemophilus somnus 129PT]
          Length = 184

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 34/131 (25%), Gaps = 15/131 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +          +        +  + 
Sbjct: 5   KQNLIWIDLEMTGLDPDKERIIEIATIVTDKDLNILAEGPVLAIHQSNELLNNMNEWCVK 64

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
              +    G+  ++     + E     +   F           I  N++  D  +  N  
Sbjct: 65  THTS---NGL-IERVKNSKLTERAAELQTLDFLKKWVPKGVSPICGNSVAQDKRFLVNYM 120

Query: 111 YRNFYDSYRWS 121
                  +   
Sbjct: 121 PELAEYFHYRH 131


>gi|329667640|gb|AEB93588.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii DPC 6026]
          Length = 177

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET             A V V    E ++               D   + I GI
Sbjct: 2   NFTAMDFETANSHPESA--CSLALVMVRNN-EIVDRFYTV---INPQMPFDGRNIRIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE   +I +        ++  +N RFD         R    +  +   
Sbjct: 56  TAEDVKNAP-TMAEVWPKIKKL--YQPGMLVAAHNARFDCRVMEKSLARYNIPAPHY--- 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L   +A   +               + KL  ++ A  I   + H+A +D  A
Sbjct: 110 ---FAIDTLATSKAFEPYL-------------PNHKLDTVSEALNINLWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CAGIL 158


>gi|319948216|ref|ZP_08022374.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
 gi|319438119|gb|EFV93081.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4]
          Length = 240

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 57/204 (27%), Gaps = 17/204 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFIT 61
            +  D ET G D   DR      V VD     +    S  +     + D     ++  + 
Sbjct: 45  LLAVDVETTGLDPRRDRVVSVGFVPVDGDRIVLRGAGSMVLRSDGRSGDDGGVGQSATVH 104

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T       G   AE   R+    +     ++  +    +  +   +  R +       
Sbjct: 105 GLTDDDVA-HGSGVAEVLDRVLTALT---GRVLLAHYSTIEVDFLGVLCRRVY------- 153

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS-FKLQDLALANGIEHVNAHDAKAD 180
                   + +D +         GI      D +    +L       G+    AHDA  D
Sbjct: 154 --GVRPPLEAVDTLELQRRILGGGIGMGFTADPSPDELRLWGARGRYGLPRYRAHDAAVD 211

Query: 181 VYATLALVWLIREKKPKLFEYLYD 204
             A   L      +       +  
Sbjct: 212 ALACAELYLAQVAELRDRGARVLR 235


>gi|170769422|ref|ZP_02903875.1| exodeoxyribonuclease X [Escherichia albertii TW07627]
 gi|170121746|gb|EDS90677.1| exodeoxyribonuclease X [Escherichia albertii TW07627]
          Length = 220

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-VDGKIV-NPMSHLVRP--DRPITPQAMAIHRITES 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLLTT--FTFGKYRGKAVSEVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|78776758|ref|YP_393073.1| exonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78497298|gb|ABB43838.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 234

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 56/205 (27%), Gaps = 23/205 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D ET G +   D+      + V        +    +    +      +A  I  IT
Sbjct: 2   LIFLDVETTGLE-NGDKICSIGIICVSET-----AIFSKYELVNEGKKISSKASSINHIT 55

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        +   +  I    +  ++ II +N         ++ F              
Sbjct: 56  NEMIKDKPKFKDSKTWEILHENNNQSSTIIAHNVNFDLKMLLQSGFLWQGK--------- 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182
                 ++D +R      P+  ++  +         +D             AH+A +D  
Sbjct: 107 ------VVDTLRVTKHLIPECEEFSLQFLRYELKLYKDEKKEAAKYSAEISAHNALSDAL 160

Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207
               L   + E K          +N
Sbjct: 161 HVKLLYEYLLEIKEHDELVALSLKN 185


>gi|328464770|gb|EGF36087.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus MTCC
           5462]
          Length = 140

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 38/142 (26%), Gaps = 9/142 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D+ET   +         A V V +    ++S              DP+ + I GIT
Sbjct: 3   FIAMDFET--ANRKRASACSLALVVVQQN-RVVDSFYTL---INPQMQFDPQNIRIHGIT 56

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P                I  F       I+  +N  FD    R    R    +  +   +
Sbjct: 57  PDMVQNQP-TFDRVWPHIQMF--YTPGRIVTAHNAPFDVSVLRLTLDRYGIAAPSYQVID 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGI 146
                     +    +      
Sbjct: 114 TVKHHGSFTKVTESSSGYSQCC 135


>gi|301301275|ref|ZP_07207430.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851151|gb|EFK78880.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 177

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 56/190 (29%), Gaps = 28/190 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +         A   V +  +  +           D       + + GI
Sbjct: 2   NFVAIDFET--ANPKRYSACSLALTVV-KNNQIADQFYSL---IKPDTDFSWRNIQVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++         E    I  FF+  N  +I  +N  FD                   +D
Sbjct: 56  TEKQVQNAP-SFPELWPHIQNFFTPNN--LIVAHNASFDSSVLLRT---------LEHYD 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + LLD +R    F  D              KL  +     I+  + H+A  D  A
Sbjct: 104 ITLPHYQLLDTLRTSKKFFKDLEN----------HKLDTICNNLNIDLKHHHNALFDSTA 153

Query: 184 TLALVWLIRE 193
              ++     
Sbjct: 154 CAEILLYQAN 163


>gi|296392793|ref|YP_003657677.1| exonuclease RNase T and DNA polymerase III [Segniliparus rotundus
           DSM 44985]
 gi|296179940|gb|ADG96846.1| Exonuclease RNase T and DNA polymerase III [Segniliparus rotundus
           DSM 44985]
          Length = 202

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 12/155 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +  +  D E  G     D+  + A +  D +   I+          +D L   +     
Sbjct: 5   KDRLLWVDCEMTGLRPGFDQLIEIAALVTDGELNIIDDGIDLVIHAEEDKLAQMDEYVTN 64

Query: 62  -----GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                G+T +      +  AE        + + F  P T I+  N+I  D  +       
Sbjct: 65  MHASSGLT-EAVRASELSLAEAEERVLAYVKERFPAPRTAILAGNSIATDRSFLAKDMPE 123

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
              D++        S    L        +     +
Sbjct: 124 --LDAWLHYRMVDVSTIKELSRRWYPRIYFNQPEK 156


>gi|319744611|gb|EFV96961.1| DNA polymerase III [Streptococcus agalactiae ATCC 13813]
          Length = 821

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 75/241 (31%), Gaps = 39/241 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 8   KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 57

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++ ++      + +  I+Q       CI   +N++FD        +   ++  
Sbjct: 58  HLTGITDKQLVKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGFE-- 111

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    R D +++ +  Y                  + L  LA +  IE  +AH A 
Sbjct: 112 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           AD  AT  L   ++ K   L + + +         L +   +    +    F   +    
Sbjct: 154 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 213

Query: 239 L 239
            
Sbjct: 214 W 214


>gi|253800757|ref|YP_003033758.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 1435]
 gi|289555976|ref|ZP_06445186.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 605]
 gi|297636389|ref|ZP_06954169.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
           4207]
 gi|297733383|ref|ZP_06962501.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
           R506]
 gi|313660714|ref|ZP_07817594.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
           V2475]
 gi|253322260|gb|ACT26863.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 1435]
 gi|289440608|gb|EFD23101.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 605]
 gi|328460485|gb|AEB05908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           KZN 4207]
          Length = 329

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 18  VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD  +          +         +
Sbjct: 73  MLDGQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R +     +              +L+ LA    +     HDA  DV     
Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWRVPQQRPHDAFDDVRVLTG 169

Query: 187 LV 188
           ++
Sbjct: 170 IL 171


>gi|168180335|ref|ZP_02614999.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           NCTC 2916]
 gi|226949002|ref|YP_002804093.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum
           A2 str. Kyoto]
 gi|182668792|gb|EDT80770.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           NCTC 2916]
 gi|226843902|gb|ACO86568.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A2 str. Kyoto]
          Length = 195

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 53/197 (26%), Gaps = 10/197 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    +  D ET G +       Q      D  +   E          D    +  A  I
Sbjct: 1   MKK--IFIDTETTGLEP--GEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAI 56

Query: 61  TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            G + +K      G    + +  I       +   I +N      + +      N  +  
Sbjct: 57  HGFSVEKLKILSKGKKFKDLASEISSDLK--DGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114

Query: 119 RWSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +      +  +     R      P   +     D      L+        + V  HD
Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLDIDKKIVLKGAKKLFNCDDVGFHD 174

Query: 177 AKADVYATLALVWLIRE 193
           A+ DV A ++  +  + 
Sbjct: 175 ARYDVAALVSCYYRAKR 191


>gi|317493562|ref|ZP_07951983.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918505|gb|EFV39843.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 181

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 9/125 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFIT 61
           + +  D E  G +  +DR  + A +  D     +    V     +D+   L D   V   
Sbjct: 7   NLIWIDLEMTGLNPEVDRIIEIATLVTDANLNILAEGPVIAVHQSDEQLALMDEWNVRTH 66

Query: 62  ---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
              G+  ++       EA  +++  +F           I  N++  D  +          
Sbjct: 67  TGSGL-VERVKASTFDEATAAQKTIEFLQQWVPAGVSPICGNSVGQDRRFLFRYMPELEQ 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|21957334|gb|AAM84211.1|AE013664_6 hypothetical protein y0623 [Yersinia pestis KIM 10]
 gi|45435231|gb|AAS60791.1| Oligoribonuclease (3'->5' exoribonuclease) [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 230

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V     + +   L D   V 
Sbjct: 54  QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVR 113

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++       + +   +  +F           I  N++  D  +        
Sbjct: 114 THTGSGL-VERVKASPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 172

Query: 114 FYDSYRW 120
               +  
Sbjct: 173 EAYFHYR 179


>gi|145634678|ref|ZP_01790387.1| ribonuclease T [Haemophilus influenzae PittAA]
 gi|145268223|gb|EDK08218.1| ribonuclease T [Haemophilus influenzae PittAA]
 gi|309972517|gb|ADO95718.1| Ribonuclease T [Haemophilus influenzae R2846]
          Length = 229

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  +P +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q        +     II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +M                           LA     +   AH 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKAC-----------------LAAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAKLFCYMVNH 203


>gi|303240250|ref|ZP_07326769.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
 gi|302592160|gb|EFL61889.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
          Length = 211

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 62/209 (29%), Gaps = 25/209 (11%)

Query: 4   HFVIYDYETFGR---DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +++IYD E   +       +   +   +++D   ++I++ + F  KP       P     
Sbjct: 2   NYIIYDLELNSKPFKSKLPNEIIEIGAIKLDSDLKEIDTFQAFI-KPHYFKKLFPVVKRK 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT +          E      ++    +  I   ++       +            + 
Sbjct: 61  TKITQEDVNNA-ESFKEIISSFRKWIGDNSILISWGHDDVHHLLVNCKN--------NKI 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKA 179
           +        DL   + +IY                  + L++      I+   + H A A
Sbjct: 112 TTSWLKKNIDLQKQVSSIY-----------EVPAGQRYSLENAINVLEIDVGESFHRALA 160

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK 208
           D   T  +     ++         + + K
Sbjct: 161 DARYTAQIFSKTFDRLDLSVFNSLEVKKK 189


>gi|77408519|ref|ZP_00785256.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae COH1]
 gi|77172876|gb|EAO76008.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae COH1]
          Length = 835

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 75/241 (31%), Gaps = 39/241 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++ ++      + +  I+Q       CI   +N++FD        +   ++  
Sbjct: 72  HLTGITDKQLVKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEQLFLEGFE-- 125

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    R D +++ +  Y                  + L  LA +  IE  +AH A 
Sbjct: 126 -----LRTPRIDTVELSQVFYPCLE-------------KYSLGALAESLNIELTDAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           AD  AT  L   ++ K   L + + +         L +   +    +    F   +    
Sbjct: 168 ADARATAQLFIKLKAKISSLPKEVLETILTFADNLLFESYLLIEEAYQEADFVNPKEYYF 227

Query: 239 L 239
            
Sbjct: 228 W 228


>gi|218708317|ref|YP_002415938.1| oligoribonuclease [Vibrio splendidus LGP32]
 gi|218321336|emb|CAV17286.1| Oligoribonuclease [Vibrio splendidus LGP32]
          Length = 181

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
            + +  D E  G D    +  + A +  D +   +     +   +P  +     E    T
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQPQSELDKMDEWCTTT 65

Query: 62  GITPQKAL---RDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
                         V E +  ++  +F           I  N+I  D  +          
Sbjct: 66  HTGSGLVKRIQDSTVSEQDAIQQTIEFLEKWVPKGKSPICGNSIGQDRRFLYKHMPELEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|315604595|ref|ZP_07879658.1| oligoribonuclease [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313607|gb|EFU61661.1| oligoribonuclease [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 213

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 24/126 (19%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + +  +  D E  G DVA D   + A V  D     ++        P  D L  P A  +
Sbjct: 7   LKDPLIWIDCEMTGLDVANDALIEVAVVVTDGDLSIVD--------PGMDVLITPPACAL 58

Query: 61  TGITP------------QKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDY 104
             +               +  R GV   E + +    I +F   P   ++  N++  D  
Sbjct: 59  ENMNDFVRNMHTSSGLLTELARSGVSMEEATEQVLSYIKRFVPQPGKALLAGNSVGTDKM 118

Query: 105 YSRNIF 110
           +     
Sbjct: 119 FLEANM 124


>gi|307069564|ref|YP_003878041.1| putative DNA polymerase III subunit epsilon [Candidatus Zinderia
           insecticola CARI]
 gi|306482824|gb|ADM89695.1| putative DNA polymerase III, epsilon subunit [Candidatus Zinderia
           insecticola CARI]
          Length = 222

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 27/202 (13%)

Query: 2   TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
               +I D ET G +V   DR  + A +++     +  + + F      +   + +A+ I
Sbjct: 1   MKKEIILDIETTGLNVKKGDRIIEIACIKI---LNRKITNKKFHEYINPNRKSNKDALKI 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+ +          +   ++  F       I   +N  FD  +    F    Y  +++
Sbjct: 58  HGISDKFLKNKP-FFKDIIDKLINFIKNYTIII---HNSSFDISFLNKEFKILKYKKFKY 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
              N                   D ++   +        L  L     I       H+A 
Sbjct: 114 YVKN-----------------IVDSLKIARKKFPNKKNDLNSLCKRFKISIKKRKLHNAL 156

Query: 179 ADVYATLALVWLIREKKPKLFE 200
            D      +  ++  K+  +F 
Sbjct: 157 LDCILLSKIYLILIRKQKNIFY 178


>gi|300824605|ref|ZP_07104714.1| exonuclease [Escherichia coli MS 119-7]
 gi|300522930|gb|EFK43999.1| exonuclease [Escherichia coli MS 119-7]
          Length = 282

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 50/191 (26%), Gaps = 26/191 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
              D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 FFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
            + +  +++    Y             +   +  L   A   G      AH A AD    
Sbjct: 210 MTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGLAHSAIADARMA 259

Query: 185 LALVWLIREKK 195
             +V  I    
Sbjct: 260 AGVVNAIAAYH 270


>gi|183985996|gb|AAI66309.1| LOC100158598 protein [Xenopus (Silurana) tropicalis]
          Length = 273

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D   + A +  D   + +        K  D+ L        
Sbjct: 71  MGQRMVWVDLEMTGLDIEKDHIIEMACLITDSDLDILAEGPNLIIKQPDELLDGMSDWCK 130

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   Q      +   +       F      P  C +  N++  D  +      + 
Sbjct: 131 EHHGKSGLTQAVRESKITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKYMPQF 190

Query: 114 FYDSYRW 120
               +  
Sbjct: 191 MRHLHYR 197


>gi|168238504|ref|ZP_02663562.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735808|ref|YP_002114913.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930999|ref|ZP_03221825.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194711310|gb|ACF90531.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288686|gb|EDY28061.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204320043|gb|EDZ05248.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322616877|gb|EFY13785.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618116|gb|EFY15008.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625787|gb|EFY22606.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626239|gb|EFY23049.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632652|gb|EFY29397.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638997|gb|EFY35690.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640437|gb|EFY37090.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644201|gb|EFY40746.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649525|gb|EFY45957.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655432|gb|EFY51740.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660811|gb|EFY57042.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662892|gb|EFY59099.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668077|gb|EFY64236.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674164|gb|EFY70258.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675483|gb|EFY71557.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683103|gb|EFY79119.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686797|gb|EFY82775.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195312|gb|EFZ80492.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199204|gb|EFZ84299.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202983|gb|EFZ88016.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207461|gb|EFZ92409.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213958|gb|EFZ98726.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217444|gb|EGA02163.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219962|gb|EGA04435.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323231467|gb|EGA15580.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235907|gb|EGA19986.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240478|gb|EGA24521.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245369|gb|EGA29369.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246734|gb|EGA30706.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253590|gb|EGA37418.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255358|gb|EGA39128.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260250|gb|EGA43871.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266842|gb|EGA50328.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269048|gb|EGA52504.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 232

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +            +   + +N            F R         W    
Sbjct: 57  MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
              LI   +   +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     +    +   L  
Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215


>gi|24374295|ref|NP_718338.1| ribonuclease T [Shewanella oneidensis MR-1]
 gi|54036332|sp|Q8EDJ2|RNT_SHEON RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|24348836|gb|AAN55782.1|AE015715_1 ribonuclease T [Shewanella oneidensis MR-1]
          Length = 222

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 64/200 (32%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +   D     I+ T  F  +P +    +PEA+   G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFHIEPFEGANLEPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +    I +        S  +  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEKDAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
               S  +  + +D   +       +                 L    +  GI   N  A
Sbjct: 140 ---RSPFHPFATFDTATLAGLAIGHTV----------------LAKACIMAGIPFDNKEA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  +
Sbjct: 181 HSALYDTERTAELFCYIVNR 200


>gi|319787041|ref|YP_004146516.1| exonuclease RNase T and DNA polymerase III [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465553|gb|ADV27285.1| Exonuclease RNase T and DNA polymerase III [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 189

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 13/129 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV--- 58
            +  +  D E  G D   D   + A V  D Q   +              L   EA+   
Sbjct: 7   MDRLIWIDLEMTGLDTDRDSILEIATVVTDAQLNVLAEGPELAISHPLQVL---EAMDDW 63

Query: 59  --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
                G +   Q+ L   V  A+   R   F +         +  N+I  D  +   +  
Sbjct: 64  NRNQHGRSGLWQRVLDSDVTLAQAEARTVAFLNEWVPAKASPMCGNSICQDRRFLHRLMP 123

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 124 RLEQYFHYR 132


>gi|254457641|ref|ZP_05071069.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207086433|gb|EDZ63717.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 231

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 59/203 (29%), Gaps = 26/203 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D ET G +  +DR      V  +            +    +       A  I  IT
Sbjct: 2   LIFLDVETTGLE-EIDRVCSIGIVWSED-----GENRTIYELVNEGKKIPSLASSINHIT 55

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +        +   + ++    +  +T I+G+N         +                 
Sbjct: 56  NEMLKGKPKFQESEAYKLLTQHNNEDTTIVGHNIKFDLAMLKK---------------SG 100

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            N   +++D +R       +  Q+  +       + +        E + AH A +D    
Sbjct: 101 FNFIGEIIDTLRVTKHLVSECEQFSLQF-----LRYELKLYKEEKELLQAHHALSDATIA 155

Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
             L   + E +PK       + N
Sbjct: 156 KNLYEYLLEIQPKEKLAKLSFEN 178


>gi|187777769|ref|ZP_02994242.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC
           15579]
 gi|187774697|gb|EDU38499.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC
           15579]
          Length = 286

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 61/233 (26%), Gaps = 34/233 (14%)

Query: 4   HFVIYDYETFGRD----------------VALDRPAQFAGVRVDRQWEKIESTEVFFCKP 47
           +++I+D E                        D   +   ++++ + E ++S  V + KP
Sbjct: 2   NYIIFDLEWNSFRNVKNHINYYKKFNKKTRFFDEIIEIGAMKLNDELECVDSFRV-YIKP 60

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
                 +P  + +TGI  +          +F + +  F        I  +    D    +
Sbjct: 61  TIYKELNPRIIELTGINNEDLKYG----FDFKKALKHFKEWIGKDYILCSWCDSDIKVLK 116

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
                   +    S+                Y          S ++   S          
Sbjct: 117 KNIEYYNPNYKVESFLVPYIDIQKYCCEILEYGRRVSLHDIISTENIVPS---------- 166

Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
                  H A  D   T+ +   +  K       + D  +      L    +M
Sbjct: 167 ---TDTFHQALDDSKLTVDVFRKMFHKCKIENYIINDLDSFYDSLDLKVSFDM 216


>gi|55823505|ref|YP_141946.1| DNA polymerase III subunit epsilon [Streptococcus thermophilus
           CNRZ1066]
 gi|55739490|gb|AAV63131.1| DNA polymerase III epsilon subunit [Streptococcus thermophilus
           CNRZ1066]
          Length = 196

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 28/195 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ +D E F     +    Q + V++ +  ++++  + F      +         +TG
Sbjct: 5   ETYIAFDLE-FNTVDGVSHIIQVSAVKMGQH-KEVDQYDSF---VYSNVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  K  +   +E+        F    NT +IGYN ++ D          N  + Y    
Sbjct: 60  ITADKIAKAPKLES-VLAEFKAFI--GNTPLIGYNALKSDLPI-LAENGLNLEEQYA--- 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D+ D      A   +GI          + KL  +A   GI+  + H++  D  
Sbjct: 113 ------LDVFDEAFDRRASDLNGI---------VNLKLTSVADFFGIK-GHGHNSLEDAR 156

Query: 183 ATLALVWLIREKKPK 197
            T  +     E    
Sbjct: 157 MTAQIYKKFLELDEN 171


>gi|159036666|ref|YP_001535919.1| oligoribonuclease [Salinispora arenicola CNS-205]
 gi|157915501|gb|ABV96928.1| Exonuclease RNase T and DNA polymerase III [Salinispora arenicola
           CNS-205]
          Length = 196

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 48/157 (30%), Gaps = 14/157 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD---DYLPDPEA 57
           M +  V  D E  G D+  D+  + A +  D     +           +   D +P+  A
Sbjct: 1   MADLLVWIDCEMTGLDLGSDKLIEVAALVTDPDLNVLGEGVDVVIHADEAALDKMPEIVA 60

Query: 58  VFIT---GITPQKALRDGVVEAEFSRRIHQF----FSVPNTCIIGYNNIRFDDYYSRNIF 110
                  G+T ++  R  V  AE    I  +       P T  +  N+I  D  +     
Sbjct: 61  TM-HAKSGLT-EEVRRSTVGLAEAEDLILDYVTSHVKDPRTAPLCGNSIATDRGFIARDM 118

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
            R   D++        S    L        +     +
Sbjct: 119 PR--LDNHLHYRMIDVSSIKELCRRWYPRVYFSQPQK 153


>gi|145631430|ref|ZP_01787200.1| ribonuclease T [Haemophilus influenzae R3021]
 gi|145632574|ref|ZP_01788308.1| ribonuclease T [Haemophilus influenzae 3655]
 gi|145640270|ref|ZP_01795854.1| ribonuclease T [Haemophilus influenzae R3021]
 gi|144982967|gb|EDJ90476.1| ribonuclease T [Haemophilus influenzae R3021]
 gi|144986769|gb|EDJ93321.1| ribonuclease T [Haemophilus influenzae 3655]
 gi|145274856|gb|EDK14718.1| ribonuclease T [Haemophilus influenzae 22.4-21]
          Length = 229

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  +P +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q        +     II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +M                           LA     +   AH 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKAC-----------------LAAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAKLFCYMVNH 203


>gi|145600855|ref|YP_001164931.1| oligoribonuclease [Yersinia pestis Pestoides F]
 gi|108777113|gb|ABG19632.1| oligoribonuclease [Yersinia pestis Nepal516]
 gi|108781821|gb|ABG15879.1| oligoribonuclease [Yersinia pestis Antiqua]
 gi|145212551|gb|ABP41958.1| oligoribonuclease [Yersinia pestis Pestoides F]
          Length = 227

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V     + +   L D   V 
Sbjct: 51  QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVR 110

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++       + +   +  +F           I  N++  D  +        
Sbjct: 111 THTGSGL-VERVKASPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 169

Query: 114 FYDSYRW 120
               +  
Sbjct: 170 EAYFHYR 176


>gi|325579056|ref|ZP_08149012.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392]
 gi|325159291|gb|EGC71425.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392]
          Length = 229

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 53/198 (26%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  +P +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDGNGNLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q              II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L   M                            A     +   AH 
Sbjct: 143 RNPFHPFGMFDTATLAGFMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAELFCYMVNH 203


>gi|291619097|ref|YP_003521839.1| Orn [Pantoea ananatis LMG 20103]
 gi|291154127|gb|ADD78711.1| Orn [Pantoea ananatis LMG 20103]
 gi|327395429|dbj|BAK12851.1| oligoribonuclease Orn [Pantoea ananatis AJ13355]
          Length = 194

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 19 NNLIWIDLEMTGLDPERDRIIEIATIVTDADLNILAE 55


>gi|119472859|ref|ZP_01614766.1| ribonuclease T [Alteromonadales bacterium TW-7]
 gi|119444691|gb|EAW25998.1| ribonuclease T [Alteromonadales bacterium TW-7]
          Length = 227

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 66/200 (33%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D      I+ T  F  +P +    +  A+   G
Sbjct: 19  VVIDVETAGFNKETDALLEIAVSVLKMDDDGLLSIDQTVHFHVEPFEGANIEQAAIEFNG 78

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E  + I +              +I  +N  FD  +      RN   
Sbjct: 79  IDPFSPLRGAVAEEEAIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERN--- 135

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
           + + +  +    +D   +                         L     A GIE  N  A
Sbjct: 136 NIKRTPFHPFVSFDTTTLA----------------GLALGQTVLAKACRAAGIEFDNSQA 179

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L  LI  +
Sbjct: 180 HSALYDTERTAELYCLIVNR 199


>gi|331663335|ref|ZP_08364245.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA143]
 gi|331059134|gb|EGI31111.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA143]
          Length = 220

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 62/264 (23%), Gaps = 52/264 (19%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246
              LI       +             + +      P +  +  FG  R            
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTTFTFGKYRGKAISDVAE-RD 191

Query: 247 PRYKDSVIGCNLSGDMRVFQDLDS 270
           P Y   +     S    +   L  
Sbjct: 192 PGYLRWLFNNLDSMSPELRLTLKH 215


>gi|171913521|ref|ZP_02928991.1| hypothetical protein VspiD_20115 [Verrucomicrobium spinosum DSM
           4136]
          Length = 202

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 9/125 (7%)

Query: 1   MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M++    ++ D ET G D       +   V +    E      V  C+P  D + +  A+
Sbjct: 1   MSDEPRLLVTDLETTGLDGRACGIVEIGAVWMLGAGE-----FVMKCRPHADAVIEARAM 55

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            + G            E E   +  ++       I+   N R D ++ +    R+  +  
Sbjct: 56  EVNGCDW-HLDPTVAAEVEALEQFVEWVG-AGPVILCGQNPRHDLWFLQEGAKRHGLELP 113

Query: 119 RWSWD 123
                
Sbjct: 114 FVHRT 118


>gi|260202912|ref|ZP_05770403.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis K85]
 gi|289572362|ref|ZP_06452589.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           K85]
 gi|289536793|gb|EFD41371.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
           K85]
          Length = 329

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 28/182 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G      R    A + +D      +S             P P    + G+T  
Sbjct: 18  VIDVETLGFRPGQARIISLAVLGLDAAGRLEQSVVSL---LNPKVDPGP--THVHGLTAA 72

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    A+ +  +           +  +N+ FD  +          +         +
Sbjct: 73  MLDDQPQ-FADIAGEVVDVLR---GRTLVAHNVAFDYAFLAAEAEIAEAELPV------D 122

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +++ R +     +              +L+ LA   G+     HDA  D      
Sbjct: 123 FVMCTVELARRLQLGVDNL-------------RLETLAAHWGVPQQRPHDAFDDARVLTG 169

Query: 187 LV 188
           ++
Sbjct: 170 IL 171


>gi|94502355|ref|ZP_01308822.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|94451087|gb|EAT14045.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
          Length = 511

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 28/199 (14%)

Query: 5   FVIYDYETFGRDVALD------------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           ++I+D ET G  +  D            R  + + V +D + + I   + +  KP    +
Sbjct: 2   YIIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLI-ELKDYIIKPEGYEI 60

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           P   +  I GI+ + A+  G+         +      N   +  +N+ FD       F R
Sbjct: 61  PF-NSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSN--FLIGHNVFFDIKIVCAEFIR 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                  +     +++   ++          +  +WP+         L +L      +  
Sbjct: 118 INKKISFFKKKIIDTKEISIN---YCAIKMGEKFKWPT---------LTELYKKLFNDTF 165

Query: 173 NAHDAKADVYATLALVWLI 191
            AHD+K+DV AT    + +
Sbjct: 166 IAHDSKSDVLATTKCFFEL 184


>gi|222149115|ref|YP_002550072.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease
           [Agrobacterium vitis S4]
 gi|221736100|gb|ACM37063.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease
           [Agrobacterium vitis S4]
          Length = 207

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 49/194 (25%), Gaps = 29/194 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    +  D+ET   +             V    + +   E    +P          + I
Sbjct: 5   LQPKIIAIDFET--ANEERGSACSVGLAFV-ENGQVV-RVEERLIRPKTMR-FSSFNIAI 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI P      G    E        FS     ++  +N  FD    R             
Sbjct: 60  HGIRPDHVEDAGE-FPEVMDEFADDFS---GAMVVAHNAAFDLSVWRASCDLYRQPYPSL 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           S+               + +       WP       S +L  LA    +     H+A  D
Sbjct: 116 SY---------------VCSVKLAQKVWP----QLPSHRLNVLAAHLQLSF-RHHNAAED 155

Query: 181 VYATLALVWLIREK 194
                  V  + E+
Sbjct: 156 ASVCAQAVIAMMER 169


>gi|70732988|ref|YP_262761.1| exonuclease [Pseudomonas fluorescens Pf-5]
 gi|68347287|gb|AAY94893.1| exonuclease [Pseudomonas fluorescens Pf-5]
          Length = 235

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 6/154 (3%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  D+      V +        S +         +   P +V I G+ P
Sbjct: 42  VVVDVETTGLNLNRDQVLSIGAVVI-EDGAIDFSQQFERTLQRQGHKLSP-SVLIHGLGP 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A+  G    E    +  F        +   +  FD +        +     + S+ + 
Sbjct: 100 S-AIAAGCDPVEA---LLDFMEFVGDSPLLAFHAPFDQHMLGRALKDSLGYRLQHSFLDV 155

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                LL     I     D               
Sbjct: 156 ADMAPLLCPQAQIREAGLDDWVRWFNLQVVERHN 189


>gi|262393711|ref|YP_003285565.1| ribonuclease T [Vibrio sp. Ex25]
 gi|262337305|gb|ACY51100.1| ribonuclease T [Vibrio sp. Ex25]
          Length = 214

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 61/201 (30%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D        ST  F  +P +    + EA+   G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLKMDEDGVLHPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E E  + I++        +  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPYSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLGFVNAANERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAYGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 181 AHSALYDTQKTAELFCGIVNK 201


>gi|261254064|ref|ZP_05946637.1| oligoribonuclease [Vibrio orientalis CIP 102891]
 gi|260937455|gb|EEX93444.1| oligoribonuclease [Vibrio orientalis CIP 102891]
          Length = 181

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
            + +  D E  G D    +  + A +  D +   +     +   +P  +     E    T
Sbjct: 6   QNLIWIDLEMTGLDPETHKVIEIATIVTDSELNILAEGPVLAIHQPDAELKKMDEWCTTT 65

Query: 62  GI---TPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
                   +  +  + E E  R+  +F           I  N++  D  +          
Sbjct: 66  HTGSGLVDRVRKSNIDEQEAVRQTIEFLEKWVPKGKSPICGNSVGQDRRFLYKHMAELEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|71066107|ref|YP_264834.1| oligoribonuclease [Psychrobacter arcticus 273-4]
 gi|71039092|gb|AAZ19400.1| putative oligoribonuclease protein [Psychrobacter arcticus 273-4]
          Length = 195

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 35/126 (27%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
               V  D E  G D   D   + A V  D     +    VF  K +D  L   D     
Sbjct: 17  KKGLVWIDLEMTGLDTLNDEIIEIATVVTDEDLNVLAEGPVFAIKVSDRKLNGMDDWNTK 76

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +  R  V  AE      +F +         +  N+I  D  +         
Sbjct: 77  QHGQSGLVDRVRRSTVTLAEAEAETLKFLNKWVDSGKSPMCGNSICQDRRFMARQMPELE 136

Query: 115 YDSYRW 120
              +  
Sbjct: 137 KFFHYR 142


>gi|325917515|ref|ZP_08179720.1| RNAse T [Xanthomonas vesicatoria ATCC 35937]
 gi|325536273|gb|EGD08064.1| RNAse T [Xanthomonas vesicatoria ATCC 35937]
          Length = 213

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 58/211 (27%), Gaps = 39/211 (18%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWE-KIESTEVFFCKPADDYL 52
           M+  F     V+ D ET G D       + A V +  D         T      PA    
Sbjct: 18  MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMDADGRFFPGETASAHLVPAPGLE 77

Query: 53  PDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRFD 102
            DP+++ ITGI     L      A+            +            I+  +N  FD
Sbjct: 78  IDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFD 133

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
             +      R  +    +      S +D + +    Y              G T      
Sbjct: 134 LNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARAA 176

Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIRE 193
            A        +AH A  D   T  L   I  
Sbjct: 177 QAAGLDWNAADAHSAVYDTEQTARLFCTIAN 207


>gi|330838686|ref|YP_004413266.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
           ATCC 35185]
 gi|329746450|gb|AEB99806.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
           ATCC 35185]
          Length = 186

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 32/195 (16%)

Query: 1   MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M  +++  D+ET  G   +++     A V V R  +  E               D   + 
Sbjct: 1   MM-NYIAIDFETATG---SMNSACSVATVEV-RDGQLKEGWTTLI--QPPGLRFDSFNIG 53

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GI+P+         AE    + +  +     I+  +N  FD    +     N      
Sbjct: 54  IHGISPKDVTDAP-TFAEVWEELKERLA---GKIVVAHNASFDMGVLKASLLAN------ 103

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                    +     +R           WP+ DD     KL  +     I     H A  
Sbjct: 104 ---RLQAPYFRTCCTVRIARKV------WPALDD----HKLNTVGAHLNINF-RHHRALD 149

Query: 180 DVYATLALVWLIREK 194
           D     A++     +
Sbjct: 150 DARTCAAILLFAGME 164


>gi|260887789|ref|ZP_05899052.1| exonuclease [Selenomonas sputigena ATCC 35185]
 gi|260862465|gb|EEX76965.1| exonuclease [Selenomonas sputigena ATCC 35185]
          Length = 202

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 32/195 (16%)

Query: 1   MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M  +++  D+ET  G   +++     A V V R  +  E               D   + 
Sbjct: 17  MM-NYIAIDFETATG---SMNSACSVATVEV-RDGQLKEGWTTLI--QPPGLRFDSFNIG 69

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I GI+P+         AE    + +  +     I+  +N  FD    +     N      
Sbjct: 70  IHGISPKDVTDAP-TFAEVWEELKERLA---GKIVVAHNASFDMGVLKASLLAN------ 119

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                    +     +R           WP+ DD     KL  +     I     H A  
Sbjct: 120 ---RLQAPYFRTCCTVRIARKV------WPALDD----HKLNTVGAHLNINF-RHHRALD 165

Query: 180 DVYATLALVWLIREK 194
           D     A++     +
Sbjct: 166 DARTCAAILLFAGME 180


>gi|257468536|ref|ZP_05632630.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062795|ref|ZP_07927280.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
 gi|313688471|gb|EFS25306.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
          Length = 190

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 23/197 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +  D ET G +       Q +G+ V    + +E    FF KP  +   + +A+ + G 
Sbjct: 2   KILFIDTETGGLNPKESALIQLSGI-VRIDKKDVEEFN-FFIKPFAESEVNAKALEVQGR 59

Query: 64  TPQKALRDGV-VEAEFSRRIHQFFSV--------PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           T ++   +    E E      +                + GYN     D           
Sbjct: 60  TEKELETEKYRPEKEVYTDFKKILDRYIDKYDKTDKFIVAGYNVKFDIDMLQSFFKRNGD 119

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
              + +   +       + +++                    + KL+      GI    A
Sbjct: 120 NFLFSYISSSVLDPLPCIGMLQLCEVL-----------PELKNNKLETWCEYFGIGF-KA 167

Query: 175 HDAKADVYATLALVWLI 191
           HD+  D+ AT  L++ I
Sbjct: 168 HDSLEDIKATKELIFKI 184


>gi|237785970|ref|YP_002906675.1| oligoribonuclease [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758882|gb|ACR18132.1| putative oligoribonuclease [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 222

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 8/127 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D +     + A +  D     ++          DD L   D     +
Sbjct: 23  DRIVWIDCEMTGLDPSTHVLVEIAAIVTDANLNILDEGLDIVIHATDDELAKMDDFVTQM 82

Query: 61  T---GITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+T +        G  E E    + ++ + P T  +  N+I  D  +      +  
Sbjct: 83  HTKNGLTDEIRKSTVSVGEAENEVLDYVKKWVNAPRTAPLAGNSIASDRKFIAAYMPKLD 142

Query: 115 YDSYRWS 121
              +   
Sbjct: 143 EFLHYRM 149


>gi|218190704|gb|EEC73131.1| hypothetical protein OsI_07145 [Oryza sativa Indica Group]
          Length = 247

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 41/201 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G DVA DR  + A +  D +           I   +       +       
Sbjct: 68  LVWIDLEMTGLDVAKDRILEIACIITDGKLTKQIEGPDLVINQKKDLLDNMDEWCKTHHA 127

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
           A  +T    Q+ L+  + E +   ++  F       +  +I  N++  D  + +      
Sbjct: 128 ASGLT----QRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAGNSVYVDLLFLK------ 177

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                            ++DV   +        +   R                      
Sbjct: 178 ----NYMPQLAAIFSHVIVDVSSIMALCIRWYPKERKRTPQK----------------GK 217

Query: 174 AHDAKADVYATLALVWLIREK 194
            H A  D+  ++A +   ++ 
Sbjct: 218 KHRAMNDIKESIAELKYYKDN 238


>gi|152985597|ref|YP_001350999.1| oligoribonuclease [Pseudomonas aeruginosa PA7]
 gi|166216274|sp|A6VD64|ORN_PSEA7 RecName: Full=Oligoribonuclease
 gi|150960755|gb|ABR82780.1| oligoribonuclease [Pseudomonas aeruginosa PA7]
          Length = 180

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D     +    V      ++ L   D     
Sbjct: 4   PQNLIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVIAIHQPEEVLAGMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +   F           I  N+I  D  +      R  
Sbjct: 64  QHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSSPICGNSICQDRRFLYRHMPRLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 GYFHYR 129


>gi|15600144|ref|NP_253638.1| oligoribonuclease [Pseudomonas aeruginosa PAO1]
 gi|107104050|ref|ZP_01367968.1| hypothetical protein PaerPA_01005123 [Pseudomonas aeruginosa PACS2]
 gi|116053100|ref|YP_793419.1| oligoribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894046|ref|YP_002442915.1| oligoribonuclease [Pseudomonas aeruginosa LESB58]
 gi|254238334|ref|ZP_04931657.1| oligoribonuclease [Pseudomonas aeruginosa C3719]
 gi|254244161|ref|ZP_04937483.1| oligoribonuclease [Pseudomonas aeruginosa 2192]
 gi|296391791|ref|ZP_06881266.1| oligoribonuclease [Pseudomonas aeruginosa PAb1]
 gi|313109953|ref|ZP_07795880.1| oligoribonuclease [Pseudomonas aeruginosa 39016]
 gi|11386963|sp|P57665|ORN_PSEAE RecName: Full=Oligoribonuclease
 gi|122256887|sp|Q02F67|ORN_PSEAB RecName: Full=Oligoribonuclease
 gi|9951232|gb|AAG08336.1|AE004908_2 oligoribonuclease [Pseudomonas aeruginosa PAO1]
 gi|115588321|gb|ABJ14336.1| oligoribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170265|gb|EAZ55776.1| oligoribonuclease [Pseudomonas aeruginosa C3719]
 gi|126197539|gb|EAZ61602.1| oligoribonuclease [Pseudomonas aeruginosa 2192]
 gi|218774274|emb|CAW30091.1| oligoribonuclease [Pseudomonas aeruginosa LESB58]
 gi|310882382|gb|EFQ40976.1| oligoribonuclease [Pseudomonas aeruginosa 39016]
          Length = 180

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D     +    V      ++ L   D     
Sbjct: 4   PQNLIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVIAIHQPEEILAGMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +   F           I  N+I  D  +      R  
Sbjct: 64  QHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSSPICGNSICQDRRFLYRHMPRLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 GYFHYR 129


>gi|326385272|ref|ZP_08206935.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196015|gb|EGD53226.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 236

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 34/210 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ------WEKIESTEVFFCKPADDYLP- 53
           MT+ +V  D ET G +     P +   V +            +      F     D +  
Sbjct: 1   MTHRYVALDLETTGLNTLTACPLEIGAVEILENDPRGPYGRVLG-----FVPHTPDAVLH 55

Query: 54  --DPEAVFITGITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
              P+A+ +     ++           A+    + +        ++G N           
Sbjct: 56  KASPDALAVNRFYERRLYAAMLRPAETADMMLELVELLR--GATLVGANVAYDAAILW-- 111

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
            +   F D     W   + R   +++   +              D   S +         
Sbjct: 112 AWLATFTDDETPPW---HFRLYDVELATEVAL----------NLDRTPSLRSSCELWNVD 158

Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKL 198
            +   AH A  D Y    +   +R      
Sbjct: 159 TDRDAAHTALGDAYMAADVFLAVRAHCRGD 188


>gi|89071984|ref|ZP_01158580.1| hypothetical protein SKA34_08118 [Photobacterium sp. SKA34]
 gi|89052085|gb|EAR57536.1| hypothetical protein SKA34_08118 [Photobacterium sp. SKA34]
          Length = 186

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 8/126 (6%)

Query: 3   NHFVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           +  V +D E      GR        +     +D    KI      + +PA D +  P   
Sbjct: 4   DRIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEI-SPFCT 62

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI P+   ++G   +   + I Q F   +     +     DD   +           
Sbjct: 63  ELTGIKPEVVEKNGKPLSVILKSIEQKFGGRHKIYAAW---GHDDRILKKECLAKELKVP 119

Query: 119 RWSWDN 124
              + N
Sbjct: 120 FREYLN 125


>gi|161613571|ref|YP_001587536.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|198244129|ref|YP_002215209.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|161362935|gb|ABX66703.1| hypothetical protein SPAB_01291 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197938645|gb|ACH75978.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622957|gb|EGE29302.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 232

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +            +   + +N            F R         W    
Sbjct: 57  MVADKPWIE-DVIP-----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHYHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
              LI   +   +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMRTTGW-----------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     +    +   L  
Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215


>gi|148380237|ref|YP_001254778.1| exonuclease family protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931193|ref|YP_001384542.1| exonuclease family protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153935233|ref|YP_001388058.1| exonuclease family protein [Clostridium botulinum A str. Hall]
 gi|148289721|emb|CAL83826.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
 gi|152927237|gb|ABS32737.1| exonuclease family protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931147|gb|ABS36646.1| exonuclease family protein [Clostridium botulinum A str. Hall]
          Length = 253

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 70/207 (33%), Gaps = 30/207 (14%)

Query: 4   HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
            ++I+D E    +   +            Q   ++++  +  I++      KP      +
Sbjct: 2   SYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNAL-VKPEIYSDLN 57

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P    +T +T     +      E  +   +F +        +      + +   ++Y+  
Sbjct: 58  PFVKNLTNLTMDSLNKA-KSFREVYKDFLEFLNKDRNIFCIWGMTDMKELFRNIVYYQLD 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +S    + N             + A++   + +P   +   S  ++   L +  ++ + 
Sbjct: 117 TESMPKEYIN-------------VQAYTGKYLNYPKSINVGLSNAVE---LFHITKNNDF 160

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H+A  D + T  +   I  +K K   Y
Sbjct: 161 HNAFNDAFYTAEVFKKIYSEKIKTKIY 187


>gi|115446061|ref|NP_001046810.1| Os02g0465500 [Oryza sativa Japonica Group]
 gi|47496882|dbj|BAD19846.1| putative oligoribonuclease [Oryza sativa Japonica Group]
 gi|47497504|dbj|BAD19557.1| putative oligoribonuclease [Oryza sativa Japonica Group]
 gi|113536341|dbj|BAF08724.1| Os02g0465500 [Oryza sativa Japonica Group]
 gi|215687346|dbj|BAG91911.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 247

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 55/201 (27%), Gaps = 41/201 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G DVA DR  + A +  D +           I   +       +       
Sbjct: 68  LVWIDLEMTGLDVAKDRILEIACIITDGKLTKQIEGPDLVINQKKDLLDNMDEWCKTHHA 127

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
           A  +T    Q+ L+  + E +   ++  F       +  +I  N++  D  + +      
Sbjct: 128 ASGLT----QRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAGNSVYVDLLFLK------ 177

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                            ++DV   +        +   R                      
Sbjct: 178 ----NYMPQLAAIFSHVIVDVSSIMALCIRWYPKERKRTPQK----------------GK 217

Query: 174 AHDAKADVYATLALVWLIREK 194
            H A  D+  ++A +    + 
Sbjct: 218 KHRAMNDIKESIAELKYYEDN 238


>gi|312278915|gb|ADQ63572.1| DNA polymerase III epsilon subunit [Streptococcus thermophilus
           ND03]
          Length = 196

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 28/195 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ +D E F     +    Q + V++ +  ++++  + F      +         +TG
Sbjct: 5   ETYIAFDLE-FNTVDGVSHIIQVSAVKMGQH-KEVDQFDSFVYS---NVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  K  +   +E+        F    NT +IGYN ++ D          N  + Y    
Sbjct: 60  ITADKIAKAPKLES-VLAEFKAFI--GNTPLIGYNALKSDLPI-LAENGLNLEEQYA--- 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D+ D      A   +GI          + KL  +A   GI+  + H++  D  
Sbjct: 113 ------LDVFDEAFDRRASDLNGI---------VNLKLTSVADFFGIK-GHGHNSLEDAR 156

Query: 183 ATLALVWLIREKKPK 197
            T  +     E    
Sbjct: 157 MTAQIYEKFLELDEN 171


>gi|291327132|ref|ZP_06127108.2| oligoribonuclease [Providencia rettgeri DSM 1131]
 gi|291311676|gb|EFE52129.1| oligoribonuclease [Providencia rettgeri DSM 1131]
          Length = 187

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 48/171 (28%), Gaps = 9/171 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N+ +  D E  G D   DR  + A +  D     +    V      D+ L   +   +  
Sbjct: 12  NNLIWIDLEMTGLDPVRDRIIEIATIVTDSHLNILAEGPVIAVHQTDEQLALMDEWNVNT 71

Query: 63  ITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            T     ++  +  V E E       F           I  N++  D  +  N  Y    
Sbjct: 72  HTNSGLVERVRKSTVSEREAELATIAFLEKWVPQGASPICGNSVGQDRRFLFN--YMPEL 129

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
           +SY        S    L         +    +   +        + +LA  
Sbjct: 130 ESYFHYRYLDVSTLKELARRWKPEILAGFTKKNTHQALDDIRESVAELAYY 180


>gi|315641337|ref|ZP_07896413.1| exonuclease [Enterococcus italicus DSM 15952]
 gi|315482910|gb|EFU73430.1| exonuclease [Enterococcus italicus DSM 15952]
          Length = 177

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +         A V V R  + +            +       + I GI
Sbjct: 2   NFIAMDFET--ANHQRHSACSLALVMV-RDSKIVGEYYSL---IQPETSFFWRNIQIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            PQ          E    I Q+F+ P + II +N    +   +  + Y N    +  +  
Sbjct: 56  KPQDVKTAPK-FPEVWESIAQYFN-PYSLIIAHNAPFDNGVLAGCLDYYNLEQPHYLT-- 111

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   LD +R    F  +            + +L  +     I  +N HDA  D  A
Sbjct: 112 --------LDTVRTSRKFYQNL----------PNHRLNTVCGYLDIPLLNHHDALEDSRA 153

Query: 184 TLALVWLIREK 194
              ++    ++
Sbjct: 154 CAEILLAQEKE 164


>gi|227113804|ref|ZP_03827460.1| oligoribonuclease [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
 gi|227326226|ref|ZP_03830250.1| oligoribonuclease [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 180

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 44/171 (25%), Gaps = 9/171 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G +   DR  + A +  D     +    V     +D    L D   V  
Sbjct: 5   NNLIWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAEGPVMAVHQSDSQLALMDDWNVRT 64

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       E         F           I  N+I  D  +     Y    
Sbjct: 65  HGASGLTDRVKASTTDERAAELETLAFLQKWVPAGKSPICGNSIGQDRRFLFR--YMPEL 122

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
           ++Y        S    L         +    Q   +        L +LA  
Sbjct: 123 EAYFHYRYLDVSTLKELARRWKPEILTGFKKQGTHQAMDDIRESLAELAYY 173


>gi|170717217|ref|YP_001784337.1| oligoribonuclease [Haemophilus somnus 2336]
 gi|168825346|gb|ACA30717.1| Exonuclease RNase T and DNA polymerase III [Haemophilus somnus
           2336]
          Length = 184

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 34/131 (25%), Gaps = 15/131 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +          +        +  + 
Sbjct: 5   KQNLIWIDLEMTGLDPDKERIIEIATIVTDKDLNILAEGPVLAIHQSNELLNNMNEWCVK 64

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
              +    G+  ++     + E     +   F           I  N++  D  +  N  
Sbjct: 65  THTS---NGL-IERVKNSKLTERAAELQTLDFLKKWVPKGVSPICGNSVAQDKRFLINYM 120

Query: 111 YRNFYDSYRWS 121
                  +   
Sbjct: 121 PELAEYFHYRH 131


>gi|332971471|gb|EGK10424.1| ribonuclease T [Psychrobacter sp. 1501(2011)]
          Length = 268

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 72/228 (31%), Gaps = 36/228 (15%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYL 52
           M + F     V+ D ET G D   D   + A   + +D Q + I          P +   
Sbjct: 54  MVDRFRKFLPVVVDVETAGFDAKTDALLELACIPIIMDEQGKFIPGEALNAHLNPFEGAN 113

Query: 53  PDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFS------VPNTCIIGYNNIRFDDY 104
            +  A+  TGI P   +R  + E E    RRI +             CI+  +N  FD  
Sbjct: 114 LEQRALDFTGIDPNNPMRKAIAEEEQPALRRIFKELKAVRKENDCLKCILVGHNAHFDLS 173

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
           +      R           N   ++ +LD +          +             L    
Sbjct: 174 FLNAAIERTN-----SKNHNPFHQFSVLDTVTLSALAFGQTV-------------LARAC 215

Query: 165 LANGIEH--VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            A GIE     AH A  D   T  L   I    P L   L +    N+
Sbjct: 216 KAAGIEFSGTEAHSALYDTQKTAELFCHILNSYPMLTNALLEDNTANE 263


>gi|156376678|ref|XP_001630486.1| predicted protein [Nematostella vectensis]
 gi|156217508|gb|EDO38423.1| predicted protein [Nematostella vectensis]
          Length = 201

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 56/197 (28%), Gaps = 25/197 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----------EKIESTEVFFCKPADDYL 52
            F+  D ET G         +   + V +               I+              
Sbjct: 1   TFIFLDLETTGLR-RPIEITEICLIAVQKDHLLRAAETKTEPRLIDK---LSICVKPVQN 56

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIF 110
            +  A  ITGI           + + ++ I  F       +C++ ++  RFD     + F
Sbjct: 57  IECGASSITGINKMDLAEKREFDRKLAKVIKTFLRRQPSPSCLVAHSGDRFDFDILASEF 116

Query: 111 YRNFYDSY-----RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
                          SW          ++  +    +      P    G  SF L +L  
Sbjct: 117 VNAGVKFPSEIQAADSWKAFRKLHQAEELKTSEAKRTTRTKLAPYT--GRLSFSLGNLYK 174

Query: 166 AN-GIEHVNAHDAKADV 181
              G E  N+H A+ D 
Sbjct: 175 RMTGSEIENSHTAEGDT 191


>gi|256832848|ref|YP_003161575.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM
           20603]
 gi|256686379|gb|ACV09272.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM
           20603]
          Length = 298

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 39/146 (26%), Gaps = 17/146 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              + + D ET G     DR  + A V  D         E            +  A  I 
Sbjct: 1   MTGYAVIDVETTGLSSRNDRVIELAVVHTDTHGTITGHWETL---INPQR--NLTAQHIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I         +  A+ +  +       +  +   +N  FD  +     +R         
Sbjct: 56  HIHASHIQHAPL-FADIATDLLTLL---DGRVPVAHNAPFDARFLAAELHRTG------- 104

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQ 147
               + + D L  M     + P   +
Sbjct: 105 -KTLHQQHDFLCTMNLSRRYLPGVGK 129


>gi|324999723|ref|ZP_08120835.1| oligoribonuclease [Pseudonocardia sp. P1]
          Length = 213

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 43/153 (28%), Gaps = 16/153 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-------DDYLP 53
           MT+  V  D E  G D+  D   + A +  D     +                   D + 
Sbjct: 1   MTDRLVWIDCEMTGLDLGSDALIEIAALVTDGDLNVLGEGVDVVIACDDAQLDAMPDVVR 60

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS----VPNTCIIGYNNIRFDDYYSRNI 109
           D  A    G+T ++     V  AE   R+  +         T  +  N+I  D  +    
Sbjct: 61  DMHARS--GLT-EEVRAATVTIAEAEERVLAYIRAHVPDARTAPLAGNSIATDRGFLARD 117

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
                 D+Y        S    L        F 
Sbjct: 118 MQE--LDAYLHYRMIDVSSVKELARRWFPRVFY 148


>gi|300938801|ref|ZP_07153512.1| exonuclease [Escherichia coli MS 21-1]
 gi|300456266|gb|EFK19759.1| exonuclease [Escherichia coli MS 21-1]
          Length = 220

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 65/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V +    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDI-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|329295775|ref|ZP_08253111.1| Orn [Plautia stali symbiont]
          Length = 182

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 7  NNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILAE 43


>gi|260942501|ref|XP_002615549.1| hypothetical protein CLUG_04431 [Clavispora lusitaniae ATCC 42720]
 gi|238850839|gb|EEQ40303.1| hypothetical protein CLUG_04431 [Clavispora lusitaniae ATCC 42720]
          Length = 283

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 10/128 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPEAVF 59
              V  D E  G D+A D   +   +  D     I+        +         +   V 
Sbjct: 33  KPLVWIDCEMTGLDIAKDHIIEICCIITDGNLNIIDEKGYESTVYVPKKVLDSMNEWCVN 92

Query: 60  ITGIT--PQKALRDG-----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
             G +    K L +       V+ E    I  +   P T ++  N++  D ++    F +
Sbjct: 93  QHGKSGLTAKVLANPQQTLAKVQQELLDYIQFYIPEPRTSLLAGNSVHMDKFFMMKEFPQ 152

Query: 113 NFYDSYRW 120
                +  
Sbjct: 153 VIDHLHYR 160


>gi|15640368|ref|NP_229995.1| oligoribonuclease [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591589|ref|ZP_01678842.1| oligoribonuclease [Vibrio cholerae 2740-80]
 gi|121730775|ref|ZP_01682865.1| oligoribonuclease [Vibrio cholerae V52]
 gi|147673115|ref|YP_001218609.1| oligoribonuclease [Vibrio cholerae O395]
 gi|227080553|ref|YP_002809104.1| oligoribonuclease [Vibrio cholerae M66-2]
 gi|229506863|ref|ZP_04396371.1| oligoribonuclease [Vibrio cholerae BX 330286]
 gi|229508668|ref|ZP_04398162.1| oligoribonuclease [Vibrio cholerae B33]
 gi|229516050|ref|ZP_04405501.1| oligoribonuclease [Vibrio cholerae RC9]
 gi|229606377|ref|YP_002877025.1| oligoribonuclease [Vibrio cholerae MJ-1236]
 gi|254851651|ref|ZP_05241001.1| oligoribonuclease [Vibrio cholerae MO10]
 gi|255747141|ref|ZP_05421084.1| oligoribonuclease [Vibrio cholera CIRS 101]
 gi|262149017|ref|ZP_06028162.1| oligoribonuclease [Vibrio cholerae INDRE 91/1]
 gi|262166933|ref|ZP_06034653.1| oligoribonuclease [Vibrio cholerae RC27]
 gi|298501303|ref|ZP_07011100.1| oligoribonuclease [Vibrio cholerae MAK 757]
 gi|11133789|sp|Q9KV17|ORN_VIBCH RecName: Full=Oligoribonuclease
 gi|172047716|sp|A5F3M7|ORN_VIBC3 RecName: Full=Oligoribonuclease
 gi|9654757|gb|AAF93514.1| oligoribonuclease [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121546555|gb|EAX56757.1| oligoribonuclease [Vibrio cholerae 2740-80]
 gi|121627652|gb|EAX60322.1| oligoribonuclease [Vibrio cholerae V52]
 gi|146314998|gb|ABQ19537.1| oligoribonuclease [Vibrio cholerae O395]
 gi|227008441|gb|ACP04653.1| oligoribonuclease [Vibrio cholerae M66-2]
 gi|227012197|gb|ACP08407.1| oligoribonuclease [Vibrio cholerae O395]
 gi|229346953|gb|EEO11920.1| oligoribonuclease [Vibrio cholerae RC9]
 gi|229354303|gb|EEO19232.1| oligoribonuclease [Vibrio cholerae B33]
 gi|229355968|gb|EEO20887.1| oligoribonuclease [Vibrio cholerae BX 330286]
 gi|229369032|gb|ACQ59455.1| oligoribonuclease [Vibrio cholerae MJ-1236]
 gi|254847356|gb|EET25770.1| oligoribonuclease [Vibrio cholerae MO10]
 gi|255735190|gb|EET90592.1| oligoribonuclease [Vibrio cholera CIRS 101]
 gi|262024638|gb|EEY43319.1| oligoribonuclease [Vibrio cholerae RC27]
 gi|262031207|gb|EEY49826.1| oligoribonuclease [Vibrio cholerae INDRE 91/1]
 gi|297539994|gb|EFH76058.1| oligoribonuclease [Vibrio cholerae MAK 757]
          Length = 181

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D  + +  + A +  D +   +           E    K  +     
Sbjct: 6   QNLIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +      +  +  V E E   +   F           I  N+I  D  +      
Sbjct: 66  HTASGL----VARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 122 RLEAYFHYR 130


>gi|169752556|gb|ACA70074.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis YPIII]
 gi|186696803|gb|ACC87432.1| Exonuclease RNase T and DNA polymerase III [Yersinia
           pseudotuberculosis PB1/+]
          Length = 227

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V     + +   L D   V 
Sbjct: 51  QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVR 110

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++       + +   +  +F           I  N++  D  +        
Sbjct: 111 THTGSGL-VERVKTSPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 169

Query: 114 FYDSYRW 120
               +  
Sbjct: 170 EAYFHYR 176


>gi|89094643|ref|ZP_01167580.1| oligoribonuclease [Oceanospirillum sp. MED92]
 gi|89081113|gb|EAR60348.1| oligoribonuclease [Oceanospirillum sp. MED92]
          Length = 186

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 7/114 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+ +  D E  G + A D   + A +  D     +          +D+ +   D     
Sbjct: 9   KNNLIWIDLEMTGLEPATDVIIEIATIVTDSDLNVLAEGPTLAIHQSDEIMDNMDEWCTN 68

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108
             G +   Q+     V EAE  +   +F           +  N+I  D  +   
Sbjct: 69  QHGKSGLTQRVKESTVTEAEAEQATIEFLKQYVEAGVSPMCGNSIGQDRRFLDK 122


>gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 303

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 64/212 (30%), Gaps = 29/212 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET       D P +     V +  + I++ + +  KP  D   D   + I GI 
Sbjct: 3   FVTIDFET--ATAQRDSPCEIGLTFV-QDGQIIDT-KSWLIKPMYDE-FDYFNILIHGIR 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          E    I           +  +N  FD    R             ++  
Sbjct: 58  PEHVADKPE-FNELWSEIKPLVENK---FLIAHNAGFDISVLRRTLEAYQLPFPTLNYS- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                         Y FS    Q      G  ++ L+ L   N I     H A AD  AT
Sbjct: 113 ------------CSYIFSKKVWQ------GLPAYDLKTLCKVNNINL-KHHRAGADSKAT 153

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
             L     E         +  + K  + +L +
Sbjct: 154 AELTLKAFEIAGVSSIDDFPEKLKTTVGQLYN 185


>gi|254393010|ref|ZP_05008173.1| oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|294812789|ref|ZP_06771432.1| Oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|326441260|ref|ZP_08215994.1| oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|197706660|gb|EDY52472.1| oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|294325388|gb|EFG07031.1| Oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 200

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 59/200 (29%), Gaps = 33/200 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  +  D   + A +  D +   +        +P D  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALATMPEVVR 60

Query: 60  -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            +    G+  + A    + +AE      I +    P    +  N++  D  +        
Sbjct: 61  QMHTASGLLDELAGGTTLADAEERVLAYIREHVREPGKAPLCGNSVGTDRGFLSR----- 115

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D             D+  V      + P                    A  N  E   
Sbjct: 116 --DMPALESWLHYRIVDVSSVKELARRWYPR-------------------AYFNSPEKSG 154

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A AD+  ++A +   RE
Sbjct: 155 NHRALADIRESIAELRYYRE 174


>gi|269793338|ref|YP_003318242.1| Exonuclease RNase T and DNA polymerase III [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100973|gb|ACZ19960.1| Exonuclease RNase T and DNA polymerase III [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 280

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 57/184 (30%), Gaps = 28/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D+ET   +   + P     V V + WE +E          D    +P  V + GIT
Sbjct: 3   FAAIDFET--ANRFHESPCAVGVVVVRQ-WEIVEEASFLILPHRDFRFFEPMNVRVHGIT 59

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P++ L       EF   +    S+     +  +N RFD                   +  
Sbjct: 60  PRRVLSSP----EFPDALEDVISMVQGLPLMAHNARFDLEVLMRTMAL---------YSL 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G +R+D +  +R                       L+ +A   G    N HD   D    
Sbjct: 107 GEARFDWVCSLRLARRAFRLRRC-----------GLESMAEHLGFPF-NHHDPLDDARLC 154

Query: 185 LALV 188
             + 
Sbjct: 155 AKVA 158


>gi|23098512|ref|NP_691978.1| hypothetical protein OB1057 [Oceanobacillus iheyensis HTE831]
 gi|22776738|dbj|BAC13013.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 195

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 55/195 (28%), Gaps = 30/195 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +   +       V +    E I+         A         VFI 
Sbjct: 1   MVKFAAIDFET--ANEKRNSACSVG-VVIMNDTEIIDEFYTLINPLASFRS---GNVFIH 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++        AE    +  +       I+  +N  FD    R    +       ++
Sbjct: 55  GITEEQVQEAP-TFAELWPTLSAYLED---TILIAHNASFDMSVLRQSLNKYDIPCPNYT 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L  ++      P               KL  +A  +GI   N H A  D 
Sbjct: 111 S---------LCTVKISRLIWPQLEN----------HKLHTVANHHGIAL-NHHHAMDDA 150

Query: 182 YATLALVWLIREKKP 196
            A+  +      ++ 
Sbjct: 151 RASAKIFLASLAEQK 165


>gi|296236689|ref|XP_002763437.1| PREDICTED: three prime repair exonuclease 2-like [Callithrix
           jacchus]
          Length = 278

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 63/217 (29%), Gaps = 34/217 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47
             FV  D E  G        A+ +   V          D          ++   +  C  
Sbjct: 50  ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPERDESGAPVLPRVLDKLTLCMC-- 107

Query: 48  ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102
             +     +A  ITG++ +   +  + G  +    R +  F S      C++ +N   +D
Sbjct: 108 -PERPFTAKASEITGLSSEGLVRCRKAG-FDGAVVRTLQAFLSRQAGPICLVAHNGFDYD 165

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
                    R      R +        D L  +R          +  +R  G   + L  
Sbjct: 166 FPLLCAELQRLGARLPRDT-----VCLDTLPALRG----LDHAHRHGTRARGRQGYSLGS 216

Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
           L       E   AH A+ DV+  L +      +    
Sbjct: 217 LFHRYFQAEPSAAHSAEGDVHTLLLIFLHRATELLTW 253


>gi|290473715|ref|YP_003466589.1| putative DNA-directed DNA polymerase [Xenorhabdus bovienii SS-2004]
 gi|289173022|emb|CBJ79795.1| putative DNA-directed DNA polymerase [Xenorhabdus bovienii SS-2004]
          Length = 245

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 64/252 (25%), Gaps = 36/252 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +    VI D ET G     +         ++     +                 P+A  I
Sbjct: 17  LKEDIVILDTETTGLKSDDEIIE---ISIINADGNVL-----LDTLIKPQKKIPPDATRI 68

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             IT +      +  ++  ++  +        ++ YN            +          
Sbjct: 69  HRITNEDVQHKPL-WSDVYKKYREIVE--GKTVVIYN----------KSYDTKIIRQTCK 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
            ++    R      M     +     +   R       KL D    N I+    AH A  
Sbjct: 116 KYELPTPRIKSECAMLLYAKYEGIINK---RTCEYKWHKLTDAIYKNNIQVTGEAHRALT 172

Query: 180 DVYATLALVWLI-----------REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
           D   TL L+  +                  ++      +    +K  + Q +     V  
Sbjct: 173 DARMTLELLKFMACAEVNVSPRVHMNDSVHYKKNKPSNSIQPTKKKSNFQKIILKFFVVV 232

Query: 229 MFGASRSNTALI 240
           +F    +    +
Sbjct: 233 IFFLMLNMIWPL 244


>gi|281201272|gb|EFA75484.1| RNA exonuclease 2 [Polysphondylium pallidum PN500]
          Length = 451

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 7/115 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFI 60
           N  +  D E  G D+  D   + A +  D +   +E          D  L   +      
Sbjct: 273 NRLIWVDLEMTGLDITKDHIMEMACIITDSELNVVEVGPELIVHIDDKDLNSMDQWCTEH 332

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
            G +   +K  +  +   +  +++ +F         C +  N++  D  +     
Sbjct: 333 HGQSGLTEKCRQSKLSIQDAEKQMVEFLRKHVDKGQCPLAGNSVHQDKRFLLKEM 387


>gi|302879827|ref|YP_003848391.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
 gi|302582616|gb|ADL56627.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
          Length = 234

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 23/184 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G ++  DR      V V     ++   + F+     + + + E + + GI  
Sbjct: 43  VVVDVETSGLNLWEDRLISIGAVAVVNGKIELG--DSFYIVLQQEIVSEKENILLHGIGG 100

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
             A  +GV  A     +  F +      +   ++ FD         +    S++  W + 
Sbjct: 101 A-AQAEGVPAA---DALLAFLAFLQKDPLIAFHVTFDQTMIVRAISKYLGFSFKQPWSDM 156

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L+                  +  A    L D      I +   H+A AD   T 
Sbjct: 157 AYVMPALN-----------------PELAARFRSLDDWIAHFDIRNDARHNALADALVTA 199

Query: 186 ALVW 189
            L  
Sbjct: 200 QLFQ 203


>gi|29831803|ref|NP_826437.1| oligoribonuclease [Streptomyces avermitilis MA-4680]
 gi|37999370|sp|Q82CS8|ORN_STRAW RecName: Full=Oligoribonuclease
 gi|29608920|dbj|BAC72972.1| putative 3'->5' exoribonuclease [Streptomyces avermitilis MA-4680]
          Length = 200

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 33/200 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  ++ D   + A +  D +   +        +P D  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60

Query: 60  I----TGITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                +G+  + A    +   EA+    + +    P    +  N++  D  +       +
Sbjct: 61  TMHTASGLLDELAAGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGFL--ARDMS 118

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             ++Y        S    L       A+                         N  E   
Sbjct: 119 ALETYLHYRIVDVSSVKELARRWYPRAYF------------------------NSPEKSG 154

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A AD+  ++A +   RE
Sbjct: 155 NHRALADIRESIAELRYYRE 174


>gi|319399859|gb|EFV88106.1| exonuclease family protein [Staphylococcus epidermidis FRI909]
          Length = 184

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 56/210 (26%), Gaps = 32/210 (15%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M  + FV  D+ET   +           V+V    +  ES                  + 
Sbjct: 1   MAQNAFVALDFET--ANGKRTSICSVGMVKVIDN-QITESFHTL---VNPFDYFTETNIN 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI P+               + QF        +  +N  FD             D+  
Sbjct: 55  VHGIHPEDVQDAPG-FKHVYPYMLQFIDQ---LPVVAHNAAFDMNVLHQSLKSLNIDTPS 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            ++                        Q   R   A  + L+ L     ++    HDA  
Sbjct: 111 LTY--------------------FCSYQLAKRTINAYRYGLKHLMNHYHLDFHGHHDALN 150

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKN 209
           D  A   + + + +      + + +   KN
Sbjct: 151 DAKACAMITYRLLK-HYDDLQSMLNIYEKN 179


>gi|167619167|ref|ZP_02387798.1| oligoribonuclease [Burkholderia thailandensis Bt4]
          Length = 201

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 19/130 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDP 55
           + V  D E  G +   DR  + A V  +   +         I  ++    K  D      
Sbjct: 19  NLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNK--- 75

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110
                 G +    +     V EA+ + +I  F      P    +  N+I  D  +     
Sbjct: 76  ---NTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM 132

Query: 111 YRNFYDSYRW 120
                  +  
Sbjct: 133 PELERFFHYR 142


>gi|238853258|ref|ZP_04643643.1| DNA polymerase III alpha chain [Lactobacillus gasseri 202-4]
 gi|238834142|gb|EEQ26394.1| DNA polymerase III alpha chain [Lactobacillus gasseri 202-4]
          Length = 177

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 55/185 (29%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET             A V V    E ++               D   + + GI
Sbjct: 2   NFTAMDFETANSHPESA--CSLALVMVRNN-EIVDRFYTV---INPQMPFDSRNIRVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE   +I +        ++  +N RFD         R    +  +   
Sbjct: 56  TAEDVKNAP-TMAEVWPKIKKL--YQPGMLVAAHNARFDCRVMEKSLARYNIPAPHY--- 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L   +A              +    + KL  ++ A  I   + H+A +D  A
Sbjct: 110 ---FAIDTLATSKAF-------------EPNLPNHKLDTVSEALDINLWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CAGIL 158


>gi|226949657|ref|YP_002804748.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843422|gb|ACO86088.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto]
          Length = 253

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 70/207 (33%), Gaps = 30/207 (14%)

Query: 4   HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           +++I+D E    +   +            Q   ++++  +  I++      KP      +
Sbjct: 2   NYIIFDLE---FNQGYNNKIEIKCPFEIIQIGAIKLNENFTTIDTFNALI-KPEIYSNLN 57

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P    +T +T     +      E  +   +F +        +      + +   ++Y   
Sbjct: 58  PFVKNLTNLTMDSLNKAN-PFREVYKDFLEFLNKNRNIFCIWGMTDMKELFRNIVYYELD 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +S    + N             + A++   + +P   +   S  ++   L +  ++ + 
Sbjct: 117 TESMPKEYIN-------------VQAYTGKYLNYPKSINVGLSNAVE---LFHITKNNDF 160

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H+A  D + T  +   I  +K K   Y
Sbjct: 161 HNAFNDAFYTAEVFKKIYSEKIKTKIY 187


>gi|15802257|ref|NP_288281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 EDL933]
 gi|15831808|ref|NP_310581.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. Sakai]
 gi|168762363|ref|ZP_02787370.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501]
 gi|168788263|ref|ZP_02813270.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869]
 gi|217328801|ref|ZP_03444882.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588]
 gi|261227657|ref|ZP_05941938.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258177|ref|ZP_05950710.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK966]
 gi|12515897|gb|AAG56834.1|AE005407_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13362022|dbj|BAB35977.1| exonuclease X [Escherichia coli O157:H7 str. Sakai]
 gi|189367397|gb|EDU85813.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501]
 gi|189372044|gb|EDU90460.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869]
 gi|209767640|gb|ACI82132.1| exonuclease X [Escherichia coli]
 gi|217318148|gb|EEC26575.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588]
 gi|320188544|gb|EFW63206.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC1212]
 gi|326342223|gb|EGD66004.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1044]
          Length = 220

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 62/265 (23%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGKIVNPMSHL---VHPDRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|253996722|ref|YP_003048786.1| oligoribonuclease [Methylotenera mobilis JLW8]
 gi|253983401|gb|ACT48259.1| Exonuclease RNase T and DNA polymerase III [Methylotenera mobilis
           JLW8]
          Length = 186

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 7/114 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
            N+ +  D E  G     DR  + A V  D     +  + VF    +D+ L   +A    
Sbjct: 10  QNNLIWLDMEMSGLLPDSDRVLELAAVVTDADLNVLAESPVFVVHQSDEVLDGMDAWNKG 69

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
             G +    K     + EAE S ++ +F           +  N+I  D  +   
Sbjct: 70  AHGRSGLIDKVKASTLSEAEASAQMIEFLKAHVPSGKSPMCGNSICQDRRFMAR 123


>gi|224373300|ref|YP_002607672.1| DNA polymerase III PolC-type [Nautilia profundicola AmH]
 gi|223589694|gb|ACM93430.1| DNA polymerase III PolC-type [Nautilia profundicola AmH]
          Length = 255

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 51/194 (26%), Gaps = 29/194 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + + D E       + +  +   V++ +  + +++ E                  +TGI 
Sbjct: 66  YCVVDIEVNNSKPNIGQVIEIGAVKI-KNLKIVDTFEFLIYAKD----VPKYVERVTGIN 120

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +    +   + E  R+   F       +   +   FD  +  + F +            
Sbjct: 121 QEMLKNE-ASQKEILRKFRLFL---GESVFVAHAADFDYNFLAHQFEKENLGEILN---- 172

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                +    +   A  + L+ L     +     H A  D   T
Sbjct: 173 ----------------RFLCTLTLSQKTLEAERYGLKYLMEELKLPEETHHRALGDAKTT 216

Query: 185 LALVWLIREKKPKL 198
             +  +  E  P  
Sbjct: 217 ARIFLMCLENLPDN 230


>gi|320332661|ref|YP_004169372.1| Exonuclease RNase T and DNA polymerase III [Deinococcus
           maricopensis DSM 21211]
 gi|319753950|gb|ADV65707.1| Exonuclease RNase T and DNA polymerase III [Deinococcus
           maricopensis DSM 21211]
          Length = 183

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 57/187 (30%), Gaps = 19/187 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D ET G D A+        V   +  E          +  D Y  DPEA+ + GI 
Sbjct: 6   IIFLDTETGGMDPAVHPLLTVGLV-TLQDGEIT-RPLHLRVR-HDTYTVDPEAMRVNGID 62

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                 +    AE +  I  + +     ++G +N  FD  +      R            
Sbjct: 63  LLTHHDEAHPPAEVAAAIRAYAAEVGRVMLGGHNFAFDLGFL-----RTLLPDRSR---- 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   +D           GI             L  LA   GIE+  AHDA  D   T
Sbjct: 114 -VFRCGHVDTKTTAQFLIHAGI-----LPKKVGTALDQLAKHFGIEY-QAHDALEDARTT 166

Query: 185 LALVWLI 191
             +    
Sbjct: 167 AIVYNEF 173


>gi|217974867|ref|YP_002359618.1| oligoribonuclease [Shewanella baltica OS223]
 gi|217500002|gb|ACK48195.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS223]
          Length = 181

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G +  +DR  + A +  D++   I    V     +DD L   D      
Sbjct: 6   NNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       EA+   +   F           +  N+I  D  +          
Sbjct: 66  HGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELED 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|114778579|ref|ZP_01453406.1| hypothetical protein SPV1_06299 [Mariprofundus ferrooxydans PV-1]
 gi|114551168|gb|EAU53728.1| hypothetical protein SPV1_06299 [Mariprofundus ferrooxydans PV-1]
          Length = 179

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 48/194 (24%), Gaps = 25/194 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +  ++ D ET G           A +             V             EA  I 
Sbjct: 1   MSDILVLDTETTGLGDD-------AEIIEIGIINGSGE-TVMNTLVKPTISIPEEATAIH 52

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT    L   V  A+    +          ++ YN         ++             
Sbjct: 53  GITDNDLLNAPV-FADVVEELEGLIQ--GKILLIYNADYDLRLLRQSARKS--------K 101

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN---AHDAK 178
                   ++  VM     F  +   W  + +      L + A   G         H A 
Sbjct: 102 VQINLEPAEVRCVMLEYAKFFGE---WNPKYENWKWQSLANAARRTGYVPAEGMLPHRAI 158

Query: 179 ADVYATLALVWLIR 192
           AD  A L +   + 
Sbjct: 159 ADCVAALHVYRHMH 172


>gi|152979466|ref|YP_001345095.1| ribonuclease T [Actinobacillus succinogenes 130Z]
 gi|150841189|gb|ABR75160.1| ribonuclease T [Actinobacillus succinogenes 130Z]
          Length = 226

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 57/200 (28%), Gaps = 28/200 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V  +++ + + + + T     +P +    +PE++ I G
Sbjct: 30  VVIDVETAGLNCQTDGLLELAAVTLKMNDRGDLLPDQTYHCHIRPFEGAGINPESMKING 89

Query: 63  ITPQK-ALRD-GVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I  +        V E+E    + Q              II  +N  FD  +      R  
Sbjct: 90  IDLESPIRNAIAVSESEAITGLFQMVRRGQKNAGCQRSIIVAHNAAFDHGFVMAAAERTK 149

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                +          L  +M                 D                    A
Sbjct: 150 IKRNPFHPFGSFDTATLSGLMFGQTVLIKACQSASIPFDSN-----------------QA 192

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   +   
Sbjct: 193 HSALYDTERTAELFCYMVNH 212


>gi|300779659|ref|ZP_07089515.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300533769|gb|EFK54828.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 959

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 12/117 (10%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+ H  F + D  T G     DR  +   V +D+Q  +  + E    +P  D        
Sbjct: 1   MSPHPGFAVIDVVTTGFG-GSDRIVEVGVVLLDQQLREQGTWETL-VQPNRDI----ATC 54

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            +  +T          E E +  + Q        I   +N  F+  +    F R   
Sbjct: 55  HVHKLTATHLKNAPTWE-EVAPELAQVIR---GRIGVAHNASFEKRFLSKEFCRVGI 107


>gi|255690157|ref|ZP_05413832.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624444|gb|EEX47315.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 184

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 27/206 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V ++ + I        +PA +Y        + 
Sbjct: 1   MRNFAAIDFET--ANGKRTSICSVGVVIV-KEGKIINKIY-RLIRPAPNY-YTQWTTAVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T    +       E    I       +   +  +N  FD+        R  ++ Y  +
Sbjct: 56  GLTYDDTIEAD-DFPEVWAEIKPLI---DGLPLVAHNSPFDE-----GCLRAVHELYGMT 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      +      RA                   + +L  +A   G +  N H A AD 
Sbjct: 107 Y----PPYKFYCTCRASRKVF---------GKELPNHQLHTVAARCGYDLTNHHHALADA 153

Query: 182 YATLALVWLIREKKPKLFEYLYDYRN 207
            A   +  LI  +  K        R+
Sbjct: 154 EACAQIALLIIPEPKKTKSSRRKTRD 179


>gi|221369901|ref|YP_002520997.1| Exonuclease [Rhodobacter sphaeroides KD131]
 gi|221162953|gb|ACM03924.1| Exonuclease [Rhodobacter sphaeroides KD131]
          Length = 293

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 54/217 (24%), Gaps = 28/217 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D ET           Q     V            F          DP  V + GI 
Sbjct: 12  FIALDVET--ACSDAGSICQIGLACVFPDNRI----HTFSTLVNPGTRFDPFNVRLHGIG 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P       +   E    +    S      +  ++  FD             +   + W  
Sbjct: 66  PDHVSGA-LRFDELLDHLFPLLSRH---HLVQHS-NFDKQALNAACRSCGREPPDFRWA- 119

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + R  +                    L +L    G++  N HDA  D  A 
Sbjct: 120 -----DSVTIARRAWP----------ELLRNGGHGLGNLKRVLGLDF-NHHDAGEDARAA 163

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
             +V          FE L     KN    +    + T
Sbjct: 164 ALVVLHAETHLNLTFEELIKPARKNHPAAITREGDPT 200


>gi|170752204|ref|YP_001783349.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659331|gb|ACB28381.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
          Length = 298

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 42/184 (22%), Gaps = 34/184 (18%)

Query: 3   NHFV--IYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAV 58
             F+  + D ET G D   D   +   ++ +           +              E  
Sbjct: 37  PTFIGLVVDVETTGTDFGTDEVIELGILKFEYGASGRIYRVLDTLNQLQEPRKPIPVEIT 96

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT                              G                     + 
Sbjct: 97  RLTGITDADVA-------------------------GQRIDDAAVARIAADAAVVIAHNA 131

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            + W     RW     +     +     Q P R +G    KL  L    G  H   H A 
Sbjct: 132 SFDWQMCEPRWP----VFREKNWGCSCHQIPWRAEGHEGLKLGYLLSDCGFFHRG-HRAI 186

Query: 179 ADVY 182
            D +
Sbjct: 187 DDCH 190


>gi|319944217|ref|ZP_08018493.1| oligoribonuclease [Lautropia mirabilis ATCC 51599]
 gi|319742512|gb|EFV94923.1| oligoribonuclease [Lautropia mirabilis ATCC 51599]
          Length = 236

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 55/197 (27%), Gaps = 34/197 (17%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62
            V  D E  G    +DR  + A V  D +   +    V      D  L   D       G
Sbjct: 57  LVWLDMEMTGLHPDIDRIIEVAMVVTDSELNLLAEGPVLAIHQPDTVLDAMDKWNQSTHG 116

Query: 63  IT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            +    +     + EA     + +F           +  N+I  D  +      R   + 
Sbjct: 117 KSGLIDRVRASTLTEAAAQGILLEFIRAWAPEGKSPMCGNSIGQDRRFMA----RYMPEL 172

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
             W          L ++ R                +   SFK +            AH A
Sbjct: 173 ESWFHYRNLDVSTLKELARR------------WAPEVYRSFKKR-----------GAHTA 209

Query: 178 KADVYATLALVWLIREK 194
            AD+  ++  +   R+ 
Sbjct: 210 LADIQESIDELRHYRQH 226


>gi|315127531|ref|YP_004069534.1| DNA polymerase, exonuclease activity [Pseudoalteromonas sp. SM9913]
 gi|315016045|gb|ADT69383.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           sp. SM9913]
          Length = 207

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 50/188 (26%), Gaps = 20/188 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +   +++ D E  G D         A V +D    +     +       +     ++   
Sbjct: 21  LKQRYLVIDLELTGLDPKQHEIVSVAWVLID---NECIKNSLSQHLVNKEVKSLEQSPVF 77

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+       G         +   FS    CI+ ++N   D  + +             
Sbjct: 78  HGISTDSVA-QGQSLQSIITSLSAHFSD---CILVFHNAMLDWGFLKLALKNAGIT---- 129

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + +         I+            L +      +   + H A  D
Sbjct: 130 --QRPKLIIDTLQIEKKRLLKHSSDIKL-------DDLTLNECRKRYDLPSYHCHHALTD 180

Query: 181 VYATLALV 188
             AT  L+
Sbjct: 181 AQATAELL 188


>gi|282855067|ref|ZP_06264399.1| exonuclease [Propionibacterium acnes J139]
 gi|282581655|gb|EFB87040.1| exonuclease [Propionibacterium acnes J139]
 gi|314982129|gb|EFT26222.1| exonuclease [Propionibacterium acnes HL110PA3]
 gi|315090368|gb|EFT62344.1| exonuclease [Propionibacterium acnes HL110PA4]
 gi|315093651|gb|EFT65627.1| exonuclease [Propionibacterium acnes HL060PA1]
 gi|315103870|gb|EFT75846.1| exonuclease [Propionibacterium acnes HL050PA2]
 gi|327325415|gb|EGE67219.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL103PA1]
          Length = 210

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 36/199 (18%)

Query: 3   NHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
             FV  D+ET     G         Q A V+V    + ++        P        E  
Sbjct: 41  PSFVAVDFETANRMGGVSA-----CQVAMVKV-CDGQIVDRLNTLIRPPKGWD--SFEFT 92

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           ++ GI+              +  +  F    +   +  +N  FD    R        D +
Sbjct: 93  YLHGISAADVADAP-SWTNIADTVSHFV---DGVTVYAHNAAFDSRVWRQ------LDEH 142

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177
             +       +      +                 G  ++KL  +  A    +  N H A
Sbjct: 143 FGTTTLPAPFFCSYRTAQ-------------RLIPGLPNYKLPTVLHACAPNYQLNHHRA 189

Query: 178 KADVYATLALVWLIREKKP 196
            +D  A   +V  ++ +  
Sbjct: 190 DSDAEACALIVCELQRRAQ 208


>gi|226311041|ref|YP_002770935.1| hypothetical protein BBR47_14540 [Brevibacillus brevis NBRC
          100599]
 gi|226093989|dbj|BAH42431.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 113

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 4  HFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
          +++I+D E           +   +   V+++     I   + F  KP  + +       +
Sbjct: 2  NYIIFDLEATCWENDRTKQNEIIEIGAVKLNENLAVIGEFQTFI-KPKLNPILSDFCKKL 60

Query: 61 TGITPQKALRDGVVEAEFSRRIHQFF 86
          T I+ ++  +      E       + 
Sbjct: 61 TSISQKEVDQAP-SFGEAISHFQNWI 85


>gi|154338964|ref|XP_001565704.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 499

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 69/246 (28%), Gaps = 45/246 (18%)

Query: 8   YDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +D E  G      D   +   +            ++       +P       P    +T 
Sbjct: 93  FDMEFTGPPVFTADGPTEDITELGVY-----SPLLDEVFSCLVQPVCGRKQGPGVEELTH 147

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNT----------CIIGYNNIRFDDYYSRNIFYR 112
           IT     ++G+   E  +R  +F   P             ++ +     D    +     
Sbjct: 148 ITDAMLAKEGIPFLEAWQRFLKFVQTPQPNEIPGSEERILLLSHGGKLADVSLIKWT--- 204

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EH 171
              + +     +     D + ++R  +   P        D    S+KL DL     I   
Sbjct: 205 --LEKFHMELPSSFVFGDTIHLIRDAHRRRPVT-----VDKHPPSWKLVDLVQWLHISPT 257

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231
           ++AH A  D   T              ++ LY    +    ++   + + P    +    
Sbjct: 258 LSAHRAGNDARMT--------------WDALYHTLLRYGDDEMTPREQLVPRFFDAEAKQ 303

Query: 232 ASRSNT 237
             R  T
Sbjct: 304 RLREYT 309


>gi|50843187|ref|YP_056414.1| putative DNA polymerase III epsilon subunit (exonuclease)
           [Propionibacterium acnes KPA171202]
 gi|50840789|gb|AAT83456.1| putative DNA polymerase III epsilon subunit (exonuclease)
           [Propionibacterium acnes KPA171202]
 gi|314924210|gb|EFS88041.1| exonuclease [Propionibacterium acnes HL001PA1]
 gi|314964999|gb|EFT09098.1| exonuclease [Propionibacterium acnes HL082PA2]
 gi|315106149|gb|EFT78125.1| exonuclease [Propionibacterium acnes HL030PA1]
          Length = 236

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 36/199 (18%)

Query: 3   NHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
             FV  D+ET     G         Q A V+V    + ++        P        E  
Sbjct: 67  PSFVAVDFETANRMGGVSA-----CQVAMVKV-CDGQIVDRLNTLIRPPKGWD--SFEFT 118

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           ++ GI+              +  +  F    +   +  +N  FD    R        D +
Sbjct: 119 YLHGISAADVADAP-SWTNIADTVSHFV---DGVTVYAHNAAFDSRVWRQ------LDEH 168

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177
             +       +      +                 G  ++KL  +  A    +  N H A
Sbjct: 169 FGTTTLPAPFFCSYRTAQ-------------RLIPGLPNYKLPTVLHACAPNYQLNHHRA 215

Query: 178 KADVYATLALVWLIREKKP 196
            +D  A   +V  ++ +  
Sbjct: 216 DSDAEACALIVCELQRRAQ 234


>gi|58258529|ref|XP_566677.1| oligoribonuclease [Cryptococcus neoformans var. neoformans JEC21]
 gi|57222814|gb|AAW40858.1| oligoribonuclease, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 184

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 8/114 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFITG 62
            V  D E  G D   DR  + A +  D +   ++    +  K   + L +         G
Sbjct: 13  LVWVDCEMTGLDFLNDRIIEIAVIITDGRLNPVDGGISYIIKTPKEVLDNMGDWCREQHG 72

Query: 63  IT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIF 110
            +   Q  L           ++  +           ++  +++  D  +     
Sbjct: 73  KSGLIQACLDSPYSYDTVVEKVLDYIRRWIPERGAGLLAGSSVHADMRFMLMGM 126


>gi|311743281|ref|ZP_07717088.1| possible DNA polymerase III subunit epsilon [Aeromicrobium marinum
           DSM 15272]
 gi|311313349|gb|EFQ83259.1| possible DNA polymerase III subunit epsilon [Aeromicrobium marinum
           DSM 15272]
          Length = 278

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 49/191 (25%), Gaps = 29/191 (15%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G D   DR   FA          ++                  A  + G+    
Sbjct: 59  LDLETTGVDPLRDRVVSFAL---------LDDQVERSGLVDPGVPIPEGASAVHGLDAAA 109

Query: 68  ALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E    + Q        ++   N  +D    R    R       WS   
Sbjct: 110 LRGAPAPRGALTEVLDWVQQVVDRGVPLVVF--NAPYDLTMLRAEAERWGLVQPDWSRLL 167

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                             P  + W          +L D+A    +E  NAHDA AD  A 
Sbjct: 168 ---------------VIDPYVVDWGIVRGELGPRRLTDVAAYYEVELANAHDALADARAA 212

Query: 185 LALVWLIREKK 195
           L +   I  + 
Sbjct: 213 LEVARQIAARH 223


>gi|300855094|ref|YP_003780078.1| putative exonuclease [Clostridium ljungdahlii DSM 13528]
 gi|300435209|gb|ADK14976.1| predicted exonuclease [Clostridium ljungdahlii DSM 13528]
          Length = 202

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 7/186 (3%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + + +D ET G         Q + + VD   +  ++         D   P   A  + G 
Sbjct: 2   NMIFFDTETTGLRPGN--ICQLSYILVDTSAKPTKTIGKNIFFAVDYIEPS--AEKVHGF 57

Query: 64  TPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           T +    L  G+   +        F   +  +IG+N      + S      N   + + +
Sbjct: 58  TVETLYKLSSGMNFKDHLDEFLNDFQNAD-ILIGHNVNFDIKFLSSEFKNCNEILNIKHT 116

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +   N   ++ ++           ++   R     +  +  ++        N HDA+ D 
Sbjct: 117 FCTMNYYKNICNLKNRYNKCKAPRLEEVVRFLHIENPYINAVSKKYFNGTGNFHDARFDT 176

Query: 182 YATLAL 187
            AT  L
Sbjct: 177 TATYLL 182


>gi|95930297|ref|ZP_01313034.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95133549|gb|EAT15211.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 193

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 62/198 (31%), Gaps = 26/198 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D ET G D+  D     A V++ ++    +  E +           PE++   GIT
Sbjct: 6   FCIVDLETTGLDLTTDTIINAAAVKI-KKGRITKIYETY---VKPPTSIPPESIQFHGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +       E       F    ++ I G++         R++      +     W +
Sbjct: 62  DDMLVDKP-SIGEVLPEFMTFI--GDSMITGHHINFDLKMLDRHLRENYDCNLEGAPWLD 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 L+                    +  TS +L DL     I+    H A  D  AT
Sbjct: 119 TMLLHKLV-------------------MENNTSTQLDDLLNVYCIDCEQRHRALGDSIAT 159

Query: 185 LALVWLIREKKPKLFEYL 202
             +   I  +    ++ L
Sbjct: 160 AKVFLRILHELSNSYQTL 177


>gi|310640616|ref|YP_003945374.1| exonuclease rnase t and DNA polymerase iii [Paenibacillus polymyxa
           SC2]
 gi|309245566|gb|ADO55133.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus polymyxa
           SC2]
          Length = 223

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 53/190 (27%), Gaps = 24/190 (12%)

Query: 5   FVIYDYE-TFGRDVALD-RPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           ++IYD E T  R+            V+V   +      ++   F  +P++  +   + V 
Sbjct: 3   YIIYDLEFTVSRNARYSSEIIDIGAVKVIHGEDGLFVADTFHSF-VRPSNRPVISTDTVQ 61

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            TGIT +      +   E  ++   +    +T  +             +    +      
Sbjct: 62  FTGITQRDIDAAPL-FPEAVKQFIAWLGTDSTYYLCAWGPDDRQKLVSHCRTHHV----- 115

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL-QDLALANGIEHVNAHDAK 178
                       L  +           +  S +       L Q L L N       H A 
Sbjct: 116 -----------DLGWIHNTNDIQKQISRLFSSNGKYRQLSLSQALELCNIEFDGQQHRAL 164

Query: 179 ADVYATLALV 188
            D   T  + 
Sbjct: 165 DDAVNTAQVF 174


>gi|300214810|gb|ADJ79226.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius CECT 5713]
          Length = 177

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 54/190 (28%), Gaps = 28/190 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +         A   V       +           D       + + GI
Sbjct: 2   NFVAIDFET--ANPKRYSACSLALTVVKNNL-IADQFYSL---IKPDTDFSWRNIQVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++         E    I  FF+  N  +I  +N  FD                   +D
Sbjct: 56  TEKQVQNAP-SFPELWPHIQNFFTPNN--LIVAHNASFDSSVLLRT---------LEHYD 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + LLD +R    F  D              KL  +     I+  + H+A  D  A
Sbjct: 104 ITLPHYQLLDTLRTSKKFFKDFEN----------HKLDTICNNLNIDLKHHHNALFDSTA 153

Query: 184 TLALVWLIRE 193
              ++     
Sbjct: 154 CAEILLYQAN 163


>gi|71910349|ref|YP_281899.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS5005]
 gi|71853131|gb|AAZ51154.1| ATP-dependent helicase [Streptococcus pyogenes MGAS5005]
          Length = 819

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 8   KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 57

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +       
Sbjct: 58  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 109

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              ++    R D +++ +  +                  + L  L+    I+   AH A 
Sbjct: 110 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           AD  AT  L   + +K   L     +
Sbjct: 154 ADARATAILFLRLLQKIESLPIECLE 179


>gi|126172800|ref|YP_001048949.1| oligoribonuclease [Shewanella baltica OS155]
 gi|153002280|ref|YP_001367961.1| oligoribonuclease [Shewanella baltica OS185]
 gi|160877004|ref|YP_001556320.1| oligoribonuclease [Shewanella baltica OS195]
 gi|304410908|ref|ZP_07392525.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS183]
 gi|307304921|ref|ZP_07584671.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           BA175]
 gi|166216585|sp|A3D017|ORN_SHEB5 RecName: Full=Oligoribonuclease
 gi|166216586|sp|A6WSV9|ORN_SHEB8 RecName: Full=Oligoribonuclease
 gi|125996005|gb|ABN60080.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica
           OS155]
 gi|151366898|gb|ABS09898.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS185]
 gi|160862526|gb|ABX51060.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS195]
 gi|304350805|gb|EFM15206.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS183]
 gi|306912323|gb|EFN42747.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           BA175]
 gi|315269207|gb|ADT96060.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS678]
          Length = 181

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G +  +DR  + A +  D++   I    V     +DD L   D      
Sbjct: 6   NNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       EA+   +   F           +  N+I  D  +          
Sbjct: 66  HGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELED 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|315502266|ref|YP_004081153.1| exonuclease rnase t and DNA polymerase iii [Micromonospora sp. L5]
 gi|315408885|gb|ADU07002.1| Exonuclease RNase T and DNA polymerase III [Micromonospora sp. L5]
          Length = 196

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 12/156 (7%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G D+  D   + A +  D     +           D+ L   PE V 
Sbjct: 1   MADLLVWIDCEMTGLDLRRDALIEVAALVTDPDLNVLGDGVDVVIHADDEALDGMPEIVR 60

Query: 60  I----TGITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
                +G+T ++  R  V  AE        +  +   P T  +  N+I  D  +      
Sbjct: 61  TMHAKSGLT-EEVRRSTVTLAEAEDMVLDYVTSYVKDPRTAPLCGNSIATDRGFLARDMT 119

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
           R   D++        S    L        +     +
Sbjct: 120 R--LDAHLHYRMIDVSSIKELCRRWYPRVYFGQPQK 153


>gi|291617739|ref|YP_003520481.1| ExoX [Pantoea ananatis LMG 20103]
 gi|291152769|gb|ADD77353.1| ExoX [Pantoea ananatis LMG 20103]
          Length = 223

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 52/193 (26%), Gaps = 40/193 (20%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M     + D ET G         + A V V    + +          + D     +A+ +
Sbjct: 1   MMLR--VIDTETCGL---QGGVVEVASVDV-IDGQIVNPMSDL---VSPDRPISRQAMAV 51

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I+    +    +E               +     +N  FD         R        
Sbjct: 52  HRISEAMVMGKPPIE-------EAILRYHGSPFYVAHNASFD---------RRMLPEMHG 95

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W         + + R +         WP    G  + +            ++AH A  D
Sbjct: 96  EW------ICTMTLARQL---------WPGIKYGNQALRHSLKLDVTPPADLHAHRALYD 140

Query: 181 VYATLALVWLIRE 193
            Y T AL+  I E
Sbjct: 141 CYVTAALLIRIME 153


>gi|222153714|ref|YP_002562891.1| DNA polymerase III subunit epsilon [Streptococcus uberis 0140J]
 gi|222114527|emb|CAR43445.1| putative exonuclease [Streptococcus uberis 0140J]
          Length = 196

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 32/196 (16%)

Query: 4   HFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           HF+ +D E    +   D+    Q + V++D    +I+    +      D         +T
Sbjct: 6   HFIAFDLE---FNTVNDKSHLIQLSAVKIDAD-TEIDHFNSY---VYTDVPLQSFINGLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  K  +   +EA        F S     +IGYN  + D                   
Sbjct: 59  GITADKIAQAPKIEA-VLSAFKAFVSDYP--LIGYNAHKSDLPILAENGLDL-------- 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             + + R D+ D      +   +GI          + KL  +A   GI+    H++  D 
Sbjct: 108 --SNHYRVDVYDEAFERRSTDLNGIA---------NLKLTSVADFLGIK-GRGHNSLEDA 155

Query: 182 YATLALVWLIREKKPK 197
             T  +     E    
Sbjct: 156 RMTAHVYQHFMELDAN 171


>gi|150025263|ref|YP_001296089.1| DNA polymerase III, epsilon subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771804|emb|CAL43278.1| Probable DNA polymerase III, epsilon subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 160

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 53/186 (28%), Gaps = 31/186 (16%)

Query: 4   HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F   D+ET                V V +    ++        P + Y   P  + + G
Sbjct: 2   TFTAIDFETATAFHP-----CSVGIVTV-QNGVIVDEFVTLIKPPNNQY--SPFTIAVHG 53

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I P+  +       E    I +         +  +N  FD             D   +  
Sbjct: 54  IRPRDTVNA-KSFLEVYPEIKKRLQNK---TVVAHNESFDRNVLAKSMALYGLD---YET 106

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N ++RW+    +     F P               KL D      I+  N H+A +D  
Sbjct: 107 LNISNRWECTLKIYKAKGFKPT--------------KLSDCCQEMNIKL-NHHEALSDAR 151

Query: 183 ATLALV 188
           A   L 
Sbjct: 152 ACAKLY 157


>gi|328882628|emb|CCA55867.1| 3-to-5 oligoribonuclease [Streptomyces venezuelae ATCC 10712]
          Length = 200

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 56/206 (27%), Gaps = 45/206 (21%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  +  D   + A +  D +   +        +P D  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGDGVDIVIRPPDAALETMPEIVR 60

Query: 60  ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
                 Q     G+             EA+    I +    P    +  N++  D  +  
Sbjct: 61  ------QMHTASGLLDALAGGTTLADAEAQVLAYIREHVKEPGKAPLCGNSVSTDRGFLA 114

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
                   D             D+  V      + P                    A  N
Sbjct: 115 R-------DMPALESHLHYRIVDVSSVKELARRWYPR-------------------AYFN 148

Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
             E    H A AD+  ++A +   RE
Sbjct: 149 SPEKNGNHRALADIRESIAELRYYRE 174


>gi|312863107|ref|ZP_07723345.1| DNA polymerase III, epsilon subunit [Streptococcus vestibularis
           F0396]
 gi|311100643|gb|EFQ58848.1| DNA polymerase III, epsilon subunit [Streptococcus vestibularis
           F0396]
          Length = 196

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 28/195 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ +D E F     +    Q + +++++  E+++  + F      D         +TG
Sbjct: 5   ETYIAFDLE-FNTVDGVSHIIQVSAIKLNQH-EEVDQFDSF---VYSDVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  K  +   +E+        F    +T +IGYN ++ D          +  + Y    
Sbjct: 60  ITADKIAKAPKLES-VLADFKSFV--GDTPLIGYNALKSDLPI-LAENGLDLEEQYA--- 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D+ D      A   +GI          + KL  +A   GI+  + H++  D  
Sbjct: 113 ------LDVSDEAFDRRASDLNGI---------VNLKLTSVADFFGIK-GHGHNSLEDAR 156

Query: 183 ATLALVWLIREKKPK 197
            T  +     E    
Sbjct: 157 MTAQIYEKFLELDEN 171


>gi|168032166|ref|XP_001768590.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680089|gb|EDQ66528.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 180

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 17/121 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPAD-------DYL 52
           M    V  D E  G D+  DR  + A +  D +  + +E   +   +P D          
Sbjct: 1   MQMPLVWIDLEMSGLDIEKDRILEIACIVTDGKLEKIVEGPVIVISQPEDVLQGMGEWCQ 60

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP-----NTCIIGYNNIRFDDYYSR 107
               A  +T           V E +  + + +F            ++  N+I  D  + +
Sbjct: 61  EHHAASGLT----DSVRASTVTEDQAQQEVLEFLRKHTRGNSGQSMLAGNSIYVDLKFLK 116

Query: 108 N 108
            
Sbjct: 117 K 117


>gi|149041580|gb|EDL95421.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_e
          [Rattus norvegicus]
          Length = 113

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
          M    V  D E  G D+  D+  + A +  D     +        K  D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 90


>gi|149041581|gb|EDL95422.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_f
          [Rattus norvegicus]
          Length = 154

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
          M    V  D E  G D+  D+  + A +  D     +        K  D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 90


>gi|26355291|dbj|BAC41132.1| unnamed protein product [Mus musculus]
          Length = 121

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
          M    V  D E  G D+  D+  + A +  D     +        K  D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 90


>gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
          Length = 309

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  E IE       KP +     P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIIEEVHHLI-KPKEMRFM-PINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+    + +   +   +I  +F+     ++  +N  FD         RN  + Y     
Sbjct: 57  RPRMVQDE-LEFDKVWEKIKHYFNKN---LVIAHNASFDISVL-----RNTLELYNLE-- 105

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  +  M+    F  +              +L  +    G E    HDA AD  A
Sbjct: 106 --MPSFQYICTMKLSRNFYSNLDN----------ARLNTVNNFLGYEF-KHHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|116629923|ref|YP_815095.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus gasseri ATCC 33323]
 gi|282851483|ref|ZP_06260848.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|311110442|ref|ZP_07711839.1| exonuclease [Lactobacillus gasseri MV-22]
 gi|116095505|gb|ABJ60657.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus gasseri ATCC 33323]
 gi|282557451|gb|EFB63048.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|311065596|gb|EFQ45936.1| exonuclease [Lactobacillus gasseri MV-22]
          Length = 177

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET             A V V    E ++               D   + I GI
Sbjct: 2   NFTAMDFETANSHPESA--CSLALVMVRNN-EIVDRFYTV---INPQMPFDGRNIRIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE   +I +        ++  +N RFD         R    +  +   
Sbjct: 56  TAEDVKNAP-TMAEVWPKIKKL--YQPGMLVAAHNARFDCRVMEKSLARYNIPAPHY--- 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L   +A              +    + KL  ++ A  I   + H+A +D  A
Sbjct: 110 ---FAIDTLATSKAF-------------EPNLPNHKLDTVSEALDINLWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CAGIL 158


>gi|326794723|ref|YP_004312543.1| ribonuclease T [Marinomonas mediterranea MMB-1]
 gi|326545487|gb|ADZ90707.1| Ribonuclease T [Marinomonas mediterranea MMB-1]
          Length = 224

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 67/218 (30%), Gaps = 26/218 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +R+D   +  I  T  +  +P +    +  A+  TG
Sbjct: 16  VVIDVETAGFNEKTDALLEIAASILRMDENGDLYIHETLEYIVQPFEGANLEKAALDFTG 75

Query: 63  ITPQKALRDGVVEAE----FSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R+ + E+E       ++ +          I+  +N  FD  +      R    
Sbjct: 76  IDPFDPDRNDMPESEALTQMLSKVRKELKSVGCKRAILVGHNSSFDHGFLNAAIERCSIK 135

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L  +       +                     A      +  AH 
Sbjct: 136 RNPFHPFSSFDTASLAGLAYGQTVLAKACE-----------------AANIPFSNSQAHS 178

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
           AK D   T  L   I  +  ++  +     ++     +
Sbjct: 179 AKYDTEKTAELFCEIVNRWKQMGGWSQFSESQESAETM 216


>gi|306827727|ref|ZP_07460999.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes ATCC 10782]
 gi|304430045|gb|EFM33082.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes ATCC 10782]
          Length = 819

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 8   KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 57

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +       
Sbjct: 58  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 109

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              ++    R D +++ +  +                  + L  L+    I+   AH A 
Sbjct: 110 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLGHLSRQLNIDLAEAHTAI 153

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           AD  AT  L   + +K   L     +
Sbjct: 154 ADARATAILFLRLLQKIESLPIECLE 179


>gi|257138397|ref|ZP_05586659.1| oligoribonuclease [Burkholderia thailandensis E264]
          Length = 201

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 19/130 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDP 55
           + V  D E  G +   DR  + A V  +   +         I  ++    K  D      
Sbjct: 19  NLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNK--- 75

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110
                 G +    +     V EA+ + +I  F      P    +  N+I  D  +     
Sbjct: 76  ---NTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM 132

Query: 111 YRNFYDSYRW 120
                  +  
Sbjct: 133 PELERFFHYR 142


>gi|253999147|ref|YP_003051210.1| oligoribonuclease [Methylovorus sp. SIP3-4]
 gi|253985826|gb|ACT50683.1| Exonuclease RNase T and DNA polymerase III [Methylovorus sp.
           SIP3-4]
          Length = 182

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
            N+ +  D E  G     DR  + A V  D     +  + V     +D  L   +A    
Sbjct: 5   QNNLIWLDMEMSGLLPDSDRILELAAVVTDADLNILGESPVLVVHQSDAVLDGMDAWNKG 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    K     + E   S+++ +F           +  N+I  D  +         
Sbjct: 65  THGKSGLIDKVKASTLDEVSASQQMIEFLKQYVPAGKSPMCGNSICQDRRFMARYMPELE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 SYFHYR 130


>gi|153808149|ref|ZP_01960817.1| hypothetical protein BACCAC_02435 [Bacteroides caccae ATCC 43185]
 gi|149129052|gb|EDM20268.1| hypothetical protein BACCAC_02435 [Bacteroides caccae ATCC 43185]
          Length = 200

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 27/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V +    +        +PA +Y        I 
Sbjct: 1   MKDFAAIDFET--ANGKRTSVCSVGIVIV-KGGRIVNKIY-RLIRPAPNY-YTQWTTAIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T    +       E    I           +  +N  FD+        R  ++ Y  +
Sbjct: 56  GLTYDDTMEAD-DFPEVWAEIKPLLE---GLPLVAHNSPFDE-----GCLRAVHELYGMT 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + N    +      R                    + +L  +A   G    N H A AD 
Sbjct: 107 YPN----YKFYCTCRTSRKVF---------GKDLPNHQLHTVAERCGYNLENHHHALADA 153

Query: 182 YATLALV 188
            A   + 
Sbjct: 154 EACAQIA 160


>gi|37200012|dbj|BAC95841.1| oligoribonuclease [Vibrio vulnificus YJ016]
          Length = 227

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D  + +  + A +  D +   +    V     +++ L   D      
Sbjct: 52  QNLIWIDLEMTGLDPDVHKIIEIASIVTDSELNILAEGPVLAIHQSEEELAKMDEWCTNT 111

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+  ++     + E E   +   F           I  N+I  D  +         
Sbjct: 112 HTGSGL-VERVRGSQITEQEAVEQTIAFLEKWVPKGVSPICGNSIGQDRRFLYRHMPELE 170

Query: 115 YDSYRW 120
              +  
Sbjct: 171 GYFHYR 176


>gi|325963798|ref|YP_004241704.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469885|gb|ADX73570.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 334

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 52/202 (25%), Gaps = 27/202 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D+ET   +     P      +V R     E        P +    D   V I GI 
Sbjct: 3   FTAIDFET--ANGFRGSPCAVGLTKV-RGGRIAEEASWLMQPPLNHDHFDYHNVRIHGIR 59

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          E    I  F       I+  +N  FD    R+    +           
Sbjct: 60  PEHVAGKPR-FGELFPEIGAFI---GDDILAAHNAAFDLGVIRSGLEVSGLP-------- 107

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               +D +  +                     S  L   A   G+  VN HDA  D  A 
Sbjct: 108 -GPAYDYVCTVMLSRRCY-----------SLVSNSLPFAAEEAGVPLVNHHDAAEDARAC 155

Query: 185 LALVWLIREKKPKLFEYLYDYR 206
             ++  I  +            
Sbjct: 156 AGILIDIARRNRANSIAELYLS 177


>gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735]
 gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735]
          Length = 284

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 45/186 (24%), Gaps = 36/186 (19%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F + D ET               VRV+     ++          DD         + 
Sbjct: 3   KHTFTVIDIET--MTPERTSACALGLVRVEND-VIVQKFYSLIKPIPDDRTVT--NTHVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP+          E    I  + S     ++  +N  FD    + +            
Sbjct: 58  GITPEMVENAP-TFQELWPTIEHYIS---GQVLAAHNTSFDLDVLKKVSAHYGITIPITG 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             +  S                            T   L +      ++    HDA  D 
Sbjct: 114 VVDTFS---------------------------LTHLSLDETCKVLHVDLGKHHDALCDA 146

Query: 182 YATLAL 187
            A   +
Sbjct: 147 TACAEI 152


>gi|212211731|ref|YP_002302667.1| ribonuclease T [Coxiella burnetii CbuG_Q212]
 gi|212010141|gb|ACJ17522.1| ribonuclease T [Coxiella burnetii CbuG_Q212]
          Length = 221

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   +   + A V V+   E              P +    DP ++ IT 
Sbjct: 21  VVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEITR 80

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E +  + +  F             ++  +N  FD  + +    R    
Sbjct: 81  IDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKLK 140

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                     A     +   AH 
Sbjct: 141 KSPFHAFTCFDTATLAAIVFGKTVLAKALR-----------------AANLPFDKKEAHS 183

Query: 177 AKADVYATLALVWLIREK 194
           A  D      L   I  +
Sbjct: 184 AIYDAKCAAELFCKITNQ 201


>gi|94500535|ref|ZP_01307066.1| oligoribonuclease [Oceanobacter sp. RED65]
 gi|94427325|gb|EAT12304.1| oligoribonuclease [Oceanobacter sp. RED65]
          Length = 185

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            ++ +  D E  G + A DR  + A +  D +   +    V      D  +   D     
Sbjct: 9   KHNLIWIDLEMTGLEPAQDRIIEIATIVTDSELNVLAEGPVLAIHQPDSLMNNMDEWNTR 68

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   ++     + E E  ++   F           +  N++  D  +         
Sbjct: 69  THGNSGLTKRVKESDIDEQEAVKQTIAFLQQYVGKGVSPMCGNSVHQDRRFLNKYMPELE 128

Query: 115 YDSYRW 120
              +  
Sbjct: 129 DFFHYR 134


>gi|62263510|gb|AAX78167.1| unknown protein [synthetic construct]
          Length = 213

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           ++ +  D E  G DV   +  + A +  D+    I   E       D+ L   +   +  
Sbjct: 31  DNLIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKT 90

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+T Q+     +      ++I +F        +  +  N+I  D  +     Y   
Sbjct: 91  HTETGLT-QRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFL--AKYMPN 147

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
            D Y        +   LL+                + DD   S
Sbjct: 148 IDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDDIRES 190


>gi|120599226|ref|YP_963800.1| ribonuclease T [Shewanella sp. W3-18-1]
 gi|166200022|sp|A1RKQ1|RNT_SHESW RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|120559319|gb|ABM25246.1| RNAse T [Shewanella sp. W3-18-1]
 gi|319426004|gb|ADV54078.1| ribonuclease T [Shewanella putrefaciens 200]
          Length = 223

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 64/217 (29%), Gaps = 26/217 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D +    I+ T  F  +P +    +P A+   G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDDEGMLGIDKTLHFHIEPFEGANLEPAALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIH------QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I       Q  +  + CII  +N  FD  +      R    
Sbjct: 80  IDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +       +   +      D                    AH 
Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACMMAGIPFDNK-----------------EAHS 182

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
           A  D   T  L   I  +  +L  +            
Sbjct: 183 ALYDTERTAELFCYIVNRWKQLGGWPLLAAGAQDAES 219


>gi|119897809|ref|YP_933022.1| oligoribonuclease [Azoarcus sp. BH72]
 gi|166215750|sp|A1K5N0|ORN_AZOSB RecName: Full=Oligoribonuclease
 gi|119670222|emb|CAL94135.1| oligoribonuclease [Azoarcus sp. BH72]
          Length = 182

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 7/111 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            NH +  D E  G +   DR  + A V  D Q   I    V      +  L   D     
Sbjct: 5   PNHLIWLDMEMTGLEPDRDRIIEIALVITDSQLNTIAEAPVIAVHQPESVLDAMDDWNKN 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYY 105
             G +    +     V EAE   R+  F        T  +  N+I  D  +
Sbjct: 65  THGKSGLIDRVRASTVSEAEAEARMLAFLQEWVPARTSPMCGNSICQDRRF 115


>gi|90578520|ref|ZP_01234331.1| hypothetical protein VAS14_15754 [Vibrio angustum S14]
 gi|90441606|gb|EAS66786.1| hypothetical protein VAS14_15754 [Vibrio angustum S14]
          Length = 186

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 8/126 (6%)

Query: 3   NHFVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           +  V +D E      GR        +     +D    KI      + +PA D +  P   
Sbjct: 4   DRIVCFDLEMCCWNDGRTSRTGEIIEIGVAELDLNTGKIVRRAQHYVRPAKDEI-SPFCT 62

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI P+   ++G   +   + I Q F   +     +     DD   +           
Sbjct: 63  ELTGIKPEVVEKNGKPLSVILKSIEQKFGGRHKIYAAW---GHDDRILKKECLAKELKVP 119

Query: 119 RWSWDN 124
              + N
Sbjct: 120 FREYLN 125


>gi|83720885|ref|YP_442207.1| oligoribonuclease [Burkholderia thailandensis E264]
 gi|83654710|gb|ABC38773.1| oligoribonuclease [Burkholderia thailandensis E264]
          Length = 229

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 19/130 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDP 55
           + V  D E  G +   DR  + A V  +   +         I  ++    K  D      
Sbjct: 47  NLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNK--- 103

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110
                 G +    +     V EA+ + +I  F      P    +  N+I  D  +     
Sbjct: 104 ---NTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWM 160

Query: 111 YRNFYDSYRW 120
                  +  
Sbjct: 161 PELERFFHYR 170


>gi|331005310|ref|ZP_08328699.1| Oligoribonuclease [gamma proteobacterium IMCC1989]
 gi|330420886|gb|EGG95163.1| Oligoribonuclease [gamma proteobacterium IMCC1989]
          Length = 180

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           ++ +  D E  G     D   + A +  D     +    +     +D+ L   D      
Sbjct: 5   DNLIWIDLEMTGLYPNDDVIIEIATIVTDSDLNILAEGPMLAIHQSDERLAAMDEWNTNQ 64

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   ++     +  ++  ++   F           +  N+I  D  +  N       
Sbjct: 65  HGKSGLTERVRNSNISASDAEQQTIDFLKQWVPAGKSPMSGNSICQDRRFLANYMPALEN 124

Query: 116 DSYRW 120
             +  
Sbjct: 125 YFHYR 129


>gi|310767851|gb|ADP12801.1| exodeoxyribonuclease X [Erwinia sp. Ejp617]
          Length = 221

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 49/190 (25%), Gaps = 38/190 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G         + A V V    + +            D     +A+ +  IT
Sbjct: 2   FRVIDTETCGL---QGGVVEVASVDV-INGQILNPMSDLIS---PDRPISRQAMAVHKIT 54

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    +E +   R H       +     +N  FD                      
Sbjct: 55  EAMVRGKPAIE-QAIGRYH------GSPFYVAHNASFDRRM------------------L 89

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +  M            WP       + +       +    ++AH A  D Y T
Sbjct: 90  PEMHGDWICTMTLARRL------WPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVT 143

Query: 185 LALVWLIREK 194
            AL+  I   
Sbjct: 144 AALLMRIMSF 153


>gi|307324588|ref|ZP_07603795.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306889832|gb|EFN20811.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 202

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 56/206 (27%), Gaps = 45/206 (21%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  +A D   + A +  D +            +P  + L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLANDALIEVAALVTDSELNIQGEGVDIVVRPPAEALVTMPEVVR 60

Query: 60  -IT-----------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
            +            G T + A        +    I +         +  N++  D  +  
Sbjct: 61  DMHTTSGLLAELEGGTTLEDAQD------QVLAYIRKHVPEAGKAPLCGNSVGTDRGF-- 112

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
                   D             D+  +      + P                    A  N
Sbjct: 113 -----LLRDMPTLESYLHYRIVDVSSIKELARRWYPR-------------------AYFN 148

Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
             +    H A AD++ ++A +   RE
Sbjct: 149 SPKKNGNHRALADIHESIAELRYYRE 174


>gi|218885422|ref|YP_002434743.1| exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218756376|gb|ACL07275.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 267

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 65/215 (30%), Gaps = 37/215 (17%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D E  G + A D       V +     +++ +  F           PE V + GI 
Sbjct: 25  FVSLDCEMTGLNPARDDLLAVGAVVLR--GMRLDLSATFRGLLRPACPVRPEGVPVHGIL 82

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR-----------FDDYYSRNIFYRN 113
           P +A       A+ + R+  + +         N               D+ +      R 
Sbjct: 83  PGEAAHGDEAAAQLA-RLDAWLAGCAAVPGAGNGAEAPVVLLGWCLGLDEAFLAAGRKRA 141

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAF-----SPDGIQWPSRDDGATSFK--------- 159
                       + R D+LD+ R + A      S  G   PS      S           
Sbjct: 142 GLP------ARTHPRCDVLDLFRHVRARGVAAPSGQGAMPPSGASPLPSTHAALADIPLK 195

Query: 160 ---LQDLALANGIEHVNAHDAKADVYATLALVWLI 191
              L  +A A G++   AHDA  D      +   +
Sbjct: 196 DADLYAVARALGVDVHGAHDALGDACMCAQVFQRL 230


>gi|313201249|ref|YP_004039907.1| exonuclease rnase t and DNA polymerase III [Methylovorus sp. MP688]
 gi|312440565|gb|ADQ84671.1| Exonuclease RNase T and DNA polymerase III [Methylovorus sp. MP688]
          Length = 182

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
            N+ +  D E  G     DR  + A V  D     +  + V     +D  L   +A    
Sbjct: 5   QNNLIWLDMEMSGLLPDSDRILELAAVVTDADLNILGESPVLVVHQSDAVLDGMDAWNKG 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    K     + E   S+++ +F           +  N+I  D  +         
Sbjct: 65  THGKSGLIDKVKASTLDEVSASQQMIEFLKQFVPAGKSPMCGNSICQDRRFMARYMPELE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 SYFHYR 130


>gi|269986750|gb|EEZ93030.1| Exonuclease RNase T and DNA polymerase III [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 199

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 10/132 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           ++ D ET G             V     +   E      C+   D     EA+ + G   
Sbjct: 2   IVVDIETSGTSPYNHSILSIGAV----DFSNPERQFYQECQIEKDKEYTEEALNVNGFKK 57

Query: 66  QKALR-DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           ++                  +        IG +N+ FD  +    F +     Y  ++  
Sbjct: 58  EELTDPKKKTLESVLNEFIVWIQPVKDKTIGGHNVNFDANFLNYSFKK-----YNINFSF 112

Query: 125 GNSRWDLLDVMR 136
           G+   D   ++ 
Sbjct: 113 GHRVIDTHSLVY 124


>gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 309

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  + IE       KP +     P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGKIIEEVHHLI-KPKEMRFM-PINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+    + +   +   +I  +F+     ++  +N  FD         RN  + Y     
Sbjct: 57  RPRMVQDE-LEFDKVWEKIKHYFNEN---LVIAHNASFDISVL-----RNTLELYNIE-- 105

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  +  M+    F  +              +L  +    G E    HDA AD  A
Sbjct: 106 --MPSFQYICTMKLSKNFYSNLDN----------ARLNTVNNFLGYEF-KHHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CGNIL 157


>gi|78047167|ref|YP_363342.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325925832|ref|ZP_08187202.1| RNAse T [Xanthomonas perforans 91-118]
 gi|123585431|sp|Q3BV71|RNT_XANC5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|78035597|emb|CAJ23268.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325543767|gb|EGD15180.1| RNAse T [Xanthomonas perforans 91-118]
          Length = 213

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 58/211 (27%), Gaps = 39/211 (18%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWE-KIESTEVFFCKPADDYL 52
           M+  F     V+ D ET G D       + A V +  D         T      PA    
Sbjct: 18  MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMDTDGRFFPGETASAHLVPAPGLE 77

Query: 53  PDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRFD 102
            DP+++ ITGI     L      A+            +            I+  +N  FD
Sbjct: 78  IDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFD 133

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
             +      R  +    +      S +D + +    Y              G T      
Sbjct: 134 LNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARAA 176

Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIRE 193
            A        +AH A  D   T  L   I  
Sbjct: 177 QAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207


>gi|307327138|ref|ZP_07606327.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
 gi|306887219|gb|EFN18216.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           violaceusniger Tu 4113]
          Length = 202

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 59/207 (28%), Gaps = 32/207 (15%)

Query: 2   TNHFVIYDYE--TFGRDVALD--------RPAQFAGVRVDRQ-----WEKIESTEVFFCK 46
            + FV++D E  T+   +  D           Q   +R+        +  +E  E     
Sbjct: 1   MSMFVVFDLEFTTWSGALEQDWSEPGQLREIVQIGALRISTDSSVDAYSVVEEYEALVRP 60

Query: 47  PADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
             +  L  P    +TGI  Q   R+GV  AE       F       ++ Y N       +
Sbjct: 61  VVNPRL-SPFFTDLTGIDQQTVDREGVAPAEALSDFLAFCR--GQSVLSYGNDMVVLGEN 117

Query: 107 RNIFYRNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
                    +        G       L+ +  I A +  G  W + +             
Sbjct: 118 VGWARARGEEIKNGFLTAGFLNIRPWLNTVAPITASANSGRLWEALNLPKPV-------- 169

Query: 166 ANGIEHVNAHDAKADVYATLALVWLIR 192
                    H A  D Y+  A +  + 
Sbjct: 170 -----AGREHSALFDCYSIAAAIRHVF 191


>gi|220904848|ref|YP_002480160.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869147|gb|ACL49482.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 176

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 45/187 (24%), Gaps = 31/187 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET G   A          R+       E        P+   L       I G+T 
Sbjct: 10  VAIDFETSG--YAAHSACAVGLARI-EDGRVTEQFYSLVRPPSSRVLF----TEIHGLTW 62

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  V   +   ++  F       ++  +N  FD                       
Sbjct: 63  PMLKNAPV-FGDVWPQMESFMKGAG--VLLAHNASFDRRVLLACCREAG----------- 108

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                               ++   R     S KL  +    GI   + H   +D  A  
Sbjct: 109 ---------AGVPEQHFLCTLKGARRSLPLPSKKLNHVCEHFGIALEHHHAG-SDAAACA 158

Query: 186 ALVWLIR 192
            +   +R
Sbjct: 159 EVYLHLR 165


>gi|146422161|ref|XP_001487022.1| hypothetical protein PGUG_00399 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146388143|gb|EDK36301.1| hypothetical protein PGUG_00399 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 288

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 69/230 (30%), Gaps = 50/230 (21%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---------TEVFFCKPADDYLP 53
              V  D E  G +V  D   +   +  D     I+S          +       +  + 
Sbjct: 78  KPLVWIDCEMTGLNVYEDHIIEICCIITDGHMNIIDSQGYESTIYYPKEVLDSMNEWCVD 137

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110
                   G+T +          +    + ++      PN  I+  N+I  D ++    F
Sbjct: 138 QHGKS---GLTAKVLENTDRTLEKVQDELLEYIKRFVEPNKGIMAGNSIHMDKFFMNREF 194

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
            R     +           D+  +M   +  +P+ ++   + D                 
Sbjct: 195 PRVIDYLHYR-------LIDVSTIMEIGHRHNPELMKLFPKKD----------------- 230

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
               H AK+D+  ++A +          +   +  ++K+ ++  I+    
Sbjct: 231 --GNHTAKSDILESIAQLK---------WYKKHYLKSKDDVKDFINENKP 269


>gi|21672469|ref|NP_660536.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|25009131|sp|Q8K9V5|RNT_BUCAP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21623085|gb|AAM67747.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)]
          Length = 219

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D+      E    F  KP    + + +A+    
Sbjct: 20  VVIDIETAGFNPKTDAVLEIALITLKMDKLGWLHKEDILHFHIKPFKGSIINSDAIAFNK 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTC------IIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  + E      I +  +           I+  +N  FD  +      R    
Sbjct: 80  IDPFNPLRGAISETLAIESILEKVNYGIKIQGCTRGIVVAHNAHFDHNFLMAAIQRVKIK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +  +          L  +       +                     A+    ++  AH 
Sbjct: 140 NNPFHPFVTFDTAALSGLAVGQTVLAKACK-----------------AIGLSFDNNQAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDSLQTANLFCKIVNR 200


>gi|315634034|ref|ZP_07889323.1| oligoribonuclease [Aggregatibacter segnis ATCC 33393]
 gi|315477284|gb|EFU68027.1| oligoribonuclease [Aggregatibacter segnis ATCC 33393]
          Length = 182

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +          ++    K +D  + 
Sbjct: 5   KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAIHQSDELLNKMSDWCVK 64

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110
              A    G+  ++     + E     +   F           I  N++  D  +     
Sbjct: 65  THTA---NGL-VERVKNSKLTERAAELQTLDFLKKYVPKGVSPICGNSVAQDKRFLFKYM 120

Query: 111 YRNFYDSYRWS 121
                  +   
Sbjct: 121 PELADYFHYRH 131


>gi|50913902|ref|YP_059874.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS10394]
 gi|139474153|ref|YP_001128869.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes str. Manfredo]
 gi|50902976|gb|AAT86691.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS10394]
 gi|134272400|emb|CAM30656.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str.
           Manfredo]
          Length = 833

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +       
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              ++    R D +++ +  +                  + L  L+    I+   AH A 
Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           AD  AT  L   + +K   L     +
Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193


>gi|15674717|ref|NP_268891.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes M1 GAS]
 gi|13621839|gb|AAK33612.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS]
          Length = 833

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +       
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              ++    R D +++ +  +                  + L  L+    I+   AH A 
Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           AD  AT  L   + +K   L     +
Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193


>gi|94993950|ref|YP_602048.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS10750]
 gi|94547458|gb|ABF37504.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS10750]
          Length = 833

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +       
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              ++    R D +++ +  +                  + L  L+    I+   AH A 
Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLGHLSRQLNIDLAEAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           AD  AT  L   + +K   L     +
Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193


>gi|21909995|ref|NP_664263.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS315]
 gi|28896308|ref|NP_802658.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes SSI-1]
 gi|21904184|gb|AAM79066.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28811559|dbj|BAC64491.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1]
          Length = 833

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +       
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              ++    R D +++ +  +                  + L  L+    I+   AH A 
Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           AD  AT  L   + +K   L     +
Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193


>gi|328873520|gb|EGG21887.1| nucleotide binding protein 1-like protein [Dictyostelium
           fasciculatum]
          Length = 879

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 15/119 (12%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD--------DYLPD 54
           N  +  D E  G D+  DR  + A +  D   + IE+         D             
Sbjct: 102 NRLIWVDLEMTGLDITKDRIMEIACIVTDDNLQVIEAGPDLCVYIDDAALDGMGKWCKEH 161

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
                +T    Q+     +   E  + + +F +       C +  N +  D  +     
Sbjct: 162 HGDSGLT----QRCRESKISIQEAEKIMVEFLAKHVHKGMCPLAGNTVHEDKKFLLKEM 216


>gi|289663085|ref|ZP_06484666.1| ribonuclease T [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 211

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 60/212 (28%), Gaps = 41/212 (19%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDY 51
           M+  F     V+ D ET G D       + A V ++      +   ++       PA   
Sbjct: 16  MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLV-PAPGL 74

Query: 52  LPDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRF 101
             DP+++ ITGI     L      A+            +            I+  +N  F
Sbjct: 75  EIDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHF 130

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D  +      R  +    +      S +D + +    Y              G T     
Sbjct: 131 DLNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARA 173

Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIRE 193
             A        +AH A  D   T  L   I  
Sbjct: 174 AQAAGLDWNTADAHSAVYDTEQTARLFCTIAN 205


>gi|166712351|ref|ZP_02243558.1| oligoribonuclease [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 194

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 42/205 (20%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV-- 58
           ++  +  D E  G D   D   + A +  D Q   +    E+    P +      EA+  
Sbjct: 8   SDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDE 63

Query: 59  ---FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
                   +   Q+ L   V  A+   +   F           +  N+I  D  +     
Sbjct: 64  WNRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQM 123

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
            R     +           D+  +      ++P                      ANG  
Sbjct: 124 SRLERYFHYR-------NLDVSTIKELARRWAPTL--------------------ANGFA 156

Query: 171 HVNAHDAKADVYATLALVWLIREKK 195
             +AH A +DV  ++  +   R+  
Sbjct: 157 KSSAHTALSDVRDSIDELRHYRQFM 181


>gi|71903180|ref|YP_279983.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS6180]
 gi|71802275|gb|AAX71628.1| ATP-dependent helicase [Streptococcus pyogenes MGAS6180]
          Length = 833

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +       
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              ++    R D +++ +  +                  + L  L+    I+   AH A 
Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           AD  AT  L   + +K   L     +
Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193


>gi|21230975|ref|NP_636892.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769021|ref|YP_243783.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992135|ref|YP_001904145.1| ribonuclease T [Xanthomonas campestris pv. campestris str. B100]
 gi|24638163|sp|Q8PAG3|RNT_XANCP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|81305015|sp|Q4UT60|RNT_XANC8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21112595|gb|AAM40816.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574353|gb|AAY49763.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733895|emb|CAP52101.1| Ribonuclease T [Xanthomonas campestris pv. campestris]
          Length = 216

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 59/211 (27%), Gaps = 39/211 (18%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYL 52
           M+  F     V+ D ET G D       + A V ++   +       T      PA    
Sbjct: 18  MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMDAQGHFFPGETASAHLVPAPGLE 77

Query: 53  PDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRFD 102
            DP+++ ITGI     L      A+            +            I+  +N  FD
Sbjct: 78  IDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFD 133

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
             +      R  +    +      S +D + +    Y              G T      
Sbjct: 134 LNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARAA 176

Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIRE 193
            A        +AH A  D   T  L   I  
Sbjct: 177 QAAGLDWNSADAHSAVYDTEQTARLFCKIAN 207


>gi|127511493|ref|YP_001092690.1| oligoribonuclease [Shewanella loihica PV-4]
 gi|166216587|sp|A3QAD3|ORN_SHELP RecName: Full=Oligoribonuclease
 gi|126636788|gb|ABO22431.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica
           PV-4]
          Length = 181

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + +  D E  G +  +DR  + A +  D++   +    V     ++D L   D       
Sbjct: 7   NLIWVDLEMTGLEPEVDRIIEIATIVTDKELNILAEGPVIAIHQSEDVLAAMDDWNQKHH 66

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +    +       E +   +   F S         +  N+I  D  +           
Sbjct: 67  GESGLIDRVRASDFSEQDAIEQTIAFLSEHVPAGVSPMCGNSIGQDRRFLNRYMPTLEDY 126

Query: 117 SYRW 120
            +  
Sbjct: 127 FHYR 130


>gi|254707409|ref|ZP_05169237.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|261314895|ref|ZP_05954092.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|261303921|gb|EEY07418.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
          Length = 201

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 46/169 (27%), Gaps = 26/169 (15%)

Query: 42  VFFCKPAD-DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100
            F            P+A+ + GI+ ++ L   V  AE      +F    +   +  +N  
Sbjct: 4   TFHKFINPQGRQVHPDALAVHGISNEQLLDKPV-FAEILDEFLEFI---DGARLVAHNAM 59

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           FD  +      R                 D L + R  +   P+               L
Sbjct: 60  FDLGFINAELARLDQAEITSEH-----IVDTLALARRKHPMGPN--------------SL 100

Query: 161 QDLALANGIE--HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
             L    GI+  H   H A  D      +   +   K        +  +
Sbjct: 101 DALCKRYGIDNSHRTLHGALLDAQILAEVYIELIGGKQTALGLTMESGS 149


>gi|209559092|ref|YP_002285564.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes NZ131]
 gi|209540293|gb|ACI60869.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus pyogenes NZ131]
          Length = 833

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +       
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              ++    R D +++ +  +                  + L  L+    I+   AH A 
Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLGHLSRQLNIDLAEAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           AD  AT  L   + +K   L     +
Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193


>gi|206579385|ref|YP_002240881.1| oligoribonuclease [Klebsiella pneumoniae 342]
 gi|288937537|ref|YP_003441596.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola
           At-22]
 gi|206568443|gb|ACI10219.1| oligoribonuclease [Klebsiella pneumoniae 342]
 gi|288892246|gb|ADC60564.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola
           At-22]
          Length = 181

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G D   DR  + A +  D     +          +D    L D   V  
Sbjct: 6   NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDEWNVRT 65

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+   +     V E +      +F           I  N+I  D  +      +  
Sbjct: 66  HTGSGL-VDRVKASAVSEHDAELATIEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPQLE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 AYFHYR 130


>gi|295098321|emb|CBK87411.1| Oligoribonuclease (3'->5' exoribonuclease) [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 181

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G D   DR  + A +  D     +          +DD   L D   V  
Sbjct: 6   NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDDQLALMDEWNVRT 65

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+  ++     + + E      +F           I  N+I  D  +         
Sbjct: 66  HTGSGL-VERVKASSLGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 SYFHYR 130


>gi|149179899|ref|ZP_01858404.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1]
 gi|148852091|gb|EDL66236.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1]
          Length = 245

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 27/202 (13%)

Query: 4   HFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F I+D ET G      D       +++  Q  KI   + F+           E    TG
Sbjct: 62  TFTIFDLETTGFFPEIGDEIVSIGAIKM--QGNKILDQKTFYEVINPLQNVSLETKRFTG 119

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +     ++   +       +  F       I+  +   FD  + +    +    S+   +
Sbjct: 120 LRRTDFIKAKTLPV----GLKDFLEFCKGTILVAHPASFDINFLQKRIRKWDLPSFEPEY 175

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +  +    L   +  Y                    L DL     I     H A  D  
Sbjct: 176 IDSYALAKELLNEQKCY--------------------LDDLVKKFQISEKTRHHALNDAI 215

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
            T  +   +     +       
Sbjct: 216 MTAEVFQELLILCKEKKVETIS 237


>gi|58000402|ref|YP_190104.1| YacC [Escherichia coli]
 gi|219586145|ref|YP_002456239.1| YacC [Escherichia coli]
 gi|57903302|gb|AAW58931.1| YacC [Escherichia coli]
 gi|218931728|gb|ACL12501.1| YacC [Escherichia coli]
 gi|323958954|gb|EGB54627.1| exonuclease [Escherichia coli H489]
          Length = 282

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 50/191 (26%), Gaps = 26/191 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F            +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETWLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
            + +  +++    Y             +   +  L   A   G      AH A AD    
Sbjct: 210 LTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGQAHSAIADARMA 259

Query: 185 LALVWLIREKK 195
             +V  I    
Sbjct: 260 AGVVNAIAAYH 270


>gi|148227894|ref|NP_001089039.1| ERI1 exoribonuclease 2 [Xenopus laevis]
 gi|82179168|sp|Q5HZL1|ERI2_XENLA RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
           domain-containing protein 1
 gi|57032602|gb|AAH88972.1| Exod1 protein [Xenopus laevis]
          Length = 687

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 57/200 (28%), Gaps = 21/200 (10%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59
            +I D+E+     G+        +F  V ++    E        + +P +  +       
Sbjct: 38  LIIIDFESTCWKDGKHSTQ-EIIEFPAVLLNVSNGEIESEFHT-YVQPQEHPILSDFCTE 95

Query: 60  ITGITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF-----Y 111
           +TGI  Q+        +  ++F+  I +         +          +    F     +
Sbjct: 96  LTGINQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCAFVTWSDW 155

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                           + D+L+    + A       + +R     +  LQDL +      
Sbjct: 156 DLGVCLLYECRRKQMKKPDILNSWIDLRATYK---LFYNRRPKGLNGALQDLGIEFS--- 209

Query: 172 VNAHDAKADVYATLALVWLI 191
              H    D   T  L   +
Sbjct: 210 GREHSGLDDSRNTAKLASRM 229


>gi|242035185|ref|XP_002464987.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
 gi|241918841|gb|EER91985.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
          Length = 435

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 56/189 (29%), Gaps = 27/189 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADD-YLPDPEAVFITG 62
            V  D ET      +    +F  V V  R+   + S          D  +PDP A   +G
Sbjct: 20  IVFLDVETS-TPPRV--LLEFGAVVVCSRRLVDVSSYATLVRPADPDAAVPDPTA-RCSG 75

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT            + + +++           G+N ++FD    R+ F            
Sbjct: 76  ITRDAVADAP-PFRDVADKVYDVL--HGRVWAGHNIVKFDSVIIRDAFAEIGRPPPE--- 129

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D L ++                   A   KL  LA   G+     H +  DV 
Sbjct: 130 --PKGMVDTLPLL------------TQWFGPRAGDMKLASLANYFGLG-KQRHRSLDDVK 174

Query: 183 ATLALVWLI 191
             + ++   
Sbjct: 175 MNIDVLKNC 183


>gi|149912028|ref|ZP_01900621.1| ribonuclease T [Moritella sp. PE36]
 gi|149804889|gb|EDM64924.1| ribonuclease T [Moritella sp. PE36]
          Length = 231

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 62/208 (29%), Gaps = 26/208 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   + +D      I  T  F  +P +    +  A+  TG
Sbjct: 19  VVIDIETAGFNAQTDAMLEIAASILEMDEDGYLKISHTLHFNVEPFEGANLEQAALDFTG 78

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I++           +  I+  +N  FD  +      R    
Sbjct: 79  IDPTNPLRGAVPEREAITEIYKAVRKGLKDTGCHRAIMVAHNAAFDHAFLSAASNREKIK 138

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +       +                    +A     +H  AH 
Sbjct: 139 RNPFHPFATFDTTTLAGLAVGQTVLAKAC-----------------VAAGIPFDHKQAHS 181

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYD 204
           AK D   T  L   I  K   +  +   
Sbjct: 182 AKYDTEQTAELFCYIVNKWKDMGGWPLA 209


>gi|330998364|ref|ZP_08322188.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
 gi|329568470|gb|EGG50275.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
          Length = 164

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 53/190 (27%), Gaps = 27/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            N F   D+ET   +           V V R  E          +P  +Y  +     + 
Sbjct: 1   MNDFAAIDFET--ANGQRSSICSVGLVVV-RNREITIRHY-RLVRPYPNY-YNYWNTQVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ Q          E  R I           +  +N  FD+   +  F     +     
Sbjct: 56  GLSFQDTAHA-APFPEVWREIIPLIE---GLPLVAHNRPFDEGCLKAAFQAYGME----- 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +     +RA                   + +LQ +AL  G +    H A AD 
Sbjct: 107 ----YPGYPFHCTLRASRLAF---------GRDLPNHQLQTVALRCGYDLTQHHHALADA 153

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 154 EACARIALKI 163


>gi|94990039|ref|YP_598139.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS10270]
 gi|94543547|gb|ABF33595.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS10270]
          Length = 833

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +       
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              ++    R D +++ +  +                  + L  L+    I+   AH A 
Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           AD  AT  L   + +K   L     +
Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193


>gi|86147892|ref|ZP_01066197.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|218710857|ref|YP_002418478.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32]
 gi|85834319|gb|EAQ52472.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|218323876|emb|CAV20237.1| putative DNA polymerase III, epsilon subunit [Vibrio splendidus
           LGP32]
          Length = 210

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 52/201 (25%), Gaps = 21/201 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET   D         A  ++            F  +       D  ++ I  I 
Sbjct: 30  YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSQP--FEVRLRAPQSLDCNSIKIHRIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q   + G+ E +    +  F    N  ++GY+         R    +  +       + 
Sbjct: 88  HQDL-KHGIEEKQALIELLNFI--GNRPLVGYHIRYDKKILDRACLKQLGFPLPNRLVEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADVYA 183
                D L+       F                  +  +     +    N HDA  D  +
Sbjct: 145 SQLYQDKLERQLPNAYF---------------DLSMDAICRQLDLPIPVNKHDALQDAIS 189

Query: 184 TLALVWLIREKKPKLFEYLYD 204
              +   ++      F   Y 
Sbjct: 190 AALIFVRLKHGDLPRFNSSYS 210


>gi|262045407|ref|ZP_06018430.1| oligoribonuclease [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330003307|ref|ZP_08304578.1| oligoribonuclease [Klebsiella sp. MS 92-3]
 gi|259037236|gb|EEW38484.1| oligoribonuclease [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537018|gb|EGF63306.1| oligoribonuclease [Klebsiella sp. MS 92-3]
          Length = 181

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G D   DR  + A +  D     +          +D    L D   V  
Sbjct: 6   NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDEWNVRT 65

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+   +     V E +      +F           I  N+I  D  +      +  
Sbjct: 66  HTGSGL-VDRVKASTVSEHDAELATIEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPQLE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 AYFHYR 130


>gi|237715092|ref|ZP_04545573.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408959|ref|ZP_06085504.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643917|ref|ZP_06721705.1| exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294809982|ref|ZP_06768656.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|298481822|ref|ZP_07000012.1| exonuclease [Bacteroides sp. D22]
 gi|229444925|gb|EEO50716.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353170|gb|EEZ02265.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640767|gb|EFF58997.1| exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294442828|gb|EFG11621.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|295087790|emb|CBK69313.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Bacteroides xylanisolvens XB1A]
 gi|298272044|gb|EFI13615.1| exonuclease [Bacteroides sp. D22]
          Length = 198

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 27/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V +  + +        +PA +Y        I 
Sbjct: 1   MRNFAAIDFET--ANGKRTSVCSVGVVIV-KDGKIVNKIY-RLIRPAPNY-YTQWTTAIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T    +       +    I       +   +  +N  FD+        R  ++ Y  +
Sbjct: 56  GLTYDDTMEA-EDFPDVWAEIKPLI---DGLPLVAHNSPFDE-----GCLRAVHELYDMT 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + N    +      R                    + +L  +A   G    N H A AD 
Sbjct: 107 YPN----YKFYCTCRTSRKVF---------GKDLPNHQLHTVAERCGYNLENHHHALADA 153

Query: 182 YATLALV 188
            A   + 
Sbjct: 154 EACAQIA 160


>gi|119715587|ref|YP_922552.1| oligoribonuclease [Nocardioides sp. JS614]
 gi|119536248|gb|ABL80865.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
          Length = 222

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 19/118 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-F 59
           M    V  D E  G D+  D   + A +  D     + S      K      P  EA+  
Sbjct: 1   MNERLVWIDCEMTGLDLRADALIEVAALVTDFDLNVLGSGVDLIVK------PPAEALDQ 54

Query: 60  ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
           +         + G+             E +    + +F    +   +  N +  D  +
Sbjct: 55  MNEFVRDMHEKSGLLRELDSGISLDEAEEQVLAYVKEFCPDGSRPPLAGNTVATDRAF 112


>gi|254360517|ref|ZP_04976666.1| exoribonuclease II [Mannheimia haemolytica PHL213]
 gi|261492357|ref|ZP_05988919.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496143|ref|ZP_05992551.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153091057|gb|EDN73062.1| exoribonuclease II [Mannheimia haemolytica PHL213]
 gi|261308245|gb|EEY09540.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312040|gb|EEY13181.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 184

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 15/130 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D   +R  + A +  D+    +          T+    K +D  +  
Sbjct: 6   QNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLAVHQTDDLLEKMSDWCVKT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A    G+  ++     + E     +   F           I  N+I  D  +      
Sbjct: 66  HTA---NGL-IERVKASKLTERAAELQTLDFLKRWVPKGASPICGNSIAQDKRFLYKYMP 121

Query: 112 RNFYDSYRWS 121
                 +   
Sbjct: 122 DLADYFHYRH 131


>gi|332523967|ref|ZP_08400219.1| putative DNA polymerase III, epsilon subunit [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332315231|gb|EGJ28216.1| putative DNA polymerase III, epsilon subunit [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 195

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 34/204 (16%)

Query: 1   MTN--HFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M    +++ +D E    +   D     Q + V++    E+I+S + F      D      
Sbjct: 1   MKKLTNYIAFDLE---FNTVKDVSHLIQLSAVKM-ANHEEIDSFDSF---VYTDVPLQSF 53

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TGIT  K  +   +  +       F       +IGYN+ + D          N  D
Sbjct: 54  INGLTGITADKIAKAPKIN-QVLEEFKAFVGDC--ALIGYNSEKSDLPILA----DNGLD 106

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  +     DL D      +   +GI         T+ KL  +A   GI+    H+
Sbjct: 107 ------LSEQYTVDLYDEAFERRSSDLNGI---------TNLKLTTVASFLGIK-GKGHN 150

Query: 177 AKADVYATLALVWLIREKKPKLFE 200
           +  D   T  +     E       
Sbjct: 151 SLEDARMTARVYEAFLELDDNKNY 174


>gi|239979599|ref|ZP_04702123.1| oligoribonuclease [Streptomyces albus J1074]
 gi|291451465|ref|ZP_06590855.1| oligoribonuclease [Streptomyces albus J1074]
 gi|291354414|gb|EFE81316.1| oligoribonuclease [Streptomyces albus J1074]
          Length = 200

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  +A D   + A +  D +   +        +P D+ L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGDGVDIVIRPPDEALETMPEVVR 60

Query: 60  ITGITPQKALR--DGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
               +        +G      EA+    + +    P    +  N++  D  +        
Sbjct: 61  KMHTSSGLLAELAEGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRNFLARDMAAL 120

Query: 114 FYDSYRW 120
               +  
Sbjct: 121 EGYLHYR 127


>gi|238927543|ref|ZP_04659303.1| possible exonuclease [Selenomonas flueggei ATCC 43531]
 gi|238884825|gb|EEQ48463.1| possible exonuclease [Selenomonas flueggei ATCC 43531]
          Length = 219

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 29/200 (14%)

Query: 6   VIYDYETF--GRDVA------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           ++ D E    G++             +   VR++  + + +  + + C   +  +     
Sbjct: 4   IVVDLEMNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVC--PEYGMVKKHI 61

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYD 116
             +TGIT +K          F+   H F +         Y+    D    R    R    
Sbjct: 62  TELTGITQEKVAGHPA----FADSFHAFVAWIGEAETKIYSWSMSDIKQLRKEC-RLKLP 116

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
            +  +W +           R +        +    +  A    L  +         + H 
Sbjct: 117 DFDVTWLDT----------RWVDLQQEFDDRLGLHNSLALKHALGAMGRRF---EGSQHS 163

Query: 177 AKADVYATLALVWLIREKKP 196
           A AD   T A++ L+++   
Sbjct: 164 ALADAVNTSAVLALMQDDAK 183


>gi|307139287|ref|ZP_07498643.1| conserved hypothetical plasmid protein [Escherichia coli H736]
 gi|331643276|ref|ZP_08344408.1| exonuclease superfamily [Escherichia coli H736]
 gi|331037503|gb|EGI09726.1| exonuclease superfamily [Escherichia coli H736]
          Length = 282

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 51/191 (26%), Gaps = 26/191 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDAAGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q          + +R++       +  +I +N         +     +        W   
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHSD----PADWLEE 209

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYAT 184
            + +  +++    Y             +   +  L   A   G      AH A AD    
Sbjct: 210 LTVYCAMELAAGYY----------GATNRYGTISLASAASQAGLTWEGLAHSAIADARMA 259

Query: 185 LALVWLIREKK 195
             +V  I    
Sbjct: 260 AGVVNAIAAYH 270


>gi|296270642|ref|YP_003653274.1| exonuclease RNase T and DNA polymerase III [Thermobispora bispora
           DSM 43833]
 gi|296093429|gb|ADG89381.1| Exonuclease RNase T and DNA polymerase III [Thermobispora bispora
           DSM 43833]
          Length = 198

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 9/149 (6%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           MT+  V  D E  G D+  D   + A +  D +   ++       KP  + L        
Sbjct: 1   MTDPLVWIDCEMTGLDLTRDALVEVACIVTDGELNPVDEGVAVVIKPPPETLEQMSDVVR 60

Query: 59  FIT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            +    G+  + A    + EAE      I           +  N+I  D  +        
Sbjct: 61  EMHTASGLLDELAGGVTLAEAEATVLGYIRSHVPEAKKAPLCGNSIATDRAFL--ARDMP 118

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
             D+Y        S    L        + 
Sbjct: 119 LVDAYLHYRMVDVSTIKELARRWYPRVYF 147


>gi|225420339|ref|ZP_03762642.1| hypothetical protein CLOSTASPAR_06683 [Clostridium asparagiforme
           DSM 15981]
 gi|225041025|gb|EEG51271.1| hypothetical protein CLOSTASPAR_06683 [Clostridium asparagiforme
           DSM 15981]
          Length = 323

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 71/256 (27%), Gaps = 36/256 (14%)

Query: 5   FVIYDYETFGRDVA--LD-------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           +++ D E + +      D          +   V++D  + +         +P        
Sbjct: 3   YIVLDLE-WNQSPNGKEDSVEHLPFEIIEIGAVKLDEGFRQKGEFH-RLIRPQVYRQLHF 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           +   +T +   +    G    +  R   +F     T          D    +        
Sbjct: 61  KISEVTHMDMGELKHRGKNFKQVMR---EFLDWCGTEYCFCTWGSMDLTELQRNMDYFKV 117

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174
                 +      +D+  +    Y             DG     L       GI      
Sbjct: 118 P---NPFPRPLLYYDVQKLYCMEY------------GDGKNKPSLDQAVQERGIRQERPF 162

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF---- 230
           H A +D + T  ++ ++  ++ + +  +  +R      + + ++      +VS  F    
Sbjct: 163 HRALSDAFYTGRVLAVMDFEQVRPYISVDYFRLPRNKEEEVSLRFPDYAKYVSRPFENRE 222

Query: 231 --GASRSNTALIAPVA 244
                ++   ++ P  
Sbjct: 223 EAMKDKTVNDMVCPYC 238


>gi|168183921|ref|ZP_02618585.1| exonuclease family protein [Clostridium botulinum Bf]
 gi|237795808|ref|YP_002863360.1| exonuclease family protein [Clostridium botulinum Ba4 str. 657]
 gi|182672939|gb|EDT84900.1| exonuclease family protein [Clostridium botulinum Bf]
 gi|229261869|gb|ACQ52902.1| exonuclease family protein [Clostridium botulinum Ba4 str. 657]
          Length = 253

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 35/234 (14%)

Query: 4   HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           +++I+D E    +   +            Q   ++++  +  I++      KP      +
Sbjct: 2   NYIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNAL-VKPEIYSDLN 57

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P    +T +T     +      E  +   +F +     +  +      + +   ++Y   
Sbjct: 58  PFVKNLTNLTMDSLNKAN-TFREVYKDFLKFLNKDKNILCIWGMTDMKELFRNIVYYELD 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +S    + N             + A++   + +P   +   S  ++   L +  ++ + 
Sbjct: 117 TESIPKEYIN-------------VQAYTGKYLNYPKSINVGLSNAVE---LFHITKNNDF 160

Query: 175 HDAKADVYATLALVWLIREKKPKLF-----EYLYDYRNKNQLRKLIDIQNMTPL 223
           H+A  D + T  +   I  +K K            YRNKN   K+  +      
Sbjct: 161 HNAFNDAFYTAEVFKKIYSEKIKTKIYKPTNNSTTYRNKNTKTKIDTVSLFKQF 214


>gi|157145382|ref|YP_001452701.1| exodeoxyribonuclease X [Citrobacter koseri ATCC BAA-895]
 gi|157082587|gb|ABV12265.1| hypothetical protein CKO_01122 [Citrobacter koseri ATCC BAA-895]
          Length = 220

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 64/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G         + A V V      + +      +P  D    P+A+ I  I+  
Sbjct: 4   VIDTETCGL---QGGIVEIASVDV-VAGRIV-NPMSHLVRP--DRPISPQAMAIHRISES 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     H       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DIIPLYH------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLSRRL------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMVDITGRPALLTT--FTFGKYRGKAVSEVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     +    +   L  
Sbjct: 191 DPGYLRWLFNNLDNMSPELRLTLKH 215


>gi|62901864|gb|AAY18883.1| CGI-114 [synthetic construct]
          Length = 229

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 31  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 90

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 91  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 150

Query: 114 FYDSYRW 120
               +  
Sbjct: 151 MKHLHYR 157


>gi|297625330|ref|YP_003687093.1| DNA polymerase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921095|emb|CBL55640.1| DNA polymerase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 522

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 47/161 (29%), Gaps = 20/161 (12%)

Query: 5   FVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           FV  D+ET     G         Q A VRV      ++        P+     D E  ++
Sbjct: 348 FVAADFETANRSSGVSA-----CQIALVRV-ESGRVVDRFNTLLKPPSGFD--DFEFTYL 399

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN--IFY--RNFYD 116
            GI+ +          +    I  F        +  +N  FD    R    F+  R+  D
Sbjct: 400 HGISARDTRTAP-SWPDIIPAIRGF---AGDATVYAHNAPFDSRVWRQLDEFFHTRSLPD 455

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
            +  S+         LD  R           +      A S
Sbjct: 456 HFFCSYLTARRMMPGLDNYRLPTVLERCAPHFVLDHHKADS 496


>gi|296119586|ref|ZP_06838144.1| exonuclease [Corynebacterium ammoniagenes DSM 20306]
 gi|295967469|gb|EFG80736.1| exonuclease [Corynebacterium ammoniagenes DSM 20306]
          Length = 212

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 51/195 (26%), Gaps = 23/195 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63
           F+  D ET G      +      V +     ++  +  V             E+  I  +
Sbjct: 29  FLAVDMETTGLKPKQHQIVSIGWVPIKNNRVQLSGAQYVLIKGVDVG-----ESATIHHL 83

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      E    I +  +      +  +    +  +  +   + +         
Sbjct: 84  RDSDLEKG----MELEEGIDKLTADLRGKAMLAHFAPIETSFYSHACKKLWGKEPHLE-- 137

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +   +A     ++  S        +L  +    G+ +  +H+A  D  A
Sbjct: 138 -----------VVDTFALERRHMERMSTYPRGEDLRLSRVRARYGLPNYPSHNALTDAIA 186

Query: 184 TLALVWLIREKKPKL 198
              L   +   +P  
Sbjct: 187 CAELYLAMAAHRPPT 201


>gi|77460172|ref|YP_349679.1| exonuclease [Pseudomonas fluorescens Pf0-1]
 gi|77384175|gb|ABA75688.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 180

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 55/192 (28%), Gaps = 23/192 (11%)

Query: 2   TNHFVIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E T   G     +    +     VDR   + +  +  F KP    L  P  
Sbjct: 1   MPHWLVIDLEATTDEGGWPVTEMEIIEIGATLVDRAGREQDHFQ-RFVKPTRRPLLTPFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYD 116
             +T IT           +E      ++     T + G+ +   +D       + R   D
Sbjct: 60  RELTHITQANI-DAAQPLSEVWPAFERWLGQHQTRLEGWASWGDYDRKQLLQEWQRLQLD 118

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           S      + N +       R       +G                 L LA        H 
Sbjct: 119 SALSRVPHMNLKQRFAKARRLERPLGLNG----------------ALQLAGMQFTGQQHR 162

Query: 177 AKADVYATLALV 188
           A  D   T  L+
Sbjct: 163 ALEDARNTARLL 174


>gi|29654993|ref|NP_820685.1| ribonuclease T [Coxiella burnetii RSA 493]
 gi|153207536|ref|ZP_01946219.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177']
 gi|154706868|ref|YP_001423724.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111]
 gi|165918353|ref|ZP_02218439.1| ribonuclease T [Coxiella burnetii RSA 334]
 gi|212217974|ref|YP_002304761.1| ribonuclease T [Coxiella burnetii CbuK_Q154]
 gi|29542262|gb|AAO91199.1| ribonuclease T [Coxiella burnetii RSA 493]
 gi|120576504|gb|EAX33128.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177']
 gi|154356154|gb|ABS77616.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111]
 gi|165918003|gb|EDR36607.1| ribonuclease T [Coxiella burnetii RSA 334]
 gi|212012236|gb|ACJ19616.1| ribonuclease T [Coxiella burnetii CbuK_Q154]
          Length = 224

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   +   + A V V+   E              P +    DP ++ IT 
Sbjct: 21  VVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEITR 80

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  V E +  + +  F             ++  +N  FD  + +    R    
Sbjct: 81  IDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKLK 140

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  ++      +                     A     +   AH 
Sbjct: 141 KSPFHAFTCFDTATLAAIVFGKTVLAKALR-----------------AANLPFDKKEAHS 183

Query: 177 AKADVYATLALVWLIREK 194
           A  D      L   I  +
Sbjct: 184 AIYDAKCAAELFCKITNQ 201


>gi|77361037|ref|YP_340612.1| ribonuclease T [Pseudoalteromonas haloplanktis TAC125]
 gi|76875948|emb|CAI87170.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 232

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 64/200 (32%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +   D     I+ T  F  +P  D   +  A+   G
Sbjct: 19  VVIDVETGGFNKDTDALLEIAVSVLKMDDEGLLSIDHTVHFHVEPFADANIEQAAIEFNG 78

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P  ALR  V E    + I +              ++  +N  FD  +      RN   
Sbjct: 79  IDPFSALRGAVPEEHAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERN--- 135

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
           + + +  +    +D   +                         L     A GIE  N  A
Sbjct: 136 NIKRTPFHPFVSFDTTSLA----------------GLALGQTVLAKACRAAGIEFDNSQA 179

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L  LI  +
Sbjct: 180 HSALYDTERTAELYCLIVNR 199


>gi|197337117|ref|YP_002157942.1| DNA polymerase III, epsilon chain [Vibrio fischeri MJ11]
 gi|197314369|gb|ACH63818.1| DNA polymerase III, epsilon chain [Vibrio fischeri MJ11]
          Length = 259

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 29/198 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRV--------DRQWEKIESTEVFFCKPADDYLPDPE 56
           F + D+ET G +   D       V +          Q   I        +  +    D  
Sbjct: 66  FTVVDFETSGLNPKTDHIVSIGWVHIINGVIKLNSAQHHIINEPISINAE-DEGEERDHT 124

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A  +  I P++  + G+   +       FFS   + I+  +    +  +    F      
Sbjct: 125 ARSLHHILPEQ-QKMGISLEKAME---CFFSNLPSNILVVHGATIEQRFLEQFFLSLQLP 180

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +    W         LD +R              ++     F+L  L     +    AH 
Sbjct: 181 NLPMIW---------LDTLRIEQ-------NTIQQNRYQRDFRLFSLRRQYKLPDYPAHH 224

Query: 177 AKADVYATLALVWLIREK 194
           A  D  +T  L    +++
Sbjct: 225 ALVDAISTAELFLAQKKR 242


>gi|52425567|ref|YP_088704.1| oligoribonuclease [Mannheimia succiniciproducens MBEL55E]
 gi|59798011|sp|Q65SE1|ORN_MANSM RecName: Full=Oligoribonuclease
 gi|52307619|gb|AAU38119.1| Orn protein [Mannheimia succiniciproducens MBEL55E]
          Length = 186

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 15/130 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D   +R  + A +  D+    +          ++    K +D  +  
Sbjct: 6   QNLIWIDLEMTGLDPENERIIEIATIVTDKDLNILAEGPVLAVHQSDELLAKMSDWCIKT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A    G+   +     + E     +   F           I  N++  D  +      
Sbjct: 66  HSA---NGL-VDRVKASKLTERAAELQTIDFLKKWVPKGASPICGNSVAQDKRFLFKYMP 121

Query: 112 RNFYDSYRWS 121
                 +   
Sbjct: 122 ELADYFHYRH 131


>gi|317048373|ref|YP_004116021.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b]
 gi|316949990|gb|ADU69465.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b]
          Length = 222

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 56/225 (24%), Gaps = 38/225 (16%)

Query: 2   TNHFV-IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            +  + + D ET           + A V +  + +       F             A+ I
Sbjct: 1   MSTIIRVIDTETTSF---EGGICELASVDI-VEGKICNPMSDF---VKPPEPITVGAMAI 53

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             IT            +   R           +   +N  FD         R        
Sbjct: 54  HHITNDMVTDAP-PIGDVIDR------YLGADVYVAHNAAFD---------RPKLPQITA 97

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            W         +  ++      P+     ++       +   +   +  E ++AH A  D
Sbjct: 98  PW---------ICTLKLARKLYPELESHTNQY-----LRYHFMLDVDVPEGLHAHRALYD 143

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
            Y T AL+  +          + D  ++  L   +          
Sbjct: 144 CYVTAALLIRLNRDVQLTIAQMRDISSRPSLLHTMRFGKHKGKTF 188


>gi|168184675|ref|ZP_02619339.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Bf]
 gi|237795168|ref|YP_002862720.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum
           Ba4 str. 657]
 gi|182672241|gb|EDT84202.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Bf]
 gi|229261088|gb|ACQ52121.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Ba4 str. 657]
          Length = 195

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 51/192 (26%), Gaps = 10/192 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    +  D ET G +       Q      D  +   E          D    +  A  I
Sbjct: 1   MKK--IFIDTETTGLEP--GEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAI 56

Query: 61  TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            G + +K      G    + +  I       N   I +N      + +      N  +  
Sbjct: 57  HGFSVEKLKILSKGKKFKDLASEISSDLK--NGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114

Query: 119 RWSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +      +  +     R      P   +     +      L+        + V  HD
Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHD 174

Query: 177 AKADVYATLALV 188
           A+ DV A ++  
Sbjct: 175 ARYDVAALVSCY 186


>gi|319426754|gb|ADV54828.1| Exonuclease RNase T and DNA polymerase III [Shewanella putrefaciens
           200]
          Length = 223

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 49/172 (28%), Gaps = 20/172 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D E  G D   D+      V ++     +E  +    +         ++  I GI     
Sbjct: 41  DLEMTGLDPLQDQILSIGLVPIEHGVIPLEGAQQKLVQIRGSV---GQSATIHGILDNHL 97

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
           ++   +E   +     F +     ++  ++   D  + +            +        
Sbjct: 98  VQAVTIEDAMAW----FIAKTRGRVLVAHHSPLDCRFLQQDILA------IYHQAVFLPS 147

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            D L + +         I+         S +L       G+   +AH A  D
Sbjct: 148 IDTLMLEKRRLLRGHHAIK-------KGSLRLGACRERYGLPVYSAHSALTD 192


>gi|94988157|ref|YP_596258.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS9429]
 gi|94992044|ref|YP_600143.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS2096]
 gi|94541665|gb|ABF31714.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS9429]
 gi|94545552|gb|ABF35599.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS2096]
          Length = 833

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + I+S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIIDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +       
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              ++    R D +++ +  +                  + L  L+    I+   AH A 
Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLGHLSRQLNIDLAEAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           AD  AT  L   + +K   L     +
Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193


>gi|329896219|ref|ZP_08271397.1| Ribonuclease T [gamma proteobacterium IMCC3088]
 gi|328921890|gb|EGG29257.1| Ribonuclease T [gamma proteobacterium IMCC3088]
          Length = 211

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 58/194 (29%), Gaps = 30/194 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A   VR++   E  +  T      P +    +  A+  TG
Sbjct: 20  VIIDVETGGFNAQTDALLEVAATIVRMEPDGELYVHETVHHNVVPFEGANLEASALEFTG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R+ + EA+    I +              ++  +N  FD  +      R    
Sbjct: 80  IDPYHPFREALSEADALESIFKAIRKEIKSTNCTRAVLVGHNAHFDAGFINAAVERTGLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
                  N    +   D            +             L    L  GIE  N  A
Sbjct: 140 ------RNPFHPFSYFDTATLAGLAFGQTV-------------LAKACLQAGIEFDNKAA 180

Query: 175 HDAKADVYATLALV 188
           H A  D   T  L 
Sbjct: 181 HSAAYDADRTAHLF 194


>gi|310816220|ref|YP_003964184.1| Exonuclease [Ketogulonicigenium vulgare Y25]
 gi|308754955|gb|ADO42884.1| Exonuclease [Ketogulonicigenium vulgare Y25]
          Length = 200

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 64/200 (32%), Gaps = 27/200 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D ET   +       Q     V      IE+       P DD++ +  A  I GI 
Sbjct: 19  FLALDVET--ANYRAHSICQIGIAAVRPD-NTIETWTTLI-DPEDDFVANNIA--IHGIR 72

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+  +      A+  R++    S      + + +  FD         R + D   W+W  
Sbjct: 73  PEAVVGAPR-FAQAFRQLSPVLSRH----LIFQHSSFDSRCFAAAAERAYLDPPEWTWS- 126

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + R +         WP          L +L  A G++    HDA  D  A 
Sbjct: 127 -----DSVTLARRV---------WPELKGAGGGHGLGNLKKALGLQF-RHHDAGEDARAA 171

Query: 185 LALVWLIREKKPKLFEYLYD 204
             +V          F  L  
Sbjct: 172 AEVVLRAEAHTGLDFTALIK 191


>gi|148379717|ref|YP_001254258.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 3502]
 gi|153933415|ref|YP_001384014.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 19397]
 gi|153934824|ref|YP_001387556.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. Hall]
 gi|148289201|emb|CAL83296.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
 gi|152929459|gb|ABS34959.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 19397]
 gi|152930738|gb|ABS36237.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. Hall]
 gi|322805994|emb|CBZ03561.1| DNA polymerase III epsilon subunit [Clostridium botulinum H04402
           065]
          Length = 195

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 53/197 (26%), Gaps = 10/197 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    +  D ET G +       Q      D  +   E          D    +  A  I
Sbjct: 1   MKK--IFIDTETTGLEP--GEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAI 56

Query: 61  TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            G + +K      G    + +  I       +   I +N      + +      N  +  
Sbjct: 57  HGFSVEKLKILSKGKKFKDLASEISSDLK--DGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114

Query: 119 RWSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +      +  +     R      P   +     +      L+        + V  HD
Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHD 174

Query: 177 AKADVYATLALVWLIRE 193
           A+ DV A ++  +  + 
Sbjct: 175 ARYDVAALVSCYYRAKR 191


>gi|4929697|gb|AAD34109.1|AF151872_1 CGI-114 protein [Homo sapiens]
          Length = 205

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D+  + A +  D     +        K  D+ L        
Sbjct: 7   MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 66

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 67  EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQF 126

Query: 114 FYDSYRW 120
               +  
Sbjct: 127 MKHLHYR 133


>gi|289665843|ref|ZP_06487424.1| oligoribonuclease [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289669068|ref|ZP_06490143.1| oligoribonuclease [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 194

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 42/204 (20%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58
           +  +  D E  G D   D   + A +  D Q   +    E+    P +      EA+   
Sbjct: 9   DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDEW 64

Query: 59  --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
                  +   Q+ L   V  A+   +   F S         +  N+I  D  +      
Sbjct: 65  NRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMP 124

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R     +           D+  +      ++P                      ANG   
Sbjct: 125 RLERYFHYR-------NLDVSTIKELARRWAPTV--------------------ANGFAK 157

Query: 172 VNAHDAKADVYATLALVWLIREKK 195
            +AH A +DV  ++  +   R+  
Sbjct: 158 SSAHTALSDVRDSIDELRHYRQFM 181


>gi|158284602|ref|XP_307582.4| Anopheles gambiae str. PEST AGAP012804-PA [Anopheles gambiae str.
           PEST]
 gi|157020970|gb|EAA03378.5| AGAP012804-PA [Anopheles gambiae str. PEST]
          Length = 228

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 37/133 (27%), Gaps = 23/133 (17%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
            + V  D E  G DV  DR  + A +  D +   I            + + + P+AV   
Sbjct: 44  QNLVWIDLEMTGLDVEKDRILEIACIVTDSKLNIIAK--------GPNIIINEPDAVLAG 95

Query: 61  --------TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSR 107
                      +   +   +      +  R +  F         C +  N+I  D  +  
Sbjct: 96  MNSWCKDHHSKSGLIEAVKKSTYSVDQAERDVLDFVKKYCPERKCPMAGNSIYMDRLFIM 155

Query: 108 NIFYRNFYDSYRW 120
                     +  
Sbjct: 156 KYMPTLNEYLHYR 168


>gi|270158079|ref|ZP_06186736.1| oligoribonuclease [Legionella longbeachae D-4968]
 gi|289163655|ref|YP_003453793.1| oligoribonuclease [Legionella longbeachae NSW150]
 gi|269990104|gb|EEZ96358.1| oligoribonuclease [Legionella longbeachae D-4968]
 gi|288856828|emb|CBJ10639.1| oligoribonuclease [Legionella longbeachae NSW150]
          Length = 185

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDP 55
           M N+   +  D E  G +   DR  + A V  D     I       +   K   D +   
Sbjct: 1   MKNNQNLIWIDLEMTGLNPEQDRIIELATVVTDPHLNIIAEGPVFAISQSKVLLDGMDS- 59

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRN 108
                 G +   ++ L   V EA+  +R  +F           +  N+I  D  +   
Sbjct: 60  WNTKQHGQSGLVKRVLESDVNEAQAEKRTIEFLKQYLDKGKSPMCGNSICQDRRFLYK 117


>gi|255020848|ref|ZP_05292904.1| Oligoribonuclease [Acidithiobacillus caldus ATCC 51756]
 gi|254969639|gb|EET27145.1| Oligoribonuclease [Acidithiobacillus caldus ATCC 51756]
          Length = 200

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 47/174 (27%), Gaps = 17/174 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
           T   V  D E  G +   D+  + A +  D +   +    V     ++  L   D     
Sbjct: 5   TQRLVWIDLEMTGLNPERDQILEIASIVTDNELRVLSEGPVLAVHQSEAVLAAMDDWNQR 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +       +   F      P T  +  N++  D  +   +  R  
Sbjct: 65  THGNSGLVQRVRESRLDLGAVEAQTLDFLQAHVQPGTAPLCGNSVCQDRRFLARLMPRLE 124

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
              +            L+DV              P          L D+  + G
Sbjct: 125 RFLHYR----------LIDVSTIKELAYRWYPSLPRYPKTERHEALADIRESIG 168


>gi|297199883|ref|ZP_06917280.1| oligoribonuclease [Streptomyces sviceus ATCC 29083]
 gi|197710348|gb|EDY54382.1| oligoribonuclease [Streptomyces sviceus ATCC 29083]
          Length = 200

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 33/200 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  ++ D   + A +  D +   +        +P D  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGDGVDIVIRPPDQALETMPEVVR 60

Query: 60  ----ITGITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
               ++G+  + A    + +AE      + +    P    +  N++  D  +        
Sbjct: 61  QMHTVSGLLDELAGGTTLADAEEQVLAYVREHVKEPGKAPLCGNSVGTDRGF-------L 113

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D             D+  V      + P                    A  N  +   
Sbjct: 114 LRDMPTLEDYLHYRIVDVSSVKELARRWYPR-------------------AYFNSPDKNG 154

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A AD+  ++A +   RE
Sbjct: 155 NHRALADIRESIAELRYYRE 174


>gi|121606153|ref|YP_983482.1| exonuclease, RNase T and DNA polymerase III [Polaromonas
           naphthalenivorans CJ2]
 gi|120595122|gb|ABM38561.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas
           naphthalenivorans CJ2]
          Length = 550

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 49/184 (26%), Gaps = 25/184 (13%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           V+ D ET G          +    R+     +  S   F      +    P +  + G T
Sbjct: 7   VLIDTETTGLTVPIF--VVELGAQRMRGWLPE-GSP--FRRLLNQNLDIPPASSRVHGYT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +   RDG   A   R    +       ++ +N     D      + R            
Sbjct: 62  REILERDGEPAAVVYRDFAAY--AGGLPVVAFNLEYDLDEVLLPEWKRLGITP------- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                     M      +    Q       A + KLQ L     +    AH A  DV   
Sbjct: 113 ----------MVTAGFCALRLAQRLLDPVPAGNCKLQTLRQYYRLPERGAHTALGDVETV 162

Query: 185 LALV 188
             L+
Sbjct: 163 ADLL 166


>gi|328906095|gb|EGG25870.1| exonuclease [Propionibacterium sp. P08]
          Length = 207

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 59/198 (29%), Gaps = 36/198 (18%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           FV  D+ET     G         Q A V+V      ++        P        E  ++
Sbjct: 37  FVAVDFETANRMGGVSA-----CQLAMVKV-HDGHIVDRLNTLIRPPEGWD--SFEFTYL 88

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+    +   +  A  +  + QF    +   +  +N  FD    R        D Y  
Sbjct: 89  HGISAADVVDAPL-WANIADGVSQFV---DGATVYAHNAAFDSRVWRQ------LDEYFG 138

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKA 179
           +    +  +      +                 G  ++KL  +  A    +  N H A +
Sbjct: 139 TTTLPSPFFCSYRTAQ-------------RLIPGLPNYKLPTVLNACAPTYRLNHHRADS 185

Query: 180 DVYATLALVWLIREKKPK 197
           D  A   +V  ++     
Sbjct: 186 DAEACALIVCQLQRLADD 203


>gi|322514990|ref|ZP_08068002.1| oligoribonuclease [Actinobacillus ureae ATCC 25976]
 gi|322119043|gb|EFX91207.1| oligoribonuclease [Actinobacillus ureae ATCC 25976]
          Length = 183

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 9/128 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
           + + +  D E  G D   +R  + A +  D+    +    V      DD L       + 
Sbjct: 6   SQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLTVHQPDDLLNKMSDWCIK 65

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++  +  + E     +   F           I  N++  D  +        
Sbjct: 66  THTENGL-IERVKQSKLTERAVELQTLDFLKRWLPKGASPICGNSVPQDKRFLYKYMPDL 124

Query: 114 FYDSYRWS 121
               +   
Sbjct: 125 ADYFHYRH 132


>gi|313835961|gb|EFS73675.1| exonuclease [Propionibacterium acnes HL037PA2]
 gi|314927196|gb|EFS91027.1| exonuclease [Propionibacterium acnes HL044PA1]
 gi|314970727|gb|EFT14825.1| exonuclease [Propionibacterium acnes HL037PA3]
          Length = 184

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 59/198 (29%), Gaps = 36/198 (18%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           FV  D+ET     G         Q A V+V      ++        P        E  ++
Sbjct: 14  FVAVDFETANRMGGVSA-----CQLAMVKV-HDGHIVDRLNTLIRPPEGWD--SFEFTYL 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+    +   +  A  +  + QF    +   +  +N  FD    R        D Y  
Sbjct: 66  HGISAADVVDAPL-WANIADGVSQFV---DGATVYAHNAAFDSRVWRQ------LDEYFG 115

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKA 179
           +    +  +      +                 G  ++KL  +  A    +  N H A +
Sbjct: 116 TTTLPSPFFCSYRTAQ-------------RLIPGLPNYKLPTVLNACAPTYRLNHHRADS 162

Query: 180 DVYATLALVWLIREKKPK 197
           D  A   +V  ++     
Sbjct: 163 DAEACALIVCQLQRLADD 180


>gi|297242761|ref|ZP_06926699.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD]
 gi|296888972|gb|EFH27706.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD]
          Length = 261

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 4/110 (3%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G ++  D       V  + +                    +P+A  + G T + 
Sbjct: 34  FDTETTGANIGKDAIVSATLVLRNPELAHAGDVVS-TWLINPHQPMNPKASEVNGFTDEY 92

Query: 68  ALR---DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
                 +   E EF  R        N  ++ YN          ++   + 
Sbjct: 93  LQEHGGEPEEELEFLARAVSIAQAKNIPLLAYNAPFDIAMLRHDLKRWHL 142


>gi|240169372|ref|ZP_04748031.1| hypothetical protein MkanA1_08668 [Mycobacterium kansasii ATCC
           12478]
          Length = 1746

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 37/190 (19%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE-VFFCKPADDYLPDPEAVFIT 61
           +   + D ET G D A D   + A V +D       +       +               
Sbjct: 102 DRIAVLDIETTGLDSAADFVCELALVGLD------GTPLANIMVQLPAGVA--------- 146

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
              P ++        +  R +    +  +  +IG+N + FD  +      R   D     
Sbjct: 147 --RPNESFGAEFPLDDALRLLEAHLAEID-LVIGHNLLEFDRPFLEKAAQRAGVDPPHLP 203

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                S  D L +   +                  +  L DL     I H   H A AD 
Sbjct: 204 -----SCVDSLHLATLVDV-------------AMPNRSLADLTHQFNIVHQEPHRALADA 245

Query: 182 YATLALVWLI 191
            AT  +V  +
Sbjct: 246 TATAGVVRAM 255


>gi|78065664|ref|YP_368433.1| oligoribonuclease [Burkholderia sp. 383]
 gi|123569006|sp|Q39IC7|ORN_BURS3 RecName: Full=Oligoribonuclease
 gi|77966409|gb|ABB07789.1| Exonuclease [Burkholderia sp. 383]
          Length = 206

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 13/173 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + V  D E  G D   DR  + A V  +   +      VF    +D+ L   D       
Sbjct: 19  NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYS-----RNIFY 111
           G +    +     V EAE + ++  F +    P    +  N+I  D  +          +
Sbjct: 79  GRSGLIDRVRASTVTEAEAAEQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERF 138

Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
            ++ +    +      RW   +       A            D    ++   L
Sbjct: 139 FHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYREHFL 191


>gi|323191668|gb|EFZ76924.1| exonuclease family protein [Escherichia coli RN587/1]
          Length = 153

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 11/108 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 14  LFLDTETTGLD-NTAEALEIG--LTDASGQVV-----FETRLKPTVAIGAQAAAVHGISE 65

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           Q      +   + +R++          +I +N         +     +
Sbjct: 66  QALCGAPL-WTDVARQLRHAI--GGRPVIIFNARFDIRILKQTAAAHS 110


>gi|283456582|ref|YP_003361146.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283103216|gb|ADB10322.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 439

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 21/212 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIE--STEVFFCKPADDYLPDPEAVFI 60
             V  D ET G     D          D       +         +  +      +   +
Sbjct: 225 TLVGIDLETTGTSPNQDYIIDAGWELYDMATGRASDAQRHTYGLSRQRELRGIGRDITSL 284

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT        V   E +       +  +  I+  +N RF+ ++          + Y  
Sbjct: 285 TGITTADVAGH-VPFQEDADAQRTMMTALDGRIMVAHNARFEQFFLIGNC-----EGYAE 338

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-------- 172
           +  +G  R      + A ++       +   D    +  L D        H         
Sbjct: 339 ALRDGRIRIIDSMKV-AHHSEDARAQGFRLDDYARRNHALDDDRDMQVPAHDGGLIRLDQ 397

Query: 173 ---NAHDAKADVYATLALVWLIREKKPKLFEY 201
                H    D +  +  +          +E 
Sbjct: 398 GERERHLGLEDAHIMMRAIRNQLGVLRSRYER 429


>gi|227541256|ref|ZP_03971305.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51866]
 gi|227182972|gb|EEI63944.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC
            51866]
          Length = 1246

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 86/298 (28%), Gaps = 45/298 (15%)

Query: 5    FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            F + + +T G     DR  +   V      +   +                 A  I GI+
Sbjct: 849  FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTL---INPRRSFSDSA--IHGIS 902

Query: 65   PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +  +   V E E +  I +        I+  ++  F        F R+   +       
Sbjct: 903  ERMTVATPVFE-EVADDIAELLDRR---ILIAHDAPFVSKQLGREFSRSNVKAIHL---- 954

Query: 125  GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                 +    +  G++   L     A G+++ ++H A  D  AT
Sbjct: 955  ---------------NDGYCTMSHSPKLLGSSGRSLSSALDAAGLKNEHSHCALDDAMAT 999

Query: 185  LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
              L+ ++                K  +            +H       +R    +    +
Sbjct: 1000 ANLLNVLLH--------------KGAIAAKYPAMQFVSAIHPRRTPTVTREFVEMTESTS 1045

Query: 245  WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT--SHDELKGLVPVPIKEVHLNKC 300
            W  +  D +     +      Q LD V L + + T    D  K  V + + +  +N+ 
Sbjct: 1046 WISQIIDQLPTSGEADIDEFMQLLDIVMLDREVSTHERLDLYKQAVNLGLSQQDINRA 1103


>gi|171742315|ref|ZP_02918122.1| hypothetical protein BIFDEN_01424 [Bifidobacterium dentium ATCC
           27678]
 gi|171277929|gb|EDT45590.1| hypothetical protein BIFDEN_01424 [Bifidobacterium dentium ATCC
           27678]
          Length = 445

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 21/212 (9%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIE--STEVFFCKPADDYLPDPEAVFI 60
             V  D ET G     D          D       +         +  +      +   +
Sbjct: 231 TLVGIDLETTGTSPNQDYIIDAGWELYDMATGRASDAQRHTYGLSRQRELRGIGRDITSL 290

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT        V   E +       +  +  I+  +N RF+ ++          + Y  
Sbjct: 291 TGITTADVAGH-VPFQEDADAQRTMMTALDGRIMVAHNARFEQFFLIGNC-----EGYAE 344

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-------- 172
           +  +G  R      + A ++       +   D    +  L D        H         
Sbjct: 345 ALRDGRIRIIDSMKV-AHHSEDARAQGFRLDDYARRNHALDDDRDMQVPAHDGGLIRLDQ 403

Query: 173 ---NAHDAKADVYATLALVWLIREKKPKLFEY 201
                H    D +  +  +          +E 
Sbjct: 404 GERERHLGLEDAHIMMRAIRNQLGVLRSRYER 435


>gi|15827135|ref|NP_301398.1| oligoribonuclease [Mycobacterium leprae TN]
 gi|221229613|ref|YP_002503029.1| oligoribonuclease [Mycobacterium leprae Br4923]
 gi|7227905|sp|O07708|ORN_MYCLE RecName: Full=Oligoribonuclease
 gi|2222713|emb|CAB09908.1| hypothetical protein MLCL383.34c [Mycobacterium leprae]
 gi|13092683|emb|CAC29935.1| putative oligoribonuclease [Mycobacterium leprae]
 gi|219932720|emb|CAR70520.1| putative oligoribonuclease [Mycobacterium leprae Br4923]
          Length = 215

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 45/158 (28%), Gaps = 26/158 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M +  V  D E  G D+  D+  + A +  D     +            D +   ++  +
Sbjct: 1   MHDELVWIDCEMTGLDLGSDQLIEIAALVTDADLNILGDGV--------DVVIHIDSTAL 52

Query: 61  TGITP---QKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
           + +     +   R G++             E+     I+     P T  +  N+I  D  
Sbjct: 53  SSMIDVVAEMHSRSGLINEVESSIVDLVTAESIVLDYINNHVKQPKTAPLAGNSIATDRS 112

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
           +          DS+        S    L        + 
Sbjct: 113 FI--ARDMPTLDSFLHYRMIDVSSIKELCRRWYPRIYF 148


>gi|152973034|ref|YP_001338180.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|166216264|sp|A6TH79|ORN_KLEP7 RecName: Full=Oligoribonuclease
 gi|150957883|gb|ABR79913.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 181

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G D   DR  + A +  D     +          +D    L D   V  
Sbjct: 6   NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDEWNVRT 65

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+   +     V E +       F           I  N+I  D  +      +  
Sbjct: 66  HTGSGL-VDRVKASTVSEHDAELATIDFLKQWVPAGKSPICGNSIGQDRRFLFKYMPQLE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 AYFHYR 130


>gi|90962124|ref|YP_536040.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius UCC118]
 gi|227891147|ref|ZP_04008952.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius ATCC 11741]
 gi|90821318|gb|ABD99957.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius UCC118]
 gi|227867021|gb|EEJ74442.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius ATCC 11741]
          Length = 177

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 56/190 (29%), Gaps = 28/190 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +         A   V +  +  +           D       + + GI
Sbjct: 2   NFVAIDFET--ANPKRYSACSLALTVV-KNNQIADQFYSL---IKPDTDFSWRNIQVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T ++         E    I  FF+  N  +I  +N  FD                   +D
Sbjct: 56  TEKQVQNAP-SFPELWPHIQNFFTPNN--LIVAHNASFDSSVLLRT---------LEHYD 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + LLD +R    F  D              KL  +     I+  + H+A  D  A
Sbjct: 104 ITLPHYQLLDTLRTSKKFFKDFEN----------HKLDTICNNLNIDLKHHHNALFDSTA 153

Query: 184 TLALVWLIRE 193
              ++     
Sbjct: 154 CAEILLYQAN 163


>gi|300767630|ref|ZP_07077540.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300494615|gb|EFK29773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 182

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   D     A   V    +  +           +       V I GI
Sbjct: 6   NFVAMDFET--ANAKRDSACSLALTVVRNN-QISDEFYTL---IKPESDFFWRNVQIHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        +  + I  FF      ++  +N  FD    RN               
Sbjct: 60  HEADVADAPK-FPDVWQHIAPFFQRD--RLVIAHNAPFDIGVLRNTLAHYGI-------- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  +D ++    F P+            + KL  +  A  I+  + H+A  D  A
Sbjct: 109 -SAPEYLSMDTVKTSQRFYPEL----------PNHKLDTVCQALDIDLQHHHNALDDSLA 157

Query: 184 TLALV 188
              ++
Sbjct: 158 CANIL 162


>gi|325921138|ref|ZP_08183009.1| RNAse T [Xanthomonas gardneri ATCC 19865]
 gi|325548410|gb|EGD19393.1| RNAse T [Xanthomonas gardneri ATCC 19865]
          Length = 213

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 58/213 (27%), Gaps = 43/213 (20%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE-----VFFCKPADD 50
           M+  F     V+ D ET G D       + A V ++   E                PA  
Sbjct: 18  MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMDAE--GRFFPGDTASAHLVPAPG 75

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIR 100
              DP+++ ITGI     L      A+            +            I+  +N  
Sbjct: 76  LEIDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAH 131

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           FD  +      R  +    +      S +D + +    Y              G T    
Sbjct: 132 FDLNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLAR 174

Query: 161 QDLALANGIEHVNAHDAKADVYATLALVWLIRE 193
              A        +AH A  D   T  L   I  
Sbjct: 175 AAQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207


>gi|228472478|ref|ZP_04057240.1| exonuclease, RNase T and DNA polymerase III [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276163|gb|EEK14910.1| exonuclease, RNase T and DNA polymerase III [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 184

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 7/138 (5%)

Query: 1   MTNHFVIYDYETF---GRDV--ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           MTN  +I D E     G      +    +     +D    ++        KP       P
Sbjct: 1   MTNKIIIIDLEATCWEGIPPKGEVSEIIEIGICLLDTLTGEVSDNRGILVKPT-HSKISP 59

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T +TP+   R+GV   E  + + + +         Y N    +   +    R   
Sbjct: 60  FCTQLTTLTPELVAREGVSFEEALQILKKEYQAYQYTWASYGNYD-RNMLQKQCALRKLP 118

Query: 116 DSYRWSWDNGNSRWDLLD 133
              R    N   R+  + 
Sbjct: 119 YPMRNEHINVKERFQEVT 136


>gi|187932518|ref|YP_001886209.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
 gi|187720671|gb|ACD21892.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
          Length = 243

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 61/213 (28%), Gaps = 27/213 (12%)

Query: 4   HFVIYDYETFGRDVALD--------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           ++++YD E F    + D           Q   V+++ + E + +      KP       P
Sbjct: 2   NYIVYDLE-FNHQYSKDNKVSNLTFEIIQIGAVKLNNKLEIVSTFN-RLIKPTVHTEIHP 59

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T IT +    +    ++      +F       +  +          +N+ + N  
Sbjct: 60  FIKDLTQITTEMVNSEKH-FSDVYNDFIKFIGNKEFTVCIW-GTSDIKELLKNVKFHNL- 116

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                         D L     +   +   I+ P             +   N       H
Sbjct: 117 -----------KEIDDLRKYIDVQNLASKYIKTPKGTKVGLK---TAIEFFNLPIEKEFH 162

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNK 208
           DA  D Y T  +   +   K K   Y   Y  +
Sbjct: 163 DAFNDAYYTAQIFKKLYTSKIKSSIYNNPYSKR 195


>gi|170760682|ref|YP_001787078.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169407671|gb|ACA56082.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 195

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 54/197 (27%), Gaps = 10/197 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    +  D ET G +       Q      D  ++  E          D    +  A  I
Sbjct: 1   MKK--IFIDTETTGLEP--GEIIQLTYCVCDINFKGEEKVSFAKNFFFDVDYIEESAESI 56

Query: 61  TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            G + +K      G    + +  I       +   I +N      + +      N  +  
Sbjct: 57  HGFSVEKLKILSKGKKFKDLASEISSDLK--DGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114

Query: 119 RWSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +      +  +     R      P   +     +      L+        + V  HD
Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHD 174

Query: 177 AKADVYATLALVWLIRE 193
           A+ DV A ++  +  + 
Sbjct: 175 ARYDVAALVSCYYRAKR 191


>gi|150260590|ref|ZP_01917318.1| oligoribonuclease [Yersinia pestis CA88-4125]
 gi|161484882|ref|NP_667960.2| oligoribonuclease [Yersinia pestis KIM 10]
 gi|161511446|ref|NP_991914.2| oligoribonuclease [Yersinia pestis biovar Microtus str. 91001]
 gi|162419396|ref|YP_001605286.1| oligoribonuclease [Yersinia pestis Angola]
 gi|165926762|ref|ZP_02222594.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936480|ref|ZP_02225048.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011882|ref|ZP_02232780.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213971|ref|ZP_02240006.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167400566|ref|ZP_02306075.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418918|ref|ZP_02310671.1| oligoribonuclease [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423542|ref|ZP_02315295.1| oligoribonuclease [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218927569|ref|YP_002345444.1| oligoribonuclease [Yersinia pestis CO92]
 gi|229358039|ref|YP_653824.2| oligoribonuclease [Yersinia pestis Antiqua]
 gi|229559847|ref|YP_649232.2| oligoribonuclease [Yersinia pestis Nepal516]
 gi|229836625|ref|ZP_04456791.1| oligoribonuclease [Yersinia pestis Pestoides A]
 gi|229840237|ref|ZP_04460396.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842315|ref|ZP_04462470.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229903946|ref|ZP_04519059.1| oligoribonuclease [Yersinia pestis Nepal516]
 gi|270489066|ref|ZP_06206140.1| exonuclease [Yersinia pestis KIM D27]
 gi|294502475|ref|YP_003566537.1| oligoribonuclease [Yersinia pestis Z176003]
 gi|20138838|sp|Q8ZIW9|ORN_YERPE RecName: Full=Oligoribonuclease
 gi|115346180|emb|CAL19048.1| oligoribonuclease [Yersinia pestis CO92]
 gi|149289998|gb|EDM40075.1| oligoribonuclease [Yersinia pestis CA88-4125]
 gi|162352211|gb|ABX86159.1| oligoribonuclease [Yersinia pestis Angola]
 gi|165915596|gb|EDR34205.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921385|gb|EDR38609.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989241|gb|EDR41542.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204766|gb|EDR49246.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962912|gb|EDR58933.1| oligoribonuclease [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049934|gb|EDR61342.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057712|gb|EDR67458.1| oligoribonuclease [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679716|gb|EEO75819.1| oligoribonuclease [Yersinia pestis Nepal516]
 gi|229690625|gb|EEO82679.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696603|gb|EEO86650.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706309|gb|EEO92317.1| oligoribonuclease [Yersinia pestis Pestoides A]
 gi|262360505|gb|ACY57226.1| oligoribonuclease [Yersinia pestis D106004]
 gi|262364452|gb|ACY61009.1| oligoribonuclease [Yersinia pestis D182038]
 gi|270337570|gb|EFA48347.1| exonuclease [Yersinia pestis KIM D27]
 gi|294352934|gb|ADE63275.1| oligoribonuclease [Yersinia pestis Z176003]
 gi|320013769|gb|ADV97340.1| oligoribonuclease [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 181

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V     + +   L D   V 
Sbjct: 5   QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVR 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++       + +   +  +F           I  N++  D  +        
Sbjct: 65  THTGSGL-VERVKASPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EAYFHYR 130


>gi|329914413|ref|ZP_08276114.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480]
 gi|327545130|gb|EGF30416.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480]
          Length = 201

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 37/124 (29%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + V  D E  G D   DR  + A V  D     +    VF    +D  L   D       
Sbjct: 27  NLVWLDMEMTGLDPETDRIIEVAVVVTDSNLNILGQGPVFAIHQSDAALDGMDNWNKGTH 86

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +   ++     V EA+    +  F           +  N+I  D  +      +    
Sbjct: 87  GRSGLIERVKASTVTEADAEAALIAFLKDYVPAGKSPMCGNSICQDRRFMARGMPKLEAF 146

Query: 117 SYRW 120
            +  
Sbjct: 147 FHYR 150


>gi|293393221|ref|ZP_06637536.1| oligoribonuclease [Serratia odorifera DSM 4582]
 gi|291424367|gb|EFE97581.1| oligoribonuclease [Serratia odorifera DSM 4582]
          Length = 181

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|259501466|ref|ZP_05744368.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners DSM 13335]
 gi|302191565|ref|ZP_07267819.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus iners AB-1]
 gi|309803902|ref|ZP_07697986.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 11V1-d]
 gi|309804516|ref|ZP_07698582.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|309806946|ref|ZP_07700929.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|309808365|ref|ZP_07702268.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|309809203|ref|ZP_07703075.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|325912750|ref|ZP_08175130.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|329919994|ref|ZP_08276872.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 1401G]
 gi|259167134|gb|EEW51629.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners DSM 13335]
 gi|308163997|gb|EFO66260.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 11V1-d]
 gi|308166169|gb|EFO68386.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|308166670|gb|EFO68866.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|308168428|gb|EFO70543.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|308170503|gb|EFO72524.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|325477964|gb|EGC81096.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|328936765|gb|EGG33205.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 1401G]
          Length = 177

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET   +   D     A V V    + I+S              D   + I GI
Sbjct: 2   NFTAMDFET--ANRHYDSACSLALVLVRDN-KIIDSFYTV---INPQMPFDKNNIKIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E   +I   F      ++  +N RFD    +    +           
Sbjct: 56  TANDVKDAP-TMDEVWPKIRLLFQ--PGMLVVAHNARFDCNVMKKSLKKY---------- 102

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    ++    Y          +      +++L  ++    I+  + H+A +D  A
Sbjct: 103 ---------NIAEPHYLTIDTLATSRALMPNLKNYRLDTVSNQLNIDLWHHHNALSDSEA 153

Query: 184 TLALVWLIREK 194
              ++    ++
Sbjct: 154 CAEILIKQNQQ 164


>gi|157963361|ref|YP_001503395.1| oligoribonuclease [Shewanella pealeana ATCC 700345]
 gi|157848361|gb|ABV88860.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana
           ATCC 700345]
          Length = 181

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G +  +DR  + A +  D++   I    VF    +D+   L D      
Sbjct: 6   NNLIWVDLEMTGLEPDVDRIIEIATIVTDKELNIIAQGPVFAIHQSDEQLALMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +     + E +       F S         +  N+I  D  +          
Sbjct: 66  HGQSGLVDRVRASTINEEQAIAETIAFLSQYVPAGASPMCGNSIGQDRRFLNRYMPELEG 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|50955048|ref|YP_062336.1| oligoribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81826639|sp|Q6AEG5|ORN_LEIXX RecName: Full=Oligoribonuclease
 gi|50951530|gb|AAT89231.1| oligoribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 207

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 23/134 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++  V  D E  G D+A+D   + A V  D     ++        P    +  P+A  + 
Sbjct: 5   SDRLVWIDCEMTGLDLAVDELVEIAVVITDFDLNVLD--------PGLSIVIKPDASALD 56

Query: 62  GITP---QKALRDGVV------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
            +     +     G++            E E    + +F     T  +  N I  D  + 
Sbjct: 57  NMNDFVREMHTTSGLIEEIPGGVSLAEAEYEALEYVLRFAPAARTAPLAGNTIGTDRMFL 116

Query: 107 RNIFYRNFYDSYRW 120
                R     +  
Sbjct: 117 AKYMPRLDTHLHYR 130


>gi|292898154|ref|YP_003537523.1| oligoribonuclease [Erwinia amylovora ATCC 49946]
 gi|291198002|emb|CBJ45104.1| oligoribonuclease [Erwinia amylovora ATCC 49946]
          Length = 187

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDADLNILAE 42


>gi|108800606|ref|YP_640803.1| oligoribonuclease [Mycobacterium sp. MCS]
 gi|119869745|ref|YP_939697.1| oligoribonuclease [Mycobacterium sp. KMS]
 gi|126436222|ref|YP_001071913.1| oligoribonuclease [Mycobacterium sp. JLS]
 gi|122976715|sp|Q1B5T7|ORN_MYCSS RecName: Full=Oligoribonuclease
 gi|166216269|sp|A3Q2P5|ORN_MYCSJ RecName: Full=Oligoribonuclease
 gi|166216270|sp|A1UJ99|ORN_MYCSK RecName: Full=Oligoribonuclease
 gi|108771025|gb|ABG09747.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp. MCS]
 gi|119695834|gb|ABL92907.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp. KMS]
 gi|126236022|gb|ABN99422.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp. JLS]
          Length = 215

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 54/208 (25%), Gaps = 44/208 (21%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M +  V  D E  G D+  D   + A +  D     +          A D   D     +
Sbjct: 1   MRDELVWIDCEMTGLDLRSDLLIEIAVLVTDADLNILGDGLDVVIH-APDEALDAMIPVV 59

Query: 61  TGITPQKALRDGVVE-----------AE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
           T    +   R G++E           AE      I        T  +  N+I  D  +  
Sbjct: 60  T----EMHTRSGLIEEVRASTVDLATAEEMVLDYIRGHVKQAKTAPLAGNSIATDRGFIA 115

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
               +   D Y        S    L        +                          
Sbjct: 116 RDMAK--LDDYLHYRMIDVSSIKELCRRWYPRIYFG------------------------ 149

Query: 168 GIEHVNAHDAKADVYATLALVWLIREKK 195
             E   AH A AD++ ++  +   R+  
Sbjct: 150 QPEKGLAHRALADIHESIRELKYYRQTA 177


>gi|306832202|ref|ZP_07465356.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325979121|ref|YP_004288837.1| DNA polymerase III subunit epsilon [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|304425641|gb|EFM28759.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325179049|emb|CBZ49093.1| DNA polymerase III subunit epsilon [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 195

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ +D E F          Q + V+  ++  +++S + +      D         +TGIT
Sbjct: 7   YIAFDLE-FNTVAEKSHIIQVSAVKF-KEGHEVDSFDTY---VYTDVPLQSFINGLTGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +K         E       F     T ++GYN ++ D                      
Sbjct: 62  SEKIANAPK-LDEVLADFKTFVGE--TALVGYNALKSDLPLLAENELD------------ 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +  +  +     +  +  +G  + KL  +A   GI   + H++  D   T
Sbjct: 107 -------LTELYKVDLYDEAFERRSTDLNGIANLKLTSVAEFLGIS-GHGHNSLEDARMT 158

Query: 185 LALVWLIREKKPK 197
             +     E    
Sbjct: 159 ALVYEKFMEFDEN 171


>gi|251793080|ref|YP_003007806.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700]
 gi|247534473|gb|ACS97719.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700]
          Length = 217

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   +   + A +  ++D     + +    F  +P +    DPE++   G
Sbjct: 23  VIIDVETAGLNAKTNALLELAAITVKMDDNGHLVPDQKCHFHIQPFEGANIDPESIKFNG 82

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ + +  +E  + + +          II  +N  FD  +      R    
Sbjct: 83  IDIDNPLRGAISENIAISEMFKMVRRAQKDAECQRSIIVAHNAAFDQGFIMAAAQR---- 138

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +  N    +   D            +   +       F           +   AH 
Sbjct: 139 --TNAKRNPFHPFSTFDTATLSGFMFGQTVLIKACQAAKIPF-----------DGSQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAELFCYMVNH 203


>gi|292489630|ref|YP_003532520.1| oligoribonuclease [Erwinia amylovora CFBP1430]
 gi|291555067|emb|CBA23161.1| oligoribonuclease [Erwinia amylovora CFBP1430]
 gi|312173806|emb|CBX82060.1| oligoribonuclease [Erwinia amylovora ATCC BAA-2158]
          Length = 193

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 12 NNLIWIDLEMTGLDPERDRIIEIATLVTDADLNILAE 48


>gi|149926412|ref|ZP_01914673.1| Exonuclease [Limnobacter sp. MED105]
 gi|149824775|gb|EDM83989.1| Exonuclease [Limnobacter sp. MED105]
          Length = 244

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 63/195 (32%), Gaps = 35/195 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK----IESTEVFFCKPA------DDYLP 53
           V+ D E+ G +   DR    A   +  D Q        ++ EV   +P       +    
Sbjct: 38  VVLDVESSGLNPKKDRLISVAATAIVFDAQRRPRISLTDTFEVVIKQPPEIVDMIEFEAI 97

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           D   + I GI    A + GV +AE +  + +F        +   +  FD+        + 
Sbjct: 98  DKNNILIHGIGIG-AQQKGV-KAEVA--LSEFLRYVGHSPLIAFHSWFDEILINKALRKV 153

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
              +    W         LD+         +  Q P          L       GIE   
Sbjct: 154 LGRTTHRHW---------LDLEHLAAVLHKENHQLP----------LDVWMQRYGIECEQ 194

Query: 174 AHDAKADVYATLALV 188
            H A ADV AT  L+
Sbjct: 195 RHQAAADVLATAQLL 209


>gi|157368671|ref|YP_001476660.1| oligoribonuclease [Serratia proteamaculans 568]
 gi|166918640|sp|A8G8U2|ORN_SERP5 RecName: Full=Oligoribonuclease
 gi|157320435|gb|ABV39532.1| Exonuclease RNase T and DNA polymerase III [Serratia
          proteamaculans 568]
          Length = 181

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|113868667|ref|YP_727156.1| oligoribonuclease [Ralstonia eutropha H16]
 gi|113527443|emb|CAJ93788.1| Oligoribonuclease (3'->5' exoribonuclease) [Ralstonia eutropha H16]
          Length = 208

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 12/140 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G     DR  + A V  D +   +    V     +D  L   D      
Sbjct: 14  NNLIWLDMEMTGLQPDTDRIIEIAIVVTDSELNILAEGPVLVIHQSDAVLDGMDNWNKGT 73

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN-----IF 110
            G +    K     + E +    +  F       +   +  N+I  D  +          
Sbjct: 74  HGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQDRRFMARYMPKLEA 133

Query: 111 YRNFYDSYRWSWDNGNSRWD 130
           + ++ +    +      RW+
Sbjct: 134 FFHYRNLDVSTLKELCKRWE 153


>gi|50122884|ref|YP_052051.1| oligoribonuclease [Pectobacterium atrosepticum SCRI1043]
 gi|59798024|sp|Q6D037|ORN_ERWCT RecName: Full=Oligoribonuclease
 gi|49613410|emb|CAG76861.1| oligoribonuclease [Pectobacterium atrosepticum SCRI1043]
          Length = 180

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 32/125 (25%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G +   DR  + A +  D     +    V     +D    L D   V  
Sbjct: 5   NNLIWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAEGPVLAVHQSDSQLALMDDWNVRT 64

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       E         F           I  N+I  D  +          
Sbjct: 65  HGASGLTDRVKVSTADERAAELETLAFLQKWVPAGKSPICGNSIGQDRRFLFRYMPELEA 124

Query: 116 DSYRW 120
             +  
Sbjct: 125 YFHYR 129


>gi|312871342|ref|ZP_07731439.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 3008A-a]
 gi|312875261|ref|ZP_07735270.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089224|gb|EFQ47659.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2053A-b]
 gi|311093135|gb|EFQ51482.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 3008A-a]
          Length = 177

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET   +   D     A V V    + I+S              D   + I GI
Sbjct: 2   NFTAMDFET--ANRHYDSACSLALVLVRDN-KIIDSFYTV---INPQMPFDKNNIKIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E   +I   F      ++  +N RFD    +    +           
Sbjct: 56  TANDVKDAP-TMNEVWPKIRLLFQ--PGMLVVAHNARFDCNVMKKSLKKY---------- 102

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    ++    Y          +      +++L  ++    I+  + H+A +D  A
Sbjct: 103 ---------NIAEPHYLTIDTLATSRALMPNLKNYRLDTVSNQLNIDLWHHHNALSDSEA 153

Query: 184 TLALVWLIREK 194
              ++    ++
Sbjct: 154 CAEILIKQNQQ 164


>gi|119468877|ref|ZP_01611902.1| putative DNA polymerase, exonuclease activity [Alteromonadales
           bacterium TW-7]
 gi|119447529|gb|EAW28796.1| putative DNA polymerase, exonuclease activity [Alteromonadales
           bacterium TW-7]
          Length = 207

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 55/203 (27%), Gaps = 20/203 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  +++ D E  G D         A V +D Q  K+  ++ F  K        P      
Sbjct: 22  SQRYLVIDLELTGLDSKQHEIVSVAWVVIDNQCIKMSESQHFINKDVKSLEQSP---VFH 78

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+       G         +   FS    CI+ ++N   D  + +              
Sbjct: 79  GISTDSVA-QGQSLQSILMSLSAHFSD---CILVFHNAMLDWGFLKLALKNAGVT----- 129

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D L + +         I+            L +      +   + H A  D 
Sbjct: 130 -QRPKLIIDTLQIEKKRLLQHASDIKL-------DDLTLNECRNRYDLPSYHCHHALTDA 181

Query: 182 YATLALVWLIREKKPKLFEYLYD 204
            AT  L+     +     E    
Sbjct: 182 QATAELLLAQCHQIGAGKELTLR 204


>gi|300812809|ref|ZP_07093204.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496145|gb|EFK31272.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 119

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + ++D E  G+     +  Q   ++V    + +      +  P+ + + +     +TGI+
Sbjct: 8   YTVFDLEITGK-----KIIQIGALKVRDD-QTVAKFST-YVNPSLEKI-NDYVSHLTGIS 59

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
             +     +++ E       F    +  ++G+N + FD     +  Y
Sbjct: 60  NYQTDAVPLID-EVMPDFLDFV--GDDTLVGHNILSFDCNVLADNGY 103


>gi|75812567|ref|YP_320186.1| exonuclease [Anabaena variabilis ATCC 29413]
 gi|75705323|gb|ABA24997.1| Exonuclease [Anabaena variabilis ATCC 29413]
          Length = 192

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 8/126 (6%)

Query: 5   FVIYDYETF----GRDVALD-RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
           F++ D E      G     +    +   V V+ +  + ++  + F  KP    +      
Sbjct: 10  FLVLDLEATCCDKGTIKRHEMEIIEIGAVMVEAQTLKILDEFQTFI-KPIRHPILTEFCK 68

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +T IT  +         E    + Q+ S     + G       + + ++  + N     
Sbjct: 69  LLTSITQTQVDHAPE-YPEAIAMLKQWLSKYPNAVFGSWGDYDRNQFKQDSKFHNILFPI 127

Query: 119 RWSWDN 124
            +   N
Sbjct: 128 AYPHIN 133


>gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana]
 gi|9759593|dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana]
 gi|332003813|gb|AED91196.1| exonuclease family protein [Arabidopsis thaliana]
          Length = 468

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 28/191 (14%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET        +     +F  + V  ++  ++ S      +PAD  L    +V  
Sbjct: 9   IAFFDVETT--VPKRGQRFAILEFGSILVCPKKLTELRSYTTL-VQPADLSLISSLSVRC 65

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI     +   +  A+ +  ++           G+N +RFD         R  +     
Sbjct: 66  NGIKRDDVVLAPL-FADIADTVYDIL--HGRIWAGHNILRFD-----CARIREAFAEIGR 117

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L ++                   A   K+  LA   G+ +   H +  D
Sbjct: 118 QPPEPKGAIDSLGLL------------TQKFGRRAGDMKMATLARYFGLGN-QTHRSLDD 164

Query: 181 VYATLALVWLI 191
           V   L ++   
Sbjct: 165 VRMNLEVLKYC 175


>gi|307104722|gb|EFN52974.1| hypothetical protein CHLNCDRAFT_26251 [Chlorella variabilis]
          Length = 194

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 44/168 (26%), Gaps = 7/168 (4%)

Query: 21  RPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
              + + V VD      +      + +P            +TGIT       GV      
Sbjct: 1   EIIELSCVVVDTARTTVLPVHFQRYVRPDQHPCLSDFCTELTGITQAMV-DGGVPLHTAL 59

Query: 80  RRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138
           + +  +         +G         +S    +R   D           +W  ++  R  
Sbjct: 60  QDLDAWLRQQGLIGQVGGRCCSSRRCFSCCSTWR---DWDLKVQMQMECKWRRIEQPRWQ 116

Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
             +   G  W        + +    A   G +   AH A  D   T  
Sbjct: 117 KRWIDIGAVWFKHSGKKGNLRASCEAAELGWD-GRAHSAIDDARNTAR 163


>gi|332974570|gb|EGK11490.1| oligoribonuclease [Kingella kingae ATCC 23330]
          Length = 182

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+    D E  G +   D+  + A +  D+    +  + V+    +D+ +   D     
Sbjct: 4   QNNLCWLDMEMTGLNPDTDKIIEIAMIITDKHLNVLAQSPVYAIHQSDEIMNGMDEWCTT 63

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+T Q+       EA+    +  +       NT  +  N I  D  +      R 
Sbjct: 64  THARTGLT-QRVKESTWTEAQVESELLAWMQQWLPANTTPMCGNTIHQDRRFMVRHMPRL 122

Query: 114 FYDSYRW 120
               +  
Sbjct: 123 EAFFHYR 129


>gi|213584766|ref|ZP_03366592.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
          str. E98-0664]
          Length = 43

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 32/43 (74%)

Query: 43 FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQF 85
          F+CKPADDYLP P AV ITGITPQ+A   G  EA F+RRIH  
Sbjct: 1  FYCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHAL 43


>gi|163751265|ref|ZP_02158493.1| ribonuclease T [Shewanella benthica KT99]
 gi|161328979|gb|EDQ00053.1| ribonuclease T [Shewanella benthica KT99]
          Length = 225

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 62/200 (31%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D +    ++ T  +  +P +    +P+A+   G
Sbjct: 20  VVIDVETAGFNCQTDALLEIAVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCALK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
                       +   D            +             L       GI+  N  A
Sbjct: 140 ------RTPFHPFATFDTAALSGLALGHTV-------------LAKACSIAGIDFDNSEA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  K
Sbjct: 181 HSALYDTERTAELFCHIVNK 200


>gi|317402939|gb|EFV83479.1| oligoribonuclease [Achromobacter xylosoxidans C54]
          Length = 181

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 13/128 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
           N  V  D E  G D   +R  + A V  +     +    V     +D  L   +A+    
Sbjct: 6   NRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPVLVVHQSDSLL---DAMDNWN 62

Query: 59  -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112
               G +    K     + EA+    +  F +         +  N I  D  +      R
Sbjct: 63  KSTHGKSGLIDKVRASTISEAQAEDTLLAFLAQHVPAGKSPLCGNTISQDRRFMFAYMPR 122

Query: 113 NFYDSYRW 120
                +  
Sbjct: 123 LEQFFHYR 130


>gi|323492478|ref|ZP_08097626.1| hypothetical protein VIBR0546_15616 [Vibrio brasiliensis LMG 20546]
 gi|323313265|gb|EGA66381.1| hypothetical protein VIBR0546_15616 [Vibrio brasiliensis LMG 20546]
          Length = 176

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 21/151 (13%)

Query: 1   MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           M ++ V+ +D E          T G         +     +D    +I     ++ KP  
Sbjct: 1   MNHNRVVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLVSGEIVKRAQYYVKPEH 54

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           D +       +TGITP+K  + G   AE  + + + F   N     +     DD   R  
Sbjct: 55  DEV-SLFCSQLTGITPRKIEKQGRPLAEVIKSMVKNFGGANKIYAAW---GRDDRVLREE 110

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
                 D     + N  + + + + ++    
Sbjct: 111 CQAKGIDMPFNEFINLATLYRIQNRLKDKRI 141


>gi|260582581|ref|ZP_05850371.1| ribonuclease T [Haemophilus influenzae NT127]
 gi|319775811|ref|YP_004138299.1| ribonuclease T [Haemophilus influenzae F3047]
 gi|329123653|ref|ZP_08252213.1| ribonuclease T [Haemophilus aegyptius ATCC 11116]
 gi|260094392|gb|EEW78290.1| ribonuclease T [Haemophilus influenzae NT127]
 gi|317450402|emb|CBY86618.1| ribonuclease T [Haemophilus influenzae F3047]
 gi|327469852|gb|EGF15317.1| ribonuclease T [Haemophilus aegyptius ATCC 11116]
          Length = 229

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 55/198 (27%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  +P +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q        +     II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +M                            A     +   AH 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAKLFCYMVNH 203


>gi|227875987|ref|ZP_03994110.1| exoribonuclease II [Mobiluncus mulieris ATCC 35243]
 gi|227843519|gb|EEJ53705.1| exoribonuclease II [Mobiluncus mulieris ATCC 35243]
          Length = 205

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAV 58
           +T+  V  D E  G D+A D   +   +  D     +++      KP+   L +      
Sbjct: 5   LTDALVWVDCEMTGLDLATDELIEIGVIVTDFNLNPLDTGIDLLIKPSQTALDNMGDFVR 64

Query: 59  FIT---GITPQKALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
            +    G+  +      V EA  +    + +F        +  N++  D  + +   
Sbjct: 65  EMHTKSGLLDELDHGLPVTEAARQVLEYVQRFVPEAGKAPLAGNSVGTDKTFLKKQM 121


>gi|148546369|ref|YP_001266471.1| ribonuclease T [Pseudomonas putida F1]
 gi|166200017|sp|A5VZH7|RNT_PSEP1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|148510427|gb|ABQ77287.1| RNAse T [Pseudomonas putida F1]
 gi|313497451|gb|ADR58817.1| Ribonuclease T [Pseudomonas putida BIRD-1]
          Length = 224

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 63/215 (29%), Gaps = 31/215 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVF-FCKPADDYL 52
           M   F     V+ D ET G + A D   + A V +  D +         F   +P +   
Sbjct: 22  MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGAN 81

Query: 53  PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +P A+  TGI        A+ +     +  R + +          I+  +N  FD  + 
Sbjct: 82  IEPAALEFTGIKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 141

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                RN      +   +      L  +       +          DG            
Sbjct: 142 NAAVARNDLKRNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGR----------- 190

Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201
                  AH A+ D   T  L   I  +  ++  +
Sbjct: 191 ------EAHSARYDTEKTAELFCGIVNRWKEMGGW 219


>gi|77460741|ref|YP_350248.1| ribonuclease T [Pseudomonas fluorescens Pf0-1]
 gi|123603449|sp|Q3K7J7|RNT_PSEPF RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|77384744|gb|ABA76257.1| ribonuclease T [Pseudomonas fluorescens Pf0-1]
          Length = 224

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 62/208 (29%), Gaps = 28/208 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A   + +D +     + T  F  +P +    +P A+  TG
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTIAMDEKGFVYPDHTYFFRVEPFEGANVEPAALEFTG 91

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          I+  +N  FD  +      R    
Sbjct: 92  IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 151

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L  +       +                     A     +   AH 
Sbjct: 152 RNPFHPFSSFDTATLAGLAYGQTVLAKACQ-----------------AADIDFDGREAHS 194

Query: 177 AKADVYATLALVWLIREK--KPKLFEYL 202
           A+ D   T  L   I  +  +   +E  
Sbjct: 195 ARYDTEKTAELFCGIVNRWKQMGGWEDF 222


>gi|26987821|ref|NP_743246.1| ribonuclease T [Pseudomonas putida KT2440]
 gi|37999414|sp|Q88NW8|RNT_PSEPK RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|24982520|gb|AAN66710.1|AE016299_6 ribonuclease T [Pseudomonas putida KT2440]
          Length = 203

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 63/215 (29%), Gaps = 31/215 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVF-FCKPADDYL 52
           M   F     V+ D ET G + A D   + A V +  D +         F   +P +   
Sbjct: 1   MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGAN 60

Query: 53  PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +P A+  TGI        A+ +     +  R + +          I+  +N  FD  + 
Sbjct: 61  IEPAALEFTGIKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 120

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                RN      +   +      L  +       +          DG            
Sbjct: 121 NAAVARNDLKRNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGR----------- 169

Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201
                  AH A+ D   T  L   I  +  ++  +
Sbjct: 170 ------EAHSARYDTEKTAELFCGIVNRWKEMGGW 198


>gi|226943525|ref|YP_002798598.1| ribonuclease T [Azotobacter vinelandii DJ]
 gi|226718452|gb|ACO77623.1| ribonuclease T [Azotobacter vinelandii DJ]
          Length = 202

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 69/217 (31%), Gaps = 35/217 (16%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYL 52
           M + F     V+ D ET G + A D   + A + +    + +   E +  F  +P +   
Sbjct: 1   MAHRFRGYLPVVVDVETGGFNSATDALLEIAAITIGMDEQGLLFPEHSHFFRVEPFEGAN 60

Query: 53  PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +  A+  TGI        A+ +     E  R + +          I+  +N  FD  + 
Sbjct: 61  IEAAALEFTGIKLDHPLRMAVSEEHALQEIFRGVRKAVKSHGCKRAILVGHNSSFDLAFL 120

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R       +      S +D   +    Y  +                 L     +
Sbjct: 121 NAAVARCDIKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQS 161

Query: 167 NGIEHV--NAHDAKADVYATLALVWLIREKKPKLFEY 201
            GIE     AH A+ D   T  L   I  +  ++  +
Sbjct: 162 AGIEFDGREAHSARYDTEKTAELFCGIVNRWKEMGGW 198


>gi|297622496|ref|YP_003703930.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
 gi|297163676|gb|ADI13387.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
          Length = 224

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 44/176 (25%), Gaps = 21/176 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET G     D P     V V     ++ +    +            A  + G+T
Sbjct: 42  YVAVDLETTGLRPRWDAPLSVGWVLVRAGAIELAT--ARYAVLRAKREVAQSAT-VHGLT 98

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                     E   +        +    ++ ++                F D        
Sbjct: 99  DDAVADG---EDAAAVLAELLAVLAGRVLVAHHAAIELR----------FLDRLCREHFG 145

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           G     ++D +      +                +L  +    G+    AH A +D
Sbjct: 146 GPLLVRVVDTLALAARSAERHGAVDENA-----LRLHAVRARYGLPRYAAHSALSD 196


>gi|266624851|ref|ZP_06117786.1| exonuclease family protein [Clostridium hathewayi DSM 13479]
 gi|288863268|gb|EFC95566.1| exonuclease family protein [Clostridium hathewayi DSM 13479]
          Length = 330

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 55/207 (26%), Gaps = 28/207 (13%)

Query: 2   TNHFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
             ++++ D E      G++  +D       +   VR+D + ++I        +P      
Sbjct: 1   MKNYIVLDLEWNQSPDGKEGTIDHFPFEIIEIGAVRLDEERKEIGEF-RRLIRPRVYPQM 59

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +T +   +  R+G         I  F        I       D    +      
Sbjct: 60  HYRISEVTHMDMAELERNGETFETV---IRDFLEWCGDDCIFCTWGSMDLTELQRNMVYY 116

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             +              L  +++                DG     L       GI    
Sbjct: 117 GVEIPFDKPLLYYDVQKLYSLLQ---------------GDGKQKQSLDITVEELGIREDR 161

Query: 174 A-HDAKADVYATLALVWLIREKKPKLF 199
             H A  D + T  ++  +  ++   +
Sbjct: 162 PFHRALDDAHYTGRVMAAMDFERVLEY 188


>gi|114320658|ref|YP_742341.1| oligoribonuclease [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311672|sp|Q0A8I6|ORN_ALHEH RecName: Full=Oligoribonuclease
 gi|114227052|gb|ABI56851.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 193

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           ++ V  D E  G D   DR  + A +  D Q   +    V   + ++  L   D      
Sbjct: 6   HNLVWLDLEMTGLDPDTDRIIEIATLVTDSQLNILAEGPVLAVRQSEQALAAMDEWNTRT 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   ++     + EA        F           +  N+I  D  +      R   
Sbjct: 66  HGESGLIERVRASHLDEAAAEAETLAFLRRWVPERASPMCGNSICQDRRFLYRYMPRLEA 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 WFHYR 130


>gi|320010661|gb|ADW05511.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           flavogriseus ATCC 33331]
          Length = 202

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 33/200 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  +A D   + A +  D +   +        +P D  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60

Query: 60  -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            +    G+  + A    + +AE      I +    P    +  N++  D  +        
Sbjct: 61  QMHTASGLLDELAGGTTLADAEERVLAYIREHVKEPGKAPLCGNSVGTDRGFLAR----- 115

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D             D+  V      + P                    A  N  E   
Sbjct: 116 --DMPSLEGFLHYRIVDVSSVKELARRWYPR-------------------AYFNSPEKNG 154

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A AD+  ++  +   R+
Sbjct: 155 NHRALADIRDSITELRYYRD 174


>gi|266706193|gb|ACY78400.1| OrnA [Streptomyces chattanoogensis]
          Length = 206

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 33/200 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  +A D   + A +  D +   +        +P  + L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLANDALIEVAALVTDSELNVLGDGVDVVIRPPAEALTTMPEVVR 60

Query: 60  -IT---GITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            +    G+  +      +   EA+    I Q    P    +  N++  D  +        
Sbjct: 61  AMHTASGLLDELDRGTTLEDAEAQVLAYIRQHVPEPGKAPLCGNSVGTDRGF-------L 113

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D             D+  V      + P                    A  N  +   
Sbjct: 114 LRDMPTLENYLHYRIVDVSSVKELARRWYPR-------------------AYFNSPDKSG 154

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A AD+  ++A +   RE
Sbjct: 155 NHRALADIRESIAELRYYRE 174


>gi|225717126|gb|ACO14409.1| Oligoribonuclease, mitochondrial precursor [Esox lucius]
          Length = 207

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 15/131 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYL 52
           M    V  D E  G D+  D+  + A +  D +           I +T+       D   
Sbjct: 10  MKQRMVWVDLEMTGLDIEKDQIIEMACIITDSELNVLAGGPNLIINTTDELLDGMDDWCK 69

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNI 109
                  +T    Q      +   +       F      P  C +  N++  D  +    
Sbjct: 70  EHHGNSGLT----QAVRNSKITLQQAEYEFLSFIRQHTPPGQCPLAGNSVHADKKFLDKY 125

Query: 110 FYRNFYDSYRW 120
             +  +  +  
Sbjct: 126 MPQFMHHLHYR 136


>gi|227488080|ref|ZP_03918396.1| DNA polymerase III epsilon subunit (exonuclease) [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091942|gb|EEI27254.1| DNA polymerase III epsilon subunit (exonuclease) [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 427

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 27/192 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   + +     Q A V+V    + ++        P        E  +  
Sbjct: 251 KPKFVAVDFET--ANRSSRSACQIAMVKV-EYGQIVDRFSTLLKPPPGHDEF--EFTYFH 305

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI+ +               I  F        +  +N  FD     +       DSY  +
Sbjct: 306 GISARDVADAP-SWKFVEPYIRAFVDR---LPVYAHNASFDRGVWVS------MDSYYGT 355

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                  +      + +     +          A  F+L              H A +D 
Sbjct: 356 RTLPEEFYCSYRTAKRLIPGLENYKLPTVTKAIAPWFRLDH------------HRADSDA 403

Query: 182 YATLALVWLIRE 193
            A   +V  ++ 
Sbjct: 404 EACALIVIGLQM 415


>gi|229047208|ref|NP_935870.2| oligoribonuclease [Vibrio vulnificus YJ016]
 gi|229220645|ref|NP_760214.2| oligoribonuclease [Vibrio vulnificus CMCP6]
 gi|320155081|ref|YP_004187460.1| 3'-to-5' oligoribonuclease [Vibrio vulnificus MO6-24/O]
 gi|29611786|sp|Q8DCV6|ORN_VIBVU RecName: Full=Oligoribonuclease
 gi|41017432|sp|Q7MGZ7|ORN_VIBVY RecName: Full=Oligoribonuclease
 gi|319930393|gb|ADV85257.1| 3'-to-5' oligoribonuclease (orn) [Vibrio vulnificus MO6-24/O]
 gi|319999184|gb|AAO09741.2| Oligoribonuclease [Vibrio vulnificus CMCP6]
          Length = 181

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D  + +  + A +  D +   +    V     +++ L   D      
Sbjct: 6   QNLIWIDLEMTGLDPDVHKIIEIASIVTDSELNILAEGPVLAIHQSEEELAKMDEWCTNT 65

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+  ++     + E E   +   F           I  N+I  D  +         
Sbjct: 66  HTGSGL-VERVRGSQITEQEAVEQTIAFLEKWVPKGVSPICGNSIGQDRRFLYRHMPELE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 GYFHYR 130


>gi|88811452|ref|ZP_01126707.1| ribonuclease T [Nitrococcus mobilis Nb-231]
 gi|88791341|gb|EAR22453.1| ribonuclease T [Nitrococcus mobilis Nb-231]
          Length = 222

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 55/199 (27%), Gaps = 28/199 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK--IESTEVFFCKPADDYLPDPEAVFIT 61
           V+ D ET G + + D   Q A   VR+D         +      +P D    DP+++   
Sbjct: 28  VVVDIETGGLNASTDALLQLAAVIVRMDEDKRVFPAGTYST-HVEPFDGANIDPKSLEFN 86

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            I P   LR    E E  R I +              I+  +N  FD  +      R   
Sbjct: 87  RIDPNHPLRMAKPEEEALRHIFRPIRREIRETGCTRAILVGHNSWFDLCFLNAAVARTGI 146

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                     A     +   AH
Sbjct: 147 RRNPFHPFTSFDTATLGGLAFGQTVLARAVK-----------------ASGASWDGREAH 189

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  +
Sbjct: 190 SAIYDAEKTAELFCTIVNR 208


>gi|304437456|ref|ZP_07397414.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369506|gb|EFM23173.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 219

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 60/200 (30%), Gaps = 29/200 (14%)

Query: 6   VIYDYETF--GRDVA------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           ++ D E    G++             +   VR++  + + +  + + C   +  +     
Sbjct: 4   IVVDLEMNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVC--PEYGMVKKHI 61

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYD 116
             +TGIT +K          F+   H F           Y+    D    R    R    
Sbjct: 62  TELTGITQEKVAGHPA----FADSFHAFVVWIGEAETKIYSWSMSDIKQLRKEC-RLKLP 116

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
            +  +W +           R +        +    +  A    L  +         + H 
Sbjct: 117 DFDVTWLD----------ARWVDLQQEFDDRLGLHNSLALKHALGAMGRRF---EGSQHS 163

Query: 177 AKADVYATLALVWLIREKKP 196
           A AD   T A++ L+++   
Sbjct: 164 ALADAVNTSAVLALMQDDAK 183


>gi|15609648|ref|NP_217027.1| oligoribonuclease [Mycobacterium tuberculosis H37Rv]
 gi|15842039|ref|NP_337076.1| oligoribonuclease [Mycobacterium tuberculosis CDC1551]
 gi|31793691|ref|NP_856184.1| oligoribonuclease [Mycobacterium bovis AF2122/97]
 gi|121638393|ref|YP_978617.1| oligoribonuclease [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662347|ref|YP_001283870.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra]
 gi|148823708|ref|YP_001288462.1| oligoribonuclease [Mycobacterium tuberculosis F11]
 gi|167966612|ref|ZP_02548889.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra]
 gi|215404448|ref|ZP_03416629.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987]
 gi|215412277|ref|ZP_03421037.1| oligoribonuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|215427894|ref|ZP_03425813.1| oligoribonuclease [Mycobacterium tuberculosis T92]
 gi|215431457|ref|ZP_03429376.1| oligoribonuclease [Mycobacterium tuberculosis EAS054]
 gi|215446761|ref|ZP_03433513.1| oligoribonuclease [Mycobacterium tuberculosis T85]
 gi|218754244|ref|ZP_03533040.1| oligoribonuclease [Mycobacterium tuberculosis GM 1503]
 gi|219558511|ref|ZP_03537587.1| oligoribonuclease [Mycobacterium tuberculosis T17]
 gi|224990887|ref|YP_002645574.1| oligoribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798409|ref|YP_003031410.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 1435]
 gi|254232640|ref|ZP_04925967.1| oligoribonuclease orn [Mycobacterium tuberculosis C]
 gi|254366813|ref|ZP_04982855.1| oligoribonuclease orn [Mycobacterium tuberculosis str. Haarlem]
 gi|254551558|ref|ZP_05142005.1| oligoribonuclease [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187518|ref|ZP_05764992.1| oligoribonuclease [Mycobacterium tuberculosis CPHL_A]
 gi|260201636|ref|ZP_05769127.1| oligoribonuclease [Mycobacterium tuberculosis T46]
 gi|260205826|ref|ZP_05773317.1| oligoribonuclease [Mycobacterium tuberculosis K85]
 gi|289444042|ref|ZP_06433786.1| oligoribonuclease orn [Mycobacterium tuberculosis T46]
 gi|289448156|ref|ZP_06437900.1| oligoribonuclease orn [Mycobacterium tuberculosis CPHL_A]
 gi|289553697|ref|ZP_06442907.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 605]
 gi|289570671|ref|ZP_06450898.1| oligoribonuclease orn [Mycobacterium tuberculosis T17]
 gi|289575216|ref|ZP_06455443.1| oligoribonuclease orn [Mycobacterium tuberculosis K85]
 gi|289746293|ref|ZP_06505671.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987]
 gi|289751120|ref|ZP_06510498.1| oligoribonuclease orn [Mycobacterium tuberculosis T92]
 gi|289754620|ref|ZP_06513998.1| oligoribonuclease orn [Mycobacterium tuberculosis EAS054]
 gi|289758643|ref|ZP_06518021.1| oligoribonuclease orn [Mycobacterium tuberculosis T85]
 gi|289762679|ref|ZP_06522057.1| oligoribonuclease orn [Mycobacterium tuberculosis GM 1503]
 gi|294994382|ref|ZP_06800073.1| oligoribonuclease [Mycobacterium tuberculosis 210]
 gi|297635119|ref|ZP_06952899.1| oligoribonuclease [Mycobacterium tuberculosis KZN 4207]
 gi|297732110|ref|ZP_06961228.1| oligoribonuclease [Mycobacterium tuberculosis KZN R506]
 gi|298525983|ref|ZP_07013392.1| oligoribonuclease orn [Mycobacterium tuberculosis 94_M4241A]
 gi|306776784|ref|ZP_07415121.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu001]
 gi|306780550|ref|ZP_07418887.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu002]
 gi|306785311|ref|ZP_07423633.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu003]
 gi|306789665|ref|ZP_07427987.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu004]
 gi|306793992|ref|ZP_07432294.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu005]
 gi|306798387|ref|ZP_07436689.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu006]
 gi|306804267|ref|ZP_07440935.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu008]
 gi|306807692|ref|ZP_07444360.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu007]
 gi|306968664|ref|ZP_07481325.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu009]
 gi|306972895|ref|ZP_07485556.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu010]
 gi|307080608|ref|ZP_07489778.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu011]
 gi|307085195|ref|ZP_07494308.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu012]
 gi|313659444|ref|ZP_07816324.1| oligoribonuclease [Mycobacterium tuberculosis KZN V2475]
 gi|54038785|sp|P65598|ORN_MYCBO RecName: Full=Oligoribonuclease
 gi|54041582|sp|P65597|ORN_MYCTU RecName: Full=Oligoribonuclease
 gi|166216268|sp|A1KLK6|ORN_MYCBP RecName: Full=Oligoribonuclease
 gi|166216271|sp|A5U5K8|ORN_MYCTA RecName: Full=Oligoribonuclease
 gi|3261780|emb|CAB08931.1| OLIGORIBONUCLEASE ORN [Mycobacterium tuberculosis H37Rv]
 gi|13882317|gb|AAK46890.1| oligoribonuclease, putative [Mycobacterium tuberculosis CDC1551]
 gi|31619284|emb|CAD97400.1| PROBABLE OLIGORIBONUCLEASE ORN [Mycobacterium bovis AF2122/97]
 gi|121494041|emb|CAL72519.1| Probable oligoribonuclease orn [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124601699|gb|EAY60709.1| oligoribonuclease orn [Mycobacterium tuberculosis C]
 gi|134152323|gb|EBA44368.1| oligoribonuclease orn [Mycobacterium tuberculosis str. Haarlem]
 gi|148506499|gb|ABQ74308.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra]
 gi|148722235|gb|ABR06860.1| oligoribonuclease orn [Mycobacterium tuberculosis F11]
 gi|224774000|dbj|BAH26806.1| oligoribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319912|gb|ACT24515.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 1435]
 gi|289416961|gb|EFD14201.1| oligoribonuclease orn [Mycobacterium tuberculosis T46]
 gi|289421114|gb|EFD18315.1| oligoribonuclease orn [Mycobacterium tuberculosis CPHL_A]
 gi|289438329|gb|EFD20822.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 605]
 gi|289539647|gb|EFD44225.1| oligoribonuclease orn [Mycobacterium tuberculosis K85]
 gi|289544425|gb|EFD48073.1| oligoribonuclease orn [Mycobacterium tuberculosis T17]
 gi|289686821|gb|EFD54309.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987]
 gi|289691707|gb|EFD59136.1| oligoribonuclease orn [Mycobacterium tuberculosis T92]
 gi|289695207|gb|EFD62636.1| oligoribonuclease orn [Mycobacterium tuberculosis EAS054]
 gi|289710185|gb|EFD74201.1| oligoribonuclease orn [Mycobacterium tuberculosis GM 1503]
 gi|289714207|gb|EFD78219.1| oligoribonuclease orn [Mycobacterium tuberculosis T85]
 gi|298495777|gb|EFI31071.1| oligoribonuclease orn [Mycobacterium tuberculosis 94_M4241A]
 gi|308214844|gb|EFO74243.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu001]
 gi|308326616|gb|EFP15467.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu002]
 gi|308330038|gb|EFP18889.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu003]
 gi|308333882|gb|EFP22733.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu004]
 gi|308337682|gb|EFP26533.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu005]
 gi|308341363|gb|EFP30214.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu006]
 gi|308345880|gb|EFP34731.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu007]
 gi|308349155|gb|EFP38006.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu008]
 gi|308353779|gb|EFP42630.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu009]
 gi|308357722|gb|EFP46573.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu010]
 gi|308361662|gb|EFP50513.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu011]
 gi|308365253|gb|EFP54104.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu012]
 gi|323718919|gb|EGB28073.1| oligoribonuclease orn [Mycobacterium tuberculosis CDC1551A]
 gi|326904125|gb|EGE51058.1| oligoribonuclease orn [Mycobacterium tuberculosis W-148]
 gi|328458177|gb|AEB03600.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 4207]
          Length = 215

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 26/163 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M +  V  D E  G D+  D+  + A +  D     +            D +   +   +
Sbjct: 1   MQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGV--------DVVMHADDAAL 52

Query: 61  TGITP---QKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
           +G+     +   R G++             EA     I++    P T  +  N+I  D  
Sbjct: 53  SGMIDVVAEMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRA 112

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
           +          DS+        S    L        +     +
Sbjct: 113 FI--ARDMPTLDSFLHYRMIDVSSIKELCRRWYPRIYFGQPPK 153


>gi|307132771|ref|YP_003884787.1| oligoribonuclease [Dickeya dadantii 3937]
 gi|306530300|gb|ADN00231.1| oligoribonuclease [Dickeya dadantii 3937]
          Length = 183

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 34/126 (26%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G D   DR  + A +  D     +           D    L D   V  
Sbjct: 8   NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNVLAEGPTLAVHQPDSQLALMDDWNVRT 67

Query: 61  T---GITP---QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+       A  +G  E E      Q +       I  N+I  D  +         
Sbjct: 68  HTASGLVDRVKASAFDEGAAERETIA-FLQQWVPAGKSPICGNSIGQDRRFLFRYMPELE 126

Query: 115 YDSYRW 120
              +  
Sbjct: 127 AYFHYR 132


>gi|302551620|ref|ZP_07303962.1| oligoribonuclease [Streptomyces viridochromogenes DSM 40736]
 gi|302469238|gb|EFL32331.1| oligoribonuclease [Streptomyces viridochromogenes DSM 40736]
          Length = 200

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 57/206 (27%), Gaps = 45/206 (21%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  ++ D   + A +  D +   +        +P D  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDRALETMPEVVR 60

Query: 60  ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
                 Q     G+             E +    + +F   P    +  N++  D  +  
Sbjct: 61  ------QMHTASGLLAELPDGTTLRDAEEQVLTYVREFVKEPGKAPLCGNSVGTDRGF-- 112

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
                   D             D+  +      + P                    A  N
Sbjct: 113 -----LLRDMPTLEDYLHYRIVDVSSIKELARRWYPR-------------------AYFN 148

Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
             +    H A AD+  ++A +   RE
Sbjct: 149 SPQKNGNHRALADIRESIAELRYYRE 174


>gi|227877226|ref|ZP_03995299.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01]
 gi|256842782|ref|ZP_05548270.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256848912|ref|ZP_05554346.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US]
 gi|293380675|ref|ZP_06626725.1| exonuclease [Lactobacillus crispatus 214-1]
 gi|312977700|ref|ZP_07789447.1| exonuclease [Lactobacillus crispatus CTV-05]
 gi|227863082|gb|EEJ70528.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01]
 gi|256614202|gb|EEU19403.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256714451|gb|EEU29438.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US]
 gi|290922772|gb|EFD99724.1| exonuclease [Lactobacillus crispatus 214-1]
 gi|310895439|gb|EFQ44506.1| exonuclease [Lactobacillus crispatus CTV-05]
          Length = 177

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   +     A V V    + ++               D   + +  I
Sbjct: 2   NFIAMDFET--ANHYPESACSLALVMVRNN-KIVDRFYTV---INPQMPFDARNIQVHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE    I +        ++  +N RFD    R    R   +       
Sbjct: 56  TAEDVKNAP-TMAEVWPHIKEL--YQPGMLVAAHNARFDTNVMRQSLARYGIEEP----- 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                          Y            +      KL  ++ A  +E  + H+A +D  A
Sbjct: 108 --------------HYLVIDTLASSKLLEPELPDHKLDTVSEALNVELWHHHNALSDSEA 153

Query: 184 TLALVWLIREK 194
              ++    E+
Sbjct: 154 CAGILIKQEEQ 164


>gi|226355452|ref|YP_002785192.1| DNA polymerase III subunit [Deinococcus deserti VCD115]
 gi|226317442|gb|ACO45438.1| putative DNA-directed DNA polymerase (DNA polymerase III, subunit)
           [Deinococcus deserti VCD115]
          Length = 204

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 25/195 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             V  D+E+ G + A D   Q     +D     +      + +P        + V I G+
Sbjct: 12  SLVALDFESTGMNPAHDEVIQVGLAPLDAGAVDLGGAWAQWVRPT--RPFRADTVAIHGL 69

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           + +            S    +  +     ++  +    +  + +    R           
Sbjct: 70  SYELLQEAPA----ISTVRLELGARLQGRVLVAHYAALELGFLKRWGLR----------- 114

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              +  D L +  A         +  +      ++ L  LA   G+E    HDA AD   
Sbjct: 115 -PAATLDTLMLALA-------LDRQSTATARRDAYTLSALARRFGVEVYGEHDALADALI 166

Query: 184 TLALVWLIREKKPKL 198
           T  +  ++  +    
Sbjct: 167 TAQVFLVLAHELETQ 181


>gi|290512276|ref|ZP_06551643.1| oligoribonuclease [Klebsiella sp. 1_1_55]
 gi|289775271|gb|EFD83272.1| oligoribonuclease [Klebsiella sp. 1_1_55]
          Length = 199

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G D   DR  + A +  D     +          +D    L D   V  
Sbjct: 24  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDEWNVRT 83

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+   +     V E +      +F           I  N+I  D  +      +  
Sbjct: 84  HTGSGL-VDRVKASAVSEHDAELATIEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPQLE 142

Query: 115 YDSYRW 120
              +  
Sbjct: 143 AYFHYR 148


>gi|297711385|ref|XP_002832336.1| PREDICTED: three prime repair exonuclease 2-like [Pongo abelii]
          Length = 313

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 60/208 (28%), Gaps = 32/208 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47
             FV  D E  G        A+ +   V          D          ++   +  C  
Sbjct: 85  ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPERDESGALVLPRVLDKLTLCMC-- 142

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDD 103
             +     +A  ITG++ +   R      +    R +  F S      C++ +N   +D 
Sbjct: 143 -PERPFTAKASEITGLSSEGLARCRKSGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDF 201

Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
                   R      R +        D L  +R +      G +      G   + L  L
Sbjct: 202 PLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGSL 252

Query: 164 AL-ANGIEHVNAHDAKADVYATLALVWL 190
                  E   AH A+ DV+  L +   
Sbjct: 253 FHRYFRAEPSAAHSAEGDVHTLLLIFLH 280


>gi|148977600|ref|ZP_01814176.1| ribonuclease T [Vibrionales bacterium SWAT-3]
 gi|145963115|gb|EDK28383.1| ribonuclease T [Vibrionales bacterium SWAT-3]
          Length = 211

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 63/206 (30%), Gaps = 31/206 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   +  ++D   + +  ST  F  +P +    +  A+   G
Sbjct: 20  VVIDVETAGFNAETDALLEICAITLKMDENGDLQPASTLHFHIEPFEGANIEQAALDFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E E  + I++        S  +  I+  +N  FD  +      R   
Sbjct: 80  IKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTAALSGLAYGQTV-------------LAKACRTAGMEFDNKE 180

Query: 174 AHDAKADVYATLALVWLIREKKPKLF 199
           AH A  D   T  L   I  K    +
Sbjct: 181 AHSALYDTQKTTELFCGIVNKVESPW 206


>gi|119960742|ref|YP_948285.1| DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1]
 gi|119947601|gb|ABM06512.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens
           TC1]
          Length = 336

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 50/188 (26%), Gaps = 27/188 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F   D+ET   +     P      +V R    +E        P +    +     I
Sbjct: 1   MALDFTAIDFET--ANGFRGSPCSVGLSKV-RGGVVVEEASWLMRPPENHDHFEFHNTRI 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E    I  F       ++  +N  FD    R+    +       
Sbjct: 58  HGIRAEDVAGRPR-FGELFPEIGAFI---GDDVLAAHNAAFDLGVIRSGLEVSGL----- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +D +  +                     S  L   A   G+  VN HDA  D
Sbjct: 109 ----AGPAYDYVCTVMLSRRCY-----------SLVSNSLPYAAEEAGVPLVNHHDAAED 153

Query: 181 VYATLALV 188
             A   ++
Sbjct: 154 ARACAGIL 161


>gi|187477876|ref|YP_785900.1| oligoribonuclease [Bordetella avium 197N]
 gi|123515337|sp|Q2L2P5|ORN_BORA1 RecName: Full=Oligoribonuclease
 gi|115422462|emb|CAJ48987.1| oligoribonuclease [Bordetella avium 197N]
          Length = 181

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 13/128 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
           N  V  D E  G D   +R  + A V  +     +    V     +D  L   EA+    
Sbjct: 6   NRLVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVVHQSDSVL---EAMDNWN 62

Query: 59  -FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYR 112
               G +    K     + EA+  +++  F S         +  N I  D  +       
Sbjct: 63  KSTHGKSGLIDKVRASTLTEAQAEQQLIDFLSQYVPAGKSPLCGNTISQDRRFMFAYMPN 122

Query: 113 NFYDSYRW 120
                +  
Sbjct: 123 LERFFHYR 130


>gi|227889650|ref|ZP_04007455.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii ATCC
           33200]
 gi|268319793|ref|YP_003293449.1| DNA polymerase III epsilon subunit [Lactobacillus johnsonii FI9785]
 gi|227849793|gb|EEJ59879.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii ATCC
           33200]
 gi|262398168|emb|CAX67182.1| DNA polymerase III epsilon subunit [Lactobacillus johnsonii FI9785]
          Length = 177

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET             A V V    E ++               D   + I GI
Sbjct: 2   NFTAMDFETANSHPESA--CSLALVMVRNN-EIVDRFYTV---INPQMPFDGRNIRIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE   +I +        ++  +N RFD         R    +  +   
Sbjct: 56  TAEDIKNAP-TMAEVWPKIKKL--YQPGMLVAAHNARFDCRVMEKSLARYNIPAPHY--- 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L   +A   +               + KL  ++ A  I   + H+A +D  A
Sbjct: 110 ---FAIDTLATSKAFEPYL-------------PNHKLDTVSEALNINLWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CAGIL 158


>gi|312872015|ref|ZP_07732095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2062A-h1]
 gi|312873705|ref|ZP_07733751.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653310|ref|ZP_07906232.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners ATCC 55195]
 gi|325911899|ref|ZP_08174303.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 143-D]
 gi|311090805|gb|EFQ49203.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2052A-d]
 gi|311092468|gb|EFQ50832.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2062A-h1]
 gi|315489235|gb|EFU78875.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners ATCC 55195]
 gi|325476405|gb|EGC79567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 143-D]
          Length = 177

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET   +   D     A V V    + I+S              D   + I GI
Sbjct: 2   NFTAMDFET--ANRHYDSACSLALVLVRDN-KIIDSFYTV---INPQMPFDKNNIKIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T            E   +I   F      ++  +N RFD    +    +           
Sbjct: 56  TANDVKDAP-TMDEVWPKIRLLFQ--PGMLVVAHNARFDCNVMKKSLKKY---------- 102

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    ++    Y          +      +++L  ++    I+  + H+A +D  A
Sbjct: 103 ---------NIAEPHYLTIDTLATSRALIPNLKNYRLDTVSNQLNIDLWHHHNALSDSEA 153

Query: 184 TLALVWLIREK 194
              ++    ++
Sbjct: 154 CAEILIKQNQQ 164


>gi|294625309|ref|ZP_06703946.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600378|gb|EFF44478.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 194

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58
           +  +  D E  G D   D   + A +  D Q   +    E+    P +      EA+   
Sbjct: 9   DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDEW 64

Query: 59  --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
                  +   Q+ L   V  A+   +   F S         +  N+I  D  +      
Sbjct: 65  NRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMS 124

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 125 RLERYFHYR 133


>gi|261340232|ref|ZP_05968090.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316]
 gi|288317749|gb|EFC56687.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316]
          Length = 220

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 68/265 (25%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET           + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   VIDTETCDL---QGGIVEVASVDV-VDGQIV-NPMSHLVRP--DRPISPQAMAIHRITES 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E     H       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-EVISHYH------GSPWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R ++          S      S KL         E ++ H A  D Y T A
Sbjct: 97  --ICTMKLARRLWPGIK-----YSNMALYKSRKLSVQTP----EGLHHHRALYDCYITAA 145

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246
           L+  I        E +     +  L                  F   +     +A VA +
Sbjct: 146 LLIDIMNTSGWTPEDMATITGRPALLT---------------TFTFGKYRGKAVAEVADN 190

Query: 247 -PRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +          +   L  
Sbjct: 191 DPGYLRWLYNNLDRMSPELRLTLKH 215


>gi|146292700|ref|YP_001183124.1| ribonuclease T [Shewanella putrefaciens CN-32]
 gi|166200020|sp|A4Y5U2|RNT_SHEPC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|145564390|gb|ABP75325.1| RNAse T [Shewanella putrefaciens CN-32]
          Length = 224

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 61/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D +    I+ T  F  +P +    +P A+   G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTLLKMDDEGMLGIDKTLHFHIEPFEGANLEPAALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIH------QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I       Q  +  + CII  +N  FD  +      R    
Sbjct: 80  IDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVSKAIERCDLK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +       +   +      D                    AH 
Sbjct: 140 RSPFHPFATFDTATLAGLAIGHTVLAKACMMAGIPFDNK-----------------EAHS 182

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 183 ALYDTERTAELFCYIVNR 200


>gi|51594770|ref|YP_068961.1| oligoribonuclease [Yersinia pseudotuberculosis IP 32953]
 gi|153949964|ref|YP_001402615.1| oligoribonuclease [Yersinia pseudotuberculosis IP 31758]
 gi|229597226|ref|YP_001722527.2| oligoribonuclease [Yersinia pseudotuberculosis YPIII]
 gi|229597243|ref|YP_001870889.2| oligoribonuclease [Yersinia pseudotuberculosis PB1/+]
 gi|59798016|sp|Q66FC2|ORN_YERPS RecName: Full=Oligoribonuclease
 gi|166918641|sp|A7FMY7|ORN_YERP3 RecName: Full=Oligoribonuclease
 gi|51588052|emb|CAH19658.1| possible oligoribonuclease [Yersinia pseudotuberculosis IP 32953]
 gi|152961459|gb|ABS48920.1| oligoribonuclease [Yersinia pseudotuberculosis IP 31758]
          Length = 181

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVF 59
            N+ +  D E  G D   DR  + A +  D     +    V     + +   L D   V 
Sbjct: 5   QNNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVR 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++       + +   +  +F           I  N++  D  +        
Sbjct: 65  THTGSGL-VERVKTSPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EAYFHYR 130


>gi|307544322|ref|YP_003896801.1| oligoribonuclease [Halomonas elongata DSM 2581]
 gi|307216346|emb|CBV41616.1| oligoribonuclease [Halomonas elongata DSM 2581]
          Length = 197

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 13/128 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
              V  D E  G D   +R  + A +  D     +    V      D  L   EA+    
Sbjct: 13  QRLVWIDLEMTGLDPERERIIEVATLITDADLNVVAEGPVLAVHQPDALL---EAMDDWN 69

Query: 59  -FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYR 112
               G +   ++     +  AE  RR   F      P T  +  N++  D  +       
Sbjct: 70  QKTHGGSGLTERVRASAIDTAEAERRTLAFLHEHVAPGTSPMCGNSVHQDRRFLEREMPE 129

Query: 113 NFYDSYRW 120
                +  
Sbjct: 130 LLAFFHYR 137


>gi|83816222|ref|YP_444853.1| exonuclease, putative [Salinibacter ruber DSM 13855]
 gi|83757616|gb|ABC45729.1| exonuclease, putative [Salinibacter ruber DSM 13855]
          Length = 236

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 27/123 (21%), Gaps = 11/123 (8%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G     D   +     V  Q E +          A        A  + GIT 
Sbjct: 67  VFLDTETTGSGP-QDAVIELG--VVAAQGEVL--IHTLVAPLAP---VTRGARRVHGITD 118

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++           + R+    +             +D                     + 
Sbjct: 119 EELADAP-PFPTVADRLDTVLADAECVWTF--GPTYDRRMLLQTAALAECPETHRRIQDS 175

Query: 126 NSR 128
             R
Sbjct: 176 TWR 178


>gi|32491084|ref|NP_871338.1| ribonuclease T [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
 gi|30173142|sp|Q8D2L9|RNT_WIGBR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|25166291|dbj|BAC24481.1| rnt [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 215

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 62/212 (29%), Gaps = 26/212 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   D   + A +  R+D   + +I++   F   P         A+    
Sbjct: 21  VVIDVETAGFDPYRDALLEIAIITLRMDDNGFLRIDNKLHFNIIPTPGLNIKKSALKFNK 80

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  + E +  + I             +  ++  +N  FD  +  +   R+   
Sbjct: 81  IDPYNPFRAAINERKAIKEIFNTVRLGIKKQSCSKAVVVAHNAYFDHSFLMSAVDRSKIK 140

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L  ++      S                    +       +  AH 
Sbjct: 141 YNPFHSFSTFDTATLSGLVLGQTVLSKAC-----------------IIAGIEFNNNYAHS 183

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNK 208
           A  D   T  L   I  +  K+  +      K
Sbjct: 184 ALYDSKKTAELFCEIVNRWKKMGGWPIPKNRK 215


>gi|256026220|ref|ZP_05440085.1| YacC [Escherichia sp. 4_1_40B]
          Length = 293

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 32/108 (29%), Gaps = 11/108 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D    +  +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAKALEIG--LTDATGQVV-----FETRLKPTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           Q          + +R++       +  +I +N         +     +
Sbjct: 157 QALCGAP-SWTDVARQLRHAI--GDRPVIIFNARFDIRILKQTAAAHS 201


>gi|297802094|ref|XP_002868931.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314767|gb|EFH45190.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 227

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 73/238 (30%), Gaps = 33/238 (13%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            V +D ET      + +     +F  + V  R+ E++ES      +P D  +    +   
Sbjct: 10  IVFFDLETT-VPNKVGQYFHILEFGAIIVCPRKLEELESFTTLI-QPKDLSVVSIRSSRS 67

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT  K         + + +I+   +       G+N  RFD      I  +  +     
Sbjct: 68  DGITRAKVTNAP-SFEDVAEKIYGLLN--GRIWAGHNIRRFD-----CIRIKEAFAEIGK 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +    +   D L ++   +               A + K+  LA   G+     H +  D
Sbjct: 120 AAPEPSGIIDSLGLLSDKF------------GKRAGNMKMASLAAYFGLGVQK-HRSLDD 166

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           V   L ++               +    NQL       +       S    A R+   
Sbjct: 167 VRMNLEVLKHCATV------LFLESTLPNQLEGKWQSSSKIMTRSRSNYQIAQRAMPY 218


>gi|253991561|ref|YP_003042917.1| oligoribonuclease [Photorhabdus asymbiotica subsp. asymbiotica
          ATCC 43949]
 gi|211638439|emb|CAR67061.1| oligoribonuclease (ec 3.1.-.-) [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253783011|emb|CAQ86176.1| oligoribonuclease [Photorhabdus asymbiotica]
          Length = 181

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)

Query: 1  MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          M+    + +  D E  G D   DR  + A +  D     +  
Sbjct: 1  MSKSEHNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILAE 42


>gi|209696236|ref|YP_002264166.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
 gi|208010189|emb|CAQ80516.1| putative exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 210

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 20/188 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET   D         A +++ +   ++ +++    K    +    E+V I  +    
Sbjct: 33  IDCETTSLDPNHAELVSIAAIKIKQ--NRVLTSQTIHLKLRPPHNLTSESVKIHQLRHHD 90

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
               G+ E +   ++ QF    N  I+GY+         R+      +            
Sbjct: 91  L-SHGLSEKDAIIQLLQFI--GNRPIVGYHIHYDKKILDRSCLRHCGHPFPNR------- 140

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
              L++V    +      +             ++ ++    +     HDA  D  A   +
Sbjct: 141 ---LIEVCHIYHHKLECLLPNAYY-----DLSIEAISTHLDLPQAERHDALQDAIAAALI 192

Query: 188 VWLIREKK 195
              +    
Sbjct: 193 YVRLHYGD 200


>gi|294658997|ref|XP_461325.2| DEHA2F22594p [Debaryomyces hansenii CBS767]
 gi|202953536|emb|CAG89730.2| DEHA2F22594p [Debaryomyces hansenii]
          Length = 295

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 72/221 (32%), Gaps = 37/221 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPADDYL-PDPEAVF 59
              V  D E  G +V  D   +   +  D   E I+    E    +P +     +   V 
Sbjct: 88  KPLVWIDCEMTGLNVFQDHIIEICCIITDGNLEIIDEKGFESTVYQPKEVLDGMNEWCVN 147

Query: 60  ITGIT--PQKALRDG-----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
             G +    K L +       +E E    I Q+   PN  I+  N+I  D ++    F +
Sbjct: 148 QHGKSGLTAKILENPQCELSKIEDELLEYIKQYV-QPNKGIMAGNSIHMDKFFMMREFPK 206

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                +           D+  +M   Y  +P+ ++   +                     
Sbjct: 207 IIDYLHYR-------LIDVSSIMEVGYRHNPELMKLFPKKQ------------------- 240

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
             H A++D+  ++  +   ++   K      +   KN++ +
Sbjct: 241 GNHTARSDILESINQLKWYKQNYLKGEPETKELIEKNRILE 281


>gi|198438327|ref|XP_002132043.1| PREDICTED: similar to small fragment nuclease [Ciona intestinalis]
          Length = 205

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 7/122 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITGI 63
           V  D E  G DV  D   + A +  D     I   E      +D+ L   +   +   G 
Sbjct: 35  VWVDLEMTGLDVNKDHILEMACLVTDGNLNVIAQEEDLVIHQSDEVLNNMNEWCIEQHGR 94

Query: 64  T--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           +   +   +  +   +    + +F         C +  N I  D  +  +   R     +
Sbjct: 95  SGLTESVRKSMITLTQAEDIMLKFIQKHAPYKVCPLAGNTIHADKRFLDHYMPRFMDHLH 154

Query: 119 RW 120
             
Sbjct: 155 YR 156


>gi|146293452|ref|YP_001183876.1| exonuclease, RNase T and DNA polymerase III [Shewanella
           putrefaciens CN-32]
 gi|145565142|gb|ABP76077.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           putrefaciens CN-32]
          Length = 223

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 49/172 (28%), Gaps = 20/172 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D E  G D   D+      V ++     +E  +    +         ++  I GI     
Sbjct: 41  DLEMTGLDPLQDQILSIGLVPIEHGVIPLEGAQQKLVQIRGSV---GQSATIHGILDNHL 97

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
           ++   +E   +     F +     ++  ++   D  + +            +        
Sbjct: 98  VQAVTIEDAMAW----FIAKTRGRVLVAHHSPLDCRFLQQDILA------IYHQAVFLPS 147

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            D L + +         I+         S +L       G+   +AH A  D
Sbjct: 148 IDTLMLEKRRLLRGHHAIK-------EGSLRLGACRERYGLPVYSAHSALTD 192


>gi|311896098|dbj|BAJ28506.1| putative oligoribonuclease [Kitasatospora setae KM-6054]
          Length = 200

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 33/200 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G D+  D   + A +  D +   +        +P  + L   PE V 
Sbjct: 1   MNDRLVWIDCEMTGLDLDRDALIEVAALVTDSELNVLGEGVDVIIRPPAEALEGMPEVVR 60

Query: 60  -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            +    G+  + A    + EA+      + +         +  N++  D  +        
Sbjct: 61  QMHTASGLLDELADGLTMAEAQERVLAYVREHVPEAGRTPLCGNSVATDRGFLSR----- 115

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D             D+  +      + P                    A  N  +   
Sbjct: 116 --DMPELEGHLHYRIVDVSSIKELARRWYPR-------------------AYYNSPQKGG 154

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A AD+  ++A +   RE
Sbjct: 155 NHRALADIRESIAELRYYRE 174


>gi|270264991|ref|ZP_06193254.1| oligoribonuclease [Serratia odorifera 4Rx13]
 gi|270040925|gb|EFA14026.1| oligoribonuclease [Serratia odorifera 4Rx13]
          Length = 181

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|310765341|gb|ADP10291.1| Oligoribonuclease [Erwinia sp. Ejp617]
          Length = 187

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G +   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAE 42


>gi|223042138|ref|ZP_03612309.1| oligoribonuclease [Actinobacillus minor 202]
 gi|240947963|ref|ZP_04752389.1| oligoribonuclease [Actinobacillus minor NM305]
 gi|223017077|gb|EEF15518.1| oligoribonuclease [Actinobacillus minor 202]
 gi|240297719|gb|EER48180.1| oligoribonuclease [Actinobacillus minor NM305]
          Length = 181

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 9/128 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   +R  + A +  D+    +    V   K +D+ L       V 
Sbjct: 5   KQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLAIKQSDELLAKMSDWCVK 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++     + E     +   F           I  N++  D  +        
Sbjct: 65  THTENGL-IERVKNSKLTERAAELQTIDFLKRWVPKGASPICGNSVPQDKRFLYKYMPDL 123

Query: 114 FYDSYRWS 121
               +   
Sbjct: 124 ADYFHYRH 131


>gi|259907169|ref|YP_002647525.1| Oligoribonuclease [Erwinia pyrifoliae Ep1/96]
 gi|224962791|emb|CAX54246.1| Oligoribonuclease [Erwinia pyrifoliae Ep1/96]
 gi|283476976|emb|CAY72863.1| oligoribonuclease [Erwinia pyrifoliae DSM 12163]
          Length = 193

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G +   DR  + A +  D     +  
Sbjct: 12 NNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAE 48


>gi|283834783|ref|ZP_06354524.1| oligoribonuclease [Citrobacter youngae ATCC 29220]
 gi|291069029|gb|EFE07138.1| oligoribonuclease [Citrobacter youngae ATCC 29220]
          Length = 181

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|170728503|ref|YP_001762529.1| oligoribonuclease [Shewanella woodyi ATCC 51908]
 gi|169813850|gb|ACA88434.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC
           51908]
          Length = 181

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 8/129 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G +  +DR  + A +  D++   I    V     +D+ L   D      
Sbjct: 6   NNLIWVDLEMTGLEPDVDRIIEIATIVTDKELNIIAEGPVIAIHQSDEQLAKMDDWNKKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       EA+      +F S      +  +  N++  D  +   ++ R   
Sbjct: 66  HGESGLVDRVRSSQYSEAQAVAMTIEFLSQHVTKGSSPMCGNSVGQDRRFM-TLYMRELE 124

Query: 116 DSYRWSWDN 124
           D + +   +
Sbjct: 125 DFFHYRNID 133


>gi|296100932|ref|YP_003611078.1| oligoribonuclease [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055391|gb|ADF60129.1| oligoribonuclease [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 181

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G D   DR  + A +  D     +          +DD   L D   V  
Sbjct: 6   NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDDQLALMDEWNVRT 65

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+  ++     + + E      +F           I  N+I  D  +         
Sbjct: 66  HTGSGL-VERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 SYFHYR 130


>gi|313906420|ref|ZP_07839758.1| Exonuclease RNase T and DNA polymerase III [Eubacterium
           cellulosolvens 6]
 gi|313468755|gb|EFR64119.1| Exonuclease RNase T and DNA polymerase III [Eubacterium
           cellulosolvens 6]
          Length = 221

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 52/197 (26%), Gaps = 20/197 (10%)

Query: 6   VIYDYETFGRDVALD--RP-----AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           ++ D E        +  R       +   V +D   ++I      + KP           
Sbjct: 4   IVVDLEMNSISRKSEARRICNLETIEIGAVMLDDDLQEISCFRT-YVKPEYADGIAGNIT 62

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT            E  R    +       +  +     D            YD  
Sbjct: 63  ILTGITDDMVENAPK-FNEALRMFTNWCLGTGDAVTIHAWSDSDYNQIAKEIVLKRYDVS 121

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                         +++   ++            +   S K+  L +A        HDA 
Sbjct: 122 AEE----------AELLGNAWSDFQQEFDSHLGFERQMSLKM-ALNMAGIDFTGREHDAL 170

Query: 179 ADVYATLALVWLIREKK 195
            D   T  L+ + R++ 
Sbjct: 171 DDARNTAELLLVFRDEN 187


>gi|294789770|ref|ZP_06755000.1| oligoribonuclease [Simonsiella muelleri ATCC 29453]
 gi|294482276|gb|EFG29973.1| oligoribonuclease [Simonsiella muelleri ATCC 29453]
          Length = 184

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVF 59
            N+    D E  G +   D+  + A +  D     +  +EV+    +D+ L + +     
Sbjct: 4   QNNLCWLDMEMTGLNPDSDKIIEIAMIITDSNLNVLAQSEVYAIHQSDEILNNMDKWNTD 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               T   ++       E +    + QF           +  N I  D  +      +  
Sbjct: 64  THTRTGLVERVKSSTYTETQVETELLQFMQTWLPEKATPMCGNTIHQDRRFMVRHMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|283786843|ref|YP_003366708.1| oligoribonuclease [Citrobacter rodentium ICC168]
 gi|282950297|emb|CBG89944.1| oligoribonuclease [Citrobacter rodentium ICC168]
          Length = 181

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|222152791|ref|YP_002561968.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus uberis 0140J]
 gi|222113604|emb|CAR41463.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J]
          Length = 831

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 68/202 (33%), Gaps = 29/202 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             + + D E      +     Q   V + +  E  E+ +                  +TG
Sbjct: 18  KKYAVIDLEATNAG-STASIIQVGIVIL-QGGEIRETFQT---DVNPHEPLSEHIKSLTG 72

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+ ++  +     ++ ++ I+        CI   +N++FD        +   ++      
Sbjct: 73  ISDEQLSKAP-DFSQVAKTIYDLIHD---CIFVAHNVKFDANLLAESLFFEGFE------ 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                R D +++ +  Y                  + L  L+   G++  +AH A AD  
Sbjct: 123 -LRTPRIDTVELAQVFYPTFE-------------KYNLSVLSSELGLDLSDAHTAIADAI 168

Query: 183 ATLALVWLIREKKPKLFEYLYD 204
           AT  L   ++EK  ++     +
Sbjct: 169 ATAKLFLKLQEKISQIPLETLE 190


>gi|317503610|ref|ZP_07961630.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
 gi|315665271|gb|EFV04918.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
          Length = 284

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 50/204 (24%), Gaps = 36/204 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + F + D ET               VRV+     ++          DD         + 
Sbjct: 3   KHTFTVIDIET--MTPERTSACALGLVRVEND-VIVQKFYSLIKPIPDDRTVT--NTHVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP+          +    I  + S     ++  +N  FD    + +            
Sbjct: 58  GITPEMVENAP-TFQDLWPTIEHYIS---GQVLAAHNTSFDLDVLKKVSTHYGITIPITG 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             +  S                            T   L +      ++    HDA  D 
Sbjct: 114 VVDTFS---------------------------LTHLSLDETCKVLHVDLGKHHDALCDA 146

Query: 182 YATLALVWLIREKKPKLFEYLYDY 205
            A   ++ ++   +         +
Sbjct: 147 TACAEIILVLSGVELPKPTESIPH 170


>gi|297559543|ref|YP_003678517.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843991|gb|ADH66011.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 216

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 41/137 (29%), Gaps = 25/137 (18%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59
           M +  V  D E  G D   D   + A +  D +   ++       +P       P+A   
Sbjct: 1   MNDSLVWIDCEMTGLDFERDALIEVACLITDGELNILDEGVDVVIRP-------PQAALD 53

Query: 60  -----------ITGITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDY 104
                       +G+  +  L  GV   E        I ++ + P    +  N+I  D  
Sbjct: 54  RMGDFVRDMHTTSGLLEE--LDKGVSLQEAEDLVLEHIRRYVTEPRKAPLCGNSIATDRT 111

Query: 105 YSRNIFYRNFYDSYRWS 121
           +      R     +   
Sbjct: 112 FLARDMKRIDEFLHYRM 128


>gi|148225871|ref|NP_001088822.1| REX2, RNA exonuclease 2 homolog [Xenopus laevis]
 gi|126631799|gb|AAI33811.1| LOC496097 protein [Xenopus laevis]
          Length = 186

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G D+  D   + A +  D   + +        K  D+ L        
Sbjct: 5   MGQRMVWVDLEMTGLDIEKDEIIEMACLITDSNLDILAEGPNLIIKQPDELLDGMSDWCK 64

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   Q      +   +       F      P  C +  N++  D  +      R 
Sbjct: 65  EHHGKSGLTQAVRESRITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKYMPRF 124

Query: 114 FYDSYRW 120
               +  
Sbjct: 125 MRHLHYR 131


>gi|317495208|ref|ZP_07953578.1| exonuclease [Gemella moribillum M424]
 gi|316914630|gb|EFV36106.1| exonuclease [Gemella moribillum M424]
          Length = 623

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 30/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F I D E            QFA  ++D  +  I S   ++ KP    +       +TGIT
Sbjct: 10  FCIVDIELT----EEKEIIQFAAKKIDFNFRVINSIN-YYIKPIQSDITS-FVTDLTGIT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          + S+ ++++       I+  + ++ D    +  F     +       +
Sbjct: 64  NEILRDKP-SFRKVSKVLYEYIKDG---ILVCHGLQSDYLILKKHFQDIGIEY------S 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYA 183
            +   D +++ R                   +S++L DLA +       N H+A  DV A
Sbjct: 114 PSMSLDTVELARLF-------------LPTQSSYRLSDLAASLNIYSSDNYHNAVIDVKA 160

Query: 184 TLALVWLI 191
           T  L+  I
Sbjct: 161 TAKLLETI 168


>gi|119944051|ref|YP_941731.1| exonuclease, RNase T and DNA polymerase III [Psychromonas
           ingrahamii 37]
 gi|119862655|gb|ABM02132.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas
           ingrahamii 37]
          Length = 228

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/178 (10%), Positives = 46/178 (25%), Gaps = 22/178 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST-EVFFCKPADDYLPDPEAVFITG 62
             +  D E  G D   D+      + +    +      +    K         ++  I G
Sbjct: 42  TLLALDIEMTGLDPKKDQMVSIGIIPI-INAKIQPEFAQHKLIKIQGSV---GQSAVIHG 97

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +  +      +   E  + +   F      ++  ++ + D  + +    ++         
Sbjct: 98  VLDKDLADA-LPLEEALQWL---FEQCKDKVLVAHHAQLDLQFLQQSLSKSG-------- 145

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                      +         +      +     S +L        +   NAH+A  D
Sbjct: 146 -----AHSFSMLAIDTLIIEKERELRKHQVLKTGSLRLNACRDRYNLPIYNAHNALTD 198


>gi|242064994|ref|XP_002453786.1| hypothetical protein SORBIDRAFT_04g017420 [Sorghum bicolor]
 gi|241933617|gb|EES06762.1| hypothetical protein SORBIDRAFT_04g017420 [Sorghum bicolor]
          Length = 246

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 15/115 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G D+  DR  + A +  D +           I  ++       +       
Sbjct: 67  LVWIDLEMTGLDITKDRILEIACIITDGKLTKQIEGPDLVIGQSKDCLDNMGEWCKTHHA 126

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
           A  +T    ++ L+  + E +   ++  F        T ++  N++  D  + + 
Sbjct: 127 ASGLT----ERVLQSELSEHDAEAKVLDFVRKHINSGTPLLAGNSVYVDLLFLKK 177


>gi|208806770|ref|ZP_03249107.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4206]
 gi|208726571|gb|EDZ76172.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4206]
          Length = 188

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|254426843|ref|ZP_05040550.1| ribonuclease T [Alcanivorax sp. DG881]
 gi|196193012|gb|EDX87971.1| ribonuclease T [Alcanivorax sp. DG881]
          Length = 228

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 63/207 (30%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V ++   +          F   P      +  A+  TG
Sbjct: 24  VVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFPGANLEQAALDFTG 83

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E    + + +           +  ++  +N  FD  +      R    
Sbjct: 84  IDPSNPLRGAVSEETALKGVFEPIRKAVKQHGCSRAVLVGHNSFFDQGFLNAATDRA--- 140

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
             + S  +  S +D   +   +Y  +                 L     A GI      A
Sbjct: 141 DIKRSPFHPFSSFDTATLAGLVYGQTV----------------LAKACEAAGIRFSQREA 184

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A  D   T  L   +  +   L  +
Sbjct: 185 HSALYDATRTAELFCSMVNRFKTLGGW 211


>gi|283785581|ref|YP_003365446.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168]
 gi|282949035|emb|CBG88638.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168]
          Length = 220

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 68/265 (25%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-VDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DIIPHYY------GSEWYVAHNASFDSRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T A
Sbjct: 97  -----ICTMKLSRRL------WPGIKYSNMALYKSRKLNVQTPAGLHHHRALYDCYITAA 145

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
           L+  I        E + +                 P +  +  FG  R     ++ VA  
Sbjct: 146 LLIDIMNTSGWTPEQMVEI-------------TGRPALLTTFSFGTYRGKA--VSEVAKR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|24372183|ref|NP_716225.1| oligoribonuclease [Shewanella oneidensis MR-1]
 gi|29611787|sp|Q8EJ78|ORN_SHEON RecName: Full=Oligoribonuclease
 gi|24346089|gb|AAN53670.1|AE015506_5 oligoribonuclease [Shewanella oneidensis MR-1]
          Length = 181

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G +  +DR  + A +  D++   I    V     +D+ L   D      
Sbjct: 6   NNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   ++     V EAE   +   F +         +  N++  D  +          
Sbjct: 66  HGESGLIERVRASQVNEAEAVAQTIAFLAQYVPKGVSPMCGNSVGQDRRFLNRYMRELED 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|295692577|ref|YP_003601187.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus crispatus ST1]
 gi|295030683|emb|CBL50162.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus crispatus ST1]
          Length = 177

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 55/191 (28%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   +     A V V    + ++               D   + I  I
Sbjct: 2   NFIAMDFET--ANHYPESACSLALVMVRNN-KIVDRFYTV---INPQMPFDARNIQIHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE    I +        ++  +N RFD    R    R   +       
Sbjct: 56  TAEDVKNAP-TMAEVWPHIKEL--YQPGMLVAAHNARFDTNVMRQSLARYGIEEP----- 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                          Y            +      KL  ++ A  +E  + H+A +D  A
Sbjct: 108 --------------HYLVIDTLASSKLLEPELPDHKLDTVSEALNVELWHHHNALSDSEA 153

Query: 184 TLALVWLIREK 194
              ++    E+
Sbjct: 154 CAGILIKQEEQ 164


>gi|332878806|ref|ZP_08446521.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683157|gb|EGJ56039.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 183

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 54/200 (27%), Gaps = 25/200 (12%)

Query: 1   MTNHFVIYDYETF---GRDV--ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           MTN  +I D E     G      +    +     +D    +I        KP       P
Sbjct: 1   MTNKIIIIDLEATCWEGIPPKGEVSEIIEIGICLLDTLTGEISDNRGILVKPT-HSKISP 59

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T ITP+   R+GV   +  + + + +         Y N    +   +    R   
Sbjct: 60  FCTQLTTITPELVAREGVSFEKALQILKREYQAYQYTWASYGNYD-KNMLQKQCALRKLP 118

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
              R    N             +     +  Q P R     +     +           H
Sbjct: 119 YPMRNEHIN-------------VKELFQEVTQHPKRLGMHQALNYLKI-----PLVGTHH 160

Query: 176 DAKADVYATLALVWLIREKK 195
             K D Y    ++  +   +
Sbjct: 161 RGKDDAYNIAKIMHCLSHYQ 180


>gi|295394431|ref|ZP_06804655.1| oligoribonuclease [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972783|gb|EFG48634.1| oligoribonuclease [Brevibacterium mcbrellneri ATCC 49030]
          Length = 200

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 11/117 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFI 60
           +  V  D E  G ++ +D   + A +  D     ++       KP        +     +
Sbjct: 4   DKIVWIDCEMTGLELEVDELIEVAAIVTDFDLNPVDEGVDVIIKPSQRARENMNDFVTNM 63

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIF 110
               G+  +  L  G+   E +  +  +            +G N++  D  + +   
Sbjct: 64  HTTSGLIDK--LDAGMSVDEAATIVLDYIKKHVPEAGKAPLGGNSVGTDKTFLQKQM 118


>gi|323497579|ref|ZP_08102596.1| hypothetical protein VISI1226_22170 [Vibrio sinaloensis DSM 21326]
 gi|323317328|gb|EGA70322.1| hypothetical protein VISI1226_22170 [Vibrio sinaloensis DSM 21326]
          Length = 176

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 20/148 (13%)

Query: 3   NHFVIYDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           N  V +D E          T G         +     +D    +I     ++ KP +D +
Sbjct: 4   NRIVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLAKGEIVKRAQYYVKPENDEV 57

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                V +TGITP+K  + G    E  + + + F   N     +     DD         
Sbjct: 58  -SMFCVELTGITPRKIEKQGRPLEEVLKSMVKNFGGSNKIFASW---GRDDLVLAQECQD 113

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
              +     + N  + + + + ++    
Sbjct: 114 KGIEMPFKEFINLATLYRIQNRLKDKRI 141


>gi|50310933|ref|XP_455489.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644625|emb|CAG98197.1| KLLA0F08998p [Kluyveromyces lactis]
          Length = 306

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 58/221 (26%), Gaps = 16/221 (7%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---------TEVFFCKPADDY 51
           +    V  D E  G D   D+  +   +  D Q    +           +       +  
Sbjct: 61  LKQPIVWIDCEMTGLDHINDKIIEVCCIITDGQLNVADEDGYESVIHYDKSIMDNMNEWC 120

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           +       +T            VE E    I ++       ++  N++  D  +  N F 
Sbjct: 121 INQHGFSGLTQKVLDSVKTREQVEEELLNYIKKWIPDQRQGVLAGNSVHMDRLFMLNEFP 180

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           +     +           D+  +M      +P       +  GA + K   L     ++ 
Sbjct: 181 KVIDHLFYR-------IIDVSSIMEVARRHNPQLASVTYKKKGAHTAKADILESIEQLKF 233

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
              H  K D      +     E + +         NK    
Sbjct: 234 YENHYFKNDTETKEFVDRRKAEIQREAENAKEKEDNKRDSE 274


>gi|239941451|ref|ZP_04693388.1| oligoribonuclease [Streptomyces roseosporus NRRL 15998]
 gi|239987915|ref|ZP_04708579.1| oligoribonuclease [Streptomyces roseosporus NRRL 11379]
 gi|291444893|ref|ZP_06584283.1| oligoribonuclease [Streptomyces roseosporus NRRL 15998]
 gi|291347840|gb|EFE74744.1| oligoribonuclease [Streptomyces roseosporus NRRL 15998]
          Length = 201

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  +A D   + A +  D +   +        +P D  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60

Query: 60  -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            +    G+  + A    + EAE      + +    P    +  N++  D  +        
Sbjct: 61  QMHTASGLLDELAGGTTLAEAEEQVLSYVREHVKEPGKAPLCGNSVGTDRGFLARDMRDL 120

Query: 114 FYDSYRW 120
               +  
Sbjct: 121 ESYLHYR 127


>gi|148982513|ref|ZP_01816787.1| oligoribonuclease [Vibrionales bacterium SWAT-3]
 gi|145960438|gb|EDK25820.1| oligoribonuclease [Vibrionales bacterium SWAT-3]
          Length = 169

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 31/125 (24%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
            + +  D E  G D    +  + A +  D +   +     +   +P  +     E    T
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQPQSELDKMDEWCTTT 65

Query: 62  GITPQKAL---RDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
                         V E +   +   F           I  N+I  D  +          
Sbjct: 66  HTGSGLVKRIQESTVTEQDAIEQTIAFLEKWVPKGKSPICGNSIGQDRRFLYKHMPELEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|294506709|ref|YP_003570767.1| DNA polymerase III, epsilon chain [Salinibacter ruber M8]
 gi|294343037|emb|CBH23815.1| DNA polymerase III, epsilon chain [Salinibacter ruber M8]
          Length = 211

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 27/123 (21%), Gaps = 11/123 (8%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G     D   +     V  Q E +          A        A  + GIT 
Sbjct: 42  VFLDTETTGSGP-QDAVIELG--VVAAQGEVL-----LHTLVAPLAPVTRGARRVHGITD 93

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++           + R+    +             +D                     + 
Sbjct: 94  EELADAP-PFPTVADRLDTVLADAECVWTF--GPTYDRRMLLQTAALAECPETHRRIQDS 150

Query: 126 NSR 128
             R
Sbjct: 151 TWR 153


>gi|261867655|ref|YP_003255577.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412987|gb|ACX82358.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 182

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 15/131 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +           +    K ++  + 
Sbjct: 5   KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAIRQPDALLNKMSEWCVK 64

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110
              A    G+  ++     + +     +   F           I  N++  D  +     
Sbjct: 65  THTA---NGL-IERVKASKLTKRAAELQTLDFLKKYVPKGASPICGNSVAQDKRFLFKYM 120

Query: 111 YRNFYDSYRWS 121
                  +   
Sbjct: 121 PELADYFHYRH 131


>gi|262045749|ref|ZP_06018713.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
 gi|260573708|gb|EEX30264.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
          Length = 177

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   +     A V V    + ++               D   + +  I
Sbjct: 2   NFIAMDFET--ANHYPESACSLALVMVRNN-KIVDRFYTV---INPQMPFDARNIQVHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE    I +        ++  +N RFD    R    R   +       
Sbjct: 56  TAEDVKNAP-TMAEVWPHIKEL--YQPGMLVAAHNARFDTNVMRQSLARYGIEEP----- 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                          Y            +      KL  ++ A  +E  + H+A +D  A
Sbjct: 108 --------------HYLVIDTLASSKLLEPELPDHKLDTVSEALSVELWHHHNALSDSEA 153

Query: 184 TLALVWLIREK 194
              ++    E+
Sbjct: 154 CAGILIKQEEQ 164


>gi|237808201|ref|YP_002892641.1| ribonuclease T [Tolumonas auensis DSM 9187]
 gi|237500462|gb|ACQ93055.1| ribonuclease T [Tolumonas auensis DSM 9187]
          Length = 206

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D+     ++ T  F  +P +    +  A+   G
Sbjct: 13  VVIDVETAGFNPKTDALLEMAATTLKMDQDGWLSLDQTIHFHVEPFEGANIEKAAIDFNG 72

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E +      +           N  I+  +N  FD  +      R    
Sbjct: 73  IDPFNPLRGAVSEYDALHETFKIIRKGMKAEGCNRAIVVAHNATFDHSFMMAASERASLK 132

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +       +          D                    AH 
Sbjct: 133 RNPFHPFATFDTAALAGLALGQTVLAKACQTAAIPFDNN-----------------EAHS 175

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  K
Sbjct: 176 ALYDTERTAELFCYIVNK 193


>gi|212633655|ref|YP_002310180.1| oligoribonuclease [Shewanella piezotolerans WP3]
 gi|212555139|gb|ACJ27593.1| Exonuclease [Shewanella piezotolerans WP3]
          Length = 181

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G + A+DR  + A +  D++   I    V      D+   L D      
Sbjct: 6   NNLIWVDLEMTGLEPAVDRIIEIATIVTDKELNIIAQGPVIAIHQTDEQLALMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   ++       E +   +  +F S         +  N+I  D  +          
Sbjct: 66  HGESGLVERVKASQFSEEDAIAQTIEFLSQYVPAGASPMCGNSIGQDRRFLNRYMPALED 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 FFHYR 130


>gi|209731072|gb|ACI66405.1| Oligoribonuclease, mitochondrial precursor [Salmo salar]
          Length = 207

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 15/131 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYL 52
           M    V  D E  G D+  D+  + A +  D +           I +T        D   
Sbjct: 10  MRQRMVWVDLEMTGLDIEKDQIIEMACIITDSELNVLSEGPNLIINTTSELLDGMDDWCK 69

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNI 109
                  +T    Q      +   +       F      P  C +  N++  D  +    
Sbjct: 70  EHHGNSGLT----QAVRDSKISLQQAEYEFLSFIRQHTPPGHCPLAGNSVHADKKFLDKY 125

Query: 110 FYRNFYDSYRW 120
             +  +  +  
Sbjct: 126 MPQFMHHLHYR 136


>gi|73662206|ref|YP_300987.1| exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494721|dbj|BAE18042.1| putative exonuclease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 184

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 56/203 (27%), Gaps = 31/203 (15%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+N  F+  D+ET   +           V+V    +  ES          +     + + 
Sbjct: 1   MSNDAFIALDFET--ANGKRTSICAVGMVKV-VNHQITESFYTL---VNPNDYFSQQNIA 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +  I P++              + QF        +  +N  FD            +D+  
Sbjct: 55  VHSIHPEQVEDAP-TFQTVYPYMLQFI---GDLPVVAHNAAFDMNVLHESISAFGFDTPN 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            ++                       +Q   R      + L  +     ++    HDA  
Sbjct: 111 MTY--------------------FCSLQLSRRTVENHRYGLNYMMQYYNLDFHGHHDALN 150

Query: 180 DVYATLALVWLIREKKPKLFEYL 202
           D  A   + + + +    L   L
Sbjct: 151 DAKACAMITFRLLKHYDDLPSML 173


>gi|332638341|ref|ZP_08417204.1| DNA polymerase III subunit alpha [Weissella cibaria KACC 11862]
          Length = 183

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 58/202 (28%), Gaps = 39/202 (19%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
             +V++D E  G +    +  +   +++    + IE   V    P         A F   
Sbjct: 7   KDYVVFDLEMNGSN----QIIEIGALKI-TTGKDIEKFSVIVNNPPKG---SGMASFKFI 58

Query: 61  -------TG-ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                   G IT       G+ E     R  +F       ++G+  +  D    +     
Sbjct: 59  SQSMGGEHGWITLDMIHN-GLSEERALSRFMKFVGEYP--VVGHAIVDGDVQLVKEG--- 112

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                    W      +D   +               + +       L  LA    +E  
Sbjct: 113 -LRYHDLGKWHTNGKIFDTQQL-------------HGALNGNPNDISLSGLAATYDVEIG 158

Query: 173 NA-HDAKADVYATLALVWLIRE 193
              H A AD  ATLA+   ++ 
Sbjct: 159 KQKHRALADAKATLAVFSAMQR 180


>gi|291521153|emb|CBK79446.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Coprococcus catus GD/7]
          Length = 320

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 65/235 (27%), Gaps = 27/235 (11%)

Query: 4   HFVIYDYETF------GRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           ++V+ D+E        G +         +   V++D   ++I+       +P        
Sbjct: 2   NYVVVDFEWNQACYGKGSENRKIPFEIIEIGAVKLDENLKEIDRF-SRTIRPKVYKKLHY 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +TGIT ++              +  F        I       D    +        
Sbjct: 61  ITRDLTGITQEELCASDPFSY----VLVDFMLWCGKDYIFCTWGNMDLVELQRNMKYYGL 116

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                        +++    R + A     +   S  D     K               H
Sbjct: 117 LDLL---KGPVKYYNVQKFFRLLCAHDASAVSLESAVDYFQLPK-----------EAGFH 162

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
            A  D   T  +   I +++ K    +  Y+N       I ++  +   ++S +F
Sbjct: 163 RAVNDAAYTADVFRRIDQEEAKKLYSIDYYQNPQSKGDEIHLRYDSYYKYISRVF 217


>gi|38704238|ref|NP_313168.2| oligoribonuclease [Escherichia coli O157:H7 str. Sakai]
 gi|161367457|ref|NP_290795.2| oligoribonuclease [Escherichia coli O157:H7 EDL933]
 gi|168747976|ref|ZP_02772998.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4113]
 gi|168755351|ref|ZP_02780358.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4401]
 gi|168766441|ref|ZP_02791448.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4486]
 gi|168774540|ref|ZP_02799547.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4196]
 gi|168780594|ref|ZP_02805601.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4076]
 gi|168784799|ref|ZP_02809806.1| oligoribonuclease [Escherichia coli O157:H7 str. EC869]
 gi|168802329|ref|ZP_02827336.1| oligoribonuclease [Escherichia coli O157:H7 str. EC508]
 gi|195935954|ref|ZP_03081336.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4024]
 gi|208812669|ref|ZP_03253998.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4045]
 gi|208819030|ref|ZP_03259350.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4042]
 gi|209398620|ref|YP_002273707.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4115]
 gi|217325417|ref|ZP_03441501.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14588]
 gi|254796184|ref|YP_003081021.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14359]
 gi|261225285|ref|ZP_05939566.1| oligoribonuclease [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255463|ref|ZP_05947996.1| oligoribonuclease [Escherichia coli O157:H7 str. FRIK966]
 gi|291285577|ref|YP_003502395.1| Oligoribonuclease [Escherichia coli O55:H7 str. CB9615]
 gi|20138827|sp|Q8XDP0|ORN_ECO57 RecName: Full=Oligoribonuclease
 gi|187769887|gb|EDU33731.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4196]
 gi|188017565|gb|EDU55687.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4113]
 gi|189001658|gb|EDU70644.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4076]
 gi|189357409|gb|EDU75828.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4401]
 gi|189363946|gb|EDU82365.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4486]
 gi|189374804|gb|EDU93220.1| oligoribonuclease [Escherichia coli O157:H7 str. EC869]
 gi|189375661|gb|EDU94077.1| oligoribonuclease [Escherichia coli O157:H7 str. EC508]
 gi|208733946|gb|EDZ82633.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4045]
 gi|208739153|gb|EDZ86835.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4042]
 gi|209160020|gb|ACI37453.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4115]
 gi|217321638|gb|EEC30062.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14588]
 gi|254595584|gb|ACT74945.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14359]
 gi|290765450|gb|ADD59411.1| Oligoribonuclease [Escherichia coli O55:H7 str. CB9615]
 gi|320190703|gb|EFW65353.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str.
          EC1212]
 gi|320638923|gb|EFX08569.1| oligoribonuclease [Escherichia coli O157:H7 str. G5101]
 gi|320644292|gb|EFX13357.1| oligoribonuclease [Escherichia coli O157:H- str. 493-89]
 gi|320649610|gb|EFX18134.1| oligoribonuclease [Escherichia coli O157:H- str. H 2687]
 gi|320655006|gb|EFX22967.1| oligoribonuclease [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660513|gb|EFX27974.1| oligoribonuclease [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665782|gb|EFX32819.1| oligoribonuclease [Escherichia coli O157:H7 str. LSU-61]
 gi|326341785|gb|EGD65568.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str.
          1125]
 gi|326346640|gb|EGD70374.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str.
          1044]
          Length = 181

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|117919043|ref|YP_868235.1| oligoribonuclease [Shewanella sp. ANA-3]
 gi|166216589|sp|A0KSR0|ORN_SHESA RecName: Full=Oligoribonuclease
 gi|117611375|gb|ABK46829.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3]
          Length = 181

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G +  +DR  + A +  D++   I    V     +DD L   D      
Sbjct: 6   NNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +     + EA+   +   F           +  N++  D  +          
Sbjct: 66  HGESGLIDRVRASQMNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELED 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|157147866|ref|YP_001455185.1| oligoribonuclease [Citrobacter koseri ATCC BAA-895]
 gi|166230513|sp|A8AMN6|ORN_CITK8 RecName: Full=Oligoribonuclease
 gi|157085071|gb|ABV14749.1| hypothetical protein CKO_03672 [Citrobacter koseri ATCC BAA-895]
          Length = 181

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|306819268|ref|ZP_07452979.1| oligoribonuclease [Mobiluncus mulieris ATCC 35239]
 gi|304648050|gb|EFM45364.1| oligoribonuclease [Mobiluncus mulieris ATCC 35239]
          Length = 208

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAV 58
           +T+  V  D E  G D+A D   +   +  D     +++      KP+   L +      
Sbjct: 8   LTDALVWVDCEMTGLDLATDELIEIGVIVTDFDLNPLDTGIDLLIKPSQTALDNMGDFVR 67

Query: 59  FIT---GITPQKALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
            +    G+  +      V EA  +    + +F        +  N++  D  + +   
Sbjct: 68  EMHTKSGLLDELDHGLPVTEAARQVLEYVQRFVPEAGKAPLAGNSVGTDKTFLKKQM 124


>gi|257870106|ref|ZP_05649759.1| exonuclease [Enterococcus gallinarum EG2]
 gi|257804270|gb|EEV33092.1| exonuclease [Enterococcus gallinarum EG2]
          Length = 180

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +         A V V R  + +            +     + + I GI
Sbjct: 5   NFIAMDFET--ANYQKHSACSLALVMV-RDSKIVGEYYTL---IQPETDFFWKNIQIHGI 58

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+  +       +  ++I Q++++ +  +I  +N  FD             D Y     
Sbjct: 59  HPEDVVNAPK-FPDIWKQIQQYYNLNS--LIVAHNAGFDTGVLA-----GCLDYYGIEQP 110

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           N    +  L  +R      P+              KL  +     I  +N HDA  D  A
Sbjct: 111 N----YLSLCTVRTSRKLYPEFEN----------HKLNTVCQQLQIPLLNHHDALEDSRA 156

Query: 184 TLALVWLIREK 194
              ++      
Sbjct: 157 CAQILLRQEND 167


>gi|332373288|gb|AEE61785.1| unknown [Dendroctonus ponderosae]
          Length = 220

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
              V  D E  G +V  D+  + A +  D     +            + L       V  
Sbjct: 43  ERLVWIDMEMTGLNVDQDKIMEVACIVTDTDLNIVAEGLEIVINQPKETLDNMHEWCVKQ 102

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G T   +  L+      +    I  F      P+   +  N++  D ++      +   
Sbjct: 103 HGKTGLTEACLKSQTSLEQAEDSIMDFLRAHVTPHCSPLAGNSVYMDRFFLIKYMPKVHD 162

Query: 116 DSYRW 120
             +  
Sbjct: 163 YLHYR 167


>gi|289670069|ref|ZP_06491144.1| ribonuclease T [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 211

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 60/212 (28%), Gaps = 41/212 (19%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDY 51
           M+  F     V+ D ET G D       + A V ++      +   ++       PA   
Sbjct: 16  MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLV-PAPGL 74

Query: 52  LPDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRF 101
             DP+++ ITGI     L      A+            +            I+  +N  F
Sbjct: 75  EIDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHF 130

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D  +      R  +    +      S +D + +    Y              G T     
Sbjct: 131 DLNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARA 173

Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIRE 193
             A        +AH A  D   T  L   I  
Sbjct: 174 AQAAGLDWNAADAHSAVYDTEQTARLFCTIAN 205


>gi|262401567|ref|ZP_06078134.1| oligoribonuclease [Vibrio sp. RC586]
 gi|262352282|gb|EEZ01411.1| oligoribonuclease [Vibrio sp. RC586]
          Length = 181

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
            + +  D E  G D    +  + A +  D +   +           E    K  +     
Sbjct: 6   QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFY 111
             A  +      +     V E +   +   F           I  N+I  D  +      
Sbjct: 66  HTASGL----VARVRASQVSEEQAIDQTLAFLKQWVPERKSPICGNSIGQDRRFLYKHMP 121

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 122 RLEAYFHYR 130


>gi|255324289|ref|ZP_05365410.1| oligoribonuclease [Corynebacterium tuberculostearicum SK141]
 gi|255298619|gb|EET77915.1| oligoribonuclease [Corynebacterium tuberculostearicum SK141]
          Length = 215

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 8/118 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60
           +  V  D E  G D       + A V  D     +           +D L   ++    +
Sbjct: 14  DRLVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGEGIDLVVHATEDELAQMDSFVTQM 73

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112
              +   ++         E    +    +      +   +  N+I  D  + R    R
Sbjct: 74  HAKSGLDKEIRESTTSIGEAEDAVLALINEHCDPEHPAPLAGNSIATDRTFIRTYMPR 131


>gi|311741236|ref|ZP_07715060.1| oligoribonuclease [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303406|gb|EFQ79485.1| oligoribonuclease [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 215

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 8/118 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60
           +  V  D E  G D       + A V  D     +           ++ L   ++    +
Sbjct: 14  DRLVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGEGIDLVVHATEEELAQMDSFVTEM 73

Query: 61  T---GITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
               G+  +        G  E      I+++    +   +  N+I  D  + R    R
Sbjct: 74  HASSGLDKEICESTTSIGEAEDAVLALINEYCDPEHPAPLAGNSIATDRTFIRTYMPR 131


>gi|120598470|ref|YP_963044.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
 gi|120558563|gb|ABM24490.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
          Length = 223

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 48/172 (27%), Gaps = 20/172 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D E  G D   D+      V ++     +E       +         ++  I GI     
Sbjct: 41  DLEMTGLDPLQDQILSIGLVPIEHGVIPLEGALQKLVQIRGSV---GQSATIHGILDNHL 97

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
           ++   +E   +     F +     ++  ++   D  + +            +        
Sbjct: 98  VQAVTIEDAMAW----FIAKTRGRVLVAHHSPLDCRFLQQDILA------IYHQAVFLPS 147

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            D L + +         I+         S +L       G+   +AH A  D
Sbjct: 148 IDTLMLEKRRLLRGHHAIK-------EGSLRLGACRERYGLPVYSAHSALTD 192


>gi|311279254|ref|YP_003941485.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
           SCF1]
 gi|308748449|gb|ADO48201.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
           SCF1]
          Length = 219

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 67/266 (25%), Gaps = 54/266 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET           + A V +    +              D    P+A+ I  IT +
Sbjct: 4   VIDTETCDL---QGGVVEIASVDI-VDGKITNPMSHL---IRPDRPISPQAMAIHRITEE 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E            +   + +N            F R         W    
Sbjct: 57  MVADKPWIE-EVVP-----LYQGSAWYVAHN----------ASFDRRVLPEMNGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R ++          S      S KL           ++ H A  D Y T A
Sbjct: 97  --ICTMKLARRLWPGIK-----YSNMALYKSRKLSVATP----PGLHHHRALYDCYITAA 145

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246
           L+  I        + + +   +  L                  F   +     +A +A +
Sbjct: 146 LLIDIINTSGWTPDQMAEITGRPALLT---------------TFTFGKYRGKPVAEIAQN 190

Query: 247 -PRYKDSVIGCNLSGDMRVFQDLDSV 271
            P Y   +     +   ++   L   
Sbjct: 191 DPGYLRWLFNNLDNMSPQLRLTLKHW 216


>gi|92113002|ref|YP_572930.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM
           3043]
 gi|91796092|gb|ABE58231.1| Exonuclease [Chromohalobacter salexigens DSM 3043]
          Length = 205

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 20/186 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET   D         A V+V R    + ++E    +         +++ I G+  
Sbjct: 32  IALDCETTDLDPRQADLVAIAAVKV-RDGRVL-TSESLDLRLQRPDSLSSDSIRIHGLRG 89

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
              L  G    +    +  F    N  ++G+         +R++  R  +D    +    
Sbjct: 90  VDLLG-GEALGDALNTLLDFI--GNRPLVGWCIDYDVAVINRHLRPRTGFDLPNRT---- 142

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 +DV R          +  ++ D     + + ++ A G+  +  H A  D   T 
Sbjct: 143 ------IDVCRLYA-----RERRRAQPDVEPDLRFEAMSEALGVPVMGRHTALGDAVTTA 191

Query: 186 ALVWLI 191
            +   +
Sbjct: 192 LMYLRL 197


>gi|71064966|ref|YP_263693.1| DNA polymerase III subunit epsilon [Psychrobacter arcticus 273-4]
 gi|71037951|gb|AAZ18259.1| probable DNA polymerase III, epsilon subunit [Psychrobacter
           arcticus 273-4]
          Length = 203

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 49/187 (26%), Gaps = 19/187 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D E  G +         A + ++       +     C+P    +P  + + I G+  
Sbjct: 36  VAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPP--VMPKSDTIVIHGLRT 93

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                  +   E    +  F        +     + D  +   +  R             
Sbjct: 94  ADVEHA-MSYDEMLSLLLPFI---GNRPLVGFFPQIDVGFLNPLVKRYMGTHLPNE---- 145

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                    +  I +     +   S+   + +  L  +     I  +  HDA  D   T 
Sbjct: 146 ---------VIDIRSLYSRRMMGRSQGLPSQAQHLNSILKHYNIPELGTHDAYNDAIMTA 196

Query: 186 ALVWLIR 192
                +R
Sbjct: 197 MAFLHVR 203


>gi|59712936|ref|YP_205712.1| oligoribonuclease [Vibrio fischeri ES114]
 gi|81310874|sp|Q5E2C2|ORN_VIBF1 RecName: Full=Oligoribonuclease
 gi|59481037|gb|AAW86824.1| oligoribonuclease [Vibrio fischeri ES114]
          Length = 181

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 30/125 (24%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
            + +  D E  G D    +  + A +  D Q   +     +   +P ++          T
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIASIVTDAQLNILAEGPVIAIHQPEEELAKMDNWCTNT 65

Query: 62  GIT---PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
                   +       E         F           I  N+I  D  +      R   
Sbjct: 66  HTNSGLVARVQESKYDEEAAIAETIAFLEQWVPKGVSPICGNSIGQDRRFLYKHMPRLEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|197335831|ref|YP_002156764.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
 gi|197317321|gb|ACH66768.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
          Length = 223

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 50/184 (27%), Gaps = 33/184 (17%)

Query: 20  DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76
            R  +   V      E I        F      D L D EA+ + GIT +          
Sbjct: 12  HRIVEIGAV------EIINRKLTGNHFHVYIKPDRLIDLEAIDVHGITDEFLYDKPE--- 62

Query: 77  EFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVM 135
              + IH +F        +  +N  FD  +    F                S+ + L   
Sbjct: 63  --YKDIHDEFLEFIKGAELVAHNAPFDVGFMDYEF----------------SKLNKLIGT 104

Query: 136 RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYATLALVWLIRE 193
              Y    D +    +        L  L    GI+  H   H A  D      +  L+  
Sbjct: 105 TDQYCKITDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTG 164

Query: 194 KKPK 197
            +  
Sbjct: 165 GQTS 168


>gi|12519147|gb|AAG59361.1|AE005649_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13364618|dbj|BAB38564.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209750348|gb|ACI73481.1| hypothetical protein ECs5141 [Escherichia coli]
 gi|209750350|gb|ACI73482.1| hypothetical protein ECs5141 [Escherichia coli]
 gi|209750352|gb|ACI73483.1| hypothetical protein ECs5141 [Escherichia coli]
 gi|209750354|gb|ACI73484.1| hypothetical protein ECs5141 [Escherichia coli]
 gi|209750356|gb|ACI73485.1| hypothetical protein ECs5141 [Escherichia coli]
          Length = 204

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 29 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65


>gi|254509115|ref|ZP_05121216.1| oligoribonuclease [Vibrio parahaemolyticus 16]
 gi|219547953|gb|EED24977.1| oligoribonuclease [Vibrio parahaemolyticus 16]
          Length = 181

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
            + +  D E  G D    +  + A +  D +   +     +   +P  +     E    T
Sbjct: 6   QNLIWMDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQPESELEKMDEWCTTT 65

Query: 62  GI---TPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
                   +     V E +  R+  +F           I  N+I  D  +          
Sbjct: 66  HTGSGLVARVRASQVTEQDAIRQTIEFLEKWVPKGKSPICGNSIGQDRRFLYKHMPELEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|94676725|ref|YP_589014.1| oligoribonuclease [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|172046199|sp|Q1LSQ0|ORN_BAUCH RecName: Full=Oligoribonuclease
 gi|94219875|gb|ABF14034.1| oligoribonuclease [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 184

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 46/165 (27%), Gaps = 19/165 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD--YLPDPEAVFI 60
           ++ +  D E  G +   DR  + A +  D     I    V     +++   L +   + I
Sbjct: 5   HNLIWIDLEMTGLNPEQDRILEIATLITDANLNIIAEGPVLAIHQSEEQLKLMNTWNIRI 64

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+  +K  +  + E   + +   F           I  N+I  D  +         
Sbjct: 65  HTANGL-IEKVRKSTLNEETAAAQTIAFLQEWVPAGKSPICGNSISQDRRFLYR------ 117

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                         +  LDV            +  +      S K
Sbjct: 118 ----YMPILESYFHYRCLDVSTLQELARRWKPKIMAGIKKKNSHK 158


>gi|90022321|ref|YP_528148.1| oligoribonuclease [Saccharophagus degradans 2-40]
 gi|89951921|gb|ABD81936.1| Exonuclease [Saccharophagus degradans 2-40]
          Length = 181

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G     D   + A +  D Q   +    +         +   D      
Sbjct: 6   NNLIWIDLEMTGLVPDRDVIIEIATIVTDAQLNVLAEGPMLAIAQPKAVMDGMDEWNTNQ 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   ++ L   V  A   ++  +F           I  N+I  D  +      R   
Sbjct: 66  HGKSGLTERVLNSAVSTAMAEQQTIEFLQQWVPAGKSPICGNSIGQDRRFLARYMPRLEA 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|254787466|ref|YP_003074895.1| oligoribonuclease [Teredinibacter turnerae T7901]
 gi|237686441|gb|ACR13705.1| oligoribonuclease [Teredinibacter turnerae T7901]
          Length = 182

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDY-LPDPEAVFI 60
           N+ +  D E  G     D   + A V  D     +     +   +P     L D      
Sbjct: 6   NNLIWVDLEMTGLVPERDFIIEIATVVTDEHLNILAEGPVMAIHQPDAVLDLMDEWCTNQ 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   Q+     V  A        F           +  N+I  D  + +    +   
Sbjct: 66  HGKSGLTQRVRDSDVTTANAEVATLAFLCEWVPAGKSPMCGNSIGQDRRFLQRFMPKLAD 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|153939051|ref|YP_001391011.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. Langeland]
 gi|152934947|gb|ABS40445.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. Langeland]
 gi|295319069|gb|ADF99446.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. 230613]
          Length = 195

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 53/197 (26%), Gaps = 10/197 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    +  D ET G +       Q      D  +   E          D    +  A  I
Sbjct: 1   MKK--IFIDTETTGLEP--GEIIQLTYCVCDINFRGEEKVFFAKNFFFDVDYIEESAEAI 56

Query: 61  TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            G + +K      G    + +  I       +   I +N      + +      N  +  
Sbjct: 57  HGFSVEKLKILSKGKKFKDLASEISSDLK--DGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114

Query: 119 RWSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +      +  +     R      P   +     +      L+        + V  HD
Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHD 174

Query: 177 AKADVYATLALVWLIRE 193
           A+ DV A ++  +  + 
Sbjct: 175 ARYDVAALVSCYYRAKR 191


>gi|323491900|ref|ZP_08097072.1| oligoribonuclease [Vibrio brasiliensis LMG 20546]
 gi|323313843|gb|EGA66935.1| oligoribonuclease [Vibrio brasiliensis LMG 20546]
          Length = 181

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
            + +  D E  G D    +  + A +  D +   +     +   +P ++     E    T
Sbjct: 6   QNLIWIDLEMTGLDPETHKVIEIATIVTDSELNILAEGPVLAIHQPEEELQKMDEWCTTT 65

Query: 62  GI---TPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
                   +     + E E  R+  +F           I  N++  D  +          
Sbjct: 66  HTGSGLVDRIRESKIDEQEAIRQTIEFLEKWVPKGKSPICGNSVGQDRRFLYKHMPELEQ 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|139438610|ref|ZP_01772126.1| Hypothetical protein COLAER_01124 [Collinsella aerofaciens ATCC
           25986]
 gi|133776149|gb|EBA39969.1| Hypothetical protein COLAER_01124 [Collinsella aerofaciens ATCC
           25986]
          Length = 206

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 56/194 (28%), Gaps = 23/194 (11%)

Query: 19  LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78
            +   +   V++D     +     F      + +  P    +TGI+              
Sbjct: 2   RNEIIEVGAVKLDYHGNVMGEFSQFVQTEFTEGVAFP-VRELTGISAVDTAMAD-PLYMV 59

Query: 79  SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138
            +R+  +    +  I+ ++        +     +    ++   W +  + +  +      
Sbjct: 60  IKRLSDWIGRYSAQIVCWSGTDRRQLMTECQAKQIDLAAFPTDWADLQAFYTSI------ 113

Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIE----HVNAHDAKADVYATLALVWLIREK 194
                                L D A   GIE      +AH A AD   T  L+  + + 
Sbjct: 114 -----------MDVGSHECVSLNDAATWFGIEFDESTGHAHSALADARVTAKLLKQVMDG 162

Query: 195 KPKLFEYLYDYRNK 208
             ++     + R +
Sbjct: 163 DYRVSPRAQEIRQR 176


>gi|331665829|ref|ZP_08366723.1| oligoribonuclease [Escherichia coli TA143]
 gi|331056880|gb|EGI28874.1| oligoribonuclease [Escherichia coli TA143]
          Length = 181

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|262371112|ref|ZP_06064434.1| oligoribonuclease [Acinetobacter johnsonii SH046]
 gi|262313998|gb|EEY95043.1| oligoribonuclease [Acinetobacter johnsonii SH046]
          Length = 184

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 11/131 (8%)

Query: 1   MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54
           M++      +  D E  G D   D+  + A +  D     +    V      D  L   D
Sbjct: 1   MSSTADTRLIWIDLEMTGLDTDNDQIIEVATIVTDDNLNILAEGPVLAVHQPDRVLNAMD 60

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
                  G +   ++  R  +   +  ++  +F        +  +  N+I  D  +   +
Sbjct: 61  EWNTRQHGQSGLIERVRRSKLTAQDAEQQTLEFLKKWVNPKSSPMCGNSICQDRRFLHRL 120

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 121 MPEMEQYFHYR 131


>gi|145631577|ref|ZP_01787343.1| oligoribonuclease [Haemophilus influenzae R3021]
 gi|144982777|gb|EDJ90303.1| oligoribonuclease [Haemophilus influenzae R3021]
          Length = 182

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 7/127 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   +R  + A +  D+    +    V      D  L   +     
Sbjct: 5   KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDGLLNKMNDWCQK 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
                   ++     + E     +   F           I  N+I  D  +         
Sbjct: 65  THSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLA 124

Query: 115 YDSYRWS 121
              +   
Sbjct: 125 DYFHYRH 131


>gi|325142622|gb|EGC65013.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           961-5945]
          Length = 405

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 46/166 (27%), Gaps = 26/166 (15%)

Query: 46  KPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
                       V +TGI+        V  AE +  +         C++  +N RFD  +
Sbjct: 1   MVNPQKPIPQFVVGLTGISDGMVADAPV-FAEIAGELFSVLK---GCVLVAHNSRFDYTF 56

Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
            ++ F+R                  +L  ++      P   +            L  +  
Sbjct: 57  LKHEFHRVGI----------GFSSPVLCSVQLSRCLYPQFYK----------HSLDSIIE 96

Query: 166 ANGIEHVNAHDAKADVYATLALVWLIREKK--PKLFEYLYDYRNKN 209
             GI   + H A ADV A    +     +          +   N  
Sbjct: 97  RLGIVVEDRHRAMADVSALCDYLEYSLSEHGVEAWIRQCFRLMNPK 142


>gi|289424061|ref|ZP_06425847.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289155486|gb|EFD04165.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 480

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 76/257 (29%), Gaps = 46/257 (17%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-------- 52
           +   +V +D E  G +   +   + +  +V   +E ++        P    +        
Sbjct: 18  LPKSYVSFDLEATG-NSKFNYMIEISAFKV-IDFEVVDEYSSLIRPPRSRKVTKSSRLLS 75

Query: 53  -----------PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
                       D     +TGI      +    EA+  ++   F       I+  + +  
Sbjct: 76  ECEEFGDKIYYIDKFIESLTGIDNISIHKAEK-EADVIKKFRDFV---GDSILVGHGVNN 131

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D    ++ + R F + +   + +  +    LD                        + L 
Sbjct: 132 DINLLKDTYMRVFGEEFTNKYIDTQALGVFLD---------------------DREYSLV 170

Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           +L     IE+++ H A +D Y T      + +     +  + D    N +    + QN  
Sbjct: 171 NLCNKYSIENIDTHRASSDAYRTNLCYINLYKDIEAKYSSIPDKLFANWIEDRHNKQNRI 230

Query: 222 PLVHVSGMFGASRSNTA 238
                     A   N+ 
Sbjct: 231 LKNRTMKSLNAKNWNSH 247


>gi|146088911|ref|XP_001466179.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070281|emb|CAM68618.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 509

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 61/226 (26%), Gaps = 29/226 (12%)

Query: 8   YDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +D E  G      D   +   +            ++ T     +P       P    +T 
Sbjct: 93  FDMEFTGPPVFTADGPTEDITELGLY-----SPLLDETFSCLVQPVCGRKQGPGVEELTH 147

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT     ++G+  AE  ++   F   P    I  +          +          +W+ 
Sbjct: 148 ITDMMLEKEGIPFAEAWQQFLNFVQTPQPDEI--SGSEERILLLSHGGKLADVSLIKWTL 205

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPS--RDDGATSFKLQDLALANG-IEHVNAHDAKA 179
           +  +       V         D  +      D    S+KL DL         + AH A  
Sbjct: 206 EKFHMELPPSFVFGDTIHLIRDAHRRRPVTIDKHPPSWKLVDLVQWLHIPPTLPAHRAGN 265

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
           D   T              ++ LY    +    ++   + + P   
Sbjct: 266 DARMT--------------WDALYHTLLRYGDDEMAPREQLVPRFF 297


>gi|332307350|ref|YP_004435201.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174679|gb|AEE23933.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 211

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D       + T  +   P +    +  A+   G
Sbjct: 18  VIVDVETAGFNAQTDALLEVAAITTKMDADGYLTPDKTFHYHVVPFEGANLEKAALEFNG 77

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P  ALR  + E E  + + +        +     ++  +N  FD  +      R+   
Sbjct: 78  IDPWCALRGALDETEVMKDLCKQIRKEQKDADCQRSVMVAHNAAFDLGFINAAIERSKIK 137

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +  +    +D   +                   G T       A     +   AH 
Sbjct: 138 ---RTPFHPFVSFDTTTLA--------------GLALGQTVLVKACQAANISFDQSEAHS 180

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  K
Sbjct: 181 ALYDTQKTAELYCYIVNK 198


>gi|302865700|ref|YP_003834337.1| exonuclease RNase T and DNA polymerase III [Micromonospora
           aurantiaca ATCC 27029]
 gi|302568559|gb|ADL44761.1| Exonuclease RNase T and DNA polymerase III [Micromonospora
           aurantiaca ATCC 27029]
          Length = 196

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 12/156 (7%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G D+  D   + A +  D     +           D+ L   PE V 
Sbjct: 1   MADLLVWIDCEMTGLDLRRDALIEVAALVTDPDLNVLGDGVDVVIHADDEALDGMPEIVR 60

Query: 60  I----TGITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
                +G+T ++     V  AE        +  +   P T  +  N+I  D  +      
Sbjct: 61  TMHAKSGLT-EEVRLSTVTLAEAEDMVLDYVTSYVKDPRTAPLCGNSIATDRGFLARDMT 119

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
           R   D++        S    L        +     +
Sbjct: 120 R--LDAHLHYRMIDVSSIKELCRRWYPRVYFGQPQK 153


>gi|293604208|ref|ZP_06686616.1| oligoribonuclease [Achromobacter piechaudii ATCC 43553]
 gi|292817433|gb|EFF76506.1| oligoribonuclease [Achromobacter piechaudii ATCC 43553]
          Length = 181

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 34/126 (26%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE---AVF 59
           N  V  D E  G D   +R  + A V  +     +    V       D L D        
Sbjct: 6   NRLVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVIH-QPDTLLDAMDNWNKS 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    K     V E++    +  F +         +  N I  D  +      R  
Sbjct: 65  THGKSGLIDKVRASTVSESQAEDTLLAFLAQHVPAGKSPLCGNTISQDRRFMFAYMPRLE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 QFFHYR 130


>gi|294665061|ref|ZP_06730367.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605179|gb|EFF48524.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 194

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 42/204 (20%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58
           +  +  D E  G D   D   + A +  D Q   +    E+    P +      EA+   
Sbjct: 9   DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDEW 64

Query: 59  --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
                  +   Q+ L   V  A+   +   F           +  N+I  D  +      
Sbjct: 65  NRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMS 124

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R     +           D+  +      ++P                      ANG   
Sbjct: 125 RLERYFHYR-------NLDVSTIKELARRWAPTV--------------------ANGFAK 157

Query: 172 VNAHDAKADVYATLALVWLIREKK 195
            +AH A +DV  ++  +   R+  
Sbjct: 158 SSAHTALSDVRDSIDELRHYRQFM 181


>gi|317049763|ref|YP_004117411.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
 gi|316951380|gb|ADU70855.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
          Length = 182

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 7  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 43


>gi|170766878|ref|ZP_02901331.1| oligoribonuclease [Escherichia albertii TW07627]
 gi|170124316|gb|EDS93247.1| oligoribonuclease [Escherichia albertii TW07627]
 gi|315617577|gb|EFU98183.1| exonuclease family protein [Escherichia coli 3431]
          Length = 181

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|269977107|ref|ZP_06184081.1| oligoribonuclease [Mobiluncus mulieris 28-1]
 gi|307700139|ref|ZP_07637185.1| oligoribonuclease [Mobiluncus mulieris FB024-16]
 gi|269934938|gb|EEZ91498.1| oligoribonuclease [Mobiluncus mulieris 28-1]
 gi|307614688|gb|EFN93911.1| oligoribonuclease [Mobiluncus mulieris FB024-16]
          Length = 208

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAV 58
           +T+  V  D E  G D+A D   +   +  D     +++      KP+   L +      
Sbjct: 8   LTDALVWVDCEMTGLDLATDELIEIGVIVTDFNLNPLDTGIDLLIKPSQTALDNMGDFVR 67

Query: 59  FIT---GITPQKALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
            +    G+  +      V EA  +    + +F        +  N++  D  + +   
Sbjct: 68  EMHTKSGLLDELDHGLPVTEAARQVLEYVQRFVPEAGKAPLAGNSVGTDKTFLKKQM 124


>gi|144898742|emb|CAM75606.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 173

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 48/184 (26%), Gaps = 31/184 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D+ET   D   D     A   V +     E+       P    +       I GIT
Sbjct: 3   FIALDFET--ADNGRDSACSLALAVV-KNGTVAETWHRLIRPPRASQMF----THIHGIT 55

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                        F   I           +  +N  FD          + + +    +  
Sbjct: 56  WDMVKDQP-DFGHFWPEIRDLIDAAP--FLAAHNAPFDKGVLAECCRAHGHGAPLTPF-- 110

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  + V R  +   P               KL D+         N HDA +D  A 
Sbjct: 111 ----VCTVRVARDTWNLRPT--------------KLPDVCRFLAQPL-NHHDALSDAVAC 151

Query: 185 LALV 188
             ++
Sbjct: 152 AEIM 155


>gi|71281998|ref|YP_270147.1| ribonuclease T [Colwellia psychrerythraea 34H]
 gi|71147738|gb|AAZ28211.1| ribonuclease T [Colwellia psychrerythraea 34H]
          Length = 231

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 60/199 (30%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWE--KIESTEVFFCKPADDYLPDPEAVFIT 61
           V+ D ET G +   D   + A   + +D       I+ T  F  +P +    +P+A+  T
Sbjct: 34  VVIDVETAGFNSQTDALLELAASVLHLDEDTGDFSIDETIQFNIEPFEGANLEPKALEFT 93

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           GI P   LR  V E E  + + +              II  +N  FD  +      R   
Sbjct: 94  GIDPTNPLRGAVDEDEALKDLFKLVRKKMKVAGCQRAIIVAHNAAFDLGFLNAATERCKI 153

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                    +A      +  AH
Sbjct: 154 KRSPFHSFVSFDTTTLAGLALGQTVLAKAC-----------------IAAKIDFNNSEAH 196

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  K
Sbjct: 197 SALYDTEKTAELFCHIVNK 215


>gi|21242783|ref|NP_642365.1| oligoribonuclease [Xanthomonas axonopodis pv. citri str. 306]
 gi|23821917|sp|Q8PKW8|ORN_XANAC RecName: Full=Oligoribonuclease
 gi|21108265|gb|AAM36901.1| oligoribonuclease [Xanthomonas axonopodis pv. citri str. 306]
          Length = 194

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58
           +  +  D E  G D   D   + A +  D Q   +    E+    P +      EA+   
Sbjct: 9   DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDEW 64

Query: 59  --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
                  +   Q+ +   V  A+   +   F S         +  N+I  D  +      
Sbjct: 65  NRNQHRRSGLWQRVIDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMS 124

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 125 RLERYFHYR 133


>gi|330989528|gb|EGH87631.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 225

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 68/207 (32%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +   +R +   E T  F  +P +    +P A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANVEPAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GI+     A
Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220


>gi|315125481|ref|YP_004067484.1| oligoribonuclease [Pseudoalteromonas sp. SM9913]
 gi|315013994|gb|ADT67332.1| oligoribonuclease [Pseudoalteromonas sp. SM9913]
          Length = 181

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 8/130 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            ++ +  D E  G +   D+  + A V  D     +          +D+ L   D     
Sbjct: 5   KSNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAEGPTIAIHQSDELLDGMDEWCTT 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +       EA    +   F           +  N+I  D  +    + R  
Sbjct: 65  QHGKSGLTARCKASTFDEAYAVEQTLAFLKQWVPAGASPMCGNSIGQDRRFMNK-YMREL 123

Query: 115 YDSYRWSWDN 124
            D + +   +
Sbjct: 124 EDFFHYRNLD 133


>gi|229597251|ref|YP_001908888.2| oligoribonuclease [Erwinia tasmaniensis Et1/99]
          Length = 187

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G +   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAE 42


>gi|156933577|ref|YP_001437493.1| exodeoxyribonuclease X [Cronobacter sakazakii ATCC BAA-894]
 gi|156531831|gb|ABU76657.1| hypothetical protein ESA_01397 [Cronobacter sakazakii ATCC BAA-894]
          Length = 220

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 70/265 (26%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V +      +            D     +A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGVVEVASVDI-IDGAIVNPMSDL---VRPDRPISHQAMAIHKITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E   R H       +     +N  FD         R         W    
Sbjct: 57  MVADKPYIE-EVIPRYH------GSQWYVAHNASFD---------RKVLPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R ++          S      S KLQ        E ++ H A  D Y T A
Sbjct: 97  --ICTVKLARRLWP-----GIRYSNMGLYKSLKLQVETP----EGLHHHRALFDCYITAA 145

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV-AW 245
           L+  I +      E + +   + QL   +                  +     +A +   
Sbjct: 146 LLLEIMKVSGWTPEEMVNITGRPQLIATLP---------------FGKYRGEPVADIAGR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   ++      +  +   L  
Sbjct: 191 DPGYLRWMLNNVKQLNPDLRLTLKH 215


>gi|119469142|ref|ZP_01612126.1| oligoribonuclease [Alteromonadales bacterium TW-7]
 gi|119447394|gb|EAW28662.1| oligoribonuclease [Alteromonadales bacterium TW-7]
          Length = 181

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 8/130 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            ++ +  D E  G + A D+  + A V  D     +          +D+ L   D     
Sbjct: 5   KSNLIWLDLEMTGLEPATDKILEIATVVTDADLNILAEGPTIAIHQSDELLNGMDEWCTT 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +       E     +  +F           +  N+I  D  +    + R  
Sbjct: 65  QHGKSGLTARCKASAFDEEYAVAQTLEFLKQWVPAGASPMCGNSIGQDRRFMNK-YMREL 123

Query: 115 YDSYRWSWDN 124
            D + +   +
Sbjct: 124 EDFFHYRNLD 133


>gi|114707008|ref|ZP_01439907.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506]
 gi|114537558|gb|EAU40683.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506]
          Length = 266

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 7  IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
          + D ET G  +  D   +   V +D     I +    FC P    +    A  +  IT +
Sbjct: 25 VIDTETAGLRLEEDAVIEIGSVDLDLVTGAIFNPMQTFCDP-GGAVISDGARRVHQITDE 83

Query: 67 KALRDGVVEAEFSRRIH 83
            +      ++  +  +
Sbjct: 84 MLVGAP-PFSDAVKPFN 99


>gi|58581832|ref|YP_200848.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623734|ref|YP_451106.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576613|ref|YP_001913542.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|81311869|sp|Q5H0Q8|ORN_XANOR RecName: Full=Oligoribonuclease
 gi|123522125|sp|Q2P3P5|ORN_XANOM RecName: Full=Oligoribonuclease
 gi|58426426|gb|AAW75463.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367674|dbj|BAE68832.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521065|gb|ACD59010.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 194

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 42/204 (20%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58
           +  +  D E  G D   D   + A +  D Q   +    E+    P +      EA+   
Sbjct: 9   DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDEW 64

Query: 59  --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
                  +   Q+ L   V  A+   +   F           +  N+I  D  +      
Sbjct: 65  NRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMS 124

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R     +           D+  +      ++P                      ANG   
Sbjct: 125 RLERYFHYR-------NLDVSTIKELARRWAPTV--------------------ANGFAK 157

Query: 172 VNAHDAKADVYATLALVWLIREKK 195
            +AH A +DV  ++  +   R+  
Sbjct: 158 SSAHTALSDVRDSINELRHYRQFM 181


>gi|58582091|ref|YP_201107.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623997|ref|YP_451369.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576299|ref|YP_001913228.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426685|gb|AAW75722.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367937|dbj|BAE69095.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520751|gb|ACD58696.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 211

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 58/207 (28%), Gaps = 31/207 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWE-KIESTEVFFCKPADDYL 52
           M+  F     V+ D ET G D       + A V +  D         T      PA    
Sbjct: 16  MSRRFRGYLPVVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLE 75

Query: 53  PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            DP+++ ITGI        A ++          +            I+  +N  FD  + 
Sbjct: 76  IDPKSLEITGIVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFL 135

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R  +    +      S +D + +    Y              G T       A  
Sbjct: 136 NAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARAAQAAG 178

Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
                 +AH A  D   T  L   I  
Sbjct: 179 LDWNAADAHSAVYDTEQTARLFCKIAN 205


>gi|251792379|ref|YP_003007105.1| oligoribonuclease [Aggregatibacter aphrophilus NJ8700]
 gi|247533772|gb|ACS97018.1| oligoribonuclease [Aggregatibacter aphrophilus NJ8700]
          Length = 181

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +           +    K ++  + 
Sbjct: 5   KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDELLNKMSEWCVK 64

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110
              A    G+  ++     + E     +   F        T  I  N++  D  +     
Sbjct: 65  THTA---NGL-VERVKMSKLNERAAELQTLGFLKKYVPKGTSPICGNSVAQDKRFLFKYM 120

Query: 111 YRNFYDSYRWS 121
                  +   
Sbjct: 121 PELADYFHYRH 131


>gi|300727261|ref|ZP_07060677.1| exonuclease [Prevotella bryantii B14]
 gi|299775499|gb|EFI72093.1| exonuclease [Prevotella bryantii B14]
          Length = 163

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 28/190 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   +           V V R  E ++S      +P  +Y  +     + 
Sbjct: 1   MQDFVSIDFET--ANNERSSVCSVGIVIV-RNGEIVDSFYSLI-QPEPNY-YNYWCSQVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+  +      V   +   +I           +  +N  FD+             +    
Sbjct: 56  GLCHEDTDDAPV-FPKVWAQIEPLIEN---LPLVAHNKPFDEGC---------LKAVFRV 102

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      ++  D +       PD              +LQ +A A G    + H A AD 
Sbjct: 103 YQMDYPDYEFYDTLCVSRRVLPDLEN----------HQLQTVAAACGYCLEDHHHALADA 152

Query: 182 YATLALVWLI 191
            A   +   I
Sbjct: 153 EACAWIAREI 162


>gi|149377531|ref|ZP_01895272.1| oligoribonuclease [Marinobacter algicola DG893]
 gi|149358223|gb|EDM46704.1| oligoribonuclease [Marinobacter algicola DG893]
          Length = 180

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 7/108 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62
            V  D E  G D   +R  + A +  D     IE   V     +D  L   D       G
Sbjct: 7   LVWIDLEMTGLDPEKERIIEIATIVTDSDLNTIEEGPVIAVHQSDKLLSEMDEWCTRTHG 66

Query: 63  IT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYY 105
            +   Q+       E +  ++  +F      P    +  N+I  D  +
Sbjct: 67  ESGLTQRVKDSKYGEIDAEQKTLEFLQRYLEPGQSPLCGNSIGQDRRF 114


>gi|269955883|ref|YP_003325672.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304564|gb|ACZ30114.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 212

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 7/113 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA----DDYLPDPEAV 58
           +  V  D E  G D   D   + A V  D +   ++        P     +        +
Sbjct: 8   DRIVWIDCEMTGLDARADALIEVAAVVTDSELNVLDDGIDVLIAPPAAALEGMGDFVRTM 67

Query: 59  FIT-GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
             T G+  + A    + EAE      I ++        +  N++  D  +   
Sbjct: 68  HTTSGLLDELAAGATLAEAEQQVLAYIKRWVPDAGKAPLAGNSVGTDKMFLDR 120


>gi|261253256|ref|ZP_05945829.1| hypothetical protein VIA_003281 [Vibrio orientalis CIP 102891]
 gi|260936647|gb|EEX92636.1| hypothetical protein VIA_003281 [Vibrio orientalis CIP 102891]
          Length = 176

 Score = 57.5 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 23/152 (15%)

Query: 1   MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPA 48
           M ++ V+ +D E          T G         +     +D    E ++  + ++ KP 
Sbjct: 1   MNHNRVVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLVNGEIVKRAQ-YYVKPE 53

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
            D +       +TGITP+K  + G    E  + + + F   N     +     DD     
Sbjct: 54  HDEV-SLFCSQLTGITPRKVEKQGRPLEEVLKSMVKNFGGANKIYAAW---GRDDRILIK 109

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
                  +     + N  + + + + ++    
Sbjct: 110 ECQDKGIEMPFNEFINLATLYRIQNRLKDKRI 141


>gi|325921805|ref|ZP_08183622.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas gardneri
           ATCC 19865]
 gi|325547682|gb|EGD18719.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas gardneri
           ATCC 19865]
          Length = 212

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58
           +  +  D E  G D   D   + A +  D Q   +    E+    P +      EA+   
Sbjct: 27  DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLEKL----EAMDEW 82

Query: 59  --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
                  +   Q+ L   V  A+   +   F S         +  N+I  D  +      
Sbjct: 83  NRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMS 142

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 143 RLERYFHYR 151


>gi|323975494|gb|EGB70595.1| exonuclease [Escherichia coli TW10509]
          Length = 181

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|237729098|ref|ZP_04559579.1| oligoribonuclease [Citrobacter sp. 30_2]
 gi|226908827|gb|EEH94745.1| oligoribonuclease [Citrobacter sp. 30_2]
          Length = 185

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 10 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 46


>gi|188030133|emb|CAO98019.1| Oligoribonuclease [Erwinia tasmaniensis Et1/99]
          Length = 193

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G +   DR  + A +  D     +  
Sbjct: 12 NNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAE 48


>gi|158428766|pdb|2IGI|A Chain A, Crystal Structure Of E. Coli Oligoribonuclease
 gi|158428767|pdb|2IGI|B Chain B, Crystal Structure Of E. Coli Oligoribonuclease
          Length = 180

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 5  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 41


>gi|170720300|ref|YP_001747988.1| ribonuclease T [Pseudomonas putida W619]
 gi|169758303|gb|ACA71619.1| ribonuclease T [Pseudomonas putida W619]
          Length = 224

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 63/215 (29%), Gaps = 31/215 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYL 52
           M   F     V+ D ET G + A D   + A V +  D +         F+  +P +   
Sbjct: 22  MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFYRVEPFEGAN 81

Query: 53  PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +  A+  TGI        A+ +     +  R + +          I+  +N  FD  + 
Sbjct: 82  IEAAALEFTGIKLDHPLRMAVSEENALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 141

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                RN      +   +      L  +       +          DG            
Sbjct: 142 NAAVTRNDLKRNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGR----------- 190

Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201
                  AH A+ D   T  L   I  +  ++  +
Sbjct: 191 ------EAHSARYDTEKTAELFCGIVNRWKEMGGW 219


>gi|148546859|ref|YP_001266961.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1]
 gi|148510917|gb|ABQ77777.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1]
          Length = 183

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 51/188 (27%), Gaps = 23/188 (12%)

Query: 6   VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D E T   G     +    +     V R+  +++  +  F KP       P    +T
Sbjct: 5   LVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQ-RFVKPRRRPQLTPFCRELT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYDSYRW 120
            I+            E      ++       +  + +   +D       + ++  DS   
Sbjct: 64  HISQADVDNA-APFREVWASFERWLGHHRGQLQAWVSWGDYDRQQLHQEWQQHGLDSLLR 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +  + N +               +G                 LA  +       H A  D
Sbjct: 123 TLPHINLKQRFAKARHLQRPTGLNGA--------------LQLAGMHFC--GQQHRALED 166

Query: 181 VYATLALV 188
              T  L+
Sbjct: 167 ARNTARLL 174


>gi|119593281|gb|EAW72875.1| hCG2005011, isoform CRA_g [Homo sapiens]
          Length = 284

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 34/209 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFA--GVR--------VDRQW-----EKIESTEVFFCKP 47
             FV  D E  G        A+ +   V          D          ++   +  C  
Sbjct: 56  ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMC-- 113

Query: 48  ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102
             +     +A  ITG++ +   +  + G  +    R +  F S      C++ +N   +D
Sbjct: 114 -PERPFTAKASEITGLSSEGLARCRKAG-FDGAVVRTLQAFLSRQAGPICLVAHNGFDYD 171

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
                    R      R +        D L  +R +      G +      G   + L  
Sbjct: 172 FPLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGS 222

Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190
           L       E   AH A+ DV+  L +   
Sbjct: 223 LFHRYFRAEPSAAHSAEGDVHTLLLIFLH 251


>gi|109716243|gb|ABG43103.1| 3'-5' exonuclease TREX2 long form [Homo sapiens]
          Length = 278

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 34/209 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFA--GVR--------VDRQW-----EKIESTEVFFCKP 47
             FV  D E  G        A+ +   V          D          ++   +  C  
Sbjct: 50  ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMC-- 107

Query: 48  ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102
             +     +A  ITG++ +   +  + G  +    R +  F S      C++ +N   +D
Sbjct: 108 -PERPFTAKASEITGLSSEGLARCRKAG-FDGAVVRTLQAFLSRQAGPICLVAHNGFDYD 165

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
                    R      R +        D L  +R +      G +      G   + L  
Sbjct: 166 FPLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGS 216

Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190
           L       E   AH A+ DV+  L +   
Sbjct: 217 LFHRYFRAEPSAAHSAEGDVHTLLLIFLH 245


>gi|161485837|ref|NP_710030.3| oligoribonuclease [Shigella flexneri 2a str. 301]
 gi|161486369|ref|NP_839708.2| oligoribonuclease [Shigella flexneri 2a str. 2457T]
 gi|229774924|ref|YP_691603.2| oligoribonuclease [Shigella flexneri 5 str. 8401]
 gi|41017443|sp|Q83IJ9|ORN_SHIFL RecName: Full=Oligoribonuclease
 gi|313646361|gb|EFS10823.1| exonuclease family protein [Shigella flexneri 2a str. 2457T]
 gi|332749041|gb|EGJ79464.1| exonuclease family protein [Shigella flexneri K-671]
 gi|332749309|gb|EGJ79730.1| exonuclease family protein [Shigella flexneri 4343-70]
 gi|332761883|gb|EGJ92157.1| exonuclease family protein [Shigella flexneri 2747-71]
 gi|332763212|gb|EGJ93455.1| oligoribonuclease monomer [Shigella flexneri 2930-71]
 gi|333009212|gb|EGK28668.1| exonuclease family protein [Shigella flexneri K-218]
 gi|333010312|gb|EGK29745.1| exonuclease family protein [Shigella flexneri VA-6]
 gi|333011977|gb|EGK31362.1| exonuclease family protein [Shigella flexneri K-304]
          Length = 181

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|63079718|ref|NP_542432.2| three prime repair exonuclease 2 [Homo sapiens]
 gi|114690568|ref|XP_001137293.1| PREDICTED: three prime repair exonuclease 2 isoform 1 [Pan
           troglodytes]
 gi|332861931|ref|XP_003317815.1| PREDICTED: three prime repair exonuclease 2 isoform 2 [Pan
           troglodytes]
 gi|12751317|gb|AAK07617.1|AF319570_2 3'-5' exonuclease TREX2 [Homo sapiens]
 gi|12751323|gb|AAK07620.1|AF319573_2 3'-5' exonuclease TREX2 [Homo sapiens]
 gi|5731109|gb|AAD48776.1| 3'-5' exonuclease TREX2 [Homo sapiens]
 gi|71648780|gb|AAZ38719.1| three prime repair exonuclease 2 [Homo sapiens]
 gi|162317630|gb|AAI56245.1| Three prime repair exonuclease 2 [synthetic construct]
 gi|162318146|gb|AAI57022.1| Three prime repair exonuclease 2 [synthetic construct]
 gi|261860926|dbj|BAI46985.1| three prime repair exonuclease 2 [synthetic construct]
          Length = 236

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 34/209 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFA--GVR--------VDRQW-----EKIESTEVFFCKP 47
             FV  D E  G        A+ +   V          D          ++   +  C  
Sbjct: 8   ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMC-- 65

Query: 48  ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102
             +     +A  ITG++ +   +  + G  +    R +  F S      C++ +N   +D
Sbjct: 66  -PERPFTAKASEITGLSSEGLARCRKAG-FDGAVVRTLQAFLSRQAGPICLVAHNGFDYD 123

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
                    R      R +        D L  +R +      G +      G   + L  
Sbjct: 124 FPLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGS 174

Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190
           L       E   AH A+ DV+  L +   
Sbjct: 175 LFHRYFRAEPSAAHSAEGDVHTLLLIFLH 203


>gi|47606206|sp|Q9BQ50|TREX2_HUMAN RecName: Full=Three prime repair exonuclease 2; AltName: Full=3'-5'
           exonuclease TREX2
 gi|12751319|gb|AAK07618.1|AF319571_2 3'-5' exonuclease TREX2-like protein [Homo sapiens]
 gi|12751321|gb|AAK07619.1|AF319572_2 3'-5' exonuclease TREX2-like protein [Homo sapiens]
 gi|119593276|gb|EAW72870.1| hCG2005011, isoform CRA_c [Homo sapiens]
          Length = 279

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 34/209 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFA--GVR--------VDRQW-----EKIESTEVFFCKP 47
             FV  D E  G        A+ +   V          D          ++   +  C  
Sbjct: 51  ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMC-- 108

Query: 48  ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102
             +     +A  ITG++ +   +  + G  +    R +  F S      C++ +N   +D
Sbjct: 109 -PERPFTAKASEITGLSSEGLARCRKAG-FDGAVVRTLQAFLSRQAGPICLVAHNGFDYD 166

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
                    R      R +        D L  +R +      G +      G   + L  
Sbjct: 167 FPLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGS 217

Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190
           L       E   AH A+ DV+  L +   
Sbjct: 218 LFHRYFRAEPSAAHSAEGDVHTLLLIFLH 246


>gi|150015369|ref|YP_001307623.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901834|gb|ABR32667.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 303

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 19/175 (10%)

Query: 19  LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78
            +   +   V+VD+  + I+     + KP    + +P    IT I        GV   E 
Sbjct: 36  ENEIIEIGAVKVDKYMKPIKEIRE-YIKPKIFPVINPIVTEITKIDMDILNEKGVSFEEA 94

Query: 79  SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138
             ++   F   +  ++             N  + N+ D         N   D+ + +  I
Sbjct: 95  ISKLKDMFEDGD--VLCSWAKDDVAELIINAHHYNYNDLRWL-----NEYLDIQEYVTKI 147

Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE 193
            A         + D+               ++    HDA  D   T+ +   +  
Sbjct: 148 LAHKKALGLKSALDELKIK-----------VDDTKLHDALNDAKYTVEVFRRVYN 191


>gi|149374321|ref|ZP_01892095.1| ribonuclease T [Marinobacter algicola DG893]
 gi|149361024|gb|EDM49474.1| ribonuclease T [Marinobacter algicola DG893]
          Length = 211

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 58/210 (27%), Gaps = 35/210 (16%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVR--VDRQWEKI-ESTEVFFCKPADDYL 52
           M+  F     V+ D ET G +   D   + A V   +D         T V    P +   
Sbjct: 1   MSRRFRGFLPVVVDVETGGFNPEKDALLEIAAVILTMDDDGWLKRAETHVQQIDPFEGAN 60

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS 106
            +  A+  TGI P    R+ V E E    I                ++  +N  FD  + 
Sbjct: 61  LEQSALDFTGIDPWNPEREAVPEREGMSEIFGPIRKAVKAHDCKRAVLVGHNATFDHNFV 120

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R+          N    +   D            +             L      
Sbjct: 121 FAAALRSDI------RRNPFHPFSTFDTATLAGLAYGHTV-------------LAQACKL 161

Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREK 194
            GI   N  AH A  D   T  L   I  +
Sbjct: 162 AGIPFSNKDAHSAAYDAEKTADLFCGIVNR 191


>gi|191173402|ref|ZP_03034931.1| oligoribonuclease [Escherichia coli F11]
 gi|190906378|gb|EDV65988.1| oligoribonuclease [Escherichia coli F11]
          Length = 181

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|329770482|ref|ZP_08261860.1| hypothetical protein HMPREF0433_01624 [Gemella sanguinis M325]
 gi|328836231|gb|EGF85900.1| hypothetical protein HMPREF0433_01624 [Gemella sanguinis M325]
          Length = 614

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 37/229 (16%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M N  F + D E            QF+  ++   ++KI S + ++ KP  +         
Sbjct: 1   MKNKPFCVVDIELT----EDKEIIQFSATKLSIDFKKISSID-YYVKPKKE--ISSFVSE 53

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            TGITP+      +   E +  I+++      C +  + ++ D    +  F +       
Sbjct: 54  FTGITPEMLEDKPL-FKEIAYGIYEYIKD---CTLVCHGLQSDYLVIKKNFMKVGIKYI- 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAK 178
                     D +++ R                    S++L DL+ +         H+A 
Sbjct: 109 -----PYRTVDTVELARI-------------LFPTQKSYRLVDLSNSLNLYSGTGYHNAL 150

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
            DV  T+ L+  I EK         D  N  ++++++  +        +
Sbjct: 151 IDVEVTVNLLKKIAEKIQN-----IDESNYLKVKEILKRKETGYFEFFN 194


>gi|30043801|gb|AAP19520.1| hypothetical protein S4584 [Shigella flexneri 2a str. 2457T]
 gi|56384132|gb|AAN45737.2| orf, conserved hypothetical protein [Shigella flexneri 2a str.
          301]
 gi|110617631|gb|ABF06298.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|281603627|gb|ADA76611.1| Oligoribonuclease [Shigella flexneri 2002017]
          Length = 204

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 29 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65


>gi|302844761|ref|XP_002953920.1| hypothetical protein VOLCADRAFT_44726 [Volvox carteri f.
           nagariensis]
 gi|300260732|gb|EFJ44949.1| hypothetical protein VOLCADRAFT_44726 [Volvox carteri f.
           nagariensis]
          Length = 201

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 51/194 (26%), Gaps = 30/194 (15%)

Query: 5   FVIYDYETF-----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
           F++ D E                 + + + +D      +   +    +P +  L DP  V
Sbjct: 3   FLVLDLEATCTKCRSLYPI--EIIEVSALLLDAHSLATLGEFQS-HVRPTEHPLLDPFCV 59

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI  ++     +   +   R  Q+                          ++     
Sbjct: 60  ELTGIEQEQVDTAPL-LGDVLLRFQQWLEGLGA----------------FGGAKSLLPVT 102

Query: 119 RWSWDNGNS---RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNA 174
              WD             + R  Y      ++         +  LQ    A G+     A
Sbjct: 103 WTDWDLKICLETECGWRQLPRPPYLRRWCNLKRVYGARYRRASSLQKCVEALGLRWQGRA 162

Query: 175 HDAKADVYATLALV 188
           H+   D   T  L 
Sbjct: 163 HNGLDDSRNTAMLA 176


>gi|260913837|ref|ZP_05920311.1| oligoribonuclease [Pasteurella dagmatis ATCC 43325]
 gi|260631924|gb|EEX50101.1| oligoribonuclease [Pasteurella dagmatis ATCC 43325]
          Length = 184

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 9/127 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D   +R  + A +  D+    +    V     +D+ L          
Sbjct: 6   QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLRKMSEWCTKT 65

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+  ++     + E     +   F           I  N++  D  +         
Sbjct: 66  HTENGL-VERVKNSKLTERAAELQTIDFLKKWVPKGVSPICGNSVSQDKRFLFKYMPELA 124

Query: 115 YDSYRWS 121
              +   
Sbjct: 125 DYFHYRH 131


>gi|159528144|ref|YP_001542707.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii]
 gi|159157989|dbj|BAF92678.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii]
          Length = 306

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 29/185 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           I D ET G D   D   +   +     +     +     +    A      PE   ITGI
Sbjct: 47  IIDLETMGMDATQDEIIEIGMLSFSFSNEDG-ILGIKHTYNELNAPGKPIPPEITKITGI 105

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  +   +      + + +      + +I  +N  FD  +      ++          
Sbjct: 106 RNEDVIGKTINWNFVLQVLKE------SHLIICHNAGFDRNFLELQTPQDIQKQIITL-- 157

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                            F         ++    S KL  L    G    + H A  D +A
Sbjct: 158 ----------------PFGCTIKDIDWKERDYESSKLDYLNWKLGY-FYDGHRAINDCWA 200

Query: 184 TLALV 188
           TL L+
Sbjct: 201 TLNLL 205


>gi|146310013|ref|YP_001175087.1| oligoribonuclease [Enterobacter sp. 638]
 gi|166918639|sp|A4W5Q6|ORN_ENT38 RecName: Full=Oligoribonuclease
 gi|145316889|gb|ABP59036.1| Exonuclease, RNase T and DNA polymerase III [Enterobacter sp.
          638]
          Length = 181

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|89110885|ref|AP_004665.1| oligoribonuclease [Escherichia coli str. K-12 substr. W3110]
 gi|90111697|ref|NP_418586.4| oligoribonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|157155866|ref|YP_001465662.1| oligoribonuclease [Escherichia coli E24377A]
 gi|157163628|ref|YP_001460946.1| oligoribonuclease [Escherichia coli HS]
 gi|161486014|ref|NP_757097.2| oligoribonuclease [Escherichia coli CFT073]
 gi|161949984|ref|YP_405804.2| oligoribonuclease [Shigella dysenteriae Sd197]
 gi|161986383|ref|YP_313069.2| oligoribonuclease [Shigella sonnei Ss046]
 gi|170021825|ref|YP_001726779.1| oligoribonuclease [Escherichia coli ATCC 8739]
 gi|170083611|ref|YP_001732931.1| oligoribonuclease [Escherichia coli str. K-12 substr. DH10B]
 gi|170681955|ref|YP_001746560.1| oligoribonuclease [Escherichia coli SMS-3-5]
 gi|187730220|ref|YP_001882856.1| oligoribonuclease [Shigella boydii CDC 3083-94]
 gi|188495936|ref|ZP_03003206.1| oligoribonuclease [Escherichia coli 53638]
 gi|191165629|ref|ZP_03027469.1| oligoribonuclease [Escherichia coli B7A]
 gi|193065728|ref|ZP_03046792.1| oligoribonuclease [Escherichia coli E22]
 gi|194428928|ref|ZP_03061461.1| oligoribonuclease [Escherichia coli B171]
 gi|194437211|ref|ZP_03069309.1| oligoribonuclease [Escherichia coli 101-1]
 gi|215489509|ref|YP_002331940.1| oligoribonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|218556717|ref|YP_002389631.1| oligoribonuclease [Escherichia coli IAI1]
 gi|218561324|ref|YP_002394237.1| oligoribonuclease [Escherichia coli S88]
 gi|218692499|ref|YP_002400711.1| oligoribonuclease [Escherichia coli ED1a]
 gi|218697914|ref|YP_002405581.1| oligoribonuclease [Escherichia coli 55989]
 gi|218702862|ref|YP_002410491.1| oligoribonuclease [Escherichia coli IAI39]
 gi|218707776|ref|YP_002415295.1| oligoribonuclease [Escherichia coli UMN026]
 gi|229560203|ref|YP_672251.2| oligoribonuclease [Escherichia coli 536]
 gi|229775946|ref|YP_859834.2| oligoribonuclease [Escherichia coli APEC O1]
 gi|238903272|ref|YP_002929068.1| oligoribonuclease [Escherichia coli BW2952]
 gi|253775210|ref|YP_003038041.1| oligoribonuclease [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254164094|ref|YP_003047202.1| oligoribonuclease [Escherichia coli B str. REL606]
 gi|256019810|ref|ZP_05433675.1| oligoribonuclease [Shigella sp. D9]
 gi|256025100|ref|ZP_05438965.1| oligoribonuclease [Escherichia sp. 4_1_40B]
 gi|260846995|ref|YP_003224773.1| oligoribonuclease Orn [Escherichia coli O103:H2 str. 12009]
 gi|260858318|ref|YP_003232209.1| oligoribonuclease Orn [Escherichia coli O26:H11 str. 11368]
 gi|260870927|ref|YP_003237329.1| oligoribonuclease Orn [Escherichia coli O111:H- str. 11128]
 gi|293402792|ref|ZP_06646889.1| oligoribonuclease [Escherichia coli FVEC1412]
 gi|293407892|ref|ZP_06651732.1| oligoribonuclease [Escherichia coli B354]
 gi|293417668|ref|ZP_06660290.1| orn oligoribonuclease [Escherichia coli B185]
 gi|293476475|ref|ZP_06664883.1| orn [Escherichia coli B088]
 gi|297518431|ref|ZP_06936817.1| oligoribonuclease [Escherichia coli OP50]
 gi|298378322|ref|ZP_06988206.1| oligoribonuclease [Escherichia coli FVEC1302]
 gi|301027985|ref|ZP_07191269.1| exonuclease [Escherichia coli MS 196-1]
 gi|306815620|ref|ZP_07449769.1| oligoribonuclease [Escherichia coli NC101]
 gi|307140859|ref|ZP_07500215.1| oligoribonuclease [Escherichia coli H736]
 gi|307312001|ref|ZP_07591638.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|309787669|ref|ZP_07682280.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|312965838|ref|ZP_07780064.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|312974028|ref|ZP_07788199.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|331644912|ref|ZP_08346029.1| oligoribonuclease [Escherichia coli H736]
 gi|331650290|ref|ZP_08351362.1| oligoribonuclease [Escherichia coli M605]
 gi|331655993|ref|ZP_08356981.1| oligoribonuclease [Escherichia coli M718]
 gi|331660740|ref|ZP_08361672.1| oligoribonuclease [Escherichia coli TA206]
 gi|331671070|ref|ZP_08371903.1| oligoribonuclease [Escherichia coli TA271]
 gi|331671316|ref|ZP_08372114.1| oligoribonuclease [Escherichia coli TA280]
 gi|331680295|ref|ZP_08380954.1| oligoribonuclease [Escherichia coli H591]
 gi|331681184|ref|ZP_08381821.1| oligoribonuclease [Escherichia coli H299]
 gi|67469688|sp|P0A784|ORN_ECOLI RecName: Full=Oligoribonuclease
 gi|67469689|sp|P0A785|ORN_ECOL6 RecName: Full=Oligoribonuclease
 gi|166918637|sp|A7ZV33|ORN_ECO24 RecName: Full=Oligoribonuclease
 gi|166918638|sp|A8A7Q9|ORN_ECOHS RecName: Full=Oligoribonuclease
 gi|85676916|dbj|BAE78166.1| oligoribonuclease [Escherichia coli str. K12 substr. W3110]
 gi|87082382|gb|AAC77122.2| oligoribonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|157069308|gb|ABV08563.1| oligoribonuclease [Escherichia coli HS]
 gi|157077896|gb|ABV17604.1| oligoribonuclease [Escherichia coli E24377A]
 gi|169756753|gb|ACA79452.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC
          8739]
 gi|169891446|gb|ACB05153.1| oligoribonuclease [Escherichia coli str. K-12 substr. DH10B]
 gi|170519673|gb|ACB17851.1| oligoribonuclease [Escherichia coli SMS-3-5]
 gi|187427212|gb|ACD06486.1| oligoribonuclease [Shigella boydii CDC 3083-94]
 gi|188491135|gb|EDU66238.1| oligoribonuclease [Escherichia coli 53638]
 gi|190904324|gb|EDV64033.1| oligoribonuclease [Escherichia coli B7A]
 gi|192926597|gb|EDV81227.1| oligoribonuclease [Escherichia coli E22]
 gi|194412981|gb|EDX29270.1| oligoribonuclease [Escherichia coli B171]
 gi|194423767|gb|EDX39756.1| oligoribonuclease [Escherichia coli 101-1]
 gi|215267581|emb|CAS12036.1| oligoribonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|218354646|emb|CAV01632.1| oligoribonuclease [Escherichia coli 55989]
 gi|218363486|emb|CAR01140.1| oligoribonuclease [Escherichia coli IAI1]
 gi|218368093|emb|CAR05900.1| oligoribonuclease [Escherichia coli S88]
 gi|218372848|emb|CAR20727.1| oligoribonuclease [Escherichia coli IAI39]
 gi|218430063|emb|CAR10906.1| oligoribonuclease [Escherichia coli ED1a]
 gi|218434873|emb|CAR15811.1| oligoribonuclease [Escherichia coli UMN026]
 gi|222035935|emb|CAP78680.1| Oligoribonuclease [Escherichia coli LF82]
 gi|238861937|gb|ACR63935.1| oligoribonuclease [Escherichia coli BW2952]
 gi|242379688|emb|CAQ34511.1| oligoribonuclease monomer, subunit of oligoribonuclease
          [Escherichia coli BL21(DE3)]
 gi|253326254|gb|ACT30856.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253975995|gb|ACT41666.1| oligoribonuclease [Escherichia coli B str. REL606]
 gi|253980151|gb|ACT45821.1| oligoribonuclease [Escherichia coli BL21(DE3)]
 gi|257756967|dbj|BAI28469.1| oligoribonuclease Orn [Escherichia coli O26:H11 str. 11368]
 gi|257762142|dbj|BAI33639.1| oligoribonuclease Orn [Escherichia coli O103:H2 str. 12009]
 gi|257767283|dbj|BAI38778.1| oligoribonuclease Orn [Escherichia coli O111:H- str. 11128]
 gi|260451008|gb|ACX41430.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1]
 gi|284924347|emb|CBG37463.1| oligoribonuclease [Escherichia coli 042]
 gi|291320928|gb|EFE60370.1| orn [Escherichia coli B088]
 gi|291429707|gb|EFF02721.1| oligoribonuclease [Escherichia coli FVEC1412]
 gi|291430386|gb|EFF03384.1| orn oligoribonuclease [Escherichia coli B185]
 gi|291472143|gb|EFF14625.1| oligoribonuclease [Escherichia coli B354]
 gi|294490725|gb|ADE89481.1| oligoribonuclease [Escherichia coli IHE3034]
 gi|298280656|gb|EFI22157.1| oligoribonuclease [Escherichia coli FVEC1302]
 gi|299878895|gb|EFI87106.1| exonuclease [Escherichia coli MS 196-1]
 gi|305851282|gb|EFM51737.1| oligoribonuclease [Escherichia coli NC101]
 gi|306907808|gb|EFN38309.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|307556332|gb|ADN49107.1| oligoribonuclease [Escherichia coli ABU 83972]
 gi|307629236|gb|ADN73540.1| oligoribonuclease [Escherichia coli UM146]
 gi|308924419|gb|EFP69915.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|309704670|emb|CBJ04020.1| oligoribonuclease [Escherichia coli ETEC H10407]
 gi|310331562|gb|EFP98818.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|312289081|gb|EFR16975.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|312948814|gb|ADR29641.1| oligoribonuclease [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063479|gb|ADT77806.1| oligoribonuclease [Escherichia coli W]
 gi|315138719|dbj|BAJ45878.1| oligoribonuclease [Escherichia coli DH1]
 gi|320173681|gb|EFW48871.1| 3'-to-5' oligoribonuclease (orn) [Shigella dysenteriae CDC
          74-1112]
 gi|320193545|gb|EFW68182.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli WV_060327]
 gi|323156018|gb|EFZ42180.1| exonuclease family protein [Escherichia coli EPECa14]
 gi|323166646|gb|EFZ52404.1| exonuclease family protein [Shigella sonnei 53G]
 gi|323171596|gb|EFZ57242.1| exonuclease family protein [Escherichia coli LT-68]
 gi|323176077|gb|EFZ61669.1| exonuclease family protein [Escherichia coli 1180]
 gi|323182271|gb|EFZ67681.1| exonuclease family protein [Escherichia coli 1357]
 gi|323189956|gb|EFZ75234.1| exonuclease family protein [Escherichia coli RN587/1]
 gi|323380442|gb|ADX52710.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli
          KO11]
 gi|323935480|gb|EGB31818.1| exonuclease [Escherichia coli E1520]
 gi|323940084|gb|EGB36278.1| exonuclease [Escherichia coli E482]
 gi|323946101|gb|EGB42137.1| exonuclease [Escherichia coli H120]
 gi|323950766|gb|EGB46644.1| exonuclease [Escherichia coli H252]
 gi|323955595|gb|EGB51358.1| exonuclease [Escherichia coli H263]
 gi|323960351|gb|EGB55990.1| exonuclease [Escherichia coli H489]
 gi|323965551|gb|EGB61005.1| exonuclease [Escherichia coli M863]
 gi|323970580|gb|EGB65839.1| exonuclease [Escherichia coli TA007]
 gi|324118730|gb|EGC12622.1| exonuclease [Escherichia coli E1167]
 gi|327250105|gb|EGE61824.1| exonuclease family protein [Escherichia coli STEC_7v]
 gi|330908507|gb|EGH37026.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli AA86]
 gi|331035887|gb|EGI08125.1| oligoribonuclease [Escherichia coli H736]
 gi|331040684|gb|EGI12842.1| oligoribonuclease [Escherichia coli M605]
 gi|331046347|gb|EGI18437.1| oligoribonuclease [Escherichia coli M718]
 gi|331051782|gb|EGI23821.1| oligoribonuclease [Escherichia coli TA206]
 gi|331061659|gb|EGI33585.1| oligoribonuclease [Escherichia coli TA271]
 gi|331071161|gb|EGI42518.1| oligoribonuclease [Escherichia coli TA280]
 gi|331071758|gb|EGI43094.1| oligoribonuclease [Escherichia coli H591]
 gi|331081405|gb|EGI52566.1| oligoribonuclease [Escherichia coli H299]
 gi|332346241|gb|AEE59575.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 181

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|209522085|ref|ZP_03270737.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. H160]
 gi|209497475|gb|EDZ97678.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. H160]
          Length = 251

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 13/173 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + V  D E  G +   DR  + A V  +   +++    V     +D+ L   D       
Sbjct: 67  NLVWLDMEMTGLEPDTDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAKMDEWNQNTH 126

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111
           G +    +     V EA+ + +I +F      P    +  N+I  D  +          +
Sbjct: 127 GRSGLIDRVKASTVSEADATAQIREFLGQYVPPGKSPMCGNSICQDRRFMARWMPELESF 186

Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
            ++ +    +      RW  ++       A            D    ++   L
Sbjct: 187 FHYRNLDVSTLKELCRRWQPVIYKGFQKRAMHTALADIHESIDELKYYREHFL 239


>gi|110346113|gb|ABG72350.1| oligoribonuclease [Escherichia coli 536]
          Length = 229

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 54 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 90


>gi|212710150|ref|ZP_03318278.1| hypothetical protein PROVALCAL_01204 [Providencia alcalifaciens DSM
           30120]
 gi|212687149|gb|EEB46677.1| hypothetical protein PROVALCAL_01204 [Providencia alcalifaciens DSM
           30120]
          Length = 180

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N+ +  D E  G D   DR  + A +  D     +    V      ++ L   +   +  
Sbjct: 6   NNLIWIDLEMTGLDPIRDRIIEIATIVTDSNLNILAEGPVIAVHQTEEQLALMDEWNVNT 65

Query: 63  ITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            T     ++  +  + E E      +F           I  N++  D  +  N       
Sbjct: 66  HTNSGLVERIRKSVISEREAELATIEFLEKWVPKGVSPICGNSVGQDRRFLFNYMPELES 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|300920814|ref|ZP_07137214.1| exonuclease [Escherichia coli MS 115-1]
 gi|537006|gb|AAA97061.1| ORF_o204a [Escherichia coli str. K-12 substr. MG1655]
 gi|73858127|gb|AAZ90834.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81243603|gb|ABB64313.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|115515635|gb|ABJ03710.1| oligoribonuclease [Escherichia coli APEC O1]
 gi|300412206|gb|EFJ95516.1| exonuclease [Escherichia coli MS 115-1]
          Length = 204

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 29 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65


>gi|84393062|ref|ZP_00991828.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
 gi|84376314|gb|EAP93196.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
          Length = 210

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 21/202 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N +V  D ET   D         A  ++            F  +       D  ++ I  
Sbjct: 28  NEYVSLDCETTSLDPNQAELVTIAATKIIGNRIITSQP--FEVRLRAPQSLDCNSIKIHR 85

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  Q   + G+ E +    +  F    N  ++GY+         R    +  +       
Sbjct: 86  IRHQDL-KHGIEEKQALIELLNFI--GNRPLVGYHIRYDKKILDRACLKQLGFPLPNRLV 142

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADV 181
           +      D L+       F                  +  +     +    N HDA  D 
Sbjct: 143 EVSQLYQDKLERQLPNAYF---------------DLSIDAICRQLDLPIPVNKHDALQDA 187

Query: 182 YATLALVWLIREKKPKLFEYLY 203
            +   +   ++      F   Y
Sbjct: 188 ISAALIFVRLKHGDLPRFNSSY 209


>gi|227538997|ref|ZP_03969046.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241200|gb|EEI91215.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 203

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             F+  D+E  T     A +       VRVD+     +        P ++Y+       +
Sbjct: 4   QSFIAIDFELAT----AAYNSVCSVGIVRVDQ-GVITDEFYSLVKPPKNEYMWQ--TTRV 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI P+        E E   +I           +  +N +FD             D    
Sbjct: 57  HGIKPKDTADAPTFE-EIYPKIKDLLQNKK---MVAHNEKFDREVLSKTMKACGLD---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            +   +         +               D G    KL       GI+  N H+A +D
Sbjct: 109 -YRELHLPVMWECTSKIYR------------DKGFKKTKLNLCCEIMGIDL-NHHEALSD 154

Query: 181 VYATLALVWLIREKKPKLFEYLY 203
             A   L     E   +L + ++
Sbjct: 155 AKAAAFLYLKQNEVTQELLDRVF 177


>gi|209921653|ref|YP_002295737.1| oligoribonuclease [Escherichia coli SE11]
 gi|209914912|dbj|BAG79986.1| oligoribonuclease [Escherichia coli SE11]
 gi|320200705|gb|EFW75291.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli EC4100B]
          Length = 181

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|166711531|ref|ZP_02242738.1| ribonuclease T [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 211

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 58/207 (28%), Gaps = 31/207 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWE-KIESTEVFFCKPADDYL 52
           M+  F     V+ D ET G D       + A V +  D         T      PA    
Sbjct: 16  MSRRFRGYLPVVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLE 75

Query: 53  PDPEAVFITGITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +P+++ ITGI        A ++          +            I+  +N  FD  + 
Sbjct: 76  IEPKSLEITGIVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFL 135

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R  +    +      S +D + +    Y              G T       A  
Sbjct: 136 NAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARAAQAAG 178

Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
                 +AH A  D   T  L   I  
Sbjct: 179 LDWNAADAHSAVYDTEQTARLFCKIAN 205


>gi|313808696|gb|EFS47150.1| exonuclease [Propionibacterium acnes HL087PA2]
          Length = 210

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 36/200 (18%)

Query: 3   NHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
             FV  D+ET     G         Q A V+V    + ++        P        E  
Sbjct: 41  PSFVAVDFETANRMGGVSA-----CQVAMVKV-LDGQIVDRLNTLIRPPKGWD--SFEFT 92

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           ++ GI+              +  +  F    +   +  +N  FD    R        D +
Sbjct: 93  YLHGISAADVADAPG-WINIADTVSHFV---DGATVYAHNAAFDSRVWRQ------LDEH 142

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177
             +       +      +                 G  ++KL  +  A    +  N H A
Sbjct: 143 FGTTTLPAPFFCSYRTAQ-------------RLIPGLPNYKLPTVLHACAPNYQLNHHRA 189

Query: 178 KADVYATLALVWLIREKKPK 197
            +D  A   +V  ++ +   
Sbjct: 190 DSDAKACALIVCELQRRAQT 209


>gi|302545204|ref|ZP_07297546.1| oligoribonuclease [Streptomyces hygroscopicus ATCC 53653]
 gi|302462822|gb|EFL25915.1| oligoribonuclease [Streptomyces himastatinicus ATCC 53653]
          Length = 202

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 57/206 (27%), Gaps = 45/206 (21%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  ++ D   + A +  D +   +        +P  + L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGDGVDIVVRPPAESLTTMPEVVR 60

Query: 60  ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
                 +     G+             EA+    I +         +  N++  D  +  
Sbjct: 61  ------EMHTASGLLAELDGGTTLADAEAQVLAYIREHVPDAGKAPLCGNSVSTDRGF-- 112

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
                   D             D+  V      + P                    A  N
Sbjct: 113 -----LLRDMPTLEAYLHYRIVDVSSVKELARRWYPR-------------------AYFN 148

Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
             +    H A AD++ ++A +   RE
Sbjct: 149 SPKKNGNHRALADIHESIAELRYYRE 174


>gi|289425017|ref|ZP_06426796.1| exonuclease [Propionibacterium acnes SK187]
 gi|289427636|ref|ZP_06429348.1| exonuclease [Propionibacterium acnes J165]
 gi|295131251|ref|YP_003581914.1| exonuclease [Propionibacterium acnes SK137]
 gi|289154716|gb|EFD03402.1| exonuclease [Propionibacterium acnes SK187]
 gi|289159127|gb|EFD07319.1| exonuclease [Propionibacterium acnes J165]
 gi|291376299|gb|ADE00154.1| exonuclease [Propionibacterium acnes SK137]
 gi|313763263|gb|EFS34627.1| exonuclease [Propionibacterium acnes HL013PA1]
 gi|313773241|gb|EFS39207.1| exonuclease [Propionibacterium acnes HL074PA1]
 gi|313793400|gb|EFS41458.1| exonuclease [Propionibacterium acnes HL110PA1]
 gi|313801125|gb|EFS42391.1| exonuclease [Propionibacterium acnes HL110PA2]
 gi|313810334|gb|EFS48050.1| exonuclease [Propionibacterium acnes HL083PA1]
 gi|313812157|gb|EFS49871.1| exonuclease [Propionibacterium acnes HL025PA1]
 gi|313814708|gb|EFS52422.1| exonuclease [Propionibacterium acnes HL059PA1]
 gi|313817876|gb|EFS55590.1| exonuclease [Propionibacterium acnes HL046PA2]
 gi|313819789|gb|EFS57503.1| exonuclease [Propionibacterium acnes HL036PA1]
 gi|313823447|gb|EFS61161.1| exonuclease [Propionibacterium acnes HL036PA2]
 gi|313824920|gb|EFS62634.1| exonuclease [Propionibacterium acnes HL063PA1]
 gi|313828254|gb|EFS65968.1| exonuclease [Propionibacterium acnes HL063PA2]
 gi|313830174|gb|EFS67888.1| exonuclease [Propionibacterium acnes HL007PA1]
 gi|313833097|gb|EFS70811.1| exonuclease [Propionibacterium acnes HL056PA1]
 gi|313838091|gb|EFS75805.1| exonuclease [Propionibacterium acnes HL086PA1]
 gi|314914476|gb|EFS78307.1| exonuclease [Propionibacterium acnes HL005PA4]
 gi|314917800|gb|EFS81631.1| exonuclease [Propionibacterium acnes HL050PA1]
 gi|314919473|gb|EFS83304.1| exonuclease [Propionibacterium acnes HL050PA3]
 gi|314925898|gb|EFS89729.1| exonuclease [Propionibacterium acnes HL036PA3]
 gi|314930232|gb|EFS94063.1| exonuclease [Propionibacterium acnes HL067PA1]
 gi|314957046|gb|EFT01152.1| exonuclease [Propionibacterium acnes HL027PA1]
 gi|314957661|gb|EFT01764.1| exonuclease [Propionibacterium acnes HL002PA1]
 gi|314960727|gb|EFT04828.1| exonuclease [Propionibacterium acnes HL002PA2]
 gi|314963399|gb|EFT07499.1| exonuclease [Propionibacterium acnes HL082PA1]
 gi|314968946|gb|EFT13044.1| exonuclease [Propionibacterium acnes HL037PA1]
 gi|314972968|gb|EFT17064.1| exonuclease [Propionibacterium acnes HL053PA1]
 gi|314975485|gb|EFT19580.1| exonuclease [Propionibacterium acnes HL045PA1]
 gi|314979437|gb|EFT23531.1| exonuclease [Propionibacterium acnes HL072PA2]
 gi|314984227|gb|EFT28319.1| exonuclease [Propionibacterium acnes HL005PA1]
 gi|314986027|gb|EFT30119.1| exonuclease [Propionibacterium acnes HL005PA2]
 gi|314988810|gb|EFT32901.1| exonuclease [Propionibacterium acnes HL005PA3]
 gi|315077249|gb|EFT49311.1| exonuclease [Propionibacterium acnes HL053PA2]
 gi|315079928|gb|EFT51904.1| exonuclease [Propionibacterium acnes HL078PA1]
 gi|315083258|gb|EFT55234.1| exonuclease [Propionibacterium acnes HL027PA2]
 gi|315086971|gb|EFT58947.1| exonuclease [Propionibacterium acnes HL002PA3]
 gi|315089896|gb|EFT61872.1| exonuclease [Propionibacterium acnes HL072PA1]
 gi|315096775|gb|EFT68751.1| exonuclease [Propionibacterium acnes HL038PA1]
 gi|315097845|gb|EFT69821.1| exonuclease [Propionibacterium acnes HL059PA2]
 gi|315100750|gb|EFT72726.1| exonuclease [Propionibacterium acnes HL046PA1]
 gi|315109298|gb|EFT81274.1| exonuclease [Propionibacterium acnes HL030PA2]
 gi|327325340|gb|EGE67145.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL096PA2]
 gi|327325497|gb|EGE67300.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL096PA3]
 gi|327443771|gb|EGE90425.1| exonuclease [Propionibacterium acnes HL043PA1]
 gi|327449167|gb|EGE95821.1| exonuclease [Propionibacterium acnes HL043PA2]
 gi|327449503|gb|EGE96157.1| exonuclease [Propionibacterium acnes HL013PA2]
 gi|327451349|gb|EGE98003.1| exonuclease [Propionibacterium acnes HL087PA3]
 gi|327451673|gb|EGE98327.1| exonuclease [Propionibacterium acnes HL092PA1]
 gi|327452136|gb|EGE98790.1| exonuclease [Propionibacterium acnes HL083PA2]
 gi|328752391|gb|EGF66007.1| exonuclease [Propionibacterium acnes HL087PA1]
 gi|328755047|gb|EGF68663.1| exonuclease [Propionibacterium acnes HL025PA2]
 gi|328755908|gb|EGF69524.1| exonuclease [Propionibacterium acnes HL020PA1]
 gi|328761056|gb|EGF74607.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL099PA1]
 gi|332676124|gb|AEE72940.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes 266]
          Length = 210

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 36/200 (18%)

Query: 3   NHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
             FV  D+ET     G         Q A V+V    + ++        P        E  
Sbjct: 41  PSFVAVDFETANRMGGVSA-----CQVAMVKV-LDGQIVDRLNTLIRPPKGWD--SFEFT 92

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           ++ GI+              +  +  F    +   +  +N  FD    R        D +
Sbjct: 93  YLHGISAADVADAPG-WINIADTVSHFV---DGATVYAHNAAFDSRVWRQ------LDEH 142

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177
             +       +      +                 G  ++KL  +  A    +  N H A
Sbjct: 143 FGTTTLPAPFFCSYRTAQ-------------RLIPGLPNYKLPTVLHACAPNYQLNHHRA 189

Query: 178 KADVYATLALVWLIREKKPK 197
            +D  A   +V  ++ +   
Sbjct: 190 DSDAEACALIVCELQRRAQT 209


>gi|311695397|gb|ADP98270.1| oligoribonuclease [marine bacterium HP15]
          Length = 180

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 19/132 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
           +N  V  D E  G D   +R  + A +  D +   +           + F     +    
Sbjct: 4   SNRLVWIDLEMTGLDPEKERIIEMATIITDSELNIVAEGPVIAVHQPQSFLDSMDEWC-- 61

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                   G +   ++     + E++  ++  +F           +  N+I  D  +   
Sbjct: 62  ----TRTHGESGLTKRVQESDISESQAEQQTIEFLKKHVEKGQSPLCGNSIGQDRRFLVK 117

Query: 109 IFYRNFYDSYRW 120
                    +  
Sbjct: 118 YMPELEGFFHYR 129


>gi|261345223|ref|ZP_05972867.1| oligoribonuclease [Providencia rustigianii DSM 4541]
 gi|282566919|gb|EFB72454.1| oligoribonuclease [Providencia rustigianii DSM 4541]
          Length = 180

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPVRDRIIEIATIVTDSNLNILAE 42


>gi|213965916|ref|ZP_03394107.1| oligoribonuclease [Corynebacterium amycolatum SK46]
 gi|213951494|gb|EEB62885.1| oligoribonuclease [Corynebacterium amycolatum SK46]
          Length = 217

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/127 (11%), Positives = 32/127 (25%), Gaps = 8/127 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G +       + A +  D     +          ++  L   D     +
Sbjct: 15  DRIVWIDCEMTGLEPERHVIVEIAALVTDANLNVLGEGVDIVVHASETELAQMDDFVTKM 74

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNF 114
              +   Q+        A+  + +  +         T  +  N+I  D  +         
Sbjct: 75  HAKSGLDQEIRASKTNVADAEQAVLDYIRQWVPEPRTAPLAGNSIASDRKFIHRYMPELD 134

Query: 115 YDSYRWS 121
              +   
Sbjct: 135 QHLHYRM 141


>gi|171742833|ref|ZP_02918640.1| hypothetical protein BIFDEN_01948 [Bifidobacterium dentium ATCC
           27678]
 gi|283456129|ref|YP_003360693.1| hypothetical protein BDP_1248 [Bifidobacterium dentium Bd1]
 gi|171278447|gb|EDT46108.1| hypothetical protein BIFDEN_01948 [Bifidobacterium dentium ATCC
           27678]
 gi|283102763|gb|ADB09869.1| Conserved hypothetical protein [Bifidobacterium dentium Bd1]
          Length = 443

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 48/202 (23%), Gaps = 9/202 (4%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF---FCKPADDYLPDPEAVFITGIT 64
            D ET G  V  D          D    +    +       K  +          +TGIT
Sbjct: 234 IDLETTGTSVNQDYIIDAGWELFDMAMGRAFEAQRRTYGISKQRERLGISRNITELTGIT 293

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY--SRNIFYRNFYDSYRWSW 122
                   +   E +       +  +  I+  +N  F+  +       Y       R   
Sbjct: 294 TADVSGR-IPFQEDANAQKTIITALDGRIMVAHNANFERSFLIGNCEGYAEALRDGRIRI 352

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL---ALANGIEHVNAHDAKA 179
            +        +  R       D  +     D     ++      A+         H    
Sbjct: 353 VDSMKVAQHSEDARVQGFKLDDYARRNHALDADRDMEVPSHDGGAIRLDQGEKERHLGLE 412

Query: 180 DVYATLALVWLIREKKPKLFEY 201
           D +  +  +          +E+
Sbjct: 413 DAHIMMRAMRNQLNALHSRYEH 434


>gi|149195011|ref|ZP_01872104.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus
           TB-2]
 gi|149134932|gb|EDM23415.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus
           TB-2]
          Length = 274

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 23/185 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           ++D ET            +A V  D    + +                 EA  +  I  +
Sbjct: 106 VFDTETTDI---YGYIISYAFVIQDMDSLETKEIYEL---LNPKAKISEEAYEVHKIKQE 159

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                   E E    I   F+  +  +I  +N+ FD    +    R  +          +
Sbjct: 160 DLEDKPTFE-EKKEYILDLFNSVD--MIVGHNVFFDFGVLKRELERAKHFPNIIEVPIFD 216

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
           + +   D++       P                 + +A   G +    H+A  DV  TL 
Sbjct: 217 TMFYSWDIVVLDKKKQPRL--------------EEAVAFFLGPQKAQYHNALEDVKMTLK 262

Query: 187 LVWLI 191
           +   +
Sbjct: 263 VFNRL 267


>gi|120597485|ref|YP_962059.1| oligoribonuclease [Shewanella sp. W3-18-1]
 gi|146294374|ref|YP_001184798.1| oligoribonuclease [Shewanella putrefaciens CN-32]
 gi|166216588|sp|A4YAL6|ORN_SHEPC RecName: Full=Oligoribonuclease
 gi|166216590|sp|A1RFR0|ORN_SHESW RecName: Full=Oligoribonuclease
 gi|120557578|gb|ABM23505.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
           W3-18-1]
 gi|145566064|gb|ABP76999.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           putrefaciens CN-32]
 gi|319427729|gb|ADV55803.1| Exonuclease RNase T and DNA polymerase III [Shewanella putrefaciens
           200]
          Length = 181

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G +  +DR  + A +  D++   I    V      D+ L   D      
Sbjct: 6   NNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQPDEVLAAMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       EA+   +   F           +  N++  D  +          
Sbjct: 66  HGESGLIDRVRASQDNEAQAVAKTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELED 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|146329636|ref|YP_001209796.1| oligoribonuclease [Dichelobacter nodosus VCS1703A]
 gi|166216257|sp|A5EY84|ORN_DICNV RecName: Full=Oligoribonuclease
 gi|146233106|gb|ABQ14084.1| oligoribonuclease [Dichelobacter nodosus VCS1703A]
          Length = 180

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VF 59
            N+ V  D E  G D   D   + A +  D Q   +    V      +  L   +A    
Sbjct: 4   KNNLVWIDLEMTGLDPQHDEIIEIATIVTDAQLNILAEGPVIAVYQPEPILAQMDAWNQK 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   ++  +      E   +   F           I  N+I  D  +   +  R  
Sbjct: 64  HHGASGLIERVRQSSFNTLEAEAQTLSFLEQYSEKGRSPICGNSICQDRRFLSRLMPRLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 AFFHYR 129


>gi|146310438|ref|YP_001175512.1| exodeoxyribonuclease X [Enterobacter sp. 638]
 gi|145317314|gb|ABP59461.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
          Length = 223

 Score = 57.5 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 52/224 (23%), Gaps = 44/224 (19%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G +   +   + A V +                         EA+ I  IT  
Sbjct: 4   VIDTETTGLEGGPETVVELASVDI-VDGVICNPMSDL---VKPGVAIGFEAMAIHHITED 59

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                 +  +E   R               +N +FD                        
Sbjct: 60  MVEGAPL-LSEVIGR------YLGADAYVAHNAKFD------------------KSKLPQ 94

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-----NAHDAKADV 181
                +   +   +  P+            S   Q L  + G++        AH A  D 
Sbjct: 95  IDAPWICTAKLARSLLPEH----------KSHSNQYLRYSLGLKPEVPEGLYAHRALYDC 144

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
           Y T  L+  +          +    N   L   +       +  
Sbjct: 145 YVTAELLLYMGRLAKWTMGEMRAISNNPSLLNALRFGKHKGVSF 188


>gi|261253571|ref|ZP_05946144.1| ribonuclease T [Vibrio orientalis CIP 102891]
 gi|260936962|gb|EEX92951.1| ribonuclease T [Vibrio orientalis CIP 102891]
          Length = 218

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 65/216 (30%), Gaps = 29/216 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D   +    ST  F  +P +    + EA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLKMDENGDLAPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V EAE  + I++        +  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCSRAIMVAHNATFDHSFVMEASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                           ++  AH
Sbjct: 140 KRVPFHPFATFDTAALSGLAYGQTVLAKACK-----------------TAGMDFDNKEAH 182

Query: 176 DAKADVYATLALVWLIRE--KKPKLFEYLYDYRNKN 209
            A  D   T  L   I    K    +  +    +K 
Sbjct: 183 SALYDTQKTAELFCGIVNKWKALGGWPVVEPDTDKK 218


>gi|91213714|ref|YP_543700.1| oligoribonuclease [Escherichia coli UTI89]
 gi|237703830|ref|ZP_04534311.1| oligoribonuclease [Escherichia sp. 3_2_53FAA]
 gi|254037177|ref|ZP_04871254.1| oligoribonuclease [Escherichia sp. 1_1_43]
 gi|332280947|ref|ZP_08393360.1| oligoribonuclease [Shigella sp. D9]
 gi|26111489|gb|AAN83671.1|AE016771_182 Oligoribonuclease [Escherichia coli CFT073]
 gi|91075288|gb|ABE10169.1| oligoribonuclease [Escherichia coli UTI89]
 gi|226840283|gb|EEH72285.1| oligoribonuclease [Escherichia sp. 1_1_43]
 gi|226901742|gb|EEH88001.1| oligoribonuclease [Escherichia sp. 3_2_53FAA]
 gi|332103299|gb|EGJ06645.1| oligoribonuclease [Shigella sp. D9]
          Length = 220

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 45 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 81


>gi|311281283|ref|YP_003943514.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
          SCF1]
 gi|308750478|gb|ADO50230.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
          SCF1]
          Length = 181

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|260772767|ref|ZP_05881683.1| hypothetical protein VIB_001223 [Vibrio metschnikovii CIP 69.14]
 gi|260611906|gb|EEX37109.1| hypothetical protein VIB_001223 [Vibrio metschnikovii CIP 69.14]
          Length = 176

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 23/152 (15%)

Query: 1   MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPA 48
           M  + V+ +D E          T G         +     +D    + ++  + ++ +P 
Sbjct: 1   MNYNRVVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLTAGKIVKRAQ-YYVQPE 53

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
            D +     V +TGITP+K  + G   A+  R + + F         +     DD     
Sbjct: 54  QDKI-SEFCVELTGITPRKVAKQGRPLADVLRSMVKNFGGSKKIYACW---GRDDLILAK 109

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
              +           N  + + L   ++    
Sbjct: 110 ECAQKGLPMPIHECINLATLYRLQHRLKDKRI 141


>gi|218551434|ref|YP_002385226.1| oligoribonuclease [Escherichia fergusonii ATCC 35469]
 gi|218358976|emb|CAQ91636.1| oligoribonuclease [Escherichia fergusonii ATCC 35469]
 gi|324112239|gb|EGC06217.1| exonuclease [Escherichia fergusonii B253]
          Length = 181

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|197334850|ref|YP_002157125.1| oligoribonuclease [Vibrio fischeri MJ11]
 gi|197316340|gb|ACH65787.1| oligoribonuclease [Vibrio fischeri MJ11]
          Length = 181

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 30/125 (24%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
            + +  D E  G D    +  + A +  D Q   +     +   +P ++     +    T
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIASIVTDAQLNILAEGPVIAIHQPEEELAKMDDWCTNT 65

Query: 62  GIT---PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
                   +       E         F           I  N+I  D  +          
Sbjct: 66  HTNSGLVARVQESKYNEEAAIAETIAFLEQWVPKGVSPICGNSIGQDRRFLYKHMPTLEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|302877146|ref|YP_003845779.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307687841|ref|ZP_07630287.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|302580003|gb|ADL54015.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 205

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 16/213 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           + + +D ET G      +  Q + ++   D + +K+E    FF    +D  P  EA  I 
Sbjct: 2   NMIFFDTETTGLKP--GQICQLSYIKVTTDTKPQKVEGKNFFFS--VEDIEPSAEA--IH 55

Query: 62  GITPQKALR--DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           G + +  +   DG   ++        F   +  +IGYN   FD  +    FYR   +   
Sbjct: 56  GFSVEDLIELSDGCEFSDLYEEFINDFVDCD-LVIGYNV-NFDIKFLVAEFYRLGINYIP 113

Query: 120 WSWDNGNSRWDLLDVMRAIY--AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                    +  +  +R       +P   +     +   +F  +      G      HDA
Sbjct: 114 KMDFCAMQYYKEICAIRGKNGDIKNPKLAEVVEFLNIDETFMYEKTRELFGGS-GRFHDA 172

Query: 178 KADVYAT-LALVWLIREKKPKLFEYLYDYRNKN 209
           + D  AT L +   I++K    + +    ++K 
Sbjct: 173 RFDTTATYLIITEGIKKKFIPPYYFTKYIKDKK 205


>gi|242237928|ref|YP_002986109.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii
          Ech703]
 gi|242129985|gb|ACS84287.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii
          Ech703]
          Length = 180

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 5  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNVLAE 41


>gi|145593678|ref|YP_001157975.1| oligoribonuclease [Salinispora tropica CNB-440]
 gi|145303015|gb|ABP53597.1| Exonuclease, RNase T and DNA polymerase III [Salinispora tropica
           CNB-440]
          Length = 198

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 14/153 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD---DYLPDPEAVFIT 61
            V  D E  G D+  D+  + A +  D     +           +   D +P+  A    
Sbjct: 7   LVWIDCEMTGLDLGGDKLIEVAALVTDPDLNVLGEGVDVVIHADEAALDKMPEIVATM-H 65

Query: 62  ---GITPQKALRD--GVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
              G+T ++  R   G+ EAE      I      P T  +  N+I  D  +      R  
Sbjct: 66  AKSGLT-EEVRRSTIGLAEAEEMVLDYITSHVKDPRTAPLCGNSIATDRGFIARDMPR-- 122

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
            D++        S    L        +     +
Sbjct: 123 LDNHLHYRMIDVSSIKELCRRWYPRVYFSQPRK 155


>gi|104780415|ref|YP_606913.1| ribonuclease T [Pseudomonas entomophila L48]
 gi|166200016|sp|Q1IE06|RNT_PSEE4 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|95109402|emb|CAK14102.1| ribonuclease T [Pseudomonas entomophila L48]
          Length = 224

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 63/215 (29%), Gaps = 31/215 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYL 52
           M   F     V+ D ET G + A D   + A V +  D +         F+  +P +   
Sbjct: 22  MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFYRVEPFEGAN 81

Query: 53  PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +  A+  TGI        A+ +     +  R + +          I+  +N  FD  + 
Sbjct: 82  IEAAALEFTGIKLDHPLRMAVSEESALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 141

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                RN      +   +      L  +       +          DG            
Sbjct: 142 NAAVARNDIKRNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGR----------- 190

Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201
                  AH A+ D   T  L   I  +  ++  +
Sbjct: 191 ------EAHSARYDTEKTAELFCGIVNRWKEMGGW 219


>gi|301023446|ref|ZP_07187227.1| exonuclease [Escherichia coli MS 69-1]
 gi|300396998|gb|EFJ80536.1| exonuclease [Escherichia coli MS 69-1]
          Length = 199

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60


>gi|256375198|ref|YP_003098858.1| oligoribonuclease [Actinosynnema mirum DSM 43827]
 gi|255919501|gb|ACU35012.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 208

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 12/150 (8%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            +  V  D E  G D+  D   + A +  D +   +           D+ L       V 
Sbjct: 1   MDRLVWIDCEMTGLDLGSDALIEIAALVTDAELNVLGEGVDVVIHADDEALAAMPEVVVK 60

Query: 60  IT---GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           +    G+T ++  R     AE        I ++     T  +  N+I  D  +       
Sbjct: 61  MHAKSGLT-EEVRRSTTTLAEAEALVLAYIREWVPDARTAPLAGNSIATDRGFI--ARDM 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
              D++        S    L        + 
Sbjct: 118 PELDAHLHYRMVDVSSIKELCRRWYPRIYF 147


>gi|261342826|ref|ZP_05970684.1| oligoribonuclease [Enterobacter cancerogenus ATCC 35316]
 gi|288314868|gb|EFC53806.1| oligoribonuclease [Enterobacter cancerogenus ATCC 35316]
          Length = 181

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|288906155|ref|YP_003431377.1| DNA polymerase III epsilon subunit [Streptococcus gallolyticus
           UCN34]
 gi|288732881|emb|CBI14460.1| putative DNA polymerase III epsilon subunit [Streptococcus
           gallolyticus UCN34]
          Length = 195

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ +D E F          Q + V+  ++  +++S + +      D         +TGIT
Sbjct: 7   YIAFDLE-FNTVAEKSHIIQVSAVKF-KEGHEVDSFDTY---VYTDVPLQSFINGLTGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +K         E       F     T ++GYN ++ D                      
Sbjct: 62  SEKIANAPK-LDEVLVDFKTFVGE--TALVGYNALKSDLPLLAENELD------------ 106

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L  +  +  +     +  +  +G  + KL  +A   GI   + H++  D   T
Sbjct: 107 -------LTELYKVDLYDEAFERRSTDLNGIANLKLTSVAEFLGIS-GHGHNSLEDARMT 158

Query: 185 LALVWLIREKKPK 197
             +     E    
Sbjct: 159 ALVYEKFMEFDEN 171


>gi|251788035|ref|YP_003002756.1| Exonuclease RNase T and DNA polymerase III [Dickeya zeae Ech1591]
 gi|247536656|gb|ACT05277.1| Exonuclease RNase T and DNA polymerase III [Dickeya zeae Ech1591]
          Length = 180

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 5  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 41


>gi|187927908|ref|YP_001898395.1| oligoribonuclease [Ralstonia pickettii 12J]
 gi|187724798|gb|ACD25963.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
          12J]
          Length = 219

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ V  D E  G     DR  + A V  D +   +  
Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAVVVTDSELNILAE 64


>gi|188533646|ref|YP_001907443.1| exodeoxyribonuclease X [Erwinia tasmaniensis Et1/99]
 gi|188028688|emb|CAO96550.1| DNA exonuclease X [Erwinia tasmaniensis Et1/99]
          Length = 221

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 49/182 (26%), Gaps = 38/182 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G         + A V V    +              D     +A+ +  IT  
Sbjct: 4   VIDTETCGL---QGGIVEVASVDV-INGQIANPMSDLIS---PDRPISRQAMDVHKITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +   R H      +   + +N              R         W    
Sbjct: 57  MVRGKPTIE-QAIGRYH-----GSPYYVAHNASFD----------RRMLPEMNGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R +         WP    G  + +       +    ++AH A  D Y T A
Sbjct: 97  --ICTMTLARRL---------WPGLKYGNEALRQALRLDVSPPPELHAHRALYDCYVTAA 145

Query: 187 LV 188
           L+
Sbjct: 146 LL 147


>gi|170696330|ref|ZP_02887460.1| Exonuclease RNase T and DNA polymerase III [Burkholderia graminis
           C4D1M]
 gi|170138736|gb|EDT06934.1| Exonuclease RNase T and DNA polymerase III [Burkholderia graminis
           C4D1M]
          Length = 203

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 13/173 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + V  D E  G D   DR  + A V  +   +++    V     +D+ L   D       
Sbjct: 19  NLVWLDMEMTGLDPDSDRIIEIAVVVTNSTLDRMAEGPVLAIHQSDETLAKMDQWNQNTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111
           G +    +     V E E + +I  F +    P    +  N+I  D  +          +
Sbjct: 79  GRSGLIDRVKASTVSEIEATEQIRAFLAQYVPPGKSPMCGNSICQDRRFMARWMPELETF 138

Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
            ++ +    +      RW   +       A            D    ++   L
Sbjct: 139 FHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYREHFL 191


>gi|325499700|gb|EGC97559.1| hypothetical protein ECD227_3797 [Escherichia fergusonii ECD227]
          Length = 185

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 10 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 46


>gi|320539682|ref|ZP_08039346.1| putative oligoribonuclease [Serratia symbiotica str. Tucson]
 gi|320030294|gb|EFW12309.1| putative oligoribonuclease [Serratia symbiotica str. Tucson]
          Length = 181

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          + +  D E  G D   DR  + A +  D     +  
Sbjct: 7  NLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|238892647|ref|YP_002917381.1| oligoribonuclease [Klebsiella pneumoniae NTUH-K2044]
 gi|238544963|dbj|BAH61314.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
          Length = 199

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60


>gi|304413849|ref|ZP_07395266.1| ribonuclease T [Candidatus Regiella insecticola LSR1]
 gi|304283569|gb|EFL91964.1| ribonuclease T [Candidatus Regiella insecticola LSR1]
          Length = 210

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61
           V+ D ET G D   +   + A V +           E+   F   P +  + + +++   
Sbjct: 20  VVIDVETSGFDAQTNALLEIAAVTLQMNDGGWLHPAETLH-FHVAPFEGAILEQKSLSFN 78

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           GI     LR  + E +  + I +              ++  +N  FD  +      R   
Sbjct: 79  GINLDNPLRGAISEHKALQTIFETVKKRMKGEGCTRAVVVAHNATFDHRFVMAAAERTGL 138

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--N 173
             +     N    +   D            +             L    L  GI+     
Sbjct: 139 IKH-----NPFHSFVTFDTAALSALVLGQTV-------------LAKACLEAGIDFESSQ 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   +  +
Sbjct: 181 AHSALYDTKQTAKLFCELVNR 201


>gi|260779364|ref|ZP_05888256.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605528|gb|EEX31823.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450]
          Length = 219

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D   E    ST  F  +P +    + EA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLKMDENGELQPASTIHFHVEPFEGANLEKEALDFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E+E  + I++        +  +  I+  +N  FD  +      R+  
Sbjct: 80  IHDPFSPLRGAVPESEALKEIYKLVRKEQKAADCSRAIMVAHNATFDHNFVMAASERSKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                           ++  AH
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------TAGMDFDNKEAH 182

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  K
Sbjct: 183 SALYDTLKTAELFCGIVNK 201


>gi|25028926|ref|NP_738980.1| oligoribonuclease [Corynebacterium efficiens YS-314]
 gi|259507990|ref|ZP_05750890.1| oligoribonuclease [Corynebacterium efficiens YS-314]
 gi|29611789|sp|Q8FMX9|ORN_COREF RecName: Full=Oligoribonuclease
 gi|23494213|dbj|BAC19180.1| putative oligoribonuclease [Corynebacterium efficiens YS-314]
 gi|259164485|gb|EEW49039.1| oligoribonuclease [Corynebacterium efficiens YS-314]
          Length = 221

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 10/119 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D+      + A +  D     +           D+ L   D     +
Sbjct: 19  DRLVWVDLEMTGLDLERHVIVEVAALVTDANLNILGEGVDLVVHATDEELARMDDFVTRM 78

Query: 61  T---GITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
               G+TP       V     E      I +     +   +  N+I  D  + R    R
Sbjct: 79  HDSSGLTP-LIRASTVSLKDAEDAVLALIEEHCDPAHPAPLAGNSIATDRAFIREQMPR 136


>gi|15616807|ref|NP_240019.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219681560|ref|YP_002467946.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219682118|ref|YP_002468502.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|257471245|ref|ZP_05635244.1| ribonuclease T [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11387052|sp|P57285|RNT_BUCAI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|25356015|pir||A84952 ribonuclease T [imported] - Buchnera sp. (strain APS)
 gi|10038870|dbj|BAB12905.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219621851|gb|ACL30007.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219624403|gb|ACL30558.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311085930|gb|ADP66012.1| ribonuclease T [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086501|gb|ADP66582.1| ribonuclease T [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087083|gb|ADP67163.1| ribonuclease T [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087635|gb|ADP67714.1| ribonuclease T [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 221

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 65/219 (29%), Gaps = 26/219 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D       E T  F  +P    + + +A+    
Sbjct: 20  VVIDIETAGFNANTDAVLEIAIITLKMDELGWLHKEDTLHFHIEPFKGSIINSDAIAFNK 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTC------IIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  + E    + I +              I+  +N  FD  +      R    
Sbjct: 80  IDPFNPLRGAISEKIAIQSILKKVRNGIKIQGCSRGIVVAHNANFDHNFLMAAIQRVKIK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +  +          L  ++      S                     A+    ++  AH 
Sbjct: 140 NNPFHPFATFDTAALSGLVVGQTVLSKACK-----------------AIGLSFDNHQAHS 182

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215
           A  D   T  L   +  +  +L  +  D +  N      
Sbjct: 183 ALYDTLQTANLFCELVNRWKRLGGWPVDIKKNNSTSNKY 221


>gi|161984789|ref|YP_410541.2| oligoribonuclease [Shigella boydii Sb227]
 gi|320183731|gb|EFW58568.1| 3'-to-5' oligoribonuclease (orn) [Shigella flexneri CDC 796-83]
 gi|320187043|gb|EFW61754.1| 3'-to-5' oligoribonuclease (orn) [Shigella flexneri CDC 796-83]
 gi|332087020|gb|EGI92154.1| exonuclease family protein [Shigella boydii 3594-74]
          Length = 181

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42


>gi|81248005|gb|ABB68713.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 204

 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 29 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65


>gi|302873810|ref|YP_003842443.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307689948|ref|ZP_07632394.1| DNA polymerase III subunit epsilon [Clostridium cellulovorans 743B]
 gi|302576667|gb|ADL50679.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 306

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   + P     V V +  E +E           +    P  + I GI
Sbjct: 2   NFIAIDFET--ANEKRNSPCSIGIVVV-KNGEVVERIHHLIK--PKEMRFMPINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P     +     E   +I   F+     ++  +N  FD    R        +   + + 
Sbjct: 57  RPAMVENEPEFH-EVWAKIKHHFNES---LVIAHNASFDISVLRKSAELYDIELPSFKY- 111

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +  MR    F                 KL  +    G E    HDA  D  A
Sbjct: 112 --------ICTMRLAKNFYRGIEN----------AKLNTVNDFLGYEF-KHHDALYDALA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|238750063|ref|ZP_04611566.1| Oligoribonuclease [Yersinia rohdei ATCC 43380]
 gi|238711607|gb|EEQ03822.1| Oligoribonuclease [Yersinia rohdei ATCC 43380]
          Length = 181

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 5  QNNLIWIDLEMTGLDPQRDRIIEIATLVTDANLNILAE 42


>gi|60594178|pdb|1Y97|A Chain A, The Human Trex2 3' Exonuclease Structure Suggests A
           Mechanism For Efficient Non-Processive Dna Catalysis
 gi|60594179|pdb|1Y97|B Chain B, The Human Trex2 3' Exonuclease Structure Suggests A
           Mechanism For Efficient Non-Processive Dna Catalysis
          Length = 238

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 34/209 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFA--GVR--------VDRQW-----EKIESTEVFFCKP 47
             FV  D E  G        A+ +   V          D          ++   +  C  
Sbjct: 10  ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCXC-- 67

Query: 48  ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102
             +     +A  ITG++ +   +  + G  +    R +  F S      C++ +N   +D
Sbjct: 68  -PERPFTAKASEITGLSSEGLARCRKAG-FDGAVVRTLQAFLSRQAGPICLVAHNGFDYD 125

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
                    R      R +        D L  +R +      G +      G   + L  
Sbjct: 126 FPLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGS 176

Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190
           L       E   AH A+ DV+  L +   
Sbjct: 177 LFHRYFRAEPSAAHSAEGDVHTLLLIFLH 205


>gi|260599488|ref|YP_003212059.1| oligoribonuclease [Cronobacter turicensis z3032]
 gi|260218665|emb|CBA34001.1| Oligoribonuclease [Cronobacter turicensis z3032]
          Length = 181

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPRQDRIIEIATLVTDANLNILAE 42


>gi|271502182|ref|YP_003335208.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii
          Ech586]
 gi|270345737|gb|ACZ78502.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii
          Ech586]
          Length = 180

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 5  NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNVLAE 41


>gi|146306423|ref|YP_001186888.1| ribonuclease T [Pseudomonas mendocina ymp]
 gi|145574624|gb|ABP84156.1| RNAse T [Pseudomonas mendocina ymp]
          Length = 224

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 65/207 (31%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A   + +D       + T  F  +P +    +  A+  TG
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTIAMDESGFLYPDHTHFFRIEPFEGANIEAAALEFTG 91

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     E  + + +          I+  +N  FD  +      R    
Sbjct: 92  IKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAAVARCGIK 151

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GIE     A
Sbjct: 152 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIEFDGKEA 192

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 193 HSARYDTEKTAELFCGIVNRWKEMGGW 219


>gi|317052331|ref|YP_004113447.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
 gi|316947415|gb|ADU66891.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum
           indicum S5]
          Length = 166

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 28/193 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V    + +        +P            + 
Sbjct: 1   MQNFTAIDFET--ANEQRTSACAIGVVVV-ENRQIV-RQYARLIRPEPMRFAS-FNTAVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T        V   E    I       +  ++  +N  FD    ++    +   +    
Sbjct: 56  GLTAADVAGAPV-FGELWPEIAADI--VSAPLLVAHNTSFDMSVLQHCLRSSGIAANIP- 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D +   R      P  +            KL  L    GI   N HDA +D 
Sbjct: 112 --------DAVCSCRMAKKLLPQLVN----------HKLNTLCKHFGIPL-NHHDALSDA 152

Query: 182 YATLALVWLIREK 194
            A   ++  + ++
Sbjct: 153 QAAARIILELYQE 165


>gi|303317210|ref|XP_003068607.1| exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240108288|gb|EER26462.1| exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320038531|gb|EFW20466.1| RNA exonuclease Rex2 [Coccidioides posadasii str. Silveira]
          Length = 190

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 11/126 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEA---VFI 60
            V  D E  G D   D   Q +    D     +   E F        Y+    +   V  
Sbjct: 10  LVWIDCEMTGLDPETDHILQISCFLTDADLNLL-EPEGFHVTVHQPQYILSSMSSWCVST 68

Query: 61  TGIT--PQKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            G +      L      +E +      I ++     T ++  N++  D  +     Y+  
Sbjct: 69  HGHSGLTAAVLDSTTTPSEAASALLAYIQKYIPESRTALLAGNSVHADRAFLARKPYKTV 128

Query: 115 YDSYRW 120
            D   +
Sbjct: 129 VDWLHY 134


>gi|15602853|ref|NP_245925.1| ribonuclease T [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431828|sp|P57896|RNT_PASMU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|12721315|gb|AAK03072.1| Rnt [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 220

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 54/201 (26%), Gaps = 26/201 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  +++     + + T  F  +P      +PE++   G
Sbjct: 24  VIIDVETAGFNAKTDALLELAAITVKMNEDGLLVPDQTCHFHIEPFAGANINPESLQFNG 83

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E      + +        +     II  +N  FD  +      R    
Sbjct: 84  IDIHNPLRGAVSETVAITELFKMVRKAQKAADCQRSIIVAHNAAFDQSFLMAAAERTGVK 143

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L   M                            A     +   AH 
Sbjct: 144 RNPFHPFGMFDTATLSGFMFGQTVLVKACQ-----------------AAQIAFDGKQAHS 186

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D   T  L   +      
Sbjct: 187 ALYDTERTAELFCYMVNHLKH 207


>gi|331006083|ref|ZP_08329419.1| Ribonuclease T [gamma proteobacterium IMCC1989]
 gi|330420120|gb|EGG94450.1| Ribonuclease T [gamma proteobacterium IMCC1989]
          Length = 201

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 63/218 (28%), Gaps = 31/218 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYL 52
           M   F     V+ D ET G +   D   + +   + +D +    I+    +   P +   
Sbjct: 1   MAERFRGYLPVVIDVETGGFNSRTDALLEVSAATLAMDDEGILSIDQLYEYHVTPFEGAN 60

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS 106
            +  A+  TGI  +   R+ + E +    + +        +     I+  +N  FD  + 
Sbjct: 61  IEQSALDFTGIDLENPDRNAIPEEDMLNELFRVIRKAVKRNDCTRAIMVAHNAHFDLGFV 120

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R       +   +      L  +       +                        
Sbjct: 121 NEAAERCGMKRNPFHPFSCMDTATLSGLAFGHTVLAQACQL-----------------AK 163

Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYD 204
            G  +  AH A  D   T  L  +I  +  +L  +   
Sbjct: 164 IGFSNKEAHAASYDTRKTAELFCVIVNRWQELGGWPLR 201


>gi|302560513|ref|ZP_07312855.1| oligoribonuclease [Streptomyces griseoflavus Tu4000]
 gi|302478131|gb|EFL41224.1| oligoribonuclease [Streptomyces griseoflavus Tu4000]
          Length = 200

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 58/206 (28%), Gaps = 45/206 (21%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD---DYLPDP-- 55
           M +  V  D E  G  ++ D   + A +  D +   +        +P D   + +P    
Sbjct: 1   MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDRALETMPQVVR 60

Query: 56  ----EAVFIT----GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
                +  +T    G T ++A      E      I +    P    +  N++  D  +  
Sbjct: 61  EMHTASGLLTELEGGTTLEEA------EQRVLDYIREHVKEPGKAPLCGNSVGTDRGF-- 112

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
                   D             D+  +      + P                    A  N
Sbjct: 113 -----LLRDMPTLEDYLHYRIVDVSSIKELARRWYPR-------------------AYFN 148

Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
             E    H A AD+  ++  +   RE
Sbjct: 149 SPEKNGNHRALADIRESITELRYYRE 174


>gi|116333325|ref|YP_794852.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus brevis ATCC 367]
 gi|116098672|gb|ABJ63821.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus brevis ATCC 367]
          Length = 178

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 30/201 (14%)

Query: 4   HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +FV  D+ET  G+  +         + + R  + ++           D       V I G
Sbjct: 2   NFVAMDFETASGKRYSACSL----ALTIVRNDQVVDEFYSL---IKPDTDFFWRNVQIHG 54

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  +          E  + +  FF      ++  +N  FD+   R+              
Sbjct: 55  IHERDVANAP-TFPEVWQHVAPFFQRD--RLVIAHNAPFDNGVLRSSLEHYNLPP----- 106

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               +R+  LD ++    F P+            + KL  +     I+  + H+A  D  
Sbjct: 107 ----ARYLTLDTVKTSRKFFPE----------FPNHKLDTVCDELDIDLHHHHNALDDSL 152

Query: 183 ATLALVWLIREKKPKLFEYLY 203
           A   ++    +         +
Sbjct: 153 ACANILLYEAQHFGTQPLKSF 173


>gi|50760099|ref|XP_417900.1| PREDICTED: similar to CGI-114 protein [Gallus gallus]
          Length = 233

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 33/122 (27%), Gaps = 7/122 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITGI 63
           V  D E  G DV  D+  + A +  D     +        K  D+ L           G 
Sbjct: 40  VWVDLEMTGLDVEKDQILEMACLITDSDLNVLAEGPNLIIKQPDELLDSMSEWCKEHHGK 99

Query: 64  T--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           +   +      +   +       F      P  C +  N++  D  +      +     +
Sbjct: 100 SGLTKAVKESKISLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMRHLH 159

Query: 119 RW 120
             
Sbjct: 160 YR 161


>gi|227543169|ref|ZP_03973218.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227180978|gb|EEI61950.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 449

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFITGI 63
           FV  D ET   +       +    +V      +E    + C P         E + I GI
Sbjct: 105 FVAIDVET--ANDDWGSIIEIGVTKVLNGL--VEEQATWRCTPPPGMEDFLDENIAIHGI 160

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDD 103
            P+    +    A+    + +F        +  +N +FD 
Sbjct: 161 RPEDIEGEP-SFAQRYELVKEFT---GELPMVSHNAQFDF 196


>gi|227488565|ref|ZP_03918881.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091459|gb|EEI26771.1| DNA polymerase III epsilon subunit [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 449

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFITGI 63
           FV  D ET   +       +    +V      +E    + C P         E + I GI
Sbjct: 105 FVAIDVET--ANDDWGSIIEIGVTKVLNGL--VEEQATWRCTPPPGMEDFLDENIAIHGI 160

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDD 103
            P+    +    A+    + +F        +  +N +FD 
Sbjct: 161 RPEDIEGEP-SFAQRYELVKEFT---GELPMVSHNAQFDF 196


>gi|83647725|ref|YP_436160.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83635768|gb|ABC31735.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 230

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 24/213 (11%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D ET G ++  D       V ++         + F      D   + + + I G++ Q  
Sbjct: 40  DVETTGLNIKKDVVIAIGAVEIN-DLSICLE-QSFELLIDADTHLESDNILIHGLSQQTL 97

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
            +    +      IH F S  +   +   +  FD                  +    +SR
Sbjct: 98  SQGAHPK----EAIHSFLSYAHGAALLAFHAPFDKAMLEKE---------ARTHLGVSSR 144

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
               DV   + A  P+               L D +   G+ +   H A  D  A   L 
Sbjct: 145 LPFYDVAEWLKALCPEAPSH--------LRSLDDWSHYFGLYNDQRHHAACDAMAAAELA 196

Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            +  +K   L    +    ++++   + ++ M 
Sbjct: 197 LICLQKARSLGVTTWK-GLQDKIAARMKLEKMR 228


>gi|113968935|ref|YP_732728.1| oligoribonuclease [Shewanella sp. MR-4]
 gi|114048927|ref|YP_739477.1| oligoribonuclease [Shewanella sp. MR-7]
 gi|123130769|sp|Q0HMP6|ORN_SHESM RecName: Full=Oligoribonuclease
 gi|123131054|sp|Q0HR35|ORN_SHESR RecName: Full=Oligoribonuclease
 gi|113883619|gb|ABI37671.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4]
 gi|113890369|gb|ABI44420.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7]
          Length = 181

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G +  +DR  + A +  D++   I    V     +D+ L   D      
Sbjct: 6   NNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +     V EA+   +   F           +  N++  D  +          
Sbjct: 66  HGESGLIDRVRASQVNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELED 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|294626315|ref|ZP_06704917.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294665592|ref|ZP_06730872.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292599316|gb|EFF43451.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292604641|gb|EFF48012.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 213

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 61/212 (28%), Gaps = 41/212 (19%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV----DRQWEKIESTEVFFCKPADDY 51
           M+  F     V+ D ET G D       + A V +    D ++   E+       PA   
Sbjct: 18  MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMGADGRFFPGETASAHLV-PAPGL 76

Query: 52  LPDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRF 101
             DP+++ ITGI     L      A+            +            I+  +N  F
Sbjct: 77  EIDPKSLEITGI----VLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHF 132

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D  +      R  +    +      S +D + +    Y              G T     
Sbjct: 133 DLNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARA 175

Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIRE 193
             A        +AH A  D   T  L   I  
Sbjct: 176 AQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207


>gi|21242321|ref|NP_641903.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306]
 gi|24638164|sp|Q8PM62|RNT_XANAC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|21107753|gb|AAM36439.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306]
          Length = 213

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 61/212 (28%), Gaps = 41/212 (19%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV----DRQWEKIESTEVFFCKPADDY 51
           M+  F     V+ D ET G D       + A V +    D ++   E+       PA   
Sbjct: 18  MSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPIEMGADGRFFPGETASAHLV-PAPGL 76

Query: 52  LPDPEAVFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNT--CIIGYNNIRF 101
             DP+++ ITGI     L      A+            +            I+  +N  F
Sbjct: 77  EIDPKSLEITGI----VLDHPFRFAKQEKEALDHVFAPVRAAVKKYGCQRAILVGHNAHF 132

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D  +      R  +    +      S +D + +    Y              G T     
Sbjct: 133 DLNFLNAAVARVGHKRNPFH---PFSVFDTVTLAGVAY--------------GQTVLARA 175

Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIRE 193
             A        +AH A  D   T  L   I  
Sbjct: 176 AQAAGLDWNAADAHSAVYDTEQTARLFCKIAN 207


>gi|322516220|ref|ZP_08069152.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|322125284|gb|EFX96649.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 196

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 28/195 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ +D E F     +    Q + +++++  E+++  + F      D         +TG
Sbjct: 5   ETYIAFDLE-FNTVDGVSHIIQVSAIKLNQH-EEVDQFDSFVYS---DVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  K  +   +E+        F    +T +IGYN ++ D          +  + Y    
Sbjct: 60  ITAYKIAKAPKLES-VLVDFKSFV--GDTPLIGYNALKSDLPI-LAENGLDLEEQYA--- 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  D+ D      A   +GI          + KL  +A   GI+  + H++  D  
Sbjct: 113 ------LDVFDEAFDRRASDLNGI---------VNLKLTSVADFFGIK-GHGHNSLEDAR 156

Query: 183 ATLALVWLIREKKPK 197
            T  +     E    
Sbjct: 157 MTAQIYEKFLELDEN 171


>gi|269965971|ref|ZP_06180063.1| ribonuclease T [Vibrio alginolyticus 40B]
 gi|269829367|gb|EEZ83609.1| ribonuclease T [Vibrio alginolyticus 40B]
          Length = 214

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 61/201 (30%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D        ST  F  +P +    + EA+   G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLKMDEHGVLHPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E E  + I++        +  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLGFVNAANERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAYGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 181 AHSALYDTQKTAELFCGIVNK 201


>gi|260598318|ref|YP_003210889.1| exodeoxyribonuclease X [Cronobacter turicensis z3032]
 gi|260217495|emb|CBA31655.1| Exodeoxyribonuclease 10 [Cronobacter turicensis z3032]
          Length = 220

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 71/265 (26%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V +      +            D     +A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGVVEVASVDI-IDGAIVNPMSDL---VRPDRPISHQAMAIHKITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +   R H       +     +N  FD         R         W    
Sbjct: 57  MVADKPYIE-DVIPRYH------GSPWYVAHNASFD---------RKVLPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R ++          S      S KLQ    A G+ H   H A  D Y T A
Sbjct: 97  --ICTVKLARRLWP-----GIRYSNMGLYKSLKLQVETPA-GLHH---HRALFDCYITAA 145

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV-AW 245
           L+  I +      E + +   + QL   +                  +     +A +   
Sbjct: 146 LLLEIMKVSGWTPEEMVNITGRPQLIATLP---------------FGKYRGEPVADIAGR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   ++      +  +   L  
Sbjct: 191 DPGYLRWMLNNVKQLNPDLRLTLKH 215


>gi|325983556|ref|YP_004295958.1| exonuclease RNase T and DNA polymerase III [Nitrosomonas sp. AL212]
 gi|325533075|gb|ADZ27796.1| Exonuclease RNase T and DNA polymerase III [Nitrosomonas sp. AL212]
          Length = 181

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G +   DR  + A V  D Q   +    V      D+ L   D      
Sbjct: 6   NNLIWVDMEMTGLNPDNDRIIEVALVITDSQLNTVAEGPVLVVHQPDEILNGMDKWNQST 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
              +    K     + EAE   ++ +F  +        +  N+I  D  +      +   
Sbjct: 66  HAKSGLIDKVKASTLKEAEVEAQMVEFLKLHVPSGISPMCGNSICQDRRFMVRSMPQLEA 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|330720110|gb|EGG98518.1| Ribonuclease T [gamma proteobacterium IMCC2047]
          Length = 187

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 57/201 (28%), Gaps = 26/201 (12%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           ET G + A D   + A V +    + +     T  F  KP +    +  A+  TGI P  
Sbjct: 2   ETGGFNAATDALLEIAAVPIQMDEQGLLYPGETLSFHVKPFEGANIEEAAIKFTGIDPYH 61

Query: 68  ALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            LR    E E    I +              I+  +N  FD  +      R       + 
Sbjct: 62  PLRIANTEQEAMDGIFRTVRKAVKASGCKRAILVGHNAHFDHGFVNAAAERCDIKRNPFH 121

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             +      L  +       +                            +  AH A+ D 
Sbjct: 122 PFSNFDTVSLAGLAVGQTVLARACE-----------------VAEIEFSNEEAHSARYDT 164

Query: 182 YATLALVWLIREKKPKLFEYL 202
             T  L   I  +  +L  +L
Sbjct: 165 EKTAELFCFIANRWRELGGWL 185


>gi|262273022|ref|ZP_06050841.1| oligoribonuclease [Grimontia hollisae CIP 101886]
 gi|262222932|gb|EEY74238.1| oligoribonuclease [Grimontia hollisae CIP 101886]
          Length = 181

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D  + +  + A +  D + + +    V     +D+ L   D      
Sbjct: 6   KNLIWIDLEMTGLDPEVHKVIEIATIVTDAELKVLAEGPVLAIHQSDEELAKMDEWCTKT 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
              +   ++     + EA+  +    F           I  N++  D  +          
Sbjct: 66  HTRSGLVERVKESTINEAQAVKETIAFLQEWVPAGVSPICGNSVGQDRRFLYKHMPDLER 125

Query: 116 DSYRWS 121
             +  +
Sbjct: 126 FFHYRT 131


>gi|257464923|ref|ZP_05629294.1| ribonuclease T [Actinobacillus minor 202]
 gi|257450583|gb|EEV24626.1| ribonuclease T [Actinobacillus minor 202]
          Length = 216

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D     + +    +  +P +    + +++   G
Sbjct: 21  VIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPFEGANINQDSLKFNG 80

Query: 63  ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E     E  + + +          +I  +N  FD  + +    R    
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRKAMKDQGCQRAVIVAHNAAFDQGFLQAAAKR---- 136

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +  +    + + D            +   +      +F           +   AH 
Sbjct: 137 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQMANIAF-----------DGKQAHS 183

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 184 ALYDTEKTTELFCTMVNR 201


>gi|237798772|ref|ZP_04587233.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021625|gb|EGI01682.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 225

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +  D +         FF  +P +    +  A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETAINDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GI+     A
Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220


>gi|259908234|ref|YP_002648590.1| exodeoxyribonuclease X [Erwinia pyrifoliae Ep1/96]
 gi|224963856|emb|CAX55358.1| DNA exonuclease X [Erwinia pyrifoliae Ep1/96]
 gi|283478165|emb|CAY74081.1| exodeoxyribonuclease X [Erwinia pyrifoliae DSM 12163]
          Length = 221

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 49/190 (25%), Gaps = 38/190 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G         + A V V    + +            D     +A+ +  IT
Sbjct: 2   FRVIDTETCGL---QGGVVEVASVDV-ISGQILNPMSDLIS---PDRPISRQAMAVHKIT 54

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    +E +   R H       +     +N  FD                      
Sbjct: 55  EAMVRGKPAIE-QAIGRYH------GSPFYVAHNASFDRRM------------------L 89

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D +  M            WP       + +       +    ++AH A  D Y T
Sbjct: 90  PEMHGDWICTMTLARRL------WPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVT 143

Query: 185 LALVWLIREK 194
            AL+  I   
Sbjct: 144 AALLMRIMSF 153


>gi|227524779|ref|ZP_03954828.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290]
 gi|227088056|gb|EEI23368.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290]
          Length = 177

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 54/200 (27%), Gaps = 28/200 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET   +         A V V         T  F+     +       + + GI
Sbjct: 2   NFAAMDFET--ANAKRASACSLALVIVRNNQV----THEFYSLINPETDFSWRNINVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q          E    I   F+     ++  +N  FD+   +    R           
Sbjct: 56  HKQDVANAP-TFPELWDHIAPLFTANK--LVVAHNASFDNSVLKRTLERY---------- 102

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    D++   Y                 + KL  +     IE  + H+A  D  A
Sbjct: 103 ---------DLLLPHYLTLDTLKTSKQFYPQMVNHKLNTVCDELHIELEHHHNALDDSVA 153

Query: 184 TLALVWLIREKKPKLFEYLY 203
              ++   +++        +
Sbjct: 154 CANILLTQQQQFGNSVLRNF 173


>gi|187924944|ref|YP_001896586.1| oligoribonuclease [Burkholderia phytofirmans PsJN]
 gi|187716138|gb|ACD17362.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
           phytofirmans PsJN]
          Length = 203

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + V  D E  G +   DR  + A V  +   +++    V     +D+ L   D       
Sbjct: 19  NLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAKMDQWNQNTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +    +     V EA+ + +I  F SV   P    +  N+I  D  +           
Sbjct: 79  GRSGLIDRVKASTVSEADAAEQIRDFLSVFVPPGKSPMCGNSICQDRRFMARWMPDLERF 138

Query: 117 SYRW 120
            +  
Sbjct: 139 FHYR 142


>gi|324015053|gb|EGB84272.1| exonuclease [Escherichia coli MS 60-1]
          Length = 199

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60


>gi|284030055|ref|YP_003379986.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
 gi|283809348|gb|ADB31187.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
           17836]
          Length = 202

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAV 58
           M +  V  D E  G D+A D   + A +  D +   +         P    L        
Sbjct: 1   MNDRLVWIDCEMTGLDLAADALIEVAVLVTDYELNVLGEGIDLVIAPPPAALEQMGQFVR 60

Query: 59  FIT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
            +    G+  + A    + EAE      I  +   P    +  N++  D  +
Sbjct: 61  DMHTGSGLLDELATGIPLAEAEQQVLDFITGYVKEPRKAALAGNSVGTDRTF 112


>gi|21221244|ref|NP_627023.1| oligoribonuclease [Streptomyces coelicolor A3(2)]
 gi|289771467|ref|ZP_06530845.1| oligoribonuclease [Streptomyces lividans TK24]
 gi|11133768|sp|P57666|ORN_STRCO RecName: Full=Oligoribonuclease
 gi|9588056|dbj|BAB03461.1| oligoribonuclease [Streptomyces coelicolor A3(2)]
 gi|10303264|emb|CAC10102.1| oligoribonuclease [Streptomyces coelicolor A3(2)]
 gi|289701666|gb|EFD69095.1| oligoribonuclease [Streptomyces lividans TK24]
          Length = 200

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 57/206 (27%), Gaps = 45/206 (21%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  ++ D   + A +  D +   +        +P +  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVIRPPERALETMPEVVR 60

Query: 60  ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
                 +     G+             EA+    + +    P    +  N++  D  +  
Sbjct: 61  ------EMHTASGLLAELDGGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGF-- 112

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
                   D             D+  +      + P                    A  N
Sbjct: 113 -----LLRDMATLEGYLHYRIVDVSSIKELARRWYPR-------------------AYFN 148

Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
             E    H A AD+  ++A +   RE
Sbjct: 149 SPEKNGNHRALADIRESIAELRYYRE 174


>gi|300940651|ref|ZP_07155212.1| exonuclease [Escherichia coli MS 21-1]
 gi|300454539|gb|EFK18032.1| exonuclease [Escherichia coli MS 21-1]
          Length = 199

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60


>gi|301026596|ref|ZP_07190019.1| exonuclease [Escherichia coli MS 69-1]
 gi|300395429|gb|EFJ78967.1| exonuclease [Escherichia coli MS 69-1]
          Length = 220

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 64/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G           A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVDIASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E +     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-DVIPHYY------GSEWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  M+           WP       +              ++ H A  D Y T  
Sbjct: 97  -----ICTMKLARRL------WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA- 144

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
              LI       +             + +      P +  +  F   +     ++ VA  
Sbjct: 145 -ALLIDIMNTSGW-----------TAEQMADITGRPSLMTT--FTFGKYRGKAVSDVAER 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +     S    +   L  
Sbjct: 191 DPGYLRWLFNNLDSMSPELRLTLKH 215


>gi|300957822|ref|ZP_07170001.1| exonuclease [Escherichia coli MS 175-1]
 gi|300315482|gb|EFJ65266.1| exonuclease [Escherichia coli MS 175-1]
          Length = 199

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60


>gi|227886794|ref|ZP_04004599.1| exoribonuclease II [Escherichia coli 83972]
 gi|300816535|ref|ZP_07096756.1| exonuclease [Escherichia coli MS 107-1]
 gi|300821256|ref|ZP_07101404.1| exonuclease [Escherichia coli MS 119-7]
 gi|300899700|ref|ZP_07117927.1| exonuclease [Escherichia coli MS 198-1]
 gi|300905993|ref|ZP_07123717.1| exonuclease [Escherichia coli MS 84-1]
 gi|300922430|ref|ZP_07138550.1| exonuclease [Escherichia coli MS 182-1]
 gi|300929272|ref|ZP_07144748.1| exonuclease [Escherichia coli MS 187-1]
 gi|300974947|ref|ZP_07172786.1| exonuclease [Escherichia coli MS 45-1]
 gi|300975250|ref|ZP_07172914.1| exonuclease [Escherichia coli MS 200-1]
 gi|301047612|ref|ZP_07194678.1| exonuclease [Escherichia coli MS 185-1]
 gi|301302580|ref|ZP_07208710.1| exonuclease [Escherichia coli MS 124-1]
 gi|301325927|ref|ZP_07219348.1| exonuclease [Escherichia coli MS 78-1]
 gi|301646609|ref|ZP_07246475.1| exonuclease [Escherichia coli MS 146-1]
 gi|309796975|ref|ZP_07691375.1| exonuclease [Escherichia coli MS 145-7]
 gi|227836136|gb|EEJ46602.1| exoribonuclease II [Escherichia coli 83972]
 gi|281181261|dbj|BAI57591.1| oligoribonuclease [Escherichia coli SE15]
 gi|300300491|gb|EFJ56876.1| exonuclease [Escherichia coli MS 185-1]
 gi|300308749|gb|EFJ63269.1| exonuclease [Escherichia coli MS 200-1]
 gi|300356743|gb|EFJ72613.1| exonuclease [Escherichia coli MS 198-1]
 gi|300402160|gb|EFJ85698.1| exonuclease [Escherichia coli MS 84-1]
 gi|300410435|gb|EFJ93973.1| exonuclease [Escherichia coli MS 45-1]
 gi|300421249|gb|EFK04560.1| exonuclease [Escherichia coli MS 182-1]
 gi|300462765|gb|EFK26258.1| exonuclease [Escherichia coli MS 187-1]
 gi|300526145|gb|EFK47214.1| exonuclease [Escherichia coli MS 119-7]
 gi|300530765|gb|EFK51827.1| exonuclease [Escherichia coli MS 107-1]
 gi|300842105|gb|EFK69865.1| exonuclease [Escherichia coli MS 124-1]
 gi|300847280|gb|EFK75040.1| exonuclease [Escherichia coli MS 78-1]
 gi|301075156|gb|EFK89962.1| exonuclease [Escherichia coli MS 146-1]
 gi|308119388|gb|EFO56650.1| exonuclease [Escherichia coli MS 145-7]
 gi|315255507|gb|EFU35475.1| exonuclease [Escherichia coli MS 85-1]
 gi|315288511|gb|EFU47909.1| exonuclease [Escherichia coli MS 110-3]
 gi|315294059|gb|EFU53411.1| exonuclease [Escherichia coli MS 153-1]
 gi|315297605|gb|EFU56882.1| exonuclease [Escherichia coli MS 16-3]
 gi|324008605|gb|EGB77824.1| exonuclease [Escherichia coli MS 57-2]
 gi|324019342|gb|EGB88561.1| exonuclease [Escherichia coli MS 117-3]
          Length = 199

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60


>gi|21911144|ref|NP_665412.1| DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS315]
 gi|21905355|gb|AAM80215.1| putative DNA polymerase III epsilon subunit [Streptococcus pyogenes
           MGAS315]
          Length = 208

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + ++ +D E    +   D     Q + V+ D   ++++S + +      D         +
Sbjct: 18  DTYIAFDLE---FNTVNDVSHVIQGSAVKYDHH-KEVDSFDTY---VYTDVPLQSFINGL 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      VE E       F       +IGYN  + D          +  D Y+ 
Sbjct: 71  TGITSNKIAAAPKVE-EVMAAFKNFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ- 125

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL D      +   +GI          + +LQ +A   GI+    H++  D
Sbjct: 126 --------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLED 167

Query: 181 VYATLALVWLIREKKPK 197
              T A+     E    
Sbjct: 168 ARMTAAIYESFLETDTN 184


>gi|333011146|gb|EGK30560.1| exonuclease family protein [Shigella flexneri K-272]
 gi|333012659|gb|EGK32039.1| exonuclease family protein [Shigella flexneri K-227]
          Length = 181

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDTNLNILAE 42


>gi|188026358|ref|ZP_02961799.2| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC 25827]
 gi|188020096|gb|EDU58136.1| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC 25827]
          Length = 181

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 19/135 (14%)

Query: 1   MT----NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--------STEVFFCKPA 48
           M     N+ +  D E  G D   DR  + A +  D Q   +          T+       
Sbjct: 1   MMQKNENNLIWIDLEMTGLDPERDRIIEIATIVTDSQLNILAQGPVIAVHQTQAQLDLMD 60

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYY 105
           +  +    A  +     ++       E E      +F           I  N++  D  +
Sbjct: 61  EWNVNTHTASGL----VERVKSSTFSEREAELATIEFLEQWVPKGASPICGNSVGQDRRF 116

Query: 106 SRNIFYRNFYDSYRW 120
                       +  
Sbjct: 117 LFRYMPELESYFHYR 131


>gi|156932395|ref|YP_001436311.1| oligoribonuclease [Cronobacter sakazakii ATCC BAA-894]
 gi|156530649|gb|ABU75475.1| hypothetical protein ESA_00171 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 185

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 10 NNLIWIDLEMTGLDPRQDRIIEIATLVTDANLNILAE 46


>gi|13097555|gb|AAH03502.1| REXO2 protein [Homo sapiens]
          Length = 79

 Score = 57.1 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 14/39 (35%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          M    V  D E  G D+  D+  + A +  D     +  
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAE 77


>gi|71282475|ref|YP_271028.1| oligoribonuclease [Colwellia psychrerythraea 34H]
 gi|123630997|sp|Q47VZ4|ORN_COLP3 RecName: Full=Oligoribonuclease
 gi|71148215|gb|AAZ28688.1| oligoribonuclease [Colwellia psychrerythraea 34H]
          Length = 181

 Score = 57.1 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + +  D E  G +   D   + A +  D +   +    +F     DD L   +P  +   
Sbjct: 7   NLIWLDLEMTGLEPVEDVILEIAIIITDSELNILAQGPIFAISQTDDVLDNMNPWCIEHH 66

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
           G +   Q+     V  A  ++    F           +  N+I  D  +   
Sbjct: 67  GKSGLTQRCRDSEVSLAHATKESLAFVQEWVPQGKSPMCGNSIGQDRRFINK 118


>gi|327271053|ref|XP_003220302.1| PREDICTED: ERI1 exoribonuclease 3-like [Anolis carolinensis]
          Length = 229

 Score = 57.1 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 38  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHSQLTPFCTELTG 97

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  S    +    D      
Sbjct: 98  IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPSVKSIFVTCGDWDLKVM 145

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 146 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSGIDDC 205

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 206 KNIANIMKTLAHR 218


>gi|157373929|ref|YP_001472529.1| oligoribonuclease [Shewanella sediminis HAW-EB3]
 gi|157316303|gb|ABV35401.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
           HAW-EB3]
          Length = 181

 Score = 57.1 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G D ++DR  + A +  D++   +    V     +++ L   D      
Sbjct: 6   NNLIWVDLEMTGLDPSVDRVIEIATIVTDKELNILAEGPVIAIHQSEEQLARMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       E +       F S         +  N+I  D  +          
Sbjct: 66  HGESGLVDRVRASKYSEEQAVAMTIAFLSQHATKGDSPMCGNSIGQDRRFMNRYMPELED 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|126665981|ref|ZP_01736961.1| ribonuclease T [Marinobacter sp. ELB17]
 gi|126629303|gb|EAZ99920.1| ribonuclease T [Marinobacter sp. ELB17]
          Length = 214

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 49/173 (28%), Gaps = 14/173 (8%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKI-ESTEVFFCKPADDYL 52
           M+  F     V+ D ET G + A D   + A V V  D         T +    P +   
Sbjct: 11  MSRRFRGFLPVVVDVETAGFNPAKDALLEIAAVMVTMDENGFLHRGETYLQQIDPFEGAN 70

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYS 106
            +  ++  TGI P    R+ V E E    I                ++  +N  FD  + 
Sbjct: 71  FEQSSLDFTGIDPWDPEREAVPEREGLSEIFSPIRKAMKAFDCKRAVLVGHNATFDHNFV 130

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                R       +   +      L  +       +          D   +  
Sbjct: 131 FAASERADIKRNPFHPFSTFDTATLAGLAYGHTVLAQACKLARIPFDSKEAHS 183


>gi|134106503|ref|XP_778262.1| hypothetical protein CNBA2620 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260965|gb|EAL23615.1| hypothetical protein CNBA2620 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 214

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 50/188 (26%), Gaps = 13/188 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFITG 62
            V  D E  G D   DR  + A +  D +   ++    +  K   + L +         G
Sbjct: 13  LVWVDCEMTGLDFLNDRIIEIAVIITDGRLNPVDGGISYIIKTPKEVLDNMGDWCREQHG 72

Query: 63  IT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +   Q  L    +      ++  +           ++  +++  D  +           
Sbjct: 73  KSGLIQACLDSPYLYDTVVEKVLDYIRRWIPERGAGLLAGSSVHADMRFMLMGMPEVMKH 132

Query: 117 SYRW-----SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                    S      RW      +   + + +       D  A+  +L+       +  
Sbjct: 133 LSYRILDVSSVKEICRRWYPKVRAQEQESRTTECSHRALDDIRASIQELKFYRDNIFLPL 192

Query: 172 VNAHDAKA 179
               D + 
Sbjct: 193 EPVTDGRT 200


>gi|255528639|ref|ZP_05395399.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296185899|ref|ZP_06854305.1| exonuclease [Clostridium carboxidivorans P7]
 gi|255507668|gb|EET84148.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296049567|gb|EFG88995.1| exonuclease [Clostridium carboxidivorans P7]
          Length = 196

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 62/200 (31%), Gaps = 16/200 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ--WEKIESTEVFFCKPADDYLPDPEAV 58
           M    +  D ET G +    +  Q      D     E+       F    D   P  EA 
Sbjct: 1   MKK--IFLDTETTGLEP--GQIIQLTYCVCDINSRGEEKVCFAKNFFFDVDYVEPSAEA- 55

Query: 59  FITGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN--- 113
            + G + ++      G    + +  +           I +N  RFD  +    F R    
Sbjct: 56  -VHGFSVERLKTLSMGQEFKDAASEVAADLE--GGIFIAHNV-RFDQKFVTAEFDRLNSI 111

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
            ++  ++       +  +    +     +P   +         +  LQ        + V+
Sbjct: 112 HWNPAKFFCTMQYFKSKVNAKTKTGRLKNPRLEETMDFLRVDQNKVLQGAKKLFNCDDVD 171

Query: 174 AHDAKADVYATLALVWLIRE 193
            HDA+ DV   ++  +  R+
Sbjct: 172 FHDARYDVAGLVSCYYRARK 191


>gi|295131162|ref|YP_003581825.1| Oligoribonuclease [Propionibacterium acnes SK137]
 gi|291377019|gb|ADE00874.1| Oligoribonuclease [Propionibacterium acnes SK137]
          Length = 205

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 19/133 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PE 56
           M +  V  D E  G D+A D   + A +  D Q            KP   +L        
Sbjct: 1   MKDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVR 60

Query: 57  AVFIT---------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
            +  T         G+T  +A        +    I  +        +  N I  D  +  
Sbjct: 61  NMHTTSGLLAELDKGLTMAQAQD------QVLDYIRTYVPQAGKAPLAGNTIGTDRSFLA 114

Query: 108 NIFYRNFYDSYRW 120
               +     +  
Sbjct: 115 KDMPKLASYVHYR 127


>gi|119187187|ref|XP_001244200.1| hypothetical protein CIMG_03641 [Coccidioides immitis RS]
          Length = 137

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 11/111 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEA---VFI 60
            V  D E  G D   D   Q +    D     +   E F        Y+    +   V  
Sbjct: 10  LVWIDCEMTGLDPETDHILQISCFLTDADLNLL-EPEGFHVTVHQPQYILSSMSSWCVST 68

Query: 61  TGIT--PQKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYY 105
            G +      L      +E +      I ++     T ++  N++  D  +
Sbjct: 69  HGRSGLTAAVLDSTTTPSEAASALLAYIQKYIPESRTALLAGNSVHADRAF 119


>gi|327265893|ref|XP_003217742.1| PREDICTED: three prime repair exonuclease 1-like [Anolis
           carolinensis]
          Length = 329

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 73/253 (28%), Gaps = 36/253 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQ---FAGVRVD-RQWE--------------KIESTEVFF 44
             FV  D E  G   +  + A+   FA  R      +               ++      
Sbjct: 13  ETFVFMDLEATGLPPSRPKIAEMCLFAVTRHALENLQYRNSHPKPIPLFPRVVDK---LC 69

Query: 45  CKPADDYLPDPEAVFITGITPQK--ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIR 100
                D    P A  ITG+T +     +      +    +  FF    P  C++ +N   
Sbjct: 70  VCINPDKPFTPMASSITGLTNEMFSWNKKQKFNLDILHMMTAFFIRQHPPICLVAHNGCS 129

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG---ATS 157
           +D    +                +G    D L  M+A+   +    Q+            
Sbjct: 130 YDFPLLKAELSALGLSGL-----DGIYCADTLKAMKALDKENIQLSQFIYESKQCGKKMK 184

Query: 158 FKLQDL-ALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
           + LQD+          N+H A+ DV   + +    +     ++    + R  N  R +  
Sbjct: 185 YGLQDMYFRFYKAYPPNSHSAEGDVITLINIF--QQSATDLMWWMDSNARPFNTTRAMYQ 242

Query: 217 IQNMTPLVHVSGM 229
                P    +  
Sbjct: 243 DSERLPDFLQTHE 255


>gi|303235494|ref|ZP_07322106.1| exonuclease [Prevotella disiens FB035-09AN]
 gi|302484293|gb|EFL47276.1| exonuclease [Prevotella disiens FB035-09AN]
          Length = 183

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET     A     + AG+ + +  + +E+   +  +P +    +     + GI
Sbjct: 5   NFIAIDFET--ASNAQAAICE-AGISIVKGGKVVETR-SWLVRP-EGNAYNYWNTRVHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +          +    I  + +     I+  +N  FD    R         +   ++ 
Sbjct: 60  TAKDTAHAPE-FPQVWNEIMTYLADCP--ILVAHNAGFDMGCIRRSLAFYGLKTPEITY- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +RA                     KL+ L     I +   H A  D   
Sbjct: 116 --------YCSLRAARKIYDFECN-----------KLEFLCQKFEIPYGQHHRAGDDAAM 156

Query: 184 TLALV 188
              L 
Sbjct: 157 CAHLF 161


>gi|294140554|ref|YP_003556532.1| ribonuclease T [Shewanella violacea DSS12]
 gi|293327023|dbj|BAJ01754.1| ribonuclease T [Shewanella violacea DSS12]
          Length = 223

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 62/200 (31%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D +    ++ T  +  +P +    +P+A+   G
Sbjct: 20  VVIDVETAGFNSQTDALLEIAVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E E    I +           +  II  +N  FD  +      R    
Sbjct: 80  IDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCALK 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
                       +   D            +             L       GI+  N  A
Sbjct: 140 ------RTPFHPFATFDTAALSGLALGHTV-------------LAKACSIAGIDFDNNEA 180

Query: 175 HDAKADVYATLALVWLIREK 194
           H A  D   T  L   I  K
Sbjct: 181 HSALYDTERTAELFCHIVNK 200


>gi|182438534|ref|YP_001826253.1| oligoribonuclease [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326779181|ref|ZP_08238446.1| Oligoribonuclease [Streptomyces cf. griseus XylebKG-1]
 gi|11133770|sp|P57667|ORN_STRGR RecName: Full=Oligoribonuclease
 gi|6277197|dbj|BAA86266.1| ORF1 [Streptomyces griseus]
 gi|178467050|dbj|BAG21570.1| oligoribonuclease [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326659514|gb|EGE44360.1| Oligoribonuclease [Streptomyces cf. griseus XylebKG-1]
          Length = 201

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  +A D   + A +  D +   +        +P D  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60

Query: 60  -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            +    G+  + A    + +AE      + +    P    +  N++  D  +        
Sbjct: 61  QMHTASGLLDELAGGTTLADAEEQVLAYVREHVKEPGKAPLCGNSVGTDRGFLARDMREL 120

Query: 114 FYDSYRW 120
               +  
Sbjct: 121 EGYLHYR 127


>gi|254448875|ref|ZP_05062331.1| oligoribonuclease [gamma proteobacterium HTCC5015]
 gi|198261565|gb|EDY85854.1| oligoribonuclease [gamma proteobacterium HTCC5015]
          Length = 185

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           ++ +  D E  G D   D   + A +  D+    I    +      D  +   D      
Sbjct: 10  DNLIWIDLEMTGLDTVNDEIIEIATIVTDKALNVIAEGPMLAIHQPDAVMDGMDEWNTRQ 69

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTC---IIGYNNIRFDDYYSRNIFYRNFY 115
            G +   ++     V   E  R+  +F           +  N+I  D  +      +   
Sbjct: 70  HGQSGLTERVKNSDVNMQEAERQTIEFLEQYVGARKSPMCGNSICQDRRFMARQMPQLEA 129

Query: 116 DSYRW 120
             +  
Sbjct: 130 YFHYR 134


>gi|238603146|ref|XP_002395870.1| hypothetical protein MPER_03997 [Moniliophthora perniciosa FA553]
 gi|215467348|gb|EEB96800.1| hypothetical protein MPER_03997 [Moniliophthora perniciosa FA553]
          Length = 151

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 8/123 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITGI 63
           V  D E  G D   D+  + A +  +   E ++    +  K     L           G 
Sbjct: 16  VWIDCEMTGLDPETDKIMEIAVLITNGNLELVDEGIEYIVKLDRKQLDRMGEWCTKQHGE 75

Query: 64  T--PQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFYRNFYDS 117
           +   +  L     +   S  +  +           ++  N+I  D  +            
Sbjct: 76  SGLTKACLSSPFTKDYVSEEVLAYIKKWIPVQRTGVLAGNSIHMDRMFLAKEMPEITDWL 135

Query: 118 YRW 120
           +  
Sbjct: 136 HYR 138


>gi|332994645|gb|AEF04700.1| oligoribonuclease [Alteromonas sp. SN2]
          Length = 181

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 39/131 (29%), Gaps = 10/131 (7%)

Query: 1   MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55
           MT    + V  D E  G D       + A +  D Q   +    V      DD L   D 
Sbjct: 1   MTKHDSNLVWIDMEMTGLDPETCVVMEIATIVTDAQLNVLAEGPVIAVHQPDDVLDNMDE 60

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIF 110
               + G T    +     V EAE +R+   F S         +  N I  D  +     
Sbjct: 61  WCTRVHGETGLTARCRASSVNEAEAARQTMAFLSDYVDAGKSPLCGNTIGQDRRFMVKYM 120

Query: 111 YRNFYDSYRWS 121
                  +  S
Sbjct: 121 PELEDYFHYRS 131


>gi|304312854|ref|YP_003812452.1| Ribonuclease T [gamma proteobacterium HdN1]
 gi|301798587|emb|CBL46817.1| Ribonuclease T [gamma proteobacterium HdN1]
          Length = 223

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +    D      +  T  F   P      +  ++  TG
Sbjct: 19  VVIDVETGGFNSQTDALLEIAAISLHFDENGWLKKYRTSHFHVSPFAGANIEKASLEFTG 78

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P      A+ + V   E    + +  S       I+  +N  FD  +      R    
Sbjct: 79  IDPWHPFRNAVDEKVALTEIFGEVRKALSNLECKRAILVGHNAFFDHQFLFAATQRAAIK 138

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L  V       +                    +A         AH 
Sbjct: 139 RNPFHPFSCFDTATLGGVALGQTVLARAC-----------------IAAGISFNQKEAHS 181

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  +
Sbjct: 182 ALYDADKTADLFCHIVNR 199


>gi|254520783|ref|ZP_05132839.1| exonuclease [Clostridium sp. 7_2_43FAA]
 gi|226914532|gb|EEH99733.1| exonuclease [Clostridium sp. 7_2_43FAA]
          Length = 252

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 54/239 (22%), Gaps = 37/239 (15%)

Query: 4   HFVIYDYE---------TFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFF 44
           ++++ D E         T  ++                 Q   V+++   E   +     
Sbjct: 2   NYIVCDLEFNQKYIPSNTTDKNNNESIDSTMKQLPFEIIQIGAVKINENLEITSNFNELI 61

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +P      +P    IT I            +   +R   F       +  +        
Sbjct: 62  -RPIVYTDINPYVENITKINKDMLSSC-ETFSNVYKRFLNFLGDDEAVLCVWGKSDI--- 116

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
                F RN   +   +    +   D+               +      G        + 
Sbjct: 117 ---KEFLRNIKFNNLSTSLFPSKYIDV----------QKHTSKLFHIQKGKQIGLKTAVE 163

Query: 165 LANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
           + N       H+A  D   T  +   I         Y  + R      K+         
Sbjct: 164 MLNIDFENKFHNAFYDALYTYKVFKKIYNPSIIPKIYNDNNRTHKTKVKIDTDALFKQF 222


>gi|260801283|ref|XP_002595525.1| hypothetical protein BRAFLDRAFT_69069 [Branchiostoma floridae]
 gi|229280772|gb|EEN51537.1| hypothetical protein BRAFLDRAFT_69069 [Branchiostoma floridae]
          Length = 222

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 63/200 (31%), Gaps = 16/200 (8%)

Query: 5   FVIYDYETFGRDVALD----RPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVF 59
           + + D+E                +F  V VD   ++  +    F C+P ++ +       
Sbjct: 10  YCVVDFEATCIKPRRADFRTEIIEFGAVIVDGSNFQMADEFHEF-CRPVENPVLHQFCKE 68

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI  Q  +           R  ++ S        +  +  D  +  N   R+  +  +
Sbjct: 69  LTGI-QQDTVDSADPFPVVFDRFQKWLSNRGLIDSNF-ALVTDGIFDCNQIMRSQCEVSQ 126

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAK 178
            S+ +   R+  + +                   G  + ++ D+  A GI      H A 
Sbjct: 127 MSFPSFARRFSNIKI-------HYMQFMGIRLRRGQPTPRIPDMLRALGISQEGQLHSAI 179

Query: 179 ADVYATLALVWLIREKKPKL 198
           +D      ++  +  +    
Sbjct: 180 SDARNICRIMEALSRRLRAN 199


>gi|118790162|ref|XP_318057.3| AGAP004759-PA [Anopheles gambiae str. PEST]
 gi|116122385|gb|EAA13240.3| AGAP004759-PA [Anopheles gambiae str. PEST]
          Length = 191

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 37/133 (27%), Gaps = 23/133 (17%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
            + V  D E  G DV  DR  + A +  D +   I            + + + P+AV   
Sbjct: 7   QNLVWIDLEMTGLDVEKDRILEIACIVTDSKLNIIAK--------GPNIIINEPDAVLAG 58

Query: 61  --------TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSR 107
                      +   +   +      +  R +  F         C +  N+I  D  +  
Sbjct: 59  MNSWCKDHHSKSGLIEAVKKSTYSVDQAERDVLDFVKKYCPERKCPMAGNSIYMDRLFIM 118

Query: 108 NIFYRNFYDSYRW 120
                     +  
Sbjct: 119 KYMPTLNEYLHYR 131


>gi|110833585|ref|YP_692444.1| ribonuclease T [Alcanivorax borkumensis SK2]
 gi|110646696|emb|CAL16172.1| Ribonuclease T [Alcanivorax borkumensis SK2]
          Length = 228

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 55/205 (26%), Gaps = 26/205 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V ++   +          F   P      +  A+  TG
Sbjct: 24  VVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFPGANLEQAALDFTG 83

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LR  V E    + +             +  ++  +N  FD  +      R    
Sbjct: 84  IDPNNPLRGAVPEETALKGVFDPVRKAIKQHACSRAVLVGHNSFFDQGFLNAATDRTDIK 143

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L  ++      +                     A         AH 
Sbjct: 144 RNPFHPFSSFDTATLAGLVYGQTVLAKACE-----------------AAGIRFSQREAHS 186

Query: 177 AKADVYATLALVWLIREKKPKLFEY 201
           A  D   T  L   +  +   L  +
Sbjct: 187 ALYDATRTAELFCSMVNRFKTLGGW 211


>gi|255022249|ref|ZP_05294243.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756]
 gi|254968305|gb|EET25873.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756]
          Length = 211

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 25/191 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR-VDRQWE-KIESTEVFFCKPADDYLPDPEAVFITGI 63
           V+ D E+ G +       + A +       + ++     F  +P      DP A+   GI
Sbjct: 15  VVVDVESAGFEAHRHALLEIAAIVITHADGQWQLGPRHHFHVEPFAGAELDPAALAFNGI 74

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            P + LR  + EAE    +++              ++  +N  FD  +      R    +
Sbjct: 75  DPYQPLRGALPEAEVFGTLYRALRKAVKEAHCRRAVLVGHNAHFDLSFLHAAEKRLRLKN 134

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
             +   +      L  +  A    +    +                      +   AH A
Sbjct: 135 SPFHPFSVIDTVSLAALALAETVLAKAVQK-----------------AGLAWDGREAHSA 177

Query: 178 KADVYATLALV 188
             D   T  L 
Sbjct: 178 LYDAERTAELF 188


>gi|294791066|ref|ZP_06756224.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304]
 gi|294458963|gb|EFG27316.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304]
          Length = 282

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 5/110 (4%)

Query: 1   MTNHFVI-YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +   F++ +D ET G     D     + V  +                      +P A  
Sbjct: 21  LKESFLLGFDTETTGTRAGKDAIVSASLVLRNPALGFNGD-STQDWIINPGIPMNPRASQ 79

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYS 106
           + G T       G  +A+    I          N  ++ YN        +
Sbjct: 80  VNGFTDDYLREHGANQADSIALIANSIIKAQIRNIPLLAYNAPFDITMLN 129


>gi|237809227|ref|YP_002893667.1| Exonuclease RNase T and DNA polymerase III [Tolumonas auensis DSM
           9187]
 gi|237501488|gb|ACQ94081.1| Exonuclease RNase T and DNA polymerase III [Tolumonas auensis DSM
           9187]
          Length = 181

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G +   DR  + A +  D++   +    V     +DD L   D      
Sbjct: 6   QNLIWLDMEMTGLEPETDRILEIAMIVTDKELNVLAEGPVLAIHQSDDVLAGMDEWNTRT 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       EA+       F           +  N+I  D  +          
Sbjct: 66  HGESGLVDRVRASECDEAKAVATCLTFIREWVPEGKSPMCGNSIGQDRRFMVRYMPELEK 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|330973093|gb|EGH73159.1| ribonuclease T [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 213

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +  D +         FF  +P +    +  A+  TG
Sbjct: 21  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 80

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 81  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 140

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GI+     A
Sbjct: 141 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 181

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 182 HSARYDTEKTAELFCGIVNRWKEMGGW 208


>gi|330950000|gb|EGH50260.1| ribonuclease T [Pseudomonas syringae Cit 7]
          Length = 225

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +  D +         FF  +P +    +  A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GI+     A
Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220


>gi|321476304|gb|EFX87265.1| hypothetical protein DAPPUDRAFT_312568 [Daphnia pulex]
          Length = 219

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 21/203 (10%)

Query: 3   NHFVIYDYETFGR-DVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPA----DDYLPD 54
              V +D ET G  D       + +   +DR      +         +           +
Sbjct: 9   KSLVFFDLETTGFKDP---EITELSFCSIDRSQFLNCQRGEFPRITNRLNLCIKPSKQIE 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYR 112
           P+A  IT +           + +    +  F +      C++ +N  +FD       F R
Sbjct: 66  PKASEITKLDNCNLDHQSPFDEDVGNIVLSFLNRLKKPVCLVAHNGFKFDFPILLAEFSR 125

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEH 171
            +       + +     D L + R            P+  +   SF L+++     G + 
Sbjct: 126 LYG---IMDFPSDIFSVDSLAIFRN----LSQSPSSPNLKNIRLSFALKNVYYRIYGRDP 178

Query: 172 VNAHDAKADVYATLALVWLIREK 194
              H+A+ADV   L       E+
Sbjct: 179 EERHEAEADVKVLLLSAIATPEE 201


>gi|289676753|ref|ZP_06497643.1| ribonuclease T [Pseudomonas syringae pv. syringae FF5]
          Length = 225

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +  D +         FF  +P +    +  A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GI+     A
Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220


>gi|229004425|ref|ZP_04162172.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
          Rock1-4]
 gi|228756825|gb|EEM06123.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
          Rock1-4]
          Length = 44

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 1  MTNHFVIYDYETFGRDVA--LDRPAQFAGVRVDRQWEKIEST 40
          M+  +V+ D ET G       DR  Q A V V    E +E  
Sbjct: 1  MSKRYVVVDLETTGNSWKDGKDRITQIAAVVV-EDGEILEIF 41


>gi|66047122|ref|YP_236963.1| ribonuclease T [Pseudomonas syringae pv. syringae B728a]
 gi|302184721|ref|ZP_07261394.1| ribonuclease T [Pseudomonas syringae pv. syringae 642]
 gi|75500938|sp|Q4ZPJ7|RNT_PSEU2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|63257829|gb|AAY38925.1| Ribonuclease T [Pseudomonas syringae pv. syringae B728a]
          Length = 225

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +  D +         FF  +P +    +  A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GI+     A
Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220


>gi|312092765|ref|XP_003147452.1| exonuclease [Loa loa]
 gi|307757384|gb|EFO16618.1| exonuclease [Loa loa]
          Length = 401

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 10/208 (4%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           FV+ D+E               +F  + VD + ++I      + +P  +          T
Sbjct: 150 FVVIDFECTCEADLYDYNHEIIEFPAILVDVRKKEIVDVFHSYVRPLANPQLSEFCSAFT 209

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT +   +  +   +       +  +     +G   +R+            F+      
Sbjct: 210 GITQEMVDKA-LPFIDVLDSFRAWMQLH---HLGQKEVRYAFVTDGPWDIAKFFQMQCIQ 265

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D    +    +F+    +         S  L  L +         H    D 
Sbjct: 266 SKLNPIPHDFRFYVNVRRSFANKYCKKHPTQKINLSRMLTSLNMKF---EGREHSGLDDS 322

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKN 209
                +V  +   K +L       R K+
Sbjct: 323 KNIAKIVIRMLGDKSELRVNEKLVRIKD 350


>gi|282848807|ref|ZP_06258200.1| exonuclease [Veillonella parvula ATCC 17745]
 gi|282581461|gb|EFB86851.1| exonuclease [Veillonella parvula ATCC 17745]
          Length = 327

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 65/220 (29%), Gaps = 36/220 (16%)

Query: 4   HFVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           +++++D E     +                  Q   V+++ + + I+   +F       Y
Sbjct: 2   NYIVFDLEWNQPYSNDISFMKRTKMPLTGEIIQIGAVKLNEKMDIIDHFTMF---IKPQY 58

Query: 52  LP--DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           LP        +TGIT  +    GV      +   +         +  +    D    R  
Sbjct: 59  LPRMHKHVRELTGITTHEL-NHGVPFKTAMQYFQK---WCGDEYMLLSWGSDDILILREN 114

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
              +   +  +                          ++ +    + +  ++DL      
Sbjct: 115 LMLHKMKALSYDQ-------------WVDAQMIYSYQRYGTSQQYSVAHAMEDL--NIST 159

Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
           EH++AH+A  D   T  +   +   +  L   L    + N
Sbjct: 160 EHLSAHNALHDAVFTAHICQTLDIAQGILHYDLIRKESSN 199


>gi|227514420|ref|ZP_03944469.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
 gi|227087286|gb|EEI22598.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
          Length = 189

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 53/191 (27%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET             A + + R  +  +            +  +     + GI
Sbjct: 12  NFIAMDFET--ASAKRFSACSLA-ITIVRNSQIQDEFYTLINPQTPFFWRN---TQVHGI 65

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E    I +FF+ P+  +I +N    +      + +         +  
Sbjct: 66  HERDVKDAP-TFPEVWEHIQEFFT-PDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQT-- 121

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L   R                    + KL  +     I+  + H+A  D +A
Sbjct: 122 -----LDTLKTSR-------------QLFPAFPNHKLNTICDQLNIDLHHHHNALDDAHA 163

Query: 184 TLALVWLIREK 194
              ++      
Sbjct: 164 CANILLYQANH 174


>gi|224058011|ref|XP_002190758.1| PREDICTED: prion protein interacting protein [Taeniopygia guttata]
          Length = 271

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 80  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 139

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  S    +    D      
Sbjct: 140 IIQGMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPSVKSIFVTCGDWDLKVM 187

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 188 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSGIDDC 247

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 248 KNIANIMKTLAHR 260


>gi|72386559|ref|XP_843704.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175749|gb|AAX69877.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800236|gb|AAZ10145.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 397

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 53/194 (27%), Gaps = 33/194 (17%)

Query: 8   YDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +D E  G           D   +F            +       +P++     PE   +T
Sbjct: 90  FDLEFTGPPVFGPDGPTED-IMEFGFYSPAH-----DKVFSCLVRPSNGRCVSPEVTTLT 143

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT----------CIIGYNNIRFDDYYSRNIFY 111
            IT +    DG+   +   ++  F + P             ++ +     D    +    
Sbjct: 144 HITQKMLEEDGLPFRDAWAKVLDFLNTPEPQELPGAEKRLLVLSHGGKLADVSLIKWTLE 203

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IE 170
            +  +             D   ++R  +   P        D    ++ L DL        
Sbjct: 204 ASGMELPSNIIFG-----DTFHLIRDAHRRRPVT-----LDKHPPTWGLSDLVQWLRIPP 253

Query: 171 HVNAHDAKADVYAT 184
            + AH A  D   T
Sbjct: 254 TLPAHRAGNDAKMT 267


>gi|270676235|ref|ZP_06222692.1| ribonuclease T [Haemophilus influenzae HK1212]
 gi|270316426|gb|EFA28313.1| ribonuclease T [Haemophilus influenzae HK1212]
          Length = 164

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  +P +    +PE++   G
Sbjct: 11  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 70

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E +    + Q        +     II  +N  FD  +      R    
Sbjct: 71  IDIHNPLRGTVPELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVMAAAERTGVK 130

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAF 141
              +          L  +M      
Sbjct: 131 RNPFHPFGMFDTASLAGLMFGQTVL 155


>gi|148827473|ref|YP_001292226.1| ribonuclease T [Haemophilus influenzae PittGG]
 gi|166228566|sp|A5UGD7|RNT_HAEIG RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|148718715|gb|ABQ99842.1| ribonuclease T [Haemophilus influenzae PittGG]
          Length = 229

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 54/198 (27%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G D   D   + A +  ++D       +    F  +P +    +PE++   G
Sbjct: 23  VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E      + Q        +     II  +N  FD  +      R    
Sbjct: 83  IDIHNPLRGAVSELNAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +M                            A     +   AH 
Sbjct: 143 RNPFHPFGMFDTASLAGLMFGQTVLVKACQ-----------------AAKIPFDGKQAHS 185

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 186 ALYDTERTAKLFCYMVNH 203


>gi|238755817|ref|ZP_04617148.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473]
 gi|238705975|gb|EEP98361.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473]
          Length = 249

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 45/191 (23%), Gaps = 38/191 (19%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F + D ET G D       + A +      E            + D     EA+ I  I
Sbjct: 31  NFRVIDTETCGLD---GGIVEIASLDF-IDGEITNPMSDL---VSPDRPISIEAMAIHHI 83

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +       +     +         +   + +N              R         W 
Sbjct: 84  TEEMVEGKPRIAVAVGK------YQGSPYYVAHNAPFD----------RGVLPEMGGEW- 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +   +   A  PD          A    +   A          H A  D Y 
Sbjct: 127 --------ICTYKLARALYPDIKYSNQYLRYALRLDVTPPADLY------PHRALYDCYI 172

Query: 184 TLALVWLIREK 194
           T AL   I   
Sbjct: 173 TAALFQRIMRD 183


>gi|212721064|ref|NP_001131502.1| hypothetical protein LOC100192839 [Zea mays]
 gi|194691708|gb|ACF79938.1| unknown [Zea mays]
          Length = 249

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 15/115 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G D+  DR  + A +  D +           I  ++       +       
Sbjct: 70  LVWIDLEMTGLDITKDRILEIACIITDGKLTKQIEGPDLVISQSKDCLDNMDEWCKTHHA 129

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
           A  +T    ++ L+  + E +   ++  F        T ++  N++  D  + + 
Sbjct: 130 ASGLT----ERVLQSELSEHDAEAKVLDFVRKHINSGTPLLAGNSVYVDFLFLKK 180


>gi|227357138|ref|ZP_03841507.1| exoribonuclease II [Proteus mirabilis ATCC 29906]
 gi|227162670|gb|EEI47637.1| exoribonuclease II [Proteus mirabilis ATCC 29906]
          Length = 192

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D Q   +  
Sbjct: 17 NNLIWIDLEMTGLDPERDRIIEIATIVTDPQLNILAE 53


>gi|254427614|ref|ZP_05041321.1| exonuclease superfamily [Alcanivorax sp. DG881]
 gi|196193783|gb|EDX88742.1| exonuclease superfamily [Alcanivorax sp. DG881]
          Length = 181

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G     DR  + A +  D +   +  
Sbjct: 6  NNLIWIDLEMTGLSPENDRIIEIATIVTDAELNVLAE 42


>gi|148977184|ref|ZP_01813811.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
 gi|145963466|gb|EDK28729.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
          Length = 210

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 52/200 (26%), Gaps = 21/200 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V  D ET   D         A  ++            F  +       D  ++ I  I 
Sbjct: 30  YVSLDCETTSLDPNQAELVTIAATKIIGNRIITSKP--FEVRLRAPQSLDCNSIKIHRIR 87

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            Q   + G+ E +    +  F    N  ++GY+         R    +  +       + 
Sbjct: 88  HQDL-KHGIEEKQALIELLSFI--GNRPLVGYHIRYDKKILDRACLKQLGFPLPNRLMEV 144

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADVYA 183
                D L+       F                  +  +     +    N HDA  D  +
Sbjct: 145 SQLYQDKLERQLPNAYF---------------DLSMDAICRQLDLPIPVNKHDALQDAIS 189

Query: 184 TLALVWLIREKKPKLFEYLY 203
              +   ++      F   Y
Sbjct: 190 AALIFVRLKHGDLPRFNSSY 209


>gi|21231607|ref|NP_637524.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768271|ref|YP_243033.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. 8004]
 gi|23821916|sp|Q8P8S1|ORN_XANCP RecName: Full=Oligoribonuclease
 gi|81305754|sp|Q4UVB0|ORN_XANC8 RecName: Full=Oligoribonuclease
 gi|21113297|gb|AAM41448.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573603|gb|AAY49013.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. 8004]
          Length = 194

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 13/128 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
           +  +  D E  G D   D   + A +  D Q   +              L   EA+    
Sbjct: 9   DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIA---HSLETLEAMDEWN 65

Query: 59  -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112
                 +   Q+ L   V  A+   +   F S         +  N+I  D  +      R
Sbjct: 66  RNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMSR 125

Query: 113 NFYDSYRW 120
                +  
Sbjct: 126 LERYFHYR 133


>gi|300770507|ref|ZP_07080386.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762983|gb|EFK59800.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 203

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 31/203 (15%)

Query: 3   NHFVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             F+  D+E  T     A +       VRVD+     +        P ++Y+       +
Sbjct: 4   QSFIAIDFELAT----AAYNSVCSVGIVRVDQ-GVITDEFYSLVKPPKNEYMWQ--TTRV 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI P+        E E   +I           +  +N +FD             D    
Sbjct: 57  HGIKPKDTADAPTFE-EIYPKIKDLLQNRK---MVAHNEKFDREVLSKTMKACGLD---- 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            +   +         +               D G    KL       GI+  N H+A +D
Sbjct: 109 -YRELHLPVMWECTSKIYR------------DKGFKKTKLNLCCEIMGIDL-NHHEALSD 154

Query: 181 VYATLALVWLIREKKPKLFEYLY 203
             A   L     E   +L + ++
Sbjct: 155 AKAAAFLYLKQNEVTQELLDRVF 177


>gi|213962982|ref|ZP_03391241.1| exonuclease, RNase T and DNA polymerase III [Capnocytophaga
           sputigena Capno]
 gi|213954323|gb|EEB65646.1| exonuclease, RNase T and DNA polymerase III [Capnocytophaga
           sputigena Capno]
          Length = 183

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 54/200 (27%), Gaps = 25/200 (12%)

Query: 1   MTNHFVIYDYETF---GRDV--ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           MTN  +I D E     G      +    +     +D    +I        KP       P
Sbjct: 1   MTNKIIIIDLEATCWEGIPPKGEVSEIIEIGICLLDTLTGEISDNRGILIKPT-HSKISP 59

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T +TP+   R+GV   E  + + + +         Y N    +   +    R   
Sbjct: 60  FCTQLTTLTPELVAREGVSFEEAFQILKKEYQAYQYTWASYGNYD-RNMLQKQCALRKLP 118

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
              R    N             +     +  Q P R     +     +           H
Sbjct: 119 YPMRNEHIN-------------VKELFQEVTQHPKRLGMHQALNYLKI-----PLVGTHH 160

Query: 176 DAKADVYATLALVWLIREKK 195
             K D Y    ++  +   +
Sbjct: 161 RGKDDAYNIAKIMHCLSHYQ 180


>gi|300864441|ref|ZP_07109312.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC
           6506]
 gi|300337585|emb|CBN54460.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC
           6506]
          Length = 192

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 40/138 (28%), Gaps = 8/138 (5%)

Query: 5   FVIYDYETF-----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
           +++ D E         +       +   V V+ +    ++  + F  KP    +      
Sbjct: 13  YLVLDLEATCCDRETINREHMEIIEIGAVMVEPKNLTIVDEFQTFI-KPVRHPILTEFCK 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +T I+ ++         E    +  + S  +  + G         + ++  +       
Sbjct: 72  SLTSISQKQVDLAP-TYPEAIALLKNWLSGYSNAVFGSWGDYDRKQFQQDSNFHKVPFPI 130

Query: 119 RWSWDNGNSRWDLLDVMR 136
            +   N    +     +R
Sbjct: 131 AYPHVNLKQLFTEQQGLR 148


>gi|300721471|ref|YP_003710746.1| oligoribonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297627963|emb|CBJ88512.1| oligoribonuclease [Xenorhabdus nematophila ATCC 19061]
          Length = 181

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D +   +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATIVTDSELNILAE 42


>gi|74009144|ref|XP_549356.2| PREDICTED: similar to Three prime repair exonuclease 2 (3-5
           exonuclease TREX2) [Canis familiaris]
          Length = 236

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 63/210 (30%), Gaps = 36/210 (17%)

Query: 3   NHFVIYDYETFGRDVALD-RPAQFAGVRV----------DRQW-----EKIESTEVFFCK 46
             FV  D E  G    +D   A+ +   V          D          ++      C 
Sbjct: 8   ETFVFLDLEATGL-PNIDPEVAEISLFAVHRSSLENPDRDESGAPVVPRVLDKLT--LCM 64

Query: 47  PADDYLPDPEAVFITGITPQKA---LRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRF 101
            + +     +A  ITG++        + G   A   R +  F S      C++ +N   +
Sbjct: 65  -SPERPFTAKASEITGLSSDSLARCRKAGFDHA-VVRTLQAFLSRQEGPVCLVAHNGFDY 122

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D         R        +     +  D L  +R++      G +      G   + L 
Sbjct: 123 DFPLLCTELRRLGAHLPPDT-----TCLDTLPALRSLDRAHSHGTR----AQGCKGYSLG 173

Query: 162 DL-ALANGIEHVNAHDAKADVYATLALVWL 190
            L       E   AH A+ DV+  L +   
Sbjct: 174 SLFRRYFRAEPSAAHSAEGDVHTLLMVFLH 203


>gi|78047756|ref|YP_363931.1| oligoribonuclease [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325928670|ref|ZP_08189846.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas perforans
           91-118]
 gi|123585062|sp|Q3BTI2|ORN_XANC5 RecName: Full=Oligoribonuclease
 gi|78036186|emb|CAJ23877.1| oligoribonuclease [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325540966|gb|EGD12532.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas perforans
           91-118]
          Length = 194

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV--- 58
           +  +  D E  G D   D   + A +  D Q   +    E+    P +      EA+   
Sbjct: 9   DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLE----TLEAMDEW 64

Query: 59  --FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
                  +   Q+ L   V  A+   +   F S         +  N+I  D  +      
Sbjct: 65  NRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMS 124

Query: 112 RNFYDSYRW 120
           R     +  
Sbjct: 125 RLERYFHYR 133


>gi|50086122|ref|YP_047632.1| oligoribonuclease [Acinetobacter sp. ADP1]
 gi|59798028|sp|Q6F805|ORN_ACIAD RecName: Full=Oligoribonuclease
 gi|49532098|emb|CAG69810.1| oligoribonuclease [Acinetobacter sp. ADP1]
          Length = 183

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 38/131 (29%), Gaps = 11/131 (8%)

Query: 1   MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54
           M++      +  D E  G D   D+  + A +  D     +    V      D  L   D
Sbjct: 1   MSSTQDTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNIVAEGPVLAVHQPDRILNAMD 60

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
                  G +   ++  R  +   +   +  +F        T  +  N+I  D  +   +
Sbjct: 61  EWNTRQHGQSGLIERVRRSKLTARDVELQTLEFLKKWVNPKTSPMCGNSICQDRRFMHRL 120

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 121 MPELEQYFHYR 131


>gi|71737285|ref|YP_276026.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257486623|ref|ZP_05640664.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289624955|ref|ZP_06457909.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650468|ref|ZP_06481811.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488734|ref|ZP_07006763.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|123635391|sp|Q48F11|RNT_PSE14 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|71557838|gb|AAZ37049.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298156807|gb|EFH97898.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320325627|gb|EFW81689.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327089|gb|EFW83103.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330867245|gb|EGH01954.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330879065|gb|EGH13214.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330889564|gb|EGH22225.1| ribonuclease T [Pseudomonas syringae pv. mori str. 301020]
 gi|331010105|gb|EGH90161.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 225

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 67/207 (32%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +   +R +   E T  F  +P +    +  A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GI+     A
Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220


>gi|19745746|ref|NP_606882.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS8232]
 gi|19747886|gb|AAL97381.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS8232]
          Length = 833

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 39/206 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDPEAV 58
            + + D E  G           A +           + ++S E            D   V
Sbjct: 22  KYAVVDLEATGAGPN-------ASIIQVGIVIIQGNKIMDSYET---DVNPHESLDEHIV 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT ++  +      + +  I+Q       CI   +N++FD        +       
Sbjct: 72  HLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIFVAHNVKFDANLLAEALFLEG---- 123

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
              ++    R D +++ +  +                  + L  L+    I+   AH A 
Sbjct: 124 ---YELTIPRVDTVELAQLFFPRFE-------------KYNLSHLSRQLNIDLAEAHTAI 167

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           AD  AT  L   + +K   L     +
Sbjct: 168 ADARATAILFLRLLQKIESLPIECLE 193


>gi|254468761|ref|ZP_05082167.1| oligoribonuclease [beta proteobacterium KB13]
 gi|207087571|gb|EDZ64854.1| oligoribonuclease [beta proteobacterium KB13]
          Length = 184

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60
           N+ +  D E  G +   D+  + A +  D   E I    V+  K +++ L   +A     
Sbjct: 6   NNLIWIDMEMTGLNPVTDKIIEVAVIVTDPHLEIIAEAPVYVIKQSNELLDSMDAWNTNT 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
              +    K     + E    R +  F S     N   +  N+I  D  +  N   +   
Sbjct: 66  HSKSGLIDKVKHSQITENVAERELINFLSQYVDKNKSPMCGNSICQDRRFMANYMPQLES 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|227550322|ref|ZP_03980371.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330]
 gi|227180544|gb|EEI61516.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330]
          Length = 201

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET             A V V +  + ++           +       V I GI
Sbjct: 26  NFVAMDFETANHQPYSA--CSLALVMV-KNSQIVDEFYTL---IQPETPFFWRNVQIHGI 79

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E  + I  +F      ++  +N  FD                     
Sbjct: 80  HQEDVRNAPK-FPEVWQTIQPYFQKN--LLVVAHNAAFDTKVLA---------------- 120

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + +  Y                 + +L  +     I+  + HDA  D  A
Sbjct: 121 ---GCLDYYHLEQPNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHHHDALEDSRA 177

Query: 184 TLALVWLIREK 194
              ++    +K
Sbjct: 178 CAEILLYQEKK 188


>gi|226498878|ref|NP_001148000.1| UTP-glucose-P-uridyltransferase homolog [Zea mays]
 gi|194706488|gb|ACF87328.1| unknown [Zea mays]
 gi|195615060|gb|ACG29360.1| exonuclease [Zea mays]
          Length = 499

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 26/191 (13%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET        +     +F  + V  R+  ++ S                 +V  
Sbjct: 35  IAFFDVETS-VPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPADPASAVSAASVRC 93

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT            + +  ++   +       G+N +RFD     +   R  +     
Sbjct: 94  NGITRDAVSAAP-PFRDVADAVYDLLN--GRVWAGHNIVRFD-----SARIREAFTEIGR 145

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           S        D L ++                   A   K+  LA   G+     H +  D
Sbjct: 146 SPPQPKGMIDTLPLL------------TQRFGRRAGDMKMASLANYFGLG-KQRHRSLDD 192

Query: 181 VYATLALVWLI 191
           V   L ++   
Sbjct: 193 VRMNLEVLKYC 203


>gi|110835071|ref|YP_693930.1| oligoribonuclease [Alcanivorax borkumensis SK2]
 gi|123050323|sp|Q0VME0|ORN_ALCBS RecName: Full=Oligoribonuclease
 gi|110648182|emb|CAL17658.1| oligoribonuclease [Alcanivorax borkumensis SK2]
          Length = 181

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G     DR  + A +  D +   +  
Sbjct: 6  NNLIWIDLEMTGLSPENDRIIEIATIVTDAELNVLAE 42


>gi|197287169|ref|YP_002153041.1| oligoribonuclease [Proteus mirabilis HI4320]
 gi|194684656|emb|CAR46589.1| oligoribonuclease [Proteus mirabilis HI4320]
          Length = 181

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D Q   +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATIVTDPQLNILAE 42


>gi|77359544|ref|YP_339119.1| DNA polymerase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874455|emb|CAI85676.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 207

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 20/188 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +   +++ D E  G D         A V ++ Q  K+  ++    K   +    P     
Sbjct: 21  LKQRYLVIDLELTGLDAKQHEIVSLAWVVIENQCIKMSQSQHLINKEVKNLAQSP---VY 77

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI        G         + + F+    CI+ ++N   D  +           + + 
Sbjct: 78  HGINNDNVA-AGQSLHSILEHLSEHFND---CILVFHNAMLDWGF--------LKPALKN 125

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +      +  L  +          G++            L +      +   + H A  D
Sbjct: 126 ANITTRPKLILCTLQIEKKRLQHQGVEIKQD-----DLTLNECRNRYELPSYHCHHALTD 180

Query: 181 VYATLALV 188
             AT  L 
Sbjct: 181 AQATAELF 188


>gi|120555417|ref|YP_959768.1| ribonuclease T [Marinobacter aquaeolei VT8]
 gi|166228568|sp|A1U3L2|RNT_MARAV RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|120325266|gb|ABM19581.1| RNAse T [Marinobacter aquaeolei VT8]
          Length = 221

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 61/210 (29%), Gaps = 35/210 (16%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVR--VDRQW-EKIESTEVFFCKPADDYL 52
           M+  F     V+ D ET G +   D   + A V   +D     +   T V    P +   
Sbjct: 11  MSQRFRGFLPVVVDVETAGFNPERDALLEIAAVMLTMDEDGWLRRGETHVQQIDPFEGAN 70

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYS 106
            +  A+  TGI P    R+ V E E    I                ++  +N  FD  + 
Sbjct: 71  LEQSALDFTGIDPWNPEREAVPEREGLSEIFSPIRKAVKEHDCKRAVLVGHNATFDHNFV 130

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R       +      S +D   +    Y  +                 L      
Sbjct: 131 FAAALRADIKRNPFH---PFSTFDTATLAGLAYGHTV----------------LAQACKL 171

Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREK 194
            GI   N  AH A  D   T  L   I  +
Sbjct: 172 AGIPFSNKEAHSAAYDAEKTADLFCGIVNR 201


>gi|289426433|ref|ZP_06428176.1| exonuclease [Propionibacterium acnes SK187]
 gi|289153161|gb|EFD01879.1| exonuclease [Propionibacterium acnes SK187]
          Length = 205

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 19/133 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PE 56
           M +  V  D E  G D+A D   + A +  D Q            KP   +L        
Sbjct: 1   MKDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVR 60

Query: 57  AVFIT---------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
            +  T         G+T  +A        +    I  +        +  N I  D  +  
Sbjct: 61  NMHTTSGLLAELDKGLTMAQAQD------QVLDYIRTYVPQAGKAPLAGNTIGTDRSFLA 114

Query: 108 NIFYRNFYDSYRW 120
               +     +  
Sbjct: 115 KDMPKLESYVHYR 127


>gi|269797822|ref|YP_003311722.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
 gi|269094451|gb|ACZ24442.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
          Length = 327

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 65/220 (29%), Gaps = 36/220 (16%)

Query: 4   HFVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           +++++D E     +                  Q   V+++ + + I+   +F       Y
Sbjct: 2   NYIVFDLEWNQPYSNDISFMKRTKMPLTGEIIQIGAVKLNEKMDIIDHFTMF---IKPQY 58

Query: 52  LP--DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           LP        +TGIT  +    GV      +   +         +  +    D    R  
Sbjct: 59  LPRMHKHVRELTGITTHEL-NHGVPFKTAMQYFQK---WCGDEYMLLSWGSDDILILREN 114

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
              +   +  +                          ++ +    + +  ++DL      
Sbjct: 115 LMLHKMKALSYDQ-------------WVDAQIIYSYQRYGTSQQYSVAHAMEDL--NIST 159

Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
           EH++AH+A  D   T  +   +   +  L   L    + N
Sbjct: 160 EHLSAHNALHDAVFTAHICQTLDIAQGILHYDLIRKESSN 199


>gi|332687228|ref|YP_004457002.1| exonuclease [Melissococcus plutonius ATCC 35311]
 gi|332371237|dbj|BAK22193.1| exonuclease [Melissococcus plutonius ATCC 35311]
          Length = 176

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 29/191 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET             A V+V      ++           +     + + I GI
Sbjct: 2   NFIAMDFET--ASHERHSACSLALVKV-ENSRIVDEYYTL---IQPETQFFWKNIQIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+          E  + I  FF +    +I  +N  FD     +             + 
Sbjct: 56  HPEDVTDAPK-FPEIWQGIQLFFQLNQ--LIVAHNAAFDCNVLASC---------LNYYK 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  L  ++    F  +            + KL  +  A  I   N H+A  D  A
Sbjct: 104 LPQPNYLSLCTVKTSRKFFREL----------PNHKLDTICRALNIPL-NHHNALDDSRA 152

Query: 184 TLALVWLIREK 194
              ++    + 
Sbjct: 153 CAKILLYQEKN 163


>gi|121705836|ref|XP_001271181.1| RNA exonuclease Rex2, putative [Aspergillus clavatus NRRL 1]
 gi|119399327|gb|EAW09755.1| RNA exonuclease Rex2, putative [Aspergillus clavatus NRRL 1]
          Length = 217

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 9/128 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPADDYL-PDPEAV 58
           T+  V  D E  G D   D+  Q      D     ++    E     P        P  +
Sbjct: 7   TDPLVWIDCEMTGLDPETDQILQICCYITDANLTLLDRTGFETIIHHPRSTLEAMSPWCI 66

Query: 59  FITGIT------PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
              G T                 A+    I +F   P T ++  N++  D  +     Y 
Sbjct: 67  DTHGRTGLSAAVLASTTDAATAAADLLAYIQRFVPRPRTALLAGNSVHADKMFLARGPYA 126

Query: 113 NFYDSYRW 120
                  +
Sbjct: 127 AVLGWLHY 134


>gi|294139250|ref|YP_003555228.1| oligoribonuclease [Shewanella violacea DSS12]
 gi|293325719|dbj|BAJ00450.1| oligoribonuclease [Shewanella violacea DSS12]
          Length = 181

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G D   DR  + A +  D++   +    V      D+ L   D      
Sbjct: 6   NNLIWVDLEMTGLDPETDRVIEIATIVTDKELNILAEGPVIAIHQTDEQLATMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   ++       E +      +F S         +  N+I  D  +      +   
Sbjct: 66  HGESGLVERVRSSQYNEDDAIAMTIKFISQYVPQGVSPMCGNSIGQDRRFMNKYMGKLED 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|153872366|ref|ZP_02001282.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
 gi|152071167|gb|EDN68717.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
          Length = 178

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 4/129 (3%)

Query: 312 EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ---LYDGFFADV 368
                         EN   L+  T +  +    + +       D+D +     + F +  
Sbjct: 31  YWNNLSPERQALVEENKNWLQSHTEIFRKIIQYHQEFRYPKIPDLDIEAALYQNDFLSAS 90

Query: 369 DRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKML 428
           +     +           +   F D  L +L  R   RN+P  L     +D+ ++    +
Sbjct: 91  ELAKCRQFHAATLPDKIEMVTQFEDIDLRKLASRLLCRNYPDNLPPMLTRDFEDYV-WRV 149

Query: 429 TRSRIEEYK 437
                E+  
Sbjct: 150 NPENEEDAY 158


>gi|85058292|ref|YP_453994.1| oligoribonuclease [Sodalis glossinidius str. 'morsitans']
 gi|123520179|sp|Q2NW86|ORN_SODGM RecName: Full=Oligoribonuclease
 gi|84778812|dbj|BAE73589.1| putative oligoribonuclease [Sodalis glossinidius str. 'morsitans']
          Length = 181

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
           N+ +  D E  G D   DR  + A +  D     +          ++       D  +  
Sbjct: 6   NNLIWIDLEMTGLDPERDRIIEIATLVTDANLAILAEGPVLAIYQSDAQLALMNDWNVRT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +      +  +  + E     +   F +         I  N+I  D  +      
Sbjct: 66  HTASGL----VDRVRQSALDEEAAVAQTLAFLADWVPAGKSPICGNSIGQDRRFLFRYMP 121

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 122 ALEAYFHYR 130


>gi|16763172|ref|NP_458789.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. CT18]
 gi|16767599|ref|NP_463214.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|29144651|ref|NP_807993.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|56416144|ref|YP_153219.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|62182799|ref|YP_219216.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|161505144|ref|YP_001572256.1| oligoribonuclease [Salmonella enterica subsp. arizonae serovar
          62:z4,z23:-- str. RSK2980]
 gi|161617623|ref|YP_001591588.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi B str. SPB7]
 gi|167553558|ref|ZP_02347307.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA29]
 gi|167994766|ref|ZP_02575857.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          4,[5],12:i:- str. CVM23701]
 gi|168231388|ref|ZP_02656446.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Kentucky str. CDC 191]
 gi|168237081|ref|ZP_02662139.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
 gi|168244869|ref|ZP_02669801.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Heidelberg str. SL486]
 gi|168263295|ref|ZP_02685268.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Hadar str. RI_05P066]
 gi|168467067|ref|ZP_02700915.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Newport str. SL317]
 gi|168822519|ref|ZP_02834519.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|194446159|ref|YP_002043608.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Newport str. SL254]
 gi|194451819|ref|YP_002048396.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Heidelberg str. SL476]
 gi|194472818|ref|ZP_03078802.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Kentucky str. CVM29188]
 gi|194733922|ref|YP_002117294.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. CVM19633]
 gi|197248139|ref|YP_002149267.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Agona str. SL483]
 gi|197263840|ref|ZP_03163914.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA23]
 gi|197365070|ref|YP_002144707.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|198244671|ref|YP_002218237.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Dublin str. CT_02021853]
 gi|200389037|ref|ZP_03215649.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Virchow str. SL491]
 gi|204927249|ref|ZP_03218451.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Javiana str. GA_MM04042433]
 gi|207859499|ref|YP_002246150.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|213052288|ref|ZP_03345166.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E00-7866]
 gi|213419498|ref|ZP_03352564.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E01-6750]
 gi|213428680|ref|ZP_03361430.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E02-1180]
 gi|213583916|ref|ZP_03365742.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-0664]
 gi|213650568|ref|ZP_03380621.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. J185]
 gi|213850085|ref|ZP_03380983.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. M223]
 gi|238910511|ref|ZP_04654348.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Tennessee str. CDC07-0191]
 gi|289805592|ref|ZP_06536221.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
 gi|289829989|ref|ZP_06547440.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-3139]
 gi|54038786|sp|P65600|ORN_SALTI RecName: Full=Oligoribonuclease
 gi|54041583|sp|P65599|ORN_SALTY RecName: Full=Oligoribonuclease
 gi|59797989|sp|Q5PLG7|ORN_SALPA RecName: Full=Oligoribonuclease
 gi|81309509|sp|Q57GM7|ORN_SALCH RecName: Full=Oligoribonuclease
 gi|25338361|pir||AI1047 oligoribonuclease (EC 3.1.-.-) [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16422913|gb|AAL23173.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|16505480|emb|CAD06830.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi]
 gi|29140290|gb|AAO71853.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|56130401|gb|AAV79907.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|62130432|gb|AAX68135.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|160866491|gb|ABX23114.1| hypothetical protein SARI_03281 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
 gi|161366987|gb|ABX70755.1| hypothetical protein SPAB_05483 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194404822|gb|ACF65044.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Newport str. SL254]
 gi|194410123|gb|ACF70342.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Heidelberg str. SL476]
 gi|194459182|gb|EDX48021.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Kentucky str. CVM29188]
 gi|194709424|gb|ACF88645.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. CVM19633]
 gi|195630566|gb|EDX49178.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Newport str. SL317]
 gi|197096547|emb|CAR62157.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|197211842|gb|ACH49239.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Agona str. SL483]
 gi|197242095|gb|EDY24715.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA23]
 gi|197289951|gb|EDY29310.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
 gi|197939187|gb|ACH76520.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Dublin str. CT_02021853]
 gi|199606135|gb|EDZ04680.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Virchow str. SL491]
 gi|204323914|gb|EDZ09109.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Javiana str. GA_MM04042433]
 gi|205322027|gb|EDZ09866.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA29]
 gi|205327412|gb|EDZ14176.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          4,[5],12:i:- str. CVM23701]
 gi|205334333|gb|EDZ21097.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Kentucky str. CDC 191]
 gi|205336339|gb|EDZ23103.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Heidelberg str. SL486]
 gi|205341098|gb|EDZ27862.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|205347926|gb|EDZ34557.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Hadar str. RI_05P066]
 gi|206711302|emb|CAR35680.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|261249445|emb|CBG27309.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. D23580]
 gi|267996684|gb|ACY91569.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 14028S]
 gi|301160842|emb|CBW20373.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. SL1344]
 gi|312915451|dbj|BAJ39425.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. T000240]
 gi|320088780|emb|CBY98538.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Weltevreden str. 2007-60-3289-1]
 gi|321223225|gb|EFX48295.1| 3'-to-5' oligoribonuclease (orn) [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
 gi|322615515|gb|EFY12435.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 315996572]
 gi|322618575|gb|EFY15464.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-1]
 gi|322622012|gb|EFY18862.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-3]
 gi|322627084|gb|EFY23876.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 495297-4]
 gi|322631043|gb|EFY27807.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 515920-1]
 gi|322637738|gb|EFY34439.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 515920-2]
 gi|322642402|gb|EFY39006.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 531954]
 gi|322645663|gb|EFY42188.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. NC_MB110209-0054]
 gi|322650497|gb|EFY46905.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. OH_2009072675]
 gi|322653449|gb|EFY49779.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. CASC_09SCPH15965]
 gi|322659724|gb|EFY55967.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 19N]
 gi|322662065|gb|EFY58281.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 81038-01]
 gi|322666186|gb|EFY62364.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MD_MDA09249507]
 gi|322672606|gb|EFY68717.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 414877]
 gi|322676036|gb|EFY72107.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 366867]
 gi|322680520|gb|EFY76558.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 413180]
 gi|322684586|gb|EFY80590.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 446600]
 gi|323192901|gb|EFZ78127.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 609458-1]
 gi|323197223|gb|EFZ82363.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 556150-1]
 gi|323201660|gb|EFZ86724.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 609460]
 gi|323206174|gb|EFZ91136.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 507440-20]
 gi|323213183|gb|EFZ97985.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 556152]
 gi|323215556|gb|EGA00300.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB101509-0077]
 gi|323219541|gb|EGA04026.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB102109-0047]
 gi|323227844|gb|EGA11998.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB110209-0055]
 gi|323229014|gb|EGA13143.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. MB111609-0052]
 gi|323236374|gb|EGA20450.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 2009083312]
 gi|323237506|gb|EGA21567.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 2009085258]
 gi|323241828|gb|EGA25857.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. 315731156]
 gi|323248023|gb|EGA31960.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2009159199]
 gi|323254646|gb|EGA38457.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008282]
 gi|323258295|gb|EGA41972.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008283]
 gi|323259572|gb|EGA43206.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008284]
 gi|323265845|gb|EGA49341.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008285]
 gi|323270289|gb|EGA53737.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008287]
 gi|332991164|gb|AEF10147.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. UK-1]
          Length = 181

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDASLNILAE 42


>gi|297621033|ref|YP_003709170.1| hypothetical protein wcw_0797 [Waddlia chondrophila WSU 86-1044]
 gi|297376334|gb|ADI38164.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 195

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 55/192 (28%), Gaps = 12/192 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  D ET G D  + +P   A    D  +     E  +  F    D  L DPE++ + G 
Sbjct: 4   IFLDIETTGLDPFIHKPIDLAFKIYDIRQDVSIAEYQQKIFQSIEDWNLHDPESIKVNGY 63

Query: 64  TPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T +        E    E  + +               N  FD  +            Y  
Sbjct: 64  TYRDLEEGKRSEKVAEEVIQLLLSHGIERGKAFFICQNPAFDRAFFDR-----IIPVYTQ 118

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKA 179
              N    W  L  M  ++  + +  +     +   +     +    GIE     H A  
Sbjct: 119 EKLNWPYHWLDLASMYWVFLLNEEKNERSQLSE-TINLSKNAIGKRFGIEQEAVPHRAMN 177

Query: 180 DVYATLALVWLI 191
            V   +     +
Sbjct: 178 GVEHLIKCYRAV 189


>gi|170756602|ref|YP_001781306.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           B1 str. Okra]
 gi|169121814|gb|ACA45650.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           B1 str. Okra]
          Length = 195

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 52/197 (26%), Gaps = 10/197 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    +  D ET G +       Q      D      E          D    +  A  I
Sbjct: 1   MKK--IFIDTETTGLEP--GEIIQLTYCVCDINSRGEEKVSFAKNFFFDVDYIEESAEAI 56

Query: 61  TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            G + +K      G    + +  I       +   I +N      + +      N  +  
Sbjct: 57  HGFSVEKLKILSKGKKFKDLASEISSDLK--DGIFIAHNVNFDRKFVTAEFNRLNDMNWI 114

Query: 119 RWSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +      +  +     R      P   +     +      L+        + V  HD
Sbjct: 115 PKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGFHD 174

Query: 177 AKADVYATLALVWLIRE 193
           A+ DV A ++  +  + 
Sbjct: 175 ARYDVAALVSCYYRAKR 191


>gi|297538700|ref|YP_003674469.1| Exonuclease RNase T and DNA polymerase III [Methylotenera sp. 301]
 gi|297258047|gb|ADI29892.1| Exonuclease RNase T and DNA polymerase III [Methylotenera sp. 301]
          Length = 186

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
            N+ +  D E  G     DR  + A V  D     +  + VF    +D  L   +A    
Sbjct: 10  QNNLIWLDMEMSGLLPDSDRILELAAVVTDADLNVLGESPVFVIHQSDAVLDGMDAWNKG 69

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   +K     + E+E + ++  F       N   +  N+I  D  +         
Sbjct: 70  AHGRSGLIEKVKASTLDESEATLQMIAFLKQFVPANKSPMCGNSICQDRRFMARYMPDLE 129

Query: 115 YDSYRW 120
              +  
Sbjct: 130 SYFHYR 135


>gi|307945043|ref|ZP_07660379.1| exonuclease RNase T and DNA polymerase III [Roseibium sp.
           TrichSKD4]
 gi|307770916|gb|EFO30141.1| exonuclease RNase T and DNA polymerase III [Roseibium sp.
           TrichSKD4]
          Length = 231

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 56/194 (28%), Gaps = 39/194 (20%)

Query: 4   HFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            F + D+ET G      +   + A   +D + + I             +   PE + +  
Sbjct: 2   KFRVIDFETTGLPSDTRKAICEAAFCDLDAETDIIADPVSTLV--DPGHSIPPETMAVHH 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  Q          E  R +     +    +   +NI F+ ++     +R          
Sbjct: 60  IRDQDVAGCP-SPTEACRMLMG--GMGEEDVFVAHNIEFEKFFFGGGDHR---------- 106

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-----NGIEHVNAHDA 177
                          I         WP     A S K Q L         G   + AH A
Sbjct: 107 --------------WICTLKCAVRLWP----DAPSHKNQVLRYWKGLTDLGDLALPAHRA 148

Query: 178 KADVYATLALVWLI 191
             D + T  L+ L+
Sbjct: 149 GPDTFVTAHLLRLM 162


>gi|229588692|ref|YP_002870811.1| ribonuclease T [Pseudomonas fluorescens SBW25]
 gi|229360558|emb|CAY47415.1| ribonuclease T [Pseudomonas fluorescens SBW25]
          Length = 223

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 68/220 (30%), Gaps = 37/220 (16%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYL 52
           M   F     V+ D ET G + A D   + A   + +D Q     E T  F  +P +   
Sbjct: 21  MAERFRGYLPVVIDVETGGFNCATDALLEIAATTIGMDEQGFVFPEHTHFFRVEPFEGAN 80

Query: 53  PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +  A+  TGI        A+ +     +  R + +          I+  +N  FD  + 
Sbjct: 81  IEAAALEFTGIKLDHPLRMAVSEEAALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 140

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R       +      S +D   +    Y  +                 L     A
Sbjct: 141 NAAVARLDMKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQA 181

Query: 167 NGIEHV--NAHDAKADVYATLALVWLIREK--KPKLFEYL 202
            GI+     AH A+ D   T  L   I  +  +   +E  
Sbjct: 182 AGIDFDGREAHSARYDTEKTAELFCGIVNRWKQMGGWEDF 221


>gi|261855262|ref|YP_003262545.1| ribonuclease T [Halothiobacillus neapolitanus c2]
 gi|261835731|gb|ACX95498.1| ribonuclease T [Halothiobacillus neapolitanus c2]
          Length = 241

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 56/207 (27%), Gaps = 44/207 (21%)

Query: 6   VIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLP 53
           V+ D ET G +   D                   VD   + I  +  ++   +P +    
Sbjct: 41  VVVDVETGGLNPQTDALLELAAVLLD--------VDANGKIIPVDRIQI-HVQPFEGANL 91

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQ------FFSVPNTCIIGYNNIRFDDYYSR 107
           +P ++ I GI      R  + EAE  ++  Q        +     ++  +N  FD     
Sbjct: 92  NPVSMKINGIDIDHPFRCALDEAEALKQFFQPIRQRVKLNGARRAVLVGHNAAFDLAVIN 151

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
               R       +   +      L  +       +                     A+  
Sbjct: 152 AACERTCNKKNPFHPFSTFDTVTLSALAVGETVLAKALE-----------------AIGL 194

Query: 168 GIEHVNAHDAKADVYATLALVWLIREK 194
             +   AH A  D   T  L   I   
Sbjct: 195 EWDSQQAHGALYDAEQTAELFCRIINH 221


>gi|90108543|pdb|1YTA|A Chain A, Crystal Structure Of Oligoribonuclease, The Lone
          Essential Exoribonuclease In Escherichia Coli
 gi|90108544|pdb|1YTA|B Chain B, Crystal Structure Of Oligoribonuclease, The Lone
          Essential Exoribonuclease In Escherichia Coli
 gi|90108545|pdb|1YTA|C Chain C, Crystal Structure Of Oligoribonuclease, The Lone
          Essential Exoribonuclease In Escherichia Coli
 gi|90108546|pdb|1YTA|D Chain D, Crystal Structure Of Oligoribonuclease, The Lone
          Essential Exoribonuclease In Escherichia Coli
          Length = 180

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 5  NNLIWIDLEXTGLDPERDRIIEIATLVTDANLNILAE 41


>gi|238026568|ref|YP_002910799.1| oligoribonuclease [Burkholderia glumae BGR1]
 gi|237875762|gb|ACR28095.1| Oligoribonuclease (3'-5' exoribonuclease) [Burkholderia glumae
           BGR1]
          Length = 202

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFIT 61
           + V  D E  G +   DR  + A V  +   +K     V     +D+ L   +A      
Sbjct: 19  NLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDKAVEGPVLAIHQSDETLAKMDAWNQSTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +    +     V EA  + +I  F +    P    +  N+I  D  +           
Sbjct: 79  GRSGLIDRVRASTVSEAAAAAQIEAFLAQYVSPGKSPMCGNSICQDRRFMARWMPELERF 138

Query: 117 SYRW 120
            +  
Sbjct: 139 FHYR 142


>gi|205355112|ref|YP_002228913.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|205274893|emb|CAR39959.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
          Length = 181

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPERDRIIEIATLVTDASLNILAE 42


>gi|70999440|ref|XP_754439.1| RNA exonuclease Rex2 [Aspergillus fumigatus Af293]
 gi|66852076|gb|EAL92401.1| RNA exonuclease Rex2, putative [Aspergillus fumigatus Af293]
 gi|159127455|gb|EDP52570.1| RNA exonuclease Rex2, putative [Aspergillus fumigatus A1163]
          Length = 250

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 11/129 (8%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP----DPEA 57
           T+  V  D E  G +   D   Q      D     ++  E F      D        P  
Sbjct: 67  TDPLVWIDCEMTGLNPETDTILQICCYITDANLNLLD-PEGFETIIHHDRSVLDSMSPWC 125

Query: 58  VFITGIT--PQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFY 111
           V   G T      L         +  +  +       P T ++  N++  D  +     Y
Sbjct: 126 VDTHGRTGLTAAVLASTTNSTTAAESLLAYIQRYVPHPRTALLAGNSVHADKMFLAKEPY 185

Query: 112 RNFYDSYRW 120
           +   +   +
Sbjct: 186 KAVLEWLHY 194


>gi|28898888|ref|NP_798493.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879442|ref|ZP_05891797.1| ribonuclease T [Vibrio parahaemolyticus AN-5034]
 gi|29611937|sp|P46232|RNT_VIBPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|28807107|dbj|BAC60377.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633]
 gi|308093530|gb|EFO43225.1| ribonuclease T [Vibrio parahaemolyticus AN-5034]
 gi|328474555|gb|EGF45360.1| ribonuclease T [Vibrio parahaemolyticus 10329]
          Length = 214

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 62/201 (30%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  R+D +      ST  F  +P +    + EA+   G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLEKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E E  + I++        S  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVSEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAYGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 181 AHSALYDTQKTAELFCGIVNK 201


>gi|167035320|ref|YP_001670551.1| ribonuclease T [Pseudomonas putida GB-1]
 gi|166861808|gb|ABZ00216.1| ribonuclease T [Pseudomonas putida GB-1]
          Length = 224

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 62/215 (28%), Gaps = 31/215 (14%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVF-FCKPADDYL 52
           M   F     V+ D ET G + A D   + A V +  D +         F   +P +   
Sbjct: 22  MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGAN 81

Query: 53  PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +  A+  TGI        A+ +     +  R + +          I+  +N  FD  + 
Sbjct: 82  IEAAALEFTGIKLDHPLRMAVSEESALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 141

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                RN      +   +      L  +       +          DG            
Sbjct: 142 NAAVARNDLKRNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGR----------- 190

Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201
                  AH A+ D   T  L   I  +  ++  +
Sbjct: 191 ------EAHSARYDTEKTAELFCGIVNRWKEMGGW 219


>gi|314937698|ref|ZP_07845022.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a04]
 gi|314943353|ref|ZP_07850126.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133C]
 gi|314953543|ref|ZP_07856454.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133A]
 gi|314994073|ref|ZP_07859394.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133B]
 gi|314996850|ref|ZP_07861856.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a01]
 gi|313589017|gb|EFR67862.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a01]
 gi|313591508|gb|EFR70353.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133B]
 gi|313594422|gb|EFR73267.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133A]
 gi|313597934|gb|EFR76779.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133C]
 gi|313642944|gb|EFS07524.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a04]
          Length = 194

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET             A V V +  + ++           +       V I GI
Sbjct: 19  NFVAMDFETANHQPYSA--CSLALVMV-KNSQIVDEFYTL---IQPETPFFWRNVQIHGI 72

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E  + I  +F      ++  +N  FD                     
Sbjct: 73  HQEDVRNAPK-FPEVWQTIQPYFQKN--RLVVAHNAAFDTKVLA---------------- 113

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + +  Y                 + +L  +     I+  + HDA  D  A
Sbjct: 114 ---GCLDYYHLEQPNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHHHDALEDSRA 170

Query: 184 TLALVWLIREK 194
              ++    +K
Sbjct: 171 CAEILLYQEKK 181


>gi|312959243|ref|ZP_07773761.1| ribonuclease T [Pseudomonas fluorescens WH6]
 gi|311286503|gb|EFQ65066.1| ribonuclease T [Pseudomonas fluorescens WH6]
          Length = 225

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 68/220 (30%), Gaps = 37/220 (16%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYL 52
           M   F     V+ D ET G + A D   + A   + +D Q     E T  F  +P +   
Sbjct: 23  MAERFRGYLPVVIDVETGGFNCATDALLEIAATTIGMDEQGFVYPEHTHFFRVEPFEGAN 82

Query: 53  PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +  A+  TGI        A+ +     +  R + +          I+  +N  FD  + 
Sbjct: 83  IEAAALEFTGIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 142

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R       +      S +D   +    Y  +                 L     A
Sbjct: 143 NAAVARLDMKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQA 183

Query: 167 NGIEHV--NAHDAKADVYATLALVWLIREK--KPKLFEYL 202
            GI+     AH A+ D   T  L   I  +  +   +E  
Sbjct: 184 AGIDFDGREAHSARYDTEKTAELFCGIVNRWKQMGGWEDF 223


>gi|302534542|ref|ZP_07286884.1| oligoribonuclease [Streptomyces sp. C]
 gi|302443437|gb|EFL15253.1| oligoribonuclease [Streptomyces sp. C]
          Length = 200

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 58/200 (29%), Gaps = 33/200 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD---DYLPDPEA 57
           M +  V  D E  G  +  D   + A +  D +   +        +P D   + +PD   
Sbjct: 1   MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPDVVR 60

Query: 58  VFIT--GITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
              T  G+  + A    +   EA+    + +    P    +  N++  D  +        
Sbjct: 61  EMHTASGLLDELAAGTTLADAEAQVLAYVREHVKEPRKAPLCGNSVGTDRGFLSR----- 115

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D             D+  V      + P                    A  N      
Sbjct: 116 --DMPALESHLHYRIVDVSSVKELARRWYPR-------------------AYFNSPPKNG 154

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A AD+  ++A +   RE
Sbjct: 155 NHRALADIKESIAELRYYRE 174


>gi|224586194|ref|YP_002639993.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|224470722|gb|ACN48552.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|322717301|gb|EFZ08872.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. A50]
 gi|323132691|gb|ADX20121.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 4/74]
 gi|326626042|gb|EGE32387.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Dublin str. 3246]
 gi|326630269|gb|EGE36612.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 9]
          Length = 185

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 10 NNLIWIDLEMTGLDPERDRIIEIATLVTDASLNILAE 46


>gi|220934199|ref|YP_002513098.1| exonuclease [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995509|gb|ACL72111.1| exonuclease [Thioalkalivibrio sp. HL-EbGR7]
          Length = 236

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 4/110 (3%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET G D++         V V     ++   +    +  +    D + + + GI+
Sbjct: 42  FVVIDVETTGLDLSRSELLSVGLVPVGPHGIELGGLDEIVLR-REVTRIDKDNLVVHGIS 100

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P +    GV   E    + +      T ++ ++         R +  +  
Sbjct: 101 PTE-SAAGVDIHEALSSVLERIGK--TWLVAFHADFDRIILGRTLRKQLG 147


>gi|242039735|ref|XP_002467262.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
 gi|241921116|gb|EER94260.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
          Length = 505

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 26/191 (13%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET        +     +F  + V  R+  ++ S                 +V  
Sbjct: 41  IAFFDVETS-VPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPADPVSAVSAASVRC 99

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT            + +  ++   +       G+N +RFD     +   R  +     
Sbjct: 100 NGITRDAVSGAP-PFRDVADAVYDLLN--GRVWAGHNIVRFD-----SARIREAFTEIGR 151

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           S        D L ++                   A   K+  LA   G+     H +  D
Sbjct: 152 SPPQPKGMIDTLPLL------------TQRFGRRAGDMKMASLANYFGLG-KQRHRSLDD 198

Query: 181 VYATLALVWLI 191
           V   L ++   
Sbjct: 199 VRMNLEVLKYC 209


>gi|163856231|ref|YP_001630529.1| oligoribonuclease [Bordetella petrii DSM 12804]
 gi|163259959|emb|CAP42260.1| oligoribonuclease [Bordetella petrii]
          Length = 181

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 48/165 (29%), Gaps = 13/165 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
           N  V  D E  G D   +R  + A V  +     +    V      D  L   +A+    
Sbjct: 6   NRLVWLDMEMTGLDPTKERIIEVAVVVTEPDLTVVAEGPVLVVHQPDSLL---DAMDNWN 62

Query: 59  -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112
               G +    K     + EA+  R + +F +         +  N I  D  +       
Sbjct: 63  KSTHGKSGLIDKVRASTLTEAQAERMLLEFLAQHVPAGKSPLCGNTISQDRRFMYAYMPE 122

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
                +  + D    +      + A+Y       +  +  D   S
Sbjct: 123 LERFFHYRNLDVSTLKELARRWVPAVYKGFEKKSKHEALADIYES 167


>gi|238854851|ref|ZP_04645181.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3]
 gi|260664138|ref|ZP_05864991.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US]
 gi|282933929|ref|ZP_06339277.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|313472352|ref|ZP_07812844.1| exonuclease [Lactobacillus jensenii 1153]
 gi|238832641|gb|EEQ24948.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3]
 gi|239529790|gb|EEQ68791.1| exonuclease [Lactobacillus jensenii 1153]
 gi|260562024|gb|EEX27993.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US]
 gi|281302018|gb|EFA94272.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
          Length = 177

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 55/195 (28%), Gaps = 28/195 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET  R          A V V    +  +               D   + +  I
Sbjct: 2   NFIAMDFETANRHPESA--CSLALVMVRNN-KIADRFYTV---INPQMPFDGRNISVHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TP          AE   +I          ++  +N +FD    +    R           
Sbjct: 56  TPSDVKDAP-TMAEVWPKIKDL--YQPGMLVAAHNAKFDANVLKMSLARY---------- 102

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    D+    Y            +    + KL  ++ A  +E  + H+A +D  A
Sbjct: 103 ---------DIAEPHYLVIDTLKTSRLFEPDLPNHKLNTVSEALDVELWHHHNALSDSEA 153

Query: 184 TLALVWLIREKKPKL 198
              ++    EK    
Sbjct: 154 CAGILIKQNEKMGDE 168


>gi|120553343|ref|YP_957694.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
 gi|120323192|gb|ABM17507.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 201

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 49/206 (23%), Gaps = 33/206 (16%)

Query: 1   MTNH---FVIYDYETF---GRDV---ALD----RPAQFAGVRVDRQWEKIESTEVFFCKP 47
           M +     ++ D E+      +      D       +       R  + +  +  F  KP
Sbjct: 1   MRDKSLALLVVDLESTCWEDLNPEGKRQDVDSMEIIEIGCALATRDGQLL-KSASFLVKP 59

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
                       +TGIT            E    ++++    +   I  +   +D  +  
Sbjct: 60  TRFPQLSDFCTALTGITQSMVDEAP-TYPEAIEALNKWLGELSDEFIWCSWGNYDRRHVE 118

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALA 166
               +                        + Y        W           L + LA  
Sbjct: 119 AQNQQTGSRP-----------------AMSRYPHLNLKRIWRRTTGQKQKNGLANALAFH 161

Query: 167 NGIEHVNAHDAKADVYATLALVWLIR 192
           +     + H    D    + L+  + 
Sbjct: 162 DLTFEGSHHRGVDDARNIVRLLPFMD 187


>gi|71066188|ref|YP_264915.1| ribonuclease T [Psychrobacter arcticus 273-4]
 gi|71039173|gb|AAZ19481.1| RNAse T [Psychrobacter arcticus 273-4]
          Length = 239

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 60/203 (29%), Gaps = 27/203 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A + V    + +           +P +    +P A+  TG
Sbjct: 36  VVVDVETAGFNAQTDALLEIACIPVLMNEQGVFYPGEALNAHIEPFEGANLEPSALAFTG 95

Query: 63  ITPQKALRDGVVEAE--FSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P   LR  + E E    RRI +             C++  +N  FD  +      R  
Sbjct: 96  IDPNNPLRKAIAEDEKTALRRIFKGLKEVRRNEDCRQCVLIGHNAHFDLAFLNAAVLRTN 155

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
             S+    +        L  +           +                A     +  +A
Sbjct: 156 NKSHNPFHNFSVFDTVTLSALAFGQTVLARACK----------------AAGLDFDGNDA 199

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D   T  L   I    P 
Sbjct: 200 HSALYDTQKTAELFCYILNNYPM 222


>gi|67524821|ref|XP_660472.1| hypothetical protein AN2868.2 [Aspergillus nidulans FGSC A4]
 gi|40744263|gb|EAA63439.1| hypothetical protein AN2868.2 [Aspergillus nidulans FGSC A4]
          Length = 802

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 9/128 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TE-VFFCKPADDYLPDPEAV 58
           T+  V  D E  G D   D   Q      D     +++   E V     +         +
Sbjct: 615 TDPLVWIDCEMTGLDPTTDHILQICCFITDADLNLLDATGFEAVIHVPQSALDSMSQWCI 674

Query: 59  FITGIT--PQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
              G T   Q+     V      A+    I ++   P T ++  N++  D  +     Y 
Sbjct: 675 DTHGRTGLTQRVQNSTVTPEAAAADLLAYIKRYIPKPRTALLAGNSVHADKAFLACGPYA 734

Query: 113 NFYDSYRW 120
              +   +
Sbjct: 735 AILEWLHY 742


>gi|321460150|gb|EFX71195.1| hypothetical protein DAPPUDRAFT_327373 [Daphnia pulex]
          Length = 215

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 24/129 (18%)

Query: 3   NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCK--------------P 47
              V +D ET G       R  +         +  ++ ++   CK               
Sbjct: 13  KSLVFFDLETTGLPSDHPARITEL-------NFCGVDRSQFIGCKAKKMPRVTNRLNLCI 65

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYY 105
                 DP A  ++ +      +    +A     I  F        C+I +N  +FD   
Sbjct: 66  DPSRPIDPVATDLSKLDNANLGQQSKFDANVLNIIVSFLDRLQKLICLIAHNGTKFDFPI 125

Query: 106 SRNIFYRNF 114
                 +  
Sbjct: 126 FNAEIAQLG 134


>gi|254823127|ref|ZP_05228128.1| oligoribonuclease [Mycobacterium intracellulare ATCC 13950]
          Length = 215

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 44/160 (27%), Gaps = 20/160 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M +  V  D E  G D+  D+  + A +  D     +          ADD         +
Sbjct: 1   MRDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVIH-ADDAALSAMGDVV 59

Query: 61  TGITPQKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
           T    +   R G++             EA     I Q    P T  +  N+I  D  +  
Sbjct: 60  T----EMHSRSGLIDEVRASAVDLATAEAMVLDYIGQHVKQPKTAPLAGNSIATDRAFIV 115

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
                   D+Y        S    L        +     +
Sbjct: 116 R--DMPALDTYLHYRMIDVSSIKELCRRWYPRIYFGQPTK 153


>gi|145629185|ref|ZP_01784984.1| oligoribonuclease [Haemophilus influenzae 22.1-21]
 gi|145639128|ref|ZP_01794735.1| oligoribonuclease [Haemophilus influenzae PittII]
 gi|148827138|ref|YP_001291891.1| oligoribonuclease [Haemophilus influenzae PittGG]
 gi|166216262|sp|A5UFF2|ORN_HAEIG RecName: Full=Oligoribonuclease
 gi|144978688|gb|EDJ88411.1| oligoribonuclease [Haemophilus influenzae 22.1-21]
 gi|145271690|gb|EDK11600.1| oligoribonuclease [Haemophilus influenzae PittII]
 gi|148718380|gb|ABQ99507.1| oligoribonuclease [Haemophilus influenzae PittGG]
 gi|309750709|gb|ADO80693.1| Oligoribonuclease [Haemophilus influenzae R2866]
          Length = 182

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 19/133 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +          ++    K  D    
Sbjct: 5   KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                         ++     + E     +   F           I  N+I  D  +   
Sbjct: 63  ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118

Query: 109 IFYRNFYDSYRWS 121
                    +   
Sbjct: 119 YMPDLADYFHYRH 131


>gi|240947949|ref|ZP_04752376.1| ribonuclease T [Actinobacillus minor NM305]
 gi|240297743|gb|EER48202.1| ribonuclease T [Actinobacillus minor NM305]
          Length = 216

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D     + +    +  +P +    + +++   G
Sbjct: 21  VIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPFEGANINQDSLKFNG 80

Query: 63  ITPQKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYR 112
           I     LR  V E     E  + + +          +I  +N  FD  + +    R
Sbjct: 81  IDIDNPLRGAVPENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAAKR 136


>gi|224083100|ref|XP_002189554.1| PREDICTED: REX2, RNA exonuclease 2 homolog (S. cerevisiae)
           [Taeniopygia guttata]
          Length = 232

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 7/127 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    V  D E  G DV  D+  + A +  D     +           D+ L        
Sbjct: 34  MGQRMVWVDLEMTGLDVEKDQILEMACLITDCDLNVLAEGPNLIINQPDEVLESKSEWCK 93

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +   +      +   +       F      P  C +  N++  D  +      + 
Sbjct: 94  EHHGKSGLTKAVKESKISLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQF 153

Query: 114 FYDSYRW 120
               +  
Sbjct: 154 MRHLHYR 160


>gi|187469812|gb|AAI67080.1| Unknown (protein for IMAGE:8363520) [Rattus norvegicus]
          Length = 292

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 101 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 160

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 161 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 208

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G   +  L V      +      +           L D+     ++H    H    D 
Sbjct: 209 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 268

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 269 KNIANIMKTLAYR 281


>gi|293347578|ref|XP_001071982.2| PREDICTED: exoribonuclease 3 [Rattus norvegicus]
 gi|149035532|gb|EDL90213.1| similar to prion protein interacting protein 1, isoform CRA_a
           [Rattus norvegicus]
          Length = 337

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 253

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G   +  L V      +      +           L D+     ++H    H    D 
Sbjct: 254 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 314 KNIANIMKTLAYR 326


>gi|109730985|gb|AAI17541.1| Eri3 protein [Mus musculus]
          Length = 296

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 105 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 164

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 165 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 212

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G   +  L V      +      +           L D+     ++H    H    D 
Sbjct: 213 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 272

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 273 KNIANIMKTLAYR 285


>gi|94267095|ref|ZP_01290732.1| Exonuclease [delta proteobacterium MLMS-1]
 gi|94268501|ref|ZP_01291197.1| Exonuclease [delta proteobacterium MLMS-1]
 gi|93451582|gb|EAT02387.1| Exonuclease [delta proteobacterium MLMS-1]
 gi|93452187|gb|EAT02848.1| Exonuclease [delta proteobacterium MLMS-1]
          Length = 161

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 48/186 (25%), Gaps = 31/186 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +   +       V V  Q             P+  ++       I 
Sbjct: 1   MVNFAAIDFET--ANYRRESACAVGVVLV-EQGRIARRIYHLIRPPSSWFVF----THIH 53

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+  +   R      E    I    +      +  +N  FD        + +        
Sbjct: 54  GLGWEDVRRAP-SFGEIWPEIAAELA--GVEFLAAHNASFDRGVLNACCHAHGLAPPSLP 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +         + + R  +   P               KL D+     I   N H A +D 
Sbjct: 111 F------VCTVQLARQRWNIRPT--------------KLSDVCRRLDIAL-NHHQADSDA 149

Query: 182 YATLAL 187
            A   +
Sbjct: 150 EACARI 155


>gi|46447255|ref|YP_008620.1| hypothetical protein pc1621 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400896|emb|CAF24345.1| unknown protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 193

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 12/192 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPAD-DYLPDPEAVFITGI 63
           +  D E+ G D    R  + A   +D R  E+  + +    +P +     D  ++ I G 
Sbjct: 4   IFLDIESSGLDSFHHRALEIAFKVIDVRTGEERLTYQSIVKQPLEVWEKRDLASIEINGF 63

Query: 64  TPQKA---LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T +K      + VV++E  +  +         +    N  FD  +   I      + Y W
Sbjct: 64  TWEKLLLGQEEAVVKSEIVQIFNDLKIQRGRAVYICQNPAFDRGFFSQIVDVYTQEKYHW 123

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKA 179
            +   +       +    Y    +            +     +A   G+    + H+A  
Sbjct: 124 PYHWLDFASMYWALQFKFYTQKHE------HFPLEINLSKNTIAQHFGLPIESSPHNALN 177

Query: 180 DVYATLALVWLI 191
            V   +     +
Sbjct: 178 GVNHLILCYKTV 189


>gi|33859765|ref|NP_536717.2| ERI1 exoribonuclease 3 [Mus musculus]
 gi|81913994|sp|Q8C460|ERI3_MOUSE RecName: Full=ERI1 exoribonuclease 3; AltName: Full=Prion
           interactor 1; AltName: Full=Prion protein-interacting
           protein
 gi|26350187|dbj|BAC38733.1| unnamed protein product [Mus musculus]
 gi|74184336|dbj|BAE25703.1| unnamed protein product [Mus musculus]
 gi|109733321|gb|AAI16686.1| Exoribonuclease 3 [Mus musculus]
 gi|123121719|emb|CAM27529.1| prion protein interacting protein 1 [Mus musculus]
 gi|123261242|emb|CAM23618.1| prion protein interacting protein 1 [Mus musculus]
          Length = 337

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 253

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G   +  L V      +      +           L D+     ++H    H    D 
Sbjct: 254 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 314 KNIANIMKTLAYR 326


>gi|317057849|ref|YP_004106316.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
 gi|315450118|gb|ADU23682.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
          Length = 295

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 28/190 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G     D   Q + +  D     +      + +P        EA  +  ITP
Sbjct: 128 IIIDTETTGLSELDDELLQVSII--DDAGNVL---YNSYLRPLYHTS-WKEAECVNNITP 181

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +       +  E  +                          + I +   +D     +  G
Sbjct: 182 RMVAEAPTIYDEMPK-----------------INAIIKAAKKIIGFNTGFDENFLYFSGG 224

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE----HVNAHDAKADV 181
            S W   +V+  +  F+P   +W  + D      L   A     +       AH++ AD 
Sbjct: 225 IS-WMNKEVVDVMTMFAPIYGEWSEQYDDYKWQNLIKAADYYDYDWSSRPGEAHNSLADC 283

Query: 182 YATLALVWLI 191
           YATL +   I
Sbjct: 284 YATLYVYNKI 293


>gi|149910187|ref|ZP_01898833.1| Oligoribonuclease [Moritella sp. PE36]
 gi|149806773|gb|EDM66737.1| Oligoribonuclease [Moritella sp. PE36]
          Length = 188

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 33/125 (26%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           N+ V  D E  G D       + A +  D +   +    V         L   +    T 
Sbjct: 13  NNLVWIDLEMTGLDPEKCLIIEIATIVTDSELNILAEGPVLAIHQDKAELDKMDEWCTTH 72

Query: 63  ITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            T     ++ L   V E E   +   F           +  N+I  D  +          
Sbjct: 73  HTNSGLVKRVLASEVTEKEAVEQTLAFLHKWVPAGKSPLCGNSIGQDRRFLVKYMTELND 132

Query: 116 DSYRW 120
             +  
Sbjct: 133 YFHYR 137


>gi|497127|gb|AAA21572.1| RNase T [Vibrio parahaemolyticus]
          Length = 214

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 62/201 (30%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  R+D +      ST  F  +P +    + EA+   G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLEKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  + E E  + I++        S  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAISEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAYGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 181 AHSALYDTQKTAELFCGIVNK 201


>gi|66045076|ref|YP_234917.1| exonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|63255783|gb|AAY36879.1| Exonuclease [Pseudomonas syringae pv. syringae B728a]
          Length = 181

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 1   MTNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M  H+++ D E      G  VA     +     V++   +++  E  F +PA   L    
Sbjct: 1   MMPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHF 59

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +T I  Q ++           +  ++ S     I+G+                  + 
Sbjct: 60  CRELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARIVGW----------------ASWG 102

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
            Y         R   LD   +         ++           L       G++     H
Sbjct: 103 DYDRQQLEEEWRHHHLDSALSSMPHVNLKQRFAQARHLQKPIGLNSALQLAGMQFSGQQH 162

Query: 176 DAKADVYATLALV 188
            A  D   T  L+
Sbjct: 163 RALVDARNTARLL 175


>gi|296101815|ref|YP_003611961.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056274|gb|ADF61012.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 220

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 67/265 (25%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET           + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   VIDTETCDL---QGGIVEVASVDV-IDGKIV-NPMSHLVRP--DRPISPQAMAIHRITES 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E     +       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-EVIPHYY------GSPWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R ++          S      S KL         E ++ H A  D Y T A
Sbjct: 97  --ICTMKLARRLWPGIK-----YSNMALYKSRKLSVRTP----EGLHHHRALYDCYITAA 145

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
           L+  I        + +     +  L                  F   +     ++ +A  
Sbjct: 146 LLIDIMNTSGWTPDDMATITGRPALLT---------------TFTFGKYRGKAVSDIADK 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +          +   L  
Sbjct: 191 DPGYLRWLYNNLDKMSPELRLTLKH 215


>gi|162449255|ref|YP_001611622.1| exonuclease [Sorangium cellulosum 'So ce 56']
 gi|161159837|emb|CAN91142.1| predicted exonuclease [Sorangium cellulosum 'So ce 56']
          Length = 191

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 34/158 (21%), Gaps = 8/158 (5%)

Query: 5   FVIYDYETF----GRDVALD-RPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAV 58
           F++ D E      GR         +   V VD    E +     F        L      
Sbjct: 8   FLVIDLEATCDEEGRIPERIMEIIEIGAVLVDGATLEPVSELATFVRPVIRPRL-TEFCT 66

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +T IT            E    + +F          + +     +      +       
Sbjct: 67  KLTTITQADVDAAP-TFPEAIAALGRFVGQREALFCSWGDYDRKQFEIDAARWGVPLPLQ 125

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT 156
                       L    R   A + + +  P       
Sbjct: 126 GHMNIKKRFSAALGVTQRYGMASALERLGLPLHGTHHR 163


>gi|301604764|ref|XP_002932007.1| PREDICTED: ERI1 exoribonuclease 2 [Xenopus (Silurana) tropicalis]
          Length = 693

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 21/203 (10%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59
            +I D+E+     G+        +F  V ++    E        + +P +  +       
Sbjct: 38  LIIIDFESTCWKDGKHSTQ-EIIEFPAVLLNVANGEIESEFHT-YVQPQEHPILSEFCTE 95

Query: 60  ITGITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF-----Y 111
           +TGI   +        +  ++F+  I +         +          +    F     +
Sbjct: 96  LTGIKQLQVDNGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSAAEHKMCAFVTWSDW 155

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                           + D+L+    + A       + +R     +  LQDL +      
Sbjct: 156 DLGVCLLYECRRKQMKKPDILNSWIDLRATYK---LFYNRRPKGLNGALQDLGIEFS--- 209

Query: 172 VNAHDAKADVYATLALVWLIREK 194
              H    D   T  L W +   
Sbjct: 210 GREHSGLDDSRNTAKLAWRMIRD 232


>gi|149197758|ref|ZP_01874808.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
 gi|149139328|gb|EDM27731.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
          Length = 184

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 15/120 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
           TN+ V  D E  G +   D+  + A +  D +   I          ++       D  + 
Sbjct: 4   TNNLVWMDLEMTGLNPDNDKIIEIATLVTDSELNIIAKGPCLIIHQSDEVMNNMNDWCIK 63

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQF---FSVPNTCIIGYNNIRFDDYYSRNIF 110
                 +T    Q      V + E  R+   F   F       +  N+I  D  +     
Sbjct: 64  HHGESGLT----QAVKESTVSQEEACRQTRDFILEFCEKGRAPLCGNSIGQDRMFLTKHM 119


>gi|58337027|ref|YP_193612.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227903590|ref|ZP_04021395.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58254344|gb|AAV42581.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868477|gb|EEJ75898.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 177

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   +     A V V    + ++               D   + +  I
Sbjct: 2   NFIAMDFET--ANHYPESACSLALVMVRNN-KIVDRFYTV---INPQMPFDARNIQVHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE   +I          ++  +N RFD    R    R   +       
Sbjct: 56  TAEDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNSRFDTNVMRQSLARYNIEEP----- 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                          Y            +    + KL  ++ A  +E  + H+A +D  A
Sbjct: 108 --------------HYLVIDTLATSKLFEPELPNHKLDTVSDALNVELWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CAGIL 158


>gi|325114145|emb|CBZ49703.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 496

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 48/209 (22%), Gaps = 35/209 (16%)

Query: 9   DYETFGRDVALDRPAQFAG----------------VRVDRQWEKIESTEVFFCKPADDYL 52
           D ET G  +      Q                   V  D +        VF         
Sbjct: 257 DLETTGLCIQSCEITQIGCVPRLFRDGRWHYVNCPVLRDAEAHLWGEPHVFSAYIRIHSW 316

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
              +   +TGIT     + G+                       N++ +D          
Sbjct: 317 IPKKVRDLTGITKALLNKKGIPLETAL------LKWAGWAQKIANSLDYDVPIWFVAHSG 370

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW----------PSRDDGATSFKLQD 162
           + +D         ++R  L    R  +                   P  +    S  L  
Sbjct: 371 SSFDIPVLLRHETSTRTALKMFSRGCFFRHVGCEYTVDTLTLSRALPWPNVREQSHSLSL 430

Query: 163 LALANGI---EHVNAHDAKADVYATLALV 188
           L         +  + H+A  D  A   L+
Sbjct: 431 LYAQLTGRSRDRNDEHNAVGDSIALAELM 459


>gi|148652620|ref|YP_001279713.1| oligoribonuclease [Psychrobacter sp. PRwf-1]
 gi|148571704|gb|ABQ93763.1| Exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           PRwf-1]
          Length = 193

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 35/126 (27%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
               +  D E  G D   D   + A +  D     +    VF  K +D  L   D     
Sbjct: 15  KKGLIWIDLEMTGLDTMNDDIIEIATIVTDEDLNILAEGPVFAIKVSDQKLNAMDDWNTK 74

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +  R  V   +  +    F +         +  N+I  D  +      +  
Sbjct: 75  QHGQSGLIDRVRRSSVTLEQAEQETIAFLNKWVDEGKSPMCGNSICQDRRFLARQMPQLE 134

Query: 115 YDSYRW 120
              +  
Sbjct: 135 RFFHYR 140


>gi|77359452|ref|YP_339027.1| oligoribonuclease [Pseudoalteromonas haloplanktis TAC125]
 gi|123587965|sp|Q3IG97|ORN_PSEHT RecName: Full=Oligoribonuclease
 gi|76874363|emb|CAI85584.1| oligoribonuclease [Pseudoalteromonas haloplanktis TAC125]
          Length = 181

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 8/130 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            ++ +  D E  G +   D+  + A V  D     +          +++ L   D     
Sbjct: 5   KSNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAEGPTIAIHQSNELLDNMDEWCTT 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +       EA    +   F           +  N+I  D  +    + R  
Sbjct: 65  QHGKSGLTARCKASTYDEAYAVEQTIAFLKQWVPAGASPMCGNSIGQDRRFMNK-YMREL 123

Query: 115 YDSYRWSWDN 124
            D + +   +
Sbjct: 124 EDFFHYRNLD 133


>gi|50554073|ref|XP_504445.1| YALI0E26939p [Yarrowia lipolytica]
 gi|49650314|emb|CAG80046.1| YALI0E26939p [Yarrowia lipolytica]
          Length = 182

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 9/114 (7%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPEA 57
           M    V  D E  G D   D+  +   +  D   + I+      V  C            
Sbjct: 1   MEPPLVWIDCEMTGLDHKNDQIIEICCLLTDDNLQVIDPKGYEAVIHCPKEKLDAMSAWC 60

Query: 58  VFITGIT--PQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
           V   G +   QK +         E E    I +F       ++  N++  D  +
Sbjct: 61  VEHHGQSGLTQKCIESTKTMTEVEEELLAYIKRFVPRKGAGVLAGNSVHQDRVF 114


>gi|68250317|ref|YP_249429.1| oligoribonuclease [Haemophilus influenzae 86-028NP]
 gi|148825742|ref|YP_001290495.1| oligoribonuclease [Haemophilus influenzae PittEE]
 gi|81335262|sp|Q4QJM8|ORN_HAEI8 RecName: Full=Oligoribonuclease
 gi|166216261|sp|A5UBG1|ORN_HAEIE RecName: Full=Oligoribonuclease
 gi|68058516|gb|AAX88769.1| oligoribonuclease [Haemophilus influenzae 86-028NP]
 gi|148715902|gb|ABQ98112.1| oligoribonuclease [Haemophilus influenzae PittEE]
          Length = 182

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 19/133 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +          ++    K  D    
Sbjct: 5   KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                         ++     + E     +   F           I  N+I  D  +   
Sbjct: 63  ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118

Query: 109 IFYRNFYDSYRWS 121
                    +   
Sbjct: 119 YMPDLADYFHYRH 131


>gi|167034808|ref|YP_001670039.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
 gi|166861296|gb|ABY99703.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
          Length = 183

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 52/188 (27%), Gaps = 23/188 (12%)

Query: 6   VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D E T   G     +    +     V R+  +++  +  F +P       P    +T
Sbjct: 5   LVIDLEATTDEGGWPVTEMEIIEIGASLVTREGREVDHFQ-RFVRPRRRPQLTPFCRELT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYDSYRW 120
            I+            E    + ++       +  + +   +D       + ++  DS   
Sbjct: 64  HISQADVDSA-APFREVWANVERWLGHHRGQLQAWVSWGDYDRQQLHQEWQQHGLDSLLR 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +  + N +               +G                 LA  +       H A  D
Sbjct: 123 TLPHINLKQRFAKARHLQRPTGLNGA--------------LQLAGMHFC--GQQHRALED 166

Query: 181 VYATLALV 188
              T  L+
Sbjct: 167 ARNTARLL 174


>gi|146312061|ref|YP_001177135.1| exodeoxyribonuclease X [Enterobacter sp. 638]
 gi|145318937|gb|ABP61084.1| Exodeoxyribonuclease X [Enterobacter sp. 638]
          Length = 220

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 67/263 (25%), Gaps = 54/263 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET           + A V V    + + +      +P  D    P+A+ I  IT  
Sbjct: 4   VIDTETCDL---QGGIVEVASVDV-INGQIV-NPMSHLVRP--DRPISPQAMAIHRITES 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E         +   +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-EVIP------NYYGSTWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R ++          S      S KL         E ++ H A  D Y T A
Sbjct: 97  --ICTMKLARRLWPGIK-----YSNMALYKSRKLNVKTP----EGLHHHRALYDCYITAA 145

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
           L+  I        + +     +  L                  F   +     ++ VA  
Sbjct: 146 LLIDIMNNSGWTPDDMATITGRPALLT---------------TFTFGKYRGKAVSEVADR 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDL 268
            P Y   +          +   L
Sbjct: 191 DPGYLRWLYNNLDRMSPELRLTL 213


>gi|332845430|ref|XP_003315043.1| PREDICTED: ERI1 exoribonuclease 2 isoform 1 [Pan troglodytes]
          Length = 691

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +I+S    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+     N       +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|294629494|ref|ZP_06708054.1| oligoribonuclease [Streptomyces sp. e14]
 gi|292832827|gb|EFF91176.1| oligoribonuclease [Streptomyces sp. e14]
          Length = 202

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 56/206 (27%), Gaps = 45/206 (21%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  ++ D   + A +  D +   +        +P D  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60

Query: 60  ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
                 Q     G+             E +    + +    P    +  N++  D  +  
Sbjct: 61  ------QMHTASGLLAELPGGTTLKDAEEQVLAYVREHVKEPGKAPLCGNSVGTDRGF-- 112

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
                   D             D+  +      + P                    A  N
Sbjct: 113 -----LLRDMPVLEGYLHYRIVDVSSIKELARRWYPR-------------------AYFN 148

Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
             E    H A AD+  ++A +   RE
Sbjct: 149 SPEKNGNHRALADIRESIAELRYYRE 174


>gi|73977199|ref|XP_850849.1| PREDICTED: similar to prion protein interacting protein 1 isoform 2
           [Canis familiaris]
          Length = 335

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 144 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 203

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 204 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 251

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 252 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 311

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 312 KNIANIMKTLAYQ 324


>gi|19553671|ref|NP_601673.1| oligoribonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|62391312|ref|YP_226714.1| oligoribonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|23821913|sp|Q8NMU1|ORN_CORGL RecName: Full=Oligoribonuclease
 gi|21325244|dbj|BAB99866.1| Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326653|emb|CAF21135.1| Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium
           glutamicum ATCC 13032]
          Length = 219

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 10/119 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D+      + A +  D     +           ++ L   D     +
Sbjct: 17  DRLVWVDLEMTGLDLKRHVIVEVAALVTDANLNVLGEGVDLVVHATEEELAQMDDFVTNM 76

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112
               G+T ++     V   E    +           +   +  N+I  D  + R    R
Sbjct: 77  HESSGLT-EQIRESAVTLKEAEDAVLALIEKHCDPAHPAPLAGNSIATDRAFIREHMPR 134


>gi|269219723|ref|ZP_06163577.1| oligoribonuclease [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210965|gb|EEZ77305.1| oligoribonuclease [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 214

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 21/192 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE---- 56
           M N  V  D E  G D+ +D   + A V  D +   ++       +P+D  +        
Sbjct: 1   MNNPIVWIDCEMTGLDLNVDELVEVAVVITDSELNPVDEGIDVLIRPSDAAVEHMGDFVR 60

Query: 57  ----AVFI-----TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
               A  +      G+T ++A        +    I +         +G N++  D  +  
Sbjct: 61  QMHTASGLIEEWKNGLTLEEARE------QVLAYIRRHIPEAQKAPLGGNSVGTDKAFL- 113

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
              Y     ++        S    L        +     +  +       +   D     
Sbjct: 114 -EKYMPDVVAHLHYRLIDVSSLKELAKRWYPRTYFAAPEKTGNHRALGDIYDSIDELHYY 172

Query: 168 GIEHVNAHDAKA 179
               + A D   
Sbjct: 173 RDALMPAGDGLT 184


>gi|262374198|ref|ZP_06067474.1| oligoribonuclease [Acinetobacter junii SH205]
 gi|262310756|gb|EEY91844.1| oligoribonuclease [Acinetobacter junii SH205]
          Length = 184

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 11/131 (8%)

Query: 1   MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54
           M++      +  D E  G D   D+  + A +  D     +    V     +D  L   D
Sbjct: 1   MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDNLNILAEGPVLAVHQSDLILNAMD 60

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
                  G +   ++  R  +   +  ++  +F        +  +  N+I  D  +   +
Sbjct: 61  EWNTKQHGQSGLIERVRRSKLSAQDAEQQTLEFLKKWVNPKSSPMCGNSICQDRRFLHRL 120

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 121 MPELEQFFHYR 131


>gi|240170995|ref|ZP_04749654.1| oligoribonuclease [Mycobacterium kansasii ATCC 12478]
          Length = 215

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 12/156 (7%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---PDPEA 57
           M +  V  D E  G ++A D+  + A +  D     +           DD L    D  A
Sbjct: 1   MRDELVWIDCEMTGLNIASDKLIEIAVLVTDADLNILGDGVDVVIHADDDALSSMIDVVA 60

Query: 58  VFIT--GITPQKALRDGV----VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
              T  G+  ++     V     EA     I++    P T  +  N+I  D  +      
Sbjct: 61  EMHTRSGL-IEEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRSFI--ARD 117

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
               D++        S    L        +     +
Sbjct: 118 MPALDAFLHYRMIDVSSIKELCRRWYPRIYFGQPPK 153


>gi|145296472|ref|YP_001139293.1| oligoribonuclease [Corynebacterium glutamicum R]
 gi|166216072|sp|A4QGM5|ORN_CORGB RecName: Full=Oligoribonuclease
 gi|140846392|dbj|BAF55391.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 219

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 10/119 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D+      + A +  D     +           ++ L   D     +
Sbjct: 17  DRLVWVDLEMTGLDLKRHVIVEVAALVTDANLNVLGEGVDLVVHATEEELAQMDDFVTNM 76

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112
               G+T ++     V   E    +           +   +  N+I  D  + R    R
Sbjct: 77  HESSGLT-EQIRESAVTLKEAEDAVLALIEKHCDPAHPAPLAGNSIATDRAFIREQMPR 134


>gi|47214707|emb|CAG01060.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 228

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 56/193 (29%), Gaps = 33/193 (17%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V +D ET G     D   Q A V               +  P       P A  +TG  
Sbjct: 13  LVFFDLETTGLGSTCD-IIQLAAVSGGHSLN-------LYVVPR--RPLQPGAAKVTGFR 62

Query: 65  --------PQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
                    ++ +       E       F  +  +  I+G+N  RFD      +      
Sbjct: 63  VRRRRLYLHRQLVPTN-SLREVLVSFIAFLRMLHHPLIVGHNIRRFDGPLLGRVLDELDL 121

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
            +   S   G    D L + + +            R     +F+ + L          AH
Sbjct: 122 RTQFESSVTGW--VDTLSLAQEL-----------LRGHNLQNFRQETLVRELLGLDYRAH 168

Query: 176 DAKADVYATLALV 188
           DA  DV A  AL 
Sbjct: 169 DALQDVRALQALF 181


>gi|332536010|ref|ZP_08411688.1| oligoribonuclease [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034620|gb|EGI71185.1| oligoribonuclease [Pseudoalteromonas haloplanktis ANT/505]
          Length = 181

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 8/130 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            ++ +  D E  G +   D+  + A V  D     +          +D+ L   D     
Sbjct: 5   KSNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAEGPTIAIHQSDELLNGMDEWCTT 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +       E     +   F           +  N+I  D  +    + R  
Sbjct: 65  QHGKSGLTARCKASTFDEEYAVAQTLDFLKQWVPAGVSPMCGNSIGQDRRFMNK-YMREL 123

Query: 115 YDSYRWSWDN 124
            D + +   +
Sbjct: 124 EDFFHYRNLD 133


>gi|290477090|ref|YP_003470002.1| oligoribonuclease [Xenorhabdus bovienii SS-2004]
 gi|289176435|emb|CBJ83244.1| oligoribonuclease [Xenorhabdus bovienii SS-2004]
          Length = 181

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 35/129 (27%), Gaps = 15/129 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
           N+ +  D E  G +   DR  + A +  D +   +           +       D  +  
Sbjct: 6   NNLIWIDLEMTGLEPERDRIIEIATIVTDSELNILAEGPVIAVYQPDEQLALMDDWNVRT 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
             A  +     ++  +    +AE  +    F           I  N++  D  +      
Sbjct: 66  HTASGL----VERVKQSQFGDAEAEKATIAFLEQWVPAGKSPICGNSVGQDRRFLFRYMP 121

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 122 ELEKYFHYR 130


>gi|241662497|ref|YP_002980857.1| oligoribonuclease [Ralstonia pickettii 12D]
 gi|309781079|ref|ZP_07675817.1| oligoribonuclease [Ralstonia sp. 5_7_47FAA]
 gi|240864524|gb|ACS62185.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
          12D]
 gi|308920145|gb|EFP65804.1| oligoribonuclease [Ralstonia sp. 5_7_47FAA]
          Length = 215

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G     DR  + A V  D +   +  
Sbjct: 24 NNLIWLDMEMTGLSPENDRIIEVAVVVTDSELNILAE 60


>gi|113868398|ref|YP_726887.1| hypothetical protein H16_A2430 [Ralstonia eutropha H16]
 gi|113527174|emb|CAJ93519.1| hypothetical membrane associated protein,contains exonuclease
           domain [Ralstonia eutropha H16]
          Length = 247

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 52/205 (25%), Gaps = 32/205 (15%)

Query: 10  YETFGRDVALDRPAQFAGVRVD---RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
            ET G   A D P     + V+   R    +     ++            A    G+T +
Sbjct: 8   TETTGLTPA-DEPVSIGLLLVEVAPRAGTLLREITDYYGSQEPTVPIGEAATGTHGLTAE 66

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                   + +  R I       +  ++  +       +   +  +   D     W    
Sbjct: 67  MLRGR-RFDVDAIRAIVD-----DADVLVAHG----AEFHARMLGKVLPDIQHKRWR--- 113

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                   +R +           S+   A + KL  L     I       A  D  A   
Sbjct: 114 ------CSVRQVR---------WSQYFHAPNHKLDTLCEHLRIFRPRPQVALDDCLALSR 158

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQL 211
           L++       +     +     + +
Sbjct: 159 LLFQHMGAADQATPMGFLLAESDFV 183


>gi|53805219|ref|YP_113058.1| oligoribonuclease [Methylococcus capsulatus str. Bath]
 gi|59798004|sp|Q60BD8|ORN_METCA RecName: Full=Oligoribonuclease
 gi|53758980|gb|AAU93271.1| oligoribonuclease [Methylococcus capsulatus str. Bath]
          Length = 181

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D   D   + A +  D Q   +    V      +  L   D      
Sbjct: 6   QNLIWIDLEMTGLDPQNDAIIEIATIVTDGQLNVLAEGPVLAIHQPESVLDRMDDWNRKQ 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   ++  R  + EAE       F S     N   I  N+I  D  +      R   
Sbjct: 66  HGESGLTERVRRSTIGEAEAEHLTLGFVSEWVPPNESPICGNSICQDRRFLARCMPRLEA 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|257895239|ref|ZP_05674892.1| exonuclease [Enterococcus faecium Com12]
 gi|257897861|ref|ZP_05677514.1| exonuclease [Enterococcus faecium Com15]
 gi|293377229|ref|ZP_06623434.1| exonuclease [Enterococcus faecium PC4.1]
 gi|257831804|gb|EEV58225.1| exonuclease [Enterococcus faecium Com12]
 gi|257835773|gb|EEV60847.1| exonuclease [Enterococcus faecium Com15]
 gi|292644090|gb|EFF62195.1| exonuclease [Enterococcus faecium PC4.1]
          Length = 177

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET             A V V +  + ++           +       V I GI
Sbjct: 2   NFVAMDFETANHQPYSA--CSLALVMV-KNSQIVDEFYTL---IQPETPFFWRNVQIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E  + I  +F      ++  +N  FD                     
Sbjct: 56  HQEDVRNAPK-FPEVWQTIQPYFQKN--LLVVAHNAAFDTKVLA---------------- 96

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + +  Y                 + +L  +     I+  + HDA  D  A
Sbjct: 97  ---GCLDYYHLEQPNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHHHDALEDSRA 153

Query: 184 TLALVWLIREK 194
              ++    +K
Sbjct: 154 CAEILLYQEKK 164


>gi|289812558|ref|ZP_06543187.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 96

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 8/70 (11%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
          N ++  D ET G         +   +  D          +             EA+ I G
Sbjct: 24 NDYLFIDTETTGLG-DDAEIVEICII--DSHG-----FIMLNTLIKPTKPIPDEAIAIHG 75

Query: 63 ITPQKALRDG 72
          IT +      
Sbjct: 76 ITNEMVAFAP 85


>gi|330808406|ref|YP_004352868.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376514|gb|AEA67864.1| Conserved hypothetical protein; putative exonuclease [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 180

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 49/192 (25%), Gaps = 23/192 (11%)

Query: 2   TNHFVIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E T   G     +    +     V+R   +++  +  F +P    L  P  
Sbjct: 1   MPHWLVIDLEATTDEGGWPVTEMEIIEIGATLVNRDGREVDHFQ-RFVRPLRRPLLTPFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T IT            E      ++ +                 Y   +     +  
Sbjct: 60  RELTHITQANIDSA-APLTEVWPAFERWLT----------------PYQSKLESWVSWGD 102

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
           Y         +   L  +           ++           L       G++     H 
Sbjct: 103 YDRKQLLQEWQHQQLHSVLGQVPHMNLKQRFAKARRLERPLGLNGALQLAGLQFCGQQHR 162

Query: 177 AKADVYATLALV 188
           A  D   T  L+
Sbjct: 163 ALEDARNTARLL 174


>gi|322499704|emb|CBZ34778.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 509

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 60/226 (26%), Gaps = 29/226 (12%)

Query: 8   YDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +D E  G      D   +   +            ++ T     +P       P    +T 
Sbjct: 93  FDMEFTGPPVFTADGPTEDITELGLY-----SPLLDETFSCLVQPVCGRKQGPGVEELTH 147

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT     ++G+   E  ++   F   P    I  +          +          +W+ 
Sbjct: 148 ITDMMLEKEGIPFVEAWQQFLNFVQTPQPDEI--SGSEERILLLSHGGKLADVSLIKWTL 205

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPS--RDDGATSFKLQDLALANG-IEHVNAHDAKA 179
           +  +       V         D  +      D    S+KL DL         + AH A  
Sbjct: 206 EKFHMELPPSFVFGDTIHLIRDAHRRRPVTIDKHPPSWKLVDLVQWLHIPPTLPAHRAGN 265

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
           D   T              ++ LY    +    ++   + + P   
Sbjct: 266 DARMT--------------WDALYHTLLRYGDDEMAPREQLVPRFF 297


>gi|260913082|ref|ZP_05919564.1| ribonuclease T [Pasteurella dagmatis ATCC 43325]
 gi|260632669|gb|EEX50838.1| ribonuclease T [Pasteurella dagmatis ATCC 43325]
          Length = 221

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 52/198 (26%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A + V      +   +    F  +P +    +PE++   G
Sbjct: 28  VIIDVETAGFNAKTDALLELAAITVKMDDNGLLQPDQKCHFHIEPFEGANINPESLQFNG 87

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  V E      + +        +     II  +N  FD  +      R    
Sbjct: 88  IDIHNPLRGAVSETHAITELFRMVRKGQKDADCQRSIIVAHNAVFDQSFIMAAAERTGVK 147

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L   M                 DG                   AH 
Sbjct: 148 RNPFHPFGMFDTATLSGFMLGQTVLVKACQVAKIPFDGK-----------------QAHS 190

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 191 ALYDTERTTELFCYMVNH 208


>gi|209696189|ref|YP_002264119.1| oligoribonuclease [Aliivibrio salmonicida LFI1238]
 gi|208010142|emb|CAQ80467.1| oligoribonuclease [Aliivibrio salmonicida LFI1238]
          Length = 181

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFIT 61
            + +  D E  G D    +  + A +  D Q   +    V     ++  L    +    T
Sbjct: 6   QNLIWVDLEMTGLDPETHKIIEIASIVTDAQLNILAEGPVIAIHQSEGELAKMDDWCTNT 65

Query: 62  GITPQKALRDGVVEAEFSRRIHQ---FFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
                   R    E   +  I +   F           I  N+I  D  +      +   
Sbjct: 66  HTNSGLVARVNASEHTEASAIEETIAFLEKWVPKGVSPICGNSIGQDRRFLYKHMPKLEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|157870698|ref|XP_001683899.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126966|emb|CAJ05279.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 509

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 51/185 (27%), Gaps = 15/185 (8%)

Query: 8   YDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +D E  G      D   +   +            ++ T     +P       P    +T 
Sbjct: 93  FDMEFTGPPVFTADGPTEDITELGLY-----SPLLDETFSCLVRPVCGRKQGPGVEELTH 147

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT     R+G+   E  ++  +F   P    I  +          +          +W+ 
Sbjct: 148 ITDMMLEREGIPFVEAWQQFLKFVQTPQPDEI--SGSEERILLLSHGGKLADVSLIKWTL 205

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPS--RDDGATSFKLQDLALANG-IEHVNAHDAKA 179
           +  +       V         D  +      D    S+KL DL         + AH A  
Sbjct: 206 EKFHMELPPSFVFGDTIHLIRDAHRRRPVTIDKHPPSWKLADLVQWLHIPPTLPAHRAGN 265

Query: 180 DVYAT 184
           D   T
Sbjct: 266 DARMT 270


>gi|321478169|gb|EFX89127.1| hypothetical protein DAPPUDRAFT_41461 [Daphnia pulex]
          Length = 231

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 50/202 (24%), Gaps = 13/202 (6%)

Query: 1   MTNHFVIYDYETF------GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLP 53
           M +++V+ DYE          D       +F  V ++    +     +  +C+P  + L 
Sbjct: 25  MFDYYVVIDYEATCDENHNNFDKNNQEIIEFPAVLLNCHTGKVEAEFQS-YCRPVINPLL 83

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
               + +TGIT     +      +      ++        +G                  
Sbjct: 84  TKYCIKLTGITQNIVDKAP-SFHDVLASFEKWLQKKK---LGSEYSFAILTDGSKDVGHF 139

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-V 172
                  S  +          +R  +               A    L  +    G +   
Sbjct: 140 LKRQCVLSQIDIPEYCKYWINIRKSFTNFYQTNDLQYFARLANDTVLNIMIKEIGCKFQG 199

Query: 173 NAHDAKADVYATLALVWLIREK 194
             H    D      +   + + 
Sbjct: 200 KPHSGLDDARNIAYVAQCLLQD 221


>gi|242014597|ref|XP_002427973.1| oligoribonuclease, putative [Pediculus humanus corporis]
 gi|212512472|gb|EEB15235.1| oligoribonuclease, putative [Pediculus humanus corporis]
          Length = 196

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 49/179 (27%), Gaps = 14/179 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFIT 61
           + ++  D E  G +   D   + A +  +     +     F     D+ L    E   + 
Sbjct: 21  DRYIWIDLEMTGLNPETDTILEVACIITEPDLNPLNEGMHFVIHQNDNVLKSMNEWCLVH 80

Query: 62  G-----ITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFYR 112
                 I+  ++        +   ++  +         T  +  N++  D  + +   Y 
Sbjct: 81  HEKSGLIS--ESRASPHSLKDVEEKLFNYIKSNTFIDGTNYLAGNSVYMDLLFLKK--YM 136

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
               ++        S   +L      Y       +   R        +Q+L     I  
Sbjct: 137 PSIPTFLHYRLIDVSSLKVLCNHWYSYELKNCKKEVSHRALDDIKNSIQELKTYKNIAF 195


>gi|256832144|ref|YP_003160871.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
          DSM 20603]
 gi|256685675|gb|ACV08568.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
          DSM 20603]
          Length = 222

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 1  MTNH-----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
          MTN       V  D E  G D+  D   + A +  D +   ++       KP 
Sbjct: 1  MTNSAPTHPIVWIDCEMTGLDITQDALIEIAAIVTDSELNPLDEGIDLVIKPP 53


>gi|188991408|ref|YP_001903418.1| oligoribonuclease [Xanthomonas campestris pv. campestris str. B100]
 gi|126030541|pdb|2GBZ|A Chain A, The Crystal Structure Of Xc847 From Xanthomonas
           Campestris: A 3-5 Oligoribonuclease Of Dnaq Fold Family
           With A Novel Opposingly-Shifted Helix
 gi|167733168|emb|CAP51366.1| Oligoribonuclease [Xanthomonas campestris pv. campestris]
          Length = 194

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 13/128 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
           +  +  D E  G D   D   + A +  D Q   +              L   EA+    
Sbjct: 9   DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIA---HSLETLEAMDEWN 65

Query: 59  -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112
                 +   Q+ L   V  A+   +   F           +  N+I  D  +      R
Sbjct: 66  RNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSR 125

Query: 113 NFYDSYRW 120
                +  
Sbjct: 126 LERYFHYR 133


>gi|93006690|ref|YP_581127.1| ribonuclease T [Psychrobacter cryohalolentis K5]
 gi|92394368|gb|ABE75643.1| RNAse T [Psychrobacter cryohalolentis K5]
          Length = 246

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 60/203 (29%), Gaps = 27/203 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A + V    + +           +P +    +P A+  TG
Sbjct: 40  VVVDVETAGFNAQTDALLEIACIPVLLNEQGVFYPGEAFNAHIEPFEGANLEPSALAFTG 99

Query: 63  ITPQKALRDGVVEAE--FSRRIHQ------FFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P   LR  + E E    RRI +             C++  +N  FD  +      R  
Sbjct: 100 IDPNNPLRKAIAEDEKTALRRIFKGLKEVRRIEDCRQCVLIGHNAHFDLAFLNAAVLRTN 159

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
             S+    +        L  +           +                A     +  +A
Sbjct: 160 NKSHNPFHNFSVFDTVTLSALAFGQTVLARACK----------------AAGLDFDGNDA 203

Query: 175 HDAKADVYATLALVWLIREKKPK 197
           H A  D   T  L   I    P 
Sbjct: 204 HSALYDTQKTAELFCYILNNYPM 226


>gi|297278520|ref|XP_001093178.2| PREDICTED: ERI1 exoribonuclease 3 isoform 1 [Macaca mulatta]
          Length = 335

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 144 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 203

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 204 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 251

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 252 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 311

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 312 KNIANIMKTLAYR 324


>gi|296207750|ref|XP_002750780.1| PREDICTED: ERI1 exoribonuclease 3 [Callithrix jacchus]
          Length = 335

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 144 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 203

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 204 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 251

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 252 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 311

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 312 KNIANIMKTLAYR 324


>gi|291399043|ref|XP_002715197.1| PREDICTED: prion protein interacting protein [Oryctolagus
           cuniculus]
          Length = 337

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 253

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 314 KNIANIMKTLAYR 326


>gi|227893216|ref|ZP_04011021.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227864985|gb|EEJ72406.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 177

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   +     A V V    E ++             L D   + +  I
Sbjct: 2   NFIAMDFET--ANHYPESACSLALVMVRNN-EIVDRFYTV---INPQMLFDARNIQVHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE   +I          ++  +N RFD    R    R   +       
Sbjct: 56  TAEDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNARFDTNVMRQSLARYNIEEP----- 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                          Y            +    + KL  ++    +E  + H+A +D  A
Sbjct: 108 --------------HYLVIDTLATSKLFEPELPNHKLDTVSSTLDVELWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CAGIL 158


>gi|164420717|ref|NP_001106713.1| ERI1 exoribonuclease 3 isoform 1 [Bos taurus]
 gi|166989902|sp|A6QLH5|ERI3_BOVIN RecName: Full=ERI1 exoribonuclease 3; AltName: Full=Prion
           interactor 1; AltName: Full=Prion protein-interacting
           protein
 gi|151556386|gb|AAI47968.1| ERI3 protein [Bos taurus]
 gi|296488926|gb|DAA31039.1| ERI1 exoribonuclease 3 isoform 1 [Bos taurus]
          Length = 337

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 253

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 314 KNIANIMKTLAYR 326


>gi|149693719|ref|XP_001497227.1| PREDICTED: prion protein interacting protein [Equus caballus]
          Length = 337

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 253

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 314 KNIANIMKTLAYR 326


>gi|74136559|ref|NP_076971.1| ERI1 exoribonuclease 3 [Homo sapiens]
 gi|332259224|ref|XP_003278687.1| PREDICTED: ERI1 exoribonuclease 3 [Nomascus leucogenys]
 gi|332808745|ref|XP_513102.3| PREDICTED: ERI1 exoribonuclease 3 [Pan troglodytes]
 gi|172045564|sp|O43414|ERI3_HUMAN RecName: Full=ERI1 exoribonuclease 3; AltName: Full=Prion
           interactor 1; AltName: Full=Prion protein-interacting
           protein
 gi|55959494|emb|CAI12494.1| prion protein interacting protein [Homo sapiens]
 gi|56203068|emb|CAI23196.1| prion protein interacting protein [Homo sapiens]
 gi|158254566|dbj|BAF83256.1| unnamed protein product [Homo sapiens]
 gi|162319286|gb|AAI56813.1| Exoribonuclease 3 [synthetic construct]
 gi|261860912|dbj|BAI46978.1| exoribonuclease 3 [synthetic construct]
          Length = 337

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 253

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 254 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 314 KNIANIMKTLAYR 326


>gi|2852640|gb|AAC19158.1| unknown [Homo sapiens]
          Length = 397

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 206 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 265

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 266 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 313

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 314 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 373

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 374 KNIANIMKTLAYR 386


>gi|296158296|ref|ZP_06841128.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. Ch1-1]
 gi|295891632|gb|EFG71418.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. Ch1-1]
          Length = 207

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + V  D E  G +   DR  + A V  +   +++    V     +D+ L   D       
Sbjct: 19  NLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAGMDQWNQNTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +    +     V EA+ + +I  F SV   P    +  N+I  D  +           
Sbjct: 79  GRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFMARWMPDLERF 138

Query: 117 SYRW 120
            +  
Sbjct: 139 FHYR 142


>gi|229847336|ref|ZP_04467438.1| oligoribonuclease [Haemophilus influenzae 7P49H1]
 gi|229809761|gb|EEP45485.1| oligoribonuclease [Haemophilus influenzae 7P49H1]
          Length = 182

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 31/127 (24%), Gaps = 7/127 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G +   +R  + A +  D+    +    V      D  L   +     
Sbjct: 5   KQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDGLLNKMNDWCQK 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
                   ++     + E     +   F           I  N+I  D  +         
Sbjct: 65  THSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLA 124

Query: 115 YDSYRWS 121
              +   
Sbjct: 125 DYFHYRH 131


>gi|322412690|gb|EFY03598.1| DNA polymerase III subunit epsilon [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 195

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 28/195 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + ++ +D E F     +    Q + V+ D   ++++S + +      D         +TG
Sbjct: 5   DTYIAFDLE-FNTVNEISHLIQLSAVKYD-NHKEVDSFDTY---VYTDVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  K      VE E       F       +IGYN  + D          +  D Y+   
Sbjct: 60  ITSDKIAAAPKVE-EVITAFKDFVGELP--LIGYNAQKSDLPI-LAENGLDLRDQYQ--- 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  DL D      +   +GI          + +LQ +A   GI+    H++  D  
Sbjct: 113 ------IDLFDEAYDRRSADLNGIA---------NLRLQTVATFLGIK-GRGHNSLEDAR 156

Query: 183 ATLALVWLIREKKPK 197
            T  +     E    
Sbjct: 157 MTAGIYESFLETDTN 171


>gi|164663451|ref|XP_001732847.1| hypothetical protein MGL_0622 [Malassezia globosa CBS 7966]
 gi|159106750|gb|EDP45633.1| hypothetical protein MGL_0622 [Malassezia globosa CBS 7966]
          Length = 186

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 10/126 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFITGI 63
            V  D E  G D   DR  + A +  D Q   ++    +  +     L D  E    T  
Sbjct: 20  LVWIDCEMTGLDPNNDRLLEIACIVTDGQLRPVDEGVSYVIRTQPHVLQDMDEWCTTTHT 79

Query: 64  TP---QKALRDGVVE------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
                   L   +        A     +           +  +++  D  +  N      
Sbjct: 80  NTGLIDACLDAKMSHMHQDVRAAVLAYVLDRIPEARIACLAGSSVHADKAFLVNEMPELI 139

Query: 115 YDSYRW 120
              +  
Sbjct: 140 KHLHYR 145


>gi|332978247|gb|EGK14977.1| oligoribonuclease [Psychrobacter sp. 1501(2011)]
          Length = 193

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
               +  D E  G D   D   + A +  D     +    VF  K +D  L   D     
Sbjct: 15  KKGLIWIDLEMTGLDTMNDDIIEVATIVTDEDLNILAEGPVFAIKVSDQKLNGMDDWNTK 74

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +  R  V   +  +   +F +         +  N+I  D  +      +  
Sbjct: 75  QHGQSGLIDRVRRSTVTLEQAEKETIEFLNKWVDEGKSPMCGNSICQDRRFLARQMPQLE 134

Query: 115 YDSYRW 120
              +  
Sbjct: 135 RFFHYR 140


>gi|260582817|ref|ZP_05850603.1| oligoribonuclease [Haemophilus influenzae NT127]
 gi|260094143|gb|EEW78045.1| oligoribonuclease [Haemophilus influenzae NT127]
          Length = 182

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 19/133 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +          ++    K  D    
Sbjct: 5   KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                         ++     + E     +   F           I  N+I  D  +   
Sbjct: 63  ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118

Query: 109 IFYRNFYDSYRWS 121
                    +   
Sbjct: 119 YMPDLADYFHYRH 131


>gi|156975262|ref|YP_001446170.1| ribonuclease T [Vibrio harveyi ATCC BAA-1116]
 gi|269962098|ref|ZP_06176452.1| ribonuclease T [Vibrio harveyi 1DA3]
 gi|166200023|sp|A7MUL2|RNT_VIBHB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|156526856|gb|ABU71942.1| hypothetical protein VIBHAR_02991 [Vibrio harveyi ATCC BAA-1116]
 gi|269833182|gb|EEZ87287.1| ribonuclease T [Vibrio harveyi 1DA3]
          Length = 214

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 60/199 (30%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    + EA+   G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHIEPFEGANLEKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E E  + I++        +  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                     A     ++  AH
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------AAGMEFDNREAH 182

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  K
Sbjct: 183 SALYDTQQTAELFCGIVNK 201


>gi|88860421|ref|ZP_01135059.1| RNase T [Pseudoalteromonas tunicata D2]
 gi|88817619|gb|EAR27436.1| RNase T [Pseudoalteromonas tunicata D2]
          Length = 221

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +++D +    ++ T  F   P +    +  A+   G
Sbjct: 19  VVIDVETAGFNNQTDALLEIAVTTLKMDDEGVLSLDKTLHFHITPFEGANIEQAAIEFNG 78

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P  ALR  V E+   + I +F S           +I  +N  FD  +      R    
Sbjct: 79  IDPFSALRGAVEESIAFKEICKFVSKSQKDAGCQRSVIVAHNAAFDQGFVNAAVERCKIK 138

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +  +    +D   +                   G T      +A     ++  AH 
Sbjct: 139 ---RTPFHPFVSFDTTSLA--------------GLALGQTVLAKACIAAGIEFDNSQAHS 181

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  K
Sbjct: 182 AVYDTERTAELFCFIVNK 199


>gi|118094519|ref|XP_422418.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 265

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 74  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 133

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  S    +    D      
Sbjct: 134 IIQGMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPSVKSIFVTCGDWDLKVM 181

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 182 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSGIDDC 241

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 242 KNIANIMKTLAHR 254


>gi|120610573|ref|YP_970251.1| oligoribonuclease [Acidovorax citrulli AAC00-1]
 gi|166215745|sp|A1TND9|ORN_ACIAC RecName: Full=Oligoribonuclease
 gi|120589037|gb|ABM32477.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax citrulli
           AAC00-1]
          Length = 193

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
           +FV  D E  G D   DR  + A V    + E      VF    +D  L   +A      
Sbjct: 19  NFVWLDCEMTGLDPEKDRLLEIAVVVTGPELEPRVEGPVFAIHQSDALLDGMDAWNKGTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +   +K     V EAE  + I +F +         +  N+I  D  +      +    
Sbjct: 79  GRSGLIEKVRASTVTEAEAEQAILEFLARYVRKGVAPMCGNSIGQDRRFLVRYMPKLEAF 138

Query: 117 SYRW 120
            +  
Sbjct: 139 FHYR 142


>gi|74317857|ref|YP_315597.1| oligoribonuclease [Thiobacillus denitrificans ATCC 25259]
 gi|123611601|sp|Q3SHU1|ORN_THIDA RecName: Full=Oligoribonuclease
 gi|74057352|gb|AAZ97792.1| Exonuclease [Thiobacillus denitrificans ATCC 25259]
          Length = 182

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 21/131 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
           H +  D E  G     DR  + A V  D     +    V            P+AV     
Sbjct: 7   HLLWLDMEMTGLSPESDRIIELAIVVTDADLNTVAEGPVLVVH-------QPDAVMDAMD 59

Query: 60  -----ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNI 109
                  G +    +     + E++   ++ +F      P T  +  N+I  D  +    
Sbjct: 60  SWNRGTHGKSGLIDRVKASQLSESDAEAQMLEFVKQHVSPRTSPMCGNSICQDRRFMARH 119

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 120 MPELEAFFHYR 130


>gi|303229201|ref|ZP_07316002.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303230531|ref|ZP_07317286.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514814|gb|EFL56801.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516214|gb|EFL58155.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 209

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 59/187 (31%), Gaps = 28/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   +   +     A + V    +  +               DPE + I 
Sbjct: 1   MLDFVALDFET--ANKYKNSACSLAVITV-ENGQITKKAYSLIK--PPFMSFDPECIEIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P++ L +     +    I++  +     I+  +N +FD         R   D Y   
Sbjct: 56  GIEPKEVLHE-KTFDQLWPAIYE--NHLKGKIMIAHNAKFDMNVL-----RATLDYYNIP 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W       D    ++   A  PD +            KL  +A   G+E    H A  D 
Sbjct: 108 W----PELDYACTVKISRAVWPDLVN----------HKLNTMAAYLGVEF-KHHYALDDA 152

Query: 182 YATLALV 188
                + 
Sbjct: 153 ETCAKVA 159


>gi|262374958|ref|ZP_06068192.1| oligoribonuclease [Acinetobacter lwoffii SH145]
 gi|262309971|gb|EEY91100.1| oligoribonuclease [Acinetobacter lwoffii SH145]
          Length = 185

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 11/131 (8%)

Query: 1   MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54
           M++      +  D E  G D   D+  + A +  D     +    V         L   D
Sbjct: 1   MSSTADTRLIWIDLEMTGLDTDNDQIIEIATIVTDDNLNILAEGPVLAVHQPARLLNAMD 60

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
                  G +   ++  R  +   +  ++  +F        +  +  N+I  D  +   +
Sbjct: 61  EWNTRQHGQSGLIERVRRSKLTAQDAEQQTIEFLKKWVNPKSSPMCGNSICQDRRFLHRL 120

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 121 MPELEQYFHYR 131


>gi|91784777|ref|YP_559983.1| oligoribonuclease [Burkholderia xenovorans LB400]
 gi|122970228|sp|Q13VF8|ORN_BURXL RecName: Full=Oligoribonuclease
 gi|91688731|gb|ABE31931.1| Oligoribonuclease [Burkholderia xenovorans LB400]
          Length = 207

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + V  D E  G +   DR  + A V  +   +++    V     +D+ L   D       
Sbjct: 19  NLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAGMDQWNQNTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +    +     V EA+ + +I  F SV   P    +  N+I  D  +           
Sbjct: 79  GRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFMARWMPELERF 138

Query: 117 SYRW 120
            +  
Sbjct: 139 FHYR 142


>gi|70732181|ref|YP_261937.1| ribonuclease T [Pseudomonas fluorescens Pf-5]
 gi|123653314|sp|Q4K746|RNT_PSEF5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|68346480|gb|AAY94086.1| ribonuclease T [Pseudomonas fluorescens Pf-5]
          Length = 223

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 28/208 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A   + +D +         FF  +P +    +  A+  TG
Sbjct: 31  VVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 90

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          I+  +N  FD  +      R    
Sbjct: 91  IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 150

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L  +       +          DG                   AH 
Sbjct: 151 RNPFHPFSSFDTATLAGLAYGQTVLAKACQSADIDFDGR-----------------EAHS 193

Query: 177 AKADVYATLALVWLIREK--KPKLFEYL 202
           A+ D   T  L   I  +  +   ++  
Sbjct: 194 ARYDTEKTAELFCGIVNRWKQMGGWQDF 221


>gi|325119438|emb|CBZ54991.1| Oligoribonuclease, related [Neospora caninum Liverpool]
          Length = 342

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 12/118 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQW--EKIESTEVFFC--KPADDYLPDPEAVFI 60
            V  D E  G DV  D+  + A +  D Q     +    +     K  D    D      
Sbjct: 167 IVWIDCEMTGLDVERDQIIEIAVIVTDGQCRRRIVGPHLIIHASDKLLDGM--DEWCKKT 224

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIFYR 112
            G +       +     A+   +I  F S          +G N++  D  +      R
Sbjct: 225 HGNSGLTAACRQSTTTLADAEEKILDFVSRHVATTRVAPLGGNSVHVDRQFLTKQMPR 282


>gi|304396962|ref|ZP_07378842.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB]
 gi|308188276|ref|YP_003932407.1| oligoribonuclease [Pantoea vagans C9-1]
 gi|304355758|gb|EFM20125.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB]
 gi|308058786|gb|ADO10958.1| oligoribonuclease [Pantoea vagans C9-1]
          Length = 182

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 13/37 (35%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           + +  D E  G D   DR  + A +  D     +  
Sbjct: 7  QNLIWIDLEMTGLDPTHDRIIEIATLVTDANLNILAE 43


>gi|182419854|ref|ZP_02951094.1| exonuclease family protein [Clostridium butyricum 5521]
 gi|237666497|ref|ZP_04526482.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182376402|gb|EDT73984.1| exonuclease family protein [Clostridium butyricum 5521]
 gi|237657696|gb|EEP55251.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 304

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 19/189 (10%)

Query: 19  LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78
            +   +   ++VD+  + +      + KP    + +P+   IT I      + G+   E 
Sbjct: 36  ENEIIEIGAIKVDKYMKPLGEMRE-YIKPTIFPIINPKVTEITKIDSNILEKKGITFEEA 94

Query: 79  SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138
             ++   F   +                 +    +  +    S  +G    + LD    I
Sbjct: 95  INKLKDMFEDGD--------------VLCSWAKDDVAEIIINSNYHGYKDLNWLDSYLDI 140

Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
             ++   +         T+     + +         HDA  D + T+ +   I   +   
Sbjct: 141 QEYASKILAHKKVLGLKTALDELKIRVN----EERLHDALNDAFYTVEIFKRIYNSRIIK 196

Query: 199 FEYLYDYRN 207
              + D  N
Sbjct: 197 NHIVRDIYN 205


>gi|18310648|ref|NP_562582.1| hypothetical protein CPE1666 [Clostridium perfringens str. 13]
 gi|110800096|ref|YP_696353.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens ATCC 13124]
 gi|168211446|ref|ZP_02637071.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|168214501|ref|ZP_02640126.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens CPE str. F4969]
 gi|168216953|ref|ZP_02642578.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens NCTC 8239]
 gi|182626374|ref|ZP_02954128.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens D str. JGS1721]
 gi|18145329|dbj|BAB81372.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|110674743|gb|ABG83730.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens ATCC 13124]
 gi|170710592|gb|EDT22774.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170714024|gb|EDT26206.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens CPE str. F4969]
 gi|177908325|gb|EDT70873.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens D str. JGS1721]
 gi|182380871|gb|EDT78350.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens NCTC 8239]
          Length = 204

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 17/191 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFI 60
             + +D ET G         Q + + VD   +    I     F          +PEA  I
Sbjct: 2   KLLFFDTETTGVKP--GSICQLSYILVDTSTKPQKTIGKNIFFTV-----DEMEPEAERI 54

Query: 61  TGITPQKA--LRDGVVEAEF-SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            G + +K   L +G+   +  +  I+ F        I  +N++FD  + ++         
Sbjct: 55  HGFSLEKLYELSEGMYFEDLYADFINDFLE---ADFIIGHNVQFDIKFLKHELLGLGEFF 111

Query: 118 YRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +       + D+  ++R    +    ++   +    T  ++ + A        N HD
Sbjct: 112 EPNNVFCTMKYYKDICKILRPTGDYKNPKLEEVIKHLNITDSEISETANKYFQGSGNYHD 171

Query: 177 AKADVYATLAL 187
           A+ D  AT   
Sbjct: 172 ARFDTAATYLT 182


>gi|114564478|ref|YP_751992.1| oligoribonuclease [Shewanella frigidimarina NCIMB 400]
 gi|122298754|sp|Q07XW1|ORN_SHEFN RecName: Full=Oligoribonuclease
 gi|114335771|gb|ABI73153.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
           frigidimarina NCIMB 400]
          Length = 181

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G +  +DR  + A +  D++   I    V      D+ L   D      
Sbjct: 6   NNLIWVDLEMTGLEPDVDRVIEIATLVTDQELNIIAQGPVLAIYQTDEVLAGMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       E +   +   F +         +  N+I  D  +          
Sbjct: 66  HGESGLVDRVRASKCSEQDAIAQTIDFLAQYVPKGASPMCGNSIGQDRRFLNKYMLELEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 FFHYR 130


>gi|332083162|gb|EGI88393.1| exonuclease family protein [Shigella boydii 5216-82]
          Length = 181

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D  LDR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPELDRIIEIATLVTDANLNILAE 42


>gi|315055429|ref|XP_003177089.1| oligoribonuclease [Arthroderma gypseum CBS 118893]
 gi|311338935|gb|EFQ98137.1| oligoribonuclease [Arthroderma gypseum CBS 118893]
          Length = 188

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 9/128 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYL--PDPEAV 58
           ++  V  D E  G D A D   Q      D Q   +E            D L   +    
Sbjct: 7   SDPLVWIDCEMTGLDPANDHIMQVCCYITDAQLNLLEPKGFEVIVHLPQDILDRMNAWCT 66

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112
              G +      L       E +  +  +         T ++  N++  D  +     Y 
Sbjct: 67  ATHGRSGLTAAVLSATTTAEEAANGLLAYIKQHVPKQGTALLAGNSVHADRAFLAQPPYV 126

Query: 113 NFYDSYRW 120
              D   +
Sbjct: 127 QVLDWLHY 134


>gi|194434740|ref|ZP_03066992.1| oligoribonuclease [Shigella dysenteriae 1012]
 gi|194417021|gb|EDX33138.1| oligoribonuclease [Shigella dysenteriae 1012]
 gi|320180678|gb|EFW55605.1| 3'-to-5' oligoribonuclease (orn) [Shigella boydii ATCC 9905]
 gi|332083629|gb|EGI88847.1| exonuclease family protein [Shigella dysenteriae 155-74]
          Length = 181

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D  LDR  + A +  D     +  
Sbjct: 6  NNLIWIDLEMTGLDPELDRIIEIATLVTDANLNILAE 42


>gi|271968895|ref|YP_003343091.1| oligoribonuclease [Streptosporangium roseum DSM 43021]
 gi|270512070|gb|ACZ90348.1| putative oligoribonuclease; K01175 [Streptosporangium roseum DSM
          43021]
          Length = 200

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
          M++  V  D E  G D+  D   + A V  D +  +++       KP  + L
Sbjct: 1  MSDLLVWIDCEMTGLDLGRDALVEVACVVTDGELNQLDEGVDVVIKPPPEAL 52


>gi|170035826|ref|XP_001845768.1| three prime repair exonuclease 1 [Culex quinquefasciatus]
 gi|167878205|gb|EDS41588.1| three prime repair exonuclease 1 [Culex quinquefasciatus]
          Length = 325

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 19/173 (10%)

Query: 4   HFVIYDYETF---GRDVALDRPAQFAGV-------RVDRQWEKIESTEVFFCKPADDYLP 53
            FV +D ET    G         + + +          +  E                L 
Sbjct: 6   SFVFFDLETTDIPGLKTPK--ITELSLIACSKLHLLQTKHGEIPRVLHKQTFCLNPQRLI 63

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFY 111
            P+A  ITG+       +   +   ++ I  F       TC++ +N  RFD    +    
Sbjct: 64  HPKASEITGLYNDLLENESKFDENTAQLIVLFLERLQSPTCLVAHNGNRFDFPILKKE-- 121

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
               ++ +    +     D L + + +   S    +    ++      L+  A
Sbjct: 122 ---LEALKAHLPDATYCIDSLPLFQTLDQISTQQEKIAQENEKNELADLELTA 171


>gi|309972889|gb|ADO96090.1| Oligoribonuclease [Haemophilus influenzae R2846]
          Length = 182

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 29/133 (21%), Gaps = 19/133 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G +   +R  + A +  D+    +           +    K  D    
Sbjct: 5   KQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDELLNKMNDWC-- 62

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                         +      + E     +   F           I  N+I  D  +   
Sbjct: 63  ----QKTHSENGLIECVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118

Query: 109 IFYRNFYDSYRWS 121
                    +   
Sbjct: 119 YMPDLADYFHYRH 131


>gi|259486196|tpe|CBF83844.1| TPA: RNA exonuclease Rex2, putative (AFU_orthologue; AFUA_3G11820)
           [Aspergillus nidulans FGSC A4]
          Length = 194

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 9/128 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TE-VFFCKPADDYLPDPEAV 58
           T+  V  D E  G D   D   Q      D     +++   E V     +         +
Sbjct: 7   TDPLVWIDCEMTGLDPTTDHILQICCFITDADLNLLDATGFEAVIHVPQSALDSMSQWCI 66

Query: 59  FITGIT--PQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
              G T   Q+     V      A+    I ++   P T ++  N++  D  +     Y 
Sbjct: 67  DTHGRTGLTQRVQNSTVTPEAAAADLLAYIKRYIPKPRTALLAGNSVHADKAFLACGPYA 126

Query: 113 NFYDSYRW 120
              +   +
Sbjct: 127 AILEWLHY 134


>gi|238897699|ref|YP_002923378.1| oligoribonuclease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465456|gb|ACQ67230.1| oligoribonuclease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 185

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D   D   + A +  D     +    V     +D  +   +   + +
Sbjct: 10  QNLIWIDLEMTGLDPERDSIIEIATLVTDADLNILAEGPVIQIYQSDQQIALMNDWNICV 69

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
              T   ++        A+      +F           I  N++  D  +      +   
Sbjct: 70  HTKTGLIERVKNSLFSTADAESATLEFLRKWVPEGQSPICGNSVAQDRRFLYRYMPKLEA 129

Query: 116 DSYRW 120
             +  
Sbjct: 130 YFHYR 134


>gi|229916087|ref|YP_002884733.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium sp.
           AT1b]
 gi|229467516|gb|ACQ69288.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium sp.
           AT1b]
          Length = 188

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 52/205 (25%), Gaps = 30/205 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M +  +  D ET   +            +  +    + +           +   D   + 
Sbjct: 1   MNHTILALDVET--ANRDSRSICSVGWSILQNGDVVETDQ-----RLVNPEEDFDMGNIR 53

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI P           E    ++      +  ++  +N  FD    R    +     + 
Sbjct: 54  VHGIRPSDVWDAPA-LPEVLSSLYPILREVD--LVIAHNASFDMGALRKAIVKYDLFDF- 109

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     +    ++                 G  + KL  +A    +  ++ HDA  
Sbjct: 110 -------PTIEYGCTVKLSRKLY----------PGLPNHKLNTMAEHLNVPFIH-HDAAE 151

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D      L+  + +K          
Sbjct: 152 DARVCALLMRDMMQKTGITSPKELH 176


>gi|325293446|ref|YP_004279310.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
 gi|325061299|gb|ADY64990.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
          Length = 202

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 51/179 (28%), Gaps = 30/179 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                I D+ET   +             +    E +   E    +P  D    P  + + 
Sbjct: 1   MKTIAI-DFET--ANEERGSACSIGLAWI-EDGEIV-RVEERLIRPK-DMRFSPFNIAVH 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P           EF   + +F    +   +  +N  FD    R  F +         
Sbjct: 55  GIRPADVEDAP----EFPDVMEEFIDDFHGATMIAHNAAFDFSVMRASFDK--------- 101

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +         L  ++           WP       S KL  +A    +  V+ H+A  D
Sbjct: 102 YRQSYPDLSYLCSVKIARHV------WPQLA----SHKLNVIAHHLQLRFVH-HNAAED 149


>gi|295425904|ref|ZP_06818582.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064402|gb|EFG55332.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 177

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 58/200 (29%), Gaps = 28/200 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   +     A V V    E ++               D   + +  I
Sbjct: 2   NFIAMDFET--ANHYPESACSLALVMVRNN-EIVDRFYTV---INPQMPFDARNIEVHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           AE   +I          ++  +N RFD    R    R         + 
Sbjct: 56  TADDVRDAP-TMAEVWPKIKDL--YQPGMLVAAHNARFDTNVMRQSLAR---------YS 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + ++D +       PD              KL  ++ A  +   + H+A +D  A
Sbjct: 104 ISEPHYLVIDTLATSKLLEPDL----------PDHKLDTVSEALNVNLWHHHNALSDSEA 153

Query: 184 TLALVWLIREKKPKLFEYLY 203
              ++    ++         
Sbjct: 154 CAEILINQDKEFGDEPIKNL 173


>gi|224096223|ref|XP_002310581.1| predicted protein [Populus trichocarpa]
 gi|222853484|gb|EEE91031.1| predicted protein [Populus trichocarpa]
          Length = 231

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 29/192 (15%)

Query: 5   FVIYDYETFGRDVALD----RPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVF 59
            V++D ET            R  +F  + V  R+  +++S      +P D      ++  
Sbjct: 14  IVVFDLETT--VPNRAGQRFRVLEFGAITVCPRKLVELDSYSTLI-RPKDLSAVALKSGR 70

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
             GIT          E E + +I    +       G+N  RFD    +  F      +  
Sbjct: 71  CDGITRGAVSNAPAFE-EVADKIFSILN--GRIWAGHNIQRFDCVRIKEAFAEIGKPAPV 127

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D L V+                   A + K+  LA   G+     H +  
Sbjct: 128 -----PAGMIDSLGVL------------TERFGRRAGNMKMATLAAYFGLG-KQKHRSLD 169

Query: 180 DVYATLALVWLI 191
           DV   L ++   
Sbjct: 170 DVRMNLEVLKHC 181


>gi|146284105|ref|YP_001174258.1| oligoribonuclease [Pseudomonas stutzeri A1501]
 gi|166216582|sp|A4VR15|ORN_PSEU5 RecName: Full=Oligoribonuclease
 gi|145572310|gb|ABP81416.1| oligoribonuclease [Pseudomonas stutzeri A1501]
 gi|327482422|gb|AEA85732.1| oligoribonuclease [Pseudomonas stutzeri DSM 4166]
          Length = 180

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D Q   +    V     +D+ L   D     
Sbjct: 4   PQNLIWIDLEMTGLDPDNDVIIEMATIVTDSQLNVLAEGPVIAVHQSDEVLARMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  AE  R   +F           I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESRISTAEAERLTLEFLEQWVPKGKSPICGNSICQDRRFLYRQMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 AYFHYR 129


>gi|167035943|ref|YP_001671174.1| oligoribonuclease [Pseudomonas putida GB-1]
 gi|166862431|gb|ABZ00839.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           GB-1]
          Length = 180

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 35/126 (27%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +DD L   D     
Sbjct: 4   PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDDVLARMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +   F           I  N+I  D  +         
Sbjct: 64  THGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRNLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|110835017|ref|YP_693876.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2]
 gi|110648128|emb|CAL17604.1| nuclease, putative [Alcanivorax borkumensis SK2]
          Length = 173

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 57/188 (30%), Gaps = 20/188 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G D         A V + ++   + S++    K A       +++ I  + P
Sbjct: 2   VAIDCETTGLDSRTAELVSIAAVVI-KEGRVL-SSQSLNVKLAAPDSLREDSICIHRLRP 59

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                 G    E    +       N  ++G+         +R +     +D         
Sbjct: 60  VDLEG-GASIREALEALLALID--NRPLVGWCVAFDVAMINRYLRPLMGFDLPN------ 110

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                  D +     +      W  + D     +   +A A  +  +  H A+ D   + 
Sbjct: 111 -------DTLELSALYQRKMRYW--QPDITPDLRFDAMASALQVPVIERHTARGDAVTSA 161

Query: 186 ALVWLIRE 193
            +   +++
Sbjct: 162 LMYLQLQK 169


>gi|330502360|ref|YP_004379229.1| ribonuclease T [Pseudomonas mendocina NK-01]
 gi|328916646|gb|AEB57477.1| ribonuclease T [Pseudomonas mendocina NK-01]
          Length = 224

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 65/207 (31%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A   + +D       + T  F  +P +    +  A+  TG
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTIAMDESGFLYPDHTHFFRIEPFEGANIEQAALEFTG 91

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     E  + + +          I+  +N  FD  +      R    
Sbjct: 92  IKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAAVARCGIK 151

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GIE     A
Sbjct: 152 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIEFDGKEA 192

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 193 HSARYDTEKTAELFCGIVNRWKEMGGW 219


>gi|213029040|ref|ZP_03343487.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 139

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 25/99 (25%), Gaps = 13/99 (13%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4   IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
                  +E +            +   + +N        
Sbjct: 57  MVADKPWIE-DVIP-----LYYGSEWYVAHNASFDRRVL 89


>gi|145641023|ref|ZP_01796604.1| oligoribonuclease [Haemophilus influenzae R3021]
 gi|145274184|gb|EDK14049.1| oligoribonuclease [Haemophilus influenzae 22.4-21]
          Length = 115

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
            + +  D E  G D   +R  + A +  D+    +  
Sbjct: 5  KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAE 42


>gi|325275194|ref|ZP_08141161.1| ribonuclease T [Pseudomonas sp. TJI-51]
 gi|324099681|gb|EGB97560.1| ribonuclease T [Pseudomonas sp. TJI-51]
          Length = 224

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 33/218 (15%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVF-FCKPADDYL 52
           M   F     V+ D ET G + A D   + A V +  D +         F   +P +   
Sbjct: 22  MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGAN 81

Query: 53  PDPEAVFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +  A+  TGI        A+ +     +  R + +          I+  +N  FD  + 
Sbjct: 82  IEAAALEFTGIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFL 141

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                RN      +   +      L  +       +          DG            
Sbjct: 142 NAAVARNDVKRNPFHPFSSFDTATLAGLAYGQTVLARACQSADIDFDGR----------- 190

Query: 167 NGIEHVNAHDAKADVYATLALVWLIREK--KPKLFEYL 202
                  AH A+ D   T  L   I  +      +   
Sbjct: 191 ------EAHSARYDTEKTAELFCGIVNRWKDLGGWRDF 222


>gi|69245046|ref|ZP_00603204.1| Exonuclease [Enterococcus faecium DO]
 gi|314947594|ref|ZP_07851004.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0082]
 gi|68196047|gb|EAN10479.1| Exonuclease [Enterococcus faecium DO]
 gi|313645987|gb|EFS10567.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0082]
          Length = 201

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET             A V V +  + ++           +       V I GI
Sbjct: 26  NFVAMDFETANHQPYSA--CSLALVMV-KNSQIVDEFYTL---IQPETPFFWRNVQIHGI 79

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E  + I  +F      ++  +N  FD                     
Sbjct: 80  HQEDVRNAPK-FPEVWQTIQPYFQKN--RLVVAHNAAFDTKVLA---------------- 120

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + +  Y                 + +L  +     I+  + HDA  D  A
Sbjct: 121 ---GCLDYYHLEQPNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHHHDALEDSRA 177

Query: 184 TLALVWLIREK 194
              ++    +K
Sbjct: 178 CAEILLYQEKK 188


>gi|297160318|gb|ADI10030.1| oligoribonuclease [Streptomyces bingchenggensis BCW-1]
          Length = 202

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 56/206 (27%), Gaps = 45/206 (21%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  ++ D   + A +  D +   +        +P    L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVVRPPAKALTTMPEVVR 60

Query: 60  -IT-----------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
            +            G T + A R      +    I +         +  N++  D  +  
Sbjct: 61  EMHTASGLLAELDGGTTLEDAQR------QVLAYIREHVPEAGKAPLCGNSVSTDRGF-- 112

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
                   D             D+  +      +                      A  N
Sbjct: 113 -----LLRDMPELESYLHYRIVDVSSIKELARRWYAR-------------------AYFN 148

Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
             +    H A AD++ ++A +   RE
Sbjct: 149 SPKKNGNHRALADIHESIAELRYYRE 174


>gi|241763009|ref|ZP_04761071.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241367961|gb|EER62180.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 179

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 57/197 (28%), Gaps = 28/197 (14%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M  H++  D ET G               VD   +   +  V       + +  PEA+ +
Sbjct: 1   MREHYISVDVETSGPIPGEFSMLSLGASVVDDDGK---TFHVQIKPLNRNAV--PEALAV 55

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           TG++ +     G   A        +             +G N   FD  +    F R   
Sbjct: 56  TGLSLETLECHGTEPAIAMENFASWLEGVRPNGIKPVFVGLNAP-FDWSFVNYYFVR--- 111

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
             +  S   G +  D+  +          G  W        + +L         +    H
Sbjct: 112 --FCGSNPFGYTALDIKAM-----YMGATGCTWSQTTSSQMAKRLL-------PKRKGTH 157

Query: 176 DAKADVYATLALVWLIR 192
           +A  D      L  L+R
Sbjct: 158 NALDDALYQAELFRLVR 174


>gi|28174986|gb|AAH21405.2| Eri3 protein [Mus musculus]
          Length = 264

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 73  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 132

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 133 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 180

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G   +  L V      +      +           L D+     ++H    H    D 
Sbjct: 181 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 240

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 241 KNIANIMKTLAYR 253


>gi|332534821|ref|ZP_08410645.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035733|gb|EGI72220.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 207

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 20/188 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +   +++ D E  G D         A V +D Q  K+  ++        D     ++   
Sbjct: 21  LQQRYLVIDLELTGLDAKQHEIVSVAWVIIDNQCIKMSKSQHL---INKDVKSLAQSPVF 77

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI+   A+  G+       ++   FS    CI+ ++N   D  + +             
Sbjct: 78  HGISDD-AIAKGLSLNSILMQLSNHFSD---CILVFHNAMLDWVFLKIALKNANITI--- 130

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L + +         I+            L        +   + H A  D
Sbjct: 131 ---RPKLILDTLHIEQKRLLHHSTEIK-------QDDLTLNACRTRYELPSYHCHHALTD 180

Query: 181 VYATLALV 188
             AT  L+
Sbjct: 181 AQATAELL 188


>gi|321470748|gb|EFX81723.1| hypothetical protein DAPPUDRAFT_92597 [Daphnia pulex]
          Length = 185

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N  V  D E  G D   D   + A +  D+    +           D  L          
Sbjct: 10  NRIVWMDLEMTGLDETKDYILEAACLITDQDLNIVAEGPNIIINQPDSILDGMGEWCKKT 69

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   +      +   E   ++  F      P  C +  N+I  D  +      +   
Sbjct: 70  HGESGLTEACRNSNISVEEAQEQLVDFIGRYTNPGECPLAGNSIGEDKRFLYKYMPKLIN 129

Query: 116 DSYRW 120
             +  
Sbjct: 130 HLHYR 134


>gi|326318064|ref|YP_004235736.1| exonuclease RNase T and DNA polymerase III [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374900|gb|ADX47169.1| Exonuclease RNase T and DNA polymerase III [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 193

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
           +FV  D E  G D   DR  + A V    + E      VF    +D  L   +A      
Sbjct: 19  NFVWLDCEMTGLDPEKDRLLEIAVVVTGPELEPRVEGPVFAIHQSDALLDGMDAWNKGTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +   +K     V EAE  + I +F +         +  N+I  D  +      +    
Sbjct: 79  GRSGLIEKVRASTVTEAEAEQAILEFLARYVRKGVAPMCGNSIGQDRRFLVRYMPKLEAF 138

Query: 117 SYRW 120
            +  
Sbjct: 139 FHYR 142


>gi|33593655|ref|NP_881299.1| oligoribonuclease [Bordetella pertussis Tohama I]
 gi|33596303|ref|NP_883946.1| oligoribonuclease [Bordetella parapertussis 12822]
 gi|33602411|ref|NP_889971.1| oligoribonuclease [Bordetella bronchiseptica RB50]
 gi|41017436|sp|Q7VVH7|ORN_BORPE RecName: Full=Oligoribonuclease
 gi|41017438|sp|Q7W9T4|ORN_BORPA RecName: Full=Oligoribonuclease
 gi|41017439|sp|Q7WGX3|ORN_BORBR RecName: Full=Oligoribonuclease
 gi|33563728|emb|CAE42963.1| oligoribonuclease [Bordetella pertussis Tohama I]
 gi|33566072|emb|CAE36971.1| oligoribonuclease [Bordetella parapertussis]
 gi|33576850|emb|CAE33930.1| oligoribonuclease [Bordetella bronchiseptica RB50]
 gi|332383059|gb|AEE67906.1| oligoribonuclease [Bordetella pertussis CS]
          Length = 181

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 13/128 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
           N  V  D E  G D   +R  + A V  +     +    V      D  L   +A+    
Sbjct: 6   NRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPVLVVHQPDSLL---DAMDNWN 62

Query: 59  -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112
               G +   +K     + EA+  + + +F +         +  N I  D  +       
Sbjct: 63  KSTHGKSGLIEKVKASTLGEAQAEQILLEFLAEHVPAGKSPLCGNTISQDRRFMYAYMPN 122

Query: 113 NFYDSYRW 120
                +  
Sbjct: 123 LERFFHYR 130


>gi|262184889|ref|ZP_06044310.1| oligoribonuclease [Corynebacterium aurimucosum ATCC 700975]
          Length = 214

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 8/118 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D       + A V  D +   ++          ++ L   D     +
Sbjct: 13  DRLVWIDLEMTGLDPKRHVIVEVAAVVTDAELNILDEGIDIVVHATEEELAQMDDFVTEM 72

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112
              +   ++     +  AE    + +         +   +  N+I  D  + R    R
Sbjct: 73  HAKSGLDKEIRESAITIAEAEEAVLKLVEKHCDANHPAPLAGNSIATDRTFIREYMPR 130


>gi|254384702|ref|ZP_05000040.1| oligoribonuclease [Streptomyces sp. Mg1]
 gi|194343585|gb|EDX24551.1| oligoribonuclease [Streptomyces sp. Mg1]
          Length = 200

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 33/200 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD---DYLPD-PE 56
           M +  V  D E  G  +  D   + A +  D +   +        +P D   + +PD   
Sbjct: 1   MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDTALETMPDVVR 60

Query: 57  AVFI-TGITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           A+   +G+  + A    +   EA+    + +    P    +  N++  D  +        
Sbjct: 61  AMHTASGLLDELAGGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGF-------L 113

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D             D+  V      + P                    A  N      
Sbjct: 114 LRDMAALEGYLHYRIVDVSSVKELARRWYPR-------------------AYFNSPPKNG 154

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A AD+  ++A +   RE
Sbjct: 155 NHRALADIKESIAELRYYRE 174


>gi|66822265|ref|XP_644487.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
 gi|66822817|ref|XP_644763.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
 gi|122057700|sp|Q556Y2|ORN_DICDI RecName: Full=Probable oligoribonuclease; AltName: Full=RNA
           exonuclease 2 homolog
 gi|60472610|gb|EAL70561.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
 gi|60472946|gb|EAL70895.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
          Length = 190

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 19/122 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--------STEVFFCKPADDYLP 53
           +   V  D E  G D++ D   + A V  D +   IE         ++       D  + 
Sbjct: 16  SKRMVWVDLEMTGLDISKDVILEMAIVITDAELNVIEKGPNLVIHRSDEVLKNMNDWCIE 75

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                   G +   +      +   E  + + +F         C +  N +  D  +   
Sbjct: 76  H------HGKSGLTEDVRNSKISLEEAEKIMLEFVRKHTDKGICPLAGNTVHEDRRFLLK 129

Query: 109 IF 110
             
Sbjct: 130 EM 131


>gi|283458223|ref|YP_003362841.1| oligoribonuclease [Rothia mucilaginosa DY-18]
 gi|283134256|dbj|BAI65021.1| oligoribonuclease [Rothia mucilaginosa DY-18]
          Length = 228

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 31/128 (24%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD------------ 49
           +   V  D E  G DV  D   +   +  D     + S   F  KP D            
Sbjct: 5   SERIVWIDCEMTGLDVENDALVEVGVLVTDADLNILGSGVEFVIKPGDESPAGALENMND 64

Query: 50  ---------DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100
                      LPD E     G++   A        +  R I ++  V     +G N++ 
Sbjct: 65  FVRSMHEASGLLPDIE----HGVSMDYAQE------QVLRYIKKYVPVAGKAQLGGNSVG 114

Query: 101 FDDYYSRN 108
            D  +   
Sbjct: 115 MDKRFLER 122


>gi|255326016|ref|ZP_05367104.1| oligoribonuclease [Rothia mucilaginosa ATCC 25296]
 gi|255296907|gb|EET76236.1| oligoribonuclease [Rothia mucilaginosa ATCC 25296]
          Length = 228

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 31/128 (24%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD------------ 49
           +   V  D E  G DV  D   +   +  D     + S   F  KP D            
Sbjct: 5   SERIVWIDCEMTGLDVENDALVEVGVLVTDADLNILGSGVEFVIKPGDESPAGALENMND 64

Query: 50  ---------DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100
                      LPD E     G++   A        +  R I ++  V     +G N++ 
Sbjct: 65  FVRSMHEASGLLPDIE----HGVSMDYAQE------QVLRYIKKYVPVAGKAQLGGNSVG 114

Query: 101 FDDYYSRN 108
            D  +   
Sbjct: 115 MDKRFLER 122


>gi|227513634|ref|ZP_03943683.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577]
 gi|227083150|gb|EEI18462.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577]
          Length = 177

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 54/200 (27%), Gaps = 28/200 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET   +         A V V         T  F+     +       + + GI
Sbjct: 2   NFAAMDFET--ANAKRASACSLALVIVRNNQV----THEFYSLINPETDFSWRNINVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q          E    I   F+     ++  +N  FD+   +    R           
Sbjct: 56  HKQDVANAP-TFPELWDHIAPLFTANK--LVVAHNASFDNSVLKRTLERY---------- 102

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    D++   +                 + KL  +     IE  + H+A  D  A
Sbjct: 103 ---------DLLLPHFLTLDTLKTSKQFYPQMVNHKLNTVCDELHIELEHHHNALDDSVA 153

Query: 184 TLALVWLIREKKPKLFEYLY 203
              ++   +++        +
Sbjct: 154 CANILLTQQQQFGNSVLRNF 173


>gi|85706653|ref|ZP_01037745.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius
          sp. 217]
 gi|85668711|gb|EAQ23580.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius
          sp. 217]
          Length = 193

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 8/98 (8%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                 D E  G         +   V +D          +   +   +    P    I 
Sbjct: 1  MKRMWAVDVEGNGATPP--EIIELGIVEMD-GLRLTGR--IKHWQFRPELEITPIVSRIH 55

Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI 99
          GIT +          +    I  +       I+G+N  
Sbjct: 56 GITNEDVADAP-PFDDVVDDILLWLE--GAPIVGHNVR 90


>gi|300741385|ref|ZP_07071406.1| oligoribonuclease [Rothia dentocariosa M567]
 gi|300380570|gb|EFJ77132.1| oligoribonuclease [Rothia dentocariosa M567]
          Length = 211

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 52/211 (24%), Gaps = 53/211 (25%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
           +   V  D E  G D+  D   +   +  D     +        KP         A+   
Sbjct: 5   SERIVWIDCEMTGLDLTQDALIEIGVLVTDSDLNILGEGVELVIKP--GSEAPAGALENM 62

Query: 61  ------------------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
                              G++  +A           + + ++  V     +G N++  D
Sbjct: 63  NSYVRNMHESSGLLEDLEHGVSMHEAQEA------VLKYVKKYVPVAGKAQLGGNSVGMD 116

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
             +                        D+ D+M+ ++    D                  
Sbjct: 117 KRFLER---------------------DMPDLMKHLHYRVIDVSTIKELAARW-----YP 150

Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIRE 193
            A  N       H A  D+  ++  +   R 
Sbjct: 151 AARHNAPVKTGNHRALGDIKDSIDELKYYRR 181


>gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 308

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 29/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++  D+ET   +     P     V V +  E +E       KP +     P  + I GI 
Sbjct: 3   YIAIDFET--ANEKRSSPCSIGIVVV-KNSEVVEKIHYLI-KPKEMRFM-PINIGIHGIR 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P     +     E  +RI  +F       +  +N  FD    R        +   + +  
Sbjct: 58  PGMVENEPE-FDEIWKRIKGYFDNG---FVIAHNASFDISVLRRTMELYNIEPVSFKY-- 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +  M+    F P               KL  +    G E  + HDA AD  A 
Sbjct: 112 -------ICTMKLSKNFYPQIENS----------KLNTVNRFLGYEFDH-HDALADALAC 153

Query: 185 LALV 188
             ++
Sbjct: 154 SNIL 157


>gi|149409288|ref|XP_001508438.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 683

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 63/197 (31%), Gaps = 14/197 (7%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +IES    + +P +  +     + +
Sbjct: 38  LIVIDFESTCWNDGKHHYSQEIIEFPAVLLNTSTGEIESEFQCYVQPQEHPILSEFCIEL 97

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCII--GYNNIRFDDYYSRNIFYRNF 114
           TGI   +   +GV      ++F + I                N    +      + + ++
Sbjct: 98  TGIKQAQV-DEGVPLKICLSQFCKWIQMIQQKKKIIFAPGISNPATSEVKSCAFVTWSDW 156

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                  ++    +    +++ +          +  R     S  LQDL L         
Sbjct: 157 DLGVCLEYECKRKQLRKPEILNSWIDLRATYKLFYMRKPKGLSGALQDLGLKFS---GQE 213

Query: 175 HDAKADVYATLALVWLI 191
           H    D   T  L W +
Sbjct: 214 HSGLDDSRNTAHLAWRM 230


>gi|157103173|ref|XP_001647854.1| three prime repair exonuclease 1, putative [Aedes aegypti]
 gi|108884686|gb|EAT48911.1| three prime repair exonuclease 1, putative [Aedes aegypti]
          Length = 320

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 12/117 (10%)

Query: 4   HFVIYDYETFGR-DVALDRPAQFAGV------RVDRQWEKIESTE--VFFCKPADDYLPD 54
            FV +D ET     +   +  + + +       +D +  ++        FC      +  
Sbjct: 7   SFVFFDLETTDLIGIKTPKITEISLIACSRKHLLDTKRGELPRVLHKQTFC-LNPQRMIH 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNI 109
           P A   TG+       +   +   ++ I  F       TC++ +N  RFD    +  
Sbjct: 66  PRASETTGLYNDLLEDESKFDENTAQLIVLFLRRLQAPTCLVAHNGNRFDFVILKKE 122


>gi|257069110|ref|YP_003155365.1| N-acyl-D-glucosamine 2-epimerase [Brachybacterium faecium DSM 4810]
 gi|256559928|gb|ACU85775.1| N-acyl-D-glucosamine 2-epimerase [Brachybacterium faecium DSM 4810]
          Length = 634

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 9/114 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  +  D E  G D   D   + A +  D     +        KP  + L   DP  V +
Sbjct: 11  DRIIWVDCEMTGLDKQRDALVEIAVLVTDADLNILGDGVDVVIKPPAEALEGMDPFVVNM 70

Query: 61  TGIT--PQKALRDGVVEAEF----SRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
             ++   ++    G+   E        + Q+   P    +  N++  D  +   
Sbjct: 71  HTVSGLIEEL-DGGMTLQEAQARCLAYVQQYCPEPGKAPLAGNSVGTDRVFLDR 123


>gi|89075319|ref|ZP_01161741.1| oligoribonuclease [Photobacterium sp. SKA34]
 gi|90581256|ref|ZP_01237053.1| oligoribonuclease [Vibrio angustum S14]
 gi|89048868|gb|EAR54437.1| oligoribonuclease [Photobacterium sp. SKA34]
 gi|90437495|gb|EAS62689.1| oligoribonuclease [Vibrio angustum S14]
          Length = 181

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 11/127 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D    +  + A +  D Q   +    V      +  L   D      
Sbjct: 6   KNLIWIDLEMTGLDPETHKIIEIATIVTDPQLNILAEGPVLAIHQPEAELDKMDDWCTNT 65

Query: 61  TGITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
              T     ++  +  V E +   +   F           I  N+I  D  +        
Sbjct: 66  H--TNSGLVERIRKSTVTEQQAVAQTIAFLEQWVPKGASPICGNSIGQDRRFLYKHMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EQYFHYR 130


>gi|332188896|ref|ZP_08390601.1| exonuclease family protein [Sphingomonas sp. S17]
 gi|332011078|gb|EGI53178.1| exonuclease family protein [Sphingomonas sp. S17]
          Length = 253

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 46/188 (24%), Gaps = 30/188 (15%)

Query: 7   IYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + D ET G+        +     V + +        E             P    I  I 
Sbjct: 11  VIDLETTGQAPPTHGVCEIGWQDVALGKNGRWELEGEGGSLLVNPGRPIPPITQAIHHIL 70

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++         + +RR+      P    +  +   F+  +      ++           
Sbjct: 71  DEQVADAPWWH-DVARRVLD--PWPRRLALAAHRADFEQQFCTPAMTQS----------- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV---NAHDAKADV 181
                        I  +      WP      ++  L+      G+ H      H A  D 
Sbjct: 117 ----------ADWICTWKCALRLWP-DSPSFSNQVLRYWRKPEGLVHERGLPIHRAFPDA 165

Query: 182 YATLALVW 189
           Y T   + 
Sbjct: 166 YVTAHHLR 173


>gi|226952875|ref|ZP_03823339.1| oligoribonuclease [Acinetobacter sp. ATCC 27244]
 gi|226836386|gb|EEH68769.1| oligoribonuclease [Acinetobacter sp. ATCC 27244]
          Length = 186

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 11/131 (8%)

Query: 1   MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54
           M++      +  D E  G D   D+  + A +  D     +    V     +D  L   D
Sbjct: 1   MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDNLNILAEGPVLAVHQSDVILNAMD 60

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
                  G +   ++  R  +   +  ++  +F        +  +  N+I  D  +   +
Sbjct: 61  EWNTKQHGQSGLIERVRRSKLTAQDAEQQTLEFLKKWVNPKSSPMCGNSICQDRRFLHRL 120

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 121 MPELEQFFHYR 131


>gi|330957749|gb|EGH58009.1| ribonuclease T [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 225

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +   +R +   E T  F  +P      +  A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETALNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GI+     A
Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220


>gi|171779207|ref|ZP_02920178.1| hypothetical protein STRINF_01055 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282263|gb|EDT47690.1| hypothetical protein STRINF_01055 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 195

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ +D E F     +    Q + V+  R   ++++ + +      D         +TGIT
Sbjct: 7   YISFDLE-FNTVAEISHIIQVSAVKF-RDGVEVDNFDTY---VYTDIPLQSFINGLTGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +K  +      +       F     T ++GYN ++ D          +  D Y      
Sbjct: 62  SEKIAKAPK-LDKVLADFKDFVGK--TALVGYNALKSDLPL-LAENDLDLTDFY------ 111

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              + DL D      +   +GI          + KL  +A   GI   + H++  D   T
Sbjct: 112 ---KVDLYDEAYERRSSDLNGIA---------NLKLTSVADFLGIS-GHGHNSLEDARMT 158

Query: 185 LALVWLIREKKPK 197
             +     E    
Sbjct: 159 ALVYEKFMEFDEN 171


>gi|109897723|ref|YP_660978.1| ribonuclease T [Pseudoalteromonas atlantica T6c]
 gi|109700004|gb|ABG39924.1| RNAse T [Pseudoalteromonas atlantica T6c]
          Length = 211

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 55/198 (27%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +    D       + T  +   P +    +  A+   G
Sbjct: 18  VIVDVETAGFNAQTDALLEVAAITTQMDADGFLTPDKTFHYHVVPFEGANLEKAALEFNG 77

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P  ALR  + E E  + + +        +     ++  +N  FD  +      R+   
Sbjct: 78  IDPWCALRGALDETEVMKDLCKQIRKEQKDADCQRSVMVAHNAAFDLGFINAAIERSKIK 137

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +          L  +                             A     +   AH 
Sbjct: 138 RTPFHPFVSFDTTTLSGLALGQTVLVKACQ-----------------AANISFDQSEAHS 180

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   I  K
Sbjct: 181 ALYDTQKTAELYCYIVNK 198


>gi|148698603|gb|EDL30550.1| prion protein interacting protein 1, isoform CRA_a [Mus musculus]
          Length = 259

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 68  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 127

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 128 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 175

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G   +  L V      +      +           L D+     ++H    H    D 
Sbjct: 176 LPGQCHYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 235

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 236 KNIANIMKTLAYR 248


>gi|331646932|ref|ZP_08348031.1| putative DNA polymerase III epsilon subunit [Escherichia coli M605]
 gi|331044249|gb|EGI16380.1| putative DNA polymerase III epsilon subunit [Escherichia coli M605]
          Length = 206

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 11/108 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G D       +      D   + +     F  +         +A  + GI+ 
Sbjct: 105 LFLDTETTGLD-NTAEALEIG--LTDASGQVV-----FETRLKSTVAIGAQAAAVHGISE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           Q      +   + +R++          +I +N         +     +
Sbjct: 157 QALCGAPL-WTDVARQLRHAI--GGRPVIIFNARFDIRILKQTAAAHS 201


>gi|299146645|ref|ZP_07039713.1| exonuclease [Bacteroides sp. 3_1_23]
 gi|298517136|gb|EFI41017.1| exonuclease [Bacteroides sp. 3_1_23]
          Length = 198

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 27/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V    +          +P  +Y        + 
Sbjct: 1   MINFAAIDFET--ANGKRTSVCSVGVVIVRE-GKITNKIY-RLIRPRPNY-YTQWTTAVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T    +       E    I       +   +  +N  FD+        R  ++ Y  +
Sbjct: 56  GLTYDDTMEADE-FPEVWAEIKPLI---DGLPLVAHNSPFDE-----GCLRAVHELYDMT 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + +    +      R                    + +L  +A   G    N H A AD 
Sbjct: 107 YPD----YKFYCTCRTSRKVF---------GKDLPNHQLHTVAERCGYHLENHHHALADA 153

Query: 182 YATLALV 188
            A   + 
Sbjct: 154 EACAQIA 160


>gi|238063163|ref|ZP_04607872.1| oligoribonuclease [Micromonospora sp. ATCC 39149]
 gi|237884974|gb|EEP73802.1| oligoribonuclease [Micromonospora sp. ATCC 39149]
          Length = 198

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 10/151 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFI-TG 62
            V  D E  G D+  D   + A +  D     +    +V            PE V    G
Sbjct: 7   LVWIDCEMTGLDLGRDALIEVAALVTDPDLNVLGDGVDVVIHADEAALEAMPEIVRTMHG 66

Query: 63  IT--PQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +   ++  R  V  AE        +      P    +  N+I  D  +      R   D
Sbjct: 67  KSGLTEEVRRSAVTLAEAEDLVLDYVTSHVKDPRAAPLCGNSIATDRGFISRDMPR--LD 124

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
           ++        S    L        +     +
Sbjct: 125 AHLHYRMIDVSSIKELCRRWYPRVYFGQPRK 155


>gi|308235255|ref|ZP_07665992.1| exonuclease [Gardnerella vaginalis ATCC 14018]
 gi|311115068|ref|YP_003986289.1| hypothetical protein HMPREF0421_21184 [Gardnerella vaginalis ATCC
           14019]
 gi|310946562|gb|ADP39266.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 256

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 16/195 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G  +  D     A + +     K  +  +           +P+A  + G T + 
Sbjct: 32  FDTETTGAILGEDSICS-ATLVLRNPQNKTHNDVIATWLINPHKPINPKASQVNGFTDEF 90

Query: 68  ALR---DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW-D 123
                 +   E E            N  ++ YN     +    ++   +           
Sbjct: 91  LQENGGEPTAEIEALAAAVSLAQSKNIPLLAYNAPFDVEMLRHDLKKWDLTSLNNRPNST 150

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVY 182
             +    ++D +    A                   L       G+E   + HDA AD  
Sbjct: 151 INDGEILVVDPLVIDRAV----------SKRTGKRTLTHTTQFYGVEPIGDFHDATADTV 200

Query: 183 ATLALVWLIREKKPK 197
           A + L+  I E    
Sbjct: 201 AAVDLIKPISELHED 215


>gi|319760221|ref|YP_004124159.1| oligoribonuclease [Candidatus Blochmannia vafer str. BVAF]
 gi|318038935|gb|ADV33485.1| oligoribonuclease [Candidatus Blochmannia vafer str. BVAF]
          Length = 182

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
          M  + +  D E  G +   DR  + A +  D +   +
Sbjct: 1  MDKNLIWIDLEMTGLNPEKDRIIEIATLITDSELNIL 37


>gi|213692117|ref|YP_002322703.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|213523578|gb|ACJ52325.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|320458233|dbj|BAJ68854.1| hypothetical protein BLIJ_1267 [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 185

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 4/59 (6%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITG 62
           +  D ET G D   D   +   +      + ++            +  P      + G
Sbjct: 13 LLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHW---EGKPSEFIQSMHG 68


>gi|254429651|ref|ZP_05043358.1| exonuclease superfamily [Alcanivorax sp. DG881]
 gi|196195820|gb|EDX90779.1| exonuclease superfamily [Alcanivorax sp. DG881]
          Length = 215

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 55/190 (28%), Gaps = 20/190 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D ET G D         A V + +    + S++    K         + + I  + P
Sbjct: 46  VAIDCETTGLDSRTAELVSIAAVVI-KDGRVL-SSQGLDVKLMPPDSLKEDTIRIHRLRP 103

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                 G    +    +       N  ++G+         +R +     +D         
Sbjct: 104 VDLEG-GESVRDALDALLALV--GNRPLVGWCVAFDVAMINRYLRPLMGFDLPN------ 154

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                  D++     +      W  + D     +   +A A  +  +  H A+ D   + 
Sbjct: 155 -------DIIELSALYQKKMRYW--QPDVTPDLRFDAMASALQVPVMERHTARGDAVTSA 205

Query: 186 ALVWLIREKK 195
            +   +++  
Sbjct: 206 LMYLQLQKSY 215


>gi|110289067|gb|ABG66074.1| exonuclease family protein, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 267

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 54/191 (28%), Gaps = 27/191 (14%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET        +     +F  + V  R+   + S      +P D  +    +V  
Sbjct: 30  IAFFDVETS-VPQRAGQGYALLEFGAILVCPRRLVVVGSYATL-VRPGDLGVVSAASVRC 87

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT            + +  ++           G+N +RFD    R  F          
Sbjct: 88  NGITRDAVAAAPA-FRDVADAVYSVL--HGRVWAGHNIVRFDLARIREAFAEIGRPPPE- 143

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L ++                   A   K+  LA   G+    +H +  D
Sbjct: 144 ----PKGMIDTLPLL------------TQKFGRRAGDMKMASLANYFGLGR-QSHRSLDD 186

Query: 181 VYATLALVWLI 191
           V   L ++   
Sbjct: 187 VRMNLEVLKYC 197


>gi|104780960|ref|YP_607458.1| exonuclease [Pseudomonas entomophila L48]
 gi|95109947|emb|CAK14652.1| putative exonuclease [Pseudomonas entomophila L48]
          Length = 183

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 51/188 (27%), Gaps = 23/188 (12%)

Query: 6   VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D E T   G     +    +     V R+  +++  +  F +P       P    +T
Sbjct: 5   LVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQ-RFVRPRRRPQLTPFCRELT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYDSYRW 120
            I+           +E   +  ++       +  + +   +D       +  +  DS   
Sbjct: 64  HISQADVDNA-TPFSEVWGQFERWLVNHQAQLQAWVSWGDYDRKQLLQEWQVHHVDSLLL 122

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +             +                 ++ +L  L  +        H A  D
Sbjct: 123 KLPH-----------INLKQRFAKARHLQRPAGLNSALQLAGLQFS-----GQQHRALED 166

Query: 181 VYATLALV 188
              T  L+
Sbjct: 167 ARNTARLL 174


>gi|15451563|gb|AAK98687.1|AC021893_21 Putative exonuclease [Oryza sativa Japonica Group]
 gi|31432001|gb|AAP53700.1| exonuclease family protein, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 493

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 54/191 (28%), Gaps = 27/191 (14%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET        +     +F  + V  R+   + S      +P D  +    +V  
Sbjct: 30  IAFFDVETS-VPQRAGQGYALLEFGAILVCPRRLVVVGSYATL-VRPGDLGVVSAASVRC 87

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT            + +  ++           G+N +RFD    R  F          
Sbjct: 88  NGITRDAVAAAPA-FRDVADAVYSVL--HGRVWAGHNIVRFDLARIREAFAEIGRPPPE- 143

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L ++                   A   K+  LA   G+    +H +  D
Sbjct: 144 ----PKGMIDTLPLL------------TQKFGRRAGDMKMASLANYFGLGR-QSHRSLDD 186

Query: 181 VYATLALVWLI 191
           V   L ++   
Sbjct: 187 VRMNLEVLKYC 197


>gi|149189379|ref|ZP_01867664.1| hypothetical protein VSAK1_25975 [Vibrio shilonii AK1]
 gi|148836737|gb|EDL53689.1| hypothetical protein VSAK1_25975 [Vibrio shilonii AK1]
          Length = 176

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 21/151 (13%)

Query: 1   MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           M  + V+ +D E          T G         +     +D   +++     ++ KP  
Sbjct: 1   MNYNRVVCFDLEMCCWNVDGVGTTG------EIIEVGLAEIDLVKQEVVKRAQYYVKPET 54

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           D +       +TGITP+K  + G   A   + + + F  PN     +     DD      
Sbjct: 55  DKV-SLFCTELTGITPRKVEKQGRPLASVIQSMVKNFGGPNKIYASW---GRDDIILLEE 110

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
                 +     + N  + + + + ++    
Sbjct: 111 CQSKGIEMPFKEFVNLATLYRIQNRLKDKRI 141


>gi|144900367|emb|CAM77231.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
          MSR-1]
          Length = 189

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 11/94 (11%)

Query: 2  TNHFVIYDYE-TF--GRDVA-------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
              VIYD E T   G                Q   VR+D+ + +++  ++   +P  + 
Sbjct: 1  MRPVVIYDLEYTSWAGAQARNWSGAGEYREIVQIGAVRLDQDFRELDCLDIL-VRPRRNP 59

Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQF 85
                  +TGI+        V      +R+  F
Sbjct: 60 RLSDYFTQLTGISQAMLNESAVEAEGALQRLLDF 93


>gi|45185903|ref|NP_983619.1| ACR217Cp [Ashbya gossypii ATCC 10895]
 gi|44981693|gb|AAS51443.1| ACR217Cp [Ashbya gossypii ATCC 10895]
          Length = 225

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 16/118 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--------KPADDYLPD 54
              V  D E  G D   D   +   +  D     ++                        
Sbjct: 31  KPIVWIDCEMTGLDHTSDHIIEVCCLVTDGHLNPVDDGYESVVHASAAALAAMDAWCTQH 90

Query: 55  PEAVFITGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
             A  +T     +AL         EAE    I +    P   ++  N++  D  +   
Sbjct: 91  HGASGLT----ARALACPKSAAQVEAELLAYIRRLVPRPGRAVLAGNSVHMDRLFMLR 144


>gi|301167502|emb|CBW27085.1| putative exonuclease [Bacteriovorax marinus SJ]
          Length = 963

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 59/217 (27%), Gaps = 31/217 (14%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G D + D+      ++       +            D         +TGI  +
Sbjct: 10  VIDIETTGIDPSYDQIIDVGYLQF-EGTTLVRKYSSL---VQYDGKLSQFIKKLTGIDSK 65

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
             +         S  +   F        G++ I  +  +      R+F   +    D+G+
Sbjct: 66  MLINAP-SWQVVSPEVMDVF--------GHHLIAHNAEFE-----RSFLSDHFARIDDGS 111

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
            R    D +  +    P            +S KL++      I     H    D    L 
Sbjct: 112 GRESYEDSLYFLSLLFPKM----------SSLKLENFICDWKIAEHEEHRGFQDSLDLLK 161

Query: 187 ---LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
              +      +  +L   L     K  L      +  
Sbjct: 162 VLLIAVATVRRDVELNATLGALFKKYNLTDYWYYKFF 198


>gi|300715033|ref|YP_003739836.1| Oligoribonuclease [Erwinia billingiae Eb661]
 gi|299060869|emb|CAX57976.1| Oligoribonuclease [Erwinia billingiae Eb661]
          Length = 181

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          + +  D E  G D   DR  + A +  D     +  
Sbjct: 7  NLIWIDLEMTGLDPEQDRIIEIATLVTDADLNILAE 42


>gi|296112880|ref|YP_003626818.1| oligoribonuclease [Moraxella catarrhalis RH4]
 gi|295920574|gb|ADG60925.1| oligoribonuclease [Moraxella catarrhalis RH4]
 gi|326561112|gb|EGE11477.1| oligoribonuclease [Moraxella catarrhalis 7169]
 gi|326564455|gb|EGE14682.1| oligoribonuclease [Moraxella catarrhalis 103P14B1]
 gi|326564568|gb|EGE14793.1| oligoribonuclease [Moraxella catarrhalis 12P80B1]
 gi|326564778|gb|EGE14990.1| oligoribonuclease [Moraxella catarrhalis 46P47B1]
 gi|326567572|gb|EGE17687.1| oligoribonuclease [Moraxella catarrhalis BC1]
 gi|326569420|gb|EGE19480.1| oligoribonuclease [Moraxella catarrhalis BC8]
 gi|326571382|gb|EGE21397.1| oligoribonuclease [Moraxella catarrhalis BC7]
 gi|326575336|gb|EGE25264.1| oligoribonuclease [Moraxella catarrhalis CO72]
 gi|326576579|gb|EGE26486.1| oligoribonuclease [Moraxella catarrhalis 101P30B1]
 gi|326577403|gb|EGE27287.1| oligoribonuclease [Moraxella catarrhalis O35E]
          Length = 195

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
               +  D E  G D   D   + A +  D +   +    V   K +D  L   D     
Sbjct: 17  KKALIWIDLEMTGLDTQQDDIIEIATIVTDDELNILAEGPVLAIKVSDVVLNRMDDWNKN 76

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +  R  +  A+   +  +F S         +  N+I  D  +      +  
Sbjct: 77  QHGQSGLIDRVRRSTITLADAEAQTIEFLSKWVDAGISPMCGNSICQDRRFLARQMPKLE 136

Query: 115 YDSYRW 120
              +  
Sbjct: 137 RYFHYR 142


>gi|293372511|ref|ZP_06618893.1| putative DNA polymerase III subunit epsilon [Bacteroides ovatus SD
           CMC 3f]
 gi|292632320|gb|EFF50916.1| putative DNA polymerase III subunit epsilon [Bacteroides ovatus SD
           CMC 3f]
          Length = 198

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 27/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V    +          +P  +Y        + 
Sbjct: 1   MINFAAIDFET--ANGKRTSVCSVGVVIVRE-GKITNKIY-RLIRPRPNY-YTQWTTAVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T    +       E    I       +   +  +N  FD+        R  ++ Y  +
Sbjct: 56  GLTYDDTMEADE-FPEVWAEIKPLI---DGLPLVAHNSPFDE-----GCLRAVHELYDMT 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + +    +      R                    + +L  +A   G    N H A AD 
Sbjct: 107 YPD----YKFYCTCRTSRKVF---------GKDLPNHQLHTVAERCGYHLENHHHALADA 153

Query: 182 YATLALV 188
            A   + 
Sbjct: 154 EACAQIA 160


>gi|169342705|ref|ZP_02863746.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169299211|gb|EDS81281.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 204

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 17/191 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFI 60
             + +D ET G         Q + + VD   +    I     F          +PEA  I
Sbjct: 2   KLLFFDTETTGVKP--GSICQLSYILVDTSTKPQKTIGKNIFFTV-----DEMEPEAERI 54

Query: 61  TGITPQKA--LRDGVVEAEF-SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            G + +K   L +G+   +  +  I+ F        I  +N++FD  + ++         
Sbjct: 55  HGFSLEKLYELSEGMHFEDLYADFINDFLE---ADFIIGHNVQFDIKFLKHELLGLGEFF 111

Query: 118 YRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +       + D+  ++R    +    ++   +    T  ++ + A        N HD
Sbjct: 112 EPNNVFCTMKYYKDICKILRPTGDYKNPKLEEVIKHLNITDSEISETANKYFQGSGNYHD 171

Query: 177 AKADVYATLAL 187
           A+ D  AT   
Sbjct: 172 ARFDTAATYLT 182


>gi|322835471|ref|YP_004215497.1| exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
 gi|321170672|gb|ADW76370.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
          Length = 220

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 51/188 (27%), Gaps = 38/188 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G         + A V +    + +            D     +A+ I  IT  
Sbjct: 4   VIDTETCGL---QGGVVEVASVDI-EDGKIVNPMSDL---VRPDRPISHQAMAIHKITEA 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E   R H       +     +N  FD                       +
Sbjct: 57  MVADKPWIE-EIIPRYH------GSQYYVAHNASFDQRM------------------LPD 91

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
              D +  ++      P      S      S KL           ++ H A  D Y T A
Sbjct: 92  MPGDWICTVKLSRRLWPGIK--YSNMALYKSLKLDVATP----ADLHHHRALFDCYITAA 145

Query: 187 LVWLIREK 194
           L+  I ++
Sbjct: 146 LLIRIMDE 153


>gi|311694106|gb|ADP96979.1| ribonuclease T [marine bacterium HP15]
          Length = 208

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 57/210 (27%), Gaps = 35/210 (16%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYL 52
           M+  F     V+ D ET G +   D   + A V   +D         T V    P +   
Sbjct: 1   MSRRFRGFLPVVVDVETAGFNPERDALLEVAAVILTMDDDGWVRRAETHVQQIDPFEGAN 60

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYS 106
            +  A+  TGI P    R+ V E E    I                ++  +N  FD  + 
Sbjct: 61  LEQSALDFTGIDPWNPEREAVPEREGLSEIFSPIRKAVKNHDCKRAVLVGHNATFDHNFI 120

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                R           N    +   D            +             L      
Sbjct: 121 FAAALRADI------RRNPFHPFSTFDTATLAGLAYGHTV-------------LAQACKL 161

Query: 167 NGIEHVN--AHDAKADVYATLALVWLIREK 194
            GI   N  AH A  D   T  L   I  +
Sbjct: 162 AGIPFSNKEAHSAAYDAEKTADLFCGIVNR 191


>gi|262280955|ref|ZP_06058738.1| oligoribonuclease [Acinetobacter calcoaceticus RUH2202]
 gi|262257855|gb|EEY76590.1| oligoribonuclease [Acinetobacter calcoaceticus RUH2202]
          Length = 188

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 11/131 (8%)

Query: 1   MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54
           M++      +  D E  G D   D+  + A +  D     +    V      D  L   D
Sbjct: 1   MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDNLNVLAEGPVLAVHQPDRILNAMD 60

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
                  G +   ++  R  +   +   +  +F           +  N+I  D  +   +
Sbjct: 61  EWNTRQHGQSGLVERVRRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRL 120

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 121 MPELEQYFHYR 131


>gi|297563874|ref|YP_003682847.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848323|gb|ADH70341.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 277

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 12/145 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET  RD         A   VDR+ +       +   P    +P  +AV + GI+ ++
Sbjct: 60  FDTETSSRDPDTAFLVSAA--LVDREGK----ARTWLVDPGPREIP-ADAVAVHGISTER 112

Query: 68  ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           A  +G    E    I Q  +        ++ +N   +D         R+           
Sbjct: 113 ARAEGRPAGECLEEIGQALADQLSSGQGLVVFNAP-YDLRVLSGEMRRHGLTPLAERLSG 171

Query: 125 G-NSRWDLLDVMRAIYAFSPDGIQW 148
                 D L + R +  +       
Sbjct: 172 PLAPVVDPLVIDRGVEPYRRGKRNL 196


>gi|163802823|ref|ZP_02196712.1| ribonuclease T [Vibrio sp. AND4]
 gi|159173363|gb|EDP58186.1| ribonuclease T [Vibrio sp. AND4]
          Length = 214

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 59/199 (29%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D        ST  F  +P +    + EA+   G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLSMDDTGNLHPASTIHFHIEPFEGANLEKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  + E E  + I++        +  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAISEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                     A     ++  AH
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------AAGMEFDNREAH 182

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  K
Sbjct: 183 SALYDTQQTAELFCGIVNK 201


>gi|261326769|emb|CBH09742.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 397

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 53/194 (27%), Gaps = 33/194 (17%)

Query: 8   YDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +D E  G           D   +F            +       +P++     PE   +T
Sbjct: 90  FDLEFTGPPVFGPDGPTED-IMEFGFYSPAH-----DKVFSCLVRPSNGRCVSPEVTTLT 143

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT----------CIIGYNNIRFDDYYSRNIFY 111
            IT +    DG+   +   ++  F + P             ++ +     D    +    
Sbjct: 144 HITQKMLEEDGLPFRDAWAKVLDFLNTPEPQELPGAEKRLLVLSHGGKLADVSLIKWTLE 203

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IE 170
            +  +             D   ++R  +   P        D    ++ L DL        
Sbjct: 204 ASDMELPSNIIFG-----DTFHLIRDAHRRRPVT-----LDKHPPTWGLSDLVQWLRIPP 253

Query: 171 HVNAHDAKADVYAT 184
            + AH A  D   T
Sbjct: 254 TLPAHRAGNDAKMT 267


>gi|254516802|ref|ZP_05128860.1| oligoribonuclease [gamma proteobacterium NOR5-3]
 gi|219674307|gb|EED30675.1| oligoribonuclease [gamma proteobacterium NOR5-3]
          Length = 184

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + V  D E  G     DR  + A +  D     +    V     +D  L   D      
Sbjct: 5   QNLVWVDLEMTGLVPETDRVIEIATIVTDSDLNTLAEGPVIAIHQSDATLAAMDEWNTTH 64

Query: 61  TGITP--QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +     + E E +R   +F           +  N+I  D  +          
Sbjct: 65  HGSSGLCDRVRASTIDEQEAARLTIEFLKDWVPAGASPMCGNSICQDRRFMARHLPELER 124

Query: 116 DSYRW 120
             +  
Sbjct: 125 YFHYR 129


>gi|332224715|ref|XP_003261514.1| PREDICTED: ERI1 exoribonuclease 2 [Nomascus leucogenys]
          Length = 689

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +IES    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+     N       +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKSCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|297305033|ref|XP_001083188.2| PREDICTED: three prime repair exonuclease 2-like [Macaca mulatta]
          Length = 278

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 34/209 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47
             FV  D E  G        A+ +   V          D          ++   +  C  
Sbjct: 50  ETFVFLDLEATGLPSMDPEIAELSLFAVHRSSLENLERDESGAPVLPRVLDKLTLCMC-- 107

Query: 48  ADDYLPDPEAVFITGITPQ---KALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102
             +     +A  ITG++ +   +  + G  +    R +  F S      C++ +N   +D
Sbjct: 108 -PERPFTAKASEITGLSSEGLARCRKAG-FDGAVVRMLQAFLSRQAGPICLVAHNGFDYD 165

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
                    R      R +        D L  +R +      G +      G   + L  
Sbjct: 166 FPLLCAELRRLGARLPRDT-----VCLDTLPALRGLDRAHSHGTR----ARGRQGYSLGS 216

Query: 163 LAL-ANGIEHVNAHDAKADVYATLALVWL 190
           L       E   AH A+ DV+  L +   
Sbjct: 217 LFHRYFQAEPSAAHSAEGDVHTLLLIFLH 245


>gi|53728767|ref|ZP_00135217.2| COG1949: Oligoribonuclease (3'->5' exoribonuclease) [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208604|ref|YP_001053829.1| oligoribonuclease [Actinobacillus pleuropneumoniae L20]
 gi|165976560|ref|YP_001652153.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|190150461|ref|YP_001968986.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303250117|ref|ZP_07336319.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|303253291|ref|ZP_07339440.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307246049|ref|ZP_07528131.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307248157|ref|ZP_07530185.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307250390|ref|ZP_07532338.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|307252772|ref|ZP_07534663.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307255031|ref|ZP_07536849.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257187|ref|ZP_07538959.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307259467|ref|ZP_07541192.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|307261616|ref|ZP_07543284.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307263805|ref|ZP_07545411.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|166215747|sp|A3N1D8|ORN_ACTP2 RecName: Full=Oligoribonuclease
 gi|126097396|gb|ABN74224.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|165876661|gb|ABY69709.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|189915592|gb|ACE61844.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302647973|gb|EFL78180.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302651180|gb|EFL81334.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306852984|gb|EFM85207.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306855334|gb|EFM87509.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306857600|gb|EFM89708.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306859804|gb|EFM91826.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306861904|gb|EFM93880.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306864349|gb|EFM96260.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306866403|gb|EFM98266.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306868739|gb|EFN00548.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306870926|gb|EFN02664.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 184

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 9/127 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D   +R  + A +  D+    +    V     ++D L       +  
Sbjct: 7   QNLIWIDLEMTGLDPEKERIIEVATIVTDKDLNILAEGPVLTVHQSNDLLNKMSDWCIKT 66

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+  ++  +  + E     +   F           I  N++  D  +         
Sbjct: 67  HTENGL-IERVKQSKLTERAVELQTIDFLKQWVPKGASPICGNSVAQDKRFLYKYMPDLA 125

Query: 115 YDSYRWS 121
              +   
Sbjct: 126 DYFHYRH 132


>gi|294649278|ref|ZP_06726713.1| exoribonuclease II [Acinetobacter haemolyticus ATCC 19194]
 gi|292824831|gb|EFF83599.1| exoribonuclease II [Acinetobacter haemolyticus ATCC 19194]
          Length = 186

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 11/131 (8%)

Query: 1   MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54
           M++      +  D E  G D   D+  + A +  D     +    V     +D  L   D
Sbjct: 1   MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDNLNILAEGPVLAVHQSDVILNAMD 60

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
                  G +   ++  R  +   +  ++  +F        +  +  N+I  D  +   +
Sbjct: 61  EWNTKQHGQSGLIERVRRSKLTAQDAEQQTLEFLKKWVNPKSSPMCGNSICQDRRFLHRL 120

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 121 MPELEQFFHYR 131


>gi|301787433|ref|XP_002929126.1| PREDICTED: three prime repair exonuclease 2-like [Ailuropoda
           melanoleuca]
          Length = 236

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 59/208 (28%), Gaps = 32/208 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47
             FV  D E  G        A+ +   V          D          ++      C  
Sbjct: 8   ETFVFLDLEATGLPSIDPEVAEISLFAVHRSSLENPDQDESGAPVLPRVLDKLT--LCM- 64

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDD 103
           + +     +A  ITG++     R      +    R +  F S      C++ +N   +D 
Sbjct: 65  SPERPFTAKASEITGLSSDSLARCRKAGFDNAVVRTLEAFLSRQEGPICLVAHNGFDYDF 124

Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
                   R        +        D L  +R++      G +      G   + L  L
Sbjct: 125 PLLCTELRRLGAHLPPDT-----ICLDTLPALRSLDRAHSHGTR----AQGCKGYSLGSL 175

Query: 164 -ALANGIEHVNAHDAKADVYATLALVWL 190
                  E   AH A+ DV+  L +   
Sbjct: 176 FRRYFQAEPSAAHSAEGDVHTLLMVFLH 203


>gi|294793582|ref|ZP_06758719.1| putative exonuclease family protein [Veillonella sp. 3_1_44]
 gi|294455152|gb|EFG23524.1| putative exonuclease family protein [Veillonella sp. 3_1_44]
          Length = 327

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 64/218 (29%), Gaps = 32/218 (14%)

Query: 4   HFVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           +++++D E     +                  Q   V+++ + + I+   +F  KP    
Sbjct: 2   NYIVFDLEWNQPYSNDISFMKRTKMPLTGEIIQIGAVKLNEKMDIIDHFTMFI-KPQYLT 60

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
                   +TGIT  +    GV      +   +         +  +    D    R    
Sbjct: 61  RMHKHVRELTGITTHEL-NHGVPFKTAMQYFQK---WCGDEYMLLSWGSDDILILRENLM 116

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
            +   +  +                          ++ +    + +  ++DL      EH
Sbjct: 117 LHKMKALSYDQ-------------WVDAQMIYSYQRYGTSQQYSVAHAMEDL--NISTEH 161

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
           ++AH+A  D   T  +   +   +  L   L    + N
Sbjct: 162 LSAHNALHDAVFTAHICQTLDIAQGILHYDLIRKESSN 199


>gi|281347637|gb|EFB23221.1| hypothetical protein PANDA_019230 [Ailuropoda melanoleuca]
          Length = 248

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 59/208 (28%), Gaps = 32/208 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRV----------DRQW-----EKIESTEVFFCKP 47
             FV  D E  G        A+ +   V          D          ++      C  
Sbjct: 20  ETFVFLDLEATGLPSIDPEVAEISLFAVHRSSLENPDQDESGAPVLPRVLDKLT--LCM- 76

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDD 103
           + +     +A  ITG++     R      +    R +  F S      C++ +N   +D 
Sbjct: 77  SPERPFTAKASEITGLSSDSLARCRKAGFDNAVVRTLEAFLSRQEGPICLVAHNGFDYDF 136

Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
                   R        +        D L  +R++      G +      G   + L  L
Sbjct: 137 PLLCTELRRLGAHLPPDT-----ICLDTLPALRSLDRAHSHGTR----AQGCKGYSLGSL 187

Query: 164 -ALANGIEHVNAHDAKADVYATLALVWL 190
                  E   AH A+ DV+  L +   
Sbjct: 188 FRRYFQAEPSAAHSAEGDVHTLLMVFLH 215


>gi|227833883|ref|YP_002835590.1| putative oligoribonuclease [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454899|gb|ACP33652.1| putative oligoribonuclease [Corynebacterium aurimucosum ATCC
           700975]
          Length = 210

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 8/118 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D       + A V  D +   ++          ++ L   D     +
Sbjct: 9   DRLVWIDLEMTGLDPKRHVIVEVAAVVTDAELNILDEGIDIVVHATEEELAQMDDFVTEM 68

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112
              +   ++     +  AE    + +         +   +  N+I  D  + R    R
Sbjct: 69  HAKSGLDKEIRESAITIAEAEEAVLKLVEKHCDANHPAPLAGNSIATDRTFIREYMPR 126


>gi|323498389|ref|ZP_08103386.1| oligoribonuclease [Vibrio sinaloensis DSM 21326]
 gi|323316531|gb|EGA69545.1| oligoribonuclease [Vibrio sinaloensis DSM 21326]
          Length = 181

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D    +  + A +  D +   +    V     +D  L   D      
Sbjct: 6   QNLIWMDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQSDAELAKMDEWCTTT 65

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+   +     V E +  R+  +F           I  N+I  D  +         
Sbjct: 66  HTGSGL-VARVKASQVTEQDAIRQTIEFLEKWVPKGKSPICGNSIGQDRRFLYKHMPELE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 EYFHYR 130


>gi|294791718|ref|ZP_06756866.1| putative exonuclease family protein [Veillonella sp. 6_1_27]
 gi|294456948|gb|EFG25310.1| putative exonuclease family protein [Veillonella sp. 6_1_27]
          Length = 327

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 64/218 (29%), Gaps = 32/218 (14%)

Query: 4   HFVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           +++++D E     +                  Q   V+++ + + I+   +F  KP    
Sbjct: 2   NYIVFDLEWNQPYSNDISFMKRTKMPLTGEIIQIGAVKLNEKMDIIDHFTMFI-KPQYLT 60

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
                   +TGIT  +    GV      +   +         +  +    D    R    
Sbjct: 61  RMHKHVRELTGITTHEL-NHGVPFKTAMQYFQK---WCGDEYMLLSWGSDDILILRENLM 116

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
            +   +  +                          ++ +    + +  +++L      EH
Sbjct: 117 LHKMKALSYDQ-------------WVDAQMIYSYQRYGTNQQYSVAHAMENL--NISTEH 161

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
           ++AH+A  D   T  +   +   +  L   L    + N
Sbjct: 162 LSAHNALHDAVFTAHICQSLDIAQGILHYDLIRKESSN 199


>gi|291544952|emb|CBL18061.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Ruminococcus sp. 18P13]
          Length = 176

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 57/192 (29%), Gaps = 34/192 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
              ++++D ET   + + DR      + ++     + + +          +   D     
Sbjct: 1   MAVYIVFDVET--PNRSNDRMSAIGISAIK---DNKIVANYFSL---VDPETHFDYFNTK 52

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI   K        AE  ++I    S     ++ +N              R     Y 
Sbjct: 53  LTGIDADKVKGAP-NFAELWKKIDPIMSK--GILVAHNA------VFNMSVLRACLRDYG 103

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            SW         L ++R      PD               L  +    GI   + H A +
Sbjct: 104 ISWKPTAKY---LCMVRIGRRVLPDM-----------KHNLNVMCDHYGIALDH-HQADS 148

Query: 180 DVYATLALVWLI 191
           D +A   ++   
Sbjct: 149 DSHACAEILLRY 160


>gi|163749340|ref|ZP_02156589.1| oligoribonuclease [Shewanella benthica KT99]
 gi|161331059|gb|EDQ01985.1| oligoribonuclease [Shewanella benthica KT99]
          Length = 181

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G D   D+  + A +  D++   +    V      D+ L   D      
Sbjct: 6   NNLIWVDLEMTGLDPETDKVIEIATIVTDKELNILAEGPVIAIFQTDEQLATMDEWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   ++       E +      +F S         +  N+I  D  +      +   
Sbjct: 66  HGESGLVERVRSSQYSEDDAIAMTIEFVSQYVPQGISPMCGNSIGQDRRFLNKYMPKLED 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|15641389|ref|NP_231021.1| hypothetical protein VC1377 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121588011|ref|ZP_01677763.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728525|ref|ZP_01681548.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675170|ref|YP_001216938.1| hypothetical protein VC0395_A0992 [Vibrio cholerae O395]
 gi|153212725|ref|ZP_01948382.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153817774|ref|ZP_01970441.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153821312|ref|ZP_01973979.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|153825269|ref|ZP_01977936.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153828771|ref|ZP_01981438.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|183179375|ref|ZP_02957586.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227081548|ref|YP_002810099.1| hypothetical protein VCM66_1332 [Vibrio cholerae M66-2]
 gi|229505042|ref|ZP_04394552.1| hypothetical protein VCF_000248 [Vibrio cholerae BX 330286]
 gi|229511288|ref|ZP_04400767.1| hypothetical protein VCE_002695 [Vibrio cholerae B33]
 gi|229515749|ref|ZP_04405208.1| hypothetical protein VCB_003407 [Vibrio cholerae TMA 21]
 gi|229518406|ref|ZP_04407850.1| hypothetical protein VCC_002430 [Vibrio cholerae RC9]
 gi|229521489|ref|ZP_04410908.1| hypothetical protein VIF_002026 [Vibrio cholerae TM 11079-80]
 gi|229529547|ref|ZP_04418937.1| hypothetical protein VCG_002642 [Vibrio cholerae 12129(1)]
 gi|229608046|ref|YP_002878694.1| hypothetical protein VCD_002964 [Vibrio cholerae MJ-1236]
 gi|254225334|ref|ZP_04918946.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|254286171|ref|ZP_04961131.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254848499|ref|ZP_05237849.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297578962|ref|ZP_06940890.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298498539|ref|ZP_07008346.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655872|gb|AAF94535.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547752|gb|EAX57843.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629189|gb|EAX61629.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124116375|gb|EAY35195.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|125622175|gb|EAZ50497.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|126511712|gb|EAZ74306.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126521130|gb|EAZ78353.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146317053|gb|ABQ21592.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|148875724|gb|EDL73859.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149741097|gb|EDM55156.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150423840|gb|EDN15781.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|183012786|gb|EDT88086.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227009436|gb|ACP05648.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227013292|gb|ACP09502.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229333321|gb|EEN98807.1| hypothetical protein VCG_002642 [Vibrio cholerae 12129(1)]
 gi|229341587|gb|EEO06590.1| hypothetical protein VIF_002026 [Vibrio cholerae TM 11079-80]
 gi|229345121|gb|EEO10095.1| hypothetical protein VCC_002430 [Vibrio cholerae RC9]
 gi|229347518|gb|EEO12478.1| hypothetical protein VCB_003407 [Vibrio cholerae TMA 21]
 gi|229351253|gb|EEO16194.1| hypothetical protein VCE_002695 [Vibrio cholerae B33]
 gi|229357265|gb|EEO22182.1| hypothetical protein VCF_000248 [Vibrio cholerae BX 330286]
 gi|229370701|gb|ACQ61124.1| hypothetical protein VCD_002964 [Vibrio cholerae MJ-1236]
 gi|254844204|gb|EET22618.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297536556|gb|EFH75389.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297542872|gb|EFH78922.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|327484047|gb|AEA78454.1| hypothetical protein VCLMA_A1213 [Vibrio cholerae LMA3894-4]
          Length = 176

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 21/151 (13%)

Query: 1   MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           M  + V+ +D E          T G         +     +D    +I     +F KP  
Sbjct: 1   MNYNRVVCFDLEMCCWNENGVGTTG------EIIEIGLAEIDLAAGEIVKRAQYFVKPEK 54

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           D +       +TGITP+K  + G   AE  + + + F   N     +     DD    N 
Sbjct: 55  DEI-SLFCAELTGITPRKIEKQGRPLAEVIQSMVKNFGGSNKIYASW---GRDDLILLNE 110

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
                       + N  + + +   ++    
Sbjct: 111 CREKGLSVPFQEFLNLATLYRIQHRLKDKRI 141


>gi|73977201|ref|XP_862517.1| PREDICTED: similar to prion protein interacting protein 1 isoform 4
           [Canis familiaris]
 gi|301781887|ref|XP_002926358.1| PREDICTED: ERI1 exoribonuclease 3-like isoform 1 [Ailuropoda
           melanoleuca]
          Length = 259

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 68  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 127

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 128 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 175

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 176 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 235

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 236 KNIANIMKTLAYQ 248


>gi|323700913|gb|ADY00066.1| hypothetical protein [Escherichia coli]
          Length = 282

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 46/190 (24%), Gaps = 24/190 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G         +      D     I     F  +       + +A  + GI  
Sbjct: 105 LFLDTETTGLG-NTAEALEIG--LTDAAGRVI-----FETRLKPTVAIEAQAAAVHGIDE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      + + ++          I    N  FD    +     +   +        
Sbjct: 157 PALSGAP-SWPDVALQLRHAIGDRPVIIF---NAPFDTRILKQTAAAHGDPA-------- 204

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D L  +    A       + + +   T       + A       AH A AD   T 
Sbjct: 205 ----DWLGELTVYCAMELAAGYFGATNRYGTISLASAASQAALAWEGEAHSAIADARMTA 260

Query: 186 ALVWLIREKK 195
            +V  I    
Sbjct: 261 GVVNAIAAYH 270


>gi|242086513|ref|XP_002439089.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor]
 gi|241944374|gb|EES17519.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor]
          Length = 319

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 32/194 (16%)

Query: 2   TNHFVIYDYETFGRDVALDR--PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAV 58
               V +D ET     A  R    +F  + V  R+  ++ S +          L    +V
Sbjct: 8   MREIVFFDVETTAPTPA-GRWWLLEFGAILVCPRKLVEVASYDTL---IRPGDL----SV 59

Query: 59  FITG-ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            +T   +  +A+       + + +I +          G+N  RFD         R  +  
Sbjct: 60  AVTKRFSDVEAIASAPPFKDVADKIFEILD--GRVWAGHNIQRFD-----CPRIREAFAD 112

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                       D L+V+ A +                   K+  LA   GI     H +
Sbjct: 113 IGRPAPEPAGVIDSLNVLAADFGRRA------------GDLKMATLATYFGIG-KQKHRS 159

Query: 178 KADVYATLALVWLI 191
             D    L ++   
Sbjct: 160 LDDARMNLEVLKHC 173


>gi|126330776|ref|XP_001373310.1| PREDICTED: similar to Three prime histone mRNA exonuclease 1
           [Monodelphis domestica]
          Length = 432

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             + D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 213 ICVIDFEATCEEGNPPEFTHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 272

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT     R      +  R + ++  +         + +   +         +    R 
Sbjct: 273 TGITQDMVDRA-ATFPQVLRNVVEWMKLKELGTTYKYSILTDGSWDMSKFLNIQCQISRL 331

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y S+   W N    + +   V R     +    +     DG     L D
Sbjct: 332 RYPSFAKKWINIRKSYGNFYKVPRNQTKLTIMLEKLGMSYDGRPHSGLDD 381


>gi|297278522|ref|XP_002801563.1| PREDICTED: ERI1 exoribonuclease 3 isoform 2 [Macaca mulatta]
 gi|119627449|gb|EAX07044.1| prion protein interacting protein, isoform CRA_c [Homo sapiens]
 gi|194387402|dbj|BAG60065.1| unnamed protein product [Homo sapiens]
          Length = 259

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 68  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 127

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 128 IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 175

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 176 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 235

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 236 KNIANIMKTLAYR 248


>gi|330444995|ref|ZP_08308649.1| oligoribonuclease monomer [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328493113|dbj|GAA03146.1| oligoribonuclease monomer [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 181

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 11/127 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D    +  + A +  D Q   +    V     +++ L   D      
Sbjct: 6   KNLIWIDLEMTGLDPETHKIIEIATIVTDPQLNILAEGPVLAIHQSEEELAKMDDWCTNT 65

Query: 61  TGITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
              T      +  +  V E +   +   F           I  N+I  D  +        
Sbjct: 66  H--TNSGLVDRIRKSTVTEQQAVAQTIAFLEQWVPKGVSPICGNSIGQDRRFLYKHMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EQYFHYR 130


>gi|327264247|ref|XP_003216926.1| PREDICTED: three prime repair exonuclease 2-like [Anolis
           carolinensis]
          Length = 227

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 56/207 (27%), Gaps = 40/207 (19%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFA--GV-------------RVDRQW--EKIESTEVFFC 45
             FV  D ET G      R A+     V                ++     I+       
Sbjct: 8   QTFVFLDIETTGLPRDWPRMAELCLFAVHRRSLLLSLPNDALTPQELLPRIIDK---LTL 64

Query: 46  KPADDYLPDPEAVFITGITPQKALR--DGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRF 101
                    P A  ITG++ Q         + +     +  F        C++ +N + F
Sbjct: 65  CIDPQKPFTPGAEEITGLSNQNLEENCKQDLNSAVVEALRGFLCRQAGPVCLVAHNGLGF 124

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D         R                 D L  +RA+   +  G Q  +           
Sbjct: 125 DFPLLHTELQRVG-----TKLSLDMGCLDTLLALRALVKGAHGGYQLGNMY--------- 170

Query: 162 DLALANGIEHVNAHDAKADVYATLALV 188
                 G + V +H A+ DV   L + 
Sbjct: 171 --RYFYGQDPVRSHSAEGDVITLLLVF 195


>gi|295677244|ref|YP_003605768.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
           CCGE1002]
 gi|295437087|gb|ADG16257.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
           CCGE1002]
          Length = 203

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 13/173 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + V  D E  G +   DR  + A V  +   +++    V     +D+ L   D       
Sbjct: 19  NLVWLDMEMTGLEPDTDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAKMDEWNQNTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111
           G +    +     V EA+ + +I +F      P    +  N+I  D  +          +
Sbjct: 79  GRSGLIDRVKVSTVSEADATAQIREFLGQYVPPGKSPMCGNSICQDRRFMARWMPDLESF 138

Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
            ++ +    +      RW  ++       A            D    ++   L
Sbjct: 139 FHYRNLDVSTLKELCRRWQPVIYKGFQKRAMHTALADIHESIDELKYYREHFL 191


>gi|331015388|gb|EGH95444.1| hypothetical protein PLA106_05467 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 186

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 57/198 (28%), Gaps = 28/198 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D E  G                       E    +    + +++  P A+ +T
Sbjct: 5   KEIFVSVDIEASGPIPGKYSMLSIGACLTT---NPAEQFSCYLKPISKEFV--PAALEVT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYD 116
           G++  K  ++G+  AE   +   +             +G+N            F   ++ 
Sbjct: 60  GLSLDKLRKEGLEPAEAMSQFKAWVESLAGADQSVVFVGFNASFD------WSFVNYYFH 113

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
            Y      G +  D+  +       +              S +  ++      E    HD
Sbjct: 114 QYLGENPFGIAALDIKSMFFGTAQCT------------WKSTRSSEIEKVVSPETSGNHD 161

Query: 177 AKADVYATLALVWLIREK 194
           A  D      L  LIREK
Sbjct: 162 ALDDAVYQAELFNLIREK 179


>gi|310641105|ref|YP_003945863.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
 gi|309246055|gb|ADO55622.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
          Length = 177

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 5/132 (3%)

Query: 4   HFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +++I+D E           +   +   V+V+   E I   + F  KP  +         +
Sbjct: 2   NYIIFDLEATCWENDRTRQNEIIEIGAVKVNVNLEIIGEFQTFI-KPKLNPQLSDFCKSL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T I+ Q          +   +  ++       +  +              ++   +  R 
Sbjct: 61  TSISQQDIDMATY-FPQAIYKFQEWIGKEPYYLCSWGFYDKSQLKKDCELHKIRTEWIRN 119

Query: 121 SWDNGNSRWDLL 132
                +    L+
Sbjct: 120 HISIKHQHGKLI 131


>gi|220912933|ref|YP_002488242.1| oligoribonuclease [Arthrobacter chlorophenolicus A6]
 gi|219859811|gb|ACL40153.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 208

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 17/118 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              V  D E  G D+  D   + A +  D +   +        KP D          +  
Sbjct: 6   ERIVWIDCEMTGLDIKNDALIEVAALVTDSELNILGEGVDVVIKPDD-----AAVAQMND 60

Query: 63  ITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                  + G+             EA     I ++   P    +G N++  D  +   
Sbjct: 61  FVRDMHTKSGLLKELPSGKTMAEAEAAVMEYIAEWVPEPRKAPLGGNSVGTDRVFLSR 118


>gi|168207510|ref|ZP_02633515.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170661145|gb|EDT13828.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 204

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 17/191 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFI 60
             + +D ET G         Q + + VD   +    I     F          +PEA  I
Sbjct: 2   KLLFFDTETTGVKP--GSICQLSYILVDTSTKPQKTIGKNIFFTV-----DEMEPEAERI 54

Query: 61  TGITPQKA--LRDGVVEAEF-SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            G + +K   L +G+   +  +  I+ F        I  +N++FD  + ++         
Sbjct: 55  HGFSLEKLYELSEGMYFEDLYANFINDFLE---ADFIIGHNVQFDIKFLKHELLGLGEFF 111

Query: 118 YRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +       + D+  ++R    +    ++   +    T  ++   A        N HD
Sbjct: 112 EPNNVFCTMKYYKDICKILRPTGDYKNPKLEEVIKHLNITDSEISKTANKYFQGSGNYHD 171

Query: 177 AKADVYATLAL 187
           A+ D  AT   
Sbjct: 172 ARFDTAATYLT 182


>gi|331000795|ref|ZP_08324441.1| oligoribonuclease [Parasutterella excrementihominis YIT 11859]
 gi|329570323|gb|EGG52056.1| oligoribonuclease [Parasutterella excrementihominis YIT 11859]
          Length = 204

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 9/163 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60
           N+ +  D E  G +  ++R  + A V  D Q   I    V         L + ++     
Sbjct: 29  NNLIWMDLEMTGLEPQINRILEMAAVITDPQLNVIAEGPVVAIHQDASILSNMDSWNTAT 88

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+   + L   V E E ++    FFS         +  N+I  D  +      R  
Sbjct: 89  HTRSGLVN-RCLESKVTEDEAAQIFIDFFSKYVPAGKSPLCGNSIGQDRRFMARWTPRLE 147

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
              +  + D  + +  +      +        +  +  D   S
Sbjct: 148 QFFHYRNLDVSSFKECVKRWAPEVMKKYQKTSRHEALSDIYDS 190


>gi|290998255|ref|XP_002681696.1| predicted protein [Naegleria gruberi]
 gi|284095321|gb|EFC48952.1| predicted protein [Naegleria gruberi]
          Length = 185

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 20/133 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------ 55
            +  V  D E  G D+  D   + A +  D     I   +      +D  L +       
Sbjct: 7   QDPIVWVDMEMTGLDIDSDHILEIAVIITDGNLNIIAQLDSLIVHQSDSVLDNMNDWCKQ 66

Query: 56  --------EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
                    AV  +  + Q+              +  + +      +  N++  D  + +
Sbjct: 67  HHGDSGLTAAVRKSSFSIQQVEDT------VLDFVKHYVASERLAPLAGNSVYCDRLFMK 120

Query: 108 NIFYRNFYDSYRW 120
               R     +  
Sbjct: 121 KEMKRLDEYLHYR 133


>gi|285018424|ref|YP_003376135.1| oligoribonuclease [Xanthomonas albilineans GPE PC73]
 gi|283473642|emb|CBA16145.1| probable oligoribonuclease protein [Xanthomonas albilineans]
          Length = 190

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 13/128 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
           +  +  D E  G D   D   + A V  D Q   +     F        L   EA+    
Sbjct: 9   DRLIWIDLEMTGLDTERDSIIEIATVVTDAQLNVLAEGPEFAIA---HPLQTLEAMDEWN 65

Query: 59  -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112
                 +   Q+ L   V  A+   +   F +         +  N+I  D  +      R
Sbjct: 66  RNQHRQSGLWQRVLDSQVGLAQAEAQTMAFLTQWCKPGASPMCGNSICQDRRFLHRQMPR 125

Query: 113 NFYDSYRW 120
                +  
Sbjct: 126 LERFFHYR 133


>gi|170739695|ref|YP_001768350.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168193969|gb|ACA15916.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 222

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 28/121 (23%), Gaps = 10/121 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFITG 62
            +  D ET G   A DR   F  V +D       S  +              P A  + G
Sbjct: 22  LLAVDVETTGLG-AEDRVVSFGAVLLDTATLLGGSPVLACHHLIFDPGRPSHPRAEAVHG 80

Query: 63  ITPQKALRDGVV--EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
                           +    +          ++  +N  FD  +    F          
Sbjct: 81  YDDWLLRHQDPARGHLDAVAALLA-----GADLVVAHNAAFDLGFLAREFRAAGRPDPAR 135

Query: 121 S 121
            
Sbjct: 136 P 136


>gi|332845434|ref|XP_003315045.1| PREDICTED: ERI1 exoribonuclease 2 isoform 3 [Pan troglodytes]
          Length = 328

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +I+S    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+     N       +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|257056841|ref|YP_003134673.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora
           viridis DSM 43017]
 gi|256586713|gb|ACU97846.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora
           viridis DSM 43017]
          Length = 202

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           MT+  V  D E  G D+A D   + A +  D +   +           D+ L + P+ V 
Sbjct: 1   MTDRLVWIDCEMTGLDLAKDALIEIAVLVTDAELNVLGDGVDLVIHADDEALANMPDVVR 60

Query: 60  -IT---GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            +    G+T ++  R  +   E        I +    P T  +  N+I  D  +      
Sbjct: 61  EMHARSGLT-EEVRRSTMTLEEAERRALAYIREHVPEPKTAPLAGNSIATDRGFI--ARD 117

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
               DSY        S    L        + 
Sbjct: 118 MPTLDSYLHYRMVDVSSIKELIRRWYPRIYY 148


>gi|260556115|ref|ZP_05828334.1| oligoribonuclease Orn [Acinetobacter baumannii ATCC 19606]
 gi|260410170|gb|EEX03469.1| oligoribonuclease Orn [Acinetobacter baumannii ATCC 19606]
          Length = 163

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 13/132 (9%)

Query: 1   MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M++      +  D E  G D   D+  + A +  D     +    V       D + +  
Sbjct: 1   MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIH-QPDRILNAM 59

Query: 57  ---AVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                   G +   ++  R  +   +   +  +F           +  N+I  D  +   
Sbjct: 60  DEWNTRQHGQSGLIERVRRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHR 119

Query: 109 IFYRNFYDSYRW 120
           +        +  
Sbjct: 120 LMPELEQYFHYR 131


>gi|213162324|ref|ZP_03348034.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
          Length = 73

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 7/69 (10%)

Query: 7  IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
          I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4  IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56

Query: 67 KALRDGVVE 75
                 +E
Sbjct: 57 MVADKPWIE 65


>gi|289209008|ref|YP_003461074.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
          K90mix]
 gi|288944639|gb|ADC72338.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
          K90mix]
          Length = 188

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           + +  D E  G D   DR  + A +  D++   +  
Sbjct: 6  ENLIWIDLEMTGLDPQNDRIIEVATIVTDKELNILAE 42


>gi|313889801|ref|ZP_07823443.1| DNA polymerase III, epsilon subunit [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313121846|gb|EFR44943.1| DNA polymerase III, epsilon subunit [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 195

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 32/196 (16%)

Query: 4   HFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +++ +D E    +   D     Q + V++    E++++ + F      D         +T
Sbjct: 6   NYIAFDLE---FNTVNDVSHLIQLSAVKM-ANHEEVDNFDSF---VYTDVPLQSFINGLT 58

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  +  R   +  +       F       +IGYN+ + D     +     F       
Sbjct: 59  GITADQIARAPKIN-QVLEDFKVFVGDH--ALIGYNSQKSDLPILADNGLDLF------- 108

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
              G  + DL D      +   +GI         T+ KL  +A   GI+    H++  D 
Sbjct: 109 ---GQYKVDLYDEAFERRSSDLNGI---------TNLKLTTVARFLGIK-GKGHNSLEDA 155

Query: 182 YATLALVWLIREKKPK 197
             T  +     E    
Sbjct: 156 RMTARIYETFLEFDDN 171


>gi|292669904|ref|ZP_06603330.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648701|gb|EFF66673.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 219

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 29/200 (14%)

Query: 6   VIYDYETFGRDVAL--------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           ++ D E                    +   VR++  +E+ +  + + C   +  +     
Sbjct: 4   IVVDLEMNPVSKEYREVRRKLNGEIIEIGAVRLNENYEQEDEFQCYVC--PEYGMVKKHI 61

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYD 116
             +TGIT +K          FS   H F +         Y+    D    R    R    
Sbjct: 62  TELTGITQEKVEGHPA----FSDSFHSFVAWIGAAETKIYSWSMSDIKQLRKEC-RLKLP 116

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
            +  +W +           R +        +    +  A    L  +         + H 
Sbjct: 117 DFDVNWLDT----------RWVDLQQEFDDRLGLHNSLALKHALGAMGRRF---EGSQHS 163

Query: 177 AKADVYATLALVWLIREKKP 196
           A AD   T A++ L+++   
Sbjct: 164 ALADAVNTSAVLALMQDDAK 183


>gi|251794793|ref|YP_003009524.1| exonuclease RNase T and DNA polymerase III [Paenibacillus sp.
           JDR-2]
 gi|247542419|gb|ACS99437.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus sp.
           JDR-2]
          Length = 264

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 52/193 (26%), Gaps = 21/193 (10%)

Query: 5   FVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++I D E  GR  A D      +   VR++   ++ +       KP      +      T
Sbjct: 3   YIILDIEFNGRKFASDLPMEVIEIGAVRLNADLQQTDIFSSLI-KPVYFSKLNSFIKKKT 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI  ++                 +       ++             +       D++  S
Sbjct: 62  GIPQEEIDIAPK-FPRVIGEFINWLDRGEPFMLFTWGGEDLKRIVYDTRMHKLDDAFWLS 120

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D  D+++    +                     LA  N +   NAH A  D 
Sbjct: 121 -------MDTFDLLKGYLRYKNITNDVSVE---------AALADLNLVFEGNAHRALDDA 164

Query: 182 YATLALVWLIREK 194
             T  +   I E 
Sbjct: 165 IMTADVFRAIFEH 177


>gi|322391860|ref|ZP_08065325.1| DNA polymerase III, epsilon subunit [Streptococcus peroris ATCC
           700780]
 gi|321145340|gb|EFX40736.1| DNA polymerase III, epsilon subunit [Streptococcus peroris ATCC
           700780]
          Length = 196

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ +D E F +        Q + V   +  E++ + + +      D         +TGIT
Sbjct: 7   YISFDLE-FNKHQEKTHLIQVSAVHF-KDGEEVGAFDSY---VYTDVPLKSFINGLTGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       VE E  ++  +F    N  ++GYN  + D                   +  
Sbjct: 62  SETLKDAPKVE-EVLQKFQEFI--GNLPLVGYNAAKSDL-------------PILQEYGL 105

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 L+D+      ++    +  S   G  + KLQ +A   G +   +H++  D   T
Sbjct: 106 DYREQYLVDL------YNEALERRSSDLHGIANLKLQTVASFLGFK-GQSHNSLEDARMT 158

Query: 185 LALVWLIREKKPK 197
             +     E    
Sbjct: 159 AQVYEAFLESDES 171


>gi|88703626|ref|ZP_01101342.1| Exonuclease family [Congregibacter litoralis KT71]
 gi|88702340|gb|EAQ99443.1| Exonuclease family [Congregibacter litoralis KT71]
          Length = 221

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 52/184 (28%), Gaps = 20/184 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F++ D E  G D           VRV      + S      +  +      ++  I  + 
Sbjct: 41  FLVCDAEMSGLDPRQAELLSLGWVRVSGLEIALGSARHLLIRNRESV---GQSATIHQLR 97

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +    G    +    +    +     ++ ++N   D  +        F          
Sbjct: 98  DCELRDAG----DVKEGLEALLAAAGGRVLVFHNAALDTAFLDYAAKAVFGAPLL----- 148

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +D +          +Q   R  G    +L       G+   NAH+A  D  AT
Sbjct: 149 ----LPTIDTL----LLEKRLLQRQERPIGQGDLRLGACRERYGLTTHNAHNALGDAMAT 200

Query: 185 LALV 188
             L+
Sbjct: 201 AELL 204


>gi|257879256|ref|ZP_05658909.1| exonuclease [Enterococcus faecium 1,230,933]
 gi|257881926|ref|ZP_05661579.1| exonuclease [Enterococcus faecium 1,231,502]
 gi|257886420|ref|ZP_05666073.1| exonuclease [Enterococcus faecium 1,231,501]
 gi|257892035|ref|ZP_05671688.1| exonuclease [Enterococcus faecium 1,231,410]
 gi|257894890|ref|ZP_05674543.1| exonuclease [Enterococcus faecium 1,231,408]
 gi|258617178|ref|ZP_05714948.1| exonuclease [Enterococcus faecium DO]
 gi|260558702|ref|ZP_05830891.1| exonuclease [Enterococcus faecium C68]
 gi|261208809|ref|ZP_05923246.1| exonuclease [Enterococcus faecium TC 6]
 gi|289567393|ref|ZP_06447761.1| exonuclease [Enterococcus faecium D344SRF]
 gi|293554053|ref|ZP_06674651.1| exonuclease [Enterococcus faecium E1039]
 gi|293559453|ref|ZP_06675990.1| exonuclease [Enterococcus faecium E1162]
 gi|293567360|ref|ZP_06678710.1| exonuclease [Enterococcus faecium E1071]
 gi|293571424|ref|ZP_06682452.1| exonuclease [Enterococcus faecium E980]
 gi|294616820|ref|ZP_06696561.1| exonuclease [Enterococcus faecium E1636]
 gi|294620071|ref|ZP_06699426.1| exonuclease [Enterococcus faecium E1679]
 gi|294622945|ref|ZP_06701839.1| exonuclease [Enterococcus faecium U0317]
 gi|257813484|gb|EEV42242.1| exonuclease [Enterococcus faecium 1,230,933]
 gi|257817584|gb|EEV44912.1| exonuclease [Enterococcus faecium 1,231,502]
 gi|257822276|gb|EEV49406.1| exonuclease [Enterococcus faecium 1,231,501]
 gi|257828395|gb|EEV55021.1| exonuclease [Enterococcus faecium 1,231,410]
 gi|257831269|gb|EEV57876.1| exonuclease [Enterococcus faecium 1,231,408]
 gi|260075161|gb|EEW63474.1| exonuclease [Enterococcus faecium C68]
 gi|260077311|gb|EEW65031.1| exonuclease [Enterococcus faecium TC 6]
 gi|289160818|gb|EFD08750.1| exonuclease [Enterococcus faecium D344SRF]
 gi|291589962|gb|EFF21760.1| exonuclease [Enterococcus faecium E1071]
 gi|291590326|gb|EFF22094.1| exonuclease [Enterococcus faecium E1636]
 gi|291593687|gb|EFF25206.1| exonuclease [Enterococcus faecium E1679]
 gi|291597644|gb|EFF28801.1| exonuclease [Enterococcus faecium U0317]
 gi|291601744|gb|EFF31998.1| exonuclease [Enterococcus faecium E1039]
 gi|291606515|gb|EFF35912.1| exonuclease [Enterococcus faecium E1162]
 gi|291608496|gb|EFF37790.1| exonuclease [Enterococcus faecium E980]
          Length = 177

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET             A V V +  + ++           +       V I GI
Sbjct: 2   NFVAMDFETANHQPYSA--CSLALVMV-KNSQIVDEFYTL---IQPETPFFWRNVQIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E  + I  +F      ++  +N  FD                     
Sbjct: 56  HQEDVRNAPK-FPEVWQTIQPYFQKN--RLVVAHNAAFDTKVLA---------------- 96

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + +  Y                 + +L  +     I+  + HDA  D  A
Sbjct: 97  ---GCLDYYHLEQPNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHHHDALEDSRA 153

Query: 184 TLALVWLIREK 194
              ++    +K
Sbjct: 154 CAEILLYQEKK 164


>gi|163816457|ref|ZP_02207821.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC 27759]
 gi|158448157|gb|EDP25152.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC 27759]
          Length = 232

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 24/192 (12%)

Query: 6   VIYDYETFGRDVAL--------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           ++ D E    D           +   +   V ++ ++E+I + ++ + KP  +     + 
Sbjct: 13  IVVDLEMNWLDFKYENERKISTNEVIEIGAVTMNEKFEEIGAFKM-YVKPQFNEKVVKKV 71

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGIT  K     V  A+      ++       ++ Y     D+   R          
Sbjct: 72  EKLTGITMDKLQDSPV-FADAFDAFIKWCISFGEEVVMYGWSDSDELQLRREMKLKNIPW 130

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
                          DV +    +     ++           L       GI+     HD
Sbjct: 131 KE-------------DVDKVFRQWHDFQKEFSDLVGIGRIITLSQAVDYAGIDFAGQKHD 177

Query: 177 AKADVYATLALV 188
           A  D   T  L+
Sbjct: 178 ACCDARNTAYLL 189


>gi|117920025|ref|YP_869217.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3]
 gi|117612357|gb|ABK47811.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3]
          Length = 228

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 44/180 (24%), Gaps = 20/180 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D E  G +   D+      V ++     +   +    +         ++  I GI 
Sbjct: 42  LIAMDLEMTGLNPLQDQILSIGLVPIENGAIPLMGAQQKLVQIQGSV---GQSATIHGIL 98

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    +E   +     F +     ++  ++   D  + +            +    
Sbjct: 99  DNHLTEAVTIEEAMAW----FVAQTRGHVLVAHHSPLDCRFLQQDILS------IYHQAI 148

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D L             +          S +L       G+    AH A  D  A 
Sbjct: 149 VLPAIDTL-------LLEKHRLLREHSVLKEGSLRLGACRERYGLPIYGAHSALTDALAC 201


>gi|229523521|ref|ZP_04412926.1| hypothetical protein VCA_001085 [Vibrio cholerae bv. albensis
           VL426]
 gi|229337102|gb|EEO02119.1| hypothetical protein VCA_001085 [Vibrio cholerae bv. albensis
           VL426]
          Length = 176

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 21/151 (13%)

Query: 1   MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           M  + V+ +D E          T G         +     +D    +I     +F KP  
Sbjct: 1   MNYNRVVCFDLEMCCWNENGVGTTG------EIIEIGLAEIDLAAGEIVKRAQYFVKPEK 54

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           D +       +TGITP+K  + G   AE  + + + F   N     +     DD    N 
Sbjct: 55  DEI-SLFCAELTGITPRKIEKQGRPLAEVIQSMVKNFGGSNKIYASW---GRDDLILLNE 110

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
                       + N  + + +   ++    
Sbjct: 111 CQEKGLSVPFQEFLNLATLYRIQHRLKDKRI 141


>gi|283769033|ref|ZP_06341939.1| exonuclease [Bulleidia extructa W1219]
 gi|283104390|gb|EFC05767.1| exonuclease [Bulleidia extructa W1219]
          Length = 186

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 53/212 (25%), Gaps = 31/212 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               V  D ET               + V       E+        A+    +     + 
Sbjct: 1   MTRVVAVDVET--ASSDHRSMCAIG-LSVLENGVLEEAFYSLIKPAANANHFEYFNTKVH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+          E    I          I+  +N  FD    +N          + +
Sbjct: 58  GIHPKDVQDAP-TLPEVYPTIKSLLESG---IVVAHNAVFDVSVIKNCCLNTGCPVPKVT 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +      +D + + R  +    +              KL  +A    I   + H   +D 
Sbjct: 114 Y------FDSVPLSRRAFPLLVN-------------HKLDTVARYLKIPLDHHHAG-SDA 153

Query: 182 YATLAL----VWLIREKKPKLFEYLYDYRNKN 209
           YA LA+    +        +          K 
Sbjct: 154 YACLAIVAAAMAKYEMCDCETMLNYLKISLKR 185


>gi|123442599|ref|YP_001006576.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089560|emb|CAL12409.1| exodeoxyribonuclease [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 221

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 54/222 (24%), Gaps = 38/222 (17%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET           + A V +    +       F            EA+ I  IT
Sbjct: 3   FRVIDTETTSF---EGSVLEIASVDI-VDGKICNPMSDF---VKPTEAISFEAMAIHHIT 55

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   ++E      I ++    +  I   +N  FD                      
Sbjct: 56  ENMVADAPLIEH----VIDKYL---DADIYVAHNAAFDRE------------------KL 90

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  +  ++           WP    G    +       +  E ++AH A  D Y T
Sbjct: 91  PQITAPWVCTLKLSRKL------WPEGGHGNQYLRYAHGLNPDVPEGLHAHRALYDCYVT 144

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
             L+  +          + +   +  L   +           
Sbjct: 145 AELLLHMNRIARWTVAEMREITKRPSLLHAMAFGKHKGKTFT 186


>gi|331698794|ref|YP_004335033.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190]
 gi|326953483|gb|AEA27180.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190]
          Length = 204

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 16/153 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-----TEVFFCKPA--DDYLP 53
           M +  V  D E  G D+  D   + A +  D     +               A   D + 
Sbjct: 1   MNDRLVWIDCEMTGLDLQRDALIEIAVLVTDGDLNVLGEGVDVVIHADESALAAMPDVVR 60

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY----NNIRFDDYYSRNI 109
           D  A    G+T ++  R  V   E  + +  +        +      N+I  D  +    
Sbjct: 61  DMHARS--GLT-EEVRRSTVTLQEAEQAVLAYVREHVPDPVSAPLAGNSIATDRGFL--A 115

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
                 D++        S    L        F 
Sbjct: 116 RDMPELDAHLHYRMVDVSSIKELCRRWFPRVFY 148


>gi|160882895|ref|ZP_02063898.1| hypothetical protein BACOVA_00857 [Bacteroides ovatus ATCC 8483]
 gi|260173743|ref|ZP_05760155.1| putative DNA polymerase III epsilon chain [Bacteroides sp. D2]
 gi|315922007|ref|ZP_07918247.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156111759|gb|EDO13504.1| hypothetical protein BACOVA_00857 [Bacteroides ovatus ATCC 8483]
 gi|313695882|gb|EFS32717.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 198

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 27/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V    +          +P  +Y        + 
Sbjct: 1   MINFAAIDFET--ANGKRTSVCSVGVVIVRE-GKITNKIY-RLIRPRPNY-YTQWTTAVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T    +       E    I       +   +  +N  FD+        R  ++ Y  +
Sbjct: 56  GLTYDDTMEADE-FPEVWAEIKPLI---DGLPLVAHNSPFDE-----GCLRAVHELYDMT 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + +    +      R                    + +L  +A   G    N H A AD 
Sbjct: 107 YPD----YKFYCTCRTSRKVF---------GKDLPNHQLHTVAERCGYHLENHHHALADA 153

Query: 182 YATLALV 188
            A   + 
Sbjct: 154 EACAQIA 160


>gi|88858891|ref|ZP_01133532.1| oligoribonuclease [Pseudoalteromonas tunicata D2]
 gi|88819117|gb|EAR28931.1| oligoribonuclease [Pseudoalteromonas tunicata D2]
          Length = 181

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + +  D E  G +   D+  + A +  D     +    V     +D+ L   D   V   
Sbjct: 7   NLIWLDLEMTGLEPKTDKILEIATIVTDCDLNILAEGPVIAVHQSDELLDGMDEWCVKQH 66

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +    +  +    E +   +   F           +  N+I  D  +           
Sbjct: 67  GGSGLTARCRQSSFTEQDAIEQTISFLEKWVPKGKSPMCGNSIGQDRRFLNAYMPELEDY 126

Query: 117 SYRW 120
            +  
Sbjct: 127 FHYR 130


>gi|330877336|gb|EGH11485.1| ribonuclease T [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330966675|gb|EGH66935.1| ribonuclease T [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 225

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +   +R +   E T  F  +P      +  A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GI+     A
Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220


>gi|256377108|ref|YP_003100768.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
 gi|255921411|gb|ACU36922.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
           43827]
          Length = 372

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 31/197 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D E         R  + A V  D       +       P +    +P A    GIT 
Sbjct: 94  VVLDTE---LTDFTGRVIEIAVVATDG-----ATLLTSLVDP-EGAQINPYAQRAHGITA 144

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q       +E +   ++          +I +N             +R+ +          
Sbjct: 145 QMLTGAPTLE-QLWPKLDHVLR--GKRVIAWNAPFDLTRL--RAEHRHLFGD------AD 193

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              W     + A+   +       ++  G  + +L              H A+ D  A L
Sbjct: 194 LPDWLTGPWLCAMRKHAAWVGDRNTKGGGFRNHRL-----------EGGHRAEGDCLAAL 242

Query: 186 ALVWLIREKKPKLFEYL 202
           A +  + +  P    + 
Sbjct: 243 AWIKRMADTAPGTEAHA 259


>gi|262201950|ref|YP_003273158.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
 gi|262085297|gb|ACY21265.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
           DSM 43247]
          Length = 194

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 50/189 (26%), Gaps = 13/189 (6%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT--- 61
             D E  G  +  D+  + A +  D     +           DD L         +    
Sbjct: 2   WIDCEMTGLSLESDKLIEIAALVTDGDLNILGEGVDVVIHADDDALANMPDVVTKMHADS 61

Query: 62  GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           G+T ++     V  AE        I    +      +  N+I  D  +          D+
Sbjct: 62  GLT-EEVRASTVTLAEAEKLVLDYIRAHVTTAGAVPLAGNSIATDRGFI--ARDMPELDA 118

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ-WPSRDDGATSFKLQDLALANGIEHVNAHD 176
           Y        S    L        +     +    R        +++L        V A  
Sbjct: 119 YLHYRMVDVSSIKELSRRWYPRIYFGQPEKGLAHRALADIRESIRELRYYRAAAFVPAPG 178

Query: 177 AKADVYATL 185
             AD  AT+
Sbjct: 179 PDADALATI 187


>gi|226326657|ref|ZP_03802175.1| hypothetical protein PROPEN_00510 [Proteus penneri ATCC 35198]
 gi|225204878|gb|EEG87232.1| hypothetical protein PROPEN_00510 [Proteus penneri ATCC 35198]
          Length = 181

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D Q   +  
Sbjct: 6  NNLIWIDLEMTGLDPECDRIIEIATIVTDPQLNILAE 42


>gi|218708963|ref|YP_002416584.1| ribonuclease T [Vibrio splendidus LGP32]
 gi|218321982|emb|CAV17988.1| Ribonuclease T (RNase T) [Vibrio splendidus LGP32]
          Length = 241

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 61/201 (30%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   +  R+D   +    ST  F  +P +    +  A+   G
Sbjct: 47  VVIDVETAGFNAETDALLEICAITLRMDENGDLHPASTLHFHIEPFEGANIEQAALDFNG 106

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E E  + I++        S  +  I+  +N  FD  +      R   
Sbjct: 107 IKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKL 166

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 167 K------RVPFHPFATFDTAALSGLAYGQTV-------------LAKACRTAGMEFDNKE 207

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 208 AHSALYDTQKTTELFCGIVNK 228


>gi|207725335|ref|YP_002255731.1| oligoribonuclease protein [Ralstonia solanacearum MolK2]
 gi|206590571|emb|CAQ37533.1| oligoribonuclease protein [Ralstonia solanacearum MolK2]
          Length = 185

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 7/117 (5%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--ITGIT--PQ 66
           E  G     DR  + A V  D +   +    V     +D+ L   +A      G +    
Sbjct: 2   EMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQSDEILDGMDAWNKGTHGRSGLID 61

Query: 67  KALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           K       EA+    +  F       +   +  N+I  D  +      +     +  
Sbjct: 62  KVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEAYFHYR 118


>gi|90109308|pdb|2F96|A Chain A, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T
           (Ribonuclease T)
 gi|90109309|pdb|2F96|B Chain B, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T
           (Ribonuclease T)
          Length = 224

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 63/200 (31%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A   V  D +         FF  +P +    +P A+  TG
Sbjct: 32  VVVDVETGGFNSATDALLEIAATTVGXDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+++     E  R I +          I+  +N  FD  +      R    
Sbjct: 92  IKLDHPLRXAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
              +      S +D   +    Y  +                 L     A G E  N  A
Sbjct: 152 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGXEFDNREA 192

Query: 175 HDAKADVYATLALVWLIREK 194
           H A+ D   T  L   I  +
Sbjct: 193 HSARYDTEKTAELFCGIVNR 212


>gi|326496743|dbj|BAJ98398.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 27/191 (14%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET        +     +F  + V  R+  ++        +PAD  +    ++  
Sbjct: 26  IAFFDLETS-VPQRAGQGYALLEFGAILVCPRRLVEVACYATL-VRPADLGVVSAASMRC 83

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT            + + + +           G+N +RFD    R  F          
Sbjct: 84  NGITRDAVAAAP-CFRDVADKAYDLL--HGRVWAGHNIVRFDVPRIREAFIEIGRPPPE- 139

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L ++                   A   K+  LA   G+     H +  D
Sbjct: 140 ----PKGMIDTLPLL------------TQRFGRRAGDMKMASLANYFGLGRQK-HRSLDD 182

Query: 181 VYATLALVWLI 191
           V   L ++   
Sbjct: 183 VRMNLEVLKYC 193


>gi|300781342|ref|ZP_07091196.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC
           33030]
 gi|300533049|gb|EFK54110.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC
           33030]
          Length = 194

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 43/184 (23%), Gaps = 17/184 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D ET G             V V      I+ +   +   A   +   ++  + G+T
Sbjct: 22  LLAVDVETTGLKPDKHHLVSIGWVPVTD--RVIDLSGAGYFVLAGASV--GDSATVHGVT 77

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                R+GV          Q                     +        +         
Sbjct: 78  DDDIAREGVDAQVALDAFLQAIE-------------GRALLAHFAQMETGFIDALHKRVY 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G       D +    +     ++  +        +L  +     +     H+A  D  A 
Sbjct: 125 GKRFRLREDEVEDTLSLERRHMERMATYPRGEDLRLARVRSRYNLPDYGNHNALTDALAC 184

Query: 185 LALV 188
             L 
Sbjct: 185 AELY 188


>gi|124268095|ref|YP_001022099.1| oligoribonuclease [Methylibium petroleiphilum PM1]
 gi|124260870|gb|ABM95864.1| putative oligoribonuclease protein [Methylibium petroleiphilum PM1]
          Length = 191

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 7/110 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60
            + +  D E  G D   DR  + A V  D          VF    +D  L   +A     
Sbjct: 16  QNLIWIDLEMTGLDPLNDRIIEIAVVVTDPGLTVRIEGPVFAVHQSDAVLDAMDAWNKGT 75

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYY 105
            G +    +     V EA   R++ +F           +  N+I  D  +
Sbjct: 76  HGRSGLIDRVKASTVDEAAAERQVIEFLKAYVPAGKSPMSGNSICQDRRF 125


>gi|260773225|ref|ZP_05882141.1| ribonuclease T [Vibrio metschnikovii CIP 69.14]
 gi|260612364|gb|EEX37567.1| ribonuclease T [Vibrio metschnikovii CIP 69.14]
          Length = 218

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 63/201 (31%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   +   +D Q +    ST  F  +P +    +  A+   G
Sbjct: 20  VVIDVETAGFNPQTDALLEICAITLCMDEQGDLHPASTLHFHIEPFEGANIEKAALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P  ALR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 80  IHDPFSALRGAVTEEYALKEIYKQVRKEQKAADCSRAIIVAHNASFDHGFVMAANERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L     A G+E  N  
Sbjct: 140 K------RVPFHPFATFDTAALSGLAYGQTV-------------LAKACKAAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T AL   I  K
Sbjct: 181 AHSALYDTQQTAALFCGIINK 201


>gi|15451562|gb|AAK98686.1|AC021893_20 Putative exonuclease [Oryza sativa Japonica Group]
 gi|31432000|gb|AAP53699.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
 gi|222612804|gb|EEE50936.1| hypothetical protein OsJ_31475 [Oryza sativa Japonica Group]
          Length = 436

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 57/193 (29%), Gaps = 28/193 (14%)

Query: 5   FVIYDYETF---GRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET    G      R   +F  + +  +  ++    V   +P+D  +   EA+  
Sbjct: 23  IAFFDVETSMPWG--PRERRTLLEFGSIFLCPRLVEVAEPFVTLVRPSDLGVVT-EALER 79

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT            + +  IH           G+N I FD    R  F          
Sbjct: 80  KGITRGALEDAP-PFCDVADNIHNVL--HGRIWAGHNIISFDSEIIREAFAEIGRSPPE- 135

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L ++              +    A + K+ +LA    +     H +  D
Sbjct: 136 ----PKGMIDTLPLL------------TQTFGRRAGNMKMANLADYFNLGP-QIHRSLYD 178

Query: 181 VYATLALVWLIRE 193
           V   L ++     
Sbjct: 179 VRMNLDVLKCCST 191


>gi|256827080|ref|YP_003151039.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Cryptobacterium curtum DSM 15641]
 gi|256583223|gb|ACU94357.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Cryptobacterium curtum DSM 15641]
          Length = 325

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 42/184 (22%), Gaps = 14/184 (7%)

Query: 8   YDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            D ET GR     R        V++    +   +   +   PA           I GIT 
Sbjct: 137 VDLETTGRAPDRGRIINVGWEYVKLAEGEKPFGACAAWCGLPAQYEETGVPLTEIHGITW 196

Query: 66  QKALRDGVV--EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                      +++    + Q         + +N    D             +   ++  
Sbjct: 197 DDIADRPQFRDDSDLQASLLQALEAFP--YLAHNAAFEDA--------WLLLNLNGYAEG 246

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R   +D         P+    P     A+             +    H    D   
Sbjct: 247 RKAGRIVPVDTRDICRQLDPEVRYLPHESRPASLESWARRRKTLSADEDERHLGLDDTDL 306

Query: 184 TLAL 187
            L  
Sbjct: 307 MLRT 310


>gi|104783881|ref|YP_610379.1| oligoribonuclease [Pseudomonas entomophila L48]
 gi|122401621|sp|Q1I440|ORN_PSEE4 RecName: Full=Oligoribonuclease
 gi|95112868|emb|CAK17596.1| oligoribonuclease (3'->5' exoribonuclease) [Pseudomonas entomophila
           L48]
          Length = 180

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +   F           I  N+I  D  +         
Sbjct: 64  THGNSGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRGLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|229588067|ref|YP_002870186.1| oligoribonuclease [Pseudomonas fluorescens SBW25]
 gi|312958644|ref|ZP_07773164.1| exonuclease [Pseudomonas fluorescens WH6]
 gi|229359933|emb|CAY46787.1| oligoribonuclease [Pseudomonas fluorescens SBW25]
 gi|311287187|gb|EFQ65748.1| exonuclease [Pseudomonas fluorescens WH6]
          Length = 180

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 32/126 (25%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G +   D   + A +  D     +    V     +D  L   D     
Sbjct: 4   PQNLIWIDLEMTGLNPDTDVIIEMATIVTDSNLNTLAEGPVIAIHHSDAVLATMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  AE       F           I  N+I  D  +         
Sbjct: 64  THGNSGLTQRVRDSRISMAEAEAETIAFLEKWVPKGKSPICGNSICQDRRFLYTHMKGLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 SYFHYR 129


>gi|331701662|ref|YP_004398621.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129005|gb|AEB73558.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri
           NRRL B-30929]
          Length = 177

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +         A   V    +              +       + + GI
Sbjct: 2   NFVAMDFET--ANAKRASACSIALAIVRDN-QITNEFYSL---INPEMDFSWRNINVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +  +       E  R I   FS     ++  +N  FD+   +    R         ++
Sbjct: 56  HERDVVDAP-TFPEVWRHIQPLFSANK--LVIAHNASFDNSVLKRTLER---------YE 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  LD +R    F P               KL  L     I   + H+A  D  A
Sbjct: 104 VQPPHYLTLDTLRTSKQFYPTLEN----------HKLNTLCDKLNIVLKHHHNALDDSVA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CANIL 158


>gi|119961384|ref|YP_948135.1| oligoribonuclease [Arthrobacter aurescens TC1]
 gi|119948243|gb|ABM07154.1| putative oligoribonuclease [Arthrobacter aurescens TC1]
          Length = 211

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 59/213 (27%), Gaps = 40/213 (18%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD------------- 49
              V  D E  G D+  D   + A +  D +   +        KP D             
Sbjct: 6   ERIVWIDCEMTGLDLTNDALIEVAALVTDSELNILGDGVDVVIKPDDAALEQMNDFVRDM 65

Query: 50  -------DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
                  D LP        G T  +A      EA+    I ++   P    +G N++  D
Sbjct: 66  HTRSKLLDELP-------HGKTMAEA------EAQVLEYIEKWVPDPRKAPLGGNSVGTD 112

Query: 103 DYYSRNIF-----YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGA 155
             +          + ++      +    + RW      ++                 D  
Sbjct: 113 RMFLARDMPNIVEHLHYRVIDVSTIKELSRRWFPRAYFQSPAKHGGHRALGDIKDSIDEL 172

Query: 156 TSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
             ++      A G +   A     D+ AT  ++
Sbjct: 173 RYYRQAVFVPAPGPDTATAQRISKDIIATAEVL 205


>gi|149197350|ref|ZP_01874401.1| DNA polymerase III [Lentisphaera araneosa HTCC2155]
 gi|149139368|gb|EDM27770.1| DNA polymerase III [Lentisphaera araneosa HTCC2155]
          Length = 210

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 30/188 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITGI 63
           +V+ D E  G     D+    A V++ +   +I+S E F+     +      E + I  +
Sbjct: 30  YVVIDCEMTGLKPKQDKLLSIAAVKISQG--RIQSQESFYRVIFQEKQKLRDETILIHRL 87

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             ++        ++    + +F      CI   +    D  +   +    F   +     
Sbjct: 88  NHEQISTG----SDQIAVLKEFSDFCQNCIPVGHFFDIDLSFLNPVMPLPFLYPH----- 138

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   +++ +                 +S +L +L     +    AH+A  D  +
Sbjct: 139 -----LDTRLLVKTLQPC-------------PSSIQLNELCDFYNLPSFEAHNALGDATS 180

Query: 184 TLALVWLI 191
           T  L   I
Sbjct: 181 TACLFLKI 188


>gi|270261380|ref|ZP_06189653.1| exodeoxyribonuclease X [Serratia odorifera 4Rx13]
 gi|270044864|gb|EFA17955.1| exodeoxyribonuclease X [Serratia odorifera 4Rx13]
          Length = 222

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 56/216 (25%), Gaps = 38/216 (17%)

Query: 7   IYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + D ET G D       + A V  +D     I +        + D     +A+ I  IT 
Sbjct: 5   VIDTETCGLD---GGVVEVASVDLIDDH---IANPMSDLV--SPDRPISIDAMAIHHITE 56

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q            +  I ++     +     +N  FD                       
Sbjct: 57  QMVEGKPR----IAVAIGRYL---GSPYYVAHNAAFDRGV------------------LP 91

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
             R   +  M+      PD        +    + L           +  H A  D Y T 
Sbjct: 92  EMRGAWICTMKLARTLYPDI----KYGNQYLRYALNLEVQLPQDTTLYPHRALYDCYVTA 147

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           AL+  I +      E +     +  L K        
Sbjct: 148 ALLQRIVKDSGWTPEQMAQITEQPVLLKKFKFGKYR 183


>gi|184154853|ref|YP_001843193.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260663117|ref|ZP_05864009.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226197|dbj|BAG26713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552309|gb|EEX25360.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 179

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 53/191 (27%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET             A + + R  +  +            +  +     + GI
Sbjct: 2   NFIAMDFET--ASAKRFSACSLA-ITIVRNSQIQDEFYTLINPQTPFFWRN---TQVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E    I +FF+ P+  +I +N    +      + +         +  
Sbjct: 56  HERDVKDAP-TFPEVWEHIQEFFT-PDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQT-- 111

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L   R                    + KL  +     I+  + H+A  D +A
Sbjct: 112 -----LDTLKTSR-------------QLFPAFPNHKLNTICDQLNIDLHHHHNALDDAHA 153

Query: 184 TLALVWLIREK 194
              ++      
Sbjct: 154 CANILLYQANH 164


>gi|149190366|ref|ZP_01868638.1| ribonuclease T [Vibrio shilonii AK1]
 gi|148835745|gb|EDL52710.1| ribonuclease T [Vibrio shilonii AK1]
          Length = 241

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 59/199 (29%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   +   +D Q      S   F  +P +    + EA+  TG
Sbjct: 44  VVVDVETAGFNAKTDALLEICAITLTMDDQGNLQPASVLHFHIEPFEGANLEKEALEFTG 103

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E E  + I++           +  I+  +N  FD  +      R   
Sbjct: 104 IRDPFSPLRGAVSEQEALKEIYKVIRKEQKQHDCSRAIMVAHNANFDHSFVSAANERAKL 163

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                     A     ++  AH
Sbjct: 164 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------AAGMEFDNREAH 206

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  K
Sbjct: 207 SALYDTQKTAELFCRIVNK 225


>gi|170723851|ref|YP_001751539.1| oligoribonuclease [Pseudomonas putida W619]
 gi|169761854|gb|ACA75170.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
          Length = 180

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +   F           I  N+I  D  +         
Sbjct: 64  THGGSGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRSLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|38638095|ref|NP_943205.1| hypothetical protein pEL60p06 [Erwinia amylovora]
 gi|37681993|gb|AAQ97880.1| ORF6 [Erwinia amylovora]
          Length = 282

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 46/190 (24%), Gaps = 24/190 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G         +      D     I     F  +       + +A  + GI  
Sbjct: 105 LFLDTETTGLG-NTAEALEIG--LTDAAGRVI-----FETRLKPTVAIEAQAAAVHGIDE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      + + ++           +   N  FD    +     +   +        
Sbjct: 157 PALSGAP-SWPDVALQLRHAI---GARPVIIFNAPFDTRILKQTAAAHGDPA-------- 204

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D L  +    A       + + +   T       + A       AH A AD   T 
Sbjct: 205 ----DWLGELTVYCAMELAAGYFGATNRYGTISLASAASQAALTWEGEAHSAIADARMTA 260

Query: 186 ALVWLIREKK 195
            +V  I    
Sbjct: 261 GVVNAIAAYH 270


>gi|330720662|gb|EGG98910.1| 3'-to-5' oligoribonuclease (orn) [gamma proteobacterium IMCC2047]
          Length = 182

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +H +  D E  G +   D   + A +  D     I    VF    + + +   D      
Sbjct: 5   DHLIWVDLEMTGLEPDHDTIIEIATIVTDSDLNVIAEGPVFAIHQSAETMAGMDEWNTNQ 64

Query: 61  TGIT--PQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            G +   Q+ L   V     EAE    + Q+        +  N+I  D  +      +  
Sbjct: 65  HGGSGLTQRVLDSDVSMEQAEAETIAWLEQYVE-AGKSPMCGNSIGQDRRFMVKYMPKLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 VFFHYR 129


>gi|119491524|ref|XP_001263283.1| RNA exonuclease Rex2, putative [Neosartorya fischeri NRRL 181]
 gi|119411443|gb|EAW21386.1| RNA exonuclease Rex2, putative [Neosartorya fischeri NRRL 181]
          Length = 188

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 11/129 (8%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP----DPEA 57
           T+  V  D E  G +   D   Q      D     ++  E F      D        P  
Sbjct: 7   TDPLVWIDCEMTGLNPETDTILQICCYITDANLNLLD-PEGFETIIRHDRSVLDSMSPWC 65

Query: 58  VFIT---GITPQKALRDGVVEAEFSRR---IHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           V      G+T           A  +     I ++   P T ++  N++  D  +     Y
Sbjct: 66  VDTHGRTGLTAAVLASTTNPAAAAASLLAYIQRYVPRPRTALLAGNSVHADKMFLAKEPY 125

Query: 112 RNFYDSYRW 120
           +   +   +
Sbjct: 126 KAVLEWLHY 134


>gi|29346841|ref|NP_810344.1| putative DNA polymerase III epsilon chain [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298386512|ref|ZP_06996068.1| exonuclease [Bacteroides sp. 1_1_14]
 gi|29338738|gb|AAO76538.1| putative DNA polymerase III epsilon chain [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298260889|gb|EFI03757.1| exonuclease [Bacteroides sp. 1_1_14]
          Length = 180

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 52/187 (27%), Gaps = 27/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V R  + ++       +P  +Y        + 
Sbjct: 1   MKDFAAIDFET--ANGKRTSVCSVGVVIV-RNGKIVKKIY-RLIRPCPNY-YTQWTTAVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T            +    I       +   +  +N  FD+        +  ++ Y  +
Sbjct: 56  GLTYADTEEA-EDFPDVWAEIKPLI---DGLPLVAHNSPFDE-----GCLKAVHELYEMT 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + N    +      R                    + +L  +A   G +  N H A AD 
Sbjct: 107 YPN----YKFYCTCRTSRKVF---------GKELPNHQLHTVAARCGYDLTNHHHALADA 153

Query: 182 YATLALV 188
            A   + 
Sbjct: 154 EACAQIA 160


>gi|296170420|ref|ZP_06852008.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894891|gb|EFG74612.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 215

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 43/155 (27%), Gaps = 20/155 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M +  V  D E  G D+  D+  + A +  D     +          ADD         +
Sbjct: 1   MRDELVWIDCEMTGLDLGTDKLIEIAALVTDADLNILGDGVDVVIH-ADDAALSSMIDVV 59

Query: 61  TGITPQKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
           T    +   R G++             EA     + Q    P T  +  N+I  D  +  
Sbjct: 60  T----EMHSRSGLIDEVRASTVDLATAEAMVLDYVGQHVKQPKTAPLAGNSIATDRAFI- 114

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
                   DS+        S    L        + 
Sbjct: 115 -ARDMPALDSFLHYRMIDVSSIKELCRRWYPRIYF 148


>gi|255576154|ref|XP_002528971.1| exonuclease, putative [Ricinus communis]
 gi|223531561|gb|EEF33390.1| exonuclease, putative [Ricinus communis]
          Length = 194

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 53/183 (28%), Gaps = 7/183 (3%)

Query: 5   FVIYDYETFGRDVALDR--PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            V +D ET   + A  R    +F  + V  R+  +IES      +P D  +    +    
Sbjct: 15  IVFFDLETTVPNRAGGRFWVLEFGAIIVCPRKLVEIESYTTLI-RPKDLSVVALRSGRSG 73

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT          E E S +I+   +       G+N  RFD    +  F     D     
Sbjct: 74  GITRNAVADAPAFE-EVSDKIYSILN--GRIWAGHNIRRFDCIRIKEAFAELGKDPPVPV 130

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
               +         R         +             L D+ + +            + 
Sbjct: 131 GMIDSLGVLSQKFGRRAGNLKMATLADYFGLGQQKHRSLDDVRIKSSNSIEWQMAQLFNS 190

Query: 182 YAT 184
           Y T
Sbjct: 191 YYT 193


>gi|77456743|ref|YP_346248.1| oligoribonuclease [Pseudomonas fluorescens Pf0-1]
 gi|123606183|sp|Q3KIZ7|ORN_PSEPF RecName: Full=Oligoribonuclease
 gi|77380746|gb|ABA72259.1| oligoribonuclease [Pseudomonas fluorescens Pf0-1]
          Length = 180

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 33/126 (26%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D     +    V     +D+ L   D     
Sbjct: 4   PQNLIWIDLEMTGLDPENDVIIEMATIVTDSDLNTLAEGPVIAIHHSDEVLARMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE       F           I  N+I  D  +         
Sbjct: 64  THGNSGLTQRVRESRVSMAEAEAETIAFLEQWVPKGKSPICGNSICQDRRFLYTHMKALE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 SYFHYR 129


>gi|28572517|ref|NP_789297.1| oligoribonuclease [Tropheryma whipplei TW08/27]
 gi|81839179|sp|Q83HW9|ORN_TROW8 RecName: Full=Oligoribonuclease
 gi|28410649|emb|CAD67035.1| oligoribonuclease [Tropheryma whipplei TW08/27]
          Length = 184

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 15/117 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV--- 58
            +H V  D E  G +   D   + A +  D+    ++        P+ + L    A+   
Sbjct: 7   PSHLVWVDCEMTGLNPERDELLEVAVIVTDKDLLPLDEGVNVVVSPSSEAL---GAMDNY 63

Query: 59  -----FITGITPQKALRDGVVEAEFSRR--IHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                 ++G+  + +    V EA+   +  I +        I+  N+I  D  +   
Sbjct: 64  VARMHRVSGLLDELSNGVPVSEAQAMVKEYITKHIKTGG--IMSGNSIATDRLFITR 118


>gi|255021393|ref|ZP_05293441.1| Exodeoxyribonuclease X [Acidithiobacillus caldus ATCC 51756]
 gi|254969256|gb|EET26770.1| Exodeoxyribonuclease X [Acidithiobacillus caldus ATCC 51756]
          Length = 220

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 66/221 (29%), Gaps = 41/221 (18%)

Query: 6   VIYDYETFGRDVALDRP----AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +I+D ET G      R      + A +RV  +   +   E F  +       +  A+ + 
Sbjct: 4   LIFDTETTG------RIAPELIEAAWLRV-GELRTLAVEEEFVRRYRPSKPIEMGAMAVH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I  +                 +F    +T  +  ++I +D                   
Sbjct: 57  HILDEDLEDCPPA--------SEFSLPADTEYLIGHSIDYDWEVIG-------------- 94

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                 R     + R ++       Q       +   +             NAH A ADV
Sbjct: 95  -KPEVKRICTFAMSRKLWPEVDSHSQSALLFYFSKDRRKTR------DNLKNAHSALADV 147

Query: 182 YAT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
               + L  ++   +P  +E L+++  + ++ + +      
Sbjct: 148 KFCRIILNRILLAVRPASWEALWEFSERARIPETMPFGKHR 188


>gi|220913055|ref|YP_002488364.1| exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
 gi|219859933|gb|ACL40275.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 336

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 52/189 (27%), Gaps = 29/189 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F   D+ET   +     P      +V R  + +E        PA     D   V I
Sbjct: 1   MGLDFTAIDFET--ANGFRGSPCAVGLTKV-RGGKVVEEAAWLMRPPAGHDHFDYHNVRI 57

Query: 61  TGITPQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            GIT       G     +    I  F       ++  +N  FD    R+    +      
Sbjct: 58  HGITAADV--AGRSRFGDLFPEIGAFI---GDDVLAAHNAAFDLGVIRSALEVSGLP--- 109

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                    +D +  +                     S  L   A   G+  +  HDA  
Sbjct: 110 ------GPAYDYVCTVMLSRRCY-----------SLVSNSLPFAAEEAGVPLLRHHDAAE 152

Query: 180 DVYATLALV 188
           D  A   ++
Sbjct: 153 DARACAGIL 161


>gi|268679542|ref|YP_003303973.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617573|gb|ACZ11938.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 292

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 65/195 (33%), Gaps = 21/195 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             ++ D ET G     DR  Q A   V  +  ++E      C+P    +   EA+ +  I
Sbjct: 2   KIILLDTETTGI-YEKDRICQLAF-LVLNEELEVEEIHNDLCQPP--VMISYEAMAVHHI 57

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TP++   +       + +     + P   ++ +N         +                
Sbjct: 58  TPERVAHEVSCIQTRAYQRLLELNTPYNLLVIHNASFDLTMLEKE--------------- 102

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKADV 181
              S+ +L+D  R + A+ P+   +  +        +  +          + AHDA  DV
Sbjct: 103 GFVSQMNLVDTFRILRAYYPNEGSFSLQYKRYQWGLYHQEATFQKKHTVSIEAHDALGDV 162

Query: 182 YATLALVWLIREKKP 196
                L   + E+  
Sbjct: 163 VVLKHLFEKLCEEHS 177


>gi|70734062|ref|YP_257702.1| oligoribonuclease [Pseudomonas fluorescens Pf-5]
 gi|85542915|sp|Q4KJ81|ORN_PSEF5 RecName: Full=Oligoribonuclease
 gi|68348361|gb|AAY95967.1| oligoribonuclease [Pseudomonas fluorescens Pf-5]
          Length = 180

 Score = 55.2 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G +   D   + A +  D     +    V     +D+ L   D     
Sbjct: 4   PQNLIWIDLEMTGLNPDTDVIIEMATIVTDSNLNTLAEGPVIAIHQSDEILAGMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  AE   +   F           I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESRISMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMKALE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 SYFHYR 129


>gi|269123524|ref|YP_003306101.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
 gi|268314850|gb|ACZ01224.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
          Length = 205

 Score = 55.2 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 73/209 (34%), Gaps = 35/209 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDP 55
           M    + +D ET G +   D     + ++V          K+   + F+ +  +   P+ 
Sbjct: 1   MIKKVIFFDVETNGVNP-TDSVLSISAMKVTYDTITNKMVKLGEFDRFYFR-NEGEEPNF 58

Query: 56  EAVFITGITPQKA-LRDGVVEAEFSRRIHQ----FFSVPNTC-IIGYNNIRFDDYYSRNI 109
           +A+ + G+   +   R  +   ++++  ++    FF   +       +NIRFD       
Sbjct: 59  DALNVNGLFDDEIERRRNLSLIKYAKTFNEDIVNFFEFCDNAEHFVAHNIRFD------- 111

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
             R F         +     + +D+++          +WP         KL + A    I
Sbjct: 112 --RQFIPFKLKYQFDTM--LENIDIVKIPSNSYYSSFKWP---------KLMECANYYNI 158

Query: 170 EHVNA--HDAKADVYATLALVWLIREKKP 196
                  H++  DV     +++ + +   
Sbjct: 159 PVDENELHNSMYDVVIMGRVMFKMLKDNE 187


>gi|92113396|ref|YP_573324.1| oligoribonuclease [Chromohalobacter salexigens DSM 3043]
 gi|91796486|gb|ABE58625.1| Exonuclease [Chromohalobacter salexigens DSM 3043]
          Length = 187

 Score = 55.2 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 46/169 (27%), Gaps = 9/169 (5%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62
            V  D E  G D   +R  + A +  D     +    V      D  L   D       G
Sbjct: 14  LVWIDLEMTGLDPQRERIIEVATLITDNDLNLVAEGPVLAVHQPDALLAGMDEWNTRTHG 73

Query: 63  IT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            +   Q+     +  AE  R+   F      PN+  +  N++  D  +            
Sbjct: 74  DSGLTQRVRESRIDTAEAERQTLAFLKRYVTPNSSPMCGNSVHQDRRFLVREMPE--LAD 131

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
           +    +   S    L       A      +   +        L +LA  
Sbjct: 132 FFHYRNLDVSTLKELAKRWNPQALEGFEKRNTHQAMDDIRESLAELAHY 180


>gi|54023254|ref|YP_117496.1| oligoribonuclease [Nocardia farcinica IFM 10152]
 gi|59797997|sp|Q5Z0A9|ORN_NOCFA RecName: Full=Oligoribonuclease
 gi|54014762|dbj|BAD56132.1| putative oligoribonuclease [Nocardia farcinica IFM 10152]
          Length = 216

 Score = 55.2 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 13/152 (8%)

Query: 1   MTNHFVIY-DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEA 57
           M++  V++ D E  G  +  D+  + + +  D     +           D  L    P  
Sbjct: 1   MSDKLVVWMDCEMTGLRLDSDKLIEVSALVTDSDLNILGDGVDIVIHADDAALAAMPPVV 60

Query: 58  VFIT---GITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
             +    G+T +   R  V     E +    I Q+   P T  +  N+I  D  +     
Sbjct: 61  AEMHARSGLTDE-VRRSTVTVAEAEQQVLDYIRQYVPTPRTVPLAGNSIATDRAFI--AR 117

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
                D++        S    L        + 
Sbjct: 118 DMPALDAHLHYRMIDVSSIKELCRRWYPRIYF 149


>gi|315037938|ref|YP_004031506.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112]
 gi|312276071|gb|ADQ58711.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112]
          Length = 177

 Score = 55.2 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 56/185 (30%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   +     A V V R  E ++               D   + +  I
Sbjct: 2   NFIAMDFET--ANHYPESACSLALVMV-RNTEIVDRFYTV---INPQMPFDARNIQVHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE   +I          ++  +N RFD    R    R           
Sbjct: 56  TAEDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNARFDTNVMRQSLARY---------- 102

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    ++    Y            +    + KL  ++ A  +E  + H+A +D  A
Sbjct: 103 ---------NISEPHYLVIDTLTTSKRFEPELPNHKLDTVSDALDVELWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CAGIL 158


>gi|303240841|ref|ZP_07327353.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
 gi|302591569|gb|EFL61305.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
          Length = 182

 Score = 55.2 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 5/110 (4%)

Query: 4   HFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +++I+D E               +   V+++ + E +++   F  KPA   +     + +
Sbjct: 2   NYIIFDLEATCWENDKSKTSEIIEIGAVKLNDRLEVVDTFSKFI-KPAIYPVLSDFCIRL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
           T I  +       +          + +  +T +   +   +D        
Sbjct: 61  TSIEQKDVDTAD-IFKNVMVEFENWITSSDTEVALCSWGFYDKKQIYKEC 109


>gi|119776164|ref|YP_928904.1| oligoribonuclease [Shewanella amazonensis SB2B]
 gi|166216584|sp|A1SA28|ORN_SHEAM RecName: Full=Oligoribonuclease
 gi|119768664|gb|ABM01235.1| oligoribonuclease [Shewanella amazonensis SB2B]
          Length = 181

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 20/144 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPD 54
            + +  D E  G +  +DR  + A +  D+            I  ++       D     
Sbjct: 6   KNLIWIDLEMTGLEPEVDRILEIATLVTDQDLNILAQGPVIAIHQSDEVLAAMDDWNQQH 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN--- 108
             A  +     ++       EA+   +   F S+        +  N++  D  +      
Sbjct: 66  HGASGL----IERVRSSQYTEADAIAQTIDFLSLHVPKGVSPMCGNSVGQDRRFLNKYMR 121

Query: 109 --IFYRNFYDSYRWSWDNGNSRWD 130
               + ++ +    +      RWD
Sbjct: 122 ELEDFFHYRNIDVSTIKELVKRWD 145


>gi|330807223|ref|YP_004351685.1| Oligoribonuclease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327375331|gb|AEA66681.1| Oligoribonuclease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 180

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G +   D   + A +  D     +    V     +D+ L   D     
Sbjct: 4   PQNLIWIDLEMTGLNPDTDVIIEMATIVTDSDLNTLAEGPVIAIHHSDEILAGMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  AE   +   F           I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESKISMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYTHMKSLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 SYFHYR 129


>gi|15889361|ref|NP_355042.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str.
           C58]
 gi|15157207|gb|AAK87827.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str.
           C58]
          Length = 202

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 50/179 (27%), Gaps = 30/179 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                I D+ET   +             +    + +   E    +P  D    P  + + 
Sbjct: 1   MKTIAI-DFET--ANEERGSACSVGLAWI-EDGQIV-RVEERLIRPR-DMRFSPFNIAVH 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+          EF   + +F    +   +  +N  FD    R  F           
Sbjct: 55  GIRPRDVEDAP----EFPEVMEEFIDDFHGATMIAHNAAFDFSVMRASFD---------K 101

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +         L  ++      P             S KL  +A    +  V+ H+A  D
Sbjct: 102 YRLSYPDLSYLCSVKIARHVWPHL----------VSHKLNVIAHHLQLRFVH-HNAAED 149


>gi|330811344|ref|YP_004355806.1| ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379452|gb|AEA70802.1| Ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 225

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 26/205 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A   + +D +     + T  F  +P +    +  A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPDHTYFFRVEPFEGANVEAAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          I+  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L  +       +                     A     +   AH 
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQ-----------------AADIDFDGREAHS 195

Query: 177 AKADVYATLALVWLIREKKPKLFEY 201
           A+ D   T  L   I  +  ++  +
Sbjct: 196 ARYDTEKTAELFCGIVNRWKEMGGW 220


>gi|313497913|gb|ADR59279.1| Exonuclease [Pseudomonas putida BIRD-1]
          Length = 183

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 47/187 (25%), Gaps = 21/187 (11%)

Query: 6   VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D E T   G     +    +     V R+  +++  +  F KP       P    +T
Sbjct: 5   LVIDLEATTDDGGWPVTEMEVIEIGASLVTREGREVDHFQ-RFVKPRRRPQLTPFCRELT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I+            E      ++         G++  +      +       YD  +  
Sbjct: 64  HISQADVDSA-APFREVWASFERWL--------GHHRGQL-----QAWVSWGDYDRQQLH 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
            +      D L              +               LA  +       H A  D 
Sbjct: 110 QEWQQHSLDSLLRTLPHINLKQRFAKARHLQRPTGLNGALQLAGMHFC--GQQHRALEDA 167

Query: 182 YATLALV 188
             T  L+
Sbjct: 168 RNTARLL 174


>gi|322691183|ref|YP_004220753.1| hypothetical protein BLLJ_0994 [Bifidobacterium longum subsp.
          longum JCM 1217]
 gi|320456039|dbj|BAJ66661.1| hypothetical protein BLLJ_0994 [Bifidobacterium longum subsp.
          longum JCM 1217]
          Length = 185

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 4/59 (6%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITG 62
           +  D ET G D   D   +   +      + ++            +  P      + G
Sbjct: 13 LLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVHW---EGKPSEFIQGMHG 68


>gi|255633388|gb|ACU17051.1| unknown [Glycine max]
          Length = 242

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G ++ +DR  + A +  D             I  T+    +  +       
Sbjct: 61  LVWIDLEMTGLNIEVDRILEIACIITDGNLTKTVESPDLVIHQTKECLDRMGEWCQSHHA 120

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSV-----PNTCIIGYNNIRFDDYYSRN 108
           A  +T     K L+  + E E   ++ +F          T  +  N+I  D  + + 
Sbjct: 121 ASGLTK----KVLKSTISEGEAEEQVIEFVKRYVNVGSYTPHLAGNSIYVDFQFLKK 173


>gi|332845432|ref|XP_003315044.1| PREDICTED: ERI1 exoribonuclease 2 isoform 2 [Pan troglodytes]
          Length = 279

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +I+S    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+     N       +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSASEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|303257152|ref|ZP_07343166.1| oligoribonuclease [Burkholderiales bacterium 1_1_47]
 gi|302860643|gb|EFL83720.1| oligoribonuclease [Burkholderiales bacterium 1_1_47]
          Length = 180

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 9/163 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60
           N+ +  D E  G +  ++R  + A V  D Q   I    V         L + ++     
Sbjct: 5   NNLIWMDLEMTGLEPQINRILEMAAVITDPQLNVIAEGPVVAIHQDASILSNMDSWNTAT 64

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+   + L   V E E ++    FFS         +  N+I  D  +      R  
Sbjct: 65  HTRSGLVN-RCLESKVTEDEAAQIFIDFFSKYVPAGKSPLCGNSIGQDRRFMARWTPRLE 123

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
              +  + D  + +  +      +        +  +  D   S
Sbjct: 124 QFFHYRNLDVSSFKECVKRWAPEVMKKYQKTSRHEALSDIYDS 166


>gi|239629146|ref|ZP_04672177.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519292|gb|EEQ59158.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 315

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 64/241 (26%), Gaps = 31/241 (12%)

Query: 4   HFVIYDYETFGRDVA--LD-------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           ++++ D E + +      D          +   V +D Q+           KP       
Sbjct: 2   NYIVLDLE-WNQSPNGKEDSVEHLPFEIIEIGAVMLDHQFRAAGEFHKLI-KPQVYKKMH 59

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +   +T +  +K  ++G       +    +    +     + +             RN 
Sbjct: 60  FKISEVTHMDMKKLCQEGQPFKAVMQEFLDWCGEGDFRFCTWGS------MDLTELQRNM 113

Query: 115 YDS-YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                   +      +D+  +    Y             DG     L       G+    
Sbjct: 114 IYHKMEIPFPRPLLYYDIQKLYCLQY------------GDGKNKVSLDQAVQLQGMAEDR 161

Query: 174 A-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA 232
             H A  D Y T  ++ ++  +K  ++  +  Y           +        VS  F +
Sbjct: 162 PFHRALDDAYYTGKILSVLDMEKYGVYVSVDYYGLPETKENEYRLFFPEYTKFVSREFNS 221

Query: 233 S 233
            
Sbjct: 222 R 222


>gi|182417780|ref|ZP_02949096.1| putative exonuclease [Clostridium butyricum 5521]
 gi|237667945|ref|ZP_04527929.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378504|gb|EDT76035.1| putative exonuclease [Clostridium butyricum 5521]
 gi|237656293|gb|EEP53849.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 975

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 44/160 (27%), Gaps = 13/160 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +  D ET G D       +   ++       I + E          +P       TG
Sbjct: 10  DNVIYLDIETTGLDETSSEIIEIGAIKFKD--NTITTFETLIR--PRGRVPIGIYNLCTG 65

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ++ ++              + QF        +  +N  F+  +     +R      + + 
Sbjct: 66  LSKEELYSAP-SLGNVRESLSQFLED---LPLICHNGNFEKKF-----FRYHLPQIKNTI 116

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            +      +L+     Y  +         +       L D
Sbjct: 117 MDSMELAAILEPYHKEYNLNALMKTVTDMNKNEIHRGLDD 156


>gi|218505680|ref|NP_001136197.1| ERI1 exoribonuclease 2 isoform 1 [Homo sapiens]
 gi|190359336|sp|A8K979|ERI2_HUMAN RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
           domain-containing protein 1
 gi|119587241|gb|EAW66837.1| similar to RIKEN cDNA 4933424N09 gene, isoform CRA_b [Homo sapiens]
          Length = 691

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +I+S    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+     N       +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|54310468|ref|YP_131488.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914911|emb|CAG21686.1| putative DNA polymerase III, epsilon subunit [Photobacterium
           profundum SS9]
          Length = 207

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 20/193 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  V  D ET   D         A   +  +  +I +++            D  ++ I  
Sbjct: 28  DELVSVDCETTSLDPHSAELVTIAATVI--KNNRILTSKSIHLTLRAPISLDANSITIHR 85

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  Q     G+ E E    +  F    N  ++GY+         R       +       
Sbjct: 86  IRHQDLR-AGLGEKEALTTLLNFI--GNRPLVGYHIRYDKTILDRYYRRLFGFALPNKLV 142

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +  +   D L+ +     +                  L+ ++   G+     HDA  D  
Sbjct: 143 EVSHLYHDRLERLLPNAYY---------------DLSLEAISRHLGLPVPERHDALEDTI 187

Query: 183 ATLALVWLIREKK 195
               +   ++   
Sbjct: 188 TAALIYVRLKHGD 200


>gi|26991580|ref|NP_747005.1| oligoribonuclease [Pseudomonas putida KT2440]
 gi|148549980|ref|YP_001270082.1| oligoribonuclease [Pseudomonas putida F1]
 gi|37999402|sp|Q88DC5|ORN_PSEPK RecName: Full=Oligoribonuclease
 gi|166216581|sp|A5W9T8|ORN_PSEP1 RecName: Full=Oligoribonuclease
 gi|24986668|gb|AAN70469.1|AE016688_8 oligoribonuclease [Pseudomonas putida KT2440]
 gi|148514038|gb|ABQ80898.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1]
 gi|313500881|gb|ADR62247.1| Orn [Pseudomonas putida BIRD-1]
          Length = 180

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +   F           I  N+I  D  +         
Sbjct: 64  THGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRNLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|329937943|ref|ZP_08287425.1| oligoribonuclease [Streptomyces griseoaurantiacus M045]
 gi|329302900|gb|EGG46789.1| oligoribonuclease [Streptomyces griseoaurantiacus M045]
          Length = 200

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 61/200 (30%), Gaps = 33/200 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  ++ D   + A +  D +   +        +P D+ L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLSSDALIEVAALVTDSELNVLGEGVDIVIRPPDEALETMPEVVR 60

Query: 60  -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            +    G+  + A    + +AE      + +    P    +  N++  D  +        
Sbjct: 61  EMHTSSGLLSELASGTTMADAEERVLAYVREHVKEPRKAPLCGNSVGTDRGFLAR----- 115

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D             D+  V      + P                    A  N  E   
Sbjct: 116 --DMPSLEEYLHYRIVDVSSVKELARRWYPR-------------------AYFNSPEKNG 154

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A AD+  ++A +   RE
Sbjct: 155 NHRALADIRESIAELRYYRE 174


>gi|319779642|ref|YP_004130555.1| 3'-to-5' oligoribonuclease (orn) [Taylorella equigenitalis MCE9]
 gi|317109666|gb|ADU92412.1| 3'-to-5' oligoribonuclease (orn) [Taylorella equigenitalis MCE9]
          Length = 181

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 7/123 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFITGI 63
           V  D E  G +   DR  + A +  +     +    V+     D  L   +         
Sbjct: 9   VWLDMEMTGLNPDQDRIIEVAVIITEADLSVVAEAPVYVIHQDDAILNSMDKWNTSTHTK 68

Query: 64  T--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           +    K     + EA+    + +FF          +  N++  D  +      +     +
Sbjct: 69  SGLVSKVKESKLNEAQVEEALLKFFKEHIPEGCIPLCGNSVNQDRRFMFKYMPKLEKYLH 128

Query: 119 RWS 121
             +
Sbjct: 129 YRT 131


>gi|227504725|ref|ZP_03934774.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
 gi|227198735|gb|EEI78783.1| DNA polymerase III epsilon subunit [Corynebacterium striatum ATCC
           6940]
          Length = 451

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 68/226 (30%), Gaps = 24/226 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62
           +F   D ET   +       Q   VR  R  +++ES   + C P        +  + I G
Sbjct: 100 NFTAVDVET--ANDDWGSVCQIGAVRF-RDGQEVESR-TWLCTPPPGLEEFADINISIHG 155

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I P+         A  +      F      ++  +N +FD    R+   +        + 
Sbjct: 156 IKPEDVADAQPFAAAAAEL----FEFLGEDVLVAHNAQFDSTALRSGLRKASASIPEIT- 210

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                            + +       +      + KL  +A   G E    H+A AD  
Sbjct: 211 --------------LACSLALARDASKAGVIDVANHKLPTVASFCGAEDFQHHEATADAR 256

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
           A   +V  +  +          +R +      +D   + P++    
Sbjct: 257 AAGVIVVDLARRFGHTGSIHELFRGREFTLGKLDSTAIIPVLRAHT 302


>gi|54310437|ref|YP_131457.1| oligoribonuclease [Photobacterium profundum SS9]
 gi|59798036|sp|Q6LM23|ORN_PHOPR RecName: Full=Oligoribonuclease
 gi|46914878|emb|CAG21655.1| putative oligoribonuclease [Photobacterium profundum SS9]
          Length = 181

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 11/127 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D  + +  + A +  D Q   +    V     ++  L   D      
Sbjct: 6   QNLIWVDLEMTGLDPEIHQIIEIATIVTDAQLNILAEGPVLAIHQSEAELAKMDDWCTNT 65

Query: 61  TGITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
              T     ++  +    E +  R+   F           I  N+I  D  +        
Sbjct: 66  H--TNSGLVERIRQSKFTEEDAIRQTIAFLEQWVPKGASPICGNSIGQDRRFLYKHMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EQYFHYR 130


>gi|16273602|ref|NP_439857.1| oligoribonuclease [Haemophilus influenzae Rd KW20]
 gi|260581056|ref|ZP_05848878.1| oligoribonuclease [Haemophilus influenzae RdAW]
 gi|1176352|sp|P45340|ORN_HAEIN RecName: Full=Oligoribonuclease
 gi|1574570|gb|AAC23360.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092296|gb|EEW76237.1| oligoribonuclease [Haemophilus influenzae RdAW]
          Length = 182

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 19/133 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +          ++    K  D    
Sbjct: 5   KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                         ++     + E     +   F           I  N+I  D  +   
Sbjct: 63  ----QKTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118

Query: 109 IFYRNFYDSYRWS 121
                    +   
Sbjct: 119 YMPDLADYFHYRH 131


>gi|330981566|gb|EGH79669.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 193

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 64/206 (31%), Gaps = 30/206 (14%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
           + D ET G + A D   + A V +  D +         FF  +P +    +  A+  TGI
Sbjct: 2   VVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTGI 61

Query: 64  TPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYDS 117
                   A+ +     +  R + +          ++  +N  FD  +      R     
Sbjct: 62  KLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMKR 121

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAH 175
             +      S +D   +    Y  +                 L     A GI+     AH
Sbjct: 122 NPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREAH 162

Query: 176 DAKADVYATLALVWLIREKKPKLFEY 201
            A+ D   T  L   I  +  ++  +
Sbjct: 163 SARYDTEKTAELFCGIVNRWKEMGGW 188


>gi|300173608|ref|YP_003772774.1| DNA-directed DNA polymerase III subunit epsilon [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887987|emb|CBL91955.1| DNA-directed DNA polymerase III, epsilon chain (Putative)
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 177

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 52/187 (27%), Gaps = 28/187 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +         A   V    + ++           +         + G+
Sbjct: 2   NFIAMDFET--ANHEKYSAVSIAIAIVRDN-QVVDKFYSL---IKPETYFSSRNTAVHGL 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                +       E  + I   F      ++  +N  FD+         N        + 
Sbjct: 56  RESDVIDAPK-FPEIWQIISPLFRDNK--LVVAHNAAFDN---------NILKGTLAHYG 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                + LLD +R                    + KL  +A   GI   + H+A  D  A
Sbjct: 104 IEEPHYMLLDTVRTSRKLF----------PKFENHKLNTVANNLGITLDHHHNALDDAVA 153

Query: 184 TLALVWL 190
              ++  
Sbjct: 154 AANILIY 160


>gi|260437597|ref|ZP_05791413.1| exonuclease family protein [Butyrivibrio crossotus DSM 2876]
 gi|292809950|gb|EFF69155.1| exonuclease family protein [Butyrivibrio crossotus DSM 2876]
          Length = 327

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 62/205 (30%), Gaps = 26/205 (12%)

Query: 4   HFVIYDYETF----GRDVA-LD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           +++++D E      G++    D      +   V++D Q   I++       P       P
Sbjct: 2   NYIVFDLEWNQCPDGKEKEIKDMPFEIIEIGAVKLDSQRRVIDTF-AKNIAPGVYQTLHP 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               + G T  + +  GV   +  +   +F        I       D    +        
Sbjct: 61  VMQDLIGTTMGELVEKGVPFPQAVK---EFMEWCGDDYIFCTWGCMDLTELQRNC----- 112

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
             Y     N        D+ ++      DG +  S +           A  N +++   H
Sbjct: 113 -DYYKINLNLPMPLIYYDLQKSYSICYDDGKKRSSLETVT--------ADKNIVQNEAFH 163

Query: 176 DAKADVYATLALVWLIREKKPKLFE 200
            A AD   T  +  L+   K   + 
Sbjct: 164 SAFADAEYTAKIFGLMDMDKIYEYT 188


>gi|297610461|ref|NP_001064570.2| Os10g0407500 [Oryza sativa Japonica Group]
 gi|255679392|dbj|BAF26484.2| Os10g0407500 [Oryza sativa Japonica Group]
          Length = 517

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 54/193 (27%), Gaps = 27/193 (13%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET        +     +F  + V  R+   + S      +P D  +    +V  
Sbjct: 30  IAFFDVETS-VPQRAGQGYALLEFGAILVCPRRLVVVGSYATL-VRPGDLGVVSAASVRC 87

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            GIT            + +  ++             G+N +RFD    R  F        
Sbjct: 88  NGITRDAVAAAPA-FRDVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPP 146

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                      D L ++                   A   K+  LA   G+    +H + 
Sbjct: 147 E-----PKGMIDTLPLL------------TQKFGRRAGDMKMASLANYFGLGR-QSHRSL 188

Query: 179 ADVYATLALVWLI 191
            DV   L ++   
Sbjct: 189 DDVRMNLEVLKYC 201


>gi|290968369|ref|ZP_06559909.1| exonuclease [Megasphaera genomosp. type_1 str. 28L]
 gi|290781556|gb|EFD94144.1| exonuclease [Megasphaera genomosp. type_1 str. 28L]
          Length = 221

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 50/194 (25%), Gaps = 26/194 (13%)

Query: 6   VIYDYETFGRDVAL--------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           V  D+E    D               +   V++D   ++I + + + C    +Y     A
Sbjct: 4   VFVDFEMNPIDRRHQEARRICQGEIIEIGAVKLDEDGKEIGAYKEYIC---PEYTSQMNA 60

Query: 58  V--FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +TGIT           A F      F +          N    + Y    +  N +
Sbjct: 61  TCQALTGITMDML----TPAAHFQTVFAHFLAWC--------NEDAPNAYEMYAWSENDW 108

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNA 174
                      S  +   +   +  +      + +         L       G       
Sbjct: 109 HQLTCEMRLKQSDMNDPQIRWMLDHWQNFQQIFCNLLGLDNVISLDKAVTLLGTSFVGKM 168

Query: 175 HDAKADVYATLALV 188
           HDA  D   T  L 
Sbjct: 169 HDALWDARNTSQLY 182


>gi|52842945|ref|YP_096744.1| oligoribonuclease [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54295579|ref|YP_127994.1| oligoribonuclease [Legionella pneumophila str. Lens]
 gi|54298733|ref|YP_125102.1| oligoribonuclease [Legionella pneumophila str. Paris]
 gi|148358519|ref|YP_001249726.1| oligoribonuclease [Legionella pneumophila str. Corby]
 gi|296108393|ref|YP_003620094.1| putative ACR [Legionella pneumophila 2300/99 Alcoy]
 gi|59797992|sp|Q5WT59|ORN_LEGPL RecName: Full=Oligoribonuclease
 gi|59797993|sp|Q5X1E6|ORN_LEGPA RecName: Full=Oligoribonuclease
 gi|59797999|sp|Q5ZRY0|ORN_LEGPH RecName: Full=Oligoribonuclease
 gi|166216265|sp|A5IAI0|ORN_LEGPC RecName: Full=Oligoribonuclease
 gi|52630056|gb|AAU28797.1| oligoribonuclease [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|53752518|emb|CAH13950.1| hypothetical protein lpp2797 [Legionella pneumophila str. Paris]
 gi|53755411|emb|CAH16907.1| hypothetical protein lpl2666 [Legionella pneumophila str. Lens]
 gi|148280292|gb|ABQ54380.1| oligoribonuclease [Legionella pneumophila str. Corby]
 gi|295650295|gb|ADG26142.1| putative ACR [Legionella pneumophila 2300/99 Alcoy]
 gi|307611619|emb|CBX01303.1| hypothetical protein LPW_30001 [Legionella pneumophila 130b]
          Length = 187

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 9/129 (6%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA- 57
           M N+   +  D E  G +   DR  + A +  D Q   +    V         L   +A 
Sbjct: 1   MKNNQNLIWIDLEMTGLEPEQDRIIEMATIVTDPQLNILAEGPVIAVSQPKILLDSMDAW 60

Query: 58  -VFITGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFY 111
                  +   ++ L   V E++  +   +F           +  N+I  D  +      
Sbjct: 61  NTKQHNQSGLVKRVLESNVSESQAEQLTIEFLKQYVDKGKSPMCGNSICQDRRFLYKYMP 120

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 121 ELAAYFHYR 129


>gi|325956410|ref|YP_004291822.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325332975|gb|ADZ06883.1| DNA polymerase III alpha chain [Lactobacillus acidophilus 30SC]
 gi|327183226|gb|AEA31673.1| DNA polymerase III subunit alpha [Lactobacillus amylovorus GRL
           1118]
          Length = 177

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 56/185 (30%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   +     A V V R  E ++               D   + +  I
Sbjct: 2   NFIAMDFET--ANHYPESACSLALVMV-RNTEIVDRFYTV---INPQMPFDARNIQVHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +         AE   +I          ++  +N RFD    R    R           
Sbjct: 56  TAEDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNARFDTNVMRQSLARY---------- 102

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    ++    Y            +    + KL  ++ A  +E  + H+A +D  A
Sbjct: 103 ---------NISEPHYLVIDTLATSKKFEPELPNHKLDTVSDALDVELWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CAGIL 158


>gi|213970865|ref|ZP_03398988.1| ribonuclease T [Pseudomonas syringae pv. tomato T1]
 gi|213924388|gb|EEB57960.1| ribonuclease T [Pseudomonas syringae pv. tomato T1]
          Length = 203

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +   +R +   E T  F  +P      +  A+  TG
Sbjct: 11  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 70

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 71  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 130

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GI+     A
Sbjct: 131 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 171

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 172 HSARYDTEKTAELFCGIVNRWKEMGGW 198


>gi|192362510|ref|YP_001983050.1| ribonuclease T [Cellvibrio japonicus Ueda107]
 gi|190688675|gb|ACE86353.1| ribonuclease T [Cellvibrio japonicus Ueda107]
          Length = 223

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 57/209 (27%), Gaps = 32/209 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFCKPAD--DYLPDPEAVFIT 61
           VI D ET G +   D   + A   +R+D     +   E F  +         +  A+  T
Sbjct: 24  VIVDVETGGFNAQTDALLEIAAVTIRMDEDG-FLHRHETFAFQVEPFEGANIEQAALDFT 82

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           GI P    R    E      +                ++  +N  FD  +      R   
Sbjct: 83  GIDPDSPDRIAEPELMVMTDLFSAVRRAVKESGCTRAVMVGHNAHFDLGFVNAAVERCNI 142

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                   N    + + D            +             L       GIE  N  
Sbjct: 143 K------RNPFHPFSVFDTATLAGLAFGQTV-------------LAKACKTAGIEFSNSA 183

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYL 202
           AH A  D   T  L  LI  +   L  + 
Sbjct: 184 AHCAAYDAEKTADLFCLIVNRWQTLGGWC 212


>gi|28871300|ref|NP_793919.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000]
 gi|301384500|ref|ZP_07232918.1| ribonuclease T [Pseudomonas syringae pv. tomato Max13]
 gi|302130507|ref|ZP_07256497.1| ribonuclease T [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999382|sp|Q87XM0|RNT_PSESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|28854550|gb|AAO57614.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331015669|gb|EGH95725.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 225

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 30/207 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +   +R +   E T  F  +P      +  A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
              +      S +D   +    Y  +                 L     A GI+     A
Sbjct: 153 RNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQAAGIDFDGREA 193

Query: 175 HDAKADVYATLALVWLIREKKPKLFEY 201
           H A+ D   T  L   I  +  ++  +
Sbjct: 194 HSARYDTEKTAELFCGIVNRWKEMGGW 220


>gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
 gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
          Length = 212

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 51/191 (26%), Gaps = 29/191 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D+ET   +            RV      +  T  +  +P  +    P  + I GI 
Sbjct: 7   LLAIDFET--ANEQRASACSIGLCRV-ENGRVV-RTAEYLIRP-PELRFTPFTIAIHGIR 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+  +       +    +          ++  +N  FD    R +            +  
Sbjct: 62  PEDVVDAPE-FPDIWDAMRPELE---GAVLLAHNASFDMSVLRAMLGTYGLAVPDHGYL- 116

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                  WP  +      +L  LA   GIE  + H A +D  A 
Sbjct: 117 --------------CTLVAARRAWPDLEK----HRLNHLARQFGIELEH-HRAGSDARAC 157

Query: 185 LALVWLIREKK 195
            A+        
Sbjct: 158 AAIALRAMADC 168


>gi|326576077|gb|EGE25996.1| DNA polymerase III subunit epsilon [Moraxella catarrhalis O35E]
          Length = 120

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +  V +D ET   D++  +      V++     +I ++E F      + +     V I 
Sbjct: 27  PDELVSFDCETTSLDISEAQIISIGAVKIR--GNRILTSETFEILIKPEGMIQATNVTIH 84

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY 96
           G+ P+     G V+ +F+  I QF        +  
Sbjct: 85  GLRPKGL--SGGVKVDFA--IEQFLQFVGGRPLVG 115


>gi|187779653|ref|ZP_02996126.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC
           15579]
 gi|187773278|gb|EDU37080.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC
           15579]
          Length = 195

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 12/193 (6%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    +  D ET G +       Q      D   +  E          D    +  A  I
Sbjct: 1   MKK--IFIDTETTGLEP--GEIIQLTYCVCDINSKGEERVSFSKNFFFDVDYIEESAEAI 56

Query: 61  TGITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN---FY 115
            G + +K     +G    + +  I          I   +N+ FD  +    F R     +
Sbjct: 57  HGFSVEKLKILSNGKKFKDLASEISSDLKDG---IFIAHNVNFDRKFVTAEFNRLDDINW 113

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +       +  +    R      P   +     +      ++        + V  H
Sbjct: 114 IPKEFFCTMEYFKPIVKATTRTGKLKKPRLEETVDFLNIDKKVVVKGAKKLFNCDDVGFH 173

Query: 176 DAKADVYATLALV 188
           DA+ DV A ++  
Sbjct: 174 DARYDVAALVSCY 186


>gi|90022074|ref|YP_527901.1| ribonuclease T [Saccharophagus degradans 2-40]
 gi|89951674|gb|ABD81689.1| RNAse T [Saccharophagus degradans 2-40]
          Length = 231

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 11/118 (9%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEV--FFCKPADDYLPDPEAVFIT 61
           VI D ET G +   D   + A V  R+D     +   E   F   P +    +  A+  T
Sbjct: 26  VIVDVETGGFNSHTDALLEIAAVTLRMDEDG-VLHRHETFDFHVDPFEGANIEQSALDFT 84

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRN 113
           GI      R  V E      I +           N  ++  +N  FD  +      R 
Sbjct: 85  GIDLDSDDRCAVPEDIAINEIFRSVRKAVKENGCNRAVMVAHNAHFDLGFVNAASNRC 142


>gi|195651097|gb|ACG45016.1| oligoribonuclease [Zea mays]
          Length = 249

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 15/115 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G D+  DR  + A +  D +           I  ++       +       
Sbjct: 70  LVWIDLEMTGLDITKDRILEIACIITDGKLTKQIEGPDLVISQSKDCLDNMDEWCKTHHA 129

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPN---TCIIGYNNIRFDDYYSRN 108
           A  +T    ++ L+  + E +   ++  F        T ++  N++  D  + + 
Sbjct: 130 ASGLT----ERVLQSELSEHDAEAKVLDFVRKHINSVTPLLAGNSVYVDFLFLKK 180


>gi|27383438|ref|NP_774968.1| hypothetical protein pCTX-M3_009 [Citrobacter freundii]
 gi|27261291|gb|AAN87632.1| putative protein [Citrobacter freundii]
          Length = 283

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 46/190 (24%), Gaps = 23/190 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET G         +      D     I     F  +       + +A  + GI  
Sbjct: 105 LFLDTETTGLG-NTAEALEIG--LTDAAGRVI-----FETRLKPTVAIEAQAAAVHGIDE 156

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      + + ++          I    N  FD    +     +  D         
Sbjct: 157 PALSGAP-SWPDVALQLRHAIGDRPVIIF---NAPFDTRILKQTGPPHMADP-------- 204

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D L  +    A       + + +   T       + A       AH A AD   T 
Sbjct: 205 ---ADWLGELTVYCAMELAAGYFGATNRYGTISLASAASQAALAWEGEAHSAIADARMTA 261

Query: 186 ALVWLIREKK 195
            +V  I    
Sbjct: 262 GVVNAIAAYH 271


>gi|238762297|ref|ZP_04623269.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638]
 gi|238699644|gb|EEP92389.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638]
          Length = 219

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 68/266 (25%), Gaps = 52/266 (19%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G         + A V V      I          + D     +A+ I  IT
Sbjct: 3   FRVIDTETCGF---EGGIVEIASVDV-VNGVVINPMSDL---VSPDRPISLDAMIIHHIT 55

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +            +  + ++    +   + +N              R         W  
Sbjct: 56  EEMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW-- 97

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L + R +Y         P         +       +  +++  H A  D Y T
Sbjct: 98  ----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVT 144

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
            AL+  I              R+     + +      PL+  +  FG  R  +       
Sbjct: 145 AALLQRI-------------MRDSGWNAEQMVEVTQQPLLLQTFKFGKYRGKSIEQIAR- 190

Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDS 270
             P Y   ++         +   L  
Sbjct: 191 QDPDYLRWMLTSIADLTPDMRHTLTH 216


>gi|303229628|ref|ZP_07316416.1| exonuclease [Veillonella atypica ACS-134-V-Col7a]
 gi|302515753|gb|EFL57707.1| exonuclease [Veillonella atypica ACS-134-V-Col7a]
          Length = 327

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 57/212 (26%), Gaps = 32/212 (15%)

Query: 5   FVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           ++I+D E     +                  Q   ++++   E ++S    + KP     
Sbjct: 3   YIIFDLEWNQPYSNDISFMKRARMPLTGEIIQIGAIKLNENLEIVDSF-TMYVKPKYLPH 61

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +TGIT Q     GV          Q         +  +    D    R     
Sbjct: 62  MHKHVKALTGITNQDL-NRGVPFRAAYSHFQQ---WCGKDYMLLSWGADDILILRENLLL 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
           +   S  +                A         ++ +    + +  ++DL      E +
Sbjct: 118 HKLKSIDYDS-------------WADAQMLYSYQRYGTTQQYSVAHAMEDL--HISSEEL 162

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYD 204
           +AH+A  D   T  +   +      L      
Sbjct: 163 SAHNALHDAIFTAHICQKLDLPTALLHYDSIR 194


>gi|295095557|emb|CBK84647.1| Exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 220

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 66/265 (24%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET           + A V V    + + +      +P  D     +A+ I  IT  
Sbjct: 4   VIDTETCDL---QGGIVEVASVDV-IDGKIV-NPMSHLVRP--DRPISAQAMAIHRITES 56

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                  +E E     H       +     +N  FD                   W    
Sbjct: 57  MVADKPWIE-EIIPLYH------GSQWYVAHNASFDRRV---------LPEMPGEW---- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                + + R ++          S      S KL         E ++ H A  D Y T A
Sbjct: 97  --ICTMKLARRLWPGIK-----YSNMALYKSRKLSVRTP----EGLHHHRALYDCYITAA 145

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-W 245
           L+  I        + +     +  L                  F   +     ++ VA  
Sbjct: 146 LLIDIMNTSGWTPDDMATITGRPALLT---------------TFTFGKYRGKPVSEVADK 190

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   +          +   L  
Sbjct: 191 DPGYLRWLYNNLDRMSPELRLTLKH 215


>gi|218680719|ref|ZP_03528616.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 894]
          Length = 186

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 41/161 (25%), Gaps = 25/161 (15%)

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         AE +  I  FF          +N  FD  +      R        
Sbjct: 2   HGITDEFLKDK-KPFAEVAEEILAFFGDAK---WIAHNATFDMGFINAELARIGLPPIL- 56

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAK 178
                    D L + R  +   P+               L  L    GI+  H   H A 
Sbjct: 57  ----PERVVDTLSMARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGAL 98

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
            D      +   +   +   F        +N    + +  +
Sbjct: 99  LDSELLAEVYIEMIGGRQAAFGLSTATSGQNGRGDMAEEDD 139


>gi|18311136|ref|NP_563070.1| exonuclease family protein [Clostridium perfringens str. 13]
 gi|110799345|ref|YP_696832.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|168205611|ref|ZP_02631616.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|168208856|ref|ZP_02634481.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|168212809|ref|ZP_02638434.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168215781|ref|ZP_02641406.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|169344238|ref|ZP_02865220.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|182623972|ref|ZP_02951760.1| exonuclease family protein [Clostridium perfringens D str. JGS1721]
 gi|18145819|dbj|BAB81860.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
 gi|110673992|gb|ABG82979.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|169297697|gb|EDS79797.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|170662857|gb|EDT15540.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170713011|gb|EDT25193.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170715467|gb|EDT27649.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|177910865|gb|EDT73219.1| exonuclease family protein [Clostridium perfringens D str. JGS1721]
 gi|182382180|gb|EDT79659.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 300

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 56/177 (31%), Gaps = 24/177 (13%)

Query: 19  LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78
            +   +   +++++  ++++  +  + KP+   + +P+ + ITGIT       G+   + 
Sbjct: 36  YNEIIEIGAIKLNKFMQEVDEFKT-YIKPSVFKVLNPKIIDITGITEDHLKD-GIKFEDA 93

Query: 79  SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138
              +  F    +  I+         +   N  Y ++ +           ++    +    
Sbjct: 94  MDNLKDFIGEDD--ILCSWATDDIVHIVNNAKYHSYKNISWIKKYIDIQKYCTKILAH-- 149

Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLIRE 193
                             S  L+       I+   +  HDA  D   T  +   +  
Sbjct: 150 ----------------KKSLSLKHALEELKIKMDKSKLHDALNDAVYTAEVFKRLYN 190


>gi|296219709|ref|XP_002756006.1| PREDICTED: ERI1 exoribonuclease 2 [Callithrix jacchus]
          Length = 687

 Score = 54.8 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 12/196 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +IES    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFHAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+     N       +       +   F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFAAGVSEPSTSEVNLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLI 191
               D   T  L W +
Sbjct: 214 SGLDDSRNTALLAWKM 229


>gi|255319398|ref|ZP_05360614.1| oligoribonuclease [Acinetobacter radioresistens SK82]
 gi|262380862|ref|ZP_06074013.1| oligoribonuclease [Acinetobacter radioresistens SH164]
 gi|255303534|gb|EET82735.1| oligoribonuclease [Acinetobacter radioresistens SK82]
 gi|262297497|gb|EEY85415.1| oligoribonuclease [Acinetobacter radioresistens SH164]
          Length = 187

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 20/191 (10%)

Query: 1   MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54
           M++      +  D E  G D   D+  + A +  D     +    V     +D  L   D
Sbjct: 1   MSSTPDTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNILAEGPVLAIHQSDQVLNAMD 60

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN- 108
                  G +   Q+  R  +   E  ++   F        T  +  N+I  D  +    
Sbjct: 61  EWNTRQHGQSGLIQRVRRSTLTALEAEQQTIDFLKKWVNPKTSPMCGNSICQDRRFLHRL 120

Query: 109 ----IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
                 + ++ +    S      RW        +             D   +  +L+   
Sbjct: 121 MPELEQFFHYRNLDVSSVKELAKRWRP----EIMSGLKKQASHLAMDDIRDSIRELKYYR 176

Query: 165 LANGIEHVNAH 175
               I H N H
Sbjct: 177 EYFFITHDNQH 187


>gi|253572302|ref|ZP_04849705.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838077|gb|EES66165.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 188

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 52/187 (27%), Gaps = 27/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V R  + ++       +P  +Y        + 
Sbjct: 9   MKDFAAIDFET--ANGKRTSVCSVGVVIV-RNGKIVKKIY-RLIRPCPNY-YTQWTTAVH 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T            +    I       +   +  +N  FD+        +  ++ Y  +
Sbjct: 64  GLTYADTEEA-EDFPDVWAEIKPLI---DGLPLVAHNSPFDE-----GCLKAVHELYEMT 114

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + N    +      R                    + +L  +A   G +  N H A AD 
Sbjct: 115 YPN----YKFYCTCRTSRKVF---------GKELPNHQLHTVAARCGYDLTNHHHALADA 161

Query: 182 YATLALV 188
            A   + 
Sbjct: 162 EACAQIA 168


>gi|153005992|ref|YP_001380317.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029565|gb|ABS27333.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
           Fw109-5]
          Length = 213

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 52/189 (27%), Gaps = 15/189 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +   D ET G D   D       V V     ++        +P         +V    + 
Sbjct: 29  YWAIDVETGGLDAKRDPLLAIGMVPVRAGRIRLGECYRTLVRPHAGTRITSASVTAHQLV 88

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +    + +         + +++   D  + R  F R            
Sbjct: 89  SNDFEAAP-PLGDVLPEVER---RAREGALLFHHAAIDVAFLRRDFARTGL--------- 135

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 ++D  R         ++ P+R     +  L       G+    AHDA +D  AT
Sbjct: 136 TWPSCPVVDTARL--LVRHAQLRDPTRPRDHIALNLSVARAELGLPEYQAHDALSDAIAT 193

Query: 185 LALVWLIRE 193
             L   +R 
Sbjct: 194 AELFLALRM 202


>gi|152995559|ref|YP_001340394.1| ribonuclease T [Marinomonas sp. MWYL1]
 gi|150836483|gb|ABR70459.1| ribonuclease T [Marinomonas sp. MWYL1]
          Length = 222

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 63/205 (30%), Gaps = 26/205 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +R+D   +  I  T  F  KP +    +  A+  TG
Sbjct: 16  VVIDVETAGFNQKTDALLEMAASILRMDENGDLYIHETLDFLIKPFEGANLEKAALDFTG 75

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P    R  + E E   ++                I+  +N  FD  +      R    
Sbjct: 76  IDPFAPGRQDMPETEALNQMFSKVRKELKSVGCKRAILVGHNAAFDHGFLNAAIERADIK 135

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +   +      L  ++      +                     A +    +  AH 
Sbjct: 136 RNPFHPFSSFDTASLAGLVFGQTVLAKACE-----------------AASIPFSNSEAHS 178

Query: 177 AKADVYATLALVWLIREKKPKLFEY 201
           AK D   T  L   +  +  +L  +
Sbjct: 179 AKYDTEKTAELFCEMVNRLKRLGGW 203


>gi|82701847|ref|YP_411413.1| oligoribonuclease [Nitrosospira multiformis ATCC 25196]
 gi|82409912|gb|ABB74021.1| Exonuclease [Nitrosospira multiformis ATCC 25196]
          Length = 184

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 17/128 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---------PDP 55
            +  D E  G     DR  + A V  D Q E +    V     ++  L            
Sbjct: 8   LIWIDMEMSGLSPDRDRILEIALVVTDSQLEVLAEAPVLVLSQSESVLEGMDSWNKSTHA 67

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112
           ++  +     +K    G+ EAE    +  F           +  N+I  D  +      R
Sbjct: 68  KSGLV-----EKVRASGLTEAEVEVHMIAFLQEHISAGVSPMCGNSICQDRRFLARWMPR 122

Query: 113 NFYDSYRW 120
                +  
Sbjct: 123 LEAYFHYR 130


>gi|330983214|gb|EGH81317.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 171

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 9/125 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +  D +         FF  +P +    +  A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 SYRWS 121
              + 
Sbjct: 153 RNPFH 157


>gi|330937561|gb|EGH41501.1| ribonuclease T [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 163

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 9/125 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +  D +         FF  +P +    +  A+  TG
Sbjct: 32  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 91

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 92  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 151

Query: 117 SYRWS 121
              + 
Sbjct: 152 RNPFH 156


>gi|330898573|gb|EGH29992.1| ribonuclease T [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 186

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 9/125 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +  D +         FF  +P +    +  A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 SYRWS 121
              + 
Sbjct: 153 RNPFH 157


>gi|302388533|ref|YP_003824355.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           saccharolyticum WM1]
 gi|302199161|gb|ADL06732.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           saccharolyticum WM1]
          Length = 330

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/326 (9%), Positives = 80/326 (24%), Gaps = 32/326 (9%)

Query: 2   TNHFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
              +++ D E      G+D A++       +   V+++   E++   +    +P      
Sbjct: 1   MKDYIVLDLEWNQSAGGKDEAVEHLPFEIIEIGAVKLNEAMEEVGEFK-RLIRPRIYPEL 59

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
             + + +T +  +  +++G    E  +    F +      +       D    +      
Sbjct: 60  HEKILEVTHMDEKTLIQEGRNFEEAVK---DFLTWCGEEAVFCTWGSMDLTELQRNMAYY 116

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW---PSRDDGATSFKLQDLALANGIE 170
              +             L  ++                    +     +  D A   G  
Sbjct: 117 GILNPFPKPFLYYDVQKLYSLLYGDGKDRQSLDIAVLEQQVMEDRPFHRALDDAHYTGRI 176

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNK--------------NQLRKLID 216
                  K   Y +     L   K  +++     Y                   +  LI 
Sbjct: 177 LYKMDFMKVREYWSTDYYRLPENKDEEVYLVFPGYSKYISRPFETKQDAIGDKTVTDLIC 236

Query: 217 IQNMTPLVHVSGMFGASRSNTALIAPVAWH---PRYKDSVIGCNLSGDMRVFQDLDSVQL 273
            +    L      F  ++     +     H             +    +     L   + 
Sbjct: 237 CKCNRMLRKKIRWFSVNQKFYTALGCCPEHGHVKGKIRMRRCDDGRVYVVKTMRLVGEEE 296

Query: 274 AKRLFTSHDELKGLVPVPIKEVHLNK 299
              ++   +E +       +   +NK
Sbjct: 297 IPEIYEKKEETRKKRVEKTRVRKINK 322


>gi|186475543|ref|YP_001857013.1| oligoribonuclease [Burkholderia phymatum STM815]
 gi|184192002|gb|ACC69967.1| Exonuclease RNase T and DNA polymerase III [Burkholderia phymatum
           STM815]
          Length = 207

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 13/173 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + V  D E  G D   DR  + A V  +   +K+    V     +D+ L   D       
Sbjct: 18  NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDKMVEGPVLAIHQSDETLGKMDDWNKNTH 77

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111
           G +    +     V EA+ + RI  F      P    +  N+I  D  +          +
Sbjct: 78  GRSGLIDRVRASTVTEADATERIRAFLGQHVPPGKSPMCGNSICQDRRFMARWMPELETF 137

Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
            ++ +    +      RW   +       A            D    ++   L
Sbjct: 138 FHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELRYYREHFL 190


>gi|330793394|ref|XP_003284769.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum]
 gi|325085263|gb|EGC38673.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum]
          Length = 501

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 13/134 (9%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + +D ET G   A D   +   V +     +       + KP       P A  I  +  
Sbjct: 290 ICFDLETSGFS-AEDSIIEIGAVEL-IDGCRTGVIFQSYAKPKAQ--IHPRAEEIHQLNN 345

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                   +E      +  F        +  +N+ FD         R     Y+  +DN 
Sbjct: 346 YLLQYSPPIEV----MLCSFMDWVGDSPLIAHNLSFDKRMLLQELVR-----YKIPFDND 396

Query: 126 NSRWDLLDVMRAIY 139
           +  +  +   R +Y
Sbjct: 397 HICFCTMKYFRKVY 410


>gi|322831149|ref|YP_004211176.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
 gi|321166350|gb|ADW72049.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
          Length = 184

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          + +  D E  G D   DR  + A +  D     +  
Sbjct: 7  NLIWIDLEMTGLDPERDRIIEIATLVTDAHLNILAE 42


>gi|311113524|ref|YP_003984746.1| exonuclease [Rothia dentocariosa ATCC 17931]
 gi|310945018|gb|ADP41312.1| exonuclease [Rothia dentocariosa ATCC 17931]
          Length = 409

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 53/195 (27%), Gaps = 34/195 (17%)

Query: 4   HFVIYDYET----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
            +V  D+ET     G         Q A ++V +    ++    +   PA+      E   
Sbjct: 241 TYVAVDFETANSVSGASA-----CQIALIKV-QNGLVVDRLVSYLKPPAELRRF--EFTH 292

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GI+ +          E    I  F     +  +  +N  FD    +        D Y 
Sbjct: 293 LHGISARTVRVAP-TWVEVLPAITAFI---GSFPVYAHNASFDSKVWQE------LDDYY 342

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                    +    + +       +          A  FKL              H A +
Sbjct: 343 NVHTVPTHFFCTYRMAKKALPHLENHKLPTVIKACAPKFKL------------KHHKADS 390

Query: 180 DVYATLALVWLIREK 194
           D  A   +V   +  
Sbjct: 391 DAEACAYIVLFFQTY 405


>gi|156844039|ref|XP_001645084.1| hypothetical protein Kpol_1035p39 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115740|gb|EDO17226.1| hypothetical protein Kpol_1035p39 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 263

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 27/136 (19%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST---------------EVFFCKPADD 50
           V  D E  G +   D   +   +  D     ++                 E    K  + 
Sbjct: 44  VWIDCEMTGLNHVNDHIIEICCIVTDGDMNVVKDPGTGEDNVYESVIHYDEEVMSKMNEW 103

Query: 51  YLPDPEAVFITGIT--PQKALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +         G +   +K L+     +    E  R + ++   PN  ++  N++  D  
Sbjct: 104 CIDQ------HGKSGLTEKVLKSNKSLSRVQQELIRHVKKYIPEPNKGVLAGNSVHMDRL 157

Query: 105 YSRNIFYRNFYDSYRW 120
           +  N F       +  
Sbjct: 158 FLINEFPSLIDHLFYR 173


>gi|3080450|emb|CAA18767.1| hypothetical protein [Arabidopsis thaliana]
 gi|7270965|emb|CAB80644.1| hypothetical protein [Arabidopsis thaliana]
          Length = 236

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 71/244 (29%), Gaps = 29/244 (11%)

Query: 2   TNHFVIYDYETFGRDVALD----RPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPE 56
            N  V +D ET               +F  + V  ++ E++ES      +P D  +    
Sbjct: 7   PNEIVFFDLETN--VPNKAGQHFHILEFGAIIVCPKKLEELESFTTLI-QPKDLSVVSIR 63

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           +    GIT  K         + + +IH   +       G+N  RFD      +  +  + 
Sbjct: 64  SSRSDGITRAKVTNAP-SFEDVAEKIHGLLN--GRIWAGHNIRRFD-----CVRIKEAFA 115

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +    +   D L ++   +               A + K+  LA   G+     H 
Sbjct: 116 EIGKAAPEPSGIIDSLGLLSDKF------------GKRAGNMKMASLAAYFGLGVQK-HR 162

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
           +  DV   L ++                   K      I  ++             S+ +
Sbjct: 163 SLDDVRMNLEVLKHCATVLFLESTLPNHLEGKWHTSSKIMTRSRRNYQIAQRAMPYSKGS 222

Query: 237 TALI 240
              +
Sbjct: 223 LEKV 226


>gi|319776026|ref|YP_004138514.1| oligoribonuclease [Haemophilus influenzae F3047]
 gi|317450617|emb|CBY86837.1| oligoribonuclease [Haemophilus influenzae F3047]
          Length = 182

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 19/133 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +          ++    K  D    
Sbjct: 5   KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                         ++     + E     +   F           I  N+I  D  +   
Sbjct: 63  ----QKTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118

Query: 109 IFYRNFYDSYRWS 121
                    +   
Sbjct: 119 YMPDLADYFHYRH 131


>gi|300932778|ref|ZP_07148034.1| oligoribonuclease [Corynebacterium resistens DSM 45100]
          Length = 215

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 10/128 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D       + A +  D     +           DD L   D     +
Sbjct: 17  DRIVWVDCEMTGLDPDQHVLVEIAVIVTDANLNALAEGIDLVIHATDDELSRMDDFVTKM 76

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFYRN 113
               G+T Q      +  AE  +++ ++         T  +  N+I  D  +        
Sbjct: 77  HNNSGLTNQ-IKESSLSLAEAEQQVVEYIKQFVPLGRTAPLAGNSIATDRTFIARYMPEL 135

Query: 114 FYDSYRWS 121
               +   
Sbjct: 136 NEYLHYRM 143


>gi|327307324|ref|XP_003238353.1| RNA exonuclease Rex2 [Trichophyton rubrum CBS 118892]
 gi|326458609|gb|EGD84062.1| RNA exonuclease Rex2 [Trichophyton rubrum CBS 118892]
          Length = 188

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 17/132 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE---------KIESTEVFFCKPADDYL 52
           ++  V  D E  G D A D   Q      D Q            +   +    +     +
Sbjct: 7   SDPLVWIDCEMTGLDPANDHILQICCYITDVQLNLLEPEGFEAIVHQPQDVLDRMNAWCI 66

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRN 108
                  +T       L       E +R +  +         T ++  N++  D  +   
Sbjct: 67  DTHGRSGLT----AAVLLSPTTAEEAARGLLAYIKQYVPTQRTALLAGNSVHADRAFLAK 122

Query: 109 IFYRNFYDSYRW 120
             Y    D   +
Sbjct: 123 PPYAQVLDWLHY 134


>gi|297665148|ref|XP_002810969.1| PREDICTED: LOW QUALITY PROTEIN: ERI1 exoribonuclease 3-like [Pongo
           abelii]
          Length = 261

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 15/194 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 68  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTXHMYVQPVVHPQLTPFCTELTG 127

Query: 63  ITPQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           I       DG     +   R+ ++ +                  +    +    D     
Sbjct: 128 IIQAMVEMDGQPSLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKV 176

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180
              G  ++  L V      +      +           L D+     ++H    H    D
Sbjct: 177 MLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDD 236

Query: 181 VYATLALVWLIREK 194
                 ++  +  +
Sbjct: 237 CKNIANIMKTLAYR 250


>gi|269137702|ref|YP_003294402.1| hypothetical protein ETAE_0344 [Edwardsiella tarda EIB202]
 gi|267983362|gb|ACY83191.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
 gi|304557757|gb|ADM40421.1| Oligoribonuclease [Edwardsiella tarda FL6-60]
          Length = 181

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 12/35 (34%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           +  D E  G D   DR  + A +  D     +  
Sbjct: 8  LIWIDLEMTGLDPQRDRIIEIATLVTDADLNVLAE 42


>gi|297842185|ref|XP_002888974.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297334815|gb|EFH65233.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 506

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 60/193 (31%), Gaps = 31/193 (16%)

Query: 5   FVIYDYET-----FGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAV 58
              +D ET      G+  A     +F  + V  R+  ++ S      +P D  L      
Sbjct: 13  IAFFDLETAVPTKSGQPFA---ILEFGAILVCPRKLVELYSYSTL-VQPTDLSLISTLTK 68

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
             +GIT    L      +E +  ++           G+N  RFD    R+ F        
Sbjct: 69  RRSGITRDGVLSAP-TFSEIADEVYDIL--HGRIWAGHNIKRFDCVRIRDAFAEIGLCPP 125

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                   +  D L ++   +               A   K+  LA   G+    AH + 
Sbjct: 126 E-----PKATIDSLSLLSQKF------------GKRAGDMKMASLATYFGLG-DQAHRSL 167

Query: 179 ADVYATLALVWLI 191
            DV   L +V   
Sbjct: 168 DDVRMNLEVVKYC 180


>gi|145637656|ref|ZP_01793311.1| oligoribonuclease [Haemophilus influenzae PittHH]
 gi|145269179|gb|EDK09127.1| oligoribonuclease [Haemophilus influenzae PittHH]
          Length = 182

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 19/133 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G +   +R  + A +  D+    +          ++    K  D    
Sbjct: 5   KQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                         ++     + E     +   F           I  N+I  D  +   
Sbjct: 63  ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118

Query: 109 IFYRNFYDSYRWS 121
                    +   
Sbjct: 119 YMPDLADYFHYRH 131


>gi|126666943|ref|ZP_01737919.1| oligoribonuclease [Marinobacter sp. ELB17]
 gi|126628659|gb|EAZ99280.1| oligoribonuclease [Marinobacter sp. ELB17]
          Length = 180

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N  V  D E  G D   +R  + A +  D +   I    V     +D  +   D      
Sbjct: 5   NRLVWIDLEMTGLDPEQERIIEMATLITDSELNLIAEGPVLAVHQSDTLMGAMDEWCTRT 64

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   Q+     + EAE  ++   F      P    +  N+I  D  +      +   
Sbjct: 65  HGESGLTQRVTDSRISEAEAEQQTLAFLREHLEPGDSPLCGNSIGQDRRFLVKYMPQLEE 124

Query: 116 DSYRW 120
             +  
Sbjct: 125 FFHYR 129


>gi|120405054|ref|YP_954883.1| oligoribonuclease [Mycobacterium vanbaalenii PYR-1]
 gi|119957872|gb|ABM14877.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium
           vanbaalenii PYR-1]
          Length = 214

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 55/209 (26%), Gaps = 50/209 (23%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  V  D E  G D+  DR  + A +  D +   +            D +   +   ++ 
Sbjct: 6   DELVWIDCEMTGLDLKSDRLIEIAVLVTDSELNILGDGL--------DVVIHADETAMSS 57

Query: 63  ITP---QKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
           +     Q   + G++             E      I +      T  +  N+I  D  + 
Sbjct: 58  MIDVVAQMHAKSGLIDEVRASTVDLATAEDMVMTYIREHVKQAKTAPLAGNSIATDRGFI 117

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                +   D Y        S    L        +                         
Sbjct: 118 ARDMPK--LDDYLHYRMIDVSSIKELCRRWYPRIYFG----------------------- 152

Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKK 195
              E   AH A AD++ ++  +   R+  
Sbjct: 153 -QPEKGLAHRALADIHESIRELRYYRQTA 180


>gi|325275518|ref|ZP_08141430.1| exonuclease [Pseudomonas sp. TJI-51]
 gi|324099350|gb|EGB97284.1| exonuclease [Pseudomonas sp. TJI-51]
          Length = 183

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 7/121 (5%)

Query: 6   VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D E T   G     +    +     V R+  +++  +  F +P       P    +T
Sbjct: 5   LVIDLEATTDEGGWPVTEMEVIEIGASLVTREGREVDHFQ-RFVRPRRRPQLTPFCRELT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYDSYRW 120
            I+            E       +       +  + +   +D       ++ +  DS   
Sbjct: 64  HISQADV-DAAAPFREVWASFEHWLGQHREQLQAWVSWGDYDRQQLHQEWHLHGVDSLLR 122

Query: 121 S 121
           +
Sbjct: 123 T 123


>gi|145633650|ref|ZP_01789377.1| oligoribonuclease [Haemophilus influenzae 3655]
 gi|145635428|ref|ZP_01791129.1| oligoribonuclease [Haemophilus influenzae PittAA]
 gi|229845250|ref|ZP_04465383.1| oligoribonuclease [Haemophilus influenzae 6P18H1]
 gi|144985527|gb|EDJ92343.1| oligoribonuclease [Haemophilus influenzae 3655]
 gi|145267302|gb|EDK07305.1| oligoribonuclease [Haemophilus influenzae PittAA]
 gi|229811845|gb|EEP47541.1| oligoribonuclease [Haemophilus influenzae 6P18H1]
          Length = 182

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 32/133 (24%), Gaps = 19/133 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G +   +R  + A +  D+    +          ++    K  D    
Sbjct: 5   KQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                         ++     + E     +   F        +  I  N+I  D  +   
Sbjct: 63  ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGSSPICGNSIAQDKRFLVK 118

Query: 109 IFYRNFYDSYRWS 121
                    +   
Sbjct: 119 YMPDLADYFHYRH 131


>gi|26990938|ref|NP_746363.1| exonuclease [Pseudomonas putida KT2440]
 gi|24985960|gb|AAN69827.1|AE016622_4 exonuclease [Pseudomonas putida KT2440]
          Length = 183

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 47/187 (25%), Gaps = 21/187 (11%)

Query: 6   VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D E T   G     +    +     V R+  +++  +  F KP       P    +T
Sbjct: 5   LVIDLEATTDDGGWPVTEMEVIEIGASLVTREGREVDHFQ-RFVKPRRRPQLTPFCRELT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I+            E      ++         G++  +      +       YD  +  
Sbjct: 64  HISQADVDSA-APFREVWASFERWL--------GHHRGQL-----QAWVSWGDYDRQQLH 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
            +      D L              +               LA  +       H A  D 
Sbjct: 110 QEWQQYSLDSLLRTLPHINLKQRFAKARHLQRPTGLNGALQLAGMHFC--GQQHRALEDA 167

Query: 182 YATLALV 188
             T  L+
Sbjct: 168 RNTARLL 174


>gi|260776120|ref|ZP_05885015.1| hypothetical protein VIC_001504 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607343|gb|EEX33608.1| hypothetical protein VIC_001504 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 176

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 55/200 (27%), Gaps = 39/200 (19%)

Query: 3   NHFVIYDYE----------TFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDY 51
           N  V +D E          T G         +     +D  + E ++  + ++ KP  D 
Sbjct: 4   NRIVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLVKGEIVKRAQ-YYVKPEQDE 56

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           +       +TGITP+K  + G    E  + + + F   N     +     DD        
Sbjct: 57  V-SLFCSQLTGITPRKIEKQGRPLEEVLKSMIKNFGGANKIYASW---GRDDRILAQECQ 112

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
               +     + N  + + +   ++          +                   N    
Sbjct: 113 DKGIEMPFKEFINLATLYRVQHRLKDKRIGHKAAQE-----------------AQNIEWE 155

Query: 172 VNAHDAKADVYATLALVWLI 191
              H    D Y    L   +
Sbjct: 156 GRQHSGYVDAYNLAKLALTM 175


>gi|284006621|emb|CBA71882.1| oligoribonuclease [Arsenophonus nasoniae]
          Length = 173

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   DR  + A +  D     +  
Sbjct: 19 NNLIWIDLEMTGLDPQQDRIIEIATIVTDSNLTILSE 55


>gi|282865023|ref|ZP_06274076.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
 gi|282559946|gb|EFB65495.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
          Length = 201

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 33/200 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  +A D   + A +  D +   +        +P D  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGDGVDIVIRPPDAALETMPEVVR 60

Query: 60  -IT---GITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            +    G+  + A    + +AE      + +    P    +  N +  D  +        
Sbjct: 61  QMHTASGLLDELAGGTTLADAEERVLAYVREHVKEPGKAPLCGNTVGTDRGFLAR----- 115

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D             D+  V      + P                    A  N  E   
Sbjct: 116 --DMQSLEGFLHYRIVDVSSVKELARRWYPR-------------------AYFNSPEKNG 154

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A AD+  ++  +   R+
Sbjct: 155 NHRALADIRDSITELRYYRD 174


>gi|255086407|ref|XP_002509170.1| predicted protein [Micromonas sp. RCC299]
 gi|226524448|gb|ACO70428.1| predicted protein [Micromonas sp. RCC299]
          Length = 276

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 55/214 (25%), Gaps = 30/214 (14%)

Query: 4   HFVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTE----VFFCKPADDYLPDPEA 57
            +   D E    G +      AQ A V         +  E      + KP +        
Sbjct: 25  TYFSIDVECVATGNEHNARDVAQIALV---------DQFERCLLNVYVKPPEGKKVHSYL 75

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR----- 112
             +TGIT       GV   +  + +      P   ++   NI  D  + R    +     
Sbjct: 76  TPLTGITEDVLSAHGVPLEDAMQHVRAAL--PPHAVLVGQNIAKDVEWLRLEEGKDFTSL 133

Query: 113 ------NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ-WPSRDDGATSFKLQDLAL 165
                    D+      +    +           F     + W  +    + F    L  
Sbjct: 134 VDLAGLCCVDTRTRFVRSVLDIFSFFLTGTHTCGFDSTVWRVWNPQYKSWSVFSQDHLVK 193

Query: 166 A-NGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
              G +    H+A  D   ++ L       +   
Sbjct: 194 TLLGSDVGEQHNAALDALKSIRLFNYFNYLQSGQ 227


>gi|260822769|ref|XP_002606774.1| hypothetical protein BRAFLDRAFT_59133 [Branchiostoma floridae]
 gi|229292118|gb|EEN62784.1| hypothetical protein BRAFLDRAFT_59133 [Branchiostoma floridae]
          Length = 180

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 32/163 (19%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAV- 58
           M+   V  D E  G D+      + A +  D     +          A D +   P+AV 
Sbjct: 1   MSRRMVWVDLEMTGLDLDSCHIIEMACLITDDDLNVVAE--------APDLVIHQPDAVM 52

Query: 59  --------FITGIT--PQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
                      G +   +   R  +     E E    + Q+ + P  C +  N++  D  
Sbjct: 53  DTMNDWCKEHHGKSGLTEAVRRSELSLQAAEYEMLSFVRQY-TPPGVCPLAGNSVHVDKK 111

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
           +             ++         D+  +      + P+   
Sbjct: 112 FLEK-------YMPQFMNHLHYRIIDVSTIKELCRRWYPEDYN 147


>gi|38344589|emb|CAD40497.2| OSJNBa0079M09.9 [Oryza sativa Japonica Group]
 gi|116308941|emb|CAH66068.1| OSIGBa0092O07.3 [Oryza sativa Indica Group]
 gi|116309117|emb|CAH66222.1| OSIGBa0157N01.8 [Oryza sativa Indica Group]
          Length = 249

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 7/113 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFIT 61
              V  D E  G D+  DR  + A +  D +  K         + + + + D  E   + 
Sbjct: 69  KPLVWIDLEMTGLDITKDRILEIACIITDGKLTKRIEGPDLVIRQSKECVNDMNEWCKVH 128

Query: 62  GIT---PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108
                  +K L+  + E +  +++  F        T +I  N++  D  + + 
Sbjct: 129 HSASGLKEKVLQSDISENDAEKQVLDFIRKYIGSATPLIAGNSVYMDLLFLKK 181


>gi|257886664|ref|ZP_05666317.1| exonuclease [Enterococcus faecium 1,141,733]
 gi|257822718|gb|EEV49650.1| exonuclease [Enterococcus faecium 1,141,733]
          Length = 177

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 51/191 (26%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET             A V V +  + ++           +       V I GI
Sbjct: 2   NFIAMDFETANHQPYSA--CSLALVMV-KNSQIVDEFYTL---IQPETPFFWRNVQIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E  + I  +F      ++  +N  FD                     
Sbjct: 56  HQEDVRNAPK-FPEVWQTIQPYFQKN--RLVVAHNAAFDTKVLA---------------- 96

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   + +  Y                 + +L  +     I+  + HDA  D  A
Sbjct: 97  ---GCLDYYHLEQPNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHHHDALEDSRA 153

Query: 184 TLALVWLIREK 194
              ++    +K
Sbjct: 154 CAEILLYQEKK 164


>gi|27366371|ref|NP_761899.1| ribonuclease T [Vibrio vulnificus CMCP6]
 gi|320156882|ref|YP_004189261.1| ribonuclease T [Vibrio vulnificus MO6-24/O]
 gi|29611837|sp|Q8D882|RNT_VIBVU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|27362572|gb|AAO11426.1| ribonuclease T [Vibrio vulnificus CMCP6]
 gi|319932194|gb|ADV87058.1| ribonuclease T [Vibrio vulnificus MO6-24/O]
          Length = 217

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 61/201 (30%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P D    + EA+   G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFDGANLEKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E E  + I++        +  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAYGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 181 AHSALYDTEKTAELFCGIVNK 201


>gi|255724028|ref|XP_002546943.1| oligoribonuclease, mitochondrial precursor [Candida tropicalis
           MYA-3404]
 gi|240134834|gb|EER34388.1| oligoribonuclease, mitochondrial precursor [Candida tropicalis
           MYA-3404]
          Length = 256

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 18/162 (11%)

Query: 3   NHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPEAV 58
              V  D E  G DV   D   +   +  D   E ++        +   +     +   +
Sbjct: 51  KPIVWVDCEMTGLDVFGNDNIIEICCLITDGNLEIVDEEGYESTIYYPKSRLDQMNEWCI 110

Query: 59  FITGIT--PQKALRDG-----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
              G +    K L +      +VE E    I ++       ++  N+I  D ++    F 
Sbjct: 111 ETHGKSGLTAKVLANPDRKLDIVENELLEYIKKYIPKERDALLAGNSIHMDRFFMMKEFP 170

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD 153
           +     +           D+  +M   Y  +PD ++W  +  
Sbjct: 171 KVIEHLHYR-------NIDVSTIMEIGYRHNPDLMKWQPKKK 205


>gi|110803621|ref|YP_698953.1| DNA polymerase III, epsilon subunit [Clostridium perfringens SM101]
 gi|110684122|gb|ABG87492.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens SM101]
          Length = 204

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 17/191 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFI 60
             + +D ET G         Q + + V+   +    I     F          +PEA  I
Sbjct: 2   KLLFFDTETTGVKP--GSICQLSYILVNTSTKPQKTIGKNIFFTV-----DEMEPEAERI 54

Query: 61  TGITPQKA--LRDGVVEAEF-SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            G + +K   L +G+   +  +  I+ F        I  +N++FD  + ++         
Sbjct: 55  HGFSLEKLYELSEGMYFEDLYADFINDFLE---ADFIIGHNVQFDIKFLKHELLGLGEFF 111

Query: 118 YRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +       + D+  ++R    +    ++   +    T  ++ + A        N HD
Sbjct: 112 EPNNVFCTMKYYKDICKILRPTGDYKNPKLEEVIKHLNITDSEISETANKYFQGSGNYHD 171

Query: 177 AKADVYATLAL 187
           A+ D  AT   
Sbjct: 172 ARFDTAATYLT 182


>gi|301170471|emb|CBW30078.1| oligoribonuclease [Haemophilus influenzae 10810]
          Length = 182

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 32/133 (24%), Gaps = 19/133 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G +   +R  + A +  D+    +          ++    K  D    
Sbjct: 5   KQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                         ++     + E     +   F        +  I  N+I  D  +   
Sbjct: 63  ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGSSPICGNSIAQDKRFLVK 118

Query: 109 IFYRNFYDSYRWS 121
                    +   
Sbjct: 119 YMPDLADYFHYRH 131


>gi|297283615|ref|XP_001084714.2| PREDICTED: ERI1 exoribonuclease 2-like [Macaca mulatta]
          Length = 690

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +IES    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKRHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+     N       +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|30683321|ref|NP_850090.1| exonuclease family protein [Arabidopsis thaliana]
 gi|83305201|sp|Q9ZVE0|ORN_ARATH RecName: Full=Oligoribonuclease
 gi|17381150|gb|AAL36387.1| unknown protein [Arabidopsis thaliana]
 gi|25054981|gb|AAN71962.1| unknown protein [Arabidopsis thaliana]
 gi|330252818|gb|AEC07912.1| oligoribonuclease [Arabidopsis thaliana]
          Length = 222

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLP 53
               V  D E  G +V +DR  + A +  +             +  T+    K  D    
Sbjct: 43  KQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQT 102

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
              A  +T     K L   + E E  +++ +F          ++  N++  D  + + 
Sbjct: 103 HHGASGLTK----KVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKK 156


>gi|262038648|ref|ZP_06012015.1| exonuclease RNase T and DNA polymerase III [Leptotrichia
           goodfellowii F0264]
 gi|261747318|gb|EEY34790.1| exonuclease RNase T and DNA polymerase III [Leptotrichia
           goodfellowii F0264]
          Length = 195

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 70/205 (34%), Gaps = 35/205 (17%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-----EKIESTEVFFCKPADDYLPDP 55
           M  + + +D ET G           + ++V   +     EK+   + F+ +  +    + 
Sbjct: 1   MKKNIIFFDVETNG--KMGSSVLSISAIKVSYDFEKNSWEKVSEYDRFYFR-NEGEPINF 57

Query: 56  EAVFITGITPQKALRD------GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
            A+ + G+T +                E     +      +T     +NI+FD       
Sbjct: 58  GAINVNGLTDEVIAEKRENADYPSTFKEDLDSFY--LYCQDTKHFVAHNIKFD------- 108

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
             R+F      +  +     + +D++RA         +WP   + A  + +        +
Sbjct: 109 --RSFIPFPLKNQFDTM--MENIDIVRAGINEYGS-YKWPKLMECAKFYNVP-------M 156

Query: 170 EHVNAHDAKADVYATLALVWLIREK 194
           +    H++  DV  T  + + + + 
Sbjct: 157 DEEQLHESLYDVLITFRVFYKMSKN 181


>gi|240256240|ref|NP_195691.4| exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|332661722|gb|AEE87122.1| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana]
          Length = 255

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 29/195 (14%)

Query: 2   TNHFVIYDYETFGRDVALD----RPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPE 56
            N  V +D ET               +F  + V  ++ E++ES      +P D  +    
Sbjct: 7   PNEIVFFDLETN--VPNKAGQHFHILEFGAIIVCPKKLEELESFTTLI-QPKDLSVVSIR 63

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           +    GIT  K         + + +IH   +       G+N  RFD      +  +  + 
Sbjct: 64  SSRSDGITRAKVTNAP-SFEDVAEKIHGLLN--GRIWAGHNIRRFD-----CVRIKEAFA 115

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +    +   D L ++   +               A + K+  LA   G+     H 
Sbjct: 116 EIGKAAPEPSGIIDSLGLLSDKF------------GKRAGNMKMASLAAYFGLGVQK-HR 162

Query: 177 AKADVYATLALVWLI 191
           +  DV   L ++   
Sbjct: 163 SLDDVRMNLEVLKHC 177


>gi|242780586|ref|XP_002479627.1| RNA exonuclease Rex2, putative [Talaromyces stipitatus ATCC 10500]
 gi|218719774|gb|EED19193.1| RNA exonuclease Rex2, putative [Talaromyces stipitatus ATCC 10500]
          Length = 189

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 9/125 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPAD-------DYLPDP 55
            V  D E  G D   D+  Q      D Q + IE    EV   +P           +   
Sbjct: 10  LVWVDCEMTGLDPETDQILQICCFVTDAQLQLIEPNGFEVIVHQPKSKLDAMSQWCIDTH 69

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T              ++    I ++ + P T ++  N+I  D  +     Y    
Sbjct: 70  GRSGLTQAVLASTTDAATASSQLLAYIKRYVTEPRTALLAGNSIHADRAFLAKPPYSLVL 129

Query: 116 DSYRW 120
           +   +
Sbjct: 130 EWLHY 134


>gi|88812805|ref|ZP_01128050.1| oligoribonuclease [Nitrococcus mobilis Nb-231]
 gi|88789875|gb|EAR20997.1| oligoribonuclease [Nitrococcus mobilis Nb-231]
          Length = 185

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + +  D E  G D   D   + A    D++   +          ++  L   D       
Sbjct: 7   NLIWIDLEMTGLDTDRDCIIEIATAVTDKELNILAEGPTVAIHQSETVLAAMDKWNTEQH 66

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +   ++  +  + EA+  +R  QF       N   +  N+I  D  +      +    
Sbjct: 67  GSSGLVERVRQSRIDEAQAEQRTLQFLQQWVPPNASPMCGNSICQDRRFLHRCMPKLEQY 126

Query: 117 SYRW 120
            +  
Sbjct: 127 FHYR 130


>gi|79323145|ref|NP_001031426.1| exonuclease family protein [Arabidopsis thaliana]
 gi|222423704|dbj|BAH19818.1| AT2G26970 [Arabidopsis thaliana]
 gi|330252819|gb|AEC07913.1| oligoribonuclease [Arabidopsis thaliana]
          Length = 218

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLP 53
               V  D E  G +V +DR  + A +  +             +  T+    K  D    
Sbjct: 39  KQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQT 98

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
              A  +T     K L   + E E  +++ +F          ++  N++  D  + + 
Sbjct: 99  HHGASGLTK----KVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKK 152


>gi|90413340|ref|ZP_01221333.1| oligoribonuclease [Photobacterium profundum 3TCK]
 gi|90325582|gb|EAS42051.1| oligoribonuclease [Photobacterium profundum 3TCK]
          Length = 181

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 11/127 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D  + +  + A +  D Q   +    V     ++  L   D      
Sbjct: 6   QNLIWVDLEMTGLDPEIHQIIEIATIVTDAQLNILAEGPVLAIHQSEAELAKMDDWCTNT 65

Query: 61  TGITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
              T     ++  +    E +  R+   F           I  N+I  D  +        
Sbjct: 66  H--TNSGLVERIRQSAFTEEDAIRQTIAFLEQWVPKGASPICGNSIGQDRRFLYKHMPEL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 EQYFHYR 130


>gi|326795802|ref|YP_004313622.1| oligoribonuclease [Marinomonas mediterranea MMB-1]
 gi|326546566|gb|ADZ91786.1| Oligoribonuclease [Marinomonas mediterranea MMB-1]
          Length = 182

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + V  D E  G D  ++   + A +  D+    +              +   D      
Sbjct: 6   ENLVWIDLEMTGLDPEMNTIIEIATIVTDKHLNVLAQGPNLVVHQDKGVMDAMDEWCTTH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   Q+ L   +   +  +    F           I  N++  D  +      R   
Sbjct: 66  HGQSGLTQRVLDSAITMEQAEQETIAFLEKYLPAGKSPICGNSVGQDRRFLYKYMPRLEA 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 FFHYR 130


>gi|307730586|ref|YP_003907810.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
           CCGE1003]
 gi|307585121|gb|ADN58519.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
           CCGE1003]
          Length = 203

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 13/173 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + V  D E  G +   DR  + A V  +   +++    V     +D+ L   D       
Sbjct: 19  NLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLARMDQWNQNTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111
           G +    +     V EA+ +  I  F      P    +  N+I  D  +          +
Sbjct: 79  GRSGLIDRVKASTVSEADATVLIRDFLGAYVPPGKSPMCGNSICQDRRFMARWMPELETF 138

Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
            ++ +    +      RW   +       A            D    ++   L
Sbjct: 139 FHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYREHFL 191


>gi|56478391|ref|YP_159980.1| oligoribonuclease [Aromatoleum aromaticum EbN1]
 gi|81821041|sp|Q5P0T5|ORN_AZOSE RecName: Full=Oligoribonuclease
 gi|56314434|emb|CAI09079.1| oligoribonuclease [Aromatoleum aromaticum EbN1]
          Length = 183

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            NH +  D E  G     DR  + A V  D Q   +    V      D  L   D     
Sbjct: 5   QNHLIWLDMEMTGLQPDSDRIIEIAIVITDSQLNTVAEAPVIAVHQPDSVLDAMDEWNRN 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +     + EA+   ++  F       +T  +  N+I  D  +         
Sbjct: 65  THGKSGLTDRVKASLIGEADAEAQMLAFLQQHVPAHTSPMCGNSICQDRRFMARYMPHLE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 AWFHYR 130


>gi|289672571|ref|ZP_06493461.1| oligoribonuclease [Pseudomonas syringae pv. syringae FF5]
          Length = 178

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEIATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLHRHMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|323526920|ref|YP_004229073.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
           CCGE1001]
 gi|323383922|gb|ADX56013.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
           CCGE1001]
          Length = 203

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 13/173 (7%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
           + V  D E  G D   DR  + A V  +   +++    VF    +D+ L   D       
Sbjct: 19  NLVWLDMEMTGLDPDSDRIIEIAVVVTNSTLDRMVEGPVFAIHQSDETLAKMDQWNQNTH 78

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN-----IFY 111
           G +    +     V EA+ +  I  F      P    +  N+I  D  +          +
Sbjct: 79  GRSGLIDRVKASTVSEADATVLIRDFLGAYVPPGKSPMCGNSICQDRRFMARWMPELETF 138

Query: 112 RNFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
            ++ +    +      RW   +       A            D    ++   L
Sbjct: 139 FHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESIDELKYYREHFL 191


>gi|194290059|ref|YP_002005966.1| membrane linked exonuclease [Cupriavidus taiwanensis LMG 19424]
 gi|193223894|emb|CAQ69903.1| putative membrane linked exonuclease [Cupriavidus taiwanensis LMG
           19424]
          Length = 248

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 42/184 (22%), Gaps = 32/184 (17%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVD---RQWEKIESTEVFFCKPADDYLPDPEA 57
           M     I   ET G   A D P     + V+   R    +     ++            A
Sbjct: 1   MPMRVAIVSTETTGLTPA-DEPVSIGLLLVEVSPRAGGLLREVAEYYGSQEPTVPISAAA 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
               G+T          +    R I       +  ++  +   F+               
Sbjct: 60  TDTHGLTADMLRGR-RFDLGAIRAIID-----DADVLVAHGAAFNARMLEK--------- 104

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                        +L  +R             S+   A + KL  L     I       A
Sbjct: 105 -------------VLPGIRDKRWRCSVRQVRWSQYFHAANHKLDTLCEQLHIFRPRPQVA 151

Query: 178 KADV 181
             D 
Sbjct: 152 LDDC 155


>gi|37679366|ref|NP_933975.1| ribonuclease T [Vibrio vulnificus YJ016]
 gi|54036328|sp|Q7MM91|RNT_VIBVY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|37198109|dbj|BAC93946.1| ribonuclease T [Vibrio vulnificus YJ016]
          Length = 217

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 61/201 (30%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    + EA+   G
Sbjct: 20  VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E E  + I++        +  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAYGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 181 AHSALYDTEKTAELFCGIVNK 201


>gi|325970703|ref|YP_004246894.1| exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy]
 gi|324025941|gb|ADY12700.1| Exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy]
          Length = 197

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 65/219 (29%), Gaps = 30/219 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++V  D+ET   +         A  R D +   +++           + P   A  +  +
Sbjct: 2   NYVAIDFET--ANGYPGGACSVALARFDEEGMLLDTYYSLIHPKHPYFDPSMTA--VHQL 57

Query: 64  TPQKALRDGVVEAEFS-RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
             ++ L     E +    ++  F       ++  +N  FD    +  F     ++ + ++
Sbjct: 58  KDEECLAAP--EFDVIWPQMRDFI---GKDLLVAHNAVFDMGVLKGCFEVYDLEARQMTY 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                    L + R ++                 S+KL  L    G+E+  AH A  D  
Sbjct: 113 ------LCTLTIARKVW-------------PKMLSYKLSYLVDYYGMEY-QAHYALDDAI 152

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
               ++  +          L  +     +          
Sbjct: 153 MCGKMMHKLCYGHLYEMLDLRRFLITKGIEPKFIENQRK 191


>gi|227487300|ref|ZP_03917616.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227542721|ref|ZP_03972770.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227092726|gb|EEI28038.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181487|gb|EEI62459.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 312

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 8/100 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M + F+    +T G   +  R      V  D +   +++             P P    +
Sbjct: 1   MQDPFIALTIQTTGLHPSTARIVTIDAVTFDAEGTPVDTFFT---MVNPVTDPGPR--HL 55

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100
            G+   +          F +++          +I +N  +
Sbjct: 56  HGVPRAEVEAA-RPFGHFLKKLCTLLD--GRTLITHNAPQ 92


>gi|296129190|ref|YP_003636440.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas flavigena
           DSM 20109]
 gi|296021005|gb|ADG74241.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas flavigena
           DSM 20109]
          Length = 229

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 11/117 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEAV 58
           +  V  D E  G D+  D   + A V  D +   +         P  + L        ++
Sbjct: 24  DRIVWVDCEMTGLDLVHDALVEVAAVVTDSELNVLGDGVDVVIAPPAEALAQMNDFVRSM 83

Query: 59  FIT-GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIF 110
             T G+ P+  L  GV   E   ++ ++            +  N++  D  +     
Sbjct: 84  HTTSGLLPE--LEHGVTLEEAEAQVLEYVRTWVPDVGKAPLAGNSVGTDKAFLDRHM 138


>gi|227548676|ref|ZP_03978725.1| oligoribonuclease [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079239|gb|EEI17202.1| oligoribonuclease [Corynebacterium lipophiloflavum DSM 44291]
          Length = 211

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 30/119 (25%), Gaps = 10/119 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC-------KPADDYLPDP 55
           +  V  D E  G D       + A +  D     +                  DD +   
Sbjct: 10  DRIVWIDLEMTGLDPDKHVIVEVAALVTDADLNILGDGIDIVVHATDAQLAKMDDVVVSM 69

Query: 56  EAV--FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                 +T IT          E      + +     +   +  N+I  D  + R    R
Sbjct: 70  HTDNGLLTEITASTVSLADA-EDAVLGLVTKHCDPAHPAPLAGNSIATDRSFIRAHMPR 127


>gi|33519554|ref|NP_878386.1| oligoribonuclease [Candidatus Blochmannia floridanus]
 gi|77416670|sp|Q7VQP7|ORN_BLOFL RecName: Full=Oligoribonuclease
 gi|33517217|emb|CAD83599.1| oligoribonuclease [Candidatus Blochmannia floridanus]
          Length = 180

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 18/101 (17%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
          ++ +  D E  G +   DR  + A +  D +   +    V         +  PE+  +  
Sbjct: 4  DNLIWIDLEMTGLNPERDRILEIATLITDNELSILSEGPVL-------TIYQPESQLLLM 56

Query: 61 ------TGITP---QKALRDGVVEAEFSRRIHQFFSVPNTC 92
                T  +    ++     + E + S  + +F      C
Sbjct: 57 DEWNTYTHSSNGLLKEVRSSKLNECDASILVLKFLKNWVPC 97


>gi|300949122|ref|ZP_07163165.1| exonuclease [Escherichia coli MS 116-1]
 gi|300451432|gb|EFK15052.1| exonuclease [Escherichia coli MS 116-1]
          Length = 199

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D+  DR  + A +  D     +  
Sbjct: 24 NNLIWIDLEMTGLDLERDRIIEIATLVTDANLNILAE 60


>gi|148978953|ref|ZP_01815243.1| hypothetical protein VSWAT3_05721 [Vibrionales bacterium SWAT-3]
 gi|145962042|gb|EDK27329.1| hypothetical protein VSWAT3_05721 [Vibrionales bacterium SWAT-3]
          Length = 176

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 55/202 (27%), Gaps = 38/202 (18%)

Query: 1   MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           M ++ V+ +D E          T G         +     +D     I     ++ KP  
Sbjct: 1   MNHNRVVCFDLEMCCWSENGVGTTG------EIIEVGLAEIDLASGTIVKRAQYYVKPEK 54

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           D +       +TGITP+K  + G       + + + F  PN     +     DD      
Sbjct: 55  DEV-SQFCAELTGITPRKIEKQGRPLESVIKSMIKNFGGPNKIYAAW---GRDDLILHKE 110

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
                 +     + N  + + + + ++          +                   N  
Sbjct: 111 CQEKGIEPPFSEFINIATLYRVQNRLKDKRIGHRAAQE-----------------AKNIE 153

Query: 170 EHVNAHDAKADVYATLALVWLI 191
                H    D Y    L   +
Sbjct: 154 WEGRQHSGYVDAYNLAKLALTM 175


>gi|227510619|ref|ZP_03940668.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190271|gb|EEI70338.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 177

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 28/200 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET   +         A   V         T  F+     +       + + GI
Sbjct: 2   NFAAMDFET--ANAKRASACSLALAIVRNNQV----THEFYSLINPETDFSWRNINVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             Q          E    I   F+     ++  +N  FD+   +    R           
Sbjct: 56  HKQDVANAP-TFPELWDHIAPLFTANK--LVVAHNASFDNSVLKRTLERY---------- 102

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    D++   Y                 + KL  +     IE  + H+A  D  A
Sbjct: 103 ---------DLLLPHYLTLDTLKTSKQFYPQMVNHKLNTVCDELHIELEHHHNALDDSVA 153

Query: 184 TLALVWLIREKKPKLFEYLY 203
              ++   +++        +
Sbjct: 154 CANILLTQQQQFGNSVLRNF 173


>gi|227503021|ref|ZP_03933070.1| oligoribonuclease [Corynebacterium accolens ATCC 49725]
 gi|227076082|gb|EEI14045.1| oligoribonuclease [Corynebacterium accolens ATCC 49725]
          Length = 213

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 6/116 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60
           +  V  D E  G D       + A V  D     +           ++ L   ++    +
Sbjct: 14  DRLVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGKGIDLVVHATEEELSQMDSFVTEM 73

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYR 112
              +   ++  +      E    +    +    +   +  N+I  D  + R    R
Sbjct: 74  HANSGLDKEIRQSATTIREAEDAVLALINEHCEHPAPLAGNSIATDRTFIRAYMPR 129


>gi|227832962|ref|YP_002834669.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453978|gb|ACP32731.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 205

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 50/185 (27%), Gaps = 21/185 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + +  D ET   D    +      V V      I+ +   +       +   E   +  +
Sbjct: 24  NLLAVDMETTSLDPRRGKIVSIGWVPV--NGGVIDLSGAGYTVVRGAQV--AEDAHVHLL 79

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T Q+ +  G        ++ Q         +  +    +  +                  
Sbjct: 80  T-QEVIDAGEELDSAVAQLRQALQ---GRALLAHFAALEVGFIEAAS---------REVF 126

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R  ++D              +P  +D     +L  +    G+    +H+A +D  A
Sbjct: 127 GQRPRLSVVDTFALERRHMERMGTYPRGED----LRLPRVRARYGLPRYGSHNALSDALA 182

Query: 184 TLALV 188
              L 
Sbjct: 183 CAELY 187


>gi|303326602|ref|ZP_07357044.1| exonuclease [Desulfovibrio sp. 3_1_syn3]
 gi|302862590|gb|EFL85522.1| exonuclease [Desulfovibrio sp. 3_1_syn3]
          Length = 175

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 43/187 (22%), Gaps = 31/187 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET G   A          R+       +        P+   L       I G+T 
Sbjct: 9   VAIDFETSG--YAAHSACAVGLARI-EDGRVTDCFYRLLRPPSARVLF----TEIHGLTW 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                     A+                +  +N  FD              +        
Sbjct: 62  PMLRDAP-SFAQAWPEAGAIL--CGAHFLLAHNASFDRRVLLACCRAAGLPAPEAP---- 114

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                               ++   R     S KL  +    GI     H+A +D  A  
Sbjct: 115 ----------------FLCTLKGSRRSLPLPSKKLNLVCEYFGIAL-KHHNAASDAQACA 157

Query: 186 ALVWLIR 192
            +   +R
Sbjct: 158 EVYLRLR 164


>gi|152996651|ref|YP_001341486.1| oligoribonuclease [Marinomonas sp. MWYL1]
 gi|150837575|gb|ABR71551.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp.
          MWYL1]
          Length = 185

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 13/37 (35%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           + V  D E  G D   D   + A V  D+    +  
Sbjct: 6  ENLVWIDLEMTGLDPETDTIIEIATVVTDKHLNVLAK 42


>gi|118366139|ref|XP_001016288.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89298055|gb|EAR96043.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 559

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 79/267 (29%), Gaps = 24/267 (8%)

Query: 21  RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
              +F  V +D R+ E I+    F  +P    +  P    +TGIT ++         E  
Sbjct: 80  EIIEFPIVVIDLRKKEIIDRFHSF-VRPTQYPILTPFCTKLTGITQEQVDSAP-TLPEVL 137

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           + + +F               +     + +   N  DS   ++    + +  + V     
Sbjct: 138 KEVDRFLEK------------YIKDGLQKVSVLNDCDSDIRNFLRKETTFKGIPVKPVFK 185

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
            F      +P +     +     L+          H    D      +   I ++     
Sbjct: 186 EFIDLRRIFPVKISEKPTNIDHMLSCVGLTFEGVKHCGLDDATNIARVALEIAKRDYIYT 245

Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLS 259
           E+L ++        +    N     H+  +    +    +   +  H   K   +  NL 
Sbjct: 246 EHLKEH--------MYPYDNPHYYEHLVIIATQPKMKNNVEIAMIAHDLRKGKTLWNNLG 297

Query: 260 GDMRVFQDLDSVQLAKRLFTSHDELKG 286
                 Q++   +L + L     ++  
Sbjct: 298 NKSVKKQEMK-KELFEFLDKVGIDINN 323


>gi|224372066|ref|YP_002606231.1| predicted type III DNA polymerase PolC [Desulfobacterium
           autotrophicum HRM2]
 gi|223694785|gb|ACN18067.1| predicted type III DNA polymerase PolC [Desulfobacterium
           autotrophicum HRM2]
          Length = 290

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 47/180 (26%), Gaps = 29/180 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D ET   +  +    Q      +    ++E        P D +  DP  V + GI 
Sbjct: 3   FVSIDVET--ANPDMASICQIGIACFNNG--QLEREWSSLVNPRDYF--DPINVSVHGIN 56

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E    I    S      + +    FD         ++  D     W  
Sbjct: 57  ETSVSSAP-SFEEIYHEIRSLLS--GKICVSH--THFDRISMDKAIRKHSLDPIDVVW-- 109

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  LD  R               +     + L ++    G E    HDA  D  A 
Sbjct: 110 -------LDSARIAR--------RAWEECAWKGYGLANVCKIIGFEF-KHHDALEDAKAC 153


>gi|253580938|ref|ZP_04858200.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847780|gb|EES75748.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 319

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 87/344 (25%), Gaps = 45/344 (13%)

Query: 4   HFVIYDYET----FGRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           +++++D E      G+    DR      +   V+V+ + E  +       KP        
Sbjct: 2   NYIVFDLEWNQNPSGKKTRNDRLPFEIIEIGAVKVNSKKEITDHFH-RLIKPQVYKWIHD 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +  +  +  ++ GV   +    + +F          +     D    +        
Sbjct: 61  SIHEVIHVDYKDLMK-GVPFEQA---VREFIDWCGEDWYFFTWGNQDVMELQRNMKFYGL 116

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                          L  +                      S                 H
Sbjct: 117 LDLLPGPVTYYDVQKLYSISYDDGTHRCALEHAIDELKIEKSRGF--------------H 162

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF----- 230
            A AD + T  ++  I          L  Y+N  + +  I I       +VS  F     
Sbjct: 163 RALADAWYTAKVLEKINNIIIINHPSLDVYQNPKKKKDEIHISYPDHDKYVSREFATRER 222

Query: 231 -GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289
               R  T+   PV   P  +          + +V+  + + +    +            
Sbjct: 223 IMKDREVTSTRCPVCHLPAKRK---LRWFMNNPKVYYSISNCEEHGLIRGK--------- 270

Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ 333
           + I++    K   +  + +   E  E      +       L R 
Sbjct: 271 IRIRKTEDEKYFAVKTLRFTDTEEAEELRERKEVLRLRRKLKRS 314


>gi|303232128|ref|ZP_07318831.1| exonuclease [Veillonella atypica ACS-049-V-Sch6]
 gi|302513234|gb|EFL55273.1| exonuclease [Veillonella atypica ACS-049-V-Sch6]
          Length = 327

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 57/212 (26%), Gaps = 32/212 (15%)

Query: 5   FVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           ++I+D E     +                  Q   ++++   E ++S    + KP     
Sbjct: 3   YIIFDLEWNQPYSNDISFMKRARMPLTGEIIQIGAIKLNENLEIVDSF-TMYVKPKYLPH 61

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +TGIT Q     GV          Q         +  +    D    R     
Sbjct: 62  MHKHVKALTGITNQDL-NRGVPFRVAYSHFQQ---WCGKDYMLLSWGADDILILRENLLL 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
           +   S  +                A         ++ +    + +  ++DL      E +
Sbjct: 118 HKLKSIDYDS-------------WADAQMLYSYQRYGTTQQYSVAHAMEDL--HISSEEL 162

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYD 204
           +AH+A  D   T  +   +      L      
Sbjct: 163 SAHNALHDAIFTAHICQKLDLPTALLHYDSIR 194


>gi|269123136|ref|YP_003305713.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
 gi|268314462|gb|ACZ00836.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus
           moniliformis DSM 12112]
          Length = 426

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 66/214 (30%), Gaps = 28/214 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G     D   Q + +  D     +    +      D      +A  I  I+ 
Sbjct: 43  IILDVETTGIRKN-DEILQLSII--DIMGNVVFDKYMKPKYVNDWD----DAFKIHNISH 95

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +       +     ++  +     +  IIGY       +  R                  
Sbjct: 96  EMVKNKKYISY--YKKDIEKILKKHKLIIGYEVNSDIAFLRRAGIELK------------ 141

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                  +++  I        +  +  D      L D A    ++  NAHDA +D  ATL
Sbjct: 142 ------SNIVLDIAYLFSLLFENENLIDRKIRPSLLDAAKFYNLDF-NAHDALSDCIATL 194

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
                I  +K +  E+ YD +    L +   ++ 
Sbjct: 195 HCFKSILVEKKEKLEFKYDVQVMKFLEEENKVEE 228



 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 27/203 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G     D   Q + +  D + EK+ +         +      EA  I  I  
Sbjct: 251 IILDLETTGIR-ENDEIIQLSII--DIKGEKLFNEYFKPINVTEWE----EAYKIHNIGK 303

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +      +   E+  +I       +T  +    I FD    +   +              
Sbjct: 304 EMLEDK-LTIEEYREKIQNILD--STDYMIGYGIDFDYKLLQRQGF----------NVEH 350

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
             + D+ D       +     +    D      KL + +   G +    H++  D +ATL
Sbjct: 351 IKKVDVSD-------YFKYIYRKIFNDPKLKRPKLIECSNYYGFKDRGFHNSLTDCFATL 403

Query: 186 ALVWLIREKKPKLFEYLYDYRNK 208
                I +   +      +  N 
Sbjct: 404 VSYKGIYKYMLEELSDRNECENN 426


>gi|306825308|ref|ZP_07458650.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432744|gb|EFM35718.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 197

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 32/194 (16%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +D E    +         Q + VR  +  ++I + + +    A           +TG
Sbjct: 7   YIAFDLE---FNQYEGVTHLIQVSAVRF-QNGQEIGAFDSYVHTTAP---LKSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       VE +  +    F    N  I+GYN  + D                    
Sbjct: 60  ITAETLKDAPKVE-QVLKVFQAFV--GNLPIVGYNAAKSDLPILLEHGIDY--------- 107

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                + DL D      +    GI          + KLQ +A   G  H  +H++  D  
Sbjct: 108 -RDQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVANFLGF-HGKSHNSLEDAR 156

Query: 183 ATLALVWLIREKKP 196
            T  +     E   
Sbjct: 157 MTARVYEAFLESDE 170


>gi|270160326|ref|ZP_06188980.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968]
 gi|308051563|ref|YP_003915137.1| putative exonuclease [Legionella longbeachae NSW150]
 gi|269987175|gb|EEZ93432.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968]
 gi|288859988|emb|CBJ13980.1| putative exonuclease [Legionella longbeachae NSW150]
          Length = 301

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 49/188 (26%), Gaps = 33/188 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV-----DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            I D ET G D       +   +       D   E   +               PE   I
Sbjct: 40  TIIDLETMGMDATQHEIIEIGMLSFSFSNEDGILEIKHTYNELN---DPGKPIPPEITKI 96

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  +      +      + + +      + +I  +N +FD  +               
Sbjct: 97  TGIRNEDVSGKAINWTFVFQVLKE------SHLIICHNAQFDRNFLELQTPEEIQKQVT- 149

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                               F         ++    S KL  L    G    + H A  D
Sbjct: 150 -----------------SLPFGCTIKDIDWKERDYESSKLDYLNWKLGY-FYDGHRAIND 191

Query: 181 VYATLALV 188
            +ATL L+
Sbjct: 192 CWATLNLL 199


>gi|227503970|ref|ZP_03934019.1| oligoribonuclease [Corynebacterium striatum ATCC 6940]
 gi|227199438|gb|EEI79486.1| oligoribonuclease [Corynebacterium striatum ATCC 6940]
          Length = 210

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 10/153 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D       + A +  D     I           +  L   D     +
Sbjct: 9   DRLVWIDLEMTGLDPKRHVIVEVAAIITDGNLNVIGEGIDLVVHATEAELAEMDDFVTNM 68

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNF 114
              +   ++         E    +    +      +   +  N+I  D  + R    R  
Sbjct: 69  HANSGLDKEIRESTTTLREAEDAVLALIAEHCNPEHPAPLAGNSIATDRTFIRAYMPR-- 126

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
            D          S    L       A+     +
Sbjct: 127 LDEALHYRMIDVSTIKELSRRWFPRAYYNQPDK 159


>gi|56808338|ref|ZP_00366097.1| COG1199: Rad3-related DNA helicases [Streptococcus pyogenes M49
           591]
          Length = 819

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 27/170 (15%)

Query: 35  EKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCII 94
           + I+S E            D   V +TGIT ++  +      + +  I+Q       CI 
Sbjct: 37  KIIDSYET---DVNPHESLDEHIVHLTGITDKQLAKAP-DFGQVAHHIYQLIED---CIF 89

Query: 95  GYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG 154
             +N++FD        +          ++    R D +++ +  +               
Sbjct: 90  VAHNVKFDANLLAEALFLEG-------YELTIPRVDTVELAQLFFPRFE----------- 131

Query: 155 ATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYD 204
              + L  L+    I+   AH A AD  AT  L   + +K   L     +
Sbjct: 132 --KYNLGHLSRQLNIDLAEAHTAIADARATAILFLRLLQKIESLPIECLE 179


>gi|150015899|ref|YP_001308153.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902364|gb|ABR33197.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 209

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 74/228 (32%), Gaps = 39/228 (17%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
             + +D ET           Q + + VD   +  I + + FF    +    DP A  I G
Sbjct: 2   KLLFFDTETTSIKP--GSICQLSYITVDASTKPQITTGKNFFFTVDE---MDPSAKEIHG 56

Query: 63  ITPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            + +K   L DG    +      + F   +   +  +N+ FD  + ++       D Y  
Sbjct: 57  FSLEKLYELSDGQYFEDLVPEFLEDFMTAD--FLIGHNVNFDVRFLKHELLSLGEDFYP- 113

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE---------- 170
                         +    A+  D  + P  +    + KL ++     I           
Sbjct: 114 ------------KNVFCTMAYYRDICKIPKANGEIKNPKLSEVIDWLNISSNQIVETSEK 161

Query: 171 ----HVNAHDAKADVYATLALVWL--IREKKPKLFEYLYDYRNKNQLR 212
                 N HDA+ D  AT   V     +   PK +      RN N L+
Sbjct: 162 LFEGSGNYHDARFDTAATYLTVIEGLKKGHFPKGYFSNLLARNSNGLK 209


>gi|71650409|ref|XP_813903.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878830|gb|EAN92052.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 394

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 47/196 (23%), Gaps = 21/196 (10%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
            ++ D E       D       +F GV +D +   +++   F         P        
Sbjct: 85  IIVVDVEATCESNNDNYHHEIIEFPGVLIDVRRGIVDTRRSFRSYVKPWRNPVLSEFCKK 144

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           +TGI+ +               + + F      T  IG       D       +   +  
Sbjct: 145 LTGISQEDVDNAPG-----LPEVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIYEHSI 199

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
            R         ++ LD+             +           L+ + L         H  
Sbjct: 200 LRDHVSFPGIFYEYLDIRTTFA------HHFNRGAPIKLDAMLRRMRLRF---EGRPHCG 250

Query: 178 KADVYATLALVWLIRE 193
             D      L   +  
Sbjct: 251 FDDAVNIARLAVAMMR 266


>gi|323492356|ref|ZP_08097509.1| ribonuclease T [Vibrio brasiliensis LMG 20546]
 gi|323313403|gb|EGA66514.1| ribonuclease T [Vibrio brasiliensis LMG 20546]
          Length = 219

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 65/217 (29%), Gaps = 27/217 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D   + +  ST  F  +P +    + EA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLKMDENGDLVPASTIHFHVEPFEGANLEKEALDFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIMVAHNANFDHSFVMEASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                           ++  AH
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------TAGMEFDNKEAH 182

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
            A  D   T  L   I  K   L  +     +   ++
Sbjct: 183 SALYDTQKTAELFCGIVNKWKALGGWPLIEADAESIK 219


>gi|262375958|ref|ZP_06069189.1| ribonuclease T [Acinetobacter lwoffii SH145]
 gi|262309052|gb|EEY90184.1| ribonuclease T [Acinetobacter lwoffii SH145]
          Length = 219

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 31/199 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +  + + +            P +    D  ++   G
Sbjct: 23  VVVDVETAGFNAQTDALLEIAAIPIVYNEEGQFVPGQAYHAHINPFEGANLDRRSLEFIG 82

Query: 63  ITP------QKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNF 114
           I P        A  +        + +++     N    ++  +N  FD  + +    R  
Sbjct: 83  IDPSNPMRIAMAEDEKTALKRIFKSVNEVRRQQNCTHAVLVGHNAHFDLGFLQAAIARTG 142

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172
                    N    + + D +          +             L    +  GIE    
Sbjct: 143 -----TKNQNPFHSFSVFDTVTLSAVMFGQTV-------------LAKSCIQAGIEFDGK 184

Query: 173 NAHDAKADVYATLALVWLI 191
            AH A  D   T  L   I
Sbjct: 185 EAHSALYDTQKTAELFCYI 203


>gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101]
 gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 302

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 29/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET   +   +         V       E    F  KP +     P  ++I GI 
Sbjct: 3   FVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+    +     E  + I  +    +  ++  +N  FD    R                 
Sbjct: 58  PEDVENE-RTFNEIWKEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D  D+    + ++   +   +      + KL  ++ A G E  + H    D  A 
Sbjct: 97  --KTLDFYDIPYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARAC 153

Query: 185 LALV 188
             ++
Sbjct: 154 ANIL 157


>gi|194366202|ref|YP_002028812.1| oligoribonuclease [Stenotrophomonas maltophilia R551-3]
 gi|194349006|gb|ACF52129.1| Exonuclease RNase T and DNA polymerase III [Stenotrophomonas
           maltophilia R551-3]
          Length = 190

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 13/128 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
              +  D E  G D   D   + A V  D Q   +     F        L   EA+    
Sbjct: 9   ERLIWIDLEMTGLDTDNDSIIEIATVVTDAQLNVLAEGPEFAI---HHPLETLEAMDEWN 65

Query: 59  -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112
                 +   Q+ +   V  A+   +   F +         +  N+I  D  +      R
Sbjct: 66  RNQHRRSGLWQRVVDSTVTLAQAEAQTVNFLAQWIPAGLSPMCGNSICQDRRFLHRQMPR 125

Query: 113 NFYDSYRW 120
                +  
Sbjct: 126 LEKYFHYR 133


>gi|28493373|ref|NP_787534.1| oligoribonuclease [Tropheryma whipplei str. Twist]
 gi|81839131|sp|Q83GA7|ORN_TROWT RecName: Full=Oligoribonuclease
 gi|28476414|gb|AAO44503.1| oligoribonuclease [Tropheryma whipplei str. Twist]
          Length = 184

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV--- 58
            +H V  D E  G +   D   + A V  D+    ++        P+ + L    A+   
Sbjct: 7   PSHLVWVDCEMTGLNPERDELLEVAVVVTDKDLLPLDEGVNVVVSPSSEAL---GAMDNY 63

Query: 59  -----FITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRN 108
                 ++G+  + +    V EA+    + ++ +       I+  N+I  D  +   
Sbjct: 64  VARMHRVSGLLDELSNGVPVSEAQAM--VKEYITKHVKTGGIMSGNSIATDRLFITR 118


>gi|226945053|ref|YP_002800126.1| Exonuclease [Azotobacter vinelandii DJ]
 gi|226719980|gb|ACO79151.1| Exonuclease [Azotobacter vinelandii DJ]
          Length = 185

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 36/119 (30%), Gaps = 7/119 (5%)

Query: 2   TNHFVIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            + +++ D E T   G     D    +     V+R   +++  +  F +P    L     
Sbjct: 1   MDKWLVIDLEATTDEGGWPVADMEIIEIGASLVNRNGHELDHFK-RFVRPLRRPLLTLFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFY 115
             +T I                 +   + +     + G+ +   +D       + R+  
Sbjct: 60  QELTHIAQSDIDSA-TPLPMVWEQFEHWLAPYRPRLAGWTSWGDYDRRQLEQEWRRHGL 117


>gi|323466912|gb|ADX70599.1| DNA polymerase III alpha chain [Lactobacillus helveticus H10]
          Length = 177

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   +     A V V    + ++               D   + +  I
Sbjct: 2   NFIAMDFET--ANHFPESACSLALVMVRDN-KIVDRFYTV---INPQMSFDARNIQVHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           AE   +I          ++  +N RFD    R    R   +       
Sbjct: 56  TADDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNTRFDTNVMRQSLARYNIEEP----- 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                          Y            +    + KL  ++ A  +E  + H+A +D  A
Sbjct: 108 --------------HYLVIDTLATSKLFEPELPNHKLDTVSDALDVELWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CAGIL 158


>gi|168702572|ref|ZP_02734849.1| exonuclease [Gemmata obscuriglobus UQM 2246]
          Length = 183

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 42/173 (24%), Gaps = 30/173 (17%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET   D   D        RV    + +    V    P    +       + GIT
Sbjct: 18  FVAIDFET--ADHGPDSACAIGLARV-ENNKVVRREAVLIRPPRPRVMF----TEVHGIT 70

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       +  R +           +  +N  FD             D     +  
Sbjct: 71  WPMVQNA-SPFGDVWRGLLPIIE--GAKFLAAHNASFDRRVLHACCIAAGLDVPALPF-- 125

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                  + + R  +A  P                L  +    GI  ++ H  
Sbjct: 126 ----VCTVQIARRKWALKPA--------------NLPAVCRRLGIGLIHHHAG 160


>gi|218505674|ref|NP_542394.2| ERI1 exoribonuclease 2 isoform 2 [Homo sapiens]
 gi|119587240|gb|EAW66836.1| similar to RIKEN cDNA 4933424N09 gene, isoform CRA_a [Homo sapiens]
          Length = 328

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +I+S    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+     N       +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|110803333|ref|YP_699430.1| exonuclease family protein [Clostridium perfringens SM101]
 gi|110683834|gb|ABG87204.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 300

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 56/177 (31%), Gaps = 24/177 (13%)

Query: 19  LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78
            +   +   +++++  ++++  +  + KP+   + +P+ + ITGIT       G+   + 
Sbjct: 36  YNEIIEIGAIKLNKFMQEVDEFKT-YIKPSVFKVLNPKIIDITGITEDHLKD-GIKFEDA 93

Query: 79  SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138
              +  F    +  I+         +   N  Y ++ +           ++    +    
Sbjct: 94  MDNLKDFIGEDD--ILCSWATDDIVHIVNNAKYHSYKNISWIKKYIDIQKYCTKILAH-- 149

Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLIRE 193
                             S  L+       I+   +  HDA  D   T  +   +  
Sbjct: 150 ----------------KKSLSLKHALEELKIKIDKSKLHDALNDAVYTAEVFKRLYN 190


>gi|241763728|ref|ZP_04761776.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241367033|gb|EER61418.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 195

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60
            + V  D E  G +   DR  + A V    Q E      VF    AD+ L   +A     
Sbjct: 20  QNLVWLDCEMTGLEPDTDRLLEIAVVVTGPQLEPRVEGPVFAIHQADELLDRMDAWNKGT 79

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    K     + EA+  ++I  F +      T  +  N+I  D  +      R   
Sbjct: 80  HGRSGLIDKVKASTITEAQAEQQILDFLAQYVPKGTAPMCGNSIGQDRRFLVRYMPRLER 139

Query: 116 DSYRW 120
             +  
Sbjct: 140 FFHYR 144


>gi|116670981|ref|YP_831914.1| oligoribonuclease [Arthrobacter sp. FB24]
 gi|116611090|gb|ABK03814.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
          Length = 211

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 33/123 (26%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD------------- 49
              V  D E  G D+  D   + A +  D +   +        +P D             
Sbjct: 6   ERIVWIDCEMTGLDIKNDALIEVAALVTDSELNILGDGVDVVIRPDDAALAQMNDFVRDM 65

Query: 50  -------DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
                  D LP        G T  +A      EA     I ++   P    +G N++  D
Sbjct: 66  HTRSGLLDELP-------HGKTMAEA------EAVIMEYIAKWVPDPRKAPLGGNSVGTD 112

Query: 103 DYY 105
             +
Sbjct: 113 RVF 115


>gi|213161996|ref|ZP_03347706.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 104

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + + T  F  +P       PEA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79

Query: 63  ITPQKALRDGVVEAEFSRRIHQ 84
           I P   LR  V E E    I Q
Sbjct: 80  IDPSNPLRGAVSEYEALHAILQ 101


>gi|161507225|ref|YP_001577179.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571]
 gi|160348214|gb|ABX26888.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571]
          Length = 177

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   +     A V V    + ++               D   + +  I
Sbjct: 2   NFIAMDFET--ANHFPESACSLALVMVRDN-KIVDRFYTV---INPQMSFDARNIQVHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           AE   +I          ++  +N RFD    R    R   +       
Sbjct: 56  TADDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNARFDTNVMRQSLARYNIEEP----- 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                          Y            +    + KL  ++ A  +E  + H+A +D  A
Sbjct: 108 --------------HYLVIDTLATSKLFEPELPNHKLDTVSDALDVELWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CAGIL 158


>gi|14714721|gb|AAH10503.1| Exoribonuclease 2 [Homo sapiens]
 gi|123996651|gb|ABM85927.1| exonuclease domain containing 1 [synthetic construct]
 gi|123996653|gb|ABM85928.1| exonuclease domain containing 1 [synthetic construct]
 gi|307684634|dbj|BAJ20357.1| ERI1 exoribonuclease family member 2 [synthetic construct]
          Length = 328

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +I+S    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+     N       +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|26325030|dbj|BAC26269.1| unnamed protein product [Mus musculus]
          Length = 688

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+  +     +F  V ++    +IES    + +P +  +       +
Sbjct: 37  LIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+            ++           F      
Sbjct: 97  TGIKQVQV-DEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECRRKQLLKPVFLNSWI--DLRATYRLFYKRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRN 232


>gi|255547337|ref|XP_002514726.1| exonuclease, putative [Ricinus communis]
 gi|223546330|gb|EEF47832.1| exonuclease, putative [Ricinus communis]
          Length = 448

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 54/193 (27%), Gaps = 30/193 (15%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKP--ADDYLPDPEAV 58
              +D ET              +F  + V  R   ++ +   F  +P      +     +
Sbjct: 14  IAFFDLETT--LPGECEGFAILEFGAILVCPRTLVELHTYATF-VQPAADPSLIFSSSFL 70

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
              GIT    +      ++ +  +++  +       G+N  +FD         R  +   
Sbjct: 71  RSNGITYDNIVSAP-TFSDIADTVYEILN--GRLWAGHNVQKFDSV-----KIREAFAEI 122

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                      D  +++                   A   K+  LA   G+     H + 
Sbjct: 123 GRQPPVPKGVIDTWELL------------THKFGRRAGDMKMASLATYFGLG-KQTHRSL 169

Query: 179 ADVYATLALVWLI 191
            DV   + ++   
Sbjct: 170 DDVRMNVDVLKCC 182


>gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 302

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 29/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET   +   +         V       E    F  KP +     P  ++I GI 
Sbjct: 3   FVAIDFET--ANEKRNSACSIGLTVVKNNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+    +     E    I  +    +  ++  +N  FD    R                 
Sbjct: 58  PEDVENE-RTFNEIWEEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D  D++   + ++   +   +      + KL  ++ A G E  + H    D  A 
Sbjct: 97  --KTLDFYDILYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARAC 153

Query: 185 LALV 188
             ++
Sbjct: 154 ANIL 157


>gi|71891864|ref|YP_277593.1| oligoribonuclease [Candidatus Blochmannia pennsylvanicus str.
          BPEN]
 gi|71795970|gb|AAZ40721.1| oligoribonuclease [Candidatus Blochmannia pennsylvanicus str.
          BPEN]
          Length = 187

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          ++ +  D E  G +   DR  + A +  D +   +  
Sbjct: 4  DNLIWIDLEMTGLNPEWDRILEIATLVTDSKLNILSE 40


>gi|306836747|ref|ZP_07469709.1| oligoribonuclease [Corynebacterium accolens ATCC 49726]
 gi|304567369|gb|EFM42972.1| oligoribonuclease [Corynebacterium accolens ATCC 49726]
          Length = 213

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 6/116 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60
           +  V  D E  G D       + A V  D     +           ++ L   ++    +
Sbjct: 14  DRLVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGKGIDLVVHATEEELSQMDSFVTEM 73

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYR 112
              +   ++  +      E    +    +    +   +  N+I  D  + R    R
Sbjct: 74  HANSGLDKEIRQSTTTIREAEDAVLALINEHCEHPAPLAGNSIATDRTFIRAYMPR 129


>gi|74026182|ref|XP_829657.1| exonuclease [Trypanosoma brucei TREU927]
 gi|70835043|gb|EAN80545.1| exonuclease, putative [Trypanosoma brucei]
          Length = 366

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 19/87 (21%), Gaps = 5/87 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTE--VFFCKPADDYLPDPEAVFIT 61
           V  D ET G     D     A V                  F             A  + 
Sbjct: 104 VCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWELSGRSFHRLVKPTKKVSSSAYRVH 163

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV 88
            +T +   R     A     +  F S 
Sbjct: 164 KLTSKVLERQP-PFAAILPDLAAFLSD 189


>gi|329116993|ref|ZP_08245710.1| DNA polymerase III, epsilon subunit [Streptococcus parauberis NCFD
           2020]
 gi|326907398|gb|EGE54312.1| DNA polymerase III, epsilon subunit [Streptococcus parauberis NCFD
           2020]
          Length = 198

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 30/208 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +++ +D E F          Q + ++  +  ++++S + +                +TGI
Sbjct: 6   NYIAFDLE-FNTVDDKSHLIQLSAIKC-QNHKEVDSFDTYVYTVVP---LQSFINGLTGI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           T  K            + I  F S      +IGYN+ + D          N  D      
Sbjct: 61  TADKIAGAPK----VDQVISDFTSFVGDLSLIGYNSHKSDLPILAE----NGLD------ 106

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                + DL D      +   +GI          + KL  +A   GI+    H++  D  
Sbjct: 107 LTSQYKVDLYDEAFERRSTDLNGIA---------NLKLTTVADFLGIK-GRGHNSLEDAR 156

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210
            T  +     E         +    K  
Sbjct: 157 MTARVYETFLEFDDNKTYLDHQEEEKMS 184


>gi|330804144|ref|XP_003290058.1| hypothetical protein DICPUDRAFT_80810 [Dictyostelium purpureum]
 gi|325079812|gb|EGC33394.1| hypothetical protein DICPUDRAFT_80810 [Dictyostelium purpureum]
          Length = 526

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 63/208 (30%), Gaps = 18/208 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  I D ET G   +     + +   ++         E F+ K        PE+  I  +
Sbjct: 243 NIFILDSETTGL-TSNAEIIELSCACLNG--------EAFYRKSNPTISITPESTKINNL 293

Query: 64  TPQKALRD---GVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           T            VE EF   I Q  S  +    I  +N ++D         ++   +  
Sbjct: 294 TSHDLAGHQYWEKVEEEFFNFIVQQSSDDDAPIYIIAHNEKYDRGRISFHLAKST-KALE 352

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDA 177
            S+    SR    D +    +           D    S+ L +LA    I     N H +
Sbjct: 353 SSFHKTISRIKFFDSINIFKSIKLVLP--VVSDKKKESYSLDNLATFFKINTDGINRHSS 410

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDY 205
             DV     ++     K  K       +
Sbjct: 411 SGDVLFLFEILLFFFHKNYKDPNNFLKF 438


>gi|319443116|ref|ZP_07992272.1| oligoribonuclease [Corynebacterium variabile DSM 44702]
          Length = 209

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 10/148 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
           T+  V  D E  G D +     + A V  D + + ++          +D L   D     
Sbjct: 9   TDRLVWVDCEMTGLDTSRHVLVEIAVVVTDAELKPLDEGIDIVIHATEDELAEMDDFVTN 68

Query: 60  ITGIT--PQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           + G +    +     V     E      I +F +      +  N+I  D  +     Y  
Sbjct: 69  MHGSSGLTDEIRASSVSVADAEKRVVEYIRRFVASSGVAPLCGNSIASDRKFI--AKYMP 126

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAF 141
             D++        S    L        +
Sbjct: 127 DLDNFLHYRMIDVSSIKELTRRWYPRVY 154


>gi|71417705|ref|XP_810633.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70875194|gb|EAN88782.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 394

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 47/196 (23%), Gaps = 21/196 (10%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
            ++ D E       D       +F GV +D +   +++   F         P        
Sbjct: 85  IIVVDVEATCESNNDNYHHEIIEFPGVLIDVRRGIVDTRRSFRSYVKPWRNPVLSEFCKK 144

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           +TGI+ +               + + F      T  IG       D       +   +  
Sbjct: 145 LTGISQEDVDNAPG-----LPEVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIYEHSI 199

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
            R         ++ LD+             +           L+ + L         H  
Sbjct: 200 LRDHVSFPGIFYEYLDIRTTFA------HHFNRGAPIKLDAMLRRMRLRF---EGRPHCG 250

Query: 178 KADVYATLALVWLIRE 193
             D      L   +  
Sbjct: 251 FDDAVNIARLAVAMMR 266


>gi|322492440|emb|CBZ27714.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 508

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 63/229 (27%), Gaps = 35/229 (15%)

Query: 8   YDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +D E  G      D   +   +            ++ T     +P            +T 
Sbjct: 93  FDMEFTGPPVFTADGPTEDITELGLY-----SPLLDETFSCLVQPVCGRKQAQGVEELTH 147

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDS---- 117
           IT     ++G+   E  +R  QF   P    I G         +   +   +        
Sbjct: 148 ITDMMLEKEGIPFVEAWQRFLQFVQTPQPDEIAGSEERILLLSHGGKLADVSLIKWTLEK 207

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHD 176
           +           D + V+R  +   P  I     D    S+KL DL         + AH 
Sbjct: 208 FHMELPPSFVFGDTIHVIRDAHRRRPVTI-----DKHPPSWKLVDLVQWLHITPTLPAHR 262

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
           A  D   T              ++ LY    +    ++   + + P   
Sbjct: 263 AGNDARMT--------------WDALYHTLLRYGDDEMTPREQLVPRFF 297


>gi|319948005|ref|ZP_08022182.1| oligoribonuclease [Dietzia cinnamea P4]
 gi|319438351|gb|EFV93294.1| oligoribonuclease [Dietzia cinnamea P4]
          Length = 222

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 16/151 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-------DYLPDP 55
           +  V  D E  G D   D+  + A +  D     +          +D         + D 
Sbjct: 25  DRIVWIDCEMTGLDTTNDKLVEIAALVTDSDLNVLGEGVDIVIHASDAALDAMVPVVRDM 84

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFY 111
            A    G+T ++  R  V  AE  + +  +         +  +  N+I  D  +      
Sbjct: 85  HASS--GLT-EEIRRSTVTVAEAEKAVLDYVRAWVPVAGSAPLAGNSIGTDRGFL--ARD 139

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
               +SY        S    L        + 
Sbjct: 140 MPELNSYLHYRMIDVSSIKELCRRWYPRIYF 170


>gi|254508126|ref|ZP_05120252.1| exonuclease KapD [Vibrio parahaemolyticus 16]
 gi|219548961|gb|EED25960.1| exonuclease KapD [Vibrio parahaemolyticus 16]
          Length = 164

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 12/130 (9%)

Query: 12  TFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70
           T G         +     +D  + E ++  + ++ KP  D +     V +TGITP+K  +
Sbjct: 11  TTG------EIIEVGLAEIDLVKGEIVKRAQ-YYVKPEQDEV-SLFCVELTGITPRKVEK 62

Query: 71  DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130
            G    E  + + + F   N     +     DD            +     + N  + + 
Sbjct: 63  QGRPLEEVLKSVVKNFGGSNKIFASW---GRDDVVLAKECEAKGIEMPFKEFINLATLYR 119

Query: 131 LLDVMRAIYA 140
           + + ++    
Sbjct: 120 IQNRLKDKRI 129


>gi|319745762|gb|EFV98059.1| DNA polymerase III subunit epsilon [Streptococcus agalactiae ATCC
           13813]
          Length = 195

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 32/198 (16%)

Query: 5   FVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +D E  T G         Q + V+     ++I   + +                +TG
Sbjct: 7   YIAFDLEFNTVG---EHSHIIQVSAVKY-SNHQEIALFDTY---VHTKVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  +    +E         F    +T +IGYN  + D          N  D      
Sbjct: 60  ITARDIIGAPKIET-VLTDFQSFV--GDTPLIGYNGHKSDLPLLVE----NGLDLTSQYQ 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  DL D      +   +GI          + KL  +A   GI+   AH++  D  
Sbjct: 113 ------VDLYDEAFVRRSTDLNGI---------VNLKLTTVADFLGIK-GKAHNSLEDAR 156

Query: 183 ATLALVWLIREKKPKLFE 200
            T  +     +       
Sbjct: 157 MTARVYEKFLDLDENKIY 174


>gi|255658382|ref|ZP_05403791.1| putative DNA polymerase III subunit epsilon [Mitsuokella multacida
           DSM 20544]
 gi|260849714|gb|EEX69721.1| putative DNA polymerase III subunit epsilon [Mitsuokella multacida
           DSM 20544]
          Length = 241

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 54/195 (27%), Gaps = 21/195 (10%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D E  G     D   +   +R+       +  EVF          +     +TG+T + 
Sbjct: 44  FDLEMAGAFP--DDIIEIGAIRLPLGN---DKIEVFRRLIRPRTFINRTVRDMTGLTKED 98

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
                            F   P   ++G+     D         R   +    +      
Sbjct: 99  LRDK-STLDVILPEFLDFV-DPEDLVVGHAIGDNDLLSINLALIR--MNHKNGTNIRFCP 154

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
           R+  LD +R                     + L  L  + G      H A  D  A+  L
Sbjct: 155 RY--LDTVRLAQQLL----------PKRKKYNLIALLESFGWHSKKKHRAFEDALASYVL 202

Query: 188 VWLIREKKPKLFEYL 202
           +  + E   +  ++L
Sbjct: 203 LECLLEDSAEKPDWL 217


>gi|297698262|ref|XP_002826233.1| PREDICTED: ERI1 exoribonuclease 2-like isoform 2 [Pongo abelii]
          Length = 691

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 54/199 (27%), Gaps = 10/199 (5%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +IES    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+     N       +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  L                            L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLFKTSEKSLKDDIRAKSTARLFYRRKPKGLSGALQEVGIEFSGREH 215

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 216 SGLDDSRNTSLLAWKMIRD 234


>gi|237829909|ref|XP_002364252.1| oligoribonuclease, putative [Toxoplasma gondii ME49]
 gi|211961916|gb|EEA97111.1| oligoribonuclease, putative [Toxoplasma gondii ME49]
 gi|221507120|gb|EEE32724.1| oligoribonuclease, putative [Toxoplasma gondii VEG]
          Length = 367

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 20/122 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G DV  D+  + A +  D Q +         + +++       +       
Sbjct: 192 IVWVDCEMTGLDVETDQIIEIAVIVTDGQCKKRIVGPNLIVHASDELLDGMDEWCK---- 247

Query: 57  AVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIF 110
                G +       +  +  A+   +I +F            +G N++  D  +     
Sbjct: 248 --KTHGESGLTAACRKSTLTLADAEEQILEFVQKHVATTRVAPLGGNSVHVDRQFLVKQM 305

Query: 111 YR 112
            R
Sbjct: 306 PR 307


>gi|29654538|ref|NP_820230.1| oligoribonuclease [Coxiella burnetii RSA 493]
 gi|153208846|ref|ZP_01947070.1| oligoribonuclease [Coxiella burnetii 'MSU Goat Q177']
 gi|154707040|ref|YP_001424673.1| oligoribonuclease [Coxiella burnetii Dugway 5J108-111]
 gi|161829936|ref|YP_001597086.1| oligoribonuclease [Coxiella burnetii RSA 331]
 gi|165921448|ref|ZP_02219636.1| oligoribonuclease [Coxiella burnetii RSA 334]
 gi|212212380|ref|YP_002303316.1| oligoribonuclease [Coxiella burnetii CbuG_Q212]
 gi|212218651|ref|YP_002305438.1| oligoribonuclease [Coxiella burnetii CbuK_Q154]
 gi|37999374|sp|Q83C93|ORN_COXBU RecName: Full=Oligoribonuclease
 gi|29541805|gb|AAO90744.1| oligoribonuclease [Coxiella burnetii RSA 493]
 gi|120575697|gb|EAX32321.1| oligoribonuclease [Coxiella burnetii 'MSU Goat Q177']
 gi|154356326|gb|ABS77788.1| oligoribonuclease [Coxiella burnetii Dugway 5J108-111]
 gi|161761803|gb|ABX77445.1| oligoribonuclease [Coxiella burnetii RSA 331]
 gi|165916763|gb|EDR35367.1| oligoribonuclease [Coxiella burnetii RSA 334]
 gi|212010790|gb|ACJ18171.1| oligoribonuclease [Coxiella burnetii CbuG_Q212]
 gi|212012913|gb|ACJ20293.1| oligoribonuclease [Coxiella burnetii CbuK_Q154]
          Length = 183

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 33/130 (25%), Gaps = 15/130 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
           ++ +  D E  G D   DR  + A +  +   + +           +       +     
Sbjct: 6   DNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSH 65

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFY 111
             A  +     ++     V E E       F           +  N++  D  +      
Sbjct: 66  HTASGL----LERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMP 121

Query: 112 RNFYDSYRWS 121
           R     +   
Sbjct: 122 RLNQFFHYRH 131


>gi|291390710|ref|XP_002711856.1| PREDICTED: exoribonuclease 2 [Oryctolagus cuniculus]
          Length = 689

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +IES    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKHHHNQEIIEFPAVLLNTSTGEIESEFHTYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+             +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKKIVFSTGVSEPSSSEVQPCTFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|74141341|dbj|BAE35962.1| unnamed protein product [Mus musculus]
          Length = 636

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+  +     +F  V ++    +IES    + +P +  +       +
Sbjct: 37  LIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+            ++           F      
Sbjct: 97  TGIKQVQV-DEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECRRKQLLKPVFLNSWI--DLRATYRLFYKRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|61098180|ref|NP_081974.3| ERI1 exoribonuclease 2 [Mus musculus]
 gi|81888440|sp|Q5BKS4|ERI2_MOUSE RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
           domain-containing protein 1
 gi|60688299|gb|AAH90961.1| Exonuclease domain containing 1 [Mus musculus]
 gi|74138480|dbj|BAE38055.1| unnamed protein product [Mus musculus]
 gi|74189274|dbj|BAE22676.1| unnamed protein product [Mus musculus]
          Length = 688

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+  +     +F  V ++    +IES    + +P +  +       +
Sbjct: 37  LIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+            ++           F      
Sbjct: 97  TGIKQVQV-DEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECRRKQLLKPVFLNSWI--DLRATYRLFYKRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|327332353|gb|EGE74089.1| putative DNA polymerase III epsilon subunit [Propionibacterium
           acnes HL097PA1]
          Length = 210

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 36/199 (18%)

Query: 3   NHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
             FV  D+ET     G         Q A V+V    + ++        P        E  
Sbjct: 41  PSFVAVDFETANRMGGVSA-----CQVAMVKV-LDGQIVDRLNTLIRPPKGWDFF--EFT 92

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           ++ GI+              +  +  F    +   +  +N  FD    R        D +
Sbjct: 93  YLHGISATDVAEAPG-WTNIANAVSHFV---DGATVYAHNAAFDSRVWRQ------LDEH 142

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDA 177
             +       +      +                 G  ++KL  +  A    +  N H A
Sbjct: 143 FGTTTLPAPFFCSYRTAQ-------------RLIPGLPNYKLPTVLHACAPNYQLNHHRA 189

Query: 178 KADVYATLALVWLIREKKP 196
            +D  A   +V  ++ +  
Sbjct: 190 DSDAEACALIVCELQRRAQ 208


>gi|68535589|ref|YP_250294.1| oligoribonuclease [Corynebacterium jeikeium K411]
 gi|68263188|emb|CAI36676.1| putative oligoribonuclease [Corynebacterium jeikeium K411]
          Length = 210

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 40/148 (27%), Gaps = 10/148 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60
           +  V  D E  G D       + A +  D     ++         A+  L   +A    +
Sbjct: 12  DRLVWVDCEMTGLDPDQHVLVEIAVIVTDADLTPLDEGLDLVIHAAERDLARMDAVVTKM 71

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNF 114
            G +   ++     +   E   ++  +            +  N I  D  +     Y   
Sbjct: 72  HGESGLTEQIRSSDITLEEAEEQVLDYVKKHVPTAGVAPLAGNTIGADRKFI--NRYMPH 129

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
            D Y        S    L      + ++
Sbjct: 130 LDQYLHYRMIDVSSLKELARRWYPHVYN 157


>gi|167647058|ref|YP_001684721.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
 gi|167349488|gb|ABZ72223.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 201

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 50/183 (27%), Gaps = 29/183 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET   +     P       +          E  + +P  D       + + GI P
Sbjct: 4   VAIDFET--ANEQRSSPCAIGLAWI-ENGRIT-EVEHHYIRPI-DMRFSGWNIAVHGIRP 58

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      +   R+           +  +N  FD    R                  
Sbjct: 59  ADVEDADA-FPDVLGRLQARIER---ATVIAHNAAFDISVMRRTCELYGLP--------- 105

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +D +  ++           WP    G  S KL  +    G+E    HDA  D +A  
Sbjct: 106 FPCFDYICTVQVAKNT------WP----GLPSAKLNAVCDFLGVEF-KHHDAAQDAFACG 154

Query: 186 ALV 188
           ++ 
Sbjct: 155 SVA 157


>gi|117928856|ref|YP_873407.1| oligoribonuclease [Acidothermus cellulolyticus 11B]
 gi|117649319|gb|ABK53421.1| Exonuclease, RNase T and DNA polymerase III [Acidothermus
           cellulolyticus 11B]
          Length = 269

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 47/151 (31%), Gaps = 13/151 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           MT+  V  D E  G D+  D   + A +  D +   I        KP D+ L   P+ V 
Sbjct: 1   MTDALVWIDCEMTGLDLRSDALIEVAMLITDAELNVISDGIDVVIKPPDEALASMPDVVR 60

Query: 60  -IT---GITPQKALRDGVVEAEF----SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            +    G+  +  L  GV  AE        + ++        +  N I  D  +      
Sbjct: 61  QMHTASGLLDE--LPHGVSLAEAEERLLGVLREYVPEAGKAPLCGNTIATDRAFL--ARD 116

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
               D+Y        S    L        + 
Sbjct: 117 MPAVDAYLHYRMIDVSSIKELVRRWYPRVYF 147


>gi|158253677|gb|AAI54112.1| LOC100127672 protein [Xenopus (Silurana) tropicalis]
          Length = 272

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 81  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFCTELTG 140

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I            ++   R+ ++ +                  S    +    D      
Sbjct: 141 IIQDMVDGQP-TLSQVLERVDEWMAKEG-----------LLDPSVKSIFVTCGDWDLKLM 188

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G   +  L V      +      +           L D+     ++H    H    D 
Sbjct: 189 LPGQCEYLGLQVADYFKQWINLKKAYSFAIGTWPKNGLLDMNKGMSLQHIGRPHSGIDDC 248

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 249 RNIANIMKTLAHR 261


>gi|120554172|ref|YP_958523.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
 gi|120324021|gb|ABM18336.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 279

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 52/219 (23%), Gaps = 32/219 (14%)

Query: 5   FVIYDYETF----GRDVALDR-------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
            +I D E       R    +R         +F      R  E ++S   F  +P  +   
Sbjct: 13  ILIVDLEATCWESSRLPNGERQSIGNMEIIEFGCALATRTGELLDSR-SFLVRPVRNPDL 71

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +TGI+            E  R + ++   P   +I  +   +D ++ +     +
Sbjct: 72  SAFCRSLTGISQAMVNAAP-PYPEVVRALDEWLGQPAESLIWCSWGNYDRHHIQAESEAH 130

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL-QDLALANGIEHV 172
                  S                          W           L   LA  N     
Sbjct: 131 GIAPRFLS-----------------CPHLNLKRIWRRSTGQKKKTGLASALAFHNLAFEG 173

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEY-LYDYRNKNQ 210
             H    D    + L+  +  +              K  
Sbjct: 174 RPHRGVDDARNIVRLLPFMDWELEAELLRGSLRMSEKEH 212


>gi|299771588|ref|YP_003733614.1| oligoribonuclease [Acinetobacter sp. DR1]
 gi|298701676|gb|ADI92241.1| oligoribonuclease [Acinetobacter sp. DR1]
          Length = 188

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 11/131 (8%)

Query: 1   MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54
           M++      +  D E  G D   D+  + A +  D     +    V      D  L   D
Sbjct: 1   MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAVHQPDRILNAMD 60

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
                  G +   ++  R  +   +   +  +F           +  N+I  D  +   +
Sbjct: 61  EWNTRQHGQSGLIERVRRSKLTALDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRL 120

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 121 MPELEQYFHYR 131


>gi|302521659|ref|ZP_07274001.1| oligoribonuclease [Streptomyces sp. SPB78]
 gi|318057630|ref|ZP_07976353.1| oligoribonuclease [Streptomyces sp. SA3_actG]
 gi|318077542|ref|ZP_07984874.1| oligoribonuclease [Streptomyces sp. SA3_actF]
 gi|333024701|ref|ZP_08452765.1| putative oligoribonuclease [Streptomyces sp. Tu6071]
 gi|302430554|gb|EFL02370.1| oligoribonuclease [Streptomyces sp. SPB78]
 gi|332744553|gb|EGJ74994.1| putative oligoribonuclease [Streptomyces sp. Tu6071]
          Length = 198

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 18/49 (36%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
          M +  V  D E  G  +A D   + A +  D +   +        +P +
Sbjct: 1  MNDRMVWIDCEMTGLSLANDALIEVAALVTDSELNILGDGVDIVIRPPE 49


>gi|221487325|gb|EEE25557.1| oligoribonuclease protein, putative [Toxoplasma gondii GT1]
          Length = 367

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 20/122 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G DV  D+  + A +  D Q +         + +++       +       
Sbjct: 192 IVWVDCEMTGLDVETDQIIEIAVIVTDGQCKKRIVGPNLIVHASDELLDGMDEWCK---- 247

Query: 57  AVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIF 110
                G +       +  +  A+   +I +F            +G N++  D  +     
Sbjct: 248 --KTHGESGLTAACRKSTLTLADAEEQILEFVQKHVATTRVAPLGGNSVHVDRQFLVKQM 305

Query: 111 YR 112
            R
Sbjct: 306 PR 307


>gi|15602765|ref|NP_245837.1| oligoribonuclease [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|13431730|sp|P57885|ORN_PASMU RecName: Full=Oligoribonuclease
 gi|12721214|gb|AAK02984.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 184

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 36/128 (28%), Gaps = 9/128 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   +R  + A +  D+    +    V     +D+ L   +   + 
Sbjct: 5   KQNLIWIDLEMTGLDPESERIIEIATIVTDKHLNILAEGPVLAIHQSDECLAKMNDWCMK 64

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  ++     + E     +   F           I  N++  D  +        
Sbjct: 65  THTENGL-VERVKNSRLTERAAELQTLDFLKKWVPKGVSPICGNSVSQDKRFLFKYMPEL 123

Query: 114 FYDSYRWS 121
               +   
Sbjct: 124 ADYFHYRH 131


>gi|170722729|ref|YP_001750417.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
 gi|169760732|gb|ACA74048.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
           W619]
          Length = 181

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 48/187 (25%), Gaps = 21/187 (11%)

Query: 6   VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D E T   G     +    +     V R+  +++  +  F +P       P    +T
Sbjct: 5   LVIDLEATTDDGGWPVTEMEIIEIGASLVTREGREVDHFQ-RFVRPRRRPQLTPFCRELT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            I+            E   R  ++         G++  +      +       YD  +  
Sbjct: 64  HISQANVDSA-APFPEVWARFERWL--------GHHRGQL-----QAWVSWGDYDRQQLL 109

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
            +      D L              +               LA  +       H A  D 
Sbjct: 110 QEWQQHELDSLLRNLPHINLKQRFAKARHLQRPTGLNGALQLAGMHFC--GQQHRALEDA 167

Query: 182 YATLALV 188
             T  L+
Sbjct: 168 RNTARLL 174


>gi|149198226|ref|ZP_01875273.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
 gi|149138828|gb|EDM27234.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
          Length = 182

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 16/47 (34%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
           N     D E  G D   +R  + A +  D + + I+        P 
Sbjct: 1  MNKLFWIDMEMTGLDPDENRILEIAILITDHKLDIIDRFHAVIRTPK 47


>gi|83647672|ref|YP_436107.1| ribonuclease T [Hahella chejuensis KCTC 2396]
 gi|123531538|sp|Q2SCE2|RNT_HAHCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|83635715|gb|ABC31682.1| ribonuclease T [Hahella chejuensis KCTC 2396]
          Length = 218

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 58/200 (29%), Gaps = 30/200 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + + V +   D      E    F  +P      +  A+  TG
Sbjct: 22  VVVDVETAGFNSKTDALLEVSAVIISMEDDGMLYPEPPVSFNVEPFAGANIEQAALEFTG 81

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P   LRD   EA+    + +           N  I+  +N  FD  +      R    
Sbjct: 82  IDPFNPLRDAKPEADALNELFRPIRKSVKSNGCNRAILVGHNATFDHSFLFAAAERGDVK 141

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--A 174
                  N    +   D            +             L       GI   N  A
Sbjct: 142 ------RNPFHPFSTFDTATLAALAYGHTV-------------LSRACQLAGIPFDNKEA 182

Query: 175 HDAKADVYATLALVWLIREK 194
           H A+ D   T  L   I  +
Sbjct: 183 HSAEYDAMKTAELFCSIVNR 202


>gi|297623751|ref|YP_003705185.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
 gi|297164931|gb|ADI14642.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix
           DSM 17093]
          Length = 177

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 48/186 (25%), Gaps = 28/186 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G   A     + A +      E +        +P    L +P A  +  IT 
Sbjct: 14  LILDTETTGLKSA--EVIELALLSTR--GEVL---LDTLVRPKVMRL-NPYAARVHRITL 65

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            +         E    + +        ++ +N                        W   
Sbjct: 66  AELADRP-TWPEVLPELRRLAER--ATVLAWNAPFDARMLEATSAA----------WGLP 112

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           + R      MR        G +            L +L          +H A+ DV   L
Sbjct: 113 HPRLLFACAMRLYA--RARGRRSYGLHRALADEGLSELLECY-----ASHRARGDVQFVL 165

Query: 186 ALVWLI 191
            ++   
Sbjct: 166 EVLRAA 171


>gi|319896797|ref|YP_004134991.1| oligoribonuclease [Haemophilus influenzae F3031]
 gi|317432300|emb|CBY80653.1| oligoribonuclease [Haemophilus influenzae F3031]
          Length = 182

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 19/133 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G +   +R  + A +  D+    +          ++    K  D    
Sbjct: 5   KQNLIWIDLEMTGLEPEKERIIEIATIMTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                         ++     + E     +   F           I  N+I  D  +   
Sbjct: 63  ----QKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118

Query: 109 IFYRNFYDSYRWS 121
                    +   
Sbjct: 119 YMPDLADYFHYRH 131


>gi|294634445|ref|ZP_06712981.1| oligoribonuclease [Edwardsiella tarda ATCC 23685]
 gi|291092155|gb|EFE24716.1| oligoribonuclease [Edwardsiella tarda ATCC 23685]
          Length = 181

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           +  D E  G D   DR  + A +  D +   +  
Sbjct: 8  LIWIDLEMTGLDPERDRIIEIATLVTDAELNVLAE 42


>gi|163814998|ref|ZP_02206385.1| hypothetical protein COPEUT_01151 [Coprococcus eutactus ATCC 27759]
 gi|158449681|gb|EDP26676.1| hypothetical protein COPEUT_01151 [Coprococcus eutactus ATCC 27759]
          Length = 326

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 28/224 (12%)

Query: 1   MTNHFVIYDYETF-------GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           MT ++++ D E         G    +     +   V+VD+    I+       KP     
Sbjct: 1   MTMNYIVMDLEWNQSYNGHMGEHPRMPFEIIEIGAVKVDKNLNIIDEYSSLI-KPKIYKK 59

Query: 53  PDPEA-VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
              +    +     +  L  G    E      +F        I       D    +    
Sbjct: 60  LHSKIRTILN--YDENDLNLGRGFKEVCS---EFLEWCGDNYIFCTWGPMDLTELQTNMD 114

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
             + D                  +++IYA   +    P       S   + ++  N  E+
Sbjct: 115 FYYMDKLPRPLK--------FLNLQSIYASITNQSGSPQTM----SKLEKAVSEMNIPEN 162

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYL-YDYRNKNQLRKL 214
              H A  D   T  ++  ++ K              K++  ++
Sbjct: 163 EPFHTALNDARYTALVMKEMKVKNINQLYSFDLYIAPKDKAEEI 206


>gi|8134659|sp|O54364|RNT_PASHA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|2731432|gb|AAB93471.1| RNAse T [Mannheimia haemolytica]
          Length = 216

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 57/198 (28%), Gaps = 25/198 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A +  ++D Q   + +    F   P +    +PE++   G
Sbjct: 23  VVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNG 82

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ + +        + +          +I  +N   D  +      +    
Sbjct: 83  IDIDNPLRGAVAENIAIPGMFIMVRKAMKEQGCQRGVIVAHNAASDPGFFYRAAIKR--- 139

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
               +  +    + + D            +   +       F           +   AH 
Sbjct: 140 --INAKRDPFHPFAMFDTATLAGFMYGQTVLVKACQVAKIPF-----------DGKQAHS 186

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +  +
Sbjct: 187 ALYDTERTAELFCAMVNR 204


>gi|256848055|ref|ZP_05553499.1| exonuclease RNase T and DNA polymerase III [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715115|gb|EEU30092.1| exonuclease RNase T and DNA polymerase III [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 178

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 53/185 (28%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET             +   V    + ++               +   + I GI
Sbjct: 2   NFIAMDFET--ASPKRYSACSLSLAIVRDN-QIVDEFYSL---INPQTPFNWRNIQIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +       +  E  + I  F       ++  +N  FD+             +    + 
Sbjct: 56  HERDVANAP-IFPEVWKHIAPF--YTPDKLVIAHNATFDNSV---------LKNTLEHYK 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  LD +R                    + KL  +A A  IE  + H+A  D  A
Sbjct: 104 ITPPAYQTLDTLRTSQKLL----------PRLPNHKLNTVADALKIELNHHHNALDDAQA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CADIL 158


>gi|157120016|ref|XP_001653489.1| oligoribonuclease, mitochondrial [Aedes aegypti]
 gi|108875103|gb|EAT39328.1| oligoribonuclease, mitochondrial [Aedes aegypti]
          Length = 210

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFI 60
            ++ V  D E  G +V  DR  + A V  ++  E +E   ++   +P +      E    
Sbjct: 33  QHNLVWIDLEMTGLEVEKDRILEIACVITNKNLEILERGPDIVIHEPEEVLNAMNEWCQT 92

Query: 61  TGITP---QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
                   Q      +   +  + +  F         C +  N I  D  +      +  
Sbjct: 93  NHSKTGLIQAVRESKIDLQKAEQMVLDFVKKYCPEKACPLAGNTIYMDRMFLYRYMPQLN 152

Query: 115 YDSYRW 120
              +  
Sbjct: 153 EYLHYR 158


>gi|226942895|ref|YP_002797968.1| oligoribonuclease [Azotobacter vinelandii DJ]
 gi|226717822|gb|ACO76993.1| Exonuclease [Azotobacter vinelandii DJ]
          Length = 180

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 7/127 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G +   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   PQNLIWIDLEMTGLNPERDVIIEMATIVTDSELNILAEGPVIAVHQSDEILAGMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  A    R   F           +  N+I  D  +         
Sbjct: 64  QHGRSGLTQRVRDSRIDTATAEARTLAFLEQWVPRGKSPMCGNSICQDRRFLARYMPGLE 123

Query: 115 YDSYRWS 121
              +   
Sbjct: 124 AWFHYRH 130


>gi|88855197|ref|ZP_01129862.1| oligoribonuclease [marine actinobacterium PHSC20C1]
 gi|88815725|gb|EAR25582.1| oligoribonuclease [marine actinobacterium PHSC20C1]
          Length = 206

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFIT- 61
            V  D E  G DV +D   + A V  D     ++       KP+ D L         +  
Sbjct: 8   LVWIDCEMTGLDVEIDELVEVAVVITDYDLVPVDEGMSIVIKPSADALEHMGEFVTQMHT 67

Query: 62  --GITPQKALRDGVVEAEFS--RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             G+  + A    + +AEF+    I ++   P +  +  N I  D  +      R     
Sbjct: 68  SSGLIEELANGVSLADAEFAVNEYIVKYVPNPRSAPLAGNTIGTDRTFLAKYMPRVDSHL 127

Query: 118 YRWS 121
           +  S
Sbjct: 128 HYRS 131


>gi|330961285|gb|EGH61545.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 180

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 23/192 (11%)

Query: 2   TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E      G  VA     +     V++   +++  E  F +P    L     
Sbjct: 1   MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPVRRPLLTHFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T IT                +  ++ +     ++G+ +    D       +RN    
Sbjct: 60  RELTHITQSNIDSA-APLTAVWPQFERWLAHHRARVVGWASWGDYDRQQLEEEWRNHQ-- 116

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
                         LD   +         ++           L       G++     H 
Sbjct: 117 --------------LDSALSSMPHVNLKQRFAQARHLQKPLGLNSALQLAGMQFSGQQHR 162

Query: 177 AKADVYATLALV 188
           A  D   T  L+
Sbjct: 163 ALVDARNTARLL 174


>gi|311739312|ref|ZP_07713148.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
          ATCC 33035]
 gi|311305610|gb|EFQ81677.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
          ATCC 33035]
          Length = 65

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          F + D ET G +   DR  +   VR D  +  ++S
Sbjct: 31 FAVIDTETTGFNKRYDRIIELTAVRADAYFNPVDS 65


>gi|254295263|ref|YP_003061286.1| exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
           49814]
 gi|254043794|gb|ACT60589.1| Exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC
           49814]
          Length = 192

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 51/195 (26%), Gaps = 28/195 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D ET   +       Q     V    E +    ++      D         + GI 
Sbjct: 10  FIALDVET--ANNDRASICQIGLACVGWDGEIL----IWSTYVNPDVSFSAFNTKLHGIG 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                    +  +   R+  F        +  ++ RFD+         +     R +W +
Sbjct: 64  ADTVRHA-QMFPDVWGRLQPFLKQH---AMVQHS-RFDELAINAACQMHALPLPRLAWTD 118

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                  WP +  G     L  L    G++    HDA  D  A+
Sbjct: 119 SVKVAQ---------------QAWP-QFKGNGGHGLSSLKKRLGLKF-KHHDAGEDAGAS 161

Query: 185 LALVWLIREKKPKLF 199
             ++          F
Sbjct: 162 AQIILRAESVLGHAF 176


>gi|167625547|ref|YP_001675841.1| oligoribonuclease [Shewanella halifaxensis HAW-EB4]
 gi|167355569|gb|ABZ78182.1| Exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis
           HAW-EB4]
          Length = 181

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAVFI 60
           N+ +  D E  G D A+D+  + A +  D++   I    V     +D+   L D      
Sbjct: 6   NNLIWVDLEMTGLDPAVDKIIEMATIVTDKELNIIAQGPVIAIYQSDEQLALMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       E +   +   F S         +  N+I  D  +          
Sbjct: 66  HGESGLVDRVKASTTNEEQAIEQTIAFLSQYVPAGVSPMCGNSIGQDRRFLNRYMPALED 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|238789017|ref|ZP_04632806.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641]
 gi|238722781|gb|EEQ14432.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641]
          Length = 219

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 68/267 (25%), Gaps = 54/267 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G         + A +  VD     + +        + D     +A+ I  I
Sbjct: 3   FRVIDTETCGL---EGGIVEIASIDVVDG---VLSNPMSDLV--SPDRPISIDAMVIHHI 54

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T              +  + ++    +   + +N              R         W 
Sbjct: 55  TEDMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW- 97

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L + R +Y         P         +       +  +++  H A  D Y 
Sbjct: 98  -----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYV 143

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T AL+  I   +   +               +      PL+  +  FG  R  +      
Sbjct: 144 TAALLQRI--MQDSGWN-----------ADQMAEITQQPLLLSTFKFGKYRGKSIEQIAQ 190

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDS 270
              P Y   ++         +   L  
Sbjct: 191 -QDPDYLRWMLASISDLTPDMRHTLTH 216


>gi|296283456|ref|ZP_06861454.1| exonuclease, RNase T and DNA polymerase III [Citromicrobium
           bathyomarinum JL354]
          Length = 261

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 8/116 (6%)

Query: 8   YDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            D ET   D A     + A   V +  + E       +           PE   ITG+  
Sbjct: 16  VDVETTSLDPATGEIIELAIELVWISHEGEVEAQLGPWSWLNDPGEPLTPEISTITGLHD 75

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
                  + +    R++       +   +  +N RFD  +    +       +  S
Sbjct: 76  DDLRGQAIDD----RKVRALLGRAD--WLCAHNARFDVQWIDRRYPEFADKPWACS 125


>gi|260102518|ref|ZP_05752755.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           helveticus DSM 20075]
 gi|260083660|gb|EEW67780.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           helveticus DSM 20075]
 gi|328461804|gb|EGF34034.1| DNA polymerase III alpha chain [Lactobacillus helveticus MTCC 5463]
          Length = 177

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 28/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   +     A V V    + ++               D   + +  I
Sbjct: 2   NFIAMDFET--ANHFPESACSLALVMVRDN-KIVDRFYTV---INPQMSFDARNIQVHQI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T           AE   +I          ++  +N RFD    R    R   +       
Sbjct: 56  TADDVKNAP-TMAEVWPKIKGL--YQPGMLVAAHNARFDTNVMRQSLARYNIEEP----- 107

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                          Y            +    + KL  ++ A  +E  + H+A +D  A
Sbjct: 108 --------------HYLVIDTLATSKLFEPELPNHKLDTVSDALDVELWHHHNALSDSEA 153

Query: 184 TLALV 188
              ++
Sbjct: 154 CARIL 158


>gi|307150076|ref|YP_003885460.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
 gi|306980304|gb|ADN12185.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
          Length = 199

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 16/134 (11%)

Query: 5   FVIYDYETF------------GRDVALD-RPAQFAGVRVD-RQWEKIESTEVFFCKPADD 50
           +++ D E              G     +    +   V V+ +    +   + F  KP   
Sbjct: 10  YLVLDLEATCCELLRSTEGERGTIKRHEMEIIEIGAVMVEKQDLTIVAEFQTFI-KPVRY 68

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
            +       +T IT  +  +      E +  + ++ S  +  + G         + ++  
Sbjct: 69  PILTNFCKSLTSITQTQVDQAP-SYPEAAILLKKWLSNYSNAVFGSWGDYDRHQFLQDSK 127

Query: 111 YRNFYDSYRWSWDN 124
           +        +   N
Sbjct: 128 FHQVPFPIAYPHVN 141


>gi|121607325|ref|YP_995132.1| oligoribonuclease [Verminephrobacter eiseniae EF01-2]
 gi|121551965|gb|ABM56114.1| Exonuclease, RNase T and DNA polymerase III [Verminephrobacter
           eiseniae EF01-2]
          Length = 195

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 19/131 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPD 54
            + V  D E  G     DR  + A V      E         I  ++ +  K        
Sbjct: 20  QNLVWLDCEMTGLTPDTDRLLEIAVVVTGPNLEPRIAGPVLVIHQSQEWLDKMDAWNK-- 77

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNI 109
                  G +    K    G+ EA+  ++I  F S         +  N+I  D  +    
Sbjct: 78  ----GTHGRSGLIDKVKASGITEAQAEQQIIAFLSQYVPKGQVPMCGNSIGQDRRFLARY 133

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 134 MPELERFFHYR 144


>gi|299532537|ref|ZP_07045927.1| oligoribonuclease [Comamonas testosteroni S44]
 gi|298719484|gb|EFI60451.1| oligoribonuclease [Comamonas testosteroni S44]
          Length = 202

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
           + V  D E  G +   DR  + A V      +      VF    +D+ L   +A      
Sbjct: 28  NMVWLDCEMTGLNPDRDRIIEIAVVVSSSDLQIRVEGPVFAIHQSDELLGGMDAWNKGTH 87

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +    K     + EAE    +  F           +  N+I  D  +      +    
Sbjct: 88  GKSGLIDKVKASTISEAEAEAALIAFLGKYVPKGKTPLCGNSIGQDRRFMERYMPKLNNF 147

Query: 117 SYRW 120
            +  
Sbjct: 148 FHYR 151


>gi|324515366|gb|ADY46181.1| 3'-5' exonuclease eri-1 [Ascaris suum]
          Length = 402

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 64/213 (30%), Gaps = 14/213 (6%)

Query: 5   FVIYDYETFGRDV---ALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           FV+ D+E    D          +F  V +D R    +++      +P  +         +
Sbjct: 150 FVVMDFECTCEDEVYEYEHEIIEFPAVLIDVRNRRIVDTFHS-HVRPRINPKLSEFCSRL 208

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TG+T +      +   +       +        +G+NN R+            F+     
Sbjct: 209 TGVTQEMVDNA-LPFVDVFDSFRMWMQSHR---LGHNNARYAFVTDGPWDIAKFFQMQCL 264

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
               G+   D    +    AF    ++         S  L +L +         H    D
Sbjct: 265 QSGLGSVPHDFRHYINIRKAFLNKYLKGHHAQKTNLSGMLSELGMTF---EGREHCGLDD 321

Query: 181 VYATLALVWLI--REKKPKLFEYLYDYRNKNQL 211
                 +V  +     + ++ E +    +K ++
Sbjct: 322 SKNIARIVIRMLEDRSELRINERIARGSDKRKV 354


>gi|295836748|ref|ZP_06823681.1| oligoribonuclease [Streptomyces sp. SPB74]
 gi|197697620|gb|EDY44553.1| oligoribonuclease [Streptomyces sp. SPB74]
          Length = 198

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
          M +  V  D E  G  +A D   + A +  D +   +        +P  + L
Sbjct: 1  MNDRMVWIDCEMTGLSLANDALIEVAALVTDSELNILGDGVDIVIRPPGEAL 52


>gi|154249517|ref|YP_001410342.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153453|gb|ABS60685.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 188

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 55/190 (28%), Gaps = 26/190 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +   D ET G D ++        +    + + ++   ++             A  +  I+
Sbjct: 7   YCCVDIETTGIDPSMGDRIIEIAIIPIYKGKIVKEW-IYTSLVNPKVNIQAYAQSVHKIS 65

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                       E    + ++       I+ ++N +FD  +                +  
Sbjct: 66  NSDIENAPE-LDEIISVVRKY---SKDTIMVFHNAKFDLTFLDYAAKEVGQLPLDVYY-- 119

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D LD+ +A+Y                   KL+ LA    I H   H A  D + T
Sbjct: 120 ----IDTLDISKAVYG---------------RRRKLESLAQEMKISHKVTHRAYDDAFVT 160

Query: 185 LALVWLIREK 194
             +     + 
Sbjct: 161 ANVFIRFFDM 170


>gi|325271243|ref|ZP_08137788.1| oligoribonuclease [Pseudomonas sp. TJI-51]
 gi|324103646|gb|EGC00948.1| oligoribonuclease [Pseudomonas sp. TJI-51]
          Length = 180

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +   F           I  N+I  D  +         
Sbjct: 64  THGASGLTQRVRDSKVGMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRNLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|119920012|ref|XP_001253741.1| PREDICTED: three prime histone mRNA exonuclease 1-like [Bos taurus]
 gi|297492734|ref|XP_002699843.1| PREDICTED: three prime histone mRNA exonuclease 1-like [Bos taurus]
 gi|296471031|gb|DAA13146.1| three prime histone mRNA exonuclease 1-like [Bos taurus]
          Length = 370

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F+ V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFSVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  +      +  +++  +  +         + +   +         +    R 
Sbjct: 190 TGITQDQVDKAD-TFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRL 248

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W +    + +   V R+    +    +     DG     L D
Sbjct: 249 KYPPFAKKWISIQKSYGNFYKVPRSQIKLTIMLEKLGMDYDGWPHSGLDD 298


>gi|195342143|ref|XP_002037661.1| GM18382 [Drosophila sechellia]
 gi|194132511|gb|EDW54079.1| GM18382 [Drosophila sechellia]
          Length = 353

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 22/135 (16%)

Query: 4   HFVIYDYETFGRDVALD---RPAQF------AGVRVDRQWEK-IESTEVFFCKPA----- 48
            F + D ET       +      +       A +   ++ E+  +  +     P      
Sbjct: 19  TFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLTKKKEEQNQDDQQELPAAPRVLHKL 78

Query: 49  -----DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRF 101
                   + DPEA  ITG++     R+  ++ + ++ I  F     +  C++ +N   F
Sbjct: 79  NLLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNGWGF 138

Query: 102 DDYYSRNIFYRNFYD 116
           D    R  F +   +
Sbjct: 139 DFPILRQAFEKLNIE 153


>gi|183983834|ref|YP_001852125.1| oligoribonuclease Orn [Mycobacterium marinum M]
 gi|183177160|gb|ACC42270.1| oligoribonuclease Orn [Mycobacterium marinum M]
          Length = 215

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 42/163 (25%), Gaps = 26/163 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    V  D E  G D+  D+  + A +  D     +            D +   +   +
Sbjct: 1   MREELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGV--------DVVIHADDAAL 52

Query: 61  TGITP---QKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
           + +         R G+              EA     I +    P T  +  N+I  D  
Sbjct: 53  SSMVDVVADMHSRSGLTEEVRASTVDMATAEAMVLDYIGEHVKQPKTAPLAGNSIATDRS 112

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
           +          D++        S    L        +     +
Sbjct: 113 FI--ARDMPALDAFLHYRMIDVSSIKELCRRWYPRIYFGQPPK 153


>gi|221068763|ref|ZP_03544868.1| Exonuclease RNase T and DNA polymerase III [Comamonas testosteroni
           KF-1]
 gi|220713786|gb|EED69154.1| Exonuclease RNase T and DNA polymerase III [Comamonas testosteroni
           KF-1]
          Length = 202

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
           + V  D E  G +   DR  + A V      +      VF    +D+ L   +A      
Sbjct: 28  NMVWLDCEMTGLNPDRDRIIEIAVVVSSSDLQIRVEGPVFAIHQSDELLGGMDAWNKGTH 87

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +    K     + EAE    +  F           +  N+I  D  +      +    
Sbjct: 88  GKSGLIDKVKASTISEAEAEAALIAFLGKYVPKGKTPLCGNSIGQDRRFMERYMPKLNNF 147

Query: 117 SYRW 120
            +  
Sbjct: 148 FHYR 151


>gi|115373916|ref|ZP_01461207.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|310817902|ref|YP_003950260.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|115369044|gb|EAU67988.1| oligoribonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|309390974|gb|ADO68433.1| Oligoribonuclease [Stigmatella aurantiaca DW4/3-1]
          Length = 186

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 13/45 (28%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
          FV  D E  G D       +   +        +   E    +P +
Sbjct: 8  FVWLDLEMTGLDPETCAIIEIGVIITGPDLVPLAEIERVIWQPEE 52


>gi|218184498|gb|EEC66925.1| hypothetical protein OsI_33530 [Oryza sativa Indica Group]
          Length = 422

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 57/194 (29%), Gaps = 29/194 (14%)

Query: 5   FVIYDYETF---GRDVALDR-PAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
              +D ET    G      R   +F  +    RQ  ++    +   +P+D  +   EA+ 
Sbjct: 23  IAFFDVETSMPWG--PRERRTLLEFGSIFLCPRQLVEVAEPFITLVRPSDLGVVT-EALE 79

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
             GIT            + +  IH           G+N I FD    R  F         
Sbjct: 80  RKGITRGALEDAP-PFCDVADNIHNVL--HGRIWAGHNIISFDSEIIREAFAEIGRSPPE 136

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D L ++              +    A + K+ +LA    +     H +  
Sbjct: 137 -----PKGMIDTLPLL------------TQTFGRRAGNMKMANLADYFNLGP-QIHRSLY 178

Query: 180 DVYATLALVWLIRE 193
           DV   L ++     
Sbjct: 179 DVRMNLDVLKCCST 192


>gi|291547443|emb|CBL20551.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Ruminococcus sp. SR1/5]
          Length = 318

 Score = 53.3 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 87/315 (27%), Gaps = 39/315 (12%)

Query: 4   HFVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           +++++D E + ++    R           +   V+++ + E +++ +    KP   +   
Sbjct: 2   NYIVFDLE-WNQNPDGRRHPDSRLPFEIIEIGAVKLNEKREIVDTFQCLI-KPKVYHWIH 59

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
                +  +   +    G+      RR  ++                         +  +
Sbjct: 60  DSIHEVIHVDYHEL-EKGIPFPRAIRRFLEW-------------------CGEEYRFFTW 99

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHV 172
            D            ++LL +M     +      +  + +   S +  + A       ++ 
Sbjct: 100 GDQDVMELQRNMKYYNLLKLMPGPVHYYDVQKLFSIKFEDGISRRSLEYATDYLQLPKNR 159

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF-- 230
           + H A AD   T  ++  I E        L  Y+N       I I        VS  F  
Sbjct: 160 DFHRALADASYTARILLEIDEACMIRHPSLDVYQNPKSRDSEIYISYTDHDKFVSREFVS 219

Query: 231 ----GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG 286
                  R+  + + P+   P  +        +  +     L              +   
Sbjct: 220 KERLMKDRTMVSTMCPICRCPAKRKIRWFSTNNSKVYYSLALCHEHGPVAGKIRIRKTDE 279

Query: 287 LVPVPIKEVHLNKCP 301
                +K +      
Sbjct: 280 GKYFGVKTLRAEDTE 294


>gi|289620483|emb|CBI52844.1| unnamed protein product [Sordaria macrospora]
          Length = 180

 Score = 53.3 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 21/131 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61
            V  D E  G +   D   +   +  D Q   ++ T    V     A     D     + 
Sbjct: 20  LVWIDCEMTGLNPDQDAIIEIYCLITDEQLNLLDPTGWGAVIHQTKARMDAMDEWCTRVH 79

Query: 62  G------------ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           G            +TP++A        E    I ++       ++  N++  D  + R  
Sbjct: 80  GDSGLTAAVLASTVTPEQAAD------ELLAYIQKYVPNKRIALLAGNSVHADRAFLRKE 133

Query: 110 FYRNFYDSYRW 120
            Y    D   +
Sbjct: 134 PYNRVVDHLHY 144


>gi|34534279|dbj|BAC86956.1| unnamed protein product [Homo sapiens]
          Length = 279

 Score = 53.3 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +I+S    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+     N       +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|22537889|ref|NP_688740.1| DNA polymerase III subunit epsilon [Streptococcus agalactiae
           2603V/R]
 gi|76799620|ref|ZP_00781737.1| exonuclease [Streptococcus agalactiae 18RS21]
 gi|77408819|ref|ZP_00785548.1| exonuclease [Streptococcus agalactiae COH1]
 gi|22534786|gb|AAN00613.1|AE014271_8 exonuclease [Streptococcus agalactiae 2603V/R]
 gi|76585026|gb|EAO61667.1| exonuclease [Streptococcus agalactiae 18RS21]
 gi|77172600|gb|EAO75740.1| exonuclease [Streptococcus agalactiae COH1]
          Length = 195

 Score = 53.3 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 32/198 (16%)

Query: 5   FVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +D E  T G         Q + V+     ++I   + +                +TG
Sbjct: 7   YIAFDLEFNTVG---EHSHIIQVSAVKY-SNHQEIALFDTY---VHTKVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  +    +E         F    +T +IGYN  + D          N  D      
Sbjct: 60  ITARDIIGAPKIEI-VLTDFQSFV--GDTPLIGYNGYKSDLPLLVE----NGLDLTSQYQ 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  DL D      +   +GI          + KL  +A   GI+   AH++  D  
Sbjct: 113 ------VDLYDEAFVRRSTDLNGI---------VNLKLTTVADFLGIK-GKAHNSLEDAR 156

Query: 183 ATLALVWLIREKKPKLFE 200
            T  +     +       
Sbjct: 157 MTARVYEKFLDLDENKIY 174


>gi|296314226|ref|ZP_06864167.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           polysaccharea ATCC 43768]
 gi|296839130|gb|EFH23068.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           polysaccharea ATCC 43768]
          Length = 408

 Score = 53.3 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 44/160 (27%), Gaps = 26/160 (16%)

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
                   +TGI+         + AE +  +         C++  +N RFD  + ++ F+
Sbjct: 10  PIPQFVSGLTGISDGMVADAP-IFAEIAGELFSVLK---GCVLIAHNSRFDYTFLKHEFH 65

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R                   L  ++      P   +            L  +    GI  
Sbjct: 66  RAGI----------GFSSPALCSVQLSRCLYPQFYK----------HSLDSIIERLGIVV 105

Query: 172 VNAHDAKADVYATLALVWLIREKK--PKLFEYLYDYRNKN 209
            + H A ADV A    +     +          +   N  
Sbjct: 106 EDRHRAMADVSALCDYLEYSLSEHGVEAWIRQCFRLMNPK 145


>gi|226288880|gb|EEH44392.1| phosphoglucomutase [Paracoccidioides brasiliensis Pb18]
          Length = 806

 Score = 53.3 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 35/134 (26%), Gaps = 21/134 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKP-------ADDYL 52
           T+  V  D E  G D   D+  Q      D   + +E    E     P        D  +
Sbjct: 7   TDPLVWIDCEMTGLDPRTDKIIQICCFITDSNLDLVEPNGFEAVIHYPKSVLDNMNDWCI 66

Query: 53  PDPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYS 106
                    G T      L         +  +  +           ++  N++  D  + 
Sbjct: 67  ------KTHGQTGLTAAVLSSTTTPTAAAEGLLAYIKKHVPQKRIGLLAGNSVHTDKAFL 120

Query: 107 RNIFYRNFYDSYRW 120
               Y +  +   +
Sbjct: 121 ACEPYADVLEWLHY 134


>gi|320163436|gb|EFW40335.1| REXO2 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 180

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 14/113 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPDPEA 57
           +  D E  G DV+ +   + A +  D +   +           +    +  D       A
Sbjct: 9   IWVDLEMTGLDVSTETIIEMACIVTDSRGNILAEGPDIIIHQPDEVLDRMNDWCKEHHGA 68

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRN 108
             +T              AE    +  F        C++  N I  D  +   
Sbjct: 69  SGLT----AAVRASTTSLAEAEEVMLAFVREHTSKGCVLAGNTIHMDKRFLDR 117


>gi|289626405|ref|ZP_06459359.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289649559|ref|ZP_06480902.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298486356|ref|ZP_07004418.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159084|gb|EFI00143.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330866329|gb|EGH01038.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330889890|gb|EGH22551.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
          Length = 180

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 23/192 (11%)

Query: 2   TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E      G  VA     +     V++   +++  E  F +PA   +     
Sbjct: 1   MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPVLTHFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T I  Q ++           +  ++ S     ++G+                  +  
Sbjct: 60  RELTHI-NQSSIDSAAPLTAVWPQFERWLSHHRARVLGW----------------ASWGD 102

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176
           Y         R+  LD   +         ++           L       G++     H 
Sbjct: 103 YDRQQLEEEWRYHRLDSALSSMPHVNLKQRFAQARQLQKPMGLNSALQLAGMQFTGQQHR 162

Query: 177 AKADVYATLALV 188
           A  D   T  L+
Sbjct: 163 ALVDARNTARLL 174


>gi|169634394|ref|YP_001708130.1| oligoribonuclease [Acinetobacter baumannii SDF]
 gi|169797233|ref|YP_001715026.1| oligoribonuclease [Acinetobacter baumannii AYE]
 gi|213155973|ref|YP_002318018.1| oligoribonuclease Orn [Acinetobacter baumannii AB0057]
 gi|215484674|ref|YP_002326909.1| Oligoribonuclease [Acinetobacter baumannii AB307-0294]
 gi|229577105|ref|YP_001083587.2| oligoribonuclease [Acinetobacter baumannii ATCC 17978]
 gi|239500755|ref|ZP_04660065.1| oligoribonuclease [Acinetobacter baumannii AB900]
 gi|293610306|ref|ZP_06692607.1| oligoribonuclease [Acinetobacter sp. SH024]
 gi|301346492|ref|ZP_07227233.1| oligoribonuclease [Acinetobacter baumannii AB056]
 gi|301509982|ref|ZP_07235219.1| oligoribonuclease [Acinetobacter baumannii AB058]
 gi|301594203|ref|ZP_07239211.1| oligoribonuclease [Acinetobacter baumannii AB059]
 gi|332851262|ref|ZP_08433335.1| oligoribonuclease [Acinetobacter baumannii 6013150]
 gi|332866131|ref|ZP_08436846.1| oligoribonuclease [Acinetobacter baumannii 6013113]
 gi|332874063|ref|ZP_08441998.1| oligoribonuclease [Acinetobacter baumannii 6014059]
 gi|169150160|emb|CAM88054.1| oligoribonuclease [Acinetobacter baumannii AYE]
 gi|169153186|emb|CAP02276.1| oligoribonuclease [Acinetobacter baumannii]
 gi|193076335|gb|ABO10985.2| oligoribonuclease [Acinetobacter baumannii ATCC 17978]
 gi|213055133|gb|ACJ40035.1| oligoribonuclease Orn [Acinetobacter baumannii AB0057]
 gi|213985933|gb|ACJ56232.1| Oligoribonuclease [Acinetobacter baumannii AB307-0294]
 gi|292827538|gb|EFF85902.1| oligoribonuclease [Acinetobacter sp. SH024]
 gi|322506755|gb|ADX02209.1| Oligoribonuclease [Acinetobacter baumannii 1656-2]
 gi|323516626|gb|ADX91007.1| oligoribonuclease [Acinetobacter baumannii TCDC-AB0715]
 gi|325124507|gb|ADY84030.1| oligoribonuclease [Acinetobacter calcoaceticus PHEA-2]
 gi|332730142|gb|EGJ61469.1| oligoribonuclease [Acinetobacter baumannii 6013150]
 gi|332734772|gb|EGJ65866.1| oligoribonuclease [Acinetobacter baumannii 6013113]
 gi|332737804|gb|EGJ68696.1| oligoribonuclease [Acinetobacter baumannii 6014059]
          Length = 188

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 11/131 (8%)

Query: 1   MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54
           M++      +  D E  G D   D+  + A +  D     +    V      D  L   D
Sbjct: 1   MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIHQPDRILNAMD 60

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
                  G +   ++  R  +   +   +  +F           +  N+I  D  +   +
Sbjct: 61  EWNTRQHGQSGLIERVRRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRL 120

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 121 MPELEQYFHYR 131


>gi|330903518|gb|EGH34090.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 147

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 21/151 (13%)

Query: 43  FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
           F      D   D  A+ + GIT +  +      AE +    +F       I   +N  FD
Sbjct: 10  FHVYLQPDRESDEGAIGVHGITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFD 65

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
             +  N  +       R       S  D L + R  +    +               L  
Sbjct: 66  VGFINNE-FALMGSQDRADITQHCSVLDTLMMARERHPGQRN--------------SLDA 110

Query: 163 LALANGIEHV--NAHDAKADVYATLALVWLI 191
           L    G+++     H A  D      +   +
Sbjct: 111 LCKRYGVDNSGRELHGALLDSEILADVYLAM 141


>gi|300798138|ref|NP_001178043.1| ERI1 exoribonuclease 2 [Rattus norvegicus]
          Length = 687

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+  +     +F  V ++    +IES    + +P +  +       +
Sbjct: 37  LIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+            ++           F      
Sbjct: 97  TGIKQVQV-DEGVPLKICLSQFCKWIHKLQQQKKISFATGDSEPSTPEVKPCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYNRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|296824674|ref|XP_002850692.1| oligoribonuclease [Arthroderma otae CBS 113480]
 gi|238838246|gb|EEQ27908.1| oligoribonuclease [Arthroderma otae CBS 113480]
          Length = 188

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 9/128 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE---------STEVFFCKPADDYL 52
           ++  V  D E  G D A D+  Q      D Q   +E           +    +     +
Sbjct: 7   SDPLVWVDCEMTGLDPANDKILQICCFITDAQLNLLEPAGFEAVVHQPQDVLDRMNAWCI 66

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +T  +           ++    I ++     T ++  N++  D  +     Y 
Sbjct: 67  DTHGRSGLTAASLSSTTTAEEAASDLLAYIKRYVPKQRTALLAGNSVHADRAFLAQQPYA 126

Query: 113 NFYDSYRW 120
                  +
Sbjct: 127 KALGWLHY 134


>gi|33357113|pdb|1J9A|A Chain A, Oligoribonuclease
          Length = 184

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 19/133 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G D   +R  + A +  D+    +          ++    K  D    
Sbjct: 7   KQNLIWIDLEXTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKXNDWC-- 64

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                         ++     + E     +   F           I  N+I  D  +   
Sbjct: 65  ----QKTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 120

Query: 109 IFYRNFYDSYRWS 121
                    +   
Sbjct: 121 YXPDLADYFHYRH 133


>gi|332139961|ref|YP_004425699.1| oligoribonuclease [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549983|gb|AEA96701.1| oligoribonuclease [Alteromonas macleodii str. 'Deep ecotype']
          Length = 181

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 10/130 (7%)

Query: 1   MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55
           M+    + V  D E  G D       + A +  D Q   +    V     +DD L   D 
Sbjct: 1   MSKHDSNLVWIDMEMTGLDPETCVVMEIATIVTDAQLNILAEGPVIAVHQSDDVLNNMDE 60

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
               + G +    +     +   E S +   F           +  N I  D  +     
Sbjct: 61  WCTRVHGESGLTARCRESKISVEEASAQTIAFLEQWVDAGKSPLCGNTIGQDRRFMVKYM 120

Query: 111 YRNFYDSYRW 120
                  +  
Sbjct: 121 PELEAYFHYR 130


>gi|163941161|ref|YP_001646045.1| exonuclease [Bacillus weihenstephanensis KBAB4]
 gi|163863358|gb|ABY44417.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           weihenstephanensis KBAB4]
          Length = 281

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 64/261 (24%), Gaps = 29/261 (11%)

Query: 1   MTN--HFVIYDYETFGRDVALDR----PAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
           M N  HF+++D E                    V++D    + I                
Sbjct: 1   MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIDVSTMKVIGEFSEL---VKPSAPL 56

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +TGIT +  +  G    +   +  QF    ++  + +    +         Y  
Sbjct: 57  TRHTTKLTGITKKDLIGVG-NFPQIIEKFIQFIGE-DSIFVSWGKEDYRFLSQDCTLYGV 114

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                        SR+D+   +   Y    +    PS         L             
Sbjct: 115 ECPCMEKE-----SRFDVQKFVFQAYEELFE--HTPSLQFAVDQLGLT--------WEGK 159

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
            H A AD   T  +   +  +   + +    +     ++     +     +         
Sbjct: 160 QHRALADAENTANIFLKVYGE-RDINKRYKRHGELELVKNGKLTEKAKKRMRKWVFKELR 218

Query: 234 RSNTALIAPVAWHPRYKDSVI 254
           ++        A+        I
Sbjct: 219 KNTERPFVWSAFESSDTWESI 239


>gi|259502770|ref|ZP_05745672.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
 gi|259169273|gb|EEW53768.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
          Length = 178

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 30/192 (15%)

Query: 4   HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +F+  D+ET  G+  +         + + R  +  +            +  +   V I G
Sbjct: 2   NFIAMDFETASGKRYSACSL----ALTIVRNNQIADEFYTLINPQTPFFWRN---VQIHG 54

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  +          E    I  F       ++  +N RFD+   ++       +      
Sbjct: 55  IHERDVANAP-TFPEVWEHIKGF--YTPDKLVIAHNNRFDNGVLKSTLEHYGIEPPA--- 108

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 +  LD + +                G +++KL  +  A  I+  + H+A  D  
Sbjct: 109 ------YQTLDTVVSSRRLL----------PGLSNYKLNTVCAALNIDLHHHHNALDDAQ 152

Query: 183 ATLALVWLIREK 194
           A   ++    + 
Sbjct: 153 ACANILLYQGQH 164


>gi|256787574|ref|ZP_05526005.1| oligoribonuclease [Streptomyces lividans TK24]
          Length = 196

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 55/201 (27%), Gaps = 45/201 (22%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFITGIT 64
           V  D E  G  ++ D   + A +  D +   +        +P +  L   PE V      
Sbjct: 2   VWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVIRPPERALETMPEVVR----- 56

Query: 65  PQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
            +     G+             EA+    + +    P    +  N++  D  +       
Sbjct: 57  -EMHTASGLLAELDGGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGF------- 108

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
              D             D+  +      + P                    A  N  E  
Sbjct: 109 LLRDMATLEGYLHYRIVDVSSIKELARRWYPR-------------------AYFNSPEKN 149

Query: 173 NAHDAKADVYATLALVWLIRE 193
             H A AD+  ++A +   RE
Sbjct: 150 GNHRALADIRESIAELRYYRE 170


>gi|166240304|ref|XP_001733024.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4]
 gi|165988531|gb|EDR41046.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4]
          Length = 483

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 52/193 (26%), Gaps = 24/193 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + +D ET G   + D   +   V +     +       + +P       P +  I  +T 
Sbjct: 302 ICFDLETSGV-TSSDTIIEIGAVEL-IDGCRTGVIFQSYAQPKAQ--IHPVSEQIHQLTS 357

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            + +    +E      +  F        +  +N+ FD         R             
Sbjct: 358 LQLMSAPPIEI----ILASFMDWVGNSPLVAHNLAFDKRILIQELIRYNIP--------- 404

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +++  +      +        +    + S KL+     N +     H A  D     
Sbjct: 405 ---FNIDHICFCTMKYFKKIYNGLNYSLDSISQKLK----INKLLLRKTHGALIDSEILA 457

Query: 186 ALVWLIREKKPKL 198
            +   +    P  
Sbjct: 458 IIYTHLLIVDPNT 470


>gi|42782602|ref|NP_979849.1| exonuclease [Bacillus cereus ATCC 10987]
 gi|42738528|gb|AAS42457.1| exonuclease family protein [Bacillus cereus ATCC 10987]
          Length = 281

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 61/260 (23%), Gaps = 27/260 (10%)

Query: 1   MTNH--FVIYDYETFGRDVALD---RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPD 54
           M N   F+++D E   R    D          V+++    + I                 
Sbjct: 1   MKNTTHFIVFDIERNFRPYKSDDPSEIVDIGAVKIEASTMKVIGEFSEL---VKPGARLT 57

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
                +TGIT +  +       +   R  QF    ++  + +    +         +   
Sbjct: 58  RHTTKLTGITKKDLMNVEK-FPQIIERFIQFIGE-DSIFVTWGKEDYRFLVHDCTLHGVD 115

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                        R DL   +   Y    +    PS         L              
Sbjct: 116 CPCMEKE-----RRIDLQKFVFQAYEELFE--HTPSLQSAVEQLGLT--------WEGKQ 160

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           H A AD   T  ++     ++    +    +     +      +     +         +
Sbjct: 161 HRALADAENTANILLKAYSERDIT-KRYKRHGELELVENGKLTEKAKKKMRKWVFKEMRK 219

Query: 235 SNTALIAPVAWHPRYKDSVI 254
           +     A   +        I
Sbjct: 220 NTERPFAWSTFESSDTWESI 239


>gi|312865719|ref|ZP_07725943.1| DNA polymerase III, epsilon subunit [Streptococcus downei F0415]
 gi|311098840|gb|EFQ57060.1| DNA polymerase III, epsilon subunit [Streptococcus downei F0415]
          Length = 196

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 28/195 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            +++ +D E F     +    Q + V+     E++   + +                +TG
Sbjct: 5   ENYIAFDLE-FNTVAGVSHIIQVSAVKF-AGHEEVAHFDSYAYS---SVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  K  +   +E +       F     T +IGYN ++ D          N  D      
Sbjct: 60  ITADKIAKAPKLE-QVLADFRTFIGE--TPLIGYNALKSDLPLLAE----NGLD------ 106

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            + + R D+ +      +   +GI          + +L  +A   GI    +HD+  D  
Sbjct: 107 LSEHYRVDVFEQAFERRSLDLNGIA---------NLQLHTVAEFLGIS-GRSHDSLEDAR 156

Query: 183 ATLALVWLIREKKPK 197
            T  +     E    
Sbjct: 157 MTALVYEKFLELDEN 171


>gi|238749568|ref|ZP_04611073.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380]
 gi|238712223|gb|EEQ04436.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380]
          Length = 219

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 69/265 (26%), Gaps = 54/265 (20%)

Query: 7   IYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + D ET G D       + A V  VD     + +        + D     +A+ I  IT 
Sbjct: 5   VIDTETCGLD---GGIVEIASVDVVDG---VLSNPMSDLV--SPDRPISLDAMVIHHITE 56

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +            +  + ++    +   + +N              R         W   
Sbjct: 57  EMVEGMPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW--- 97

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L + R +Y         P         +       +  E++  H A  D Y T 
Sbjct: 98  ---ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSIPENLYPHRALYDCYVTA 145

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245
           AL+  I   +   +             + +      PL+  +  FG  R           
Sbjct: 146 ALLQRI--MQDSGWN-----------AEQMAEMTQQPLLLQTFKFGKYRGKNIEQIAR-Q 191

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   ++         +   L  
Sbjct: 192 DPDYLRWMLASISDLTPDMRHTLTH 216


>gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 302

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 29/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET   +   +         V       E    F  KP +     P  ++I GI 
Sbjct: 3   FVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+    +     E    I  +    +  ++  +N  FD    R                 
Sbjct: 58  PEDVENE-RTFNEIWEEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D  D+    + ++   +   +      + KL  ++ A G E  + H    D  A 
Sbjct: 97  --KTLDFYDIPYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARAC 153

Query: 185 LALV 188
             ++
Sbjct: 154 ANIL 157


>gi|323496850|ref|ZP_08101887.1| ribonuclease T [Vibrio sinaloensis DSM 21326]
 gi|323318109|gb|EGA71083.1| ribonuclease T [Vibrio sinaloensis DSM 21326]
          Length = 220

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D   +    ST  F  +P +    + EA+   G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLKMDENGDLQPASTIHFHVEPFEGANIEKEALDFIG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           +  P   LR  + E+E  + I++        +  +  II  +N +FD  +      R+  
Sbjct: 80  LRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDHSFVMQASERSKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                     A     ++  AH
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------AAGMDFDNKEAH 182

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  K
Sbjct: 183 SALYDTQKTAELFCGIVNK 201


>gi|322805638|emb|CBZ03203.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog
           [Clostridium botulinum H04402 065]
          Length = 549

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF 44
            + V++D E+ G ++  D   Q AG++++ + E IES + FF
Sbjct: 493 ENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFF 534


>gi|322821637|gb|EFZ27903.1| hypothetical protein TCSYLVIO_5871 [Trypanosoma cruzi]
          Length = 379

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 46/196 (23%), Gaps = 21/196 (10%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
            ++ D E       D       +F GV +D +   ++    F         P        
Sbjct: 70  IIVVDVEATCESNNDNYHHEIIEFPGVLIDVRRGIVDKRRSFRSYVKPWRNPVLSEFCKK 129

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           +TGI+ +               + + F      T  IG       D       +   +  
Sbjct: 130 LTGISQEDVDNAPG-----LPDVVKAFERWYRETIPIGAKVAFAADGPWDFKNFIYEHSI 184

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
            R         ++ LD+             +           L+ + L         H  
Sbjct: 185 LRDHVSFPGIFYEYLDIRTTFA------HHFNRGAPIKLDAMLRRMRLRF---EGRPHCG 235

Query: 178 KADVYATLALVWLIRE 193
             D      L   +  
Sbjct: 236 FDDAVNIARLAVAMMR 251


>gi|108757524|ref|YP_635264.1| oligoribonuclease [Myxococcus xanthus DK 1622]
 gi|108461404|gb|ABF86589.1| oligoribonuclease [Myxococcus xanthus DK 1622]
          Length = 183

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 38/146 (26%), Gaps = 10/146 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFIT 61
             FV  D E  G D       +   +        I   E    +P +  L  +P    + 
Sbjct: 6   QRFVWLDLEMTGLDPETCSIIEVGVIITGPDLRPIAEIERVIWQPEEVLLRMEPVVREMH 65

Query: 62  GITP--QKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
                 +K           E +    + +  ++    + G N+I  D  +     Y    
Sbjct: 66  TRNELLEKVRASNTSLRVAERDVMALVTEHCALGEGILAG-NSIHTDRRFLIR--YMPLL 122

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAF 141
           + Y        +   +L         
Sbjct: 123 ERYLHYRMVDVTSLKVLTRAWYPNLV 148


>gi|71020669|ref|XP_760565.1| hypothetical protein UM04418.1 [Ustilago maydis 521]
 gi|46100453|gb|EAK85686.1| hypothetical protein UM04418.1 [Ustilago maydis 521]
          Length = 606

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 56/204 (27%), Gaps = 39/204 (19%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPDP 55
            V  D E  G  V   DR  + A +  D Q   I+S         +          +   
Sbjct: 423 LVWIDCEMTGLSVENGDRLLEIACIITDGQLNPIDSGVSYVISTPQSVLDGMNHWCVNQH 482

Query: 56  EAVFITGITPQKA-LRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIF 110
               ++G+T +          A     I  +       PNT  +  N +  D  +     
Sbjct: 483 ---ALSGLTAECLDANRSYPHASVRTAILAYVRDRIPTPNTACLAGNTVHADKAFLHAEM 539

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
               +  +           D+  +   +  +  D   W   +                  
Sbjct: 540 PELIHHLHYR-------IVDVSSIKELVKRWYGDNKLWNPSEPPK--------------- 577

Query: 171 HVNAHDAKADVYATLALVWLIREK 194
           H+  H A  D+ A++  +   R +
Sbjct: 578 HMPNHRALNDINASIQELKWYRSE 601


>gi|330984983|gb|EGH83086.1| exonuclease RNase T and DNA polymerase III [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 153

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 19/154 (12%)

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
            D  +   +   I GIT   AL  G+ + E      + +      +   +N+ FDD   R
Sbjct: 4   PDGRVIPNDVTAIHGITTDMALEHGIPKQEALGGFLRIYEQAG--LRVAHNVSFDDRIRR 61

Query: 108 NIFYRNFYD---------SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF 158
               R   +             +  +  +        + I A   +  + P+  +     
Sbjct: 62  IATKRFIGEQAANEFKTVPNYCTCQSSKNIVQCPPTAKMIRAGFGNQFKVPTVTE----- 116

Query: 159 KLQDLALANGIEHVNAHDAKADVYATLALVWLIR 192
               +    G E V  H A+ D  A   + + + 
Sbjct: 117 ---AMRHFTGEELVGGHRARQDSEACARIYFAMN 147


>gi|307706777|ref|ZP_07643582.1| exonuclease family protein [Streptococcus mitis SK321]
 gi|307617862|gb|EFN97024.1| exonuclease family protein [Streptococcus mitis SK321]
          Length = 196

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R  ++I++ + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGQEIDAYDSY---VHTSVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE E  +    F       ++GYN  + D               Y  
Sbjct: 58  TGITAETLKDAPPVE-EVIKEFQDFVGSLP--MVGYNAAKSDLPILAEHGL-----DYSR 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            +       DL D      +    GI          + KLQ +A     +   +H++  D
Sbjct: 110 QYK-----VDLYDEAFERRSSDLHGIA---------NLKLQTVASFLEFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTAHVYESFLESDQ 170


>gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC
           13124]
 gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 302

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 29/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET   +   +         V       E    F  KP +     P  ++I GI 
Sbjct: 3   FVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+    +     E    I  +    +  ++  +N  FD    R                 
Sbjct: 58  PEDVENE-RTFNEIWEEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D  D+    + ++   +   +      + KL  ++ A G E  + H    D  A 
Sbjct: 97  --KTLDFYDIPYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARAC 153

Query: 185 LALV 188
             ++
Sbjct: 154 ANIL 157


>gi|297698260|ref|XP_002826232.1| PREDICTED: ERI1 exoribonuclease 2-like isoform 1 [Pongo abelii]
          Length = 689

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +IES    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIESEFQAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+     N       +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIHKIQQQKNIIFATGVSEPSTSEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  L     +  +   D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLFKT--SEKSLKDDIXATYKLFYRRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTSLLAWKMIRD 232


>gi|262274550|ref|ZP_06052361.1| ribonuclease T [Grimontia hollisae CIP 101886]
 gi|262221113|gb|EEY72427.1| ribonuclease T [Grimontia hollisae CIP 101886]
          Length = 223

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 55/201 (27%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D       + T  F   P +    + EA+   G
Sbjct: 20  VVIDVETAGFNPQTDALLEICAVTLKMDEDGWLSPDKTIHFHVTPFEGANLEQEALAFNG 79

Query: 63  ITPQK-----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFY 115
           I         A+ +     E  + I +          I+  +N  FD  +      R   
Sbjct: 80  IKDPFSPLRGAVDEEHALKEIFKLIRKEQKASGCQRAIMVAHNANFDHSFVMAASERANL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                   N    +   D            +             L       GI   N  
Sbjct: 140 K------RNPFHPFATFDTAALSGLALGQTV-------------LAKACKTAGIAFDNNE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 181 AHSALYDTERTAELFCEIVNR 201


>gi|90413373|ref|ZP_01221366.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
 gi|90325615|gb|EAS42084.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
          Length = 207

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 52/196 (26%), Gaps = 20/196 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  V  D ET   D         A   +     +I +++            D  ++ I  
Sbjct: 28  DELVSVDCETTSLDPHSAELVTIAATVIKD--NRILTSKSIHLTLRAPSSLDANSIAIHR 85

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  Q     G+ E E    +  F    N  ++GY+         R       +       
Sbjct: 86  IRHQDLR-AGLDEKEALTTLLDFI--GNRPLVGYHIRYDKTILDRYYRRLFGFALPNKLV 142

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           +  +   D L+ +     +                  L+ ++    +     HDA  D  
Sbjct: 143 EVSHLYHDRLERLLPNAYY---------------DLSLEAISRHLDLPVPERHDALEDTI 187

Query: 183 ATLALVWLIREKKPKL 198
               +   ++      
Sbjct: 188 TAALIYVRLKHGDIPT 203


>gi|28869227|ref|NP_791846.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213967497|ref|ZP_03395645.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301386461|ref|ZP_07234879.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302059344|ref|ZP_07250885.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302131217|ref|ZP_07257207.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852468|gb|AAO55541.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213927798|gb|EEB61345.1| exonuclease [Pseudomonas syringae pv. tomato T1]
 gi|331016942|gb|EGH96998.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 180

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 7/119 (5%)

Query: 2   TNHFVIYDYE-TF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E T    G  VA     +     V++   +++  E  F +PA   L     
Sbjct: 1   MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFY 115
             +T I+                +  ++ S     ++G+ +   +D       + R+  
Sbjct: 60  KELTHISQSNIDSA-APLTTVWPQFERWLSHHRARVVGWASWGDYDRQQLEEEWRRHQL 117


>gi|323450230|gb|EGB06112.1| hypothetical protein AURANDRAFT_65802 [Aureococcus anophagefferens]
          Length = 1190

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 58/202 (28%), Gaps = 24/202 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + YD ET     A     Q A            S E F      +   D  A  + G T 
Sbjct: 44  IAYDLETTSAWPATAEVVQLAFT------NVANSDEHFQALVLPEGGVDGGAAAVHGYTK 97

Query: 66  QKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
               +   +  +     +R            ++  +N    D +   I  R        +
Sbjct: 98  ASLKKKRALPFDVAWGMARDWLDAVRDDRPVVLAAHNG---DRFDHPILRRLVAKHAAEA 154

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180
                  +D L + R  +              G  S  L  L + A G     AHDA AD
Sbjct: 155 DLASALWFDTLPLAREAFP----------DRRGPGSHTLGRLFSDATGGPLGGAHDALAD 204

Query: 181 VYATLALVWLIREKKPKLFEYL 202
             A   +   +  ++ + ++  
Sbjct: 205 ARAVAEVWPWLVARRGEAWDDH 226


>gi|306841731|ref|ZP_07474417.1| DNA polymerase III, epsilon chain [Brucella sp. BO2]
 gi|306288136|gb|EFM59523.1| DNA polymerase III, epsilon chain [Brucella sp. BO2]
          Length = 193

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 25/179 (13%)

Query: 19  LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78
            DR      V+++   E +  +      P  D  P  EA  I G          +   E 
Sbjct: 3   YDRIITLGAVKIEGD-ELLTQSLYLIFDPRKDSSPQAEA--IHGFDNWMTRYQDLFH-EL 58

Query: 79  SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138
           +  I ++FS  +   +  +N +FD +Y +  F +   D                   + +
Sbjct: 59  AAPIRKWFSWADE--VVAHNAQFDIHYIQREFRKAEVDMLD----------------QPV 100

Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPK 197
           Y       +    D       L  + L       + H A  D Y T  L    +     
Sbjct: 101 YCTMEGARRLWRGDPAKLDHCLAKIGL---ARTGHRHGALEDAYLTAGLYLHQQGVAKP 156


>gi|237722954|ref|ZP_04553435.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447476|gb|EEO53267.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 198

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 27/187 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
             +F   D+ET   +           V V    +          +P  +Y        + 
Sbjct: 1   MINFAAIDFET--ANGKRTSVCSVGVVIVRE-GKITNKIY-RLIRPRPNY-YTQWTTAVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T    +       E    I       +   +  +N  FD+        R  ++ Y  +
Sbjct: 56  GLTYDDTMEVDE-FPEVWAEIKPLI---DGLPLVAHNSPFDE-----GCLRAVHELYDMT 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           + +    +      R                    + +L  +A   G    N H A AD 
Sbjct: 107 YPD----YKFYCTCRTSRKVF---------GKDLPNHQLHTVAERCGYHLENHHHALADA 153

Query: 182 YATLALV 188
            A   + 
Sbjct: 154 EACAQIA 160


>gi|312962237|ref|ZP_07776729.1| exonuclease [Pseudomonas fluorescens WH6]
 gi|311283574|gb|EFQ62163.1| exonuclease [Pseudomonas fluorescens WH6]
          Length = 180

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 25/193 (12%)

Query: 2   TNHFVIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H++I D E T   G     +    +     V+RQ  +++  +  F +P    L  P  
Sbjct: 1   MPHWLIIDLEATTDEGGWPVTEMEVIEIGASLVNRQGRELDHFQ-RFVRPLRRPLLTPFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYD 116
             +T IT            E      ++       + G+ +   +D       + R+   
Sbjct: 60  RQLTHITQANI-DAAAPVTEVWPLFERWLGQHQARLEGWASWGDYDRVQLELEWQRHG-- 116

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAH 175
                          L    A         ++           L       G++ H   H
Sbjct: 117 ---------------LASALADTPHVNLKQRFAKARRLDKPLGLNGALQLAGMQFHGQQH 161

Query: 176 DAKADVYATLALV 188
            A  D   T  L+
Sbjct: 162 RALEDARNTARLL 174


>gi|3885327|gb|AAC77855.1| hypothetical protein [Arabidopsis thaliana]
          Length = 227

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLP 53
               V  D E  G +V +DR  + A +  +             +  T+    K  D    
Sbjct: 24  KQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQT 83

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
              A  +T     K L   + E E  +++ +F          ++  N++  D  + + 
Sbjct: 84  HHGASGLTK----KVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKK 137


>gi|262165240|ref|ZP_06032977.1| ribonuclease T [Vibrio mimicus VM223]
 gi|262024956|gb|EEY43624.1| ribonuclease T [Vibrio mimicus VM223]
          Length = 224

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 59/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D        ST  F  +P +    +  A+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGNLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 80  IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201


>gi|315650719|ref|ZP_07903774.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487023|gb|EFU77350.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 220

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 52/197 (26%), Gaps = 19/197 (9%)

Query: 6   VIYDYETFGRDVALDRP------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           ++ D E    +             +   + +D  +++I S    + KP  +    P    
Sbjct: 4   IVVDLEMNSVEKKYKNLDCTMETIEIGAIMLDENYQEISSFRT-YVKPEYNNRIRPLISR 62

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT    +       E  +    +    +  I  Y     D                 
Sbjct: 63  LTGITYDMVMNAPK-FDEALKMFSNWCLGVSDDIKIYAWSENDYKQILKE---------- 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            S     S  D   V    +             +   S K   L +A        H A  
Sbjct: 112 ISLKKYKSSLDEERVYLTEWHDFQAEFDTKLGFEKQLSLK-TALDMAGVDFLGREHSALD 170

Query: 180 DVYATLALVWLIREKKP 196
           D   T  L  +  +++ 
Sbjct: 171 DARNTAKLFNIFNDREM 187


>gi|307700293|ref|ZP_07637333.1| exonuclease [Mobiluncus mulieris FB024-16]
 gi|307614504|gb|EFN93733.1| exonuclease [Mobiluncus mulieris FB024-16]
          Length = 141

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 14/152 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFI 60
              FV  D+ET   +           V  D + +  +S      +P  +    +P  V++
Sbjct: 1   MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLL-RPHPEVDYFNPANVWV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         ++ + ++  F        I  +N+ FD Y        +   S   
Sbjct: 58  HGITSEDVQDAPQ-WSDIADQVMTFI---GDRPIVAHNMAFDGYVL------SDLASLYG 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152
           + +  N R+  + + R I A      + P R+
Sbjct: 108 TEEIPNRRFCTVRLARKILADKLAKGKTPQRN 139


>gi|254525014|ref|ZP_05137069.1| oligoribonuclease [Stenotrophomonas sp. SKA14]
 gi|219722605|gb|EED41130.1| oligoribonuclease [Stenotrophomonas sp. SKA14]
          Length = 190

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 13/128 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
              +  D E  G D   D   + A V  D Q   +     F        +   EA+    
Sbjct: 9   ERLIWIDLEMTGLDTDNDSIIEIATVVTDAQLNVLAEGPEFAI---HHPVETLEAMDEWN 65

Query: 59  -FITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112
                 +   Q+ +       +   +   F +         +  N+I  D  +      R
Sbjct: 66  RNQHRRSGLWQRVVDSTTTLGQAEAQTVNFLAQWIPAGLSPMCGNSICQDRRFLHRQMPR 125

Query: 113 NFYDSYRW 120
                +  
Sbjct: 126 LEKYFHYR 133


>gi|84488969|ref|YP_447201.1| 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
 gi|84372288|gb|ABC56558.1| predicted 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
          Length = 445

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 63/218 (28%), Gaps = 35/218 (16%)

Query: 2   TNHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
              +V+ D E    +    +        + +      +E     +     +   D   + 
Sbjct: 1   MRDYVVMDLE----NPNFRQNSICAIGVMLIRNN-NVVER---KYSLINPEDTFDNINIQ 52

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           IT I P    +      E+   I  + S     +I  +NI +D         R   +   
Sbjct: 53  ITKIAPHMIKQSP-TLPEYWSEISSWLSNN---VIVGHNITYDLRVLTKSLQRYDLEVPE 108

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
           +++                       +    ++    S+KL+++A    I   N H+A  
Sbjct: 109 FNY--------------------CCTLTQSRKNLDLPSYKLENIAKKLHI-IYNPHNAIE 147

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
           D  A   L   I    P     +  Y+ K +       
Sbjct: 148 DARAAYELFEYINRHNPIGTNQVKQYKYKPKTESYDPK 185


>gi|257484494|ref|ZP_05638535.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330986187|gb|EGH84290.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331013242|gb|EGH93298.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 180

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 23/192 (11%)

Query: 2   TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E      G  VA     +     V++   +++  E  F +PA   +     
Sbjct: 1   MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPVLTHFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T I  Q ++           +  ++ S     ++G+                  +  
Sbjct: 60  RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARVLGW----------------ASWGD 102

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176
           Y         R+  LD   +         ++           L       G++     H 
Sbjct: 103 YDRQQLEEEWRYHRLDSALSSMPHVNLKQRFAQARQLQKPMGLNSALQLAGMQFTGQQHR 162

Query: 177 AKADVYATLALV 188
           A  D   T  L+
Sbjct: 163 ALVDARNTARLL 174


>gi|238758483|ref|ZP_04619660.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236]
 gi|238703387|gb|EEP95927.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236]
          Length = 187

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 40/191 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F + D ET G         + A +  VD                + D     +A+ I  I
Sbjct: 3   FRVIDTETCGL---EGGIVEVASIDVVDGVLN-----NPMSDLISPDRPISIDAMVIHHI 54

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +            +  + ++    +   + +N              R         W 
Sbjct: 55  TEEMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW- 97

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L + R +Y         P         +       +  +++  H A  D Y 
Sbjct: 98  -----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYV 143

Query: 184 TLALVWLIREK 194
           T AL+  I + 
Sbjct: 144 TAALLQRIMKD 154


>gi|307776322|pdb|2XRI|A Chain A, Crystal Structure Of Human Eri1 Exoribonuclease 3
          Length = 224

 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 33  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 92

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 93  IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 140

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 141 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 200

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 201 KNIANIMKTLAYR 213


>gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC
           824]
 gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing
           BRCT domain [Clostridium acetobutylicum ATCC 824]
          Length = 306

 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 29/191 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F   D+ET   +   + P     V V +    +E +         +    P  + I GI
Sbjct: 2   KFTAIDFET--ANEKRNSPCSIGIVVV-KDGHVVEKSHHLIR--PKEMRFMPINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P    ++     +   +I  +F      ++  +N  FD    R        +   +++ 
Sbjct: 57  RPAMVEKEPE-FDKVWEKIKHYFDD---TLVIAHNASFDISVLRKSAELYNIELPEFNY- 111

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   + + R  Y              G  + KL  +    G E    HDA  D  A
Sbjct: 112 -----ICTMKLARNFY-------------KGIENAKLNTVNNFLGYEF-RHHDALYDALA 152

Query: 184 TLALVWLIREK 194
              ++  I ++
Sbjct: 153 CSNIMLSISKE 163


>gi|328774277|gb|EGF84314.1| hypothetical protein BATDEDRAFT_9096 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 188

 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/116 (11%), Positives = 32/116 (27%), Gaps = 8/116 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
              V  D E  G D+  D   + A +  D     ++             +   +   +  
Sbjct: 8   KPLVWIDLEMTGLDLERDVIIEIACIITDGNLNAVQERYDLVLHQPKSVMDQMNDWCIQT 67

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIF 110
            G +   ++ +   +   +    I  F           ++  N++  D  +     
Sbjct: 68  HGESGLTKQVIESTLTLKDAEATILDFVKRHIPKQREGVLAGNSVHVDRQFLHKHM 123


>gi|308177366|ref|YP_003916772.1| oligoribonuclease [Arthrobacter arilaitensis Re117]
 gi|307744829|emb|CBT75801.1| putative oligoribonuclease [Arthrobacter arilaitensis Re117]
          Length = 203

 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 27/121 (22%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD------------ 49
           +   V  D E  G D+  D   + A +  D   + ++       KP              
Sbjct: 5   SEKIVWIDCEMTGLDLVNDALIEVAVLITDSDLQIVDEGIQVVIKPEPAALAQMDDFVRN 64

Query: 50  -----DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
                  LP+ E     GI   +A R           I +    PN  ++G N++  D  
Sbjct: 65  MHMVSGLLPELE----NGIAMDEAQRL------VIDYIKKHVPEPNKALLGGNSVGTDKN 114

Query: 105 Y 105
           +
Sbjct: 115 F 115


>gi|290960166|ref|YP_003491348.1| oligoribonuclease [Streptomyces scabiei 87.22]
 gi|260649692|emb|CBG72807.1| oligoribonuclease [Streptomyces scabiei 87.22]
          Length = 200

 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 56/206 (27%), Gaps = 45/206 (21%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
           M +  V  D E  G  ++ D   + A +  D +   +        +P D  L   PE V 
Sbjct: 1   MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGDGVDIVIRPPDAALETMPEVVR 60

Query: 60  ITGITPQKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
                 Q     G+             EA+    + +    P    +  N +  D  +  
Sbjct: 61  ------QMHTASGLLDALAGGTTLADAEAQVLAYVREHVKEPRKAPLCGNTVGTDRGF-- 112

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
                   D             D+  V      + P                    A  N
Sbjct: 113 -----LLRDMPTLEGHLHYRIVDVSSVKELARRWYPR-------------------AYFN 148

Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
             E    H A AD+  ++A +   RE
Sbjct: 149 SPEKNGNHRALADIRESIAELRYYRE 174


>gi|153831795|ref|ZP_01984462.1| exonuclease KapD [Vibrio harveyi HY01]
 gi|156974798|ref|YP_001445705.1| hypothetical protein VIBHAR_02516 [Vibrio harveyi ATCC BAA-1116]
 gi|148871793|gb|EDL70616.1| exonuclease KapD [Vibrio harveyi HY01]
 gi|156526392|gb|ABU71478.1| hypothetical protein VIBHAR_02516 [Vibrio harveyi ATCC BAA-1116]
          Length = 176

 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 20/148 (13%)

Query: 3   NHFVIYDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           N  V +D E          + G         +     +D    +I     ++ KP  D +
Sbjct: 4   NRIVCFDLEMCCWNENGVGSTG------EIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEV 57

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +TGITP+K  + G    E  + + + F   N     +     DD        +
Sbjct: 58  -SLFCAELTGITPRKIEKQGRPLEEVLKSMLKNFGGRNKIYASW---GRDDLILLEECQQ 113

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
              D+    + N  + + + + ++    
Sbjct: 114 KGIDAPFTEFINLATLYRIQNRLKDKRI 141


>gi|157120012|ref|XP_001653487.1| oligoribonuclease, mitochondrial [Aedes aegypti]
 gi|157120014|ref|XP_001653488.1| oligoribonuclease, mitochondrial [Aedes aegypti]
 gi|108875101|gb|EAT39326.1| oligoribonuclease, mitochondrial [Aedes aegypti]
 gi|108875102|gb|EAT39327.1| oligoribonuclease, mitochondrial [Aedes aegypti]
          Length = 192

 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFI 60
            ++ V  D E  G +V  DR  + A V  ++  E +E   ++   +P +      E    
Sbjct: 15  QHNLVWIDLEMTGLEVEKDRILEIACVITNKNLEILERGPDIVIHEPEEVLNAMNEWCQT 74

Query: 61  TGITP---QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
                   Q      +   +  + +  F         C +  N I  D  +      +  
Sbjct: 75  NHSKTGLIQAVRESKIDLQKAEQMVLDFVKKYCPEKACPLAGNTIYMDRMFLYRYMPQLN 134

Query: 115 YDSYRW 120
              +  
Sbjct: 135 EYLHYR 140


>gi|84387084|ref|ZP_00990106.1| hypothetical protein V12B01_03993 [Vibrio splendidus 12B01]
 gi|84377945|gb|EAP94806.1| hypothetical protein V12B01_03993 [Vibrio splendidus 12B01]
          Length = 176

 Score = 53.3 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 54/202 (26%), Gaps = 38/202 (18%)

Query: 1   MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           M ++ V+ +D E          T G         +     +D     I     ++ KP  
Sbjct: 1   MNHNRVVCFDLEMCCWSEDGVGTTG------EIIEIGLAEIDLVSGTIVKRAQYYVKPEK 54

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           D +       +TGITP+K  + G       + + + F  P      +     DD      
Sbjct: 55  DEV-SLFCAELTGITPRKIEKQGRPLESVIKSMIKNFGGPKKIYAAW---GRDDLILHKE 110

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
                 +     + N  + + + + ++          +                   N  
Sbjct: 111 CIEKGIEPPFSEFLNIATLYRVQNRLKEKRIGHRAAQE-----------------AKNIE 153

Query: 170 EHVNAHDAKADVYATLALVWLI 191
                H    D Y    L   +
Sbjct: 154 WEGRQHSGYVDAYNLAKLALTM 175


>gi|329123183|ref|ZP_08251752.1| oligoribonuclease [Haemophilus aegyptius ATCC 11116]
 gi|327471528|gb|EGF16972.1| oligoribonuclease [Haemophilus aegyptius ATCC 11116]
          Length = 182

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 19/133 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
             + +  D E  G +   +R  + A +  D+    +          ++    K  D    
Sbjct: 5   KQNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWC-- 62

Query: 54  DPEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
                         ++     + E     +   F           I  N+I  D  +   
Sbjct: 63  ----QKTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVK 118

Query: 109 IFYRNFYDSYRWS 121
                    +   
Sbjct: 119 YMPDLADYFHYRH 131


>gi|313217587|emb|CBY38652.1| unnamed protein product [Oikopleura dioica]
 gi|313232309|emb|CBY09418.1| unnamed protein product [Oikopleura dioica]
          Length = 627

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 62/230 (26%), Gaps = 12/230 (5%)

Query: 5   FVIYDYETF----GRDVALDRPAQF-AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           FV  D+E                +F A +      + +      + +P          + 
Sbjct: 87  FVCIDFEATCERNNTFNYPHEIIEFPACLVHIESRKIVGEFHS-YVRPFRKAHLSDFCME 145

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT +K  +      +  ++   +           +       ++ +        +  
Sbjct: 146 LTGITQEKVDQAPY-FPQVFKQFVGWLRSYGLLDQTSDGRVKISKHTPSWTLLTDSPADI 204

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF----KLQDLALANGIEH-VNA 174
             +       D +       +   +  +               K++D+    G+E   + 
Sbjct: 205 CKFLAKQCEMDDIAFPYNWASRYCNIKKIFMSVYKPKYHRFTPKIEDMLEILGMEMRGDL 264

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
           H  K D      +   + +   ++++      NK        +     ++
Sbjct: 265 HSGKDDARNICRIAIRLIKDGAQIWQNEMYKPNKYNSSAPYYLSKPDHII 314


>gi|260769062|ref|ZP_05877996.1| ribonuclease T [Vibrio furnissii CIP 102972]
 gi|260617092|gb|EEX42277.1| ribonuclease T [Vibrio furnissii CIP 102972]
 gi|315180803|gb|ADT87717.1| ribonuclease T [Vibrio furnissii NCTC 11218]
          Length = 219

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 58/199 (29%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+   G
Sbjct: 20  VVIDVETAGFNPQTDALLEICAVTLAMDENGDLHPASTIHFHVEPFEGANLEKAALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 80  IYDPFSPLRGAVSEEHALKEIYKQVRKEQKAADCSRAIIVAHNAAFDHGFVMAASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                     A     ++  AH
Sbjct: 140 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------AAGMAFDNREAH 182

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  +
Sbjct: 183 SALYDTQQTAELFCGIVNQ 201


>gi|239997082|ref|ZP_04717606.1| oligoribonuclease [Alteromonas macleodii ATCC 27126]
          Length = 181

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 10/130 (7%)

Query: 1   MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55
           M+    + V  D E  G D       + A +  D Q   +    V     +DD L   D 
Sbjct: 1   MSKHDSNLVWIDMEMTGLDPETCVVMEIATIVTDAQLNILAEGPVIAVHQSDDVLNNMDE 60

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
               + G +    +     +   E S +   F           +  N I  D  +     
Sbjct: 61  WCTRVHGESGLTARCRESKISVEEASAQTIAFLEQWVDAGKSPLCGNTIGQDRRFMVKYM 120

Query: 111 YRNFYDSYRW 120
                  +  
Sbjct: 121 PELEAYFHYR 130


>gi|227875810|ref|ZP_03993936.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC
           35243]
 gi|227843558|gb|EEJ53741.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC
           35243]
          Length = 143

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 14/152 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFI 60
              FV  D+ET   +           V  D + +  +S      +P  +    +P  V++
Sbjct: 3   MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLL-RPHPEVDYFNPANVWV 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT +         ++ + ++  F        I  +N+ FD Y        +   S   
Sbjct: 60  HGITSEDVQDAPQ-WSDIADQVMTFI---GDRPIVAHNMAFDGYVL------SDLASLYG 109

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152
           + +  N R+  + + R I A      + P R+
Sbjct: 110 TEEIPNRRFCTVRLARKILADKLAKGKTPQRN 141


>gi|260549063|ref|ZP_05823284.1| oligoribonuclease Orn [Acinetobacter sp. RUH2624]
 gi|260407791|gb|EEX01263.1| oligoribonuclease Orn [Acinetobacter sp. RUH2624]
          Length = 188

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 11/131 (8%)

Query: 1   MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PD 54
           M++      +  D E  G D   D+  + A +  D     +    V      D  L   D
Sbjct: 1   MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIHQPDRILNAMD 60

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
                  G +   ++  R  +   +   +  +F           +  N+I  D  +   +
Sbjct: 61  EWNTRQHGQSGLIERVRRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRL 120

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 121 MPELEQYFHYR 131


>gi|86146253|ref|ZP_01064578.1| hypothetical protein MED222_16116 [Vibrio sp. MED222]
 gi|218709772|ref|YP_002417393.1| hypothetical protein VS_1784 [Vibrio splendidus LGP32]
 gi|85835964|gb|EAQ54097.1| hypothetical protein MED222_16116 [Vibrio sp. MED222]
 gi|218322791|emb|CAV18968.1| hypothetical protein VS_1784 [Vibrio splendidus LGP32]
          Length = 176

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 54/202 (26%), Gaps = 38/202 (18%)

Query: 1   MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           M ++ V+ +D E          T G         +     +D     I     ++ KP  
Sbjct: 1   MNHNRVVCFDLEMCCWSEDGVGTTG------EIIEVGLAEIDLASGTIVKRAQYYVKPEK 54

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           D +       +TGITP+K  + G       + + + F  P      +     DD      
Sbjct: 55  DEV-SLFCAELTGITPRKIEKQGRPLESVIKSMIKNFGGPKKIYAAW---GRDDLILHKE 110

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
                 +     + N  + + + + ++          +                   N  
Sbjct: 111 CIEKGIEPPFSEFLNIATLYRVQNRLKEKRIGHRAAQE-----------------AKNIE 153

Query: 170 EHVNAHDAKADVYATLALVWLI 191
                H    D Y    L   +
Sbjct: 154 WEGRQHSGYVDAYNLAKLALTM 175


>gi|307313309|ref|ZP_07592933.1| hypothetical protein SinmeBDRAFT_5759 [Sinorhizobium meliloti
          BL225C]
 gi|307320758|ref|ZP_07600169.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306893576|gb|EFN24351.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306899322|gb|EFN29957.1| hypothetical protein SinmeBDRAFT_5759 [Sinorhizobium meliloti
          BL225C]
          Length = 178

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
           V  D+E    +     P + A V  D        +  +  +PA D+     EA  + GI
Sbjct: 2  IVFLDFEASSLNK-KSFPIEVAWVFQD------GRSRSYLIRPAPDWTDWSAEAEEVHGI 54

Query: 64 TPQKALRDGVVEAEFSRRIHQFFS 87
          +      +G+  A  +  + +  +
Sbjct: 55 SRGMLRAEGLPVAFVAEEMIRELA 78


>gi|238020074|ref|ZP_04600500.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748]
 gi|237863598|gb|EEP64888.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748]
          Length = 209

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   +   +     A + V +  + I+               D E + I 
Sbjct: 1   MLDFVALDFET--ANKFKNSACSLAVITV-KDGQIIKKAYSLIK--PPFMSFDDECIEIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+  + +     +    I++  +     I+  +N +FD         R   D Y+  
Sbjct: 56  GIQPKDVIHE-KTFDQLWNAIYE--NHLKGNIMVAHNAKFDMNVL-----RATLDYYKIP 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W +     D    ++   A  PD +            KL  +A   G+E    H A  D 
Sbjct: 108 WPD----LDYACTVKLSRAVWPDLVN----------HKLNTMAAYIGVEF-KHHYALDDA 152

Query: 182 YATLAL 187
                +
Sbjct: 153 ETCAKV 158


>gi|187779049|ref|ZP_02995522.1| hypothetical protein CLOSPO_02644 [Clostridium sporogenes ATCC
           15579]
 gi|187772674|gb|EDU36476.1| hypothetical protein CLOSPO_02644 [Clostridium sporogenes ATCC
           15579]
          Length = 256

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 65/234 (27%), Gaps = 32/234 (13%)

Query: 4   HFVIYDYETFGRDVALD---------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           +++I+D E    +   +            Q   ++++  +  I++      KP      +
Sbjct: 2   NYIIFDLE---FNQGYNNHFEIKCPFEIIQIGAIKLNEGFTTIDTFNAL-VKPEIYSDLN 57

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P    +T +T     +      +  +   +F +  N      N             +RN 
Sbjct: 58  PFVKNLTNLTMDSLNKA-RPFRDVYKDFLEFLNKENKD---KNIFCIWGMTDMKELFRNI 113

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                 +        ++       Y               + + +L  +   N       
Sbjct: 114 VYYELDTKSIPKEYINV-----QAYTGKYLNYPKSVNIGLSNAVELFHITKNNDF----- 163

Query: 175 HDAKADVYATLALVWLIREKKPKL-----FEYLYDYRNKNQLRKLIDIQNMTPL 223
           H+A  D + T  +   I  +K K             R+KN   K+  +      
Sbjct: 164 HNAFNDAFYTTEVFKKIYSEKIKTKIYKPMNNTTTCRHKNTKTKIDTVNLFKQF 217


>gi|110636436|ref|YP_676643.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279117|gb|ABG57303.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 183

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 57/211 (27%), Gaps = 29/211 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET   +             V    + +++      KP  D+      V I GI
Sbjct: 2   NFTALDFET--ANTHKTSICAVGMAIV-EDGKVVKTISKLI-KPVPDF-YSYWNVQIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           TP           +  + + Q+        +  +N  FD              S   + +
Sbjct: 57  TPDMTADAPY-FIDVWQELKQYIDYS---TLVAHNAAFDVGA---------LRSILTTHE 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               + D             +              KL  +     +   N H+A++D   
Sbjct: 104 VSFPKTDYFCSCSVSRKVFKEIEN----------HKLSTVCRHIDVPL-NHHEAESDAIG 152

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
              ++    E+             K +L+  
Sbjct: 153 AAQIIIKAGERLGANSIEELMAMLKMKLKVF 183


>gi|116255725|ref|YP_771558.1| putative exonuclease [Rhizobium leguminosarum bv. viciae 3841]
 gi|115260373|emb|CAK03477.1| putative exonuclease [Rhizobium leguminosarum bv. viciae 3841]
          Length = 262

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 47/190 (24%), Gaps = 36/190 (18%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRV----DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           + D ET G +   D   +     V    D  W   +                PE + I  
Sbjct: 21  VVDLETAG-NGVND-VCEIGWQDVVLGHDGGWRVDDERGSLLV--NPGRPISPETMAIHH 76

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I   +          F + I      P   +I     R                ++  +W
Sbjct: 77  ILDAEVATAP-----FWKEIASSVLRPEGGVIALAAHRASFEQRYCTPRFTGGAAWICTW 131

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV---NAHDAKA 179
                                    WP      ++  L+ L L  G+ H     AH A  
Sbjct: 132 K-------------------CALRLWPEL-PRFSNQLLRYLRLPEGLVHAIGLPAHRAMP 171

Query: 180 DVYATLALVW 189
           D Y T   + 
Sbjct: 172 DAYVTAHHLR 181


>gi|302185096|ref|ZP_07261769.1| exonuclease [Pseudomonas syringae pv. syringae 642]
          Length = 180

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 23/192 (11%)

Query: 2   TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E      G  VA     +     V++   +++  E  F +PA   L     
Sbjct: 1   MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T I  Q ++           +  ++ S     I+G+                  +  
Sbjct: 60  RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARIVGW----------------ASWGD 102

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
           Y         R   LD   +         ++           L       G++     H 
Sbjct: 103 YDRQQLEEEWRHHHLDSALSGMPHINLKQRFAQARQLQKPMGLNSALQLAGMQFSGQQHR 162

Query: 177 AKADVYATLALV 188
           A  D   T  L+
Sbjct: 163 ALVDARNTARLL 174


>gi|302059908|ref|ZP_07251449.1| ribonuclease T [Pseudomonas syringae pv. tomato K40]
          Length = 225

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 9/163 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G + A D   + A V +   +R +   E T  F  +P      +  A+  TG
Sbjct: 33  VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 92

Query: 63  ITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           I        A+ +     +  R + +          ++  +N  FD  +      R    
Sbjct: 93  IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
              +   +      L  +       +          DG  +  
Sbjct: 153 RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGIDFDGREAHS 195


>gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 309

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  E +E       KP +     P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLI-KPKEMRFM-PINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P+    + +   +   +I  +F+     ++  +N  FD         RN    Y     
Sbjct: 57  RPRMVQDE-LEFDKIWGKIKHYFNNN---LVTAHNASFDISVL-----RNTLKLYNIK-- 105

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +D +  M+    F  +              +L  +    G +    HDA AD  A
Sbjct: 106 --MPSFDYICTMKLSKNFYSNIDN----------VRLNTVNNFLGYKF-KHHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
          Length = 302

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 29/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET   +   +         V       E    F  KP +     P  ++I GI 
Sbjct: 3   FVAIDFET--ANEKRNSACSIGLTVVKNNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+    +     E    I  +    +  ++  +N  FD    R                 
Sbjct: 58  PEDVENE-RTFNEIWEEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D  D+    + ++   +   +      + KL  ++ A G E  + H    D  A 
Sbjct: 97  --KTLDFYDIPYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARAC 153

Query: 185 LALV 188
             ++
Sbjct: 154 ANIL 157


>gi|71736737|ref|YP_274026.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557290|gb|AAZ36501.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320323478|gb|EFW79563.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329479|gb|EFW85471.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 180

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 23/192 (11%)

Query: 2   TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E      G  VA     +     V++   +++  E  F +PA   +     
Sbjct: 1   MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPVLTHFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T I  Q ++           +  ++ S     ++G+                  +  
Sbjct: 60  RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARVLGW----------------ASWGD 102

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
           Y         R+  LD   +         ++           L       G++     H 
Sbjct: 103 YDRQQLEEEWRYHRLDSALSSMPHVNLKQRFAQARQLQKPMGLNSALQLAGMQFAGQQHR 162

Query: 177 AKADVYATLALV 188
           A  D   T  L+
Sbjct: 163 ALVDARNTARLL 174


>gi|25011833|ref|NP_736228.1| DNA polymerase III subunit epsilon [Streptococcus agalactiae
           NEM316]
 gi|77414413|ref|ZP_00790566.1| exonuclease [Streptococcus agalactiae 515]
 gi|24413374|emb|CAD47453.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159528|gb|EAO70686.1| exonuclease [Streptococcus agalactiae 515]
          Length = 195

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 32/198 (16%)

Query: 5   FVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +D E  T G         Q + V+     ++I   + +                +TG
Sbjct: 7   YIAFDLEFNTVG---EHSHIIQVSAVKY-SNHQEIALFDTY---VHTKVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  +    +E      +  F    +T +IGYN  + D          N  D      
Sbjct: 60  ITARDIIGAPKIET-ILTDLQSFV--GDTPLIGYNGHKSDLPLLVE----NGLDLTSQYQ 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  DL D      +   +GI          + KL  +A   GI+   AH++  D  
Sbjct: 113 ------VDLYDEAFVRRSTDLNGI---------VNLKLTTVADFLGIK-GKAHNSLEDAR 156

Query: 183 ATLALVWLIREKKPKLFE 200
            T  +     +       
Sbjct: 157 MTARVYEKFLDLDENKIY 174


>gi|228982489|ref|ZP_04142748.1| Exonuclease [Bacillus thuringiensis Bt407]
 gi|228776672|gb|EEM24980.1| Exonuclease [Bacillus thuringiensis Bt407]
          Length = 186

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 36/155 (23%), Gaps = 9/155 (5%)

Query: 2   TNHFVIYDYETF----GRDVA--LDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPD 54
             H +I D E+     G +         +    V     +E +E  + F  KP       
Sbjct: 1   MKHLLIIDLESTCFKRGAEPRNFFSEIIEIGAVVLHTETFEIVEEYQTF-VKPVLFPTLS 59

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
              + +T I   +    G    +    I   ++  +     +       +      +   
Sbjct: 60  EYCLHLTTIRQDEV-DYGKSIKDAMNEIASLYNKYDCVFASWGFYDKKQFKQVCERFGVN 118

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWP 149
           Y          +               +      P
Sbjct: 119 YPFGHLHISLKHQHGTWTRQRPMGMERALKMHHLP 153


>gi|146327084|gb|AAI41731.1| LOC100049744 protein [Xenopus laevis]
          Length = 273

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 82  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFCTELTG 141

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I            ++   R+ ++ +                  S    +    D      
Sbjct: 142 IIQDMVDGQP-TLSQVLERVDEWMAKEG-----------LLDPSVKSIFVTCGDWDLKLM 189

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G   +  L V      +      +           L D+     ++H    H    D 
Sbjct: 190 LPGQCEYLGLQVADYFKQWINLKKAYSFAIGTWPKNGLLDMNKGMSLQHIGRPHSGIDDC 249

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 250 RNIANIMKTLAHR 262


>gi|115896443|ref|XP_790825.2| PREDICTED: similar to exonuclease domain containing 1
           [Strongylocentrotus purpuratus]
 gi|115964487|ref|XP_001192090.1| PREDICTED: similar to exonuclease domain containing 1
           [Strongylocentrotus purpuratus]
          Length = 613

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 53/197 (26%), Gaps = 13/197 (6%)

Query: 5   FVIYDYETFGRDVALD------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            ++ D+E+       D         +F  V ++    ++ES    +  P +  +      
Sbjct: 20  LIVIDFEST---CWKDKKNTSQEIIEFPAVLLNTTTGQLESEFQQYVMPDEHPVLSDFCT 76

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            +TGI+ ++    GV       +   +     +   + YN    D          + +D 
Sbjct: 77  ELTGISQEQVEN-GVPLFICLNKFTSWLKKIESEKNLAYNRSTDDTRKLCTFVTWSDWDL 135

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                     +          +  +    +   +           L           H  
Sbjct: 136 SVCLRYECQRKQLYKPSALNHWIDARAVYRNFYQRKPKGLS--GALQEVGIEFAGRQHSG 193

Query: 178 KADVYATLALVWLIREK 194
             D   T  LVW + + 
Sbjct: 194 LDDAKNTAILVWRMIQD 210


>gi|289428666|ref|ZP_06430349.1| exonuclease [Propionibacterium acnes J165]
 gi|289158064|gb|EFD06284.1| exonuclease [Propionibacterium acnes J165]
          Length = 223

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 35/132 (26%), Gaps = 19/132 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEA 57
            +  V  D E  G D+A D   + A +  D Q            KP   +L         
Sbjct: 20  KDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRN 79

Query: 58  VFIT---------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
           +  T         G+T  +A        +    I  +        +  N I  D  +   
Sbjct: 80  MHTTSGLLAELDKGLTMAQAQD------QVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAK 133

Query: 109 IFYRNFYDSYRW 120
              +     +  
Sbjct: 134 DMPKLESYVHYR 145


>gi|237797629|ref|ZP_04586090.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020479|gb|EGI00536.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 180

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 53/196 (27%), Gaps = 23/196 (11%)

Query: 2   TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E      G  VA     +     V++   +++  E  F +P    L     
Sbjct: 1   MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPVRRPLLTHFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T I+                +  ++ S     ++G+                  +  
Sbjct: 60  RQLTHISQSNIDSA-APLTTVWPQFERWLSHHRARVLGW----------------ASWGD 102

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHD 176
           Y         R   LD   +         ++           L       G++     H 
Sbjct: 103 YDRQQLEEEWRHHQLDSALSSMPHVNLKQRFAQARQLQKPLGLNSALQLAGMQFTGQQHR 162

Query: 177 AKADVYATLALVWLIR 192
           A  D   T  L+ LI 
Sbjct: 163 ALVDARNTARLLPLIM 178


>gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
          Length = 302

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 29/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET   +   +         V       E    F  KP +     P  ++I GI 
Sbjct: 3   FVAIDFET--ANEKRNSACSIGLTVVKNNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+    +     E    I  +    +  ++  +N  FD    R                 
Sbjct: 58  PEDVENE-RTFNEIWEEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D  D+    + ++   +   +      + KL  ++ A G E  + H    D  A 
Sbjct: 97  --KTLDFYDIPYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALGFEFSHHHAG-EDARAC 153

Query: 185 LALV 188
             ++
Sbjct: 154 ANIL 157


>gi|15221225|ref|NP_177579.1| exonuclease family protein [Arabidopsis thaliana]
 gi|12324816|gb|AAG52378.1|AC011765_30 putative exonuclease; 20146-18080 [Arabidopsis thaliana]
 gi|20466502|gb|AAM20568.1| putative exonuclease [Arabidopsis thaliana]
 gi|23198160|gb|AAN15607.1| putative exonuclease [Arabidopsis thaliana]
 gi|332197464|gb|AEE35585.1| polynucleotidyl transferase, ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 506

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 59/192 (30%), Gaps = 29/192 (15%)

Query: 5   FVIYDYETFGRDVALD----RPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVF 59
              +D ET               +F  + V  R+ E++ S      +P D  L       
Sbjct: 13  IAFFDLET--AVPTKSGEPFAILEFGAILVCPRRLEELYSYSTL-VRPTDLSLISTLTKR 69

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            +GIT    L      +E + +++           G+N IRFD    R  F         
Sbjct: 70  RSGITRDGVLSA-HTFSEIADKVYDIL--HGRIWAGHNIIRFDCVRIREAFAEIGLSPPE 126

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                  +  D L ++   +               A   K+  LA   G+    AH +  
Sbjct: 127 -----PKATIDSLSLLSQKF------------GKRAGDMKMASLATYFGLG-DQAHRSLD 168

Query: 180 DVYATLALVWLI 191
           DV   L +V   
Sbjct: 169 DVRMNLEVVKYC 180


>gi|297571046|ref|YP_003696820.1| exonuclease RNase T and DNA polymerase III [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931393|gb|ADH92201.1| Exonuclease RNase T and DNA polymerase III [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 218

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 19/114 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------ 58
            V  D E  G D+  D   + A V  D +   +++      KP ++   + ++       
Sbjct: 12  IVWIDCEMTGLDLEKDALVEIAIVVTDAELNPLDNGLDIVIKPPEEAAANMDSFVRNMHT 71

Query: 59  ---FI----TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
               I    TG T + A +      +    I +F        +G N++  D  +
Sbjct: 72  TTGLIKRWETGTTIEDAEK------QCIDYIKRFVPEIRKAPLGGNSVGTDRTF 119


>gi|170782736|ref|YP_001711070.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157306|emb|CAQ02493.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus]
          Length = 216

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 27/176 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M   F   D+ET   + +         V+V R    +++       PA           I
Sbjct: 8   MPLDFTAIDFET--ANNSSASACSVGLVKV-RDGVVVDTASWLIRPPAGHDSFSVWNTRI 64

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI              ++ ++ +  +      +  +N RFD    +         +  +
Sbjct: 65  HGIVEDDVADADG----WADQLPRLMAFAGDDHLVAHNARFDMGVIQGACKATALIAPPY 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           S+         L V R  Y                 S++L   A A G E  + H+
Sbjct: 121 SY------LCSLQVARRTYTLD--------------SYRLPVAARAAGFEDFSHHE 156


>gi|118602537|ref|YP_903752.1| ribonuclease T [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567476|gb|ABL02281.1| RNAse T [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 195

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 59/205 (28%), Gaps = 37/205 (18%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--------A 57
           V+ D ET G +   D   +   + +      I+     + K +  +  +P         A
Sbjct: 13  VVIDTETGGFNEKTDAMLEICAIVIG-----IDKMNNLYPKGSQHFHIEPFKGGMLESSA 67

Query: 58  VFITGITPQ----KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFY 111
           +   GI        A+++     +   +++      +    I+  +N  FD  +      
Sbjct: 68  LKFNGIDVDNPFRMAVKEIDAIKQIYTKVYAELKQESCTRAILVGHNAFFDLGFLHAATD 127

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R           +   ++  LD +        + +   +                   + 
Sbjct: 128 RCKL-------KSPFHQFSTLDTVSLSALHYGETVLAKAMRKANI-----------EWDD 169

Query: 172 VNAHDAKADVYATLALVWLIREKKP 196
             AH A  D   T  L   I   KP
Sbjct: 170 SCAHSALYDTQKTAELFCKIFNTKP 194


>gi|27365643|ref|NP_761171.1| hypothetical protein VV1_2322 [Vibrio vulnificus CMCP6]
 gi|37680205|ref|NP_934814.1| hypothetical protein VV2021 [Vibrio vulnificus YJ016]
 gi|320156044|ref|YP_004188423.1| hypothetical protein VVM_02370 [Vibrio vulnificus MO6-24/O]
 gi|27361791|gb|AAO10698.1| hypothetical protein VV1_2322 [Vibrio vulnificus CMCP6]
 gi|37198952|dbj|BAC94785.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
 gi|319931356|gb|ADV86220.1| hypothetical protein VVMO6_01198 [Vibrio vulnificus MO6-24/O]
          Length = 176

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 20/148 (13%)

Query: 3   NHFVIYDYET----------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           N  V +D E            G         +     +D    +I     ++ KP  D +
Sbjct: 4   NRIVCFDLEMCCWNEDGVGRTG------EIIEIGLAEIDLLKGEIVKRAQYYVKPEHDEV 57

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +TGITP+K  + G   AE  + + + F   N     +     DD         
Sbjct: 58  -SLFCAELTGITPRKIEKQGRPLAEVIKSMIKNFGGSNKIYASW---GRDDRILMQECQE 113

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
              D+    + N  + + +   ++    
Sbjct: 114 KGIDAPFNEFINIATLYRIQHRLKDKRI 141


>gi|325926745|ref|ZP_08188053.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Xanthomonas perforans 91-118]
 gi|325542826|gb|EGD14281.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Xanthomonas perforans 91-118]
          Length = 183

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 32/200 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-FFCKPAD-DYLPDPEAV 58
           ++  FV  D E  G             V VD         E  F+ +    D   DPEA+
Sbjct: 3   LSEIFVSVDIEASGPIPGEFSLLSIGAVLVD-------RPETSFYLELKPEDTRHDPEAL 55

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPN-----TCIIGYNNIRFDDYYSRNIFYRN 113
            +TG   ++  R+GV      R+  Q+ S  +        +G N            F   
Sbjct: 56  AVTGFEIEELARNGVEPGAAMRKFGQWLSEFSAPSQRPVFVGLNAAFD------WSFVNY 109

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
           ++  Y      G +  D+       +     G +W    D   S +++ L      +   
Sbjct: 110 YFHKYCGENPFGFTALDI-----KAFFMGVVGSRW----DQTKSSQMEKL---LRPKLTG 157

Query: 174 AHDAKADVYATLALVWLIRE 193
            H+A  D      L   +++
Sbjct: 158 THNALEDARYQAELFRKLQK 177


>gi|254442129|ref|ZP_05055605.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235]
 gi|198256437|gb|EDY80745.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235]
          Length = 193

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 19/121 (15%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+   +   D E  G D A DR  + A +  ++Q E +   E    +P +      +   
Sbjct: 1   MSKRRYCWIDLEMTGLDPATDRIVEAAVIITNKQLEPVFEWESAVRQPQEVLEGMNDWCK 60

Query: 60  IT------------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
                         GIT ++           +    ++F   N C+I  N+I  D  +  
Sbjct: 61  HHHAESGLLDRIQDGITEEELDDK------LAEITLKYFKKNNPCVIAGNSIAQDRKFID 114

Query: 108 N 108
            
Sbjct: 115 R 115


>gi|115396528|ref|XP_001213903.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193472|gb|EAU35172.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 186

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKP 47
          ++  V  D E  G D   D+  Q      D Q   ++    EV   +P
Sbjct: 7  SDPLVWIDCEMTGLDPETDQILQICCFVTDAQMNLLDETGFEVIIHQP 54


>gi|28377661|ref|NP_784553.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum WCFS1]
 gi|254555842|ref|YP_003062259.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum JDM1]
 gi|28270494|emb|CAD63396.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum WCFS1]
 gi|254044769|gb|ACT61562.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum JDM1]
          Length = 173

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 28/180 (15%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D+ET   +   D     A   V    +  +           +       V I GI     
Sbjct: 2   DFET--ANAKRDSACSLALTVVRNN-QISDEFYTL---IKPESDFFWRNVQIHGIHEADV 55

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
                   +  + I  FF      ++  +N  FD    RN                    
Sbjct: 56  ADAPK-FPDVWQHIEPFFQRD--RLVIAHNAPFDIGVLRNTLAHYGI---------SAPE 103

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
           +  +D ++    F P+            + KL  +  A  I+  + H+A  D  A   ++
Sbjct: 104 YLSMDTVKTSQRFYPEL----------PNHKLDTVCQALDIDLQHHHNALDDSLACANIL 153


>gi|315652211|ref|ZP_07905206.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485517|gb|EFU75904.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 339

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 70/241 (29%), Gaps = 28/241 (11%)

Query: 2   TNHFVIYDYETF----GR-DVALD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
            +++++ D E      GR     D      +   ++++ + E ++       KP      
Sbjct: 9   MDNYIVLDLEWNQSPNGREHSNKDLPFEIIEIGAIKLNSRLETVDEFH-RVIKPTVYKKI 67

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPN---TCIIGYNNIRFDDYYSRNIF 110
             +   +  I   +  + GV   +      +F  + N     I+            RN+ 
Sbjct: 68  HFKVHEVVQIGIWELKKKGVPFVDAINDFFEFCEMDNKQKKKILCTWGNLDLVELQRNMK 127

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
           + N  + + + +                Y           ++       L+       IE
Sbjct: 128 FYNVENKFEYPF---------------FYYDLQKLFNIKFQNAQQERIPLERAVNMLNIE 172

Query: 171 HVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
                H A  D   T+ ++  +       +  L  YR      + I +        VS +
Sbjct: 173 VERPFHHAFDDACYTVKVMQRMDFFSVSEYYSLDYYRVPRNADEEIYLHFSGYSKFVSTL 232

Query: 230 F 230
           F
Sbjct: 233 F 233


>gi|282854757|ref|ZP_06264092.1| exonuclease [Propionibacterium acnes J139]
 gi|282582339|gb|EFB87721.1| exonuclease [Propionibacterium acnes J139]
          Length = 205

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 17/48 (35%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
          M +  V  D E  G D+A D   + A +  D Q            KP 
Sbjct: 1  MKDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPE 48


>gi|269467908|gb|EEZ79647.1| DNA polymerase III, epsilon subunit [uncultured SUP05 cluster
           bacterium]
          Length = 196

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 27/200 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   + +    + +   + +  F  +P      DP A+   G
Sbjct: 13  VVVDIETGGFNDKTDAMLEICAIIIGIDDKGVYYPKDSRHFHIEPFKGANLDPSALKFNG 72

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I      R  V E E    I +              I+  +N  FD  +      R+   
Sbjct: 73  IDVNNPFRMAVSEKEALGEIFKTARAEMKEEECTRAILVGHNAFFDLGFLYAASNRSKL- 131

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N   ++  +D +     +  + +   +                   +   AH 
Sbjct: 132 ------KNPFHQFSTIDTVSLSALYYGETVLAKAMRVANI-----------EWDDAKAHS 174

Query: 177 AKADVYATLALVWLIREKKP 196
           A  D   T  L   I   + 
Sbjct: 175 ALYDTKKTAELFCKIFNAQD 194


>gi|296875763|ref|ZP_06899826.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433228|gb|EFH19012.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 15912]
          Length = 197

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +      +  Q + VR     ++++  + +      D         +
Sbjct: 5   EDYIAFDLE---FNQYEGAYQIIQVSAVRF-TDGKEVDHYDSY---VYTDKPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      +E +       F       +IGYN  + D          +  D Y  
Sbjct: 58  TGITQDKIQNAPQLE-QVLSEFKAFVGDRP--LIGYNAKKSDLPILL-ENGLDLEDQYA- 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+ D               PS   G  + +L  +A   G+    +HD+  D
Sbjct: 113 --------VDVFDEAFERR---------PSDLHGIKNLQLHTVAEFLGVA-GKSHDSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTALVYEQFLEFDQ 170


>gi|312883579|ref|ZP_07743304.1| hypothetical protein VIBC2010_12209 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368802|gb|EFP96329.1| hypothetical protein VIBC2010_12209 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 176

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 11/146 (7%)

Query: 1   MTNHFVI-YDYET-----FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M ++ V+ +D E       G         +     +D    +I     ++ KP  D +  
Sbjct: 1   MNHNRVVCFDLEMCCWNENGIG-RTGEIIEIGLAEIDLTSGEIVKRAQYYVKPEADEV-S 58

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
                +TGI+P+K  + G    E    + + F   N     +     DD   +N   +  
Sbjct: 59  QFCTELTGISPRKIEKQGRSLGEVLNSMKKNFGGSNKIYASW---GRDDVILQNECAKKG 115

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYA 140
            +     + N  + + + + ++    
Sbjct: 116 LEMPFREFINLATLFRIQNRLKDKRV 141


>gi|308179821|ref|YP_003923949.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045312|gb|ADN97855.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 173

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 50/180 (27%), Gaps = 28/180 (15%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D+ET   +   D     A   V    +  +           +       V I GI     
Sbjct: 2   DFET--ANAKRDSACSLALTVVRNN-QISDEFYTL---IKPESDFFWRNVQIHGIHEADV 55

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
                   +  + I  FF      ++  +N  FD    RN        +  +        
Sbjct: 56  ADAPK-FPDVWQHIEPFFQRD--RLVIAHNAPFDIGVLRNTLAHYGISAPEY------LS 106

Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            D ++  +  Y                 + KL  +  A  I+  + H+A  D  A   ++
Sbjct: 107 MDTVNTSQRFY-------------PELPNHKLDTVCQALDIDLQHHHNALDDSLACANIL 153


>gi|301063709|ref|ZP_07204220.1| exonuclease [delta proteobacterium NaphS2]
 gi|300442182|gb|EFK06436.1| exonuclease [delta proteobacterium NaphS2]
          Length = 177

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 47/177 (26%), Gaps = 21/177 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYL 52
           M  + V  D E  G D       + A +  D     +           E          L
Sbjct: 1   MIGNLVWIDLEMTGLDPEHHVIVEIASIVTDDHLSVLAEGPDIVIHQPESTLSAMEPWSL 60

Query: 53  PDPEAV-FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
              +A   +  I           E E    I QF    ++ + G +  +   +  +++  
Sbjct: 61  EHHQASGLLDRIKTS-VYSTEQAEEETLSFIRQFCQRGHSPLCGNSICQDRRFLVKHMPT 119

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
              +  YR            +DV              P  +   T   L D+  + G
Sbjct: 120 LEAFFHYRN-----------IDVSSVKELVKRWYPNLPHFEKQKTHLALSDIKESIG 165


>gi|146305663|ref|YP_001186128.1| oligoribonuclease [Pseudomonas mendocina ymp]
 gi|166216580|sp|A4XPY0|ORN_PSEMY RecName: Full=Oligoribonuclease
 gi|145573864|gb|ABP83396.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           ymp]
          Length = 180

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+ +  D E  G +   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   PNNLIWIDLEMTGLEPERDVIIEMATIVTDSELNVLAEGPVIAIHQSDETLAGMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  A    +   F           I  N+I  D  +         
Sbjct: 64  THGQSGLTQRVRESRIDTATAEAQTIAFLEQWVPKGKSPICGNSIGQDRRFLYKYMPALE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 AYFHYR 129


>gi|319653481|ref|ZP_08007580.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
 gi|317394680|gb|EFV75419.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
          Length = 202

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 35/192 (18%)

Query: 8   YDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPE-----AVFI 60
            D ET G     D   + A           +I   +       +      +     A  +
Sbjct: 11  LDVETTGLGPNSDEIIELALKLFSYRADTGEILDIKDKAAFLREPISKSAKNNYSRAFRV 70

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +     G    +   +I ++F   ++  +  +N  FD  +               
Sbjct: 71  HGIPYEAV--SGKCFDDI--KIKKYFFHADS--VFAHNASFDRSF------------LYR 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            +    +       MR++          P ++ G T  KL  L  ++ I     H A  D
Sbjct: 113 MYPEDINELKWYCTMRSV----------PWKEYGFTDSKLLTLLQSHQIAESQTHRAMDD 162

Query: 181 VYATLALVWLIR 192
           +   L L+    
Sbjct: 163 ITYLLELLKKTN 174


>gi|289679622|ref|ZP_06500512.1| exonuclease [Pseudomonas syringae pv. syringae FF5]
 gi|330897689|gb|EGH29108.1| exonuclease [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330981951|gb|EGH80054.1| exonuclease [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 180

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 23/192 (11%)

Query: 2   TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E      G  VA     +     V++   +++  E  F +PA   L     
Sbjct: 1   MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T I  Q ++           +  ++ S     I+G+                  +  
Sbjct: 60  RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARIVGW----------------ASWGD 102

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
           Y         R   LD   +         ++           L       G++     H 
Sbjct: 103 YDRQQLEEEWRHHHLDSALSSMPHVNLKQRFAQARHLQKPMGLNSALQLAGMQFSGQQHR 162

Query: 177 AKADVYATLALV 188
           A  D   T  L+
Sbjct: 163 ALVDARNTARLL 174


>gi|312898045|ref|ZP_07757451.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620870|gb|EFQ04424.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           micronuciformis F0359]
          Length = 184

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 58/213 (27%), Gaps = 29/213 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +   D     A V +    + +        KP      D + + I 
Sbjct: 1   MLEFTAIDFET--ANRYADSACSLAAVSI--AGQSVMHEGYTLIKP-PFNRFDEDNIRIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITPQ               I +  +     I+  +   FD    R++  R        S
Sbjct: 56  GITPQMVSAKP-TFDALWPDIRKRLNKR---ILIAHYAVFDTRVLRSLIKRYNLPGLNAS 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +            +       PD            + KL  +A   G      H A  D 
Sbjct: 112 YA---------CTVEISRKVWPDL----------PNHKLDTVAGHLGF-TFRHHQALDDA 151

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
            A   +V    E+           R   +L+  
Sbjct: 152 RACARIVCAAAERTGASSVEDLLTRTGLKLKHF 184


>gi|290968085|ref|ZP_06559634.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781991|gb|EFD94570.1| DNA polymerase III subunit epsilon domain protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 184

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 54/187 (28%), Gaps = 29/187 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +   +     A V++       E   +           +P  + I 
Sbjct: 1   MLEFTAIDFET--ANKYANSACSLAAVQMRGTQCIQEQYSLIK---PPFMTFEPTNIAIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP++  ++     +               I+  +   FD    R+       D    +
Sbjct: 56  GITPEQVRQE-KNFLQLWPLFKPCMEKK---ILAAHYAVFDTRVLRSTLKTYHLDVPAAT 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +         +  ++           WP       + KL  +A   G    + H A  D 
Sbjct: 112 Y---------VCTVQISRKV------WP----QLPNHKLDTVANMLGYSF-HHHHALEDA 151

Query: 182 YATLALV 188
            A   ++
Sbjct: 152 GACAYIL 158


>gi|293344344|ref|XP_002725706.1| PREDICTED: exonuclease domain containing 1-like [Rattus norvegicus]
          Length = 687

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+  +     +F  V ++    +IES    + +P +  +       +
Sbjct: 37  LIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+            ++           F      
Sbjct: 97  TGIKQVQV-DEGVPLKICLSQFGKWIHKLQQQKKISFATGDSEPSTPEVKPCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRATYKLFYNRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|119627448|gb|EAX07043.1| prion protein interacting protein, isoform CRA_b [Homo sapiens]
          Length = 206

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 15  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 74

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  +    +    D      
Sbjct: 75  IIQAMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVM 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADV 181
             G  ++  L V      +      +           L D+     ++H    H    D 
Sbjct: 123 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 182

Query: 182 YATLALVWLIREK 194
                ++  +  +
Sbjct: 183 KNIANIMKTLAYR 195


>gi|27263219|gb|AAN88025.1| putative oligoribonuclease [Diachasmimorpha longicaudata
           entomopoxvirus]
          Length = 206

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 8/122 (6%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59
           M N+    D E  G D   D   +      +   E            +DD L   +    
Sbjct: 27  MANNIAWLDLEMTGLDPETDNILEIGCFITNDALEITSPIFHMIIHNSDDILKSMDKWCK 86

Query: 60  ITGITP---QKALRDGVVEAEFSRRIHQFF----SVPNTCIIGYNNIRFDDYYSRNIFYR 112
            T        + +          +++ QFF    S     I+  N+I  D  +      R
Sbjct: 87  KTHTKNGLITEVMNSKTSLEVAEKKLIQFFKAHASSDKAIILAGNSIYIDKGFLCEHMPR 146

Query: 113 NF 114
            +
Sbjct: 147 LY 148


>gi|322385196|ref|ZP_08058843.1| DNA polymerase III [Streptococcus cristatus ATCC 51100]
 gi|321270820|gb|EFX53733.1| DNA polymerase III [Streptococcus cristatus ATCC 51100]
          Length = 814

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 39/206 (18%)

Query: 4   HFVIYDYETFGRDVALDRPAQFA-----GVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            + + D E              A     G+ +       ++ E            D    
Sbjct: 7   KYAVIDLEATSASSN-------AKIIQIGIVIIENGVICQTYET---DVNPHEDLDEHIK 56

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TG+  Q+  +     ++ +R +++        I   +N++FD        +   +D  
Sbjct: 57  QLTGLDDQRLRQAP-DFSQVAREVYELIED---AIFVAHNVKFDANLLAEALFWEGFDLL 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                    R D +++ +  Y                  + L +L     I   NAH A 
Sbjct: 113 T-------PRVDTVELAQVFYPTFD-------------KYALGNLCELLEIPLENAHTAL 152

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
           AD  AT  L   I++K  +L + L +
Sbjct: 153 ADAQATAQLFLKIQKKMARLPKALLE 178


>gi|91093385|ref|XP_971552.1| PREDICTED: similar to AGAP012804-PA [Tribolium castaneum]
 gi|270015360|gb|EFA11808.1| hypothetical protein TcasGA2_TC008587 [Tribolium castaneum]
          Length = 211

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 21/132 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
           N  V  D E  G DVA D+  + A +  D     I           +    K  +     
Sbjct: 34  NRVVWVDMEMTGLDVATDKIMEVACIITDGDLNIIAEGPDLIIHHPQNILDKMNEWCKTH 93

Query: 55  P------EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                  EA   + I+ ++A             + ++ +      +  N++  D  + R 
Sbjct: 94  HSKSGLSEACLKSKISVEEAQDK------LMDFVAEYVTE-KVSPLAGNSVYMDRLFLRK 146

Query: 109 IFYRNFYDSYRW 120
              R     +  
Sbjct: 147 YMPRLHEYLHYR 158


>gi|72046790|ref|XP_780396.1| PREDICTED: similar to CGI-114 protein [Strongylocentrotus
           purpuratus]
 gi|115956149|ref|XP_001188154.1| PREDICTED: similar to CGI-114 protein [Strongylocentrotus
           purpuratus]
          Length = 196

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 21/134 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYL 52
           + +  V  D E  G D+      + A +  D++   +           +    K  D  +
Sbjct: 19  LKSRLVWVDLEMTGLDLDTCHIIEMACLITDQELNVVAEGPNIIIHQPDEILDKMNDWCV 78

Query: 53  PDP------EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
                    +AV  + IT Q+A      E E    + ++ + P  C +  N+I  D  + 
Sbjct: 79  QHHTASGLVDAVKASKITLQQA------EYEMLSFVREY-TYPKLCPLAGNSIHVDKTFL 131

Query: 107 RNIFYRNFYDSYRW 120
                +     +  
Sbjct: 132 VKYMPQFMDHLHYR 145


>gi|190574880|ref|YP_001972725.1| oligoribonuclease [Stenotrophomonas maltophilia K279a]
 gi|190012802|emb|CAQ46431.1| putative oligoribonuclease [Stenotrophomonas maltophilia K279a]
          Length = 190

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 12/37 (32%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
             +  D E  G D   D   + A V  D Q   +  
Sbjct: 9  ERLIWIDLEMTGLDTDNDSIIEIATVVTDAQLNVLAE 45


>gi|222629868|gb|EEE62000.1| hypothetical protein OsJ_16781 [Oryza sativa Japonica Group]
          Length = 252

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 53/189 (28%), Gaps = 28/189 (14%)

Query: 6   VIYDYETFGRDVALDR--PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V +D ET        +    +F  + V  R+  +++S            +    A  +  
Sbjct: 7   VFFDVETTAASADEGQRSVLEFGAIVVCPRRLVEVDSYHTVIRPGDMSAVSKRFAAMV-- 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
                         + + RI            G+N  RFD         R  + +   + 
Sbjct: 65  --DVDVASAP-SFDQVAERIFGVLD--GRVWAGHNIQRFD-----CHRIREAFAAIGRAA 114

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
               +  D L+V+                   A   K+  LA   GI    +H +  D  
Sbjct: 115 PEPVAIVDSLNVLA------------HDFGRRAGDLKMATLASYFGIG-KQSHRSLDDAR 161

Query: 183 ATLALVWLI 191
             L ++   
Sbjct: 162 MNLEVLKRC 170


>gi|118594944|ref|ZP_01552291.1| oligoribonuclease [Methylophilales bacterium HTCC2181]
 gi|118440722|gb|EAV47349.1| oligoribonuclease [Methylophilales bacterium HTCC2181]
          Length = 182

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFI 60
           N+ +  D E  G D   D+  + A V  D     I  + VF     D  L   +A     
Sbjct: 7   NNLIWLDMEMSGLDPENDKVLEIAVVITDPFLTIIAESPVFVIHQEDAVLARMDAWNQGT 66

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   +K       E   +R++ +F +     N   +  N+I  D  +          
Sbjct: 67  HGKSGLIEKVKNSKHNEEGVTRQLLEFMAKYVGKNKSPMCGNSICQDRRFMAKHMPELES 126

Query: 116 DSYRW 120
             +  
Sbjct: 127 FFHYR 131


>gi|12855883|dbj|BAB30489.1| unnamed protein product [Mus musculus]
          Length = 274

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+  +     +F  V ++    +IES    + +P +  +       +
Sbjct: 37  LIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + IH+            ++           F      
Sbjct: 97  TGIKQVQV-DEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECRRKQLLKPVFLNSWI--DLRATYRLFYKRKPKGLSGALQEVGIEFSGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|312870293|ref|ZP_07730421.1| exonuclease [Lactobacillus oris PB013-T2-3]
 gi|311094177|gb|EFQ52493.1| exonuclease [Lactobacillus oris PB013-T2-3]
          Length = 178

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET             A   V    +  +            +  +   V I GI
Sbjct: 2   NFIAMDFET--ASAKRYSACSLALTIVRDN-QIADEFYTLINPQTPFFWRN---VQIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +          E    I  F       ++  +N RFD+   ++       +       
Sbjct: 56  HERDVADAP-TFPEVWEHIKGF--YTPEKLVIAHNNRFDNGVLKSTLEHYGIEPPA---- 108

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                +  LD + +                G +++KL  +  A  I+  + H+A  D  A
Sbjct: 109 -----YQTLDTVVSSRRLL----------PGLSNYKLNTVCDALNIDLHHHHNALDDAQA 153

Query: 184 TLALVWLIREK 194
              ++    + 
Sbjct: 154 CANILLYQGQH 164


>gi|254498741|ref|ZP_05111457.1| oligoribonuclease [Legionella drancourtii LLAP12]
 gi|254352069|gb|EET10888.1| oligoribonuclease [Legionella drancourtii LLAP12]
          Length = 173

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFITGIT--PQ 66
           E  G D   +R  + A V  D     I    VF    A ++L   +A      G +   +
Sbjct: 2   EMTGLDPEENRIIEIATVVTDPHLNIIGEGPVFAIAQAKEHLDAMDAWNTKQHGQSGLVK 61

Query: 67  KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRN 108
           + L   V EA+  ++   F           +  N++  D  +   
Sbjct: 62  RVLDSKVSEADAEQQTINFLKYYVDKGKSPMCGNSVCQDRRFLYK 106


>gi|307709187|ref|ZP_07645646.1| DNA polymerase III epsilon subunit [Streptococcus mitis SK564]
 gi|307620133|gb|EFN99250.1| DNA polymerase III epsilon subunit [Streptococcus mitis SK564]
          Length = 196

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R  ++I++ + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGQEIDAYDSY---VHTSVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +  +   +F    +  ++GYN  + D                  
Sbjct: 58  TGITAETLKDAPPVE-KVIKDFQEFV--GSLPMVGYNAAKSDLPILAEHGLDY------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYEFFLESDQ 170


>gi|332185524|ref|ZP_08387272.1| exonuclease family protein [Sphingomonas sp. S17]
 gi|332014502|gb|EGI56559.1| exonuclease family protein [Sphingomonas sp. S17]
          Length = 191

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 55/214 (25%), Gaps = 35/214 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +  FV+ D ET           Q   V       ++ + E                + I 
Sbjct: 3   SPDFVVIDVET--ACSRTSSICQIGIVGY-AAGVEVLAYETL---VDPCDDFSSFNIGIH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT    L        F+    +        +   ++  FD         R+        
Sbjct: 57  GITADHVLGKPT----FAALHPELAMHLGGRVTVAHSG-FDKGALGRACERDALPPIAAR 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W       D + + R  +                 + KL  LA    +EH   HDA +D 
Sbjct: 112 W------LDSVTIARRAW-------------PELPNHKLNTLAAFLELEH-RHHDALSDA 151

Query: 182 ----YATLALVWLIREKKPKLFEYLYDYRNKNQL 211
                  L  +          F      R + ++
Sbjct: 152 RAAGQVVLRAMSATGLTLTDWFTPPLSARARRKV 185


>gi|325297417|ref|YP_004257334.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324316970|gb|ADY34861.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 183

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 53/204 (25%), Gaps = 28/204 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET           + AG+ V R  +  E+         +        + I GI
Sbjct: 5   NFIAIDFET--ATRKRASICE-AGICVVRNGKVAETRSWLIR--PEGNYYSYWNMQIHGI 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P           E   +I ++       ++  +N  FD    R+            ++ 
Sbjct: 60  RPSDTENAPE-FPEIWTKITEYLGECP--VLVAHNAIFDIGCIRHSLQFYHIKKPDITY- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                      +RA                     KL  L     I +   H A  D   
Sbjct: 116 --------YCSLRAARKLYNFDCN-----------KLDYLCDQFEIPYRLHHRAGDDAEM 156

Query: 184 TLALVWLIREKKPKLFEYLYDYRN 207
              L         K      D+ N
Sbjct: 157 CARLFLREIRDAAKCDHENMDFCN 180


>gi|289168125|ref|YP_003446394.1| DNA polymerase III, epsilon chain [Streptococcus mitis B6]
 gi|288907692|emb|CBJ22529.1| DNA polymerase III, epsilon chain [Streptococcus mitis B6]
          Length = 196

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R  ++I++ + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGQEIDAYDSY---VHTSVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +  +   +F       ++GYN  + D                  
Sbjct: 58  TGITAETLKDAPPVE-KVIKDFQEFVGSLP--MVGYNAAKSDLPILAEHGLDY------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 108 ---STQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYESFLESDQ 170


>gi|229591814|ref|YP_002873933.1| hypothetical protein PFLU4398 [Pseudomonas fluorescens SBW25]
 gi|229363680|emb|CAY51043.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 180

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 25/193 (12%)

Query: 2   TNHFVIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H++I D E T   G     +    +     V+RQ  +++  +  F +P    L  P  
Sbjct: 1   MPHWLIIDLEATTDEGGWPVTEMEVIEIGASLVNRQGRELDHFQ-RFVRPLRRPLLTPFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYD 116
             +T IT            E      ++    +  + G+ +   +D       + R+   
Sbjct: 60  RQLTHITQANMDGA-APITEVWPLFERWLGQHHARLEGWASWGDYDRAQLELEWQRHG-- 116

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAH 175
                          L    A         ++           L       G++ H   H
Sbjct: 117 ---------------LASALAHTPHVNLKQRFAKARRLDKPLGLNGALQLAGMQFHGQQH 161

Query: 176 DAKADVYATLALV 188
            A  D   T  L+
Sbjct: 162 RALEDARNTARLL 174


>gi|323144276|ref|ZP_08078898.1| exonuclease [Succinatimonas hippei YIT 12066]
 gi|322415946|gb|EFY06658.1| exonuclease [Succinatimonas hippei YIT 12066]
          Length = 232

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D+ET G D   D       V  D    +I+ +  F             +  I  ITP+ 
Sbjct: 50  LDFETTGLDFNEDLILSMGWV--DINRGEIDFSSGFHTFINIADKVKSHSAVINHITPEM 107

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGY 96
            L  GV   E   ++ +        II +
Sbjct: 108 LL-HGVSLNEALNQLIEHIK--GRIIICH 133


>gi|238486688|ref|XP_002374582.1| RNA exonuclease Rex2, putative [Aspergillus flavus NRRL3357]
 gi|317144078|ref|XP_003189562.1| RNA exonuclease Rex2 [Aspergillus oryzae RIB40]
 gi|220699461|gb|EED55800.1| RNA exonuclease Rex2, putative [Aspergillus flavus NRRL3357]
          Length = 191

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 15/130 (11%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST---------EVFFCKPADDYLP 53
           +  V  D E  G D   D+  Q      D   + ++           +      +   + 
Sbjct: 8   DPLVWIDCEMTGLDSEKDQIIQVCCFVTDANLQLLDPHGFETVIHASKTTMDNMSQWCID 67

Query: 54  DPEAVFITGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
                  TG+T          E   +E    I ++   P T ++  N++  D  +     
Sbjct: 68  THGR---TGLTAAVLASTVTPESAASELLAYIQRYVPQPRTALLAGNSVHADKAFLSRGP 124

Query: 111 YRNFYDSYRW 120
           Y    +   +
Sbjct: 125 YAKVLEWLHY 134


>gi|149280749|ref|ZP_01886857.1| hypothetical protein PBAL39_05951 [Pedobacter sp. BAL39]
 gi|149228496|gb|EDM33907.1| hypothetical protein PBAL39_05951 [Pedobacter sp. BAL39]
          Length = 181

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 6/120 (5%)

Query: 3   NHFVIYDYETF---GRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           +  +I D E     G +     +   +     ++ Q  +I        KP    +     
Sbjct: 6   DEILIVDIEATCWEGSNPDGMENDIIEIGIALLNVQTGEISENRGILVKPERSEV-GEFC 64

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T ITPQ  + DGV   E    + + +S  N     +       +  +   Y   Y  
Sbjct: 65  TKLTTITPQMIIDDGVTFREACSILKKEYSSQNRAWASFGAYDLKQFQRQCAAYNIGYPF 124


>gi|238019461|ref|ZP_04599887.1| hypothetical protein VEIDISOL_01330 [Veillonella dispar ATCC 17748]
 gi|237864160|gb|EEP65450.1| hypothetical protein VEIDISOL_01330 [Veillonella dispar ATCC 17748]
          Length = 327

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 36/220 (16%)

Query: 4   HFVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           +++++D E     +                  Q   V+++ + + ++   +F       Y
Sbjct: 2   NYIVFDLEWNQPYSNDISFMKRTKMPLTGEIIQIGAVKLNEKMDIVDHFTMF---IKPQY 58

Query: 52  LP--DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           LP        +TGIT ++    GV      +      +      +  +    D    R  
Sbjct: 59  LPRMHKHVRELTGITSREL-DHGVPFKTAMQYFQ---NWCGDEYMLLSWGSDDILILREN 114

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
              +   +  +                          ++ +    + +  ++DL      
Sbjct: 115 LMLHRMKALSYDQ-------------WVDAQMIYSYQRYGTSQQYSVAHAMEDL--NIST 159

Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
           EH++AH+A  D   T  +   +   +  L        + N
Sbjct: 160 EHLSAHNALHDAVFTAHICQKLDIPQGILHYDQIRKESSN 199


>gi|227495351|ref|ZP_03925667.1| exoribonuclease II [Actinomyces coleocanis DSM 15436]
 gi|226831221|gb|EEH63604.1| exoribonuclease II [Actinomyces coleocanis DSM 15436]
          Length = 207

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 44/140 (31%), Gaps = 28/140 (20%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           MT ++     V  D E  G DV  D   + A V  D +   ++       K      P  
Sbjct: 1   MTINYPARPLVWIDCEMTGLDVEKDALVEVAVVVTDEELNLLDPGIDLLIK------PSA 54

Query: 56  EAVF-----------ITGITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIR 100
           EA+             +G+     L +G+  AE        + +F       ++  N+I 
Sbjct: 55  EALANMNDFVRNMHTTSGLLDD--LENGISLAEAEERVLAYVKKFVPQAKRGLLAGNSIG 112

Query: 101 FDDYYSRNIFYRNFYDSYRW 120
            D  +      R     +  
Sbjct: 113 TDKMFLERYMPRLMGHLHYR 132


>gi|291286506|ref|YP_003503322.1| Exonuclease RNase T and DNA polymerase III [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883666|gb|ADD67366.1| Exonuclease RNase T and DNA polymerase III [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 174

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 7/119 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    V  D +T G   +     +   ++ D       + E+F      +         I
Sbjct: 11  MAQK-VYIDMKTSGISPSKGEIIEICALKPDVDLM---TYEMFHAYIKINSDISEIFTEI 66

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            GI+ +     GV   +   R   F +    C I      +D  + ++ + +       
Sbjct: 67  EGISKEMLDEHGVSIEDAIARFDMFVT---GCEIVSFVPEYDLTFLKDAYSKCGLIFNH 122


>gi|258621526|ref|ZP_05716559.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258627541|ref|ZP_05722318.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580123|gb|EEW05095.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258586144|gb|EEW10860.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 176

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 21/151 (13%)

Query: 1   MTNHFVI-YDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           M  + V+ +D E          T G         +     +D    KI     +F KP  
Sbjct: 1   MNYNRVVCFDLEMCCWNENGVGTTG------EIIEVGLAEIDLSAGKIVKRAQYFVKPEK 54

Query: 50  DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           D +       +TGITP+K  + G    E  + + + F   N     +     DD    N 
Sbjct: 55  DEI-SLFCAELTGITPRKIEKQGRPLVEVLQSMVKNFGGSNKIYASW---GRDDLILINE 110

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
                       + N  + + +   ++    
Sbjct: 111 CREKGIPVPFQEFLNLATLYRIQHRLKDKRI 141


>gi|300780594|ref|ZP_07090449.1| oligoribonuclease [Corynebacterium genitalium ATCC 33030]
 gi|300533580|gb|EFK54640.1| oligoribonuclease [Corynebacterium genitalium ATCC 33030]
          Length = 217

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 7/115 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D       + A +  D +   ++          D  L   D     +
Sbjct: 17  DRIVWIDLEMTGLDPQRHVIVEVAALVTDAELNILDGGIDLVVHATDAELAEMDDFVTEM 76

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
            G +   ++     V   E    + +        +   +  N+I  D  + R   
Sbjct: 77  HGSSGLTEQIKASTVALREAEEAVLELVDKHCGEHRPPLAGNSIATDRTFIRAHM 131


>gi|54309733|ref|YP_130753.1| ribonuclease T [Photobacterium profundum SS9]
 gi|54036326|sp|Q6LP25|RNT_PHOPR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|46914171|emb|CAG20951.1| putative ribonuclease T [Photobacterium profundum SS9]
          Length = 223

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 65/220 (29%), Gaps = 31/220 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D        ST  F   P +  +   EA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGAVLHKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVSEETALKEIYKQIRKEQKTADCSRAIMVAHNANFDHSFVMEASERARL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                   N    +   D            +             L       GI   N  
Sbjct: 140 K------RNPFHPFATFDTAALSGLAFGQTV-------------LAKACKTAGIAFDNKE 180

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
           AH A  D   T  L   I  K  KL  +        ++ K
Sbjct: 181 AHSALYDTERTAELFCEIVNKWKKLGGWPLFESQTEEIDK 220


>gi|187933667|ref|YP_001886759.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721820|gb|ACD23041.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
          Length = 204

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 23/183 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
             + +D ET           Q + + VD   +  I + + FF    +    +P A  I G
Sbjct: 2   KLLFFDTETTSIKP--GSICQLSYITVDASSKPQITTGKNFFFTVDE---MNPSAQEIHG 56

Query: 63  ITPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            + +K   L +G    +      + F   +   +  +N+ FD  + ++       D    
Sbjct: 57  FSLEKLYELSEGQYFEDLVPEFFKDFIEAD--FLIGHNVNFDIRFLKHELSLLGEDFLPK 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                               +  D  + P  +    + KL+++    GI           
Sbjct: 115 HS-------------FCTMIYYKDICKIPKANGEVKNPKLEEVVTFLGINKDQITKTSDR 161

Query: 181 VYA 183
           ++ 
Sbjct: 162 LFQ 164


>gi|330719279|ref|ZP_08313879.1| DNA polymerase III, epsilon subunit [Leuconostoc fallax KCTC 3537]
          Length = 177

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 28/175 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +         A   V    + ++           +       V I GI
Sbjct: 2   NFIAMDFET--ANHERHSAVSIALAIVRDD-KIVDEFYSL---IRPETYFSRRNVAIHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                L      +E    I   F+     ++  +N  FD+   +        +       
Sbjct: 56  EEHDVLDAPK-FSELWPVIQPLFTEDK--LVVAHNAPFDNGVLKGTLNYYGLEE------ 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                + LLD +R    F P               KL  +A   GI  V+ H+A 
Sbjct: 107 ---PHYMLLDTVRTSRQFFPSFNN----------HKLNTVAENLGISLVHHHNAL 148


>gi|255549210|ref|XP_002515659.1| oligoribonuclease, mitochondrial, putative [Ricinus communis]
 gi|223545202|gb|EEF46711.1| oligoribonuclease, mitochondrial, putative [Ricinus communis]
          Length = 232

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 15/115 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G ++ +DR  + A +  D             I  ++    +  +       
Sbjct: 74  LVWIDMEMTGLNIEVDRVLEIACIITDGNLTKSVEGPDLVIHQSKECLEQMGEWCQSHHA 133

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
           A  +T    +K L+  V E E   ++ +F        T ++  N++  D  + + 
Sbjct: 134 ASGLT----EKVLQSTVSEREAETQVIEFVKRHVGTYTPLLAGNSVYVDFLFLKK 184


>gi|71900855|ref|ZP_00682972.1| Exonuclease [Xylella fastidiosa Ann-1]
 gi|71729379|gb|EAO31493.1| Exonuclease [Xylella fastidiosa Ann-1]
          Length = 193

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 32/126 (25%), Gaps = 13/126 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------ 58
            +  D E  G D   D   + A V  D Q   +     F      + L   EA+      
Sbjct: 14  LIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLNVL---EAMDEWNRN 70

Query: 59  -FITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
                   Q+ L   +  A+       F           +  N+I  D  +         
Sbjct: 71  QHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFLHRQMPCLE 130

Query: 115 YDSYRW 120
              +  
Sbjct: 131 RYFHYR 136


>gi|229523203|ref|ZP_04412610.1| ribonuclease T [Vibrio cholerae TM 11079-80]
 gi|229339566|gb|EEO04581.1| ribonuclease T [Vibrio cholerae TM 11079-80]
          Length = 224

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEGANLEKAALEFTG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201


>gi|121728127|ref|ZP_01681163.1| ribonuclease T [Vibrio cholerae V52]
 gi|121629595|gb|EAX62017.1| ribonuclease T [Vibrio cholerae V52]
          Length = 212

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 8   VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 67

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 68  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 127

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 128 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 168

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 169 AHSALYDTQKTAELFCTIVNQ 189


>gi|294795062|ref|ZP_06760197.1| exonuclease [Veillonella sp. 3_1_44]
 gi|294454424|gb|EFG22798.1| exonuclease [Veillonella sp. 3_1_44]
          Length = 209

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 59/186 (31%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   +   +     A + V +  +  +               D E + I 
Sbjct: 1   MLDFVALDFET--ANKFKNSACSLAVITV-KDGQITKKAYSLIK--PPFMSFDDECIEIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+  L +     E    I++  +     I+  +N +FD         R   D Y+  
Sbjct: 56  GIQPKDVLHE-KTFDELWNAIYE--NHLKGNIMVAHNAKFDMNVL-----RATLDYYKIP 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W       D    ++   A  PD +            KL  +A   G+E    H A  D 
Sbjct: 108 W----PELDYACTVKLSRAVWPDLVN----------HKLNTMAAYIGVEF-KHHYALDDA 152

Query: 182 YATLAL 187
                +
Sbjct: 153 ETCAKV 158


>gi|289706257|ref|ZP_06502619.1| exonuclease [Micrococcus luteus SK58]
 gi|289556980|gb|EFD50309.1| exonuclease [Micrococcus luteus SK58]
          Length = 208

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT- 61
            V  D E  G    +D   + A +  D +   ++       +P+   L   DP    +  
Sbjct: 14  LVWIDCEMTGLHPQVDELVEVAVLITDAELNILDEGIDLVIRPSAAALEQMDPFVRDMHT 73

Query: 62  --GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYY 105
             G+ P+ A  +G+   + + R+ ++ +        ++  N +  D  +
Sbjct: 74  TSGLLPELA--EGLELDDAAARVLEYIAARVPAGKGLLAGNTVGQDKLF 120


>gi|224372220|ref|YP_002606592.1| exonuclease family [Nautilia profundicola AmH]
 gi|223589909|gb|ACM93645.1| exonuclease family [Nautilia profundicola AmH]
          Length = 271

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 23/188 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           ++D ET            +A V  D Q    E    F            EA  +  I  +
Sbjct: 106 VFDTETTDI---YGYIISYAVVIQDMQSMDTEEIYDF---LNPKAKISEEAYEVHKIKQE 159

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                    AE      Q F   N  ++  +N+ +D    +    R  +           
Sbjct: 160 DIEHKP-TFAEKKDEFLQIFD--NLDMVVGHNVLYDFGVLKRELERAEHFPNII------ 210

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
               + D M           +   R +         +A   G ++ N HDA  DV  TL 
Sbjct: 211 -DIPIFDTMYYSADVVVLEKKKMPRLEEC-------VAFFFGKQNANYHDALEDVKMTLK 262

Query: 187 LVWLIREK 194
           +   + ++
Sbjct: 263 VFNRLLQE 270


>gi|239917482|ref|YP_002957040.1| oligoribonuclease (3'->5' exoribonuclease) [Micrococcus luteus NCTC
           2665]
 gi|281414027|ref|ZP_06245769.1| oligoribonuclease (3'->5' exoribonuclease) [Micrococcus luteus NCTC
           2665]
 gi|239838689|gb|ACS30486.1| oligoribonuclease (3'->5' exoribonuclease) [Micrococcus luteus NCTC
           2665]
          Length = 208

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 10/109 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA--DDYLPDPEAVFIT- 61
            V  D E  G    +D   + A +  D +   ++       +P+       DP    +  
Sbjct: 14  LVWIDCEMTGLHPQVDELVEVAVLITDAELNILDEGIDLVIRPSAAAFEQMDPFVRDMHT 73

Query: 62  --GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYY 105
             G+ P+ A  +G+   + + R+ ++ +        ++  N +  D  +
Sbjct: 74  TSGLLPELA--EGLELDDAAARVLEYIAARVPAGKGLLAGNTVGQDKLF 120


>gi|330446493|ref|ZP_08310145.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490684|dbj|GAA04642.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 218

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 59/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D        +T  F   P +  + + EA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVAPFEGAILNKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        S  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                   N    +   D            +             L        I   N  
Sbjct: 140 K------RNPFHPFATFDTAALSGLAFGQTV-------------LAKACQTANIPFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 181 AHSALYDTERTAELFCEIVNK 201


>gi|293395725|ref|ZP_06640007.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582]
 gi|291421662|gb|EFE94909.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582]
          Length = 222

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 66/265 (24%), Gaps = 52/265 (19%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           + D ET G D       + A + +    +         C    D     EA+ I  IT  
Sbjct: 5   VIDTETCGLD---GGIVEVASIDI-IDGQLANPMSDLVC---PDRPIGIEAMAIHHITEA 57

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                       +  I ++     +     +N  FD      +  R              
Sbjct: 58  MVEGKPR----IAVAIGRYM---GSEYYVAHNAAFDRGVLPEMNGR-------------- 96

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                +  ++   A  P         +    + L           +  H A  D Y T A
Sbjct: 97  ----WICTVKLARALYPGI----KYGNQYLRYALNLEVQLPQDTTLYPHRALYDCYVTAA 148

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW- 245
           L+  I +      E + +   +  L K                F   +     I  +A  
Sbjct: 149 LLQRIIKDSGWSAEEMANITEQPVLLK---------------TFKFGKYRGQPIDRIAQE 193

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDS 270
            P Y   ++         +   L  
Sbjct: 194 DPGYLRWMLKSITDLSPDMKHTLKY 218


>gi|313836680|gb|EFS74394.1| exonuclease [Propionibacterium acnes HL037PA2]
 gi|314929914|gb|EFS93745.1| exonuclease [Propionibacterium acnes HL044PA1]
 gi|314972342|gb|EFT16439.1| exonuclease [Propionibacterium acnes HL037PA3]
          Length = 202

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 17/113 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D E  G D+A D   + A +  D Q            KP   +L       +    
Sbjct: 2   LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWL-----EHMNDFV 56

Query: 65  PQKALRDGVVE------------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
                + G++E             +    IH +        +  N I  D  +
Sbjct: 57  RDMHTKSGLLEELDKGLTMMQAQEQVLDYIHTYVPQAGKAPLAGNTIGTDRSF 109


>gi|323223540|gb|EGA07861.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
          Length = 60

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 7/64 (10%)

Query: 7  IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
          I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4  IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56

Query: 67 KALR 70
              
Sbjct: 57 MVAD 60


>gi|89052623|ref|YP_508074.1| exonuclease [Jannaschia sp. CCS1]
 gi|88862172|gb|ABD53049.1| Exonuclease [Jannaschia sp. CCS1]
          Length = 196

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 28/198 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D ET   + A     Q     V       +S          +    P    + GI+
Sbjct: 17  FIAVDVET--ANNAQGSICQIGLCCVGSD----DSLNTVSTLIDPEQSFSPFNTDLHGIS 70

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          +    ++   +      +  ++ RFD+        R         W  
Sbjct: 71  AETVNGAP-TFPQAYASLYPVLNAHR---LVQHS-RFDEAAFTAACARYDVPMVTSHWT- 124

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D + + R  +              GA    L  L  A G+   + HDA  D  A+
Sbjct: 125 -----DSVKIARQAWP----------ELKGAGGHGLASLKKALGLSF-HHHDAGEDARAS 168

Query: 185 LALVWLIREKKPKLFEYL 202
             ++     +  K   +L
Sbjct: 169 ATVILRAEARISKAVAHL 186


>gi|150018815|ref|YP_001311069.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905280|gb|ABR36113.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 255

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 50/177 (28%), Gaps = 19/177 (10%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
              Q   +++D  ++++ +      KP       P    +T IT  K            +
Sbjct: 40  EIIQIGAIKLDNNFQEVSTFNSL-VKPTLYKTIHPYVENLTKITYDKVSSC-KNFINVHK 97

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
              +F    +  +  +              YRN       +          +     I  
Sbjct: 98  AFLEFIGDDDVLLCVWGVGDI------KELYRNLGFYNLSTS--------YISKYIDIQK 143

Query: 141 FSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPK 197
           ++   ++ P          ++ L   N   +   HDA  D Y T  +   I  K  K
Sbjct: 144 YASKYLKAPKNSRIGLRNAVEIL---NIPIYSEFHDALNDAYYTSEIFKRIYNKYMK 197


>gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
 gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
          Length = 309

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  E IE       KP +     P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIIEKVHYLI-KPKEMRFM-PINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P     + +   +   +I  +F+     ++  +N  FD         R+  + Y     
Sbjct: 57  RPHMVQDE-LEFDKIWGKIKGYFNNN---LVIAHNASFDMSVL-----RSTLELYNIK-- 105

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                ++ +  M+    F  +              KL  +    G +    HDA AD  A
Sbjct: 106 --MPSFEYICTMKLSKNFYSNIDN----------AKLNTVNNFLGYKF-QHHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|149185171|ref|ZP_01863488.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21]
 gi|148831282|gb|EDL49716.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21]
          Length = 260

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 16/123 (13%)

Query: 8   YDYETFGRDVALDRPAQFAG--VRVDRQWEKI------ESTEVFFCKPADDYLPDPEAVF 59
            D ET G D       +FAG  + VDRQ   +                      + +   
Sbjct: 2   IDLETEGFDAQYHHILEFAGAMIEVDRQGRILSVEGPKGGFN------DPGRPIERKIAE 55

Query: 60  ITGITPQKALRDGVVEAEFSRRI--HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           +TGIT +      +   + +  I         N      +         +  +     D 
Sbjct: 56  LTGITDEMVAGVRLSPRKLADWIGQADACLSFNAAFDRVHLEELVPEVGKMAWICAMADV 115

Query: 118 YRW 120
              
Sbjct: 116 NWR 118


>gi|330973293|gb|EGH73359.1| exonuclease [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 180

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 23/192 (11%)

Query: 2   TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E      G  VA     +     V++   +++  E  F +PA   L     
Sbjct: 1   MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T I  Q ++           +  ++ S     I+G+                  +  
Sbjct: 60  RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARIVGW----------------ASWGD 102

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
           Y         R   LD   +         ++           L       G++     H 
Sbjct: 103 YDRQQLEEEWRHHHLDSALSSMPHVNLKQRFAQARHLQKPIGLNSALQLAGMQFSGQQHR 162

Query: 177 AKADVYATLALV 188
           A  D   T  L+
Sbjct: 163 ALVDARNTARLL 174


>gi|313773620|gb|EFS39586.1| exonuclease [Propionibacterium acnes HL074PA1]
 gi|313793857|gb|EFS41881.1| exonuclease [Propionibacterium acnes HL110PA1]
 gi|313801249|gb|EFS42500.1| exonuclease [Propionibacterium acnes HL110PA2]
 gi|313811456|gb|EFS49170.1| exonuclease [Propionibacterium acnes HL083PA1]
 gi|313831196|gb|EFS68910.1| exonuclease [Propionibacterium acnes HL007PA1]
 gi|313834219|gb|EFS71933.1| exonuclease [Propionibacterium acnes HL056PA1]
 gi|313840029|gb|EFS77743.1| exonuclease [Propionibacterium acnes HL086PA1]
 gi|314963788|gb|EFT07888.1| exonuclease [Propionibacterium acnes HL082PA1]
 gi|314974073|gb|EFT18169.1| exonuclease [Propionibacterium acnes HL053PA1]
 gi|314976638|gb|EFT20733.1| exonuclease [Propionibacterium acnes HL045PA1]
 gi|314984301|gb|EFT28393.1| exonuclease [Propionibacterium acnes HL005PA1]
 gi|315079637|gb|EFT51630.1| exonuclease [Propionibacterium acnes HL053PA2]
 gi|315081132|gb|EFT53108.1| exonuclease [Propionibacterium acnes HL078PA1]
 gi|315095417|gb|EFT67393.1| exonuclease [Propionibacterium acnes HL038PA1]
 gi|327328524|gb|EGE70286.1| oligoribonuclease [Propionibacterium acnes HL096PA2]
 gi|327444311|gb|EGE90965.1| exonuclease [Propionibacterium acnes HL043PA2]
 gi|327444807|gb|EGE91461.1| exonuclease [Propionibacterium acnes HL043PA1]
 gi|327452117|gb|EGE98771.1| exonuclease [Propionibacterium acnes HL092PA1]
 gi|328759959|gb|EGF73543.1| oligoribonuclease [Propionibacterium acnes HL099PA1]
          Length = 202

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 34/129 (26%), Gaps = 19/129 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEAVFI 60
            V  D E  G D+A D   + A +  D Q            KP   +L         +  
Sbjct: 2   LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMHT 61

Query: 61  T---------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           T         G+T  +A        +    I  +        +  N I  D  +      
Sbjct: 62  TSGLLAELDKGLTMAQAQD------QVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAKDMP 115

Query: 112 RNFYDSYRW 120
           +     +  
Sbjct: 116 KLASYVHYR 124


>gi|188587656|ref|YP_001921717.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188497937|gb|ACD51073.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 204

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 23/183 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
             + +D ET           Q + + VD   +  I + + FF    +    +P A  I G
Sbjct: 2   KLLFFDTETTSIKP--GSICQLSYITVDASSKPQITTGKNFFFTVDE---MNPSAQEIHG 56

Query: 63  ITPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            + +K   L +G    +      + F   +   +  +N+ FD  + ++       D    
Sbjct: 57  FSLEKLYELSEGQYFEDLVPEFFKDFIEAD--FLIGHNVNFDIRFLKHELSLLGEDFLPK 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                               +  D  + P  +    + KL+++    GI           
Sbjct: 115 HS-------------FCTMMYYKDICKIPKANGEIKNPKLEEVVNFLGITKDQITKTSDR 161

Query: 181 VYA 183
           ++ 
Sbjct: 162 LFQ 164


>gi|154488091|ref|ZP_02029208.1| hypothetical protein BIFADO_01662 [Bifidobacterium adolescentis
           L2-32]
 gi|154083564|gb|EDN82609.1| hypothetical protein BIFADO_01662 [Bifidobacterium adolescentis
           L2-32]
          Length = 212

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 14/135 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL----PDPEAVFI 60
            +  D ET G      +  +   +  +     IE  + F C    D L     DP+ + +
Sbjct: 26  LLWIDTETTGISRTNAKLLEIGMIVTNLDG--IEEHDRFICPVRPDKLSLYDLDPKVLRM 83

Query: 61  T---GITPQKALRDGVVE--AEFSRRIHQFFSVPNTCIIGY---NNIRFDDYYSRNIFYR 112
               G+       +      A  +R +  F     +  + +    N+ +D     N    
Sbjct: 84  HLDNGLLDTVMETEPEEFGYANVARNLGAFLDTEASQYVLHPAGTNVDYDIDVLTNQLGP 143

Query: 113 NFYDSYRWSWDNGNS 127
           + +  +     N   
Sbjct: 144 HLHPDWLRQLTNHRK 158


>gi|304414192|ref|ZP_07395560.1| oligoribonuclease (3'->5' exoribonuclease) [Candidatus Regiella
          insecticola LSR1]
 gi|304283406|gb|EFL91802.1| oligoribonuclease (3'->5' exoribonuclease) [Candidatus Regiella
          insecticola LSR1]
          Length = 181

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           N+ +  D E  G     DR  + A +  D     +E 
Sbjct: 5  KNNLIWIDLEMTGLYPEHDRIIEIATLVTDANLNLLEE 42


>gi|238060285|ref|ZP_04604994.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
 gi|237882096|gb|EEP70924.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
          Length = 303

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/197 (10%), Positives = 45/197 (22%), Gaps = 19/197 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D E    +    R    A V  D                        +A    GIT + 
Sbjct: 86  FDLEGTLPEPMETRIVSAALVHSDG--------TTREWLVDPGVPIPADATARHGITDEM 137

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD-- 123
               G    +    +    +    ++  +      +D         R+   +  W     
Sbjct: 138 VRTGGRPARDALAELGTAIAKLIADSTPLVAFCAPYDVTALHTELARHGLPALDWDRAVV 197

Query: 124 -NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA------TSFKLQDLALANGIEHVNAHD 176
            + +     ++          D  ++              +    +LA +    H     
Sbjct: 198 IDPSVLHQQVEPRWYGRRQLGDLCRYYEVTLDNAHDAASDARAAAELARSIAARHERIAR 257

Query: 177 AKADVYATLALVWLIRE 193
            + D      + W   +
Sbjct: 258 MRPDALHQAQIGWHAEQ 274


>gi|115485705|ref|NP_001067996.1| Os11g0525900 [Oryza sativa Japonica Group]
 gi|77551213|gb|ABA94010.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
 gi|113645218|dbj|BAF28359.1| Os11g0525900 [Oryza sativa Japonica Group]
          Length = 319

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 45/185 (24%), Gaps = 6/185 (3%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFI 60
           FV+ D E     GR +      +FA V VD    E++      + +P            +
Sbjct: 23  FVVIDLEATCERGRRIYPQEIIEFASVVVDGATGEQLAEAFRAYVRPLHHRELTDYCREL 82

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI        GV   E  R    +                  +        +       
Sbjct: 83  TGIAQADV-DAGVDLREALRAHDAWLDARGVKNAAGGGGGGGGFAVVTWGDWDCRTMLEG 141

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL-QDLALANGIEHVNAHDAKA 179
                    D        +       +      GA    L + LA+A        H    
Sbjct: 142 ECRFKGIIGDGKPEYFDRWINLKVPFRQVFDRGGARRIGLEEALAVAGLAFEGRPHSGLD 201

Query: 180 DVYAT 184
           D   T
Sbjct: 202 DARNT 206


>gi|28198432|ref|NP_778746.1| oligoribonuclease [Xylella fastidiosa Temecula1]
 gi|182681104|ref|YP_001829264.1| oligoribonuclease [Xylella fastidiosa M23]
 gi|32129804|sp|Q87E07|ORN_XYLFT RecName: Full=Oligoribonuclease
 gi|28056516|gb|AAO28395.1| oligoribonuclease [Xylella fastidiosa Temecula1]
 gi|182631214|gb|ACB91990.1| Exonuclease RNase T and DNA polymerase III [Xylella fastidiosa M23]
 gi|307579552|gb|ADN63521.1| oligoribonuclease [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 193

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 32/126 (25%), Gaps = 13/126 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------ 58
            +  D E  G D   D   + A V  D Q   +     F      + L   EA+      
Sbjct: 14  LIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLNVL---EAMDEWNRN 70

Query: 59  -FITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
                   Q+ L   +  A+       F           +  N+I  D  +         
Sbjct: 71  QHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKIGASPMCGNSICQDRRFLHRQMPCLE 130

Query: 115 YDSYRW 120
              +  
Sbjct: 131 RYFHYR 136


>gi|91223788|ref|ZP_01259052.1| hypothetical protein V12G01_18627 [Vibrio alginolyticus 12G01]
 gi|91191280|gb|EAS77545.1| hypothetical protein V12G01_18627 [Vibrio alginolyticus 12G01]
          Length = 176

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 20/151 (13%)

Query: 3   NHFVIYDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           N  V +D E          + G         +     +D    +I     ++ KP  D +
Sbjct: 4   NRIVCFDLEMCCWNENGVGSTG------EIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEV 57

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +TGITP+K  + G    E  + + + F   N     +     DD        +
Sbjct: 58  -SLFCAELTGITPRKIEKQGRPLEEVLKSMVKNFGGRNKIFASW---GRDDLILLEECKQ 113

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143
              ++    + N  + + + + ++       
Sbjct: 114 KGIEAPFTEFINLATLYRIQNRLKDKRIGHR 144


>gi|261335679|emb|CBH18673.1| exonuclease, putative [Trypanosoma brucei gambiense DAL972]
          Length = 366

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 21/87 (24%), Gaps = 5/87 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK--IESTEVFFCKPADDYLPDPEAVFIT 61
           V  D ET G     D     A V            + S   F             A  + 
Sbjct: 104 VCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWVLSGRSFHRLVKPTKKVSSSAYRVH 163

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV 88
            +T +   R     A     +  F S 
Sbjct: 164 KLTSKVLERQP-PFAAILPDLAAFLSD 189


>gi|119474830|ref|ZP_01615183.1| oligoribonuclease [marine gamma proteobacterium HTCC2143]
 gi|119451033|gb|EAW32266.1| oligoribonuclease [marine gamma proteobacterium HTCC2143]
          Length = 195

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          + +  D E  G + A D   + A +  D     I  
Sbjct: 15 NLIWIDLEMTGLEPATDHIIEIATIVTDSDLNTIAE 50


>gi|238791781|ref|ZP_04635418.1| Exodeoxyribonuclease 10 [Yersinia intermedia ATCC 29909]
 gi|238728885|gb|EEQ20402.1| Exodeoxyribonuclease 10 [Yersinia intermedia ATCC 29909]
          Length = 219

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 68/265 (25%), Gaps = 54/265 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F I D ET G         + A +  VD                + D     +A+ I  I
Sbjct: 3   FRIIDTETCGL---AGGIVEVASIDLVDGALA-----NPMSDLISPDRPISIDAMVIHHI 54

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +            +  I ++    +   + +N              R         W 
Sbjct: 55  TEEMVEGKPR----IAVAIRRY--QGSPYYVAHNAPFD----------RGVLPEMGGQW- 97

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L + R +Y         P         +       +  +++  H A  D Y 
Sbjct: 98  -----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYV 143

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
           T AL+  I   +   +             + +      PL+  +  FG  R  +      
Sbjct: 144 TAALLQRI--MQDSGWN-----------AEQMAEITQQPLLLQTFKFGKYRGKSIEQIAR 190

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDL 268
              P Y   ++         +   L
Sbjct: 191 -QDPDYLRWMLASISDLTPDMRYTL 214


>gi|281337568|gb|EFB13152.1| hypothetical protein PANDA_015995 [Ailuropoda melanoleuca]
          Length = 365

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 53/211 (25%), Gaps = 23/211 (10%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 146 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 205

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRNFY 115
           I             +   R+ ++ +          +  +                     
Sbjct: 206 IIQAMVDGQP-SLQQVLERVDEWMAKEGLLDPNVKSIFVTC-GDWDLKVMLPGQCQYLGL 263

Query: 116 D--SYRWSWDNGNSRWDL---------LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
               Y   W N                L+             +            L D+ 
Sbjct: 264 PVADYFKQWINLKKVLKRGVPSGRTASLEEQAGKGESKSHCKKSSFAMGCWPKNGLLDMN 323

Query: 165 LANGIEH-VNAHDAKADVYATLALVWLIREK 194
               ++H    H    D      ++  +  +
Sbjct: 324 KGLSLQHIGRPHSGIDDCKNIANIMKTLAYQ 354


>gi|169628623|ref|YP_001702272.1| oligoribonuclease [Mycobacterium abscessus ATCC 19977]
 gi|169240590|emb|CAM61618.1| Probable oligoribonuclease [Mycobacterium abscessus]
          Length = 208

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 42/153 (27%), Gaps = 10/153 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D+  D+  + A +  D     +           D  L    P    +
Sbjct: 6   DELVWIDCEMTGLDLGSDKLIEIAALVTDGDLNILGEGVDVVIHADDAALAAMPPVVADM 65

Query: 61  T---GITPQ---KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+T +     +     EA     I Q  +   T  +  N+I  D  +         
Sbjct: 66  HAKSGLTKEVRTSVVTLQEAEAMVLDYIRQHVASAKTAPLAGNSIATDRGFI--ARDMPE 123

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
            D++        S    L        +     +
Sbjct: 124 LDAFLHYRMIDVSSIKELCRRWYPRIYFGQPDK 156


>gi|158341366|ref|YP_001522531.1| exonuclease [Acaryochloris marina MBIC11017]
 gi|158311607|gb|ABW33217.1| exonuclease [Acaryochloris marina MBIC11017]
          Length = 194

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 37/148 (25%), Gaps = 8/148 (5%)

Query: 5   FVIYDYE-----TFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAV 58
           ++I D E     TF          +   V V+    E I+   VF  KP           
Sbjct: 11  YLIVDLEATCCNTFSIPHKETETIEIGAVIVESVGLEIIDEFTVFI-KPIRHPKLTDFCT 69

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +T I             +      ++F      +         +   R   Y       
Sbjct: 70  ELTTIKQTDLEDAP-TFPQAVGTFKRWFEQYENSVFCSWGDYDKNQLERESKYHKIPYPM 128

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGI 146
                N   ++ L    +  Y  +   +
Sbjct: 129 GEEHFNLKKQFSLALRTKKHYGMAKALM 156


>gi|71650868|ref|XP_814123.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70879069|gb|EAN92272.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 391

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/345 (11%), Positives = 76/345 (22%), Gaps = 53/345 (15%)

Query: 8   YDYE-----TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +D E      FG D   +   +F            ++       P +      E   +T 
Sbjct: 90  FDLEFSGPPVFGPDGPTEDIIEFGFY-----SPAKDTVFSCLVNPTNGRRVSQEVTALTN 144

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDS-YRW 120
           IT +   ++G+   E   ++ +    P    + G  N      +   +   +        
Sbjct: 145 ITQEMLEKEGLPFPEAWEKVMETLMTPEPQELPGAENRLLVLSHGGKLADVSLIKWTLEA 204

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                       D    I          P +     S+ L DL         + AH A  
Sbjct: 205 HGLELPPALVFGDTFHFIRDAHRRRPVTPDKHP--PSWALADLVQWLKIPPTLPAHRAGN 262

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS--GMFGASRSNT 237
           D   T              ++ LY    +     L   + +               ++  
Sbjct: 263 DAKMT--------------WDALYHTLERYGDEDLTPREQLVSRFFDEEAREVMGQKNKR 308

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297
             I         +        +        L        +F+                  
Sbjct: 309 RFI---------ESDGTLATENAKTEASMGLSLDLDFDEIFSPG-------------GKR 346

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK 342
            K      +   K+E                  + Q   +++   
Sbjct: 347 KKAEASFTVSEAKQEDEYTDTEGRDDIRRRAKEVEQHPLVQEFLI 391


>gi|71274937|ref|ZP_00651225.1| Exonuclease [Xylella fastidiosa Dixon]
 gi|71898826|ref|ZP_00680994.1| Exonuclease [Xylella fastidiosa Ann-1]
 gi|170729792|ref|YP_001775225.1| oligoribonuclease [Xylella fastidiosa M12]
 gi|71164669|gb|EAO14383.1| Exonuclease [Xylella fastidiosa Dixon]
 gi|71731412|gb|EAO33475.1| Exonuclease [Xylella fastidiosa Ann-1]
 gi|167964585|gb|ACA11595.1| oligoribonuclease [Xylella fastidiosa M12]
          Length = 193

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 32/126 (25%), Gaps = 13/126 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------ 58
            +  D E  G D   D   + A V  D Q   +     F      + L   EA+      
Sbjct: 14  LIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLNVL---EAMDEWNRN 70

Query: 59  -FITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
                   Q+ L   +  A+       F           +  N+I  D  +         
Sbjct: 71  QHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFLHRQMPCLE 130

Query: 115 YDSYRW 120
              +  
Sbjct: 131 RYFHYR 136


>gi|327284033|ref|XP_003226743.1| PREDICTED: ERI1 exoribonuclease 2-like [Anolis carolinensis]
          Length = 260

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 66/203 (32%), Gaps = 20/203 (9%)

Query: 5   FVIYDYETFGRDVALDR-------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            +I D+E+       DR         +F  V ++    +IES    + +P +  L     
Sbjct: 38  LIIIDFEST---CWNDRRKCYSQEIIEFPAVLLNTSDGEIESEFHMYVQPQEHPLLSEFC 94

Query: 58  VFITGITPQKALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNI--RFDDYYSRNIFY 111
             +TGIT  +   DGV       +FS+ I +     N      ++     +      + +
Sbjct: 95  TELTGITQSQV-DDGVPLHICLSQFSKWIQKIQKEKNIIFTSGHSSCAASEGKLCAFVTW 153

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
            ++       ++    +    D++ +          + SR        LQD+ +      
Sbjct: 154 SDWDLGVCLHYECKRKQLRKPDILNSWIDLRATYKVFYSRKPQGLKGALQDVGIIFA--- 210

Query: 172 VNAHDAKADVYATLALVWLIREK 194
              H    D   T  L W +   
Sbjct: 211 GREHSGLDDSRNTAHLAWRMIRD 233


>gi|330802757|ref|XP_003289380.1| hypothetical protein DICPUDRAFT_56059 [Dictyostelium purpureum]
 gi|325080536|gb|EGC34087.1| hypothetical protein DICPUDRAFT_56059 [Dictyostelium purpureum]
          Length = 187

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 7/116 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
           +   V  D E  G D+  D   + A +  D +   IE         +++ L    +  I 
Sbjct: 11  SQRIVWVDLEMTGLDITKDCILEMACIITDSELNIIEKGPELVIHRSNEVLESMNSWCID 70

Query: 61  -TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIF 110
             G +    +     +   E    +  F           +  N++  D  +     
Sbjct: 71  HHGKSGLTDRVKNSKITIEEAQLEMFNFIEKHVGKEQAPLAGNSVYQDRKFLEKEM 126


>gi|78484978|ref|YP_390903.1| oligoribonuclease [Thiomicrospira crunogena XCL-2]
 gi|123555812|sp|Q31HZ4|ORN_THICR RecName: Full=Oligoribonuclease
 gi|78363264|gb|ABB41229.1| Exonuclease [Thiomicrospira crunogena XCL-2]
          Length = 184

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          N+ +  D E  G D   D+  + A V  D +   +  
Sbjct: 5  NNLIWIDLEMTGLDHKADQIIEIATVVTDAELNVLAE 41


>gi|225435975|ref|XP_002271328.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296083947|emb|CBI24335.3| unnamed protein product [Vitis vinifera]
          Length = 245

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 15/115 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G +V +DR  + A +  D             I  T+       +       
Sbjct: 66  LVWIDLEMTGLNVEVDRILEIACIITDGNLIKSVEGPDLVIHQTKECLDNMGEWCQSHHS 125

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
           A  +T     K LR  + E E  +++ +F        T ++  N++  D  + + 
Sbjct: 126 ASGLTK----KVLRSTISEQEAEKQVIEFVKRNVGTYTPLLAGNSVYMDFLFLKK 176


>gi|42522865|ref|NP_968245.1| oligoribonuclease [Bdellovibrio bacteriovorus HD100]
 gi|39574061|emb|CAE79238.1| Oligoribonuclease [Bdellovibrio bacteriovorus HD100]
          Length = 175

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD 50
           N     D E  G DV  +   + A +  D  ++++E+ E    +P   
Sbjct: 1  MNKLFWIDMEMTGLDVEKEVIIEVAAIVTDLNFKELETFETVVKQPQKY 49


>gi|38232702|ref|NP_938469.1| hypothetical protein DIP0068 [Corynebacterium diphtheriae NCTC
          13129]
 gi|38198960|emb|CAE48575.1| Hypothetical protein DIP0068 [Corynebacterium diphtheriae]
          Length = 102

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
          F + D  T G +   D   + A VR D  ++ ++S          D 
Sbjct: 31 FAVIDTGTTGFNKRYDHIIELAAVRADAYFKPVDSWHAL---LNPDT 74


>gi|118619032|ref|YP_907364.1| oligoribonuclease [Mycobacterium ulcerans Agy99]
 gi|166216272|sp|A0PU74|ORN_MYCUA RecName: Full=Oligoribonuclease
 gi|118571142|gb|ABL05893.1| oligoribonuclease Orn [Mycobacterium ulcerans Agy99]
          Length = 215

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 42/163 (25%), Gaps = 26/163 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    V  D E  G D+  D+  + A +  D     +            D +   +   +
Sbjct: 1   MREELVWIDCEMTGLDLGPDKLIEIAALVTDADLNILGDGV--------DVVIHADDAAL 52

Query: 61  TGITP---QKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
           + +         R G+              EA     I +    P T  +  N+I  D  
Sbjct: 53  SSMVDVVADMHSRSGLTEEVRASTVDMATAEAMVLDYIGEHVKQPKTAPLAGNSIATDRS 112

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
           +          D++        S    L        +     +
Sbjct: 113 FI--ARDMPALDAFLHYRMIDVSSIKELCRRWYPRIYFGQPPK 153


>gi|328710082|ref|XP_001950486.2| PREDICTED: oligoribonuclease, mitochondrial-like [Acyrthosiphon
           pisum]
          Length = 212

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFI 60
           ++ V +D E  G D       + A +  D+  + +  +       +D  L + E  +   
Sbjct: 37  HNIVWFDGEMTGLDCNHHTLIEAAIIITDKNLKVLAESPNIIIHQSDKVLENMEEWSKKH 96

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQF---FSVPNTCIIGYNNIRFDDYYSRN 108
            GI+   +   +  +   +  + +++F   F+    C +  N+I  D  + R 
Sbjct: 97  HGISGLTENVRKSNISIEQADQMLYEFIKPFAPKGVCPLAGNSIHMDRTFIRK 149


>gi|260912289|ref|ZP_05918840.1| exonuclease [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633590|gb|EEX51729.1| exonuclease [Prevotella sp. oral taxon 472 str. F0295]
          Length = 165

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 46/175 (26%), Gaps = 26/175 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +   +       V V  + + + S      +P  +Y  +   V + 
Sbjct: 1   MKDFAAIDFET--ANFRRESVCSVGLVLV-EEGKVVGSYYHLI-QPTPNY-FEERCVTVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T            +    I           +  +N  FD+   +  F     +     
Sbjct: 56  GLTTADTNGQP-TFPDVWAEIAPLIRNK---PLVAHNKAFDESCLKAAFAAYDME----- 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  +     +        +         G   FKL  +A   G E    H 
Sbjct: 107 ----YPDYPFYCTLLTARHKLKEA--------GLADFKLPTVASHCGYELDKHHH 149


>gi|68163427|ref|NP_001020160.1| three prime repair exonuclease 1 [Rattus norvegicus]
 gi|60688197|gb|AAH91242.1| Trex1 protein [Rattus norvegicus]
 gi|149018474|gb|EDL77115.1| rCG26064 [Rattus norvegicus]
          Length = 316

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 63/221 (28%), Gaps = 29/221 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---------------FFCK 46
               +  D E  G   +  +  +   + V R   +  S                      
Sbjct: 11  MQTLIFLDLEATGLPYSQPKITELCLLAVHRHALENSSMSEGQPPPVPKPPRVVDKLSLC 70

Query: 47  PADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIRFD 102
            A        A  ITG+T       G     +    + Q F        C++ +N  R+D
Sbjct: 71  IAPGKPCSSGASEITGLTTAGLEAHGRQRFNDNLATLLQVFLQRQPQPCCLVAHNGDRYD 130

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
               +             S  +G    D +  ++     + +    PS      S+ L  
Sbjct: 131 FPLLQAELASLSV----ISPLDGTFCVDSIAALK-----TLEQASSPSEHGPRKSYSLGS 181

Query: 163 L-ALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
           +     G    ++H A+ DV A L++     +   +  +  
Sbjct: 182 IYTRLYGQAPTDSHTAEGDVLALLSICQWKPQALLQWVDKH 222


>gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA
           2018]
          Length = 317

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 29/191 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F   D+ET   +   + P     V V +    +E +         +    P  + I GI
Sbjct: 13  KFTAIDFET--ANEKRNSPCSIGIVVV-KDGHVVEKSHHLIR--PKEMRFMPINIGIHGI 67

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P    ++     +   +I  +F      ++  +N  FD    R        +   +++ 
Sbjct: 68  RPAMVEKEPE-FDKVWEKIKHYFDD---TLVIAHNASFDISVLRKSAELYNIELPEFNY- 122

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   + + R  Y              G  + KL  +    G E    HDA  D  A
Sbjct: 123 -----ICTMKLARNFY-------------KGIENAKLNTVNNFLGYEF-RHHDALYDALA 163

Query: 184 TLALVWLIREK 194
              ++  I ++
Sbjct: 164 CSNIMLSISKE 174


>gi|229525619|ref|ZP_04415024.1| ribonuclease T [Vibrio cholerae bv. albensis VL426]
 gi|229339200|gb|EEO04217.1| ribonuclease T [Vibrio cholerae bv. albensis VL426]
          Length = 224

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEGANLEKAALEFTG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201


>gi|38234384|ref|NP_940151.1| oligoribonuclease [Corynebacterium diphtheriae NCTC 13129]
 gi|48428192|sp|P61650|ORN_CORDI RecName: Full=Oligoribonuclease
 gi|38200647|emb|CAE50343.1| oligoribonuclease [Corynebacterium diphtheriae]
          Length = 210

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 8/118 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT- 61
           +  V  D E  G ++      + A +  D     I            + L + +    T 
Sbjct: 10  DRLVWIDLEMTGLELDRHVIVEVAALITDADLNIIGEGVDLVVHATPEQLAEMDDFVTTM 69

Query: 62  GITP---QKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112
             +    ++     V   E    +    +      +   +  N+I  D  + R    R
Sbjct: 70  HTSSGLLEEIKASTVSLQEAEDAVLALIAQHCDPEHPAPLAGNSIATDRSFIRAQMPR 127


>gi|329889237|ref|ZP_08267580.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844538|gb|EGF94102.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
          Length = 211

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 64/212 (30%), Gaps = 29/212 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET   +     P       ++     IES E  + +P          +   GI P
Sbjct: 11  VAIDFET--ANEQRASPCSIGLAWINDG--VIESVEHHYIRP-PGMRFASFNIAFHGIGP 65

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++         EF   +           +  +N  FD         RN  D Y  ++   
Sbjct: 66  EQVEDA----EEFPAVLAAIAPRLEGRTVLAHNAAFDVSVI-----RNTCDHYGLTY--- 113

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +D L  ++           WP       S KL ++    G+     HDA  D +A  
Sbjct: 114 -PEFDYLCTVKLAQIS------WP----EFPSHKLNNVCAELGVAF-RHHDAAEDAFACA 161

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
           ++     +             ++  + ++   
Sbjct: 162 SVALAAAQVHQAADCRALADASRLTMGRVWRD 193


>gi|313884945|ref|ZP_07818697.1| DNA polymerase III, epsilon subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619636|gb|EFR31073.1| DNA polymerase III, epsilon subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 199

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 28/183 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
             ++ +D E    +    +  Q + VR  +Q +++   + F      D+        +TG
Sbjct: 5   KDYIAFDLEFTSFE-EDSQIIQVSAVRF-KQGQEVAHFDSF---VNTDHAIPSFISGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT  +      ++         F       +IGYN ++ D    +               
Sbjct: 60  ITLDQIQAAPKIDT-VMNEFKDFVGDLP--LIGYNALKSDLPLLKANNLDL--------- 107

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +   + D+ +  R        G +            LQ +A    I+    H++  D  
Sbjct: 108 -DAQYQIDVYEEARNRRDSYLAGSR---------GLSLQAVANYFKIK-GRGHNSLNDAR 156

Query: 183 ATL 185
            T 
Sbjct: 157 MTA 159


>gi|242014471|ref|XP_002427913.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis]
 gi|212512397|gb|EEB15175.1| 3' histone mRNA exonuclease, putative [Pediculus humanus corporis]
          Length = 386

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 81/258 (31%), Gaps = 27/258 (10%)

Query: 5   FVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +V+ D+E    +  +DR    +F  V V+ + +KIE     +CKP  +       + +TG
Sbjct: 105 YVVIDFEATCDNKKIDRQEIIEFPAVLVNSKKQKIEDCFRMYCKPRINPKLSQYCMELTG 164

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPN--------TCIIGYNNIRFDDYYSRNIF---- 110
           IT ++         +     + +    N          +   N        S+  +    
Sbjct: 165 ITQEQVDNA-ETFDKVLSHYNNWLKKHNLGTKNKRYAVVTDGNWDMSKFLVSQCHYSNVP 223

Query: 111 -------YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
                  + N   +++  +  G +R  L  ++  +             D    +  L  +
Sbjct: 224 IPKWGKTWVNLKKTFKNFYQKGENRICLKTMLEMLNMEFIGRPHCGLDDAKNIARILLKM 283

Query: 164 ALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ--NMT 221
                   +N   A       + +   I +   +      +  +K+ +  + + Q     
Sbjct: 284 IYDGSNIQINERLASVRR---VNINKNINDDDTEDSRTTLNDGDKSNMEDMDEEQIPKFK 340

Query: 222 PLVHVSGMFGASRSNTAL 239
              +V  +    ++   +
Sbjct: 341 VKTYVQSINSTGKTYNRI 358


>gi|269102191|ref|ZP_06154888.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162089|gb|EEZ40585.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 221

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 56/199 (28%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D        +T  F   P +  +   EA+   G
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLKMDDDGWLHPATTLHFHVTPFEGAILHKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I +        +  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVSEDTALKEIFKQIRKEQKNADCSRAIMVAHNANFDHSFVMAAAERAKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                           ++  AH
Sbjct: 140 KRNPFHPFATFDTAALSGLALGQTVLAKACQ-----------------TANIPFDNKEAH 182

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  K
Sbjct: 183 SALYDTERTAELFCKIVNK 201


>gi|254281582|ref|ZP_04956550.1| oligoribonuclease [gamma proteobacterium NOR51-B]
 gi|219677785|gb|EED34134.1| oligoribonuclease [gamma proteobacterium NOR51-B]
          Length = 180

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 17/130 (13%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLP- 53
            + +  D E  G      R  + A +  D    +        I  ++    K  +  +  
Sbjct: 5   QNLIWVDLEMTGLVPEEHRVIEIATIVTDSALNELAQGPVLAIHQSDAELSKMDEWNVNT 64

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
              +  +      +    G+ E         F           +  N+I  D  +     
Sbjct: 65  HTGSGLV-----DRVKSSGLDEGAAVSETLAFLKEWVSAGASPMCGNSICQDRRFMARHM 119

Query: 111 YRNFYDSYRW 120
                  +  
Sbjct: 120 PELEAYFHYR 129


>gi|41408418|ref|NP_961254.1| oligoribonuclease [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|48428193|sp|P61651|ORN_MYCPA RecName: Full=Oligoribonuclease
 gi|41396774|gb|AAS04637.1| hypothetical protein MAP_2320 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 215

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 42/155 (27%), Gaps = 20/155 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M +  V  D E  G D+  D+  + A +  D +   +          ADD         +
Sbjct: 1   MRDELVWIDCEMTGLDLGSDKLIEIAALVTDAELNVLGDGVDVVIH-ADDAALAAMGEVV 59

Query: 61  TGITPQKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
           T    +   R G++             E      I      P T  +  N+I  D  +  
Sbjct: 60  T----EMHSRSGLIDEVKASTVDLATAEEMVLDYIRTHVKAPKTAPLAGNSIATDRAFIV 115

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
                   D+Y        S    L        + 
Sbjct: 116 R--DMPALDAYLHYRMIDVSSIKELCRRWYPRIYF 148


>gi|332525250|ref|ZP_08401423.1| oligoribonuclease [Rubrivivax benzoatilyticus JA2]
 gi|332108532|gb|EGJ09756.1| oligoribonuclease [Rubrivivax benzoatilyticus JA2]
          Length = 186

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60
            + +  D E  G   A DR  + A V  D Q        VF    +D  L   +A     
Sbjct: 11  QNLIWIDLEMTGLYPATDRIIEIAVVVTDPQLTVRVEGPVFAVHQSDATLDAMDAWNKGT 70

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +     V EAE   R  +F           +  N+I  D  +  N   +   
Sbjct: 71  HGRSGLIDRVKASTVDEAEAEARTIEFLQRYVPRGKSPMCGNSICQDRRFLANYMPKLEA 130

Query: 116 DSYRW 120
             +  
Sbjct: 131 FFHYR 135


>gi|330954430|gb|EGH54690.1| exonuclease [Pseudomonas syringae Cit 7]
          Length = 180

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 7/120 (5%)

Query: 2   TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E      G  VA     +     V++   +++  E  F +PA   L     
Sbjct: 1   MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYD 116
             +T I  Q ++           +  ++ S     I+G+ +   +D       + ++  D
Sbjct: 60  RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARIVGWASWGDYDRQQLEEEWRQHHLD 118


>gi|327329611|gb|EGE71367.1| oligoribonuclease [Propionibacterium acnes HL096PA3]
          Length = 202

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 34/129 (26%), Gaps = 19/129 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEAVFI 60
            V  D E  G D+A D   + A +  D Q            KP   +L         +  
Sbjct: 2   LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMHT 61

Query: 61  T---------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           T         G+T  +A        +    I  +        +  N I  D  +      
Sbjct: 62  TSGLLAELDKGLTMAQAQD------QVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAKDMP 115

Query: 112 RNFYDSYRW 120
           +     +  
Sbjct: 116 KLESYVHYR 124


>gi|269963670|ref|ZP_06177992.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831582|gb|EEZ85719.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 176

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 20/151 (13%)

Query: 3   NHFVIYDYET----------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           N  V +D E            G         +     +D    +I     ++ KP  D +
Sbjct: 4   NRIVCFDLEMCCWNENGVGRTG------EIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEV 57

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +TGITP+K  + G    E  + + + F   N     +     DD        +
Sbjct: 58  -SLFCAELTGITPRKIEKQGRPLEEVLKSMLKNFGGRNKIYASW---GRDDLILLEECQQ 113

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143
              D+    + N  + + + + ++       
Sbjct: 114 KGIDAPFTEFINLATLYRIQNRLKEKRIGHR 144


>gi|238569519|ref|XP_002386676.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553]
 gi|215439222|gb|EEB87606.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553]
          Length = 172

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 15/146 (10%)

Query: 47  PADDYLPD-PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
              + +P  P A+ + GI   + +      +  + ++  F +   + + GYN  +FD  +
Sbjct: 13  LNPEGIPSHPMALQLHGIQDAELVAPLPTFSAHAEQLRSFLA--GSIMTGYNITKFDLAF 70

Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
               F+R        +W         +D +     F P   +   +              
Sbjct: 71  LTAEFHRCGI-----TWSPAGEGIGTIDTLALYRRFRPQEYKRGGKL-------FSAYLH 118

Query: 166 ANGIEHVNAHDAKADVYATLALVWLI 191
             G     AH+A+AD +  L L++ +
Sbjct: 119 FVGGWQTQAHNAEADAFTALRLLYAM 144


>gi|145579949|pdb|2O4G|A Chain A, Structure Of Trex1 In Complex With A Nucleotide
 gi|145579950|pdb|2O4G|B Chain B, Structure Of Trex1 In Complex With A Nucleotide
 gi|145579951|pdb|2O4G|C Chain C, Structure Of Trex1 In Complex With A Nucleotide
 gi|145579952|pdb|2O4G|D Chain D, Structure Of Trex1 In Complex With A Nucleotide
 gi|206581855|pdb|3B6O|A Chain A, Structure Of Trex1 In Complex With A Nucleotide And An
           Inhibitor Ion (Lithium)
 gi|206581856|pdb|3B6O|B Chain B, Structure Of Trex1 In Complex With A Nucleotide And An
           Inhibitor Ion (Lithium)
 gi|206581857|pdb|3B6O|C Chain C, Structure Of Trex1 In Complex With A Nucleotide And An
           Inhibitor Ion (Lithium)
 gi|206581858|pdb|3B6O|D Chain D, Structure Of Trex1 In Complex With A Nucleotide And An
           Inhibitor Ion (Lithium)
 gi|206581859|pdb|3B6P|A Chain A, Structure Of Trex1 In Complex With A Nucleotide And
           Inhibitor Ions (Sodium And Zinc)
 gi|206581860|pdb|3B6P|B Chain B, Structure Of Trex1 In Complex With A Nucleotide And
           Inhibitor Ions (Sodium And Zinc)
 gi|206581861|pdb|3B6P|C Chain C, Structure Of Trex1 In Complex With A Nucleotide And
           Inhibitor Ions (Sodium And Zinc)
 gi|206581862|pdb|3B6P|D Chain D, Structure Of Trex1 In Complex With A Nucleotide And
           Inhibitor Ions (Sodium And Zinc)
          Length = 247

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 33/223 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               +  D E  G   +     +   + V R    +E+T +                   
Sbjct: 13  MQTLIFLDLEATGLPSSRPEVTELCLLAVHR--RALENTSISQGHPPPVPRPPRVVDKLS 70

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIR 100
              A      P A  ITG++  +    G    +   +  +  F        C++ +N  R
Sbjct: 71  LCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 130

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +    R    S      +G    D +  ++     + +    PS +    S+ L
Sbjct: 131 YDFPLLQTELARLSTPSPL----DGTFCVDSIAALK-----ALEQASSPSGNGSRKSYSL 181

Query: 161 QDLALANGIEH-VNAHDAKADVYATLALVWLIREKKPKLFEYL 202
             +      +   ++H A+ DV   L++     +   +  +  
Sbjct: 182 GSIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWVDEH 224


>gi|262394326|ref|YP_003286180.1| hypothetical protein VEA_003555 [Vibrio sp. Ex25]
 gi|262337920|gb|ACY51715.1| hypothetical protein VEA_003555 [Vibrio sp. Ex25]
          Length = 176

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 20/148 (13%)

Query: 3   NHFVIYDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           N  V +D E          + G         +     +D    +I     ++ KP  D +
Sbjct: 4   NRIVCFDLEMCCWNENGVGSTG------EIIEVGLAEIDLSRGEIVKRAQYYVKPEHDEV 57

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +TGITP+K  + G    E  + + + F   N     +     DD        +
Sbjct: 58  -SLFCAELTGITPRKIEKQGRPLEEVLKSMVKNFGGRNKIYASW---GRDDLILLEECKQ 113

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
              ++    + N  + + + + ++    
Sbjct: 114 KGIEAPFTEFINLATLYRIQNRLKDKRI 141


>gi|15029820|gb|AAH11133.1| Three prime repair exonuclease 1 [Mus musculus]
          Length = 314

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 33/223 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               +  D E  G   +     +   + V R    +E+T +                   
Sbjct: 11  MQTLIFLDLEATGLPSSRPEVTELCLLAVHR--RALENTSISQGLPPPVPRPPRVVDKLS 68

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIR 100
              A      P A  ITG++  +    G    +   +  +  F        C++ +N  R
Sbjct: 69  LCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 128

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +    R    S      +G    D +  ++     + +    PS +    S+ L
Sbjct: 129 YDFPLLQTELARLSTPSPL----DGTFCVDSIAALK-----ALEQASSPSGNGSRKSYSL 179

Query: 161 QDLALANGIEH-VNAHDAKADVYATLALVWLIREKKPKLFEYL 202
             +      +   ++H A+ DV   L++     +   +  +  
Sbjct: 180 GSIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWVDEH 222


>gi|50843110|ref|YP_056337.1| oligoribonuclease [Propionibacterium acnes KPA171202]
 gi|81826407|sp|Q6A786|ORN_PROAC RecName: Full=Oligoribonuclease
 gi|50840712|gb|AAT83379.1| oligoribonuclease [Propionibacterium acnes KPA171202]
 gi|313763467|gb|EFS34831.1| exonuclease [Propionibacterium acnes HL013PA1]
 gi|313808072|gb|EFS46553.1| exonuclease [Propionibacterium acnes HL087PA2]
 gi|313813519|gb|EFS51233.1| exonuclease [Propionibacterium acnes HL025PA1]
 gi|313816648|gb|EFS54362.1| exonuclease [Propionibacterium acnes HL059PA1]
 gi|313819642|gb|EFS57356.1| exonuclease [Propionibacterium acnes HL046PA2]
 gi|313822034|gb|EFS59748.1| exonuclease [Propionibacterium acnes HL036PA1]
 gi|313823730|gb|EFS61444.1| exonuclease [Propionibacterium acnes HL036PA2]
 gi|313826052|gb|EFS63766.1| exonuclease [Propionibacterium acnes HL063PA1]
 gi|313829524|gb|EFS67238.1| exonuclease [Propionibacterium acnes HL063PA2]
 gi|314914829|gb|EFS78660.1| exonuclease [Propionibacterium acnes HL005PA4]
 gi|314919419|gb|EFS83250.1| exonuclease [Propionibacterium acnes HL050PA1]
 gi|314920674|gb|EFS84505.1| exonuclease [Propionibacterium acnes HL050PA3]
 gi|314924777|gb|EFS88608.1| exonuclease [Propionibacterium acnes HL036PA3]
 gi|314930554|gb|EFS94385.1| exonuclease [Propionibacterium acnes HL067PA1]
 gi|314954492|gb|EFS98898.1| exonuclease [Propionibacterium acnes HL027PA1]
 gi|314957575|gb|EFT01678.1| exonuclease [Propionibacterium acnes HL002PA1]
 gi|314961982|gb|EFT06083.1| exonuclease [Propionibacterium acnes HL002PA2]
 gi|314968385|gb|EFT12483.1| exonuclease [Propionibacterium acnes HL037PA1]
 gi|314978912|gb|EFT23006.1| exonuclease [Propionibacterium acnes HL072PA2]
 gi|314986647|gb|EFT30739.1| exonuclease [Propionibacterium acnes HL005PA2]
 gi|314991003|gb|EFT35094.1| exonuclease [Propionibacterium acnes HL005PA3]
 gi|315083650|gb|EFT55626.1| exonuclease [Propionibacterium acnes HL027PA2]
 gi|315087019|gb|EFT58995.1| exonuclease [Propionibacterium acnes HL002PA3]
 gi|315089194|gb|EFT61170.1| exonuclease [Propionibacterium acnes HL072PA1]
 gi|315099093|gb|EFT71069.1| exonuclease [Propionibacterium acnes HL059PA2]
 gi|315100423|gb|EFT72399.1| exonuclease [Propionibacterium acnes HL046PA1]
 gi|315106884|gb|EFT78860.1| exonuclease [Propionibacterium acnes HL030PA1]
 gi|315109117|gb|EFT81093.1| exonuclease [Propionibacterium acnes HL030PA2]
 gi|327334124|gb|EGE75838.1| oligoribonuclease [Propionibacterium acnes HL097PA1]
 gi|327446295|gb|EGE92949.1| exonuclease [Propionibacterium acnes HL013PA2]
 gi|327454846|gb|EGF01501.1| exonuclease [Propionibacterium acnes HL087PA3]
 gi|327457869|gb|EGF04524.1| exonuclease [Propionibacterium acnes HL083PA2]
 gi|328752440|gb|EGF66056.1| exonuclease [Propionibacterium acnes HL020PA1]
 gi|328755323|gb|EGF68939.1| exonuclease [Propionibacterium acnes HL087PA1]
 gi|328758196|gb|EGF71812.1| exonuclease [Propionibacterium acnes HL025PA2]
 gi|332676038|gb|AEE72854.1| oligoribonuclease [Propionibacterium acnes 266]
          Length = 202

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 34/129 (26%), Gaps = 19/129 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEAVFI 60
            V  D E  G D+A D   + A +  D Q            KP   +L         +  
Sbjct: 2   LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMHT 61

Query: 61  T---------GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
           T         G+T  +A        +    I  +        +  N I  D  +      
Sbjct: 62  TSGLLAELDKGLTMAQAQD------QVLDYIRTYVPQAGKAPLAGNTIGTDRSFLAKDMP 115

Query: 112 RNFYDSYRW 120
           +     +  
Sbjct: 116 KLESYVHYR 124


>gi|59624979|ref|NP_035767.4| three prime repair exonuclease 1 [Mus musculus]
 gi|59624981|ref|NP_001012236.1| three prime repair exonuclease 1 [Mus musculus]
 gi|47606196|sp|Q91XB0|TREX1_MOUSE RecName: Full=Three prime repair exonuclease 1; AltName: Full=3'-5'
           exonuclease TREX1
 gi|12751325|gb|AAK07621.1|AF319574_1 3'-5' exonuclease Trex1 [Mus musculus]
 gi|11092297|gb|AAD48775.2| 3'-5' exonuclease TREX1 [Mus musculus]
 gi|26352780|dbj|BAC40020.1| unnamed protein product [Mus musculus]
 gi|26366683|dbj|BAB26571.2| unnamed protein product [Mus musculus]
 gi|74179024|dbj|BAE42731.1| unnamed protein product [Mus musculus]
 gi|148689391|gb|EDL21338.1| three prime repair exonuclease 1, isoform CRA_a [Mus musculus]
 gi|148689392|gb|EDL21339.1| three prime repair exonuclease 1, isoform CRA_a [Mus musculus]
          Length = 314

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 33/223 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               +  D E  G   +     +   + V R    +E+T +                   
Sbjct: 11  MQTLIFLDLEATGLPSSRPEVTELCLLAVHR--RALENTSISQGHPPPVPRPPRVVDKLS 68

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIR 100
              A      P A  ITG++  +    G    +   +  +  F        C++ +N  R
Sbjct: 69  LCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 128

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +    R    S      +G    D +  ++     + +    PS +    S+ L
Sbjct: 129 YDFPLLQTELARLSTPSPL----DGTFCVDSIAALK-----ALEQASSPSGNGSRKSYSL 179

Query: 161 QDLALANGIEH-VNAHDAKADVYATLALVWLIREKKPKLFEYL 202
             +      +   ++H A+ DV   L++     +   +  +  
Sbjct: 180 GSIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWVDEH 222


>gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
 gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
          Length = 309

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  E +E           +    P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLIK--PKEMRFMPINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P     + +   +  ++I  +F+     ++  +N  FD    R+             ++
Sbjct: 57  RPHMVKDE-LEFDKIWQKIKDYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                ++ +  M+    F  +              +L  +    G +    HDA AD  A
Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTINNFLGYKF-KHHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|332076265|gb|EGI86731.1| exonuclease family protein [Streptococcus pneumoniae GA41301]
          Length = 196

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 61/196 (31%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R   +I++ + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +      +F    +  +IGYN  + D                  
Sbjct: 58  TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              N   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 108 ---NQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYESFLESDQ 170


>gi|254291880|ref|ZP_04962663.1| ribonuclease T [Vibrio cholerae AM-19226]
 gi|150422240|gb|EDN14204.1| ribonuclease T [Vibrio cholerae AM-19226]
          Length = 224

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201


>gi|28898216|ref|NP_797821.1| hypothetical protein VP1442 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836508|ref|ZP_01989175.1| exonuclease KapD [Vibrio parahaemolyticus AQ3810]
 gi|260361750|ref|ZP_05774777.1| exonuclease KapD [Vibrio parahaemolyticus K5030]
 gi|260878557|ref|ZP_05890912.1| exonuclease KapD [Vibrio parahaemolyticus AN-5034]
 gi|260898982|ref|ZP_05907423.1| exonuclease KapD [Vibrio parahaemolyticus Peru-466]
 gi|260902016|ref|ZP_05910411.1| exonuclease KapD [Vibrio parahaemolyticus AQ4037]
 gi|28806433|dbj|BAC59705.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750106|gb|EDM60851.1| exonuclease KapD [Vibrio parahaemolyticus AQ3810]
 gi|308087959|gb|EFO37654.1| exonuclease KapD [Vibrio parahaemolyticus Peru-466]
 gi|308091327|gb|EFO41022.1| exonuclease KapD [Vibrio parahaemolyticus AN-5034]
 gi|308107728|gb|EFO45268.1| exonuclease KapD [Vibrio parahaemolyticus AQ4037]
 gi|308113624|gb|EFO51164.1| exonuclease KapD [Vibrio parahaemolyticus K5030]
 gi|328473772|gb|EGF44607.1| hypothetical protein VP10329_13955 [Vibrio parahaemolyticus 10329]
          Length = 176

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 20/151 (13%)

Query: 3   NHFVIYDYET----------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           N  V +D E            G         +     +D    +I     ++ KP  D +
Sbjct: 4   NRIVCFDLEMCCWSENGVGRTG------EIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEV 57

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +TGITP+K  + G   AE  + + + F   N     +     DD        +
Sbjct: 58  -SLFCAELTGITPRKIEKQGRPLAEVIKSMIKNFGGRNKIYASW---GRDDVILLEECKQ 113

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143
              ++    + N  + + + + ++       
Sbjct: 114 KGIEAPFTEFINLATLYRIQNRLKDKRIGHR 144


>gi|229505395|ref|ZP_04394905.1| ribonuclease T [Vibrio cholerae BX 330286]
 gi|229510935|ref|ZP_04400414.1| ribonuclease T [Vibrio cholerae B33]
 gi|229512432|ref|ZP_04401905.1| ribonuclease T [Vibrio cholerae TMA 21]
 gi|229518056|ref|ZP_04407500.1| ribonuclease T [Vibrio cholerae RC9]
 gi|229529900|ref|ZP_04419290.1| ribonuclease T [Vibrio cholerae 12129(1)]
 gi|229608414|ref|YP_002879062.1| ribonuclease T [Vibrio cholerae MJ-1236]
 gi|255744788|ref|ZP_05418739.1| ribonuclease T [Vibrio cholera CIRS 101]
 gi|262151277|ref|ZP_06028413.1| ribonuclease T [Vibrio cholerae INDRE 91/1]
 gi|262167159|ref|ZP_06034872.1| ribonuclease T [Vibrio cholerae RC27]
 gi|14548237|sp|Q9KT97|RNT_VIBCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|229333674|gb|EEN99160.1| ribonuclease T [Vibrio cholerae 12129(1)]
 gi|229344771|gb|EEO09745.1| ribonuclease T [Vibrio cholerae RC9]
 gi|229350513|gb|EEO15460.1| ribonuclease T [Vibrio cholerae TMA 21]
 gi|229350900|gb|EEO15841.1| ribonuclease T [Vibrio cholerae B33]
 gi|229357618|gb|EEO22535.1| ribonuclease T [Vibrio cholerae BX 330286]
 gi|229371069|gb|ACQ61492.1| ribonuclease T [Vibrio cholerae MJ-1236]
 gi|255737819|gb|EET93213.1| ribonuclease T [Vibrio cholera CIRS 101]
 gi|262024380|gb|EEY43068.1| ribonuclease T [Vibrio cholerae RC27]
 gi|262030968|gb|EEY49596.1| ribonuclease T [Vibrio cholerae INDRE 91/1]
          Length = 224

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201


>gi|154340886|ref|XP_001566396.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063719|emb|CAM39904.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 508

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 65/246 (26%), Gaps = 21/246 (8%)

Query: 9   DYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           D+E     G         +F  V +D      +      + +P  +         +TGIT
Sbjct: 233 DFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFH-RYVRPLRNPKLTAFCTELTGIT 291

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPN----TCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            +              +   +              +       +  ++   R  YD    
Sbjct: 292 QEMVDLAD-PLPMVVAQFQDWLRTEVYPLCRMWARHYGPNHLSHNLKSEQRRFVYDELTD 350

Query: 121 SWDNGNSRWDLLDVM----RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +     S   +L +       +  F  +        D               I H  +H 
Sbjct: 351 AAKANVSAEAMLCMATDGPWDMRRFMHECSVLRDGVDFPPV-----CYRYINIRHSYSHH 405

Query: 177 AKADVYATLALVWLIREKKPKLFEYLY-DYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
            K        ++  +             D RN  ++   +  +    + HVS +  A R 
Sbjct: 406 FKCRQVRLTHMLKQMSMSFEGRRHSGIDDTRNIARVLAELFARGYR-VHHVSTIKYAHRG 464

Query: 236 NTALIA 241
           ++ L++
Sbjct: 465 DSFLVS 470


>gi|312868467|ref|ZP_07728667.1| DNA polymerase III, epsilon subunit [Streptococcus parasanguinis
           F0405]
 gi|311096212|gb|EFQ54456.1| DNA polymerase III, epsilon subunit [Streptococcus parasanguinis
           F0405]
          Length = 197

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +      +  Q + VR     ++++  + +      D         +
Sbjct: 5   EDYIAFDLE---FNQYEGAYQIIQVSAVRF-TDGKEVDHYDSY---VYTDKPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      +E +       F       +IGYN  + D          +  D Y  
Sbjct: 58  TGITQDKIQNAPQLE-QVLSEFKTFVGDRP--LIGYNAQKSDLPILL-ENGLDLEDQYA- 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+ D               PS   G  + +L  +A   G+    +HD+  D
Sbjct: 113 --------VDVFDEAFERR---------PSDLHGIKNLQLHTVAEFLGVA-GKSHDSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTALVYEQFLEFDQ 170


>gi|167586566|ref|ZP_02378954.1| oligoribonuclease [Burkholderia ubonensis Bu]
          Length = 206

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   E 
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEI 51


>gi|256371657|ref|YP_003109481.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008241|gb|ACU53808.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 188

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 8/114 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPADDYLPDPEAVFITG 62
               D E  G D       + A +  D + E +      V      +  + +P  V +  
Sbjct: 2   LAWMDLEMTGLDPERCVILEIAAIVTDDELETVAELGPLVLHATDEELAVMEPVVVQMHS 61

Query: 63  ITP--QKALRDGVVEAEFSRRIHQFFS----VPNTCIIGYNNIRFDDYYSRNIF 110
                +   R  +   E    +  F       P+   +  N+I  D  +     
Sbjct: 62  ANHLLEDVRRASLTIDEAESTVLAFLKAHLPDPHQVPLCGNSIGTDRRFLARHM 115


>gi|90410853|ref|ZP_01218868.1| ribonuclease T [Photobacterium profundum 3TCK]
 gi|90328484|gb|EAS44782.1| ribonuclease T [Photobacterium profundum 3TCK]
          Length = 223

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 59/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D        ST  F   P +  +   EA+   G
Sbjct: 20  VVIDVETAGFNSKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGAVLHKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVSEETALKEIYKQIRKEQKAADCSRAIMVAHNANFDHSFVMEASERARL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                   N    +   D            +             L       G+   N  
Sbjct: 140 K------RNPFHPFATFDTAALSGLAFGQTV-------------LAKACKTAGVAFDNKE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 181 AHSALYDTERTAELFCEIVNK 201


>gi|125973027|ref|YP_001036937.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           thermocellum ATCC 27405]
 gi|256004824|ref|ZP_05429799.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum DSM 2360]
 gi|281417237|ref|ZP_06248257.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum JW20]
 gi|125713252|gb|ABN51744.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           thermocellum ATCC 27405]
 gi|255991274|gb|EEU01381.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum DSM 2360]
 gi|281408639|gb|EFB38897.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum JW20]
 gi|316940738|gb|ADU74772.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           thermocellum DSM 1313]
          Length = 215

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 57/209 (27%), Gaps = 25/209 (11%)

Query: 4   HFVIYDYETFGRDVAL---DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++++YD E   +       +   +   ++++   ++I     F  KP             
Sbjct: 2   NYIVYDLELNSKPFKSSIPNEIIEIGAIKLNENLQEIGMFSSFI-KPKYFKKLFSVVKQK 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T IT ++          F   I QF        +  +    D          N       
Sbjct: 61  TKITQEQINSADS----FRNVIKQFIRWIGDDYLLISWGHDDVLNLILNCKFNRI----- 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKA 179
                  + D L     I          PS       + L++     G+E     H A  
Sbjct: 112 -------KIDWLKRNIDIQKQFSAIYHLPSGQ----RYSLENALALIGVEIDENLHRALT 160

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK 208
           D   T  +   I +K           ++K
Sbjct: 161 DAQYTAKIFKSIFDKLDLEVYNTVHIKDK 189


>gi|313892759|ref|ZP_07826340.1| exonuclease [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442690|gb|EFR61101.1| exonuclease [Veillonella sp. oral taxon 158 str. F0412]
          Length = 327

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 36/220 (16%)

Query: 4   HFVIYDYE-----TFGRD-------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           +++++D E     +                  Q   V+++ + + ++   +F       Y
Sbjct: 2   NYIVFDLEWNQPYSNDISFMKRTKMPLTGEIIQIGAVKLNDEMDIVDHFTMF---IKPQY 58

Query: 52  LP--DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           LP        +TGIT ++    GV      +      +      +  +    D    R  
Sbjct: 59  LPRMHKHVRELTGITSREL-DHGVPFKTAMQHFQ---NWCGDEYMLLSWGSDDILILREN 114

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
              +   +  +                          ++ +    + +  ++DL      
Sbjct: 115 LMLHKMKALSYDQ-------------WVDAQMIYAYQRYGTNQQYSVAHAMEDL--NIST 159

Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
           EH++AH+A  D   T  +   +   +  L        + N
Sbjct: 160 EHLSAHNALHDAVFTARICQKLDIPQGILHYDQIRKESSN 199


>gi|256824739|ref|YP_003148699.1| oligoribonuclease (3'->5' exoribonuclease) [Kytococcus sedentarius
           DSM 20547]
 gi|256688132|gb|ACV05934.1| oligoribonuclease (3'->5' exoribonuclease) [Kytococcus sedentarius
           DSM 20547]
          Length = 223

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 13/128 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYL--PDPEAVF 59
           +  V  D E  G +   D   + A +  D +   +        +P D   L   +P    
Sbjct: 27  DRIVWIDCEMTGLEP-TDVLVEIAALVTDFELNVLGEGVQVVIRPDDLGALEGLNPVVQK 85

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112
           +    G+  +  ++ GV  AE  R++ ++            +  N+I  D  +       
Sbjct: 86  MHTASGLLEE--IQHGVSAAEAERQVLEYVRQWVPVAGKAPLAGNSIATDRRFLAAEMPE 143

Query: 113 NFYDSYRW 120
                +  
Sbjct: 144 LDGYLHYR 151


>gi|153823922|ref|ZP_01976589.1| ribonuclease T [Vibrio cholerae B33]
 gi|126518562|gb|EAZ75785.1| ribonuclease T [Vibrio cholerae B33]
          Length = 227

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 23  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 82

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 83  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 142

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 143 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 183

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 184 AHSALYDTQKTAELFCTIVNQ 204


>gi|66768743|ref|YP_243505.1| hypothetical protein XC_2435 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|66574075|gb|AAY49485.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 185

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 61/202 (30%), Gaps = 35/202 (17%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST-EVFFCKPADDYL-PDP 55
           M +    F+  D ET G    +                 IE+  + + C+        DP
Sbjct: 1   MNDKQEVFISVDVETAGPIPGIYSLLSIGA-------CVIENPVQTYACELKPTTTQADP 53

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFF-----SVPNTCIIGYNNIRFDDYYSRNIF 110
            A+ +TG++ ++  R+G+      R    +      S      +G+N   FD  +    F
Sbjct: 54  AALEVTGLSLERLAREGLAPEVAMREFRTWVLGVCESKGEPVFVGFNA-AFDWSFINYYF 112

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
           +R   D        G S  D+  +             W              +A +    
Sbjct: 113 HRYLGD-----NPFGFSALDIKSL-----YMGAVQCAWHDTRS-------SQMAKSLQPH 155

Query: 171 HVNAHDAKADVYATLALVWLIR 192
               HDA  D      L   +R
Sbjct: 156 LAGNHDAMQDALYQAELFRCVR 177


>gi|163800755|ref|ZP_02194655.1| hypothetical protein 1103602000593_AND4_00793 [Vibrio sp. AND4]
 gi|159175104|gb|EDP59901.1| hypothetical protein AND4_00793 [Vibrio sp. AND4]
          Length = 176

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 20/148 (13%)

Query: 3   NHFVIYDYET----------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           N  V +D E            G         +     +D    +I     ++ KP  D +
Sbjct: 4   NRIVCFDLEMCCWNENGVGRTG------EIIEVGLAELDLSKGEIVKRAQYYVKPEHDEV 57

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +TGITP+K  + G    E  + + + F   N     +     DD        +
Sbjct: 58  -SLFCAELTGITPRKIEKQGRPLEEVLKSMLKNFGGRNKIYASW---GRDDVILLEECQQ 113

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
              D+    + N  + + + + ++    
Sbjct: 114 KGIDAPFTEFINLATLYRIQNRLKDKRI 141


>gi|118464888|ref|YP_880896.1| oligoribonuclease [Mycobacterium avium 104]
 gi|254774490|ref|ZP_05216006.1| oligoribonuclease [Mycobacterium avium subsp. avium ATCC 25291]
 gi|166216267|sp|A0QDA8|ORN_MYCA1 RecName: Full=Oligoribonuclease
 gi|118166175|gb|ABK67072.1| oligoribonuclease [Mycobacterium avium 104]
          Length = 215

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 42/155 (27%), Gaps = 20/155 (12%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M +  V  D E  G D+  D+  + A +  D +   +          ADD         +
Sbjct: 1   MRDELVWIDCEMTGLDLGSDKLIEIAALVTDAELNVLGDGVDVVIH-ADDAALAAMGEVV 59

Query: 61  TGITPQKALRDGVV-------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
           T    +   R G++             E      I      P T  +  N+I  D  +  
Sbjct: 60  T----EMHSRSGLIDEVKASTVDLATAEEMVLDYIRTHVKAPKTAPLAGNSIATDRAFIV 115

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
                   DSY        S    L        + 
Sbjct: 116 R--DMPALDSYLHYRMIDVSSIKELCRRWYPRIYF 148


>gi|269977446|ref|ZP_06184418.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
 gi|269934362|gb|EEZ90924.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
          Length = 303

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFI 60
              FV  D+ET   +           V  D + +  +S      +P  +    +P  V++
Sbjct: 1   MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLL-RPHPEVDYFNPANVWV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
            GIT +         ++ + ++  F        I  +N+ FD
Sbjct: 58  HGITSEDVQDAPQ-WSDIADQVMTFI---GDRPIVAHNMAFD 95


>gi|288940627|ref|YP_003442867.1| Exonuclease RNase T and DNA polymerase III [Allochromatium
          vinosum DSM 180]
 gi|288895999|gb|ADC61835.1| Exonuclease RNase T and DNA polymerase III [Allochromatium
          vinosum DSM 180]
          Length = 187

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 1  MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          M+    + +  D E  G D   DR  + A +  D Q   +  
Sbjct: 6  MSKSEHNLIWIDLEMTGLDPDHDRILEIATLITDSQLRVLAE 47


>gi|87121900|ref|ZP_01077785.1| oligoribonuclease [Marinomonas sp. MED121]
 gi|86162698|gb|EAQ63978.1| oligoribonuclease [Marinomonas sp. MED121]
          Length = 183

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 13/38 (34%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
            + +  D E  G D   +   + A +  D+    +  
Sbjct: 5  KENLIWIDLEMTGLDPEKNTIIEIATIVTDKHLNVLSE 42


>gi|306819092|ref|ZP_07452806.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
 gi|304648068|gb|EFM45379.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus
           mulieris ATCC 35239]
          Length = 305

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFI 60
              FV  D+ET   +           V  D + +  +S      +P  +    +P  V++
Sbjct: 3   MREFVAIDFET--ANEQRRSACAVGLVSFDGEGKLSDSYYKLL-RPHPEVDYFNPANVWV 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
            GIT +         ++ + ++  F        I  +N+ FD
Sbjct: 60  HGITSEDVQDAPQ-WSDIADQVMTFI---GDRPIVAHNMAFD 97


>gi|146300607|ref|YP_001195198.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
 gi|146155025|gb|ABQ05879.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
          Length = 198

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 27/182 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + FV+   ET G +   D          +D      E+ E          L   + +  
Sbjct: 27  PSKFVVLSTETSGLNPNKDVILSLGAFSVIDDSIIIKENFEA--------VLLQYKFLED 78

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G++ +  +   + +   +  +  F +     ++  ++I FD         R      + 
Sbjct: 79  NGLSNEFIIESKMTKMPEAEALEAFINFLGNAVLVGHHINFDIEMLNAALERLDCGRLKN 138

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                              A   D +     D     F L DL     I   + + +  D
Sbjct: 139 E------------------ALDIDVMYRKLTDINDKQFSLNDLCEIYKIPKSDRNSSAED 180

Query: 181 VY 182
            Y
Sbjct: 181 AY 182


>gi|76787294|ref|YP_330370.1| DNA polymerase III subunit epsilon [Streptococcus agalactiae A909]
 gi|77406198|ref|ZP_00783268.1| exonuclease [Streptococcus agalactiae H36B]
 gi|77411632|ref|ZP_00787973.1| exonuclease [Streptococcus agalactiae CJB111]
 gi|76562351|gb|ABA44935.1| exonuclease, putative [Streptococcus agalactiae A909]
 gi|77162349|gb|EAO73319.1| exonuclease [Streptococcus agalactiae CJB111]
 gi|77175192|gb|EAO77991.1| exonuclease [Streptococcus agalactiae H36B]
          Length = 195

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 32/198 (16%)

Query: 5   FVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +D E  T G         Q + V+     ++I   + +                +TG
Sbjct: 7   YIAFDLEFNTVG---EHSHIIQVSSVKY-SNHQEIALFDTY---VHTKVPLQSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +  +    +E         F    +T +IGYN  + D          N  D      
Sbjct: 60  ITARDIIGAPKIET-VLTDFQSFV--GDTPLIGYNGHKSDLPLLVE----NGLDLTSQYQ 112

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  DL D      +   +GI          + KL  +A   GI+   AH++  D  
Sbjct: 113 ------VDLYDEAFVRRSTDLNGI---------VNLKLTTVADFLGIK-GKAHNSLEDAR 156

Query: 183 ATLALVWLIREKKPKLFE 200
            T  +     +       
Sbjct: 157 MTARVYEKFLDLDENKIY 174


>gi|322376854|ref|ZP_08051347.1| exonuclease [Streptococcus sp. M334]
 gi|321282661|gb|EFX59668.1| exonuclease [Streptococcus sp. M334]
          Length = 196

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R  ++I++ + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGQEIDAYDSY---VHTSVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +  +   +F    +  ++GYN  + D     +            
Sbjct: 58  TGITAETLKDAPPVE-KVIKDFQEFV--GSLPMVGYNAAKSDLPILADHGLDY------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYESFLESDQ 170


>gi|300859054|ref|YP_003784037.1| hypothetical protein cpfrc_01637 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686508|gb|ADK29430.1| hypothetical protein cpfrc_01637 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206756|gb|ADL11098.1| Oligoribonuclease [Corynebacterium pseudotuberculosis C231]
 gi|302331309|gb|ADL21503.1| Oligoribonuclease [Corynebacterium pseudotuberculosis 1002]
 gi|308277000|gb|ADO26899.1| Oligoribonuclease [Corynebacterium pseudotuberculosis I19]
          Length = 219

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 10/119 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D       + A +  D     +           D  L   D     +
Sbjct: 19  DRLVWIDLEMTGLDTHRHVIVEVAALITDADLNILGEGVDLVVHATDAQLAEMDDYVTAM 78

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112
               G+T Q+     V   E    + +  +      +   +  N+I  D  +      R
Sbjct: 79  HENSGLT-QEIRSSTVSIEEAEDAVLELIAKHCDPQHPAPLAGNSIATDRSFINAYMPR 136


>gi|307705111|ref|ZP_07641989.1| DNA polymerase III, epsilon chain [Streptococcus mitis SK597]
 gi|307621335|gb|EFO00394.1| DNA polymerase III, epsilon chain [Streptococcus mitis SK597]
          Length = 196

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R  ++I++ + +      +         +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGQEIDAYDSY---VHTNVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +  +   +F       ++GYN ++ D                  
Sbjct: 58  TGITAETLKDAPPVE-KVIKDFQEFVGSLP--MVGYNAVKSDLPILAEHGLDY------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYESFLESDQ 170


>gi|50084341|ref|YP_045851.1| ribonuclease T [Acinetobacter sp. ADP1]
 gi|49530317|emb|CAG68029.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter sp. ADP1]
          Length = 221

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 57/205 (27%), Gaps = 31/205 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A + +   ++       +      P +    D  ++   G
Sbjct: 25  VVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLDRRSLDFIG 84

Query: 63  ITP------QKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P        A  +        + IH+          ++  +N  FD  + +    R  
Sbjct: 85  IDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQAAIART- 143

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172
                    N    + + D +          +             L    +  GI+    
Sbjct: 144 ----STKNQNPFHSFSVFDTVTLSAVMFGQTV-------------LAKACIQAGIDFDGK 186

Query: 173 NAHDAKADVYATLALVWLIREKKPK 197
            AH A  D   T  L   I  K   
Sbjct: 187 EAHSALYDTQKTAELFCYILNKLSP 211


>gi|89073343|ref|ZP_01159867.1| ribonuclease T [Photobacterium sp. SKA34]
 gi|89050830|gb|EAR56304.1| ribonuclease T [Photobacterium sp. SKA34]
          Length = 221

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 58/201 (28%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D        +T  F   P +  +   EA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGAILHKEALDFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        S  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                   N    +   D            +             L        I   N  
Sbjct: 140 K------RNPFHPFATFDTAALSGLAFGQTV-------------LAKACQTANIPFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 181 AHSALYDTERTAELFCEIVNK 201


>gi|326331153|ref|ZP_08197449.1| oligoribonuclease [Nocardioidaceae bacterium Broad-1]
 gi|325951048|gb|EGD43092.1| oligoribonuclease [Nocardioidaceae bacterium Broad-1]
          Length = 222

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 19/118 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE---- 56
           +    V  D E  G  +  D   + A +  D     +        KP  + L   +    
Sbjct: 8   LNERLVWIDCEMTGLSLENDALIEVAALVTDFDLNVLGDGVDIIIKPPAEALEQMDDFVR 67

Query: 57  ------AVFI---TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
                  + +    G+T ++A      E +    + +     +   +G N +  D  +
Sbjct: 68  DMHTKSGLLVELENGVTMREA------EEQVLAYVWEHCGKDSRPPLGGNTVATDRNF 119


>gi|300782107|ref|YP_003762398.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
 gi|299791621|gb|ADJ41996.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
          Length = 461

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 26/105 (24%), Gaps = 9/105 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D  T G      R  + A VRV                        P    + GIT
Sbjct: 20  FTVVDIRTTGL--RSGRVVELAAVRVSADGSFGGELTTL---VDPGPGVPPGPALVHGIT 74

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
             +         E       F  +    ++  +++     +    
Sbjct: 75  RGELDGAP-SFGEVLG---PFLDLCAGSVLVAHDLASAGAFLDRE 115


>gi|281343118|gb|EFB18702.1| hypothetical protein PANDA_015684 [Ailuropoda melanoleuca]
          Length = 334

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 63/208 (30%), Gaps = 29/208 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDR---------------QWEKIESTEVFFCK 46
               +  D E  G   +  +  +   + V R                       +     
Sbjct: 31  MQTLIFLDLEATGLPSSQPKVTELCLLAVHRCALESSPTPEGQPPTVPPPPRVVDKLSLC 90

Query: 47  PADDYLPDPEAVFITGITPQKALRDG--VVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102
            A      PEA  ITG++       G    +A+ +  +  F        C++ +N  R+D
Sbjct: 91  VAPGKACSPEASKITGLSTAVLAAHGRQRFDADLANLLQAFLQRQPQPWCLVAHNGNRYD 150

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
               +             S  +     D +  ++     + +    PS      S+ L  
Sbjct: 151 FPLLQAELAVLGL----ASVLDSAFCVDSIAALK-----ALEHADSPSEHGPRKSYSLGS 201

Query: 163 L-ALANGIEHVNAHDAKADVYATLALVW 189
           +     G    ++H A++DV A L++  
Sbjct: 202 IYTRLYGQAPPDSHMAESDVLALLSICQ 229


>gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str.
           657]
 gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Ba4 str. 657]
          Length = 309

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  + +E       KP +     P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGKIVEKVHYLI-KPKEMRFM-PINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P     + +   +   +I  +F+     ++  +N  FD    R+             ++
Sbjct: 57  RPHMVKDE-LEFDKIWEKIKGYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                ++ +  M+    F                 +L  +    G +    HDA AD  A
Sbjct: 104 IKMPSFEYICTMKLSKNFYSSIDN----------ARLNTVNNFLGYKF-QHHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|327483724|gb|AEA78131.1| Ribonuclease T [Vibrio cholerae LMA3894-4]
          Length = 224

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 80  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGVEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201


>gi|225438656|ref|XP_002277040.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082445|emb|CBI21450.3| unnamed protein product [Vitis vinifera]
          Length = 303

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 31/193 (16%)

Query: 5   FVIYDYETFGRDVALDR--PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAV--- 58
            V +D ET   + A  R    +F  + V  R+  ++ES            L    A+   
Sbjct: 15  IVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTL---IRPGDL-SAVALRSG 70

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
              GIT +        E E + +I    +       G+N  RFD      +  +  +   
Sbjct: 71  RSDGITREVVAGAPGFE-EVADQIFSILN--GRVWAGHNIQRFD-----CVRIKEAFAEI 122

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
             +        D L V+                   A + K+  LA   G+     H + 
Sbjct: 123 GRAAPVPVGMIDSLGVL------------TEKFGRRAGNMKMATLATYFGLGQQK-HRSL 169

Query: 179 ADVYATLALVWLI 191
            DV   L ++   
Sbjct: 170 DDVRMNLEVLKHC 182


>gi|147791948|emb|CAN61478.1| hypothetical protein VITISV_013817 [Vitis vinifera]
          Length = 293

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 31/193 (16%)

Query: 5   FVIYDYETFGRDVALDR--PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAV--- 58
            V +D ET   + A  R    +F  + V  R+  ++ES            L    A+   
Sbjct: 48  IVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTL---IRPGDL-SAVALRSG 103

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
              GIT +        E E + +I    +       G+N  RFD      +  +  +   
Sbjct: 104 RSDGITREVVAGAPGFE-EVADQIFSILN--GRVWAGHNIQRFD-----CVRIKEAFAEI 155

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
             +        D L V+                   A + K+  LA   G+     H + 
Sbjct: 156 GRAAPVPVGMIDSLGVL------------TEKFGRRAGNMKMATLATYFGLGQQK-HRSL 202

Query: 179 ADVYATLALVWLI 191
            DV   L ++   
Sbjct: 203 DDVRMNLEVLKHC 215


>gi|301781328|ref|XP_002926073.1| PREDICTED: three prime repair exonuclease 1-like [Ailuropoda
           melanoleuca]
          Length = 338

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 65/208 (31%), Gaps = 29/208 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDR---------QWE------KIESTEVFFCK 46
               +  D E  G   +  +  +   + V R         + +           +     
Sbjct: 35  MQTLIFLDLEATGLPSSQPKVTELCLLAVHRCALESSPTPEGQPPTVPPPPRVVDKLSLC 94

Query: 47  PADDYLPDPEAVFITGITPQKALRDG--VVEAEFSRRIHQFFSV--PNTCIIGYNNIRFD 102
            A      PEA  ITG++       G    +A+ +  +  F        C++ +N  R+D
Sbjct: 95  VAPGKACSPEASKITGLSTAVLAAHGRQRFDADLANLLQAFLQRQPQPWCLVAHNGNRYD 154

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
               +             S  +     D +  ++     + +    PS      S+ L  
Sbjct: 155 FPLLQAELAVLGL----ASVLDSAFCVDSIAALK-----ALEHADSPSEHGPRKSYSLGS 205

Query: 163 L-ALANGIEHVNAHDAKADVYATLALVW 189
           +     G    ++H A++DV A L++  
Sbjct: 206 IYTRLYGQAPPDSHMAESDVLALLSICQ 233


>gi|302758050|ref|XP_002962448.1| hypothetical protein SELMODRAFT_141141 [Selaginella moellendorffii]
 gi|300169309|gb|EFJ35911.1| hypothetical protein SELMODRAFT_141141 [Selaginella moellendorffii]
          Length = 236

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 15/115 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G DV  DR  + A +  D +           I  ++       +       
Sbjct: 60  LVWIDLEMTGLDVCKDRILEIACIITDGKLTKSIEGPNLVIHQSDEILKGMGEWCQTHHA 119

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108
           A  +T    ++     V EA     + +F           +  N++  D  + R 
Sbjct: 120 ASGLT----ERVQNSKVTEAHAEMLVLKFVQKYTIAGYAQLAGNSVYNDLNFLRK 170


>gi|254519816|ref|ZP_05131872.1| exonuclease [Clostridium sp. 7_2_43FAA]
 gi|226913565|gb|EEH98766.1| exonuclease [Clostridium sp. 7_2_43FAA]
          Length = 209

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 21/178 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFI 60
             + +D ET           Q + + +D   +    I     F          D  A  I
Sbjct: 2   KLLFFDTETTSIKPGN--ICQLSYIVIDASVKPQKTIGKNFFFTV-----DSMDEGAEAI 54

Query: 61  TGITPQKALRDGVVE-AEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            G + +K     + E  EF   +H+F     +   I  +N++FD  + ++   + +    
Sbjct: 55  HGFSLEKLYD--LSEGKEFLDCVHEFMPDFFDADFIIGHNVQFDIKFLKHELQQLWEAGL 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
             +     + +  +       A+       PS      + KL ++     I      +
Sbjct: 113 IDTTWEPKNTFCTM-------AYYKSPCNLPSPSGNIKNPKLAEVIDFLQISEDQITN 163


>gi|302189797|ref|ZP_07266470.1| oligoribonuclease [Pseudomonas syringae pv. syringae 642]
          Length = 178

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPALE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|221213533|ref|ZP_03586507.1| oligoribonuclease [Burkholderia multivorans CGD1]
 gi|221166322|gb|EED98794.1| oligoribonuclease [Burkholderia multivorans CGD1]
          Length = 211

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   E 
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEI 51


>gi|118473234|ref|YP_888984.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155]
 gi|118174521|gb|ABK75417.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155]
          Length = 216

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 52/202 (25%), Gaps = 36/202 (17%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFI 60
           +  V  D E  G D+  DR  + A +  D     +           D+ L         +
Sbjct: 10  DELVWIDCEMTGLDLKSDRLIEIAVLVTDADLNILGDGLDVVIHADDESLSSMVDVVKQM 69

Query: 61  T---GITPQKALRDGV----VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
               G+T ++  R  V     E      I        T  +  N+I  D  +      + 
Sbjct: 70  HARSGLT-EEVRRSTVDLATAEEMVLDYIRGHVKQAKTAPLAGNSIATDRGFIARDMPK- 127

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D Y        S    L        +                            E   
Sbjct: 128 -LDDYLHYRMIDVSSIKELCRRWYPRIYFG------------------------QPEKGL 162

Query: 174 AHDAKADVYATLALVWLIREKK 195
           AH A AD++ ++  +   R   
Sbjct: 163 AHRALADIHESIRELKYYRATA 184


>gi|148543638|ref|YP_001271008.1| exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|184153052|ref|YP_001841393.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227363391|ref|ZP_03847517.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227545077|ref|ZP_03975126.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300909253|ref|ZP_07126714.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|325682001|ref|ZP_08161519.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
 gi|148530672|gb|ABQ82671.1| Exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|183224396|dbj|BAG24913.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227071580|gb|EEI09877.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227184926|gb|EEI64997.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300893118|gb|EFK86477.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|324978645|gb|EGC15594.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
          Length = 179

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 30/198 (15%)

Query: 2   TNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             +F+  D+ET  G+  +         + + R  +  +                     I
Sbjct: 1   MMNFIAMDFETANGKRYSACSL----ALTIVRNGQIADEFYTL---INPHTKFFWRNTQI 53

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +          E    I+QF++ P+  +I +NN         N   RN  + Y  
Sbjct: 54  HGIHERDVQNAP-DFPEVWEHINQFYT-PDKLVIAHNNRFD------NSVLRNTLEHYNI 105

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                   +  LD + +                G T++KL  +  A  I+  + H+A  D
Sbjct: 106 E----VPAYQTLDTVASSRQL----------IPGLTNYKLNTVCDALNIDLHHHHNALDD 151

Query: 181 VYATLALVWLIREKKPKL 198
             A   ++    +     
Sbjct: 152 AQACANILLYQSKHFTPQ 169


>gi|294792957|ref|ZP_06758103.1| exonuclease [Veillonella sp. 6_1_27]
 gi|294455902|gb|EFG24266.1| exonuclease [Veillonella sp. 6_1_27]
          Length = 209

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   +   +     A + V +  +  +               D E + I 
Sbjct: 1   MLDFVALDFET--ANKFKNSACSLAVITV-KDGQITKKAYSLIK--PPFMSFDDECIEIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+  L +     +    I++  +     I+  +N +FD         R   D Y+  
Sbjct: 56  GIQPKDVLHE-KTFDQLWNAIYE--NHLKGNIMVAHNAKFDMNVL-----RATLDYYKIP 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W       D    ++   A  PD +            KL  +A   G+E    H A  D 
Sbjct: 108 W----PELDYACTVKLSRAVWPDLVN----------HKLNTMAAYIGVEF-KHHYALDDA 152

Query: 182 YATLAL 187
                +
Sbjct: 153 ETCAKV 158


>gi|56460284|ref|YP_155565.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR]
 gi|56179294|gb|AAV82016.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR]
          Length = 215

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 52/186 (27%), Gaps = 21/186 (11%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--STEVFFCKPADDYLPDPEAVFITG 62
           +V  D E+ G D    +    A + +      +      VF      +    P    I G
Sbjct: 27  YVALDIESTGLDPKKHQILSIAWMSIHPPVMHLGNAQYHVFAHGQELELGQSPT---IHG 83

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q  L     +  F+          N  ++  ++   D  + ++I  +          
Sbjct: 84  LTRQDFLHSSEPKQTFAM----LSRALNDAVLVCHHKGMDWRFLKHIEAQYGIP------ 133

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 +  L +   +        + P +        L        +   +AH A  D  
Sbjct: 134 ------FKPLAIFDTLAFEKHKLERNPHQPIYGGQLALSACRKRYNLPDYHAHHALTDTV 187

Query: 183 ATLALV 188
           A   L 
Sbjct: 188 ACAELF 193


>gi|307191510|gb|EFN75025.1| Three prime repair exonuclease 2 [Camponotus floridanus]
          Length = 324

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 11/121 (9%)

Query: 3   NHFVIYDYETFGR--DVALDRPAQFAGVRV------DRQWEKIESTEVFFCKP-ADDYLP 53
             F+ +D ET G   +  + R  + A + V      +     +         P     + 
Sbjct: 4   QTFIFFDLETTGLIQEKLMPRITEIALIAVGRESICNSNKASLPRVLQKLILPINPQKII 63

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFY 111
            P   +IT +   + L     E E    I +F     P  C   +N   F          
Sbjct: 64  PPNVEYITKLFNDEMLLLQSFECEVYELIMRFLQRLTPPICFAAHNGKSFYYPIFFQELE 123

Query: 112 R 112
           R
Sbjct: 124 R 124


>gi|297578613|ref|ZP_06940541.1| ribonuclease T [Vibrio cholerae RC385]
 gi|297536207|gb|EFH75040.1| ribonuclease T [Vibrio cholerae RC385]
          Length = 249

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 39  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 99  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 159 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 199

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 200 AHSALYDTQKTAELFCTIVNQ 220


>gi|302923273|ref|XP_003053640.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734581|gb|EEU47927.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 216

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 34/128 (26%), Gaps = 11/128 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKP-ADDYLPDPEAVF 59
           +  V  D E  G D   D   +   +      E ++          P +     D     
Sbjct: 18  DPLVWIDCEMTGLDQDNDEILEIYCIITTGNLEILDEEGFHAIIHWPQSRLDQMDDWCTK 77

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQ----FFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                G+T          E E +  ++     F       ++  N++  D  + R   YR
Sbjct: 78  THADSGLTAAVLASTTTPE-EAASALYDYVTRFIPDRRRGLLAGNSVHCDRAFLRREPYR 136

Query: 113 NFYDSYRW 120
                   
Sbjct: 137 KVMKHLHH 144


>gi|190015910|ref|YP_001965118.1| putative exonuclease [Rhodococcus sp. NS1]
 gi|114796750|gb|ABI79343.1| putative exonuclease [Rhodococcus sp. NS1]
          Length = 238

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 14/112 (12%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           I D ET G D       + A +  D    E + +T V  C P      +P AV + G+T 
Sbjct: 53  IVDVETSGLD---GSIIEIAVI--DAATGEVLLNTLV-DCSP---VEIEPGAVEVHGLTA 103

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                     +E    +       N  ++ YN          +   R   D 
Sbjct: 104 TDLAGAPR-WSEVFPELAAATK--NRVVLAYNAKFDRGRVLHD-CRREGIDP 151


>gi|330876090|gb|EGH10239.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330964631|gb|EGH64891.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 180

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 53/192 (27%), Gaps = 23/192 (11%)

Query: 2   TNHFVIYDYE-TF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E T    G  VA     +     V++   +++  E  F +PA   L     
Sbjct: 1   MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T I  Q  +           +  ++ S     ++G+                  +  
Sbjct: 60  KELTHI-NQSNIDSAAPLTTVWPQFERWLSHHRARVVGW----------------ASWGD 102

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
           Y         R   L    +         ++           L       G++     H 
Sbjct: 103 YDRQQLEEEWRHHQLGSALSSMPHVNLKQRFAQARQLQKPVGLNSALQLAGMQFSGQQHR 162

Query: 177 AKADVYATLALV 188
           A  D   T  L+
Sbjct: 163 ALVDARNTARLL 174


>gi|321463015|gb|EFX74034.1| hypothetical protein DAPPUDRAFT_16784 [Daphnia pulex]
          Length = 141

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 10/123 (8%)

Query: 4   HFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIEST-------EVFFCKPADDYLPDP 55
             V +D ET G       +  + +   V+R                          L DP
Sbjct: 1   SLVFFDLETTGLPAFHCPKITELSFCAVERHQFLNGQPKAMPRVTNRLNLCIYPSRLVDP 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRN 113
           EA   T +           + +    I+ F +      C+I +N   FD    R+   + 
Sbjct: 61  EATNKTKLDNYNLEHQSRFDEDVFNLIYSFLNRLKKPICLIAHNGYNFDFPILRSEIAKL 120

Query: 114 FYD 116
             +
Sbjct: 121 GKE 123


>gi|326527927|dbj|BAJ89015.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 259

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G D+  DR  + A +  D +           I  ++       +       
Sbjct: 71  LVWIDLEMTGLDIRKDRILEIACIITDGKLTKRIEGPDLVIRQSKECLDNMNEWCKTHHG 130

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP 89
           A  +T    ++  +  + E +  ++ H +    
Sbjct: 131 ASGLT----EQVQQSDISECDAEKQTHCYLQTC 159


>gi|295108760|emb|CBL22713.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Ruminococcus obeum A2-162]
          Length = 319

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 70/274 (25%), Gaps = 33/274 (12%)

Query: 4   HFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           +++++D E      G+  +  R      +   V+++ Q E ++  +    KP        
Sbjct: 2   NYIVFDLEWNQSPGGKKYSNSRLPFEIIEIGAVKMNEQREVLDVFQ-RLVKPQVYNWIHD 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +  +  +     GV   +    + +F        +       D    +        
Sbjct: 61  SIHEVIHVDYKDLAD-GVPFPQA---VEEFLDWCGEERVFCTWGNQDVMELQRNMKYYGL 116

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                      + +D   +    Y   P         D     K               H
Sbjct: 117 ---LKKIKGPVTYYDAQKIYGICYKEDPCRRSLEYAIDKMRLPK-----------AQEFH 162

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF----- 230
            A  D   T  +   +  +       +  Y+N    ++ I +       +VS  F     
Sbjct: 163 RALTDAKYTGEIFKRLDMQVVLANPSIDVYQNPKTRKEEIYLSYPNYDEYVSREFAEKEK 222

Query: 231 -GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMR 263
               R   +   PV   P  +      N S    
Sbjct: 223 VIKDREVASTRCPVCHLPAKRKIRWFMNNSRAYE 256


>gi|282849129|ref|ZP_06258514.1| DNA polymerase III subunit epsilon domain protein [Veillonella
           parvula ATCC 17745]
 gi|282580833|gb|EFB86231.1| DNA polymerase III subunit epsilon domain protein [Veillonella
           parvula ATCC 17745]
          Length = 209

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   +   +     A + V +  +  +               D E + I 
Sbjct: 1   MLDFVALDFET--ANKFKNSACSLAVITV-KDGQITKKAYSLIK--PPFMSFDDECIEIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+  L +     +    I++  +     I+  +N +FD         R   D Y+  
Sbjct: 56  GIQPKDVLHE-KTFDQLWNAIYE--NHLKGNIMVAHNAKFDMNVL-----RATLDYYKIP 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W       D    ++   A  PD +            KL  +A   G+E    H A  D 
Sbjct: 108 W----PELDYACTVKLSRAVWPDLVN----------HKLNTMAAYIGVEF-KHHYALDDA 152

Query: 182 YATLAL 187
                +
Sbjct: 153 ETCAKV 158


>gi|171057672|ref|YP_001790021.1| oligoribonuclease [Leptothrix cholodnii SP-6]
 gi|170775117|gb|ACB33256.1| Exonuclease RNase T and DNA polymerase III [Leptothrix cholodnii
           SP-6]
          Length = 187

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
           + +  D E  G D   DR  + A V  D Q        V     +D+ L   +A      
Sbjct: 13  NLIWIDMEMTGLDPMTDRVIEIAVVVTDAQLTVRVEGPVIAVHQSDEVLDRMDAWNRGTH 72

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G +   ++     + E +   ++ +F        T  +  N+I  D  +  N   R    
Sbjct: 73  GKSGLTERVKASTIGEDQAQDQMIEFLKQYVSKKTSPMCGNSICQDRRFMANYMPRLEEF 132

Query: 117 SYRW 120
            +  
Sbjct: 133 FHYR 136


>gi|90579159|ref|ZP_01234969.1| ribonuclease T [Vibrio angustum S14]
 gi|90439992|gb|EAS65173.1| ribonuclease T [Vibrio angustum S14]
          Length = 221

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 58/201 (28%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D        +T  F   P +  +   EA+   G
Sbjct: 20  VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGAILHKEALDFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        S  +  I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                   N    +   D            +             L        I   N  
Sbjct: 140 K------RNPFHPFATFDTAALSGLAFGQTV-------------LAKACQTANIPFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 181 AHSALYDTERTAELFCEIVNK 201


>gi|307822745|ref|ZP_07652976.1| Exonuclease RNase T and DNA polymerase III [Methylobacter
           tundripaludum SV96]
 gi|307736349|gb|EFO07195.1| Exonuclease RNase T and DNA polymerase III [Methylobacter
           tundripaludum SV96]
          Length = 181

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            +H +  D E  G D   D   + A +  D+    +    V     +D  L   D     
Sbjct: 5   PSHLIWIDLEMTGLDPDNDLIIEIATIITDKDLNILAQGPVLAVHQSDAALGAMDEWNQH 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    +     +   E  R+  +F       NT  I  N+I  D  +      +  
Sbjct: 65  HHGQSGLIARVKASTIDAEEAERQTIEFLKQWVPENTSPICGNSIGQDRRFLYRYMPKLE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 AYFHYR 130


>gi|172058850|ref|YP_001815310.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium
           sibiricum 255-15]
 gi|171991371|gb|ACB62293.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium
           sibiricum 255-15]
          Length = 190

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 51/205 (24%), Gaps = 28/205 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M  + +  D+ET   +        F    +                   +   D   + +
Sbjct: 1   MPPYTLAIDFET--ANRNSRSICAFGWSVLSEGRVVTSEQ----VLINPEEDFDAGNIRV 54

Query: 61  TGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            GI P        + EA  +  + +        ++  +N  FD    +    +       
Sbjct: 55  HGIRPSDVWDAPALPEAMEAHGLFKLIEKAE--LVIAHNAAFDMGALQKAVQKYDLYQMP 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                          ++      P             + KL  +A    +     HDAK 
Sbjct: 113 TFQYG--------CTVKLSRKLYPWL----------PNHKLNTMAEFLNVSF-KHHDAKE 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D Y    L+  + ++          
Sbjct: 154 DAYICALLLQDMFDRTNIEHPVELH 178


>gi|330939856|gb|EGH43089.1| oligoribonuclease [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330978958|gb|EGH78017.1| oligoribonuclease [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 178

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|330901691|gb|EGH33110.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 209

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 21/151 (13%)

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
            D   D  A+ + GIT +  +      AE +    +F       I   +N  FD  +  N
Sbjct: 2   PDRESDEGAIGVHGITNEFLVGKPR-FAEVADEFFEFIKGAQLII---HNAAFDVGFINN 57

Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
             +       R       S  D L + R  +    +               L  L    G
Sbjct: 58  E-FALMGSQDRADITQHCSVLDTLMMARERHPGQRN--------------SLDALCKRYG 102

Query: 169 IEHV--NAHDAKADVYATLALVWLIREKKPK 197
           +++     H A  D      +   +   +  
Sbjct: 103 VDNSGRELHGALLDSEILADVYLAMTGGQTS 133


>gi|255745763|ref|ZP_05419711.1| hypothetical protein VCH_002127 [Vibrio cholera CIRS 101]
 gi|262158958|ref|ZP_06030070.1| hypothetical protein VIG_002197 [Vibrio cholerae INDRE 91/1]
 gi|262169319|ref|ZP_06037011.1| hypothetical protein VIJ_002539 [Vibrio cholerae RC27]
 gi|262192375|ref|ZP_06050528.1| hypothetical protein VIH_002769 [Vibrio cholerae CT 5369-93]
 gi|255736838|gb|EET92235.1| hypothetical protein VCH_002127 [Vibrio cholera CIRS 101]
 gi|262022132|gb|EEY40841.1| hypothetical protein VIJ_002539 [Vibrio cholerae RC27]
 gi|262029143|gb|EEY47795.1| hypothetical protein VIG_002197 [Vibrio cholerae INDRE 91/1]
 gi|262031728|gb|EEY50313.1| hypothetical protein VIH_002769 [Vibrio cholerae CT 5369-93]
          Length = 156

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 10/129 (7%)

Query: 12  TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71
           T G         +     +D    +I     +F KP  D +       +TGITP+K  + 
Sbjct: 3   TTG------EIIEIGLAEIDLAAGEIVKRAQYFVKPEKDEI-SLFCAELTGITPRKIEKQ 55

Query: 72  GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131
           G   AE  + + + F   N     +     DD    N             + N  + + +
Sbjct: 56  GRPLAEVIQSMVKNFGGSNKIYASW---GRDDLILLNECREKGLSVPFQEFLNLATLYRI 112

Query: 132 LDVMRAIYA 140
              ++    
Sbjct: 113 QHRLKDKRI 121


>gi|85711864|ref|ZP_01042919.1| oligoribonuclease [Idiomarina baltica OS145]
 gi|85694261|gb|EAQ32204.1| oligoribonuclease [Idiomarina baltica OS145]
          Length = 183

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDY-LPDPEAVF 59
           +   +  D E  G +   D   + A +  D     +     +   +P  +    D   V 
Sbjct: 7   SQRLIWIDLEMTGLNPEYDHVIEVATIVTDADLNILAEGPTIAIHQPQSNLDKMDDWNVK 66

Query: 60  IT---GITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRN 113
                G+   +  +    E +  R   +F S    PNT  +  N+I  D  +        
Sbjct: 67  THTGSGL-VDRVKKSQYSEQDAVRETIEFLSHYVEPNTSPMCGNSICQDRRFLAQHMPEL 125

Query: 114 FYDSYRW 120
               +  
Sbjct: 126 EAFFHYR 132


>gi|327440671|dbj|BAK17036.1| DNA polymerase III, epsilon subunit [Solibacillus silvestris
           StLB046]
          Length = 353

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 56/210 (26%), Gaps = 31/210 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T  ++  D E            +   V+          T     +P      +     +T
Sbjct: 4   TKTYISIDIEAA-LIRGKQYIIEIGAVKWLPDGTT--ETFTQLIQPYKFKKLNAHIQKLT 60

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++ +        F     +F        +      FD         RN+  +    
Sbjct: 61  GITTEQLVDAPS----FKEAFTKFKRWCKQDYVFLTFGEFDRKVLEEELSRNYIKN---- 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                           +Y       ++   +       L  L    G+E+   H A AD 
Sbjct: 113 --------------DCLYPMIDFQQKYMIANGLKEQPSLGGLMAQLGLENETQHRALADA 158

Query: 182 YATLALV------WLIREKKPKLFEYLYDY 205
            + L++        +I +++   F  L   
Sbjct: 159 ASLLSIFVKVDGDKIIEQQQTNDFILLLTN 188


>gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum
           H04402 065]
          Length = 309

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  E +E           +    P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLIK--PKEMRFMPINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P     + +   +   +I  +F+     ++  +N  FD    ++             ++
Sbjct: 57  RPHMVKDE-LEFDKIWGKIKDYFNNN---LVIAHNASFDMSVLKSTLKL---------YN 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                ++ +  M+    F  +              +L  +    G +    HDA AD  A
Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTVNNFLGYKF-KHHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|152941094|gb|ABS44984.1| histone mRNA 3' end-specific exonuclease [Bos taurus]
          Length = 349

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  +      +  +++  +  +         + +   +         +    R 
Sbjct: 190 TGITQDQVDKAD-TFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRL 248

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 298


>gi|91202954|emb|CAJ72593.1| strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 204

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 58/217 (26%), Gaps = 30/217 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET   +             ++   + I     +  +P  +   DP + +I GI+ 
Sbjct: 4   VAIDFET--ANAKRSSVCSLGLAIIEE--QTIVKRTSWLIRP-PELYFDPFSTYIHGISA 58

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          +    I  F        +  +N  FD                       
Sbjct: 59  KDVEDKPE-FYQLWDEIFPFLE---GSYLVAHNASFDMSVLCC----------------- 97

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D+  +      +            G   + L  ++    IE    HDA+ D  A  
Sbjct: 98  --ILDVYKIPYPPLNYFCTLAIAKRVWPGLLGYALNKISRYLEIEF-KHHDAEEDAVACA 154

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
            ++     +           + K    K +   N TP
Sbjct: 155 KILLHAYNELGVNNLEELAKKIKLP-EKYLLPDNFTP 190


>gi|254471445|ref|ZP_05084847.1| exonuclease [Pseudovibrio sp. JE062]
 gi|211959591|gb|EEA94789.1| exonuclease [Pseudovibrio sp. JE062]
          Length = 248

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 69/217 (31%), Gaps = 32/217 (14%)

Query: 2   TNHFVIYDYE--TF-GRDVAL-------DRPA-QFAGVRV--DRQWEKIESTEVFFCKPA 48
               V++D E  T  G            D    Q   V++  +  +E I++ +V      
Sbjct: 37  MKTAVVFDCEFLTSEGAQRRFWCGPFDPDPVIAQIGAVKLSLEGSFELIDTIKVHINPVD 96

Query: 49  DD---YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
                Y  DP    +TGIT +    +G+   E + +++ F    +   + ++  + +   
Sbjct: 97  RYGDSYKLDPFFSKLTGITQEMIDSEGISLQEVNEQLNAF---ADGATL-WSWGKDELNM 152

Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
                Y                ++D    +        + I+    +D A  F+L+    
Sbjct: 153 MAISCYIAGIQP-----SIPAHQFDNACKLMLAAGMPYEDIKRTRSNDLADYFELEH--- 204

Query: 166 ANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
                 +  HDA  D  +   ++  +   K       
Sbjct: 205 ----PPLRGHDALDDALSVAYVIQHLLRNKRLSPAEF 237


>gi|220929605|ref|YP_002506514.1| exonuclease RNase T and DNA polymerase III [Clostridium
           cellulolyticum H10]
 gi|219999933|gb|ACL76534.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulolyticum H10]
          Length = 186

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 49/194 (25%), Gaps = 18/194 (9%)

Query: 5   FVIYDYETFGRDVA------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            +  D+E    D             +   V   +  ++I        KP  + L      
Sbjct: 2   LIFVDFEATCWDKNEKYKQPHAEIIEIGAVATGKDLKEIGKFSA-VVKPTIEPLLSDYCK 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TG++       G+         +Q+                D          + +   
Sbjct: 61  ELTGLSQTDVEN-GIEFNRAIDLFYQWIIQ---------YQDTDTPILYTWGNYDGFLLK 110

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDA 177
           R    + N   D L +++     +             +S  L       G ++    H +
Sbjct: 111 RNLRRHRNKNKDFLKIIQKGGVANLQEKFLEFTKLPCSSCSLTKALQIIGEDYRGIKHRS 170

Query: 178 KADVYATLALVWLI 191
             D    + L   +
Sbjct: 171 INDAANMIKLYKYL 184


>gi|88797304|ref|ZP_01112894.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297]
 gi|88780173|gb|EAR11358.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297]
          Length = 192

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 50/200 (25%), Gaps = 34/200 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------- 58
           ++ D E  G +   D       V +++   ++          A      P A+       
Sbjct: 18  LVLDLEMTGLNAQEDSIISAGWVVIEQGRIEL--------SLAGHQYFQPTAMMASDVSA 69

Query: 59  --FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              I  IT     + G     + +R++            +++   D  + +    R    
Sbjct: 70  SAHIHMITDHLLEQQGQPLGHWLQRLNGDLL---ADRWVFHHAPIDMAFLKMFSQRLDI- 125

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                         + D +        D        +      L      + +     H 
Sbjct: 126 --------VLPSVTIEDTVLLEQKRFSDL-----TLESQQQLSLTACRARHRLPAYRQHH 172

Query: 177 AKADVYATLALVWLIREKKP 196
           A +D  AT  L   +     
Sbjct: 173 ALSDALATAELYLALMTDSQ 192


>gi|84494356|ref|ZP_00993475.1| oligoribonuclease [Janibacter sp. HTCC2649]
 gi|84383849|gb|EAP99729.1| oligoribonuclease [Janibacter sp. HTCC2649]
          Length = 226

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 19/117 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----- 56
           T+  V  D E  G  +  D   + A +  D +   +        KP D+ L         
Sbjct: 13  TDRIVWIDCEMTGLSLENDALVEVAALVTDFELNILGDGVDVVIKPTDEALEQMGDFVRE 72

Query: 57  ----AVFIT----GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
               +  I     G+T ++A +           + ++   P    +G N +  D  +
Sbjct: 73  MHTSSGLINEFADGVTIEEAQQR------VLDYVREWVPEPRKAPLGGNTVATDRGF 123


>gi|322829251|gb|EFZ32718.1| hypothetical protein TCSYLVIO_929 [Trypanosoma cruzi]
          Length = 380

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 49/185 (26%), Gaps = 15/185 (8%)

Query: 8   YDYE-----TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +D E      FG D   +   +F            ++       P +      E   +T 
Sbjct: 79  FDLEFSGPPVFGPDGPTEDIIEFGFY-----SPAKDTVFSCLVNPTNGRRVSQEVTALTN 133

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDS-YRW 120
           IT +   ++G+   E   ++ +    P    + G  N      +   +   +        
Sbjct: 134 ITQEMLEKEGLPFPEAWEKVMETLMTPEPQELPGAENRLLVLSHGGKLADVSLIKWTLEA 193

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKA 179
                       D    I          P +     S+ L DL         + AH A  
Sbjct: 194 HGLELPPALVFGDTFHFIRDAHRRRPVTPDKHP--PSWALADLVQWLKIPPTLPAHRAGN 251

Query: 180 DVYAT 184
           D   T
Sbjct: 252 DAKMT 256


>gi|221102082|ref|XP_002161173.1| PREDICTED: similar to Oligoribonuclease, mitochondrial [Hydra
           magnipapillata]
          Length = 184

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 21/118 (17%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPA-------DDYLPDP- 55
            V  D E  G DV  D   + A +  D     I    ++   +P        D       
Sbjct: 9   LVWVDLEMTGLDVDKDHIIEMAVLITDSDLNIIAEGPDIIINQPESILQNMGDWCKVQHG 68

Query: 56  -----EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                +AV ++ +T ++       E E    + ++ +    C++  N +  D  + + 
Sbjct: 69  KSGLTKAVQVSRVTLKEC------EREMICFVSKYTNK-EKCLLAGNTVHVDKEFLKK 119


>gi|313893912|ref|ZP_07827478.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441476|gb|EFR59902.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 209

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   +   +     A + V +  +  +               D E + I 
Sbjct: 1   MLDFVALDFET--ANKFKNSACSLAVITV-KDGQITKKAYSLIK--PPFMSFDDECIEIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+  L +     +    I++  +     I+  +N +FD         R   D Y+  
Sbjct: 56  GIQPKDVLHE-KTFDQLWNAIYE--NHLKGNIMVAHNAKFDMNVL-----RATLDYYKIP 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W       D    ++   A  PD +            KL  +A   G+E    H A  D 
Sbjct: 108 W----PELDYACTVKLSRAVWPDLVN----------HKLNTMAAYMGVEF-KHHYALDDA 152

Query: 182 YATLAL 187
                +
Sbjct: 153 ETCAKI 158


>gi|70731551|ref|YP_261292.1| exonuclease [Pseudomonas fluorescens Pf-5]
 gi|68345850|gb|AAY93456.1| exonuclease [Pseudomonas fluorescens Pf-5]
          Length = 179

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 43/145 (29%), Gaps = 7/145 (4%)

Query: 2   TNHFVIYDYETF---GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E     G     +    +     V+RQ  + +  +  F +P    +  P  
Sbjct: 1   MPHWLVIDLEATTDEGGWPVSEMEIIEIGATLVNRQGREQDHFQ-RFVRPLRRPMLTPFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYD 116
             +T IT           +E      ++       + G+ +   +D    +  ++     
Sbjct: 60  RELTHITQANIDSA-APLSEVWGLFERWLGQHQPRLEGWASWGDYDRKQLQLEWHNQQLH 118

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAF 141
           S      + N +       R     
Sbjct: 119 SLLNEVPHMNLKQRFAKARRLERPL 143


>gi|302815434|ref|XP_002989398.1| hypothetical protein SELMODRAFT_229455 [Selaginella moellendorffii]
 gi|300142792|gb|EFJ09489.1| hypothetical protein SELMODRAFT_229455 [Selaginella moellendorffii]
          Length = 236

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 15/115 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G DV  DR  + A +  D +           I  ++       +       
Sbjct: 60  LVWIDLEMTGLDVCKDRILEIACIITDGKLTKSIEGPNLVIHQSDEILKGMGEWCQTHHA 119

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108
           A  +T    ++     V EA     + +F           +  N++  D  + R 
Sbjct: 120 ASGLT----ERVQNSKVTEAHAEMLVLKFVQKYTIAGYAQLAGNSVYNDLNFLRK 170


>gi|330873800|gb|EGH07949.1| oligoribonuclease [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 178

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  AE   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMSALE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|209550157|ref|YP_002282074.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209535913|gb|ACI55848.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 196

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 54/183 (29%), Gaps = 30/183 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                I D+ET   +             ++    ++   E    +P  D       + I 
Sbjct: 1   MKTIAI-DFET--ANEQRGSACSVGLAWIEEG--RVTRVEERLIRPR-DMRFSGMNIAIH 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+          E     H+  S      +  +N  FD        +R   D YR S
Sbjct: 55  GIRPEHVEDAPE-FPEVMDEFHEDIS---GATMIAHNAAFDFSV-----WRASLDLYRQS 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +            +  + +       WP       S +L  +A   G+  V+ H+A  D 
Sbjct: 106 Y----------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRFVH-HNAAEDA 150

Query: 182 YAT 184
              
Sbjct: 151 VVC 153


>gi|33151799|ref|NP_873152.1| ribonuclease T [Haemophilus ducreyi 35000HP]
 gi|54036330|sp|Q7VND8|RNT_HAEDU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|33148020|gb|AAP95541.1| ribonuclease T [Haemophilus ducreyi 35000HP]
          Length = 214

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D   + A +  ++D+Q   + +    F  +P ++   + +++   G
Sbjct: 21  VIIDVETAGLNAKTDALLELAAITVKMDQQGYLVPDQKCHFHIQPFENANINADSLKFNG 80

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYR 112
           I        A+ + +   E  + + +          +I  +N  FD  + +    R
Sbjct: 81  IDIHNPLRGAVAEAIAIPEMFKMVRRAIKEQGCQRAVIVAHNATFDQAFLQAAVKR 136


>gi|264677043|ref|YP_003276949.1| exonuclease, RNase T and DNA polymerase III [Comamonas testosteroni
           CNB-2]
 gi|262207555|gb|ACY31653.1| Exonuclease, RNase T and DNA polymerase III [Comamonas testosteroni
           CNB-2]
          Length = 174

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 7/122 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--ITGI 63
           V  D E  G +   DR  + A V      +      VF    +D+ L   +A      G 
Sbjct: 2   VWLDCEMTGLNPDRDRIIEIAVVVSSSDLQIRVEGPVFAIHQSDELLGGMDAWNKGTHGK 61

Query: 64  T--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
           +    K     + EAE    +  F           +  N+I  D  +      +     +
Sbjct: 62  SGLIDKVKASTISEAEAEAALIAFLGKYVPKGKTPLCGNSIGQDRRFMERYMPKLNNFFH 121

Query: 119 RW 120
             
Sbjct: 122 YR 123


>gi|255534927|ref|YP_003095298.1| DNA polymerase III subunit epsilon [Flavobacteriaceae bacterium
           3519-10]
 gi|255341123|gb|ACU07236.1| DNA polymerase III subunit epsilon [Flavobacteriaceae bacterium
           3519-10]
          Length = 185

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 58/211 (27%), Gaps = 28/211 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET       +   +   + V    + +  T+ +  KP +     P  + + 
Sbjct: 1   MIDFCAIDFET--ATHERNSACEMG-ICVVEDGQIV-KTQTWLIKPPNYPYFHPRNIDVH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP+          E               ++  +N  FD    R+         Y   
Sbjct: 57  GITPRDVQDSP-TFDEIWHEAENLMY---GNLMVAHNAGFDAGVLRSCL------DYYGF 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +    +    + + +  +                  + L+ LA  + I     H A  D 
Sbjct: 107 YKPKLNYLCSISIAKKSW-------------KNLPKYGLKSLAEQHQISF-KHHRAGDDA 152

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
                +  L  EK             K  L+
Sbjct: 153 EVCAKISLLAFEKLMITRTDEVHDVMKKNLK 183


>gi|15641021|ref|NP_230652.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|227081180|ref|YP_002809731.1| ribonuclease T [Vibrio cholerae M66-2]
 gi|254848136|ref|ZP_05237486.1| ribonuclease T [Vibrio cholerae MO10]
 gi|298498880|ref|ZP_07008687.1| ribonuclease T [Vibrio cholerae MAK 757]
 gi|9655469|gb|AAF94167.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|227009068|gb|ACP05280.1| ribonuclease T [Vibrio cholerae M66-2]
 gi|254843841|gb|EET22255.1| ribonuclease T [Vibrio cholerae MO10]
 gi|297543213|gb|EFH79263.1| ribonuclease T [Vibrio cholerae MAK 757]
          Length = 243

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 39  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 99  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 159 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 199

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 200 AHSALYDTQKTAELFCTIVNQ 220


>gi|116206844|ref|XP_001229231.1| hypothetical protein CHGG_02715 [Chaetomium globosum CBS 148.51]
 gi|88183312|gb|EAQ90780.1| hypothetical protein CHGG_02715 [Chaetomium globosum CBS 148.51]
          Length = 228

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          +  V  D E  G D   D   +   +  D Q + ++ 
Sbjct: 17 DPLVWIDCEMTGLDPETDAIIEIYCIITDGQLKLLDE 53


>gi|239631926|ref|ZP_04674957.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526391|gb|EEQ65392.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 172

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 26/198 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +VI D E    +   +R  Q + VR+       +    F   P+ D       +  +
Sbjct: 1   MKEYVIMDTE---FNSTSNRAIQISAVRIRDGLHIADQFNRFI--PSPDKFDQLHIIRTS 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            +     L    ++      +   +    T I+G++              R  +      
Sbjct: 56  NMRYSDYLALPSLQQTVRDYVA--WMRTTTDIVGWSIE------GDAGRIRETFKQGSHG 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                   D+ D++   Y F+                 LQ LA   GI    AH+A  D 
Sbjct: 108 IPKNWKFIDIADIVGKQYNFNATPP-------------LQGLANVLGIPANRAHNALDDC 154

Query: 182 YATLALVWLIREKKPKLF 199
             T  ++  +  +  KLF
Sbjct: 155 LRTFGVIKELESRDGKLF 172


>gi|325524019|gb|EGD02205.1| oligoribonuclease [Burkholderia sp. TJI49]
          Length = 208

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51


>gi|161525395|ref|YP_001580407.1| oligoribonuclease [Burkholderia multivorans ATCC 17616]
 gi|189349868|ref|YP_001945496.1| oligoribonuclease [Burkholderia multivorans ATCC 17616]
 gi|221201292|ref|ZP_03574332.1| oligoribonuclease [Burkholderia multivorans CGD2M]
 gi|221206254|ref|ZP_03579267.1| oligoribonuclease [Burkholderia multivorans CGD2]
 gi|160342824|gb|ABX15910.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
          multivorans ATCC 17616]
 gi|189333890|dbj|BAG42960.1| oligoribonuclease [Burkholderia multivorans ATCC 17616]
 gi|221173563|gb|EEE05997.1| oligoribonuclease [Burkholderia multivorans CGD2]
 gi|221179142|gb|EEE11549.1| oligoribonuclease [Burkholderia multivorans CGD2M]
          Length = 211

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   E 
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEI 51


>gi|116515288|ref|YP_802917.1| oligoribonuclease [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116257142|gb|ABJ90824.1| oligoribonuclease [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 181

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADD-YLPDPEAVFI 60
            + +  D ET G +  + +  + + +  D+    +E    +   +  +           I
Sbjct: 6   ENLIWVDLETTGLNPKIHKIIEISTIITDKNLNILEIGPNIIIFQKKEFLRKICHNFFQI 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
                  ++       E    ++  +F       N   I  N I  D  +      +   
Sbjct: 66  HKKNGLMKEIKNSKEDEKSAEKKTLKFLKKWIPKNISPICGNTISLDRNFLLYHMPKLKS 125

Query: 116 DSYRW 120
             Y  
Sbjct: 126 YFYYR 130


>gi|15837858|ref|NP_298546.1| oligoribonuclease [Xylella fastidiosa 9a5c]
 gi|11133792|sp|Q9PDX2|ORN_XYLFA RecName: Full=Oligoribonuclease
 gi|9106239|gb|AAF84066.1|AE003959_8 oligoribonuclease [Xylella fastidiosa 9a5c]
          Length = 193

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 31/126 (24%), Gaps = 13/126 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------ 58
            +  D E  G D   D   + A V  D Q   +     F        L   EA+      
Sbjct: 14  LIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLQML---EAMDEWNRN 70

Query: 59  -FITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
                   Q+ L   +  A+       F           +  N+I  D  +         
Sbjct: 71  QHRHSGLWQRVLNSEIQHAQAEASTIAFLQQWVKTGASPMCGNSICQDRRFLHRQMPCLE 130

Query: 115 YDSYRW 120
              +  
Sbjct: 131 RYFHYR 136


>gi|257482419|ref|ZP_05636460.1| oligoribonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289623748|ref|ZP_06456702.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289648635|ref|ZP_06479978.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330865886|gb|EGH00595.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|331009756|gb|EGH89812.1| oligoribonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 178

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  AE   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|255011868|ref|ZP_05283994.1| putative exonuclease [Bacteroides fragilis 3_1_12]
 gi|313149703|ref|ZP_07811896.1| DNA polymerase III [Bacteroides fragilis 3_1_12]
 gi|313138470|gb|EFR55830.1| DNA polymerase III [Bacteroides fragilis 3_1_12]
          Length = 175

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 53/199 (26%), Gaps = 29/199 (14%)

Query: 1   MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   F   D+ET  G   +        G+      E  +        P ++Y      + 
Sbjct: 1   MNLSFAAIDFETATGYMESACAV----GIVTVTDGEITDEYYSLIQPPENEYW--RANIL 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GITP+         A     I +        ++  +N +FD    +            
Sbjct: 55  VHGITPEMTESLPGFHA-IYPEIKKRLQ---GKVVVAHNEQFDRNVLKRTMRMY------ 104

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                   R D  +++   +      I             L       GIE    H+A +
Sbjct: 105 --------RLDYDELLLPEHWECTCRIYRSLGYKP---VNLSACCEREGIEL-KHHEALS 152

Query: 180 DVYATLALVWLIREKKPKL 198
           D      L     E+    
Sbjct: 153 DARGCAKLYLNYLERYRPF 171


>gi|84000359|ref|NP_001033281.1| three prime histone mRNA exonuclease 1 [Bos taurus]
 gi|81673840|gb|AAI09682.1| Three prime histone mRNA exonuclease 1 [Bos taurus]
 gi|296472395|gb|DAA14510.1| three prime histone mRNA exonuclease 1 [Bos taurus]
          Length = 349

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  +      +  +++  +  +         + +   +         +    R 
Sbjct: 190 TGITQDQVDKAD-TFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRL 248

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 298


>gi|269797470|ref|YP_003311370.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
 gi|269094099|gb|ACZ24090.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
          Length = 209

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 28/186 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D+ET   +   +     A + V +  +  +               D E + I 
Sbjct: 1   MLDFVALDFET--ANKFKNSACSLAVITV-KDGQITKKAYSLIK--PPFMSFDDECIEIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+  L +     +    I++  +     I+  +N +FD         R   D Y+  
Sbjct: 56  GIQPKDVLHE-KTFDQLWNAIYE--NHLKGNIMVAHNAKFDMNVL-----RATLDYYKIP 107

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W       D    ++   A  PD +            KL  +A   G+E    H A  D 
Sbjct: 108 W----PELDYACTVKLSRAVWPDLVN----------HKLNTMAAYIGVEF-KHHYALDDA 152

Query: 182 YATLAL 187
                +
Sbjct: 153 ETCAKV 158


>gi|320352856|ref|YP_004194195.1| Exonuclease RNase T and DNA polymerase III [Desulfobulbus
           propionicus DSM 2032]
 gi|320121358|gb|ADW16904.1| Exonuclease RNase T and DNA polymerase III [Desulfobulbus
           propionicus DSM 2032]
          Length = 181

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 48/176 (27%), Gaps = 9/176 (5%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPE 56
           M ++   V  D E  G +   D+  + A V  D   E +    V      ++ L   DP 
Sbjct: 1   MKDNSNLVWIDLEMTGLNPFTDKILEVATVVTDSHLEILADGPVIAIHQPEEVLAAMDPW 60

Query: 57  AVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFY 111
                  +    +  R      +      +F           +  N++  D  +      
Sbjct: 61  NTQHHRESGLIDRVRRSTFTCRQAELETLEFIKQWVDKRVSPMCGNSVWHDRRFLARFMP 120

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
                 +  + D    +   L     +  FS +       D   +  +L+      
Sbjct: 121 ELEQYFHYRNIDVSTLKELALRWAPDLPKFSKECHHLAHDDIRESIAELKHYGNCF 176


>gi|187734853|ref|YP_001876965.1| Exonuclease RNase T and DNA polymerase III [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187424905|gb|ACD04184.1| Exonuclease RNase T and DNA polymerase III [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 197

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 53/197 (26%), Gaps = 40/197 (20%)

Query: 4   HFVIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           HF   D+E+ G      D+P Q             +  E++    A +      A  + G
Sbjct: 12  HFAAIDFESAGAARGETDQPVQIGIAACP---RLEDEPELWTSYIAVEKPVLWSASQVHG 68

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +               I          ++  +N   +  + R      F        
Sbjct: 69  ITTEMLADAP-SFPSLWPEIRSRL---GQAVVVGHNPATERKFLRRFPGHGFGPW----- 119

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--------NA 174
                  D L + R                 G   + L  L  A G+             
Sbjct: 120 ------LDTLALGRMC-------------VPGLADYSLSSLCGALGLTCSVEALLPARRW 160

Query: 175 HDAKADVYATLALVWLI 191
           HDA  D  A+L +V  +
Sbjct: 161 HDALYDALASLLIVRFL 177


>gi|301784463|ref|XP_002927641.1| PREDICTED: ERI1 exoribonuclease 2-like [Ailuropoda melanoleuca]
          Length = 679

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +IES    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKRHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + I +                 +       F      
Sbjct: 97  TGIKQAQV-DEGVPLRICLSQFCKWIQKIQQEKKIIFATGIPDLPNAEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D         G     L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRVTYKIFYGRKPKGLSGALQEVGIEFLGREH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTALLAWKMIRD 232


>gi|281339701|gb|EFB15285.1| hypothetical protein PANDA_017444 [Ailuropoda melanoleuca]
          Length = 672

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +IES    + +P +  +     + +
Sbjct: 30  LIVIDFESTCWNDGKRHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCMEL 89

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + I +                 +       F      
Sbjct: 90  TGIKQAQV-DEGVPLRICLSQFCKWIQKIQQEKKIIFATGIPDLPNAEVKLCAFVTWSDW 148

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D         G     L       GIE     H
Sbjct: 149 DLGVCLEYECKRKQLLKPVFLNSWI--DLRVTYKIFYGRKPKGLSGALQEVGIEFLGREH 206

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 207 SGLDDSRNTALLAWKMIRD 225


>gi|154338249|ref|XP_001565349.1| phosphotransferase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 574

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 65/244 (26%), Gaps = 12/244 (4%)

Query: 3   NHFVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
           + +++ D E     GR +      +F  V VD R   ++   +  + +P  + +      
Sbjct: 50  DAYIVLDLEATCEAGRRITDAEVIEFPMVLVDPRTATQVAEFQ-RYVRPVKNPMLSRFCT 108

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT                   QF +         +      Y        +     
Sbjct: 109 ELTGITQNMVSHRD-PFPVVYCEALQFLAEAGL----GDAPPLRSYCVVTCGDWDLKTML 163

Query: 119 RWSWDNGNSRWDLLDVMRAIY-AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                    +   L   R         G+      +      + D+    G+ H   H +
Sbjct: 164 PSQIRISGQQGTPLSFQRWCNLKKYMSGLGLRDGGERGGPTDMPDMLRILGLPHQGRHHS 223

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
             D    +A V     K+  + +  +               +  P  +    +  +  NT
Sbjct: 224 GIDDCRNIAAVLCALLKRGLVVDTTFAT-EPLSAGTRRQKHSFLPCKNCVAPWPTALYNT 282

Query: 238 ALIA 241
             I 
Sbjct: 283 QGIC 286


>gi|304311282|ref|YP_003810880.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma
           proteobacterium HdN1]
 gi|301797015|emb|CBL45228.1| exonuclease domain in DNA-polymerase alpha and epsilon chain [gamma
           proteobacterium HdN1]
          Length = 297

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 51/185 (27%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            FV  D ET   +  +    Q   V        I     +      +   D   V + GI
Sbjct: 8   SFVAIDVET--ANANMASICQIGLVEY-SNGTPIREWSSY---VNPEDYFDGMNVSVHGI 61

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    +   V  +E S  +          ++  +   FD       F ++        W 
Sbjct: 62  TEGTVIGAPV-FSEVSEVLRSMLE---GRVVVCH-THFDRAAISKAFRKSGATELSCQW- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D   V R  +    +             + L  ++   G      HDA  D  A
Sbjct: 116 -----LDSAKVARRAWEVCAE-----------KGYGLSAVSKMLGY-TFQHHDALEDAKA 158

Query: 184 TLALV 188
           +  ++
Sbjct: 159 SANIM 163


>gi|154340904|ref|XP_001566405.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063728|emb|CAM39913.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 405

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 48/189 (25%), Gaps = 17/189 (8%)

Query: 5   FVIYDYETFGRDVAL---DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
            ++ D E               +  GV +D +  +++    F         P   P    
Sbjct: 76  IIVVDVEATCEQHNRNYPHEVIEIPGVLIDVRTGQVDRARSFHTYVKPWRNPRLTPFCTQ 135

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT +          E  +   +++    T   G   I   D       + + +   R
Sbjct: 136 LTGITQEMVDAAP-SITEAVQLFEKWYRE--TIPRGAKTIFAADGPWDFKNFIHEHHILR 192

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                 +  ++ LD+          G+               D            H    
Sbjct: 193 DHVGFPSIFYEYLDIRTTFAHRLNHGVPIKLDAMLRKMHLRFD---------GRPHSGFD 243

Query: 180 DVYATLALV 188
           D Y    L 
Sbjct: 244 DAYNIARLT 252


>gi|330501616|ref|YP_004378485.1| oligoribonuclease [Pseudomonas mendocina NK-01]
 gi|328915902|gb|AEB56733.1| oligoribonuclease [Pseudomonas mendocina NK-01]
          Length = 180

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 9/129 (6%)

Query: 1   MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPE 56
           M N  + +  D E  G +   D   + A +  D +   +    V     +++ L   D  
Sbjct: 1   MQNPSNLIWIDLEMTGLEPERDVIIEMATIVTDSELNVLAEGPVIAIHQSEEALAGMDEW 60

Query: 57  AVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFY 111
                G +   Q+     +  A    +   F           I  N+I  D  +      
Sbjct: 61  NTRTHGQSGLTQRVRESRIDTAAAEAQTIAFLEQWVPKGKSPICGNSIGQDRRFLYKYMP 120

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 121 ALEAYFHYR 129


>gi|146280991|ref|YP_001171144.1| hypothetical protein PST_0596 [Pseudomonas stutzeri A1501]
 gi|145569196|gb|ABP78302.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 185

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 58/198 (29%), Gaps = 28/198 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              FV  D E  G                       E    F    + +++  P A+ +T
Sbjct: 5   KEIFVSVDIEASGPIPGKYSMLSIGACV---ASNPAEQFSCFLKPISQEFV--PAALEVT 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFYD 116
           G++ ++   +G+   E   +   +             +G+N                   
Sbjct: 60  GLSLERLREEGLEPGEAMAQFRAWVESLADADQRVVFVGFNASFD--------------- 104

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              WS+ N      L +    I A     + + + +    S +  ++      E    HD
Sbjct: 105 ---WSFVNYYFHLFLGENPFGIAALDIKSMYFGASECAWKSTRSSEIEKVVNPESSGNHD 161

Query: 177 AKADVYATLALVWLIREK 194
           A  D      L  LIREK
Sbjct: 162 ALDDAVYQAELFNLIREK 179


>gi|147675730|ref|YP_001216478.1| ribonuclease T [Vibrio cholerae O395]
 gi|153216049|ref|ZP_01950254.1| ribonuclease T [Vibrio cholerae 1587]
 gi|153826220|ref|ZP_01978887.1| ribonuclease T [Vibrio cholerae MZO-2]
 gi|124114499|gb|EAY33319.1| ribonuclease T [Vibrio cholerae 1587]
 gi|146317613|gb|ABQ22152.1| ribonuclease T [Vibrio cholerae O395]
 gi|149740080|gb|EDM54249.1| ribonuclease T [Vibrio cholerae MZO-2]
 gi|227012823|gb|ACP09033.1| ribonuclease T [Vibrio cholerae O395]
          Length = 243

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 39  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 99  IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 159 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 199

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 200 AHSALYDTQKTAELFCTIVNQ 220


>gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str.
           13]
 gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
          Length = 302

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 29/184 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV  D+ET   +   +         V       E    F  KP +     P  ++I GI 
Sbjct: 3   FVAIDFET--ANEKRNSACSIGLTVVKDNKIVEEKY--FLIKPCEMR-FQPMNIWIHGIR 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+    +     E    I  +    +  ++  +N  FD    R                 
Sbjct: 58  PEDVENE-RTFNEIWEEIKDYI---DGNLVIAHNAAFDISVLR----------------- 96

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                D  D+    + ++   +   +      + KL  ++ A   E  + H    D  A 
Sbjct: 97  --KTLDFYDIPYPDFEYACTVVMAKNYYKSLPNHKLGTVSEALDFEFSHHHAG-EDARAC 153

Query: 185 LALV 188
             ++
Sbjct: 154 ANIL 157


>gi|255658850|ref|ZP_05404259.1| putative exonuclease [Mitsuokella multacida DSM 20544]
 gi|260849253|gb|EEX69260.1| putative exonuclease [Mitsuokella multacida DSM 20544]
          Length = 219

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVAL--------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           V+ D E                +   +   VR+D  +++    +  + KP +        
Sbjct: 4   VVVDLEMNPVSREFREVRRKLNEEVIEIGAVRLDENFQQEAEFQC-YVKP-EYGPIKKHI 61

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGIT           A   +    +     T I  Y+    D    R+   R     
Sbjct: 62  TSLTGITQAMVADK-KTYAACFQDFVDWVGEEETKI--YSWSMSDIKQLRSEC-RYKLPD 117

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           +   W N           R +        +    +  A    L  +           H A
Sbjct: 118 FDIEWLNE----------RWVDLQQEFDDRLGLHNSLALKHALGAMDHKF---EGTQHTA 164

Query: 178 KADVYATLALVWLIREKKP 196
            AD   T A++ L+++   
Sbjct: 165 LADAINTSAILTLMQDDAK 183


>gi|269125505|ref|YP_003298875.1| Exonuclease RNase T and DNA polymerase III [Thermomonospora
          curvata DSM 43183]
 gi|268310463|gb|ACY96837.1| Exonuclease RNase T and DNA polymerase III [Thermomonospora
          curvata DSM 43183]
          Length = 204

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
          M +  V  D E  G D+  D   + A +  D +   ++       KP ++ L
Sbjct: 1  MNDLLVWADCEMTGLDLRKDALVEIAVLVTDSELNILDKGVDVVIKPPEEAL 52


>gi|323347541|gb|EGA81809.1| Rex2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 217

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47
              V  D E  G D   DR  +   +  D     +       +S              K 
Sbjct: 53  KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +  +         G+T +    +  +   E E    I ++    N  ++  N++  D  
Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169

Query: 105 YSRNIFYRNFYDSYRW 120
           +    F +     +  
Sbjct: 170 FMVREFPKVIDHLFYR 185


>gi|107022156|ref|YP_620483.1| oligoribonuclease [Burkholderia cenocepacia AU 1054]
 gi|116689101|ref|YP_834724.1| oligoribonuclease [Burkholderia cenocepacia HI2424]
 gi|170732389|ref|YP_001764336.1| oligoribonuclease [Burkholderia cenocepacia MC0-3]
 gi|254245960|ref|ZP_04939281.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia
          cenocepacia PC184]
 gi|123371764|sp|Q1BXZ5|ORN_BURCA RecName: Full=Oligoribonuclease
 gi|166215751|sp|A0K5Q4|ORN_BURCH RecName: Full=Oligoribonuclease
 gi|105892345|gb|ABF75510.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
          cenocepacia AU 1054]
 gi|116647190|gb|ABK07831.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
          cenocepacia HI2424]
 gi|124870736|gb|EAY62452.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia
          cenocepacia PC184]
 gi|169815631|gb|ACA90214.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
          cenocepacia MC0-3]
          Length = 206

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51


>gi|241666527|ref|YP_002984611.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861984|gb|ACS59649.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 262

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 47/192 (24%), Gaps = 40/192 (20%)

Query: 7   IYDYET--FGRDVALDRPAQFAGVRV----DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + D ET   G +       +     V    D  W+  E                PE + I
Sbjct: 21  VVDLETAGNGLN----DVCEVGWQDVVLGHDGGWQVDEERGSLL--INPGRPISPETMAI 74

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I   +          F + I      P   +I     R                ++  
Sbjct: 75  HHIVDAEVATAP-----FWKEIASSVLRPEGGVIALAAHRASFEQRYCTPRFTGGAAWIC 129

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV---NAHDA 177
           +W                         WP      ++  L+ L +  G+ H     AH A
Sbjct: 130 TWK-------------------CALRLWPEL-PRFSNQMLRYLRMPEGLVHAIGLPAHRA 169

Query: 178 KADVYATLALVW 189
             D Y T   + 
Sbjct: 170 MPDAYVTAHHLR 181


>gi|323455145|gb|EGB11014.1| hypothetical protein AURANDRAFT_6072 [Aureococcus anophagefferens]
          Length = 194

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 45/209 (21%), Gaps = 38/209 (18%)

Query: 5   FVIYDYE------TF--GRDVALDRPAQFAGVRVDRQ-WEKIEST----EVFFCKPADDY 51
            V+ D+E      T    +        +F  V VD    E  +         F +P +  
Sbjct: 4   LVVVDFECTCVADTTYQKKTPFSHEIIEFPAVVVDLTLGESQDVFARPTFQRFVRPTERP 63

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSR 107
                   +TGI+ +         A+       +       P T  +  +       +  
Sbjct: 64  RLSDFCTKLTGISQETV-DAAEPLADVLAAFRAWLEEQNLAPGTYAMAADGPWDLRKFLL 122

Query: 108 NIFYRNFY--DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
               R     D    +W                             D          LAL
Sbjct: 123 GECARKHLAADPRWRTW------------------VDVSLHLRKHYDVKRPGNLENKLAL 164

Query: 166 ANGIEHVNAHDAKADVYATLALVWLIREK 194
                    H    D      L   +R  
Sbjct: 165 LGLAFEGRPHSGLDDARNIARLALRLRRD 193


>gi|195576205|ref|XP_002077967.1| GD23197 [Drosophila simulans]
 gi|194189976|gb|EDX03552.1| GD23197 [Drosophila simulans]
          Length = 353

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 28/138 (20%)

Query: 4   HFVIYDYETFGRDVALD---RPAQF------AGVRVDRQW--------------EKIEST 40
            F + D ET       +      +       A +   ++                 +   
Sbjct: 19  TFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLTKKKEEQNQDEQQELPAAPRVLHKL 78

Query: 41  EVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNN 98
            V F       + DPEA  ITG++     R+  ++ + ++ I  F     +  C++ +N 
Sbjct: 79  NVLF---QPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNG 135

Query: 99  IRFDDYYSRNIFYRNFYD 116
             FD    R  F +   +
Sbjct: 136 WGFDFPILRQAFEKLNIE 153


>gi|150016887|ref|YP_001309141.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903352|gb|ABR34185.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 976

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/393 (11%), Positives = 105/393 (26%), Gaps = 22/393 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +  D ET G D       +   V+V      I +      +P         ++    
Sbjct: 10  DNVIYLDIETTGLDETCSEIIEIGAVKVKNG--VITTYNTLI-RPRGRVPISIYSLC--- 63

Query: 63  ITPQKALRDGVVEAEFSRRI-HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
                     ++ A     I  +         +  +N  F+  +        +    + +
Sbjct: 64  ---SDLKEADLLSARSLNSIKQEVLEFLEDLPLICHNGNFERKFLSF-----YIPEIKNT 115

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
             +      +L+  R  Y  +    +  + +       L D      + +          
Sbjct: 116 IMDSMELAIILEPWRKEYNLNSLIKEITNLNKDELHRGLSDSIDTLKVVNSLLLRQWNRE 175

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRK--LIDIQNMTPLVHVSGMFGASRSNTAL 239
             +      +     K ++YL  +     L K      +  T + ++       +     
Sbjct: 176 ENSRKKDKSLHNLIIKEYQYLQKWPWTKHLLKPPFFIDEGYTYVNYLENKEEELKLKKIP 235

Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLN 298
           I  + +    ++  I  N  GD       D  + AK++  + ++ + + +  P       
Sbjct: 236 IDYLKYEDLLENEEI-WNNGGDFGYQYRKDQKEFAKKIRENFEKGERIFIEAPTGSGKTF 294

Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
              I+  I+    +   R          N   L+ Q   RD    +              
Sbjct: 295 AYVIIAAIETYLNKQKNRKDDASFIISTNTKELQNQLIERDIPTILKKLRLDDKLNYGAM 354

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPF 391
           +    +         +       ++   L L F
Sbjct: 355 KGKGNYLCIERINRCEEFQM---DEKGNLALLF 384


>gi|113460447|ref|YP_718509.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|170718007|ref|YP_001783526.1| exonuclease RNase T and DNA polymerase III [Haemophilus somnus
           2336]
 gi|112822490|gb|ABI24579.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|168826136|gb|ACA31507.1| Exonuclease RNase T and DNA polymerase III [Haemophilus somnus
           2336]
          Length = 236

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 60/185 (32%), Gaps = 23/185 (12%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +++ D+ET G +  +D     A V +D     ++ ++ +    A+      + V I  I
Sbjct: 51  SYLVIDFETTGLNSMMDNILSVATVPIDNL--TLDISKAWHQFVAEQQEIKEDTVIINHI 108

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            PQ          +   ++ +        +I + +     +    +  R     +   W 
Sbjct: 109 LPQMLNGA-ETLDDTMNKLFELMQ--GRILIAHGSTIEKRFILHYLNVRYNLSQFPLFW- 164

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D L + R++              D   +++L  +     +     H+A  D  +
Sbjct: 165 -----LDTLKIERSLC------------QDNENNYQLSHIRNKYNLPEYIGHNALIDAIS 207

Query: 184 TLALV 188
              L 
Sbjct: 208 AGELF 212


>gi|326385547|ref|ZP_08207181.1| transposase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209881|gb|EGD60664.1| transposase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 307

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 50/178 (28%), Gaps = 31/178 (17%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV+ D ET      +    Q   V   R   ++ + E             P  V I GIT
Sbjct: 33  FVVVDVET--ACARVSSICQIGIVGF-RDGREMFAYETL---VDPRDEFAPFNVAIHGIT 86

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +   +          IH          +   +  FD          +        W  
Sbjct: 87  ADRVDGEPTF-----DDIHGIVDAHLRGRVTVAHSLFDKSALAAACGVSGQPVIETEW-- 139

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                  LD +R           WP       S +L  LA   GIEH   HDA +D  
Sbjct: 140 -------LDSVRVAKL------AWPQLQ----SHRLNVLARFLGIEH-RHHDALSDAR 179


>gi|319761926|ref|YP_004125863.1| exonuclease rnase t and DNA polymerase iii [Alicycliphilus
           denitrificans BC]
 gi|330826210|ref|YP_004389513.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
           denitrificans K601]
 gi|317116487|gb|ADU98975.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
           denitrificans BC]
 gi|329311582|gb|AEB85997.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
           denitrificans K601]
          Length = 203

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60
            + V  D E  G +   +R  + A V      E      V      D  L   +A     
Sbjct: 28  QNLVWLDCEMSGLNPETERLLEIAVVVTGPGLEPRVEGPVLVIHQPDTVLDAMDAWNKGT 87

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    K     + EA+  ++I  F S         +  N+I  D  +      R   
Sbjct: 88  HGRSGLIDKVRASTLTEADAEQQIIDFLSRYVPKGKVPMCGNSIGQDRRFLVKYMPRLEA 147

Query: 116 DSYRW 120
             +  
Sbjct: 148 FFHYR 152


>gi|328776163|ref|XP_003249125.1| PREDICTED: hypothetical protein LOC100577651 [Apis mellifera]
          Length = 321

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 77/248 (31%), Gaps = 17/248 (6%)

Query: 1   MTNHFVIYDYETFGRDVALD--RPAQFAGVRVDRQ--WEKIE----STEVFFCKPADDYL 52
           M   F+ +D ET G        +  + + + V R       +      +        +  
Sbjct: 1   MIRTFIFFDLETTGLITKNCMPKVTELSLIAVSRTAVCNTKDFLPRVLQKLILPIHPNLN 60

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIF 110
              E   +TG++ +          +    I  F +     TC + YN   FD     +  
Sbjct: 61  ISKEIETLTGLSNENLCEIQHFNCDVYNLIINFINRQKAPTCFVAYNGNNFDYPILLSE- 119

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGI 169
                 +   S+       D+L +++  +       +  ++ + + + ++  L       
Sbjct: 120 ----LKTIDKSFSENILSIDMLQLIKDFFLREEPIKKMNNQINNSCNIEVSTLLNDGYDK 175

Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLY-DYRNKNQLRKLIDIQNMTPLVHVSG 228
              +A D+  +          ++ +K         +    N   K+ ++   TP   +  
Sbjct: 176 ILSDALDSIINTNDDNKNDTFLKIEKTMSHSNSISNTSETNYCTKMQELNEKTPKNQIIK 235

Query: 229 MFGASRSN 236
           +  + ++ 
Sbjct: 236 IQHSDKNF 243


>gi|327400242|ref|YP_004341081.1| DNA polymerase III subunit epsilon [Archaeoglobus veneficus SNP6]
 gi|327315750|gb|AEA46366.1| DNA polymerase III, epsilon subunit [Archaeoglobus veneficus SNP6]
          Length = 196

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 64/215 (29%), Gaps = 25/215 (11%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           ++  + + D E+ G +   D     A + +      +        +P        E++  
Sbjct: 5   LSARYSVIDVESTGLNPKKDEIVAIAVIPMVGSRIILSDYFFSLVRPKK---LKGESIKY 61

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI  +   +        + R+           I  +   FD    ++ F R        
Sbjct: 62  HGIDIKAVSKAPE-FQSIASRLKHMLEDS----IIVSYTEFDAKILKSHFSRLKI----- 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D +D+ +  +  +        ++  A +  +  L     +E +  H A AD
Sbjct: 112 -----RLELDCIDISQVEHWIA-------RKEGRAENHDMDGLIKKYSLEEIYRHSALAD 159

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215
            Y T  +      K  +    L + +   +  K  
Sbjct: 160 AYYTACIFQRQLVKLAEYGVTLQELKRIGKREKFF 194


>gi|323303994|gb|EGA57774.1| Rex2p [Saccharomyces cerevisiae FostersB]
          Length = 186

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 37/137 (27%), Gaps = 21/137 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47
              V  D E  G D   DR  +   +  D     +       +S              K 
Sbjct: 53  KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +  +         G+T +    +  +   E E    I ++    N  ++  N++  D  
Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169

Query: 105 YSRNIFYRNFYDSYRWS 121
           +    F +         
Sbjct: 170 FMVREFPKVIDQCXFTE 186


>gi|320162584|gb|EFW39483.1| three prime histone mRNA exonuclease [Capsaspora owczarzaki ATCC
           30864]
          Length = 897

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 5   FVIYDYETF-----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           FV+ DYE                 +F  V V+ +  +I  +   + +P  +    P    
Sbjct: 576 FVVIDYEATCEENASFSTYPHEIIEFPAVVVNARTGEIVHSWRSYVRPVLNPTLTPFCTQ 635

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSV 88
           +TGIT  +     V E +   +   F   
Sbjct: 636 LTGITQSQVDASPVFE-DVFEQFVVFLRD 663


>gi|149633012|ref|XP_001508919.1| PREDICTED: similar to Three prime histone mRNA exonuclease 1
           [Ornithorhynchus anatinus]
          Length = 467

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 66/225 (29%), Gaps = 24/225 (10%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             + D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 248 ICVIDFEATCEEGNPPEFIHEIIEFPIVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 307

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT Q  +       +  +++ ++            +I  D  +  + F          
Sbjct: 308 TGIT-QDVVDRADTFPQVLQKVVEWMRQKELGTKYKYSILTDGSWDMSKFLTIQCRISHL 366

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
            +     +W        I     +  + P         KL  +    G+ +    H    
Sbjct: 367 KYPAFAKKW------INIRKSYGNFYKVPRSQT-----KLAIMLEKLGMSYAGRPHSGLD 415

Query: 180 DVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
           D      +   ++++              K    +L  + + TP+
Sbjct: 416 DSKNIARIAVRMLQDGCQ------LRVNEKMHAGQLTSVTSATPI 454


>gi|160872136|ref|ZP_02062268.1| oligoribonuclease Orn [Rickettsiella grylli]
 gi|159120935|gb|EDP46273.1| oligoribonuclease Orn [Rickettsiella grylli]
          Length = 181

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          + +  D E  G D   D+  + A +  D Q E IE 
Sbjct: 7  NLIWIDLEMTGLDTNQDKIIEIATIITDSQLEIIEE 42


>gi|297682312|ref|XP_002818868.1| PREDICTED: 3'-5' exoribonuclease 1-like [Pongo abelii]
          Length = 349

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++  +  +         + +   +         +    R 
Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRL 248

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDD 298


>gi|240142475|ref|YP_002966986.1| hypothetical protein MexAM1_META2p0806 [Methylobacterium extorquens
           AM1]
 gi|240012420|gb|ACS43645.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 194

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 50/201 (24%), Gaps = 25/201 (12%)

Query: 2   TNHFVIYDYETF----GRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           T+  +  D E      G          +   V  D    +I   E +  +PA        
Sbjct: 6   TDRILAIDTEWTCWEGGAPPGMRSEILEIGIVEADVATLEILREESWLVRPA-YSEVSGY 64

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TGI   +A R G    E  R + + F      ++ +     D             +
Sbjct: 65  CERLTGIAGDEARRFGRPLPEVMRTLTKQFGPSRKALVSW---GDDLGGIEAECRAFGVE 121

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +                  R +           +      S     LA          H 
Sbjct: 122 NPFR---------------RELAVDFGLVHALSAGCRERPSLD-AALAAEGVPFEGRRHR 165

Query: 177 AKADVYATLALVWLIREKKPK 197
           A  D  AT+ L      ++  
Sbjct: 166 ALPDALATMRLFLAFAARQRP 186


>gi|206561254|ref|YP_002232019.1| oligoribonuclease [Burkholderia cenocepacia J2315]
 gi|198037296|emb|CAR53218.1| oligoribonuclease [Burkholderia cenocepacia J2315]
          Length = 206

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51


>gi|115351008|ref|YP_772847.1| oligoribonuclease [Burkholderia ambifaria AMMD]
 gi|172060013|ref|YP_001807665.1| oligoribonuclease [Burkholderia ambifaria MC40-6]
 gi|122323700|sp|Q0BH60|ORN_BURCM RecName: Full=Oligoribonuclease
 gi|115280996|gb|ABI86513.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
          ambifaria AMMD]
 gi|171992530|gb|ACB63449.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
          ambifaria MC40-6]
          Length = 206

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51


>gi|148272620|ref|YP_001222181.1| oligoribonuclease [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830550|emb|CAN01485.1| oligoribonuclease [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 206

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 11/128 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFI 60
           +  V  D E  G D+A+D   + A V  D     ++        P    L +       +
Sbjct: 6   DRLVWIDCEMTGLDLAIDELVEVAVVVTDFDLVPVDDGFTIVINPDPAALANMGEFVTEM 65

Query: 61  T---GITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
               G+  +  +  GV     E      + Q         I  N I  D  +      R 
Sbjct: 66  HRSSGLLDE--IPAGVSLADAEFAVLEYLLQHVPTGGKAPIAGNTIGTDRAFLAKYMPRV 123

Query: 114 FYDSYRWS 121
               +  S
Sbjct: 124 DAHLHYRS 131


>gi|153811608|ref|ZP_01964276.1| hypothetical protein RUMOBE_02000 [Ruminococcus obeum ATCC 29174]
 gi|149832349|gb|EDM87434.1| hypothetical protein RUMOBE_02000 [Ruminococcus obeum ATCC 29174]
          Length = 319

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 93/346 (26%), Gaps = 45/346 (13%)

Query: 4   HFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           +++++D E      G+  +  R      +   V+++ Q E ++  +    KP        
Sbjct: 2   NYIVFDLEWNQSPGGKKYSNSRLPFEIIEIGAVKMNEQREVVDVFQ-RLVKPQVYNWIHD 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +  +  +     G    +    + +F        +       D    +        
Sbjct: 61  SIHEVIHVDYKDLAD-GEPFQQA---VREFLKWCGEEYVFCTWGNQDVMELQRNMKYYGM 116

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
            S         + +D+  +    +  +          D     K QD            H
Sbjct: 117 LSLL---PGPVTYYDVQKIYGICHEEAGGRRSLEFAIDQMGIPKAQDF-----------H 162

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF----- 230
            A  D   T  +   +      +   +  Y+N    ++ I I   T   +VS  F     
Sbjct: 163 RALTDARYTGDIFKTLEPAAVCVNSSIDVYQNPKNKKEEIFISYPTYDQYVSREFADKEK 222

Query: 231 -GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289
               R   +   PV   P  +      N S              +  L   H  +KG V 
Sbjct: 223 VMKDREVASTRCPVCHMPAKRKIRWFMNNSRAYE----------SVSLCQKHGYIKGKVR 272

Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT 335
             I+    +    +  +   +++  E          +     RQ  
Sbjct: 273 --IRHTDEDAYYAIKKLKRIEEKDAEEIREKRDSLRKKRQAKRQSE 316


>gi|330899885|gb|EGH31304.1| oligoribonuclease [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 178

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NWFHYR 129


>gi|302841163|ref|XP_002952127.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f.
           nagariensis]
 gi|300262713|gb|EFJ46918.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f.
           nagariensis]
          Length = 1059

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 51/169 (30%), Gaps = 23/169 (13%)

Query: 35  EKIESTEVFFCKPADDYLP---DPEAVFITGITPQKALRDGVVEA---EFSRRIHQFFSV 88
           + I  T      P     P   DP    +TGITP   L           F   ++Q    
Sbjct: 8   QLIGDTFSSLVNPNGRGRPVQMDPRVTSLTGITPDMLLHAPGEPWVALAFLCWLYQRCRA 67

Query: 89  PN---TCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDG 145
                  ++G+N   +D  +   +  R                W ++D +R    +    
Sbjct: 68  GGGVRPALVGHNLRVYDSPFLARMLARQGCLVPY--------SWCMVDSLRLARRWKL-- 117

Query: 146 IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
                   G   FKLQ L     I   + H A  D   T+ ++  +   
Sbjct: 118 ----WSSRGGGDFKLQSLRELYNIPRRDEHRALPDALVTVDVLAAMVRH 162


>gi|261210895|ref|ZP_05925185.1| hypothetical protein VCJ_001149 [Vibrio sp. RC341]
 gi|260839870|gb|EEX66470.1| hypothetical protein VCJ_001149 [Vibrio sp. RC341]
          Length = 156

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 10/129 (7%)

Query: 12  TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71
           T G         +     +D    KI     +F KP  D +       +TGITP+K  + 
Sbjct: 3   TTG------EIIEVGLAEIDLSAGKIVKRAQYFVKPEHDEI-SLFCAELTGITPRKIEKQ 55

Query: 72  GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131
           G   AE  + + + F   N     +     DD    +             + N  + + +
Sbjct: 56  GRPLAEVLQSMVKNFGGSNKIYASW---GRDDRILIHECQEKGIPVPFQEFLNLATLYRI 112

Query: 132 LDVMRAIYA 140
              ++    
Sbjct: 113 QHRLKDKRI 121


>gi|238917958|ref|YP_002931475.1| sporulation inhibitor KapD [Eubacterium eligens ATCC 27750]
 gi|238873318|gb|ACR73028.1| sporulation inhibitor KapD [Eubacterium eligens ATCC 27750]
          Length = 324

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 66/239 (27%), Gaps = 29/239 (12%)

Query: 1   MTNHFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           M  ++++ D E      G+  + D       Q    +V+ + + ++  +    KP     
Sbjct: 1   MFMNYIVMDLEWNQSAKGKQFSEDHFPFEIIQIGAAKVNEKLDIVDEWQCTI-KPQVYTK 59

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  I GIT            +F   + +F                D    R     
Sbjct: 60  LQNTVRKILGITENDLANG----TDFVSGVTEFLEWCGDDYTFVTWGSMDITELRRNMKF 115

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                            DL  +    +             DG T   L+      GI+  
Sbjct: 116 YDVPENF---PKPLLYLDLQKLYSINF------------SDGKTRMNLKSAIDEQGIKGD 160

Query: 173 NA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
              H A +D   T  ++  +   + K F  +  +      +  + +   T   ++S  F
Sbjct: 161 EHYHSAMSDARYTAKIMKKLDFDRVKKFCSIDTFTIPESRKDEVYLNFGTYEKYISKGF 219


>gi|258514625|ref|YP_003190847.1| Exonuclease RNase T and DNA polymerase III [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257778330|gb|ACV62224.1| Exonuclease RNase T and DNA polymerase III [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 957

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
          M  +FV+    T G D   +   + + VRV     +I  T  F+ KPA       +   I
Sbjct: 1  MLENFVVAHIITTGNDPLKEDVIETSLVRV--SGSQIAETISFYSKPARKLPVRVK--NI 56

Query: 61 TGITPQKALRDGVVEAEFSRRIHQFF 86
          TG++ +          E    I  F 
Sbjct: 57 TGLSDETLADKP-FFNELLPEILSFI 81


>gi|254480996|ref|ZP_05094242.1| exonuclease superfamily protein [marine gamma proteobacterium
          HTCC2148]
 gi|41582287|gb|AAS07901.1| oligoribonuclease [uncultured marine bacterium 463]
 gi|214038791|gb|EEB79452.1| exonuclease superfamily protein [marine gamma proteobacterium
          HTCC2148]
          Length = 182

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 12/36 (33%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          + V  D E  G D   D   + A +  D     +  
Sbjct: 6  NLVWVDLEMTGLDPDEDVVIEIATIVTDSDLNTLAE 41


>gi|330951466|gb|EGH51726.1| oligoribonuclease [Pseudomonas syringae Cit 7]
          Length = 178

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTVSMAEAETQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|149010360|ref|ZP_01831731.1| exonuclease [Streptococcus pneumoniae SP19-BS75]
 gi|303254460|ref|ZP_07340566.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455]
 gi|303259905|ref|ZP_07345880.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP-BS293]
 gi|303262320|ref|ZP_07348264.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264742|ref|ZP_07350660.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397]
 gi|303267563|ref|ZP_07353409.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457]
 gi|303269154|ref|ZP_07354933.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458]
 gi|147764841|gb|EDK71770.1| exonuclease [Streptococcus pneumoniae SP19-BS75]
 gi|301801833|emb|CBW34546.1| putative exonuclease [Streptococcus pneumoniae INV200]
 gi|302598627|gb|EFL65667.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455]
 gi|302636643|gb|EFL67134.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639110|gb|EFL69570.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           SP-BS293]
 gi|302641341|gb|EFL71709.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458]
 gi|302642912|gb|EFL73213.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457]
 gi|302645829|gb|EFL76058.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397]
          Length = 196

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R   +I++ + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +      +F    +  +IGYN  + D                  
Sbjct: 58  TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYESFLESDQ 170


>gi|300856782|ref|YP_003781766.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii
           DSM 13528]
 gi|300436897|gb|ADK16664.1| putative exonuclease with a BRCT domain [Clostridium ljungdahlii
           DSM 13528]
          Length = 436

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 104/401 (25%), Gaps = 35/401 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQ--FAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M   FV  D+ET   +   +       A V+      KI   + F   P      + + +
Sbjct: 1   MLFDFVAIDFET--ANNNFNSACSLGIAAVK----NNKICKKDYFLIHP-PTLDFNKKNI 53

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GITP+      +   +    IH +F      II  +N  FD    +N          
Sbjct: 54  SINGITPKDIENSPL-FPDIWNDIHTYFDDN---IIIAHNAVFDMSVLKN---CLLEYDI 106

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                N      +   +                        L+D A   G++  + H++ 
Sbjct: 107 SMPNFNYICSIPISTKLCGGKGIGK---------------SLEDRAKYFGVDLGHHHNSL 151

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
            D  A   LV    ++  K     + +   +   K     N       +     + +   
Sbjct: 152 DDAAACANLVIECIKRAHKKNLESFCHTYTSLPIKTFKDLNPQKGFIANTKNSFTNNKFN 211

Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
            +      P   + +   N   +  V    +   L ++         G           +
Sbjct: 212 TVKISEIKPDNDNIIDTSNPFYNKNVVFTGELKSLGRKEAMQKVVNLGGTLKSGVSKKTD 271

Query: 299 KCPI-LMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDV 356
              +         +              EN + ++    +         NK  +    + 
Sbjct: 272 YLIVGNQDKSLVGENGISSKEEKAAELNENGSSIKILNESEFLELIKTPNKENSFDDSNE 331

Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLP 397
              L      +     ++++     + LS       D    
Sbjct: 332 VVDLNSTIIFNTLDDKINKLR--EWKLLSRTAADLKDIYYK 370


>gi|126335884|ref|XP_001375011.1| PREDICTED: similar to 3-5 exonuclease TREX1 [Monodelphis domestica]
          Length = 284

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 62/210 (29%), Gaps = 30/210 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST-----------------EVFF 44
               V  D E  G   +  +  +   V + R   +                     +   
Sbjct: 1   METLVFMDLEATGLPFSQPKVTELCLVAIHRHALEASQQAPPPGGASSVPPTPRVADKLC 60

Query: 45  CKPADDYLPDPEAVFITGITPQKALRD--GVVEAEFSRRIHQFFS--VPNTCIIGYNNIR 100
              A        A  +TG+          G  ++  +  +  F     P  C++ +N  R
Sbjct: 61  LCVAPGKACSAAASSLTGLNTAMLTAHRRGPFDSALADLLQAFLRRQRPPLCLVAHNGDR 120

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           FD    +         +   S   G    D +  +RA+    P     P       S+ L
Sbjct: 121 FDFPLLQAELSAAGLGTDALS---GAFCADSITALRALDRSGP-----PIESSQRKSYSL 172

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
            ++ A   G    + H A+ DV A +++  
Sbjct: 173 GNVYARLFGQAAPDTHTAEGDVLALVSVCQ 202


>gi|115352016|ref|YP_773855.1| exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
 gi|115282004|gb|ABI87521.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
           AMMD]
          Length = 180

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 33/203 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPE 56
           M ++   F+  D ET G                    +  +  + F C+        DP+
Sbjct: 1   MKSNREVFLSVDVETSGPIPGEFSLLTIGA------CDVFDPQQTFSCELKPTTRNADPK 54

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFF-----SVPNTCIIGYNNIRFDDYYSRNIFY 111
           A+ +TG++  +  RDG+      ++   +             +G+N   FD  +    F+
Sbjct: 55  ALEVTGLSLDRLERDGLDPVVGMQKFRDWVISTAGPDATPVFVGFNAP-FDWSFVNYYFH 113

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R     Y      G +  D+  +                        +   +A A     
Sbjct: 114 R-----YLGENPFGFAALDIKSMYMGAA------------RSSWAQTRSSQIAAALNPTL 156

Query: 172 VNAHDAKADVYATLALVWLIREK 194
              HDA  D      L  LI+++
Sbjct: 157 KGDHDALHDAQYQAELFRLIQQR 179


>gi|169633084|ref|YP_001706820.1| ribonuclease T [Acinetobacter baumannii SDF]
 gi|169796663|ref|YP_001714456.1| ribonuclease T [Acinetobacter baumannii AYE]
 gi|184157422|ref|YP_001845761.1| ribonuclease T [Acinetobacter baumannii ACICU]
 gi|213156111|ref|YP_002318531.1| ribonuclease T [Acinetobacter baumannii AB0057]
 gi|215484153|ref|YP_002326378.1| ribonuclease T [Acinetobacter baumannii AB307-0294]
 gi|239503321|ref|ZP_04662631.1| ribonuclease T [Acinetobacter baumannii AB900]
 gi|260550758|ref|ZP_05824966.1| ribonuclease T [Acinetobacter sp. RUH2624]
 gi|260557371|ref|ZP_05829586.1| ribonuclease T [Acinetobacter baumannii ATCC 19606]
 gi|301347763|ref|ZP_07228504.1| ribonuclease T [Acinetobacter baumannii AB056]
 gi|301512246|ref|ZP_07237483.1| ribonuclease T [Acinetobacter baumannii AB058]
 gi|301596674|ref|ZP_07241682.1| ribonuclease T [Acinetobacter baumannii AB059]
 gi|332854542|ref|ZP_08435420.1| ribonuclease T [Acinetobacter baumannii 6013150]
 gi|332870163|ref|ZP_08439075.1| ribonuclease T [Acinetobacter baumannii 6013113]
 gi|332875101|ref|ZP_08442937.1| ribonuclease T [Acinetobacter baumannii 6014059]
 gi|169149590|emb|CAM87480.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter baumannii AYE]
 gi|169151876|emb|CAP00718.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter baumannii]
 gi|183209016|gb|ACC56414.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
 gi|213055271|gb|ACJ40173.1| ribonuclease T [Acinetobacter baumannii AB0057]
 gi|213986450|gb|ACJ56749.1| ribonuclease T [Acinetobacter baumannii AB307-0294]
 gi|260406264|gb|EEW99748.1| ribonuclease T [Acinetobacter sp. RUH2624]
 gi|260408997|gb|EEX02300.1| ribonuclease T [Acinetobacter baumannii ATCC 19606]
 gi|322507302|gb|ADX02756.1| Ribonuclease T [Acinetobacter baumannii 1656-2]
 gi|323517321|gb|ADX91702.1| ribonuclease T [Acinetobacter baumannii TCDC-AB0715]
 gi|332727951|gb|EGJ59346.1| ribonuclease T [Acinetobacter baumannii 6013150]
 gi|332732430|gb|EGJ63686.1| ribonuclease T [Acinetobacter baumannii 6013113]
 gi|332736718|gb|EGJ67709.1| ribonuclease T [Acinetobacter baumannii 6014059]
          Length = 220

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 31/211 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +  D Q +            P +    D  ++   G
Sbjct: 24  VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83

Query: 63  ITP------QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P        A  +        + +++          ++  +N  FD  + +    R+ 
Sbjct: 84  IDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQAAIARSG 143

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172
                    N    + ++D +          +             L    +  GIE    
Sbjct: 144 -----TKNQNPFHSFSVMDTVTLSAVMFGQTV-------------LAKACIQAGIEFDGK 185

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLY 203
            AH A  D   T  L   I  K         
Sbjct: 186 EAHSALYDTQKTAELFCYILNKLSPYLLDSL 216


>gi|146307535|ref|YP_001188000.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           ymp]
 gi|145575736|gb|ABP85268.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           ymp]
          Length = 182

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 50/188 (26%), Gaps = 23/188 (12%)

Query: 6   VIYDYE-TF--GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D E T   G     +    +     V     + +  +  F KP            +T
Sbjct: 5   LVIDLEATTDEGGWPLEEMEIIEIGASLVGADGHERDHFQ-RFVKPQRRPCLTDFCRELT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYDSYRW 120
            I        G    +   ++ ++       ++G+ +   +D       + ++       
Sbjct: 64  HIAQADVDSAG-SLPQVWAQLERWLEQHAPRLVGWSSWGDYDRRQLEQEWRQHQL----T 118

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           S   G    +L                 P      ++ +L  L           H A  D
Sbjct: 119 SLLQGTPHLNLKQAFAKARQL-------PRPVGLHSALQLAGLQFQ-----GAQHRALTD 166

Query: 181 VYATLALV 188
              T  L+
Sbjct: 167 ARNTARLL 174


>gi|66043831|ref|YP_233672.1| oligoribonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|75503630|sp|Q4ZYY8|ORN_PSEU2 RecName: Full=Oligoribonuclease
 gi|63254538|gb|AAY35634.1| Exonuclease [Pseudomonas syringae pv. syringae B728a]
 gi|330971545|gb|EGH71611.1| oligoribonuclease [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 178

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  AE   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NWFHYR 129


>gi|226493850|ref|NP_001151909.1| exonuclease [Zea mays]
 gi|195650883|gb|ACG44909.1| exonuclease [Zea mays]
          Length = 302

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 52/197 (26%), Gaps = 32/197 (16%)

Query: 1   MTNHFVIYDYETF-----GRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPD 54
           M +  V +D ET      G         +F  + V  R+  ++ S +          L  
Sbjct: 3   MRDEIVFFDVETTAPSAAGPGRWW--LLEFGAILVCPRKLVEVGSYDTL---IRPGDL-S 56

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             +   T       +       + + +I            G+N  RFD         R  
Sbjct: 57  AVSRRFTDDVEAAIMASAPPFKDVADKIFDILD--GRVWAGHNIQRFD-----CPRIREA 109

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
           +              D L+V+ A +                   K+  LA   GI     
Sbjct: 110 FADIGRPAPEPVGVIDSLNVLAAHFGRRA------------GDLKMATLATYFGIG-KQK 156

Query: 175 HDAKADVYATLALVWLI 191
           H    D    L ++   
Sbjct: 157 HRGLDDARMNLEVLKHC 173


>gi|291613511|ref|YP_003523668.1| Exonuclease RNase T and DNA polymerase III [Sideroxydans
           lithotrophicus ES-1]
 gi|291583623|gb|ADE11281.1| Exonuclease RNase T and DNA polymerase III [Sideroxydans
           lithotrophicus ES-1]
          Length = 181

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            N+ V  D E  G     DR  + A V  D +   +    V     +D  L   D     
Sbjct: 5   QNNLVWIDMEMTGLLPDTDRIIEVALVVTDSELNTVAEAPVLVVHQSDSVLDGMDNWNKS 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    K     + +A    ++  F        T  +  N+I  D  +      +  
Sbjct: 65  THGKSGLIDKVKASTLDDAMVEAQMLAFLQEHVPTRTSPMCGNSICQDRRFLARWMPKLE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 DYFHYR 130


>gi|262368659|ref|ZP_06061988.1| ribonuclease T [Acinetobacter johnsonii SH046]
 gi|262316337|gb|EEY97375.1| ribonuclease T [Acinetobacter johnsonii SH046]
          Length = 219

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 31/199 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +  + + +            P +    D  ++   G
Sbjct: 23  VVVDVETAGFNAQTDALLEIAAIPIIYNEEGQFVPGPAHHAHINPFEGANLDRRSLDFIG 82

Query: 63  ITP------QKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNF 114
           I P        A  +        + +++     N    ++  +N  FD  + +    R  
Sbjct: 83  IDPFNPMRMAMAEDEKTALKRIFKAVNEVRRQQNCTHAVLVGHNAHFDLGFVQAAIARTG 142

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172
                    N    + + D +          +             L    +  GIE    
Sbjct: 143 -----TKNQNPFHSFSVFDTVTLSAVMFGQTV-------------LAKSCIQAGIEFDGR 184

Query: 173 NAHDAKADVYATLALVWLI 191
            AH A  D   T  L   I
Sbjct: 185 EAHSALYDTQKTAELFCYI 203


>gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
 gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
          Length = 309

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  E +E       KP +     P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLI-KPKEMRFM-PINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P     + +   +   +I  +F+     ++  +N  FD    R+             ++
Sbjct: 57  RPHMVQDE-LEFDKIWGKIKGYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                ++ +  M+    F  +              +L  +    G +    HDA AD  A
Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTVNNFLGYKF-KHHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|269968559|ref|ZP_06182563.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269826843|gb|EEZ81173.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 103

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 17/104 (16%)

Query: 3   NHFVIYDYE----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           N  V +D E          + G         +     +D    +I     ++ KP  D +
Sbjct: 4   NRIVCFDLEMCCWNENGVGSTG------EIIEVGLAEIDLSKGEIVKRAQYYVKPEHDEV 57

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY 96
                  +TGITP+K  + G    E  + + + F   N     +
Sbjct: 58  -SLFCAELTGITPRKIEKQGRPLEEVLKSMVKNFGGRNKIFASW 100


>gi|262403997|ref|ZP_06080552.1| hypothetical protein VOA_001985 [Vibrio sp. RC586]
 gi|262349029|gb|EEY98167.1| hypothetical protein VOA_001985 [Vibrio sp. RC586]
          Length = 156

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 10/132 (7%)

Query: 12  TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71
           T G         +     +D     I     +F KP  D +       +TGITP+K  + 
Sbjct: 3   TTG------EIIEVGLAEIDLSAGTIVKRAQYFVKPEKDEI-SLFCAELTGITPRKIEKQ 55

Query: 72  GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131
           G   AE  + + + F   N     +     DD    N             + N  + + +
Sbjct: 56  GRPLAEVLQSMVKNFGGSNKIYASW---GRDDRILINECREKGIPVPFQEFLNLATLYRI 112

Query: 132 LDVMRAIYAFSP 143
              ++       
Sbjct: 113 QHRLKDKRIGHR 124


>gi|145223130|ref|YP_001133808.1| oligoribonuclease [Mycobacterium gilvum PYR-GCK]
 gi|145215616|gb|ABP45020.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium gilvum
           PYR-GCK]
          Length = 214

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 56/206 (27%), Gaps = 44/206 (21%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  V  D E  G D+  D   + A +  D +   +          A+D   D     +T 
Sbjct: 6   DELVWIDCEMTGLDLKTDLLIEIAVLVTDSELNILGDGLDVVIH-AEDSALDSMIDVVT- 63

Query: 63  ITPQKALRDGVVE-----------AE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
              Q   + G++E           AE      I +      T  +  N+I  D  +    
Sbjct: 64  ---QMHTKSGLIEEVRASTVDVATAEDMVMTYIREHVRQAKTAPLAGNSIATDRGFLARD 120

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
             +   D Y        S    L        +                            
Sbjct: 121 MPK--LDDYLHYRMIDVSSIKELCRRWYPRIYFG------------------------QP 154

Query: 170 EHVNAHDAKADVYATLALVWLIREKK 195
           E   AH A AD++ ++  +   R+  
Sbjct: 155 EKGLAHRALADIHESIRELRYYRQTA 180


>gi|170700979|ref|ZP_02891961.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
          ambifaria IOP40-10]
 gi|170134119|gb|EDT02465.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
          ambifaria IOP40-10]
          Length = 206

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDV 51


>gi|15900868|ref|NP_345472.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae TIGR4]
 gi|111657353|ref|ZP_01408111.1| hypothetical protein SpneT_02001430 [Streptococcus pneumoniae
           TIGR4]
 gi|116515938|ref|YP_816361.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae D39]
 gi|148984737|ref|ZP_01818005.1| exonuclease [Streptococcus pneumoniae SP3-BS71]
 gi|148988438|ref|ZP_01819885.1| exonuclease [Streptococcus pneumoniae SP6-BS73]
 gi|149002547|ref|ZP_01827481.1| exonuclease [Streptococcus pneumoniae SP14-BS69]
 gi|149006328|ref|ZP_01830040.1| exonuclease [Streptococcus pneumoniae SP18-BS74]
 gi|149019585|ref|ZP_01834904.1| exonuclease [Streptococcus pneumoniae SP23-BS72]
 gi|168483063|ref|ZP_02708015.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC1873-00]
 gi|168491083|ref|ZP_02715226.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC0288-04]
 gi|168494423|ref|ZP_02718566.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC3059-06]
 gi|168575656|ref|ZP_02721592.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           MLV-016]
 gi|169834430|ref|YP_001694438.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225854497|ref|YP_002736009.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae JJA]
 gi|225858787|ref|YP_002740297.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae 70585]
 gi|237650859|ref|ZP_04525111.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI
           1974]
 gi|237822226|ref|ZP_04598071.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI
           1974M2]
 gi|307127457|ref|YP_003879488.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           670-6B]
 gi|14972467|gb|AAK75112.1| exonuclease [Streptococcus pneumoniae TIGR4]
 gi|116076514|gb|ABJ54234.1| exonuclease [Streptococcus pneumoniae D39]
 gi|147759484|gb|EDK66476.1| exonuclease [Streptococcus pneumoniae SP14-BS69]
 gi|147762105|gb|EDK69067.1| exonuclease [Streptococcus pneumoniae SP18-BS74]
 gi|147923128|gb|EDK74243.1| exonuclease [Streptococcus pneumoniae SP3-BS71]
 gi|147926119|gb|EDK77193.1| exonuclease [Streptococcus pneumoniae SP6-BS73]
 gi|147930960|gb|EDK81940.1| exonuclease [Streptococcus pneumoniae SP23-BS72]
 gi|168996932|gb|ACA37544.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172043421|gb|EDT51467.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC1873-00]
 gi|183574623|gb|EDT95151.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC0288-04]
 gi|183575623|gb|EDT96151.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578481|gb|EDT99009.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           MLV-016]
 gi|225720810|gb|ACO16664.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae 70585]
 gi|225723767|gb|ACO19620.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae JJA]
 gi|301799966|emb|CBW32552.1| putative exonuclease [Streptococcus pneumoniae OXC141]
 gi|306484519|gb|ADM91388.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           670-6B]
 gi|332075608|gb|EGI86076.1| exonuclease family protein [Streptococcus pneumoniae GA17545]
 gi|332201459|gb|EGJ15529.1| exonuclease family protein [Streptococcus pneumoniae GA47368]
 gi|332202848|gb|EGJ16917.1| exonuclease family protein [Streptococcus pneumoniae GA41317]
          Length = 196

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R   +I++ + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +      +F    +  +IGYN  + D                  
Sbjct: 58  TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYESFLESDQ 170


>gi|309812148|ref|ZP_07705906.1| oligoribonuclease [Dermacoccus sp. Ellin185]
 gi|308433835|gb|EFP57709.1| oligoribonuclease [Dermacoccus sp. Ellin185]
          Length = 209

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
          T+  V  D E  G D+  D   + A +  D +  ++        KP  
Sbjct: 12 TDRIVWIDCEMTGLDLENDALIEVAALVTDFELNQLGDGVDVVIKPEP 59


>gi|262402653|ref|ZP_06079214.1| ribonuclease T [Vibrio sp. RC586]
 gi|262351435|gb|EEZ00568.1| ribonuclease T [Vibrio sp. RC586]
          Length = 224

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 80  IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTAALSGLAFGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 181 AHSALYDTQKTAELFCTIVNR 201


>gi|261211954|ref|ZP_05926240.1| ribonuclease T [Vibrio sp. RC341]
 gi|260838562|gb|EEX65213.1| ribonuclease T [Vibrio sp. RC341]
          Length = 224

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 80  IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTAALSGLAFGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 181 AHSALYDTQKTAELFCTIVNR 201


>gi|94311778|ref|YP_584988.1| exonuclease [Cupriavidus metallidurans CH34]
 gi|93355630|gb|ABF09719.1| 3'-5' Exonuclease [Cupriavidus metallidurans CH34]
          Length = 194

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 16/139 (11%)

Query: 1   MTNHFVIYDYETF-------GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
           M    ++ D E         G ++     A+   V V      ++  + F  +P  +   
Sbjct: 1   MNAPVLVVDLEATCSEDMAAGWEMET---AEIGAVWVRGNGTVLDHFQSF-VRPVVNPQL 56

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIF 110
                 +TGI+        +     + ++ QF      P +  + +           +  
Sbjct: 57  TAFFTNLTGISQSDVDDAPL-FTVAAEQLRQFVERYQMPGSIWVSWGAWDARQLLRDSAR 115

Query: 111 YRNFYDSYRWSWDNGNSRW 129
           YR   +       NG   +
Sbjct: 116 YR-IAEPIALPHQNGKRLF 133


>gi|71733293|ref|YP_272859.1| oligoribonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298484922|ref|ZP_07003021.1| Oligoribonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|123638427|sp|Q48P10|ORN_PSE14 RecName: Full=Oligoribonuclease
 gi|71553846|gb|AAZ33057.1| oligoribonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298160609|gb|EFI01631.1| Oligoribonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330886590|gb|EGH20251.1| oligoribonuclease [Pseudomonas syringae pv. mori str. 301020]
          Length = 178

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  AE   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NWFHYR 129


>gi|88704503|ref|ZP_01102217.1| oligoribonuclease [Congregibacter litoralis KT71]
 gi|88701554|gb|EAQ98659.1| oligoribonuclease [Congregibacter litoralis KT71]
          Length = 188

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 15/128 (11%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPDP 55
           + +  D E  G D   DR  + A +  D     +          ++       +      
Sbjct: 10  NLIWVDMEMTGLDPDGDRVIEIATIVTDSDLHPLAEGPVIAIHQSDAVLEAMDEWNTSHH 69

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112
            A  +      +     + EAE +R    F           +  N+I  D  +       
Sbjct: 70  GASGLC----DRVRASVIDEAEATRLTIAFLENWVPAGASPMCGNSICQDRRFMARHLPE 125

Query: 113 NFYDSYRW 120
                +  
Sbjct: 126 LESYFHYR 133


>gi|330965973|gb|EGH66233.1| oligoribonuclease [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 178

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  AE   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NWFHYR 129


>gi|258622020|ref|ZP_05717049.1| ribonuclease T [Vibrio mimicus VM573]
 gi|258627109|ref|ZP_05721905.1| ribonuclease T [Vibrio mimicus VM603]
 gi|262171988|ref|ZP_06039666.1| ribonuclease T [Vibrio mimicus MB-451]
 gi|258580627|gb|EEW05580.1| ribonuclease T [Vibrio mimicus VM603]
 gi|258585773|gb|EEW10493.1| ribonuclease T [Vibrio mimicus VM573]
 gi|261893064|gb|EEY39050.1| ribonuclease T [Vibrio mimicus MB-451]
          Length = 224

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 20  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 80  IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 140 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 181 AHSALYDTQKTAELFCTIVNQ 201


>gi|221231753|ref|YP_002510905.1| exonuclease [Streptococcus pneumoniae ATCC 700669]
 gi|220674213|emb|CAR68744.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669]
          Length = 196

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R   +I++ + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +      +F    +  +IGYN  + D                  
Sbjct: 58  TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYESFLESDQ 170


>gi|195392333|ref|XP_002054812.1| GJ24646 [Drosophila virilis]
 gi|194152898|gb|EDW68332.1| GJ24646 [Drosophila virilis]
          Length = 187

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 15/47 (31%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           V  D E  G  +  D+  + A +  D+Q         F  +     
Sbjct: 14 IVWMDLEMTGLSIDKDQILEVACIITDKQLNIKAECLCFAIRHPPQV 60


>gi|240136987|ref|YP_002961456.1| hypothetical protein MexAM1_META1p0217 [Methylobacterium extorquens
           AM1]
 gi|240006953|gb|ACS38179.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens AM1]
          Length = 297

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 47/183 (25%), Gaps = 29/183 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET   +   D         +      +   E    +P       P  + + GI P
Sbjct: 4   VAIDFET--ANERRDSACAVGLAWI-EGGRVVRR-ESRLIRP-PQLRFSPGNIRVHGILP 58

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      E    I +F    +  ++  +N  FD                   W   
Sbjct: 59  ADVRDAP-TFPEV---IAEFLPDLSGGLMLAHNAGFDMGVLAASLAA---------WGEP 105

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                    ++      PD               L  +A   GI   + HDA  D +A  
Sbjct: 106 VPDMAGHCTLQIARRVFPD----------PAGHGLAKVASRLGIRFEH-HDAGEDAFACA 154

Query: 186 ALV 188
            + 
Sbjct: 155 EIA 157


>gi|163842028|ref|YP_001626433.1| oligoribonuclease [Renibacterium salmoninarum ATCC 33209]
 gi|162955504|gb|ABY25019.1| oligoribonuclease [Renibacterium salmoninarum ATCC 33209]
          Length = 215

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 35/125 (28%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
           +   V  D E  G D+  D   + A +  D +   ++           D +  P+A  + 
Sbjct: 5   SERIVWIDCEMTGLDLEADALIEVAVLITDSELNILDDGV--------DVVIKPDAAALA 56

Query: 61  --------------------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100
                                G+T   A    +        I +F   P    +G N+I 
Sbjct: 57  QMNDFVRNMHTTSKLLDELPNGLT--MAAAQDI----VLTYIKKFLPDPGKAQLGGNSIG 110

Query: 101 FDDYY 105
            D  +
Sbjct: 111 TDKMF 115


>gi|251780447|ref|ZP_04823367.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243084762|gb|EES50652.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 204

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 23/173 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
             + +D ET           Q + + VD   +  I + + FF    +    +P A  I G
Sbjct: 2   KLLFFDTETTSIKP--GSICQLSYITVDASSKPQITTGKNFFFTVDE---MNPSAQEIHG 56

Query: 63  ITPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            + +K   L DG    +      + F   +   +  +N+ FD  + ++       D    
Sbjct: 57  FSLEKLYELSDGQYFEDLVPEFFKDFIEAD--FLIGHNVNFDIRFLKHELSLLGEDFLPK 114

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                               +  D  + P  +    + KL+++    GI    
Sbjct: 115 HS-------------FCTMIYYKDICKMPKANGEIKNPKLEEVVNFLGITKDQ 154


>gi|66472518|ref|NP_001018450.1| 3'-5' exoribonuclease 1 [Danio rerio]
 gi|63100708|gb|AAH95343.1| Exoribonuclease 1 [Danio rerio]
 gi|182888732|gb|AAI64140.1| Eri1 protein [Danio rerio]
          Length = 337

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 47/171 (27%), Gaps = 15/171 (8%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59
             + D+E                +F  V +D    E ++S +  + KP          V 
Sbjct: 118 ICVVDFEATCEENNPPDYLHEIIEFPMVLIDTHTLEIVDSFQE-YVKPVLHPQLSEFCVK 176

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIG-YNNIRFDDYYSRNIFYR 112
           +TGIT +          +  +R   +       +      +   +       +++    R
Sbjct: 177 LTGITQEMVDEA-KTFHQVLKRAISWLQEKELGTKYKYMFLTDGSWDMGKFLHTQCKLSR 235

Query: 113 NFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
             Y  +   W N    + +   V R                DG     L D
Sbjct: 236 IRYPQFARKWINIRKSYGNFYKVPRTQTKLICMLENLGMEYDGRPHCGLDD 286


>gi|59711532|ref|YP_204308.1| ribonuclease T [Vibrio fischeri ES114]
 gi|197335112|ref|YP_002155688.1| ribonuclease T [Vibrio fischeri MJ11]
 gi|59479633|gb|AAW85420.1| ribonuclease T (RNase T) [Vibrio fischeri ES114]
 gi|197316602|gb|ACH66049.1| ribonuclease T [Vibrio fischeri MJ11]
          Length = 222

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 55/201 (27%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D Q      +T  F   P +    + EA+   G
Sbjct: 21  VVIDVETAGFNAKTDALLEICAVTLAMDEQGNLKPATTIHFHVTPFEGANIEKEALEFNG 80

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I +              I+  +N  FD  +      R   
Sbjct: 81  IRDPFSPLRGAVTEDVALKEIFKLVRKEQKQHDCQRAIMVAHNAHFDHSFVMEAAARTKL 140

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--N 173
                        +   D            +             L       G++     
Sbjct: 141 K------RIPFHPFCTFDTAAISGLALGQTV-------------LAKACKTAGMDFDGKE 181

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 182 AHSALYDTEKTAELFCRIVNK 202


>gi|163849777|ref|YP_001637820.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
 gi|163661382|gb|ABY28749.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
          Length = 297

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 48/189 (25%), Gaps = 29/189 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET   +   D         +      +   E    +P       P  + + GI P
Sbjct: 4   VAIDFET--ANERRDSACAVGLAWI-EGGRVVRR-ESRLIRP-PQLRFSPGNIRVHGILP 58

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      E    I +F    +  ++  +N  FD                   W   
Sbjct: 59  ADVRDAP-TFPEV---IAEFLPDLSGGLMLAHNAGFDMGVLAASLAA---------WGEP 105

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                    ++      PD               L  +A   GI   + HDA  D +A  
Sbjct: 106 VPDMAGHCTLQIARRVFPD----------PAGHGLAKVAGRLGIRFEH-HDAGEDAFACA 154

Query: 186 ALVWLIREK 194
            +      +
Sbjct: 155 EIALAALHE 163


>gi|254509159|ref|ZP_05121258.1| ribonuclease T [Vibrio parahaemolyticus 16]
 gi|219547910|gb|EED24936.1| ribonuclease T [Vibrio parahaemolyticus 16]
          Length = 213

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D   + +  ST  F  +P +    + EA+   G
Sbjct: 14  VVIDVETAGFNAKTDALLEICAVTLKMDDSGDLQPASTIHFHVEPFEGANIEKEALDFIG 73

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           +  P   LR  + E+E  + I++        +  +  II  +N +FD  +      R+  
Sbjct: 74  LRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDHSFVMEASDRSKL 133

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +          L  +       +                     A     ++  AH
Sbjct: 134 KRVPFHPFATFDTATLSGLAYGQTVLAKACK-----------------AAGMEFDNKEAH 176

Query: 176 DAKADVYATLALVWLIREK 194
            A  D   T  L   I  K
Sbjct: 177 SALYDTKKTAELFCGIVNK 195


>gi|126334116|ref|XP_001366655.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 696

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 63/200 (31%), Gaps = 14/200 (7%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            +I D+E+     G+        +F  V ++    +IES    + +P +  +     + +
Sbjct: 38  LIIIDFESTCWNDGKHHYSQEIIEFPAVLLNTLTGEIESEFQTYVQPEEHPILSKFCIEL 97

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCII--GYNNIRFDDYYSRNIFYRNF 114
           TGI   +   +GV      ++F + IH               NN   +      + + ++
Sbjct: 98  TGIKQAQV-DEGVPLKICLSQFCKWIHLIQQQKKITFAPSITNNSASEVKSCAFVTWSDW 156

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                  ++    +      + +          +  R     S  LQ+L +         
Sbjct: 157 DLGVCLEYECRRKQLRKPIFLNSWIDLRATYKLFYRRKPKGLSGALQELGIEFS---GRE 213

Query: 175 HDAKADVYATLALVWLIREK 194
           H    D   T  L W +   
Sbjct: 214 HSGLDDSRNTAHLAWRMIRD 233


>gi|322788644|gb|EFZ14245.1| hypothetical protein SINV_00413 [Solenopsis invicta]
          Length = 189

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           V  D E  G DV  D   + A +  D+    I  
Sbjct: 21 IVWIDLEMTGLDVDKDHILEIACLVTDKNLNVISE 55


>gi|315656346|ref|ZP_07909235.1| oligoribonuclease [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492905|gb|EFU82507.1| oligoribonuclease [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 198

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 19/128 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--------- 56
           V  D E  G D+ +D   + A +  D +   ++S      KP+   +             
Sbjct: 2   VWIDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKPSATAMNHMGEFVREMHTK 61

Query: 57  ----AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
               A   TG++ ++A R      +    + +    P    +  N++  D  +       
Sbjct: 62  SGLLAKLDTGLSVEEAGR------QVLDYVKRLVPEPGKAQLAGNSVHSDKAFLAKQMPE 115

Query: 113 NFYDSYRW 120
                +  
Sbjct: 116 LINWLHYR 123


>gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 3502]
 gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
          Length = 309

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  E +E       KP +     P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLI-KPKEMRFM-PINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P     + +   +   +I  +F+     ++  +N  FD    R+             ++
Sbjct: 57  RPHMVQDE-LEFDKIWGKIKGYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                ++ +  M+    F  +              +L  +    G +    HDA AD  A
Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTVNNFLGYKF-KHHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|320529722|ref|ZP_08030801.1| exonuclease [Selenomonas artemidis F0399]
 gi|320138083|gb|EFW29986.1| exonuclease [Selenomonas artemidis F0399]
          Length = 221

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 27/204 (13%)

Query: 1   MTNHFVIYDYETF--GRDVA------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           M    ++ D E    G++             +   VR+  ++ + +  + + C   +  L
Sbjct: 1   MRMKHIVVDLEMNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVC--PEYGL 58

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +TGIT +K      V AE  +    +     T I  Y+    D    R    R
Sbjct: 59  VKKHITELTGITQEKVSGQ-RVFAESFKNFVDWIGASETKI--YSWSMSDIKQLRKEC-R 114

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                +  +W +          MR +        +    +  A    L  +         
Sbjct: 115 LKVPDFDVNWLD----------MRWVDLQQAFDDRLGLHNSLALKHALGAMGRRF---EG 161

Query: 173 NAHDAKADVYATLALVWLIREKKP 196
             H A AD   T A++ L+++ + 
Sbjct: 162 TQHSALADAINTSAVLTLMQDDEK 185


>gi|148998570|ref|ZP_01826010.1| exonuclease [Streptococcus pneumoniae SP11-BS70]
 gi|225856651|ref|YP_002738162.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae P1031]
 gi|307067654|ref|YP_003876620.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Streptococcus pneumoniae AP200]
 gi|147755568|gb|EDK62615.1| exonuclease [Streptococcus pneumoniae SP11-BS70]
 gi|225725179|gb|ACO21031.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae P1031]
 gi|301794129|emb|CBW36537.1| putative exonuclease [Streptococcus pneumoniae INV104]
 gi|306409191|gb|ADM84618.1| DNA polymerase III, epsilon subunit-like 3'-5' exonuclease
           [Streptococcus pneumoniae AP200]
 gi|332204995|gb|EGJ19060.1| exonuclease family protein [Streptococcus pneumoniae GA47901]
          Length = 196

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R   +I++ + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +      +F    +  +IGYN  + D                  
Sbjct: 58  TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYESFLESDQ 170


>gi|71908614|ref|YP_286201.1| oligoribonuclease [Dechloromonas aromatica RCB]
 gi|71848235|gb|AAZ47731.1| Exonuclease [Dechloromonas aromatica RCB]
          Length = 184

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
          N+ V  D E  G +   DR  + A V  + + E +  +  +    +D+ L
Sbjct: 6  NNLVWLDMEMTGLNPDGDRIIEMAMVVTNSELEMVAESPSWVVHQSDEIL 55


>gi|254252896|ref|ZP_04946214.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia dolosa
          AUO158]
 gi|124895505|gb|EAY69385.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia dolosa
          AUO158]
          Length = 207

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51


>gi|194397817|ref|YP_002037629.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae G54]
 gi|225861122|ref|YP_002742631.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298231026|ref|ZP_06964707.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298253983|ref|ZP_06977569.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502997|ref|YP_003724937.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           TCH8431/19A]
 gi|194357484|gb|ACF55932.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae G54]
 gi|225727595|gb|ACO23446.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238592|gb|ADI69723.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389271|gb|EGE87616.1| exonuclease family protein [Streptococcus pneumoniae GA04375]
          Length = 196

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 60/196 (30%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R   +I++ + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQKHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +      +F    +  +IGYN  + D                 +
Sbjct: 58  TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAE-------YGLDY 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           S       +D     R+                G  + KLQ +A   G +   +H++  D
Sbjct: 108 SQQYKVDLYDEAFERRSS------------DLHGIANLKLQTVASFLGFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYESFLESDQ 170


>gi|213584484|ref|ZP_03366310.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 57

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 45/57 (78%)

Query: 72  GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
           G  EA F+RRIH  F+VP TC++GYNN+RFDD  +RNIFYRNFYD Y WSW + NSR
Sbjct: 1   GENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 57


>gi|301162194|emb|CBW21739.1| putative exonuclease [Bacteroides fragilis 638R]
          Length = 175

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 51/198 (25%), Gaps = 29/198 (14%)

Query: 1   MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   F   D+ET  G   +        G+      E  +        P ++Y      + 
Sbjct: 1   MNLSFAAIDFETATGYMESACAV----GIVTVTDGEITDEYYSLIQPPENEYW--RANML 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GITP          A     + +        ++  +N +FD    +N       D   
Sbjct: 55  VHGITPGMTESLPGFHA-IYPEVKKRLQ---GKVVVAHNEQFDRNVLKNTMRMYGLDYDE 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            S              R   +             G     L       GIE    H+A +
Sbjct: 111 LSLPERWE-----CTCRIYRSL------------GYKPVNLSACCEREGIEL-KHHEALS 152

Query: 180 DVYATLALVWLIREKKPK 197
           D      L     EK   
Sbjct: 153 DARGCAKLYLNFLEKYRP 170


>gi|254558840|ref|YP_003065935.1| hypothetical protein METDI0201 [Methylobacterium extorquens DM4]
 gi|254266118|emb|CAX21870.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens DM4]
          Length = 297

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 47/183 (25%), Gaps = 29/183 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET   +   D         +      +   E    +P       P  + + GI P
Sbjct: 4   VAIDFET--ANERRDSACAVGLAWI-EGGRVVRR-ESRLIRP-PQLRFSPGNIRVHGILP 58

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      E    I +F    +  ++  +N  FD                   W   
Sbjct: 59  ADVRDAP-TFPEV---IAEFLPDLSGGLMLAHNAGFDMGVLAASLAA---------WGEP 105

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                    ++      PD               L  +A   GI   + HDA  D +A  
Sbjct: 106 VPDMAGHCTLQIARRVFPD----------PAGHGLAKVAGRLGIRFEH-HDAGEDAFACA 154

Query: 186 ALV 188
            + 
Sbjct: 155 EIA 157


>gi|218672255|ref|ZP_03521924.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli GR56]
          Length = 197

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 46/170 (27%), Gaps = 29/170 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                I D+ET   +             ++    ++   E    +P  D       + I 
Sbjct: 1   MKTIAI-DFET--ANEQRGSACSVGLAWIEEG--RVTRVEERLIRPR-DMRFSGMNIAIH 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+          E     H  F       +  +N  FD        +R   D YR S
Sbjct: 55  GIRPEDVEDAPE-FPEVMDEFHDDFR---GATMIAHNAAFDFSV-----WRASLDLYRQS 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           +            +  + +       WP       S +L  +A   G   
Sbjct: 106 Y----------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGPAF 141


>gi|220934255|ref|YP_002513154.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219995565|gb|ACL72167.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 181

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           ++    D E  G D   D   + A +  D+    +  
Sbjct: 5  PDNLAWIDLEMTGLDTDNDYIIEIATLVTDKDLNILAE 42


>gi|227502443|ref|ZP_03932492.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
 gi|306835006|ref|ZP_07468054.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
 gi|227076812|gb|EEI14775.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
 gi|304569114|gb|EFM44631.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC
           49726]
          Length = 479

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 9/111 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V    +T G   +  R      V  D   +  +       KP  D  P      + G+T
Sbjct: 113 YVALTLQTTGIHPSTGRIVTIDAVAFDNAGDIGQRFHAVL-KPDIDAGPH----HLHGLT 167

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
                +     +   + + +     +   +  ++I +   +      R   
Sbjct: 168 VADIEQAPA-FSRILKSLDKLI---DGRTLVVHDIPYTWGFIVAEARRAMM 214


>gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str.
           Langeland]
 gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. Langeland]
 gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. 230613]
          Length = 309

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  E +E       KP +     P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLI-KPKEMRFM-PINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P     + +   +   +I  +F+     ++  +N  FD    R+             ++
Sbjct: 57  RPHMVQDE-LEFDKIWGKIKGYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                ++ +  M+    F  +              +L  +    G +    HDA AD  A
Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTVNNFLGYKF-KHHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|332305263|ref|YP_004433114.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172592|gb|AEE21846.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 181

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + V  D E  G    +D   + A +  D     +    V     +D+ L   +   +  
Sbjct: 6   QNLVWIDMEMTGLHPEVDVVLEIATIVTDANLNILAEGPVLAIHQSDEVLNNMNQWCIDT 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   ++  +  + E        +F           +  N I  D  +          
Sbjct: 66  HGKSGLTERCRKSTIDEQTAVAETIRFLEKYVPKGASPLCGNTIGQDRRFMVKYMPELEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|156551267|ref|XP_001600928.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis]
          Length = 224

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 7/123 (5%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDY-LPDPEAVFITG 62
            V  D E  G DV  +R  + A +  D     I +  +    +P  +    +       G
Sbjct: 46  IVWIDMEMSGLDVDKNRILEIACLITDENLNVISDEFQAVLYQPDTELDTMNDWCQNNHG 105

Query: 63  IT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            T       +    E      +  F         C +  N++  D  + R     +    
Sbjct: 106 KTGLIDACKKSAETEDAVDINLLYFMMKYIPKGKCPLAGNSVYVDRLFLRKYMPVSNDYI 165

Query: 118 YRW 120
           +  
Sbjct: 166 HYR 168


>gi|253563502|ref|ZP_04840959.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
 gi|251947278|gb|EES87560.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
          Length = 175

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 51/198 (25%), Gaps = 29/198 (14%)

Query: 1   MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   F   D+ET  G   +        G+      E  +        P ++Y      + 
Sbjct: 1   MNLSFAAIDFETATGYMESACAV----GIVTVTDGEITDEYYSLIQPPENEYW--RANML 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GITP          A     + +        ++  +N +FD    +N       D   
Sbjct: 55  VHGITPGMTESLPGFHA-IYPEVKKRLQ---GNVVVAHNEQFDRNVLKNSMRMYGLDYDE 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            S              R   +             G     L       GIE    H+A +
Sbjct: 111 LSLPERWE-----CTCRIYRSL------------GYKPVNLSACCEREGIEL-KHHEALS 152

Query: 180 DVYATLALVWLIREKKPK 197
           D      L     EK   
Sbjct: 153 DARGCAKLYLNFLEKYRP 170


>gi|152965734|ref|YP_001361518.1| exonuclease RNase T and DNA polymerase III [Kineococcus
           radiotolerans SRS30216]
 gi|151360251|gb|ABS03254.1| Exonuclease RNase T and DNA polymerase III [Kineococcus
           radiotolerans SRS30216]
          Length = 218

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 38/136 (27%), Gaps = 33/136 (24%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M+    V +D ET G      +  + A VR +      E    FF  P ++   +P A+ 
Sbjct: 1   MSKRPLVFFDTETTGLGPGR-QAWEIALVRREPDG--TERPLEFF-LPIEEVRAEPGALD 56

Query: 60  I--------TGI-----------TPQKALRDGVVEAE-------FSRRIHQFFSVP--NT 91
           I         GI           T  K         +          +  +  +      
Sbjct: 57  IGRYYARHPHGIAISTIPAQPPFTTPKPADAPRPVPQEPGPVVLAVPKAARLLAQWTSGA 116

Query: 92  CIIGYNNIRFDDYYSR 107
            I+G N         R
Sbjct: 117 TIVGANPAFDVQILER 132


>gi|241950803|ref|XP_002418124.1| Oligoribonuclease, mitochondrial precursor, putative; exonuclease,
           putative [Candida dubliniensis CD36]
 gi|223641463|emb|CAX43424.1| Oligoribonuclease, mitochondrial precursor, putative [Candida
           dubliniensis CD36]
          Length = 257

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 23/136 (16%)

Query: 2   TNHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIES---------TEVFFCKPADDY 51
               V  D E  G DV  D    +   +  +   + ++           +    K  +  
Sbjct: 46  KKPLVWVDCEMTGLDVFGDDNIIEICCIITNEDLDIVDEKGYESTIYYPKSRLDKMNEWC 105

Query: 52  LPDPEAVFITGIT--PQKALRDG-----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
           +         G +   +K L +       VE E  + I ++     T ++  N++  D +
Sbjct: 106 I------ETHGKSGLTEKILANPDRKLSAVEDELLQYIKKYVPEIRTGLLAGNSVHMDRF 159

Query: 105 YSRNIFYRNFYDSYRW 120
           +    F +     +  
Sbjct: 160 FMMKEFPKVIDHLHYR 175


>gi|291409160|ref|XP_002720873.1| PREDICTED: histone mRNA 3 end-specific exonuclease-like
           [Oryctolagus cuniculus]
          Length = 344

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 125 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEANTQLSDFCINL 184

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIG-YNNIRFDDYYSRNIFYRN 113
           TGIT  +  +      +  R++  +            CI+   +         +    R 
Sbjct: 185 TGITQDQVDKAD-TFPQVLRKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCQLSRL 243

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 244 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 293


>gi|237798271|ref|ZP_04586732.1| oligoribonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021123|gb|EGI01180.1| oligoribonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 178

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  A+   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTISMADAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|6323088|ref|NP_013160.1| Rex2p [Saccharomyces cerevisiae S288c]
 gi|1730818|sp|P54964|ORN_YEAST RecName: Full=Oligoribonuclease, mitochondrial; Flags: Precursor
 gi|1181280|emb|CAA64306.1| Ynt20 protein [Saccharomyces cerevisiae]
 gi|1360404|emb|CAA97590.1| YNT20 [Saccharomyces cerevisiae]
 gi|285813481|tpg|DAA09377.1| TPA: Rex2p [Saccharomyces cerevisiae S288c]
          Length = 269

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47
              V  D E  G D   DR  +   +  D     +       +S              K 
Sbjct: 53  KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +  +         G+T +    +  +   E E    I ++    N  ++  N++  D  
Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169

Query: 105 YSRNIFYRNFYDSYRW 120
           +    F +     +  
Sbjct: 170 FMVREFPKVIDHLFYR 185


>gi|289811457|ref|ZP_06542086.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 70

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 7/62 (11%)

Query: 7  IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
          I D ET G         + A V V      +            D    P+A+ I  IT  
Sbjct: 4  IIDTETCGL---QGGIVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEA 56

Query: 67 KA 68
            
Sbjct: 57 MV 58


>gi|170781928|ref|YP_001710260.1| oligoribonuclease [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156496|emb|CAQ01646.1| oligoribonuclease [Clavibacter michiganensis subsp. sepedonicus]
          Length = 206

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 11/128 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFI 60
           +  V  D E  G D+A+D   + A V  D     +++       P    L +       +
Sbjct: 6   DRLVWIDCEMTGLDLAIDELVEVAVVVTDFDLVPVDAGFTIVINPDPAALANMGEFVTEM 65

Query: 61  T---GITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
               G+  +  +  GV     E      + Q         I  N I  D  +      R 
Sbjct: 66  HRSSGLLDE--IPAGVSLADAEFAVLEYLLQHVPNGGKAPIAGNTIGTDRAFLAKYMPRV 123

Query: 114 FYDSYRWS 121
               +  S
Sbjct: 124 DAHLHYRS 131


>gi|76810706|ref|YP_334337.1| oligoribonuclease [Burkholderia pseudomallei 1710b]
 gi|76580159|gb|ABA49634.1| oligoribonuclease [Burkholderia pseudomallei 1710b]
          Length = 229

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 47 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 79


>gi|302672277|ref|YP_003832237.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
 gi|302396750|gb|ADL35655.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
          Length = 311

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/298 (11%), Positives = 82/298 (27%), Gaps = 48/298 (16%)

Query: 2   TNHFVIYDYETF---------GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
             +++I+D E           G+ +      +   V+++ + EKI        +P     
Sbjct: 1   MKNYIIFDLEWNQGDAPVVENGKTLNF-EIVEIGAVKLNEKKEKIGEF-SRLIRPQVFKQ 58

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +  +T +     G    + +    +F           +    D    +     
Sbjct: 59  MHRITGKLIHLTMEDL-ESGEPFTDVAD---EFLKWCGEDPQFCSWGPLDLTEFQRNLDF 114

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                                  R I  +    +   + DDG +   L  +     ++  
Sbjct: 115 FGMPLLSD---------------RPIAFYDVQKLYSIAFDDGKSRKALSTVVDEMQMDKD 159

Query: 173 -NAHDAKADVYATLALVWLI---------------REKKPKLFEYLYDYRNKNQLRKLID 216
              H A AD   T  +   +                + + +  +  +D   K   R+   
Sbjct: 160 IPFHRALADAEYTARIFRKLGDKVLQRVSFDTYVTPKTRKQEIKITFDNYFKYISREFDS 219

Query: 217 IQNMTPLVHVSGMFGA--SRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQ 272
            +++   + +         R+    +     + ++  SV  C L G M+    +   +
Sbjct: 220 KEDILENIEIMSTKCYLCHRNIRRKVKWFTPNSKHYYSVAYCELHGFMKSKVRIKKAE 277


>gi|224120530|ref|XP_002330965.1| predicted protein [Populus trichocarpa]
 gi|222872757|gb|EEF09888.1| predicted protein [Populus trichocarpa]
          Length = 219

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 15/115 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYLPDPE 56
            V  D E  G +  +DR  + A +  D             I  ++    +  +       
Sbjct: 41  LVWIDLEMTGLNTEVDRILEIACIITDGYLTKSVEGPDLVIHQSKECLDRMGEWCQSHHA 100

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
           A  +T     K L   + E +  +++ +F       +T +I  N++  D  + + 
Sbjct: 101 ASGLTN----KVLGSKITERDAEKQVIEFVKRHVGTHTPLIAGNSVYVDFLFLKK 151


>gi|326204418|ref|ZP_08194276.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           papyrosolvens DSM 2782]
 gi|325985450|gb|EGD46288.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           papyrosolvens DSM 2782]
          Length = 187

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 52/199 (26%), Gaps = 22/199 (11%)

Query: 5   FVIYDYETFGRDVA------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            +  D E    D             +   V   +   +I    V   +P  + +      
Sbjct: 2   LIFVDLEATCWDKNEKNKRPHAEIIEIGAVVTGQDLIEISKFSV-VIRPEIEPVLSDYCK 60

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFYD 116
            +TG++       G+        ++Q+          + Y    +D +  +    R+ Y 
Sbjct: 61  ELTGLSQTDVEN-GMEFNRAISHLYQWILKYENMENTVLYTWGDYDIFLLKRSLRRHKYK 119

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAH 175
           +            D L ++      +            ++S  L       G   H   H
Sbjct: 120 NK-----------DFLSIIHKGGLINLQEQFMKFTKLPSSSCNLVKALQIIGENYHGKMH 168

Query: 176 DAKADVYATLALVWLIREK 194
            +  D    + L   +   
Sbjct: 169 RSVDDAENMIKLYRYLNNN 187


>gi|212526340|ref|XP_002143327.1| RNA exonuclease Rex2, putative [Penicillium marneffei ATCC 18224]
 gi|210072725|gb|EEA26812.1| RNA exonuclease Rex2, putative [Penicillium marneffei ATCC 18224]
          Length = 189

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 38/133 (28%), Gaps = 25/133 (18%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF--- 59
            V  D E  G D   D+  Q      D Q + +E        P    +    P+A     
Sbjct: 10  LVWVDCEMTGLDPETDQILQICCFITDAQLQLLE--------PNGFEIVVHQPKAKLDAM 61

Query: 60  ------ITGIT--PQKAL----RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
                   G +   Q  L          ++    I ++     T ++  N+I  D  +  
Sbjct: 62  SQWCIDTHGKSGLTQAVLASTTDAATASSQLLAYIKRYVPEQRTALLAGNSIHADRAFLA 121

Query: 108 NIFYRNFYDSYRW 120
              Y    +   +
Sbjct: 122 KPPYSPILEWLHY 134


>gi|303240238|ref|ZP_07326757.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
 gi|302592148|gb|EFL61877.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio
           cellulolyticus CD2]
          Length = 223

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/126 (9%), Positives = 36/126 (28%), Gaps = 18/126 (14%)

Query: 2   TNHFVIYDYE-TFG-----------RDVALD----RPAQFAGVRVDRQWEKIESTEVFFC 45
              +++ D E + G                +       Q   + ++  ++ I+    F  
Sbjct: 34  KKCYIVLDLEFSTGYKYVNKDYAKTLFPKYEKRPAEIIQIGAIMLNHNYKIIDKFNKFIT 93

Query: 46  KPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
            P      +     +TG+  +      +   E      ++       + G++N     + 
Sbjct: 94  -PCIYQKINKYVTELTGLNDENLKN-NISFVECMDSFEKWIGKKEYILCGWSNSDQKVFE 151

Query: 106 SRNIFY 111
               ++
Sbjct: 152 DNFKYH 157


>gi|53712466|ref|YP_098458.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46]
 gi|60680667|ref|YP_210811.1| putative exonuclease [Bacteroides fragilis NCTC 9343]
 gi|265762628|ref|ZP_06091196.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
 gi|52215331|dbj|BAD47924.1| probable DNA polymerase III epsilon chain [Bacteroides fragilis
           YCH46]
 gi|60492101|emb|CAH06864.1| putative exonuclease [Bacteroides fragilis NCTC 9343]
 gi|263255236|gb|EEZ26582.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
          Length = 175

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 51/198 (25%), Gaps = 29/198 (14%)

Query: 1   MTNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M   F   D+ET  G   +        G+      E  +        P ++Y      + 
Sbjct: 1   MNLSFAAIDFETATGYMESACAV----GIVTVTDGEITDEYYSLIQPPENEYW--RANML 54

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GITP          A     + +        ++  +N +FD    +N       D   
Sbjct: 55  VHGITPGMTESLPGFHA-IYPEVKKRLQ---GNVVVAHNEQFDRNVLKNTMRMYGLDYDE 110

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            S              R   +             G     L       GIE    H+A +
Sbjct: 111 LSLPERWE-----CTCRIYRSL------------GYKPVNLSACCEREGIEL-KHHEALS 152

Query: 180 DVYATLALVWLIREKKPK 197
           D      L     EK   
Sbjct: 153 DARGCAKLYLNFLEKYRP 170


>gi|198283559|ref|YP_002219880.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666066|ref|YP_002426185.1| exodeoxyribonuclease X, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248080|gb|ACH83673.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518279|gb|ACK78865.1| exodeoxyribonuclease X, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 220

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 65/217 (29%), Gaps = 33/217 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET GR        + A + V      +E  E F  +       +  A+ +  I  
Sbjct: 4   LIFDTETTGR--VEPELIEAAWLAV-SDLRTLEVEEQFVQRYRPAKPIEMGAMAVHHILE 60

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +  L               F    +T  +  ++I +D                       
Sbjct: 61  EDLLESPPA--------SSFRLPEDTGYLVGHSIDYDWGVIG---------------KPD 97

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT- 184
             R     + R ++       Q       +   +             NAH A ADV    
Sbjct: 98  VKRICTYAMTRKLWPEVDSHSQSALMYHFSKDKRKTR------DNLKNAHSALADVKFCR 151

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           + L  +I   +P  +E L+++  + ++ + +      
Sbjct: 152 ILLNKVILSVRPNSWEDLWEFSERARIPETMPFGKHK 188


>gi|326427354|gb|EGD72924.1| oligoribonuclease [Salpingoeca sp. ATCC 50818]
          Length = 238

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 7/122 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D E  G DV+ +R  + A +  D     + S+        +  L   +    T  T 
Sbjct: 64  VWVDLEMSGLDVSRERILEMAMIITDADLNVVASSGTVVLHQPEHILESMDEWNTTHHTQ 123

Query: 66  ----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
               ++  +  + E +   ++ +          C +  +++  D  +      R     +
Sbjct: 124 SGLVERVRQSKLREWDVEDQMLKLLHEHCPEKRCPLAGSSVHVDRLFLLKYMPRFTDYLH 183

Query: 119 RW 120
             
Sbjct: 184 YR 185


>gi|298345320|ref|YP_003718007.1| exoribonuclease II [Mobiluncus curtisii ATCC 43063]
 gi|304390877|ref|ZP_07372829.1| oligoribonuclease [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|298235381|gb|ADI66513.1| exoribonuclease II [Mobiluncus curtisii ATCC 43063]
 gi|304325760|gb|EFL93006.1| oligoribonuclease [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 212

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 19/128 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--------- 56
           V  D E  G D+ +D   + A +  D +   ++S      KP+   +             
Sbjct: 16  VWIDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKPSATAMNHMGEFVREMHTK 75

Query: 57  ----AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
               A   TG++ ++A R      +    + +    P    +  N++  D  +       
Sbjct: 76  SGLLAKLDTGLSVEEAGR------QVLDYVKRLVPEPGKAQLAGNSVHSDKAFLAKQMPE 129

Query: 113 NFYDSYRW 120
                +  
Sbjct: 130 LINWLHYR 137


>gi|194468196|ref|ZP_03074182.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
 gi|194453049|gb|EDX41947.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
          Length = 178

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 30/196 (15%)

Query: 4   HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +F+  D+ET  G+  +         + + R  +  +                     I G
Sbjct: 2   NFIAMDFETANGKRYSACSL----ALTIVRNGQIADEFYTL---INPHTKFFWRNTQIHG 54

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  +          E    I+QF++ P+  +I +NN         N   RN  + Y    
Sbjct: 55  IHERDVQNAP-DFPEVWEHINQFYT-PDKLVIAHNNRFD------NSVLRNTLEHYNIE- 105

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 +  LD + +                G T++KL  +  A  I+  + H+A  D  
Sbjct: 106 ---VPAYQTLDTVASSRQL----------IPGLTNYKLNTVCDALNIDLHHHHNALDDAQ 152

Query: 183 ATLALVWLIREKKPKL 198
           A   ++    +     
Sbjct: 153 ACANILLYQSKHFTPQ 168


>gi|157283974|ref|YP_001468242.1| exonuclease RNase T and DNA polymerase III [Kineococcus
           radiotolerans SRS30216]
 gi|151363116|gb|ABS06118.1| Exonuclease RNase T and DNA polymerase III [Kineococcus
           radiotolerans SRS30216]
          Length = 203

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 14/126 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D E+   D    +  + A    D     +     F          DP A  + GI  
Sbjct: 50  VLLDTESTALD---GQLVEIAI--TDVHGAPL-----FSSLVRPTTPVDPGARAVHGIGD 99

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++      +    + ++    +      +   N RFD    R    R   D    +    
Sbjct: 100 EELQDAPDLLM-VAPQLRAALA---GRHVIAYNARFDRGLLRREGERIGVDLLSSTRWGC 155

Query: 126 NSRWDL 131
                 
Sbjct: 156 GMHCYT 161


>gi|323308092|gb|EGA61345.1| Rex2p [Saccharomyces cerevisiae FostersO]
          Length = 229

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47
              V  D E  G D   DR  +   +  D     +       +S              K 
Sbjct: 13  KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 72

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +  +         G+T +    +  +   E E    I ++    N  ++  N++  D  
Sbjct: 73  NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 129

Query: 105 YSRNIFYRNFYDSYRW 120
           +    F +     +  
Sbjct: 130 FMVREFPKVIDHLFYR 145


>gi|315655740|ref|ZP_07908638.1| oligoribonuclease [Mobiluncus curtisii ATCC 51333]
 gi|315489804|gb|EFU79431.1| oligoribonuclease [Mobiluncus curtisii ATCC 51333]
          Length = 212

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 19/128 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--------- 56
           V  D E  G D+ +D   + A +  D +   ++S      KP+   +             
Sbjct: 16  VWIDCEMTGLDLHVDELIEVAVIVTDAELNPLDSGIDLLIKPSATAMNHMGEFVREMHTK 75

Query: 57  ----AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
               A   TG++ ++A R      +    + +    P    +  N++  D  +       
Sbjct: 76  SGLLAKLDTGLSVEEAGR------QVLEYVKRLVPEPGKAQLAGNSVHSDKAFLAKQMPE 129

Query: 113 NFYDSYRW 120
                +  
Sbjct: 130 LINWLHYR 137


>gi|219882682|ref|YP_002477846.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
 gi|219861688|gb|ACL42029.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 197

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 28/185 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFITGI 63
           FV  D+E    +       Q   V+V      +  T   F  P           + + GI
Sbjct: 7   FVAIDFEL--ANAKHSSICQIGLVKVRDG--VLGKTHTHFVMPPAGQQNFGHRQIAVHGI 62

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +        +     R+  F    +  ++ +N +       +                
Sbjct: 63  TRRMIDGADGWDL-MLPRLEAF--TGDLPLVAHNVVAERSMIRQTTEAIGLTPPPFT--- 116

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                            F            G  S++L  L  + G+  +  HDA  D  A
Sbjct: 117 -----------------FYCTQRAAQLHLPGQESYRLNMLVESLGLPPLQHHDAGEDAAA 159

Query: 184 TLALV 188
              L 
Sbjct: 160 AAHLA 164


>gi|256637237|dbj|BAI03206.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640289|dbj|BAI06251.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643346|dbj|BAI09301.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646401|dbj|BAI12349.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649454|dbj|BAI15395.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256655498|dbj|BAI21425.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 337

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 7/119 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAV 58
            N  +  D ET G     D+      + +        +  + +  +          P A 
Sbjct: 124 KNKPLFVDVETTGLHSD-DQIVSICMILLYADKSQELQKLTYKSLYYIFDPCKKSHPIAE 182

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            I G          + E E    I  F    +  +I  +N+ FD  + RN F     D 
Sbjct: 183 GIHGYNDWTLRHQNLFE-EKMEHILSFIEESD--VIVAHNVNFDMKFIRNSFANAKIDI 238


>gi|258543099|ref|YP_003188532.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634177|dbj|BAI00153.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256652440|dbj|BAI18374.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-01-42C]
          Length = 343

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 7/119 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAV 58
            N  +  D ET G     D+      + +        +  + +  +          P A 
Sbjct: 130 KNKPLFVDVETTGLHSD-DQIVSICMILLYADKSQELQKLTYKSLYYIFDPCKKSHPIAE 188

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            I G          + E E    I  F    +  +I  +N+ FD  + RN F     D 
Sbjct: 189 GIHGYNDWTLRHQNLFE-EKMEHILSFIEESD--VIVAHNVNFDMKFIRNSFANAKIDI 244


>gi|51013461|gb|AAT93024.1| YLR059C [Saccharomyces cerevisiae]
          Length = 269

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47
              V  D E  G D   DR  +   +  D     +       +S              K 
Sbjct: 53  KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +  +         G+T +    +  +   E E    I ++    N  ++  N++  D  
Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169

Query: 105 YSRNIFYRNFYDSYRW 120
           +    F +     +  
Sbjct: 170 FMVREFPKVIDRLFYR 185


>gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
 gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
          Length = 309

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  E +E           +    P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLIK--PKEMRFMPINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P     + +   +   +I  +F+     ++  +N  FD    R+             ++
Sbjct: 57  RPHMVQDE-LEFDKIWGKIKGYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                ++ +  M+    F  +              +L  +    G +    HDA AD  A
Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTVNNFLGYKF-KHHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|167720628|ref|ZP_02403864.1| oligoribonuclease [Burkholderia pseudomallei DM98]
 gi|167903697|ref|ZP_02490902.1| oligoribonuclease [Burkholderia pseudomallei NCTC 13177]
 gi|254181122|ref|ZP_04887720.1| oligoribonuclease [Burkholderia pseudomallei 1655]
 gi|184211661|gb|EDU08704.1| oligoribonuclease [Burkholderia pseudomallei 1655]
          Length = 201

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 19 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 51


>gi|301787585|ref|XP_002929208.1| PREDICTED: 3'-5' exoribonuclease 1-like [Ailuropoda melanoleuca]
          Length = 349

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIG-YNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++  +            CI+   +         +    R 
Sbjct: 190 TGITQDQVDRAD-TFPQVLKQVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRL 248

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 298


>gi|190406098|gb|EDV09365.1| RNA exonuclease [Saccharomyces cerevisiae RM11-1a]
          Length = 269

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47
              V  D E  G D   DR  +   +  D     +       +S              K 
Sbjct: 53  KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +  +         G+T +    +  +   E E    I ++    N  ++  N++  D  
Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169

Query: 105 YSRNIFYRNFYDSYRW 120
           +    F +     +  
Sbjct: 170 FMVREFPKVIDHLFYR 185


>gi|50287235|ref|XP_446047.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525354|emb|CAG58971.1| unnamed protein product [Candida glabrata]
          Length = 250

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 13/132 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-------TEVFFCKPADDYLPD 54
           T   V  D E  G D   D   +   +  D + + +++         V  C        D
Sbjct: 37  TKPLVWIDCEMTGLDHVNDEIIEICCIVTDGELKNLDTETKEQCYESVVHCPKEKLDAMD 96

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRN 108
              +   G +    K L     + +    +  +           I+  N++  D  +   
Sbjct: 97  QWCLDHHGSSGLMDKVLASKKTKEQVEEELLNYLQKWIPEKRVGILAGNSVHMDRLFMLK 156

Query: 109 IFYRNFYDSYRW 120
            F R     +  
Sbjct: 157 DFPRVVQYLHYR 168


>gi|221133715|ref|ZP_03560020.1| oligoribonuclease [Glaciecola sp. HTCC2999]
          Length = 191

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 32/126 (25%), Gaps = 7/126 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + +  D E  G D       + A +  D Q   +    V      DD L   +   +  
Sbjct: 16  QNLIWIDMEMTGLDPEECVVLEIATIVTDAQLNILAEGPVIAIYQPDDVLANMNEWCIET 75

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G T   Q+         E       F        T  +  N I  D  +          
Sbjct: 76  HGKTGLTQRCRESKYSVEEAQAETIAFLQAYVPERTSPLCGNTIGQDRRFMVKYMPELEA 135

Query: 116 DSYRWS 121
             +  S
Sbjct: 136 YCHYRS 141


>gi|53720090|ref|YP_109076.1| oligoribonuclease [Burkholderia pseudomallei K96243]
 gi|126451823|ref|YP_001067153.1| oligoribonuclease [Burkholderia pseudomallei 1106a]
 gi|134277998|ref|ZP_01764713.1| oligoribonuclease [Burkholderia pseudomallei 305]
 gi|167816819|ref|ZP_02448499.1| oligoribonuclease [Burkholderia pseudomallei 91]
 gi|167846725|ref|ZP_02472233.1| oligoribonuclease [Burkholderia pseudomallei B7210]
 gi|217420377|ref|ZP_03451882.1| oligoribonuclease [Burkholderia pseudomallei 576]
 gi|237813261|ref|YP_002897712.1| oligoribonuclease [Burkholderia pseudomallei MSHR346]
 gi|242316244|ref|ZP_04815260.1| oligoribonuclease [Burkholderia pseudomallei 1106b]
 gi|59798009|sp|Q63S41|ORN_BURPS RecName: Full=Oligoribonuclease
 gi|166215755|sp|A3NXT2|ORN_BURP0 RecName: Full=Oligoribonuclease
 gi|52210504|emb|CAH36487.1| oligoribonuclease [Burkholderia pseudomallei K96243]
 gi|126225465|gb|ABN89005.1| oligoribonuclease [Burkholderia pseudomallei 1106a]
 gi|134251648|gb|EBA51727.1| oligoribonuclease [Burkholderia pseudomallei 305]
 gi|217395789|gb|EEC35806.1| oligoribonuclease [Burkholderia pseudomallei 576]
 gi|237503180|gb|ACQ95498.1| oligoribonuclease [Burkholderia pseudomallei MSHR346]
 gi|242139483|gb|EES25885.1| oligoribonuclease [Burkholderia pseudomallei 1106b]
          Length = 201

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 19 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 51


>gi|134295109|ref|YP_001118844.1| oligoribonuclease [Burkholderia vietnamiensis G4]
 gi|166215757|sp|A4JCK6|ORN_BURVG RecName: Full=Oligoribonuclease
 gi|134138266|gb|ABO54009.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
          vietnamiensis G4]
          Length = 200

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51


>gi|313895399|ref|ZP_07828956.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976294|gb|EFR41752.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 219

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 64/199 (32%), Gaps = 27/199 (13%)

Query: 6   VIYDYETF--GRDVA------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           ++ D E    G++             +   VR+  ++ + +  + + C   +  L     
Sbjct: 4   IVVDLEMNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVC--PEYGLVKKHI 61

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGIT ++      V AE  +    +     T I  Y+    D    R    R     
Sbjct: 62  TELTGITQEQVSGQ-RVFAESFKNFVDWIGASETKI--YSWSMSDIKQLRKEC-RLKVPD 117

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           +  +W +          MR +        +    +  A    L  +           H A
Sbjct: 118 FDVNWLD----------MRWVDLQQAFDDRLGLHNSLALKHALGAMGRRF---EGTQHSA 164

Query: 178 KADVYATLALVWLIREKKP 196
            AD   T A++ L+++ + 
Sbjct: 165 LADAINTSAVLTLMQDDEK 183


>gi|213618910|ref|ZP_03372736.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 218

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 57/250 (22%), Gaps = 51/250 (20%)

Query: 22  PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81
             + A V V      +            D    P+A+ I  IT         +E +    
Sbjct: 2   IVEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEAMVADKPWIE-DVIP- 55

Query: 82  IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAF 141
                   +   + +N            F R         W         +  M+     
Sbjct: 56  ----LYYGSEWYVAHN----------ASFDRRVLPELPGEW---------ICTMKLSRRL 92

Query: 142 SPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201
                 WP       +              ++ H A  D Y T     LI   +   +  
Sbjct: 93  ------WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA--ALLIDIMRTTGW-- 142

Query: 202 LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-WHPRYKDSVIGCNLSG 260
                      + +      P +  +  F   +     ++ VA   P Y   +     + 
Sbjct: 143 ---------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNM 191

Query: 261 DMRVFQDLDS 270
              +   L  
Sbjct: 192 SPELRLTLKH 201


>gi|254195663|ref|ZP_04902090.1| oligoribonuclease [Burkholderia pseudomallei S13]
 gi|169652409|gb|EDS85102.1| oligoribonuclease [Burkholderia pseudomallei S13]
          Length = 203

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 21 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 53


>gi|332197465|gb|AEE35586.1| polynucleotidyl transferase, ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 495

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 59/201 (29%), Gaps = 29/201 (14%)

Query: 5   FVIYDYETFGRDVALD----RPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVF 59
              +D ET               +F  + V  R+ E++ S      +P D  L       
Sbjct: 13  IAFFDLET--AVPTKSGEPFAILEFGAILVCPRRLEELYSYSTL-VRPTDLSLISTLTKR 69

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            +GIT    L      +E + +++           G+N IRFD    R  F         
Sbjct: 70  RSGITRDGVLSA-HTFSEIADKVYDIL--HGRIWAGHNIIRFDCVRIREAFAEIGLSPPE 126

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                  +  D L ++   +               A   K+  LA   G+    AH +  
Sbjct: 127 -----PKATIDSLSLLSQKF------------GKRAGDMKMASLATYFGLG-DQAHRSLD 168

Query: 180 DVYATLALVWLIREKKPKLFE 200
           DV   L    +        + 
Sbjct: 169 DVRMNLEESSVPDILTDMSWF 189


>gi|320096134|ref|ZP_08027731.1| oligoribonuclease [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976935|gb|EFW08681.1| oligoribonuclease [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 200

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 23/120 (19%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D E  G DV  D   + A V        ++        P  D L  P A  + G++ 
Sbjct: 2   VWIDCEMTGLDVGADALIEVAVVITGADLTVVD--------PGIDVLIAPPAAALEGMSD 53

Query: 66  ---QKALRDGVVE------------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
                  + G+++                  I +F       ++  N++  D  +     
Sbjct: 54  FVRDMHTKSGLLDDLKDGVTMEEATERVLSYIKRFVPEAGKALLAGNSVGTDKMFLEANM 113


>gi|114623463|ref|XP_001136735.1| PREDICTED: hypothetical protein LOC463978 isoform 1 [Pan
           troglodytes]
          Length = 349

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++  +  +         + +   +         +    R 
Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 248

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDD 298


>gi|318606038|emb|CBY27536.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 220

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 38/190 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G         + A + V      + +        + D     +A+ I  IT
Sbjct: 3   FRVIDTETCGL---EGGIVEIASIDVMDGA--LSNPMSDLV--SPDRPISLDAMVIHHIT 55

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +            +  + ++    +   + +N              R         W  
Sbjct: 56  EEMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW-- 97

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L + R +Y         P         +       +  +++  H A  D Y T
Sbjct: 98  ----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVT 144

Query: 185 LALVWLIREK 194
            AL+  I   
Sbjct: 145 AALLQRIMRD 154


>gi|307172626|gb|EFN63985.1| hypothetical protein EAG_09598 [Camponotus floridanus]
          Length = 292

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 66/249 (26%), Gaps = 33/249 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I+D ET G         Q A    ++++       +F        +       IT ++ 
Sbjct: 4   IIFDLETTGFGPN-AEIIQIAAKYHNQEFNV----YIFPSNSIPTIV-----SNITNLSI 53

Query: 66  QKALRDGVVEAE-----------FSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYR 112
           +        E E                  F      +  ++ +N  RFD          
Sbjct: 54  EDGQLILDSENEYRRLDTESPRMACELFISFLKNISHDIILVAHNGERFDAPLIVKTMNA 113

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIE 170
                   S   G +    +   R   AF         +  G   F L  LA        
Sbjct: 114 VGLLKEFGSIVKGFTDSLSIFKDRKELAFR--------KKKGKGGFSLSALANDYLEPDS 165

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
              AH+A  DV     L+     K+ +L   +  + +     ++   +          M 
Sbjct: 166 TRGAHNAVVDVQMLDNLLKKFAIKETELISCVVPFSSIVNADRIRKEKEEKKNAMFVIME 225

Query: 231 GASRSNTAL 239
               S   +
Sbjct: 226 PFGISKNMI 234


>gi|53724753|ref|YP_102207.1| oligoribonuclease [Burkholderia mallei ATCC 23344]
 gi|67642879|ref|ZP_00441630.1| oligoribonuclease [Burkholderia mallei GB8 horse 4]
 gi|121598453|ref|YP_993837.1| oligoribonuclease [Burkholderia mallei SAVP1]
 gi|124385187|ref|YP_001026898.1| oligoribonuclease [Burkholderia mallei NCTC 10229]
 gi|126441737|ref|YP_001059867.1| oligoribonuclease [Burkholderia pseudomallei 668]
 gi|126450125|ref|YP_001079814.1| oligoribonuclease [Burkholderia mallei NCTC 10247]
 gi|166999773|ref|ZP_02265607.1| oligoribonuclease [Burkholderia mallei PRL-20]
 gi|167739617|ref|ZP_02412391.1| oligoribonuclease [Burkholderia pseudomallei 14]
 gi|167825224|ref|ZP_02456695.1| oligoribonuclease [Burkholderia pseudomallei 9]
 gi|167895311|ref|ZP_02482713.1| oligoribonuclease [Burkholderia pseudomallei 7894]
 gi|167911947|ref|ZP_02499038.1| oligoribonuclease [Burkholderia pseudomallei 112]
 gi|167919939|ref|ZP_02507030.1| oligoribonuclease [Burkholderia pseudomallei BCC215]
 gi|226197920|ref|ZP_03793494.1| oligoribonuclease [Burkholderia pseudomallei Pakistan 9]
 gi|254176983|ref|ZP_04883640.1| oligoribonuclease [Burkholderia mallei ATCC 10399]
 gi|254208872|ref|ZP_04915220.1| oligoribonuclease [Burkholderia mallei JHU]
 gi|254259729|ref|ZP_04950783.1| oligoribonuclease [Burkholderia pseudomallei 1710a]
 gi|254295656|ref|ZP_04963114.1| oligoribonuclease [Burkholderia pseudomallei 406e]
 gi|59798006|sp|Q62M61|ORN_BURMA RecName: Full=Oligoribonuclease
 gi|166215752|sp|A3MHS8|ORN_BURM7 RecName: Full=Oligoribonuclease
 gi|166215753|sp|A2S4M9|ORN_BURM9 RecName: Full=Oligoribonuclease
 gi|166215754|sp|A1V6I4|ORN_BURMS RecName: Full=Oligoribonuclease
 gi|166215756|sp|A3NBZ6|ORN_BURP6 RecName: Full=Oligoribonuclease
 gi|52428176|gb|AAU48769.1| oligoribonuclease [Burkholderia mallei ATCC 23344]
 gi|121227263|gb|ABM49781.1| oligoribonuclease [Burkholderia mallei SAVP1]
 gi|124293207|gb|ABN02476.1| oligoribonuclease [Burkholderia mallei NCTC 10229]
 gi|126221230|gb|ABN84736.1| oligoribonuclease [Burkholderia pseudomallei 668]
 gi|126242995|gb|ABO06088.1| oligoribonuclease [Burkholderia mallei NCTC 10247]
 gi|147750748|gb|EDK57817.1| oligoribonuclease [Burkholderia mallei JHU]
 gi|157805488|gb|EDO82658.1| oligoribonuclease [Burkholderia pseudomallei 406e]
 gi|160698024|gb|EDP87994.1| oligoribonuclease [Burkholderia mallei ATCC 10399]
 gi|225930108|gb|EEH26121.1| oligoribonuclease [Burkholderia pseudomallei Pakistan 9]
 gi|238524093|gb|EEP87528.1| oligoribonuclease [Burkholderia mallei GB8 horse 4]
 gi|243064261|gb|EES46447.1| oligoribonuclease [Burkholderia mallei PRL-20]
 gi|254218418|gb|EET07802.1| oligoribonuclease [Burkholderia pseudomallei 1710a]
          Length = 201

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 19 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 51


>gi|324509601|gb|ADY44034.1| Oligoribonuclease [Ascaris suum]
          Length = 198

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 46/178 (25%), Gaps = 17/178 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---- 57
           +   +  D E  G DV      + A +  +     +           +D L +  +    
Sbjct: 22  SERLIWIDCEMTGLDVRQHTLVEIACIVTEADLSVVAEGPDIVISQPEDVLANMSSWCRS 81

Query: 58  -VFITGITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRN 113
                G+  QK     +       ++  F      P  C +  N++  D  +        
Sbjct: 82  TFARNGLL-QKIRESNISIKAAESQVLSFLKEHTDPGKCPLAGNSVHMDRVFIER----- 135

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                     + + R   +  ++ +           S         L D+  +    H
Sbjct: 136 ---YMPNLVKHLHYRIVDVSTIKEVARRWYPLEFASSPQKLQKHRALDDIRESIQELH 190


>gi|255596951|ref|XP_002536656.1| conserved hypothetical protein [Ricinus communis]
 gi|223518960|gb|EEF25726.1| conserved hypothetical protein [Ricinus communis]
          Length = 216

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 7/125 (5%)

Query: 6   VIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            I+D E  G          + A   V        S  ++      +    P+AV ITGIT
Sbjct: 22  TIFDTEGTGFRGPNFG-ITEVACFTVAPNAT---SGVLYGHLINPEETITPQAVKITGIT 77

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                   +    ++    Q     +  I G+N+  +D +   ++  +      ++ +  
Sbjct: 78  QAMVSGAELWSLRYAALFKQM--AASHWIGGFNSATYDLHAVIDMNAKYGMPFEKFEYSF 135

Query: 125 GNSRW 129
                
Sbjct: 136 DVRTL 140


>gi|157370180|ref|YP_001478169.1| exodeoxyribonuclease X [Serratia proteamaculans 568]
 gi|157321944|gb|ABV41041.1| Exonuclease RNase T and DNA polymerase III [Serratia proteamaculans
           568]
          Length = 222

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 59/216 (27%), Gaps = 38/216 (17%)

Query: 7   IYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           + D ET G         + A V  +D    +I +        + D     EA+ I  IT 
Sbjct: 5   VIDTETCGL---EGGVVEVASVDLIDG---QIANPMSDL--ISPDRPIGIEAMAIHHITE 56

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           Q            +  I ++    +   + +N            F R        +W   
Sbjct: 57  QMVEGKPR----IAVAIGRY--QGSPYYVAHN----------AAFDRGVLPEMHGAW--- 97

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 +  M+      PD        +    + L           +  H A  D Y T 
Sbjct: 98  ------ICTMKLARNLYPDI----KYGNQYLRYALNLDVQLPQDTTLYPHRALYDCYVTA 147

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
           AL+  I +      E +    ++  L K        
Sbjct: 148 ALLQRIIKDSGWTPEQMAQITDQPVLLKKFKFGKYR 183


>gi|289642810|ref|ZP_06474947.1| Exonuclease RNase T and DNA polymerase III [Frankia symbiont of
           Datisca glomerata]
 gi|289507379|gb|EFD28341.1| Exonuclease RNase T and DNA polymerase III [Frankia symbiont of
           Datisca glomerata]
          Length = 270

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 12/150 (8%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV--- 58
            +  V  D E  G D A D   + A +  D +   +           +  L   +AV   
Sbjct: 1   MDRLVWIDCEMTGLDAASDLLLEVACLVTDSELNILGGGVDVVVSAPETALAGMDAVVQQ 60

Query: 59  --FITGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
               +G+T +      +     E +    +           +  N+I  D  +     Y 
Sbjct: 61  MHATSGLT-EAVRASTLTVADAERQVLDYVRDQIPDAGKAPLCGNSIATDRNFL--ARYM 117

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
              DSY        S    L       A+ 
Sbjct: 118 PALDSYLHYRMVDVSTVKELARRWYPRAYY 147


>gi|256271847|gb|EEU06877.1| Rex2p [Saccharomyces cerevisiae JAY291]
          Length = 269

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47
              V  D E  G D   DR  +   +  D     +       +S              K 
Sbjct: 53  KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +  +         G+T +    +  +   E E    I ++    N  ++  N++  D  
Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNIGVLAGNSVHMDRL 169

Query: 105 YSRNIFYRNFYDSYRW 120
           +    F +     +  
Sbjct: 170 FMVREFPKVIDHLFYR 185


>gi|251778634|ref|ZP_04821554.1| exonuclease family protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082949|gb|EES48839.1| exonuclease family protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 303

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 19/175 (10%)

Query: 19  LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78
            +   +   ++VD+  +++      + KP+   + +P    IT IT     ++G+   + 
Sbjct: 36  ENEIIEIGAIKVDKYMKQVAEMRE-YIKPSVFPVMNPIVTNITKITMDTLQKEGITFKQG 94

Query: 79  SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138
             ++       +  +I             N  Y N+ D                      
Sbjct: 95  MDKLKGMIEDGD--VICSWAKDDIAEIIINSNYHNYTDLSWIK----------------E 136

Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE 193
           Y    +          A   K     L   +++   HDA  D   TL +   I  
Sbjct: 137 YLDLQEYSTKILGHKKAMGLKSALDELKIKVDNTKLHDALNDAEYTLLVFKHIYN 191


>gi|256395105|ref|YP_003116669.1| oligoribonuclease [Catenulispora acidiphila DSM 44928]
 gi|256361331|gb|ACU74828.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
           acidiphila DSM 44928]
          Length = 213

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 53/196 (27%), Gaps = 21/196 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M++  V  D E  G D+  D   + A +  D +   +         P  + LP       
Sbjct: 1   MSDRLVWIDCEMTGLDLDKDALIEVAVLVTDSELNVLGDGVDVVVAPPAEELP------- 53

Query: 61  TGITPQKALRDGVVEAEFSRRIH---QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            G+             E  R +H         ++ I           Y R          
Sbjct: 54  -GLLEGMV--------EVVREMHTASGLLEELSSGIPMAEAQERVLAYVREHVPEAGKAQ 104

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
              +    +  +   D+           +   S  + A  +        N  +    H A
Sbjct: 105 LAGNSVGTDRGFLARDMPELEQHLHYRIVDVSSIKELARRW--YPRVYFNAPKKTGNHRA 162

Query: 178 KADVYATLALVWLIRE 193
             D+  ++A +   R+
Sbjct: 163 LGDIRDSIAELRYYRD 178


>gi|151941228|gb|EDN59606.1| RNA exonuclease [Saccharomyces cerevisiae YJM789]
 gi|259148048|emb|CAY81297.1| Rex2p [Saccharomyces cerevisiae EC1118]
          Length = 269

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 21/136 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47
              V  D E  G D   DR  +   +  D     +       +S              K 
Sbjct: 53  KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKM 112

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +  +         G+T +    +  +   E E    I ++    N  ++  N++  D  
Sbjct: 113 NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169

Query: 105 YSRNIFYRNFYDSYRW 120
           +    F +     +  
Sbjct: 170 FMVREFPKVIDHLFYR 185


>gi|254191977|ref|ZP_04898477.1| oligoribonuclease [Burkholderia pseudomallei Pasteur 52237]
 gi|254203892|ref|ZP_04910252.1| oligoribonuclease [Burkholderia mallei FMH]
 gi|254360071|ref|ZP_04976341.1| oligoribonuclease [Burkholderia mallei 2002721280]
 gi|147745404|gb|EDK52484.1| oligoribonuclease [Burkholderia mallei FMH]
 gi|148029311|gb|EDK87216.1| oligoribonuclease [Burkholderia mallei 2002721280]
 gi|157987799|gb|EDO95564.1| oligoribonuclease [Burkholderia pseudomallei Pasteur 52237]
          Length = 203

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
          + V  D E  G D   DR  + A V  +   + 
Sbjct: 21 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 53


>gi|109899782|ref|YP_663037.1| oligoribonuclease [Pseudoalteromonas atlantica T6c]
 gi|122971629|sp|Q15Q55|ORN_PSEA6 RecName: Full=Oligoribonuclease
 gi|109702063|gb|ABG41983.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas
           atlantica T6c]
          Length = 181

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            + V  D E  G    +D   + A +  D     +    V     +DD L   +   +  
Sbjct: 6   QNLVWIDMEMTGLHPEVDVVLEIATIVTDANLNILAEGPVLAIHQSDDVLNNMNQWCIDT 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +   +++ +  V E        +F           +  N I  D  +          
Sbjct: 66  HGKSGLTERSRKSTVDEQTAVAETIRFLEKYVPKGASPLCGNTIGQDRRFMVKYMPELED 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|256079041|ref|XP_002575799.1| hypothetical protein [Schistosoma mansoni]
 gi|238661049|emb|CAZ32034.1| expressed protein [Schistosoma mansoni]
          Length = 301

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 63/241 (26%), Gaps = 38/241 (15%)

Query: 4   HFVIYDYETFGR-DVALD-RPAQ---FAGVRVDRQWEKIEST---EVFFCKPADDYLPDP 55
             V++D ET G      +    +    A  R   +                         
Sbjct: 16  TLVLFDVETTGLPSANFNPEITELCMLACSRFSLE-NATAEPRVENKLTLCFNPTRTISS 74

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRN 113
            A  I+G+           +A     I  F +  ++  C I +N +RFD    R      
Sbjct: 75  IASKISGLNSDNLFHQKDFDASAVDLIQLFLNRLDSPVCFIAHNGLRFDFPLLRAQIMSV 134

Query: 114 FYDSYRWSWDNGNSRW--DLLDVMRAIY-------------AFSPDGIQWPSRDDGATSF 158
               Y  +          D L + R                  + D    P     ++  
Sbjct: 135 KGKDYNLNDSTNAPIICTDTLPLFREFASQLSGVNSDDSGFISTDDQSSTPVPISHSSPI 194

Query: 159 KLQDLALA------------NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYR 206
           KL                   G +H +AH A+ D  A L LV  +        +  Y   
Sbjct: 195 KLPTTTNKHSFHLGDIHERVFGEKHKHAHSAEGDCRAMLRLVQYLGSPAIDWLQSHYINF 254

Query: 207 N 207
           N
Sbjct: 255 N 255


>gi|183602109|ref|ZP_02963477.1| hypothetical protein BIFLAC_07642 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683021|ref|YP_002469404.1| DNA polymerase III [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191341|ref|YP_002968735.1| DNA polymerase III subunit epsilon [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196747|ref|YP_002970302.1| DNA polymerase III subunit epsilon [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218602|gb|EDT89245.1| hypothetical protein BIFLAC_07642 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620671|gb|ACL28828.1| DNA polymerase III [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249733|gb|ACS46673.1| DNA polymerase III epsilon subunit [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251301|gb|ACS48240.1| DNA polymerase III epsilon subunit [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794334|gb|ADG33869.1| DNA polymerase III epsilon subunit [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 461

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 55/207 (26%), Gaps = 34/207 (16%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVD---------------------RQWEKIESTEVFFCK 46
            D ET G     D        R++                           +S   F   
Sbjct: 235 IDIETTGTSAWRDYIIDVGFERMNLQTPAPEGAKARDVYSETDYAADGAYDQSRLSFGVP 294

Query: 47  PADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
                + +P    +TGI   K   +  +  E+ R                +N  F+  + 
Sbjct: 295 LRCAEVANPFIAQLTGIDVTKIAGEP-IFDEWPRMQQALLERLMQQPYVAHNATFEHRFF 353

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                    + Y  ++ NG     +LD M     +  D    PS         L+  A  
Sbjct: 354 MANV-----EGYAEAYRNG--EITILDTMPMSRHW--DAGSVPSPGHPHGDNTLEAYAKR 404

Query: 167 NGIEHVNAHD---AKADVYATLALVWL 190
            G    N+H+      D +  L  +  
Sbjct: 405 QGALDGNSHERHLGLEDAHIMLVAMRH 431


>gi|163753213|ref|ZP_02160337.1| hypothetical protein KAOT1_13672 [Kordia algicida OT-1]
 gi|161326945|gb|EDP98270.1| hypothetical protein KAOT1_13672 [Kordia algicida OT-1]
          Length = 183

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 31/122 (25%), Gaps = 7/122 (5%)

Query: 2   TNHFVIYDYETF-----G-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           TN  ++ D E       G          +     +D    KI   +       +      
Sbjct: 4   TNKILVVDLEATCWEQDGEYQRNHSEIIEIGICELDVPSGKISKQQGILV-IPEHSEISR 62

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T ITP+   +DGV   +    +   +         Y     +         +  +
Sbjct: 63  FCTELTSITPEMVAQDGVSFEDAIDILFDEYDSSAYTWASYGAYDRNKVMEECRKKQVDF 122

Query: 116 DS 117
             
Sbjct: 123 PF 124


>gi|332375352|gb|AEE62817.1| unknown [Dendroctonus ponderosae]
          Length = 304

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 9/122 (7%)

Query: 3   NHFVIYDYETFGR---DVALDRPAQFAGVRVDRQWEKIES----TEVFFCKPADDYLPDP 55
             F   D ET G    ++   +  +   + +     ++         F        L   
Sbjct: 5   KTFAFIDLETTGLPSMELNRTKITELTILAIQADHLELGCLPRVQNKFTLCFNPRKLVSS 64

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRN 113
            +  ITG++                 +++F     T  C++ +N  +FD    R    ++
Sbjct: 65  GSEEITGLSNSILEHLRPFSDGTVTALNEFLRHNPTPICLVAHNGNKFDYPILRTEINKS 124

Query: 114 FY 115
             
Sbjct: 125 GQ 126


>gi|281424653|ref|ZP_06255566.1| exonuclease [Prevotella oris F0302]
 gi|281401241|gb|EFB32072.1| exonuclease [Prevotella oris F0302]
          Length = 162

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 46/175 (26%), Gaps = 29/175 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V + R  E  +        P  DY        + 
Sbjct: 1   MKDFAAIDFET--ANNERTSVCSVGLVVI-RDGEIADRFYSLIH-PEPDY-YTYWNTRVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T         +  E  R++           +  +N  FD+   + +F     D   +S
Sbjct: 56  GLTQADTNHAP-IFPEVWRKVESLIVD---LPLVAHNKAFDESCLKAVFRCYQMDYPDYS 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +                   +     WP          L  +A   G +  N H 
Sbjct: 112 F---------------YCTLAQSRRVWPQGH-----HNLNIIAARCGYDFTNHHH 146


>gi|332162002|ref|YP_004298579.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666232|gb|ADZ42876.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 220

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 38/190 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G         + A + V      + +        + D     +A+ I  IT
Sbjct: 3   FRVIDTETCGL---EGGIVEIASIDVMDGA--LSNPMSDLV--SPDRPISLDAMVIHHIT 55

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +            +  + ++    +   + +N              R         W  
Sbjct: 56  EEMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW-- 97

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L + R +Y         P         +       +  +++  H A  D Y T
Sbjct: 98  ----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVT 144

Query: 185 LALVWLIREK 194
            AL+  I   
Sbjct: 145 AALLQRIMRD 154


>gi|281345321|gb|EFB20905.1| hypothetical protein PANDA_019321 [Ailuropoda melanoleuca]
          Length = 311

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 92  ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 151

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIG-YNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++  +            CI+   +         +    R 
Sbjct: 152 TGITQDQVDRAD-TFPQVLKQVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRL 210

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 211 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 260


>gi|157874229|ref|XP_001685602.1| DNA polymerase III epsilon subunit-like exonuclease;
           exonuclease-like protein [Leishmania major]
 gi|68128674|emb|CAJ08806.1| exonuclease-like protein [Leishmania major strain Friedlin]
          Length = 188

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 44/177 (24%), Gaps = 36/177 (20%)

Query: 38  ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC----- 92
                 + +P+D       A  + GIT +            +R +  + ++         
Sbjct: 13  GRVFHRYVRPSDPRRISAAAAAVHGITWETVQNC-SPWPVVARELVAYMALVGADAPVSA 71

Query: 93  ------------------IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDV 134
                              +  +N  FD  +  +   R  Y  +       + R+ L   
Sbjct: 72  SAQLEAAQLGGQRAVHLPPLVAHNASFDARFLEHHLRRCGYQIFW------HPRYPLTCT 125

Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191
            +      P             S        ANG      HDA  D   T  L   +
Sbjct: 126 RQWAQVAYPHLANNLDALCAFLSIDWAADRAANG------HDALTDATLTALLFLQM 176


>gi|332978822|gb|EGK15506.1| exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           1501(2011)]
          Length = 252

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/269 (10%), Positives = 69/269 (25%), Gaps = 46/269 (17%)

Query: 2   TNHFVIYDYETFGR-DVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59
              ++  D ET G  D       + A   +D    +          +          ++ 
Sbjct: 15  MTTYI-LDTETTGLVDP---HMTEAAYSIIDIVNGQVQVLQAPRDKRFNPLKPISLGSMA 70

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            + I  +    +     +F              ++G+N   +D    +N    +      
Sbjct: 71  TSHICDEDVANEP-PHTDF------RLPSSVQYLVGHNI-DYDMQVLKNAGVTHTPKLIC 122

Query: 120 WSWDNGN--SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
               +       D   ++  +Y F  D  +                      +   AH A
Sbjct: 123 TKAMSNFLLPTLDSHTLVALLYHFHRDVARR---------------------DAKQAHAA 161

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
             D++ T  ++  + +               + +  +  +   + L  +       +   
Sbjct: 162 VYDIFFTQLVLSSLID---------LANSQGHSITDVESLYQFSELARIPTHLSFGKYKG 212

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQ 266
             IA +A +P     +        +  + 
Sbjct: 213 QAIADIAANPDGAGYLKWLLNQDSVDPYL 241


>gi|293608826|ref|ZP_06691129.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299771039|ref|YP_003733065.1| ribonuclease T [Acinetobacter sp. DR1]
 gi|292829399|gb|EFF87761.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298701127|gb|ADI91692.1| ribonuclease T [Acinetobacter sp. DR1]
 gi|325121407|gb|ADY80930.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse
           activity) [Acinetobacter calcoaceticus PHEA-2]
          Length = 220

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 31/211 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +  D Q +            P +    D  ++   G
Sbjct: 24  VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83

Query: 63  ITP------QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P        A  +        + +++          ++  +N  FD  + +    R  
Sbjct: 84  IDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQAAIART- 142

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172
                    N    + ++D +          +             L    +  GIE    
Sbjct: 143 ----STKNQNPFHSFSVMDTVTLSAVMFGQTV-------------LAKACIQAGIEFDGK 185

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLY 203
            AH A  D   T  L   I  K         
Sbjct: 186 EAHSALYDTQKTAELFCYILNKLSPYLLDSL 216


>gi|262279766|ref|ZP_06057551.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202]
 gi|262260117|gb|EEY78850.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202]
          Length = 220

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 31/211 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +  D Q +            P +    D  ++   G
Sbjct: 24  VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83

Query: 63  ITP------QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P        A  +        + +++          ++  +N  FD  + +    R  
Sbjct: 84  IDPFNPMRMAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQAAIART- 142

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172
                    N    + ++D +          +             L    +  GIE    
Sbjct: 143 ----STKNQNPFHSFSVMDTVTLSAVMFGQTV-------------LAKACIQAGIEFDGK 185

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLY 203
            AH A  D   T  L   I  K         
Sbjct: 186 EAHSALYDTQKTAELFCYILNKLSPYLLDSL 216


>gi|182683937|ref|YP_001835684.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CGSP14]
 gi|182629271|gb|ACB90219.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CGSP14]
          Length = 208

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R   +I++ + +                +
Sbjct: 17  EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 69

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +      +F    +  +IGYN  + D                  
Sbjct: 70  TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 120 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 166

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 167 ARMTARVYESFLESDQ 182


>gi|158255560|dbj|BAF83751.1| unnamed protein product [Homo sapiens]
 gi|261858590|dbj|BAI45817.1| exoribonuclease 1 [synthetic construct]
          Length = 349

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++  +  +         + +   +         +    R 
Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 248

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDD 298


>gi|116515062|ref|YP_802691.1| ribonuclease T [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285542|sp|Q057V1|RNT_BUCCC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
           Short=RNase T
 gi|116256916|gb|ABJ90598.1| exoribonuclease T [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 221

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 58/219 (26%), Gaps = 34/219 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61
           V+ D E+ G     D   + A V +        +  +    F   P    +   E+V   
Sbjct: 21  VVIDIESAGFQADTDALLEIAIVTLKMNKSGWLKIDDRLH-FHIIPFKGSIIKAESVAFN 79

Query: 62  GITPQKALRDGVVEAEFSRRIHQF------FSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            I P   LR  V E    + I +        +     I+  +N  FD  +      R   
Sbjct: 80  KIDPFNPLRGAVSEKNALKNIFKLVRKKININKCRKGILVAHNANFDHNFLMAASKRVGN 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--N 173
            +      N    +   D            +             L       GI      
Sbjct: 140 LN------NPFHPFTTFDTAALSGLIFGQTV-------------LAKACKLAGIPFDTNQ 180

Query: 174 AHDAKADVYATLALVWLIREK--KPKLFEYLYDYRNKNQ 210
           AH A  D   T  L   +  +  +   +     +R K  
Sbjct: 181 AHSALYDTIQTAYLFCELVNRWKRLGGWPPNSSHRKKTD 219


>gi|154483908|ref|ZP_02026356.1| hypothetical protein EUBVEN_01613 [Eubacterium ventriosum ATCC
           27560]
 gi|149735399|gb|EDM51285.1| hypothetical protein EUBVEN_01613 [Eubacterium ventriosum ATCC
           27560]
          Length = 334

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 49/206 (23%), Gaps = 27/206 (13%)

Query: 1   MTNHFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           M + +++ D E      G+            +   VRV    + I  +     KP     
Sbjct: 1   MMD-YIVMDLEWNQNPYGKSHCHTDLTFEIIEIGAVRVSDDRKTIVDSFQQVIKPRVFKK 59

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
              +   IT  T ++         +F + I  F        I       D    +     
Sbjct: 60  LHYKIQEITHFTEEELNDGK----DFRKVIRDFLEWCGDDYIFCTWGSMDLTELQKNMKH 115

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
              +                      Y            D          +   N  E  
Sbjct: 116 YNLERVLDF--------------PLFYVDLQKMFSLRYDDGHMKRNLTSAVEYLNIQEEH 161

Query: 173 NAHDAKADVYATLALVWLIREKKPKL 198
             H A +D Y T  ++  +   K K 
Sbjct: 162 EFHRALSDAYYTARILQSMDYDKYKD 187


>gi|31543184|ref|NP_699163.2| 3'-5' exoribonuclease 1 [Homo sapiens]
 gi|45476938|sp|Q8IV48|ERI1_HUMAN RecName: Full=3'-5' exoribonuclease 1; AltName: Full=3'-5'
           exonuclease ERI1; AltName: Full=Eri-1 homolog; AltName:
           Full=Histone mRNA 3'-end-specific exoribonuclease;
           AltName: Full=Histone mRNA 3'-exonuclease 1; AltName:
           Full=Protein 3'hExo; Short=HEXO
 gi|23271401|gb|AAH35279.1| Exoribonuclease 1 [Homo sapiens]
 gi|33520761|gb|AAQ21219.1| 3' exoribonuclease [Homo sapiens]
 gi|119585973|gb|EAW65569.1| three prime histone mRNA exonuclease 1, isoform CRA_b [Homo
           sapiens]
 gi|119585974|gb|EAW65570.1| three prime histone mRNA exonuclease 1, isoform CRA_b [Homo
           sapiens]
 gi|123979876|gb|ABM81767.1| three prime histone mRNA exonuclease 1 [synthetic construct]
 gi|123994641|gb|ABM84922.1| three prime histone mRNA exonuclease 1 [synthetic construct]
          Length = 349

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++  +  +         + +   +         +    R 
Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 248

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDD 298


>gi|242023941|ref|XP_002432389.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517812|gb|EEB19651.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 289

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 10/123 (8%)

Query: 3   NHFVIYDYETFGRDV---ALDRPAQFAG----VRVDRQWEKIESTEVFFCKP-ADDYLPD 54
              ++YD ET G         +  + A     +   +    +               +  
Sbjct: 5   KSIIVYDSETTGLPHLESNTTKITELAFMGCEIEHLKNINNLPRVLHKLVLLFNPMKMIL 64

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYR 112
           P++  ITG+  +  +       E  + +  F +   +  C+I +N  +FD    +   ++
Sbjct: 65  PDSSEITGLENEDLMNIKPFCEEDVQVLIHFINRLPSPVCLIAHNGNKFDFPILQRQLFK 124

Query: 113 NFY 115
              
Sbjct: 125 LNL 127


>gi|308050117|ref|YP_003913683.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
 gi|307632307|gb|ADN76609.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
           DSM 9799]
          Length = 223

 Score = 49.8 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 48/179 (26%), Gaps = 20/179 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D E  G DV  D     A V + R    +  +               ++  I GI  
Sbjct: 38  LALDLELTGLDVRQDAILSIAAVPIIRGRLVLAQSWHQLVSIDGGV---GQSATIHGIHD 94

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +       +E      +          ++  ++   D  + +  F  +F           
Sbjct: 95  RHLTDAQPLEQ----ALLALLPQLAGRVLVCHHGGLDLGFLQAGFQHHF------GQGLP 144

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               D L + +         ++       A S +L       G+     H A  D  A 
Sbjct: 145 LKVIDTLKIEQRRLERQGTVLK-------ADSLRLAQCRRRYGLPDYPGHHALVDAIAC 196


>gi|292493403|ref|YP_003528842.1| exonuclease RNase T and DNA polymerase III [Nitrosococcus
          halophilus Nc4]
 gi|291581998|gb|ADE16455.1| Exonuclease RNase T and DNA polymerase III [Nitrosococcus
          halophilus Nc4]
          Length = 183

 Score = 49.8 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 13/38 (34%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
            + +  D E  G D   D   + A V  D     IE 
Sbjct: 5  PPNLIWLDLEMSGLDTTQDVILEIATVVTDSDLNIIEE 42


>gi|1019712|gb|AAA98633.1| YNT20 [Saccharomyces cerevisiae]
          Length = 248

 Score = 49.8 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 21/136 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47
              V  D E  G D   DR  +   +  D     +       +S              K 
Sbjct: 53  KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYETVIHYGPEVMNKM 112

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +  +            P+    +  +   E E    I ++    N  ++  N++  D  
Sbjct: 113 NEWCIEHHGNSESH---PKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRL 169

Query: 105 YSRNIFYRNFYDSYRW 120
           +    F +     +  
Sbjct: 170 FMVREFPKVIDHLFYR 185


>gi|270284496|ref|ZP_05966220.2| exonuclease family protein [Bifidobacterium gallicum DSM 20093]
 gi|270277009|gb|EFA22863.1| exonuclease family protein [Bifidobacterium gallicum DSM 20093]
          Length = 249

 Score = 49.8 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 9/110 (8%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + +++   D  T       D   + A +RV R  + +   E    +     LP   A   
Sbjct: 77  LPDNYCAIDVIT--HSPDSDELIELAAIRV-RSGKPVGQMETLVAQ--SGPLPQDVAAR- 130

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
           TG+T            +   +   F    N   I  N  R          
Sbjct: 131 TGLTDAALAGQP-SVKQAIEQFLSFV--GNDTFIAPNVGRMQTELFLAER 177


>gi|254975427|ref|ZP_05271899.1| putative exonuclease [Clostridium difficile QCD-66c26]
 gi|255092814|ref|ZP_05322292.1| putative exonuclease [Clostridium difficile CIP 107932]
 gi|255100928|ref|ZP_05329905.1| putative exonuclease [Clostridium difficile QCD-63q42]
 gi|255314556|ref|ZP_05356139.1| putative exonuclease [Clostridium difficile QCD-76w55]
 gi|255517231|ref|ZP_05384907.1| putative exonuclease [Clostridium difficile QCD-97b34]
 gi|255650337|ref|ZP_05397239.1| putative exonuclease [Clostridium difficile QCD-37x79]
          Length = 324

 Score = 49.8 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 67/216 (31%), Gaps = 21/216 (9%)

Query: 6   VIYDYETFGRDVALDRP--------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           +  D+E    D   ++P            GV VD ++  I++      KP  + +   + 
Sbjct: 5   LFIDFEFNILDDNKNKPKEYNGAELISIGGVLVDNEFNTIDNYYSL-VKPKYNKILSNKC 63

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T +          +        +++F   +   I YN   FD              +
Sbjct: 64  KNLTKLNQLDINNAPNLLY-VMDDFYKWFCKFDDVTI-YNWGDFDI---------TGLLT 112

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
               +       +L ++M  I  F        +    +    L ++     +E    H++
Sbjct: 113 SFRVYKYTGKCLELFNMMIDIQPF-ISQHITYNNRILSKQISLLNMKKIFSVEGDIKHNS 171

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            +D    + +        PK  + L +  NK    K
Sbjct: 172 LSDAVDLMNVCKCFFFNSPKNIDILEELYNKLPALK 207


>gi|158339338|ref|YP_001520515.1| exonuclease [Acaryochloris marina MBIC11017]
 gi|158309579|gb|ABW31196.1| exonuclease [Acaryochloris marina MBIC11017]
          Length = 159

 Score = 49.8 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 36/147 (24%), Gaps = 8/147 (5%)

Query: 5   FVIYDYE-----TFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAV 58
           ++I D E     TF          +   V ++    E I+   VF  KP           
Sbjct: 11  YLIVDLEATCCNTFSIPHKETETIEIGAVIIESVGLEIIDEFTVFI-KPIRHPNLTDFCT 69

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +T I             +      ++F      +         +   R   Y       
Sbjct: 70  ELTTIKQTDLEDAP-TFPQAVGTFKRWFEQYENSVFCSWGDYDKNQLERESKYHKIPYPM 128

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDG 145
                N   ++ L    +  Y  +   
Sbjct: 129 GGEHFNLKKQFSLALRTKKHYGMARAL 155


>gi|312199001|ref|YP_004019062.1| exonuclease RNase T and DNA polymerase III [Frankia sp. EuI1c]
 gi|311230337|gb|ADP83192.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EuI1c]
          Length = 238

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 16/152 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPAD------DYLPD 54
            +  V  D E  G D A D   + A +  D +   +    ++    P          + D
Sbjct: 13  MDRLVWIDCEMTGLDPASDVLLEVACLVTDGELNVVGDGVDLVISAPDPVLETMVPVVRD 72

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIF 110
             A    G+T +      +  AE  +++  +            +  N+I  D  +     
Sbjct: 73  MHATS--GLT-EAVRASTLTVAEAEQQVLAYVRTLVPENRRAPLCGNSIATDRTFL--AR 127

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
           Y    DSY        S    L       A+ 
Sbjct: 128 YMPELDSYLHYRMIDVSSVKELARRWYPRAYY 159


>gi|227487575|ref|ZP_03917891.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092557|gb|EEI27869.1| DNA polymerase III subunit epsilon [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 310

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 8/102 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVFI 60
              FV  D+ET   +            R D + +  ++       P  D    +P  V++
Sbjct: 1   MQEFVSIDFET--ANEQRRSACAVGMARFDAEGKLADTYYTLLH-PHPDVDYFNPVNVWV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
            GIT           ++ +  +  F        I  +N+ FD
Sbjct: 58  HGITQDDVHDAPQ-WSDVADDVALFI---GERPIVAHNMAFD 95


>gi|330999159|ref|ZP_08322878.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329575359|gb|EGG56903.1| putative DNA polymerase III, epsilon subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 248

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 56/180 (31%), Gaps = 26/180 (14%)

Query: 20  DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
           DR  +   V +       ++   +      +   + E + +  IT +  +      A+ +
Sbjct: 7   DRIIEIGCVELGEHGLTDKNFHEY---IDPERQMEAEVIRVHKITNEFLVGKPK-FADIA 62

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
            +  +F       I   +N +FD  +      +    S        ++  D +++ +A +
Sbjct: 63  DKFIEFVQGARLII---HNAQFDIGFLNEELRKLGKPSMEEIC-GKDNIIDSMELAKAAF 118

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHV----NAHDAKADVYATLALVWLIREKK 195
               +               L  L     I+        H A  D      +  ++++++
Sbjct: 119 PQMHN--------------SLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYLVLKQQQ 164


>gi|297825941|ref|XP_002880853.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297326692|gb|EFH57112.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 223

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 9/115 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFI 60
               V  D E  G +V +DR  + A +  D    K             D L    E    
Sbjct: 44  KQPLVWIDLEMTGLNVEVDRILEIACIITDGNLTKSVEGPDLVVHQTKDCLDKMGEWCQT 103

Query: 61  T----GITPQKALRDGVVEAEFSRRIHQFFSVPNTC---IIGYNNIRFDDYYSRN 108
                G+T +K     + E E  +++ +F          ++  N++  D  + + 
Sbjct: 104 HHGDSGLT-KKVRLSTISEREAEQKVIEFVRKHVGSENPLLAGNSVYVDFLFLKK 157


>gi|260683450|ref|YP_003214735.1| putative exonuclease [Clostridium difficile CD196]
 gi|260687046|ref|YP_003218179.1| putative exonuclease [Clostridium difficile R20291]
 gi|260209613|emb|CBA63276.1| putative exonuclease [Clostridium difficile CD196]
 gi|260213062|emb|CBE04429.1| putative exonuclease [Clostridium difficile R20291]
          Length = 329

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 67/216 (31%), Gaps = 21/216 (9%)

Query: 6   VIYDYETFGRDVALDRP--------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           +  D+E    D   ++P            GV VD ++  I++      KP  + +   + 
Sbjct: 10  LFIDFEFNILDDNKNKPKEYNGAELISIGGVLVDNEFNTIDNYYSL-VKPKYNKILSNKC 68

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T +          +        +++F   +   I YN   FD              +
Sbjct: 69  KNLTKLNQLDINNAPNLLY-VMDDFYKWFCKFDDVTI-YNWGDFDI---------TGLLT 117

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
               +       +L ++M  I  F        +    +    L ++     +E    H++
Sbjct: 118 SFRVYKYTGKCLELFNMMIDIQPF-ISQHITYNNRILSKQISLLNMKKIFSVEGDIKHNS 176

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            +D    + +        PK  + L +  NK    K
Sbjct: 177 LSDAVDLMNVCKCFFFNSPKNIDILEELYNKLPALK 212


>gi|188590221|ref|YP_001919934.1| exonuclease family protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500502|gb|ACD53638.1| exonuclease family protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 303

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 19/175 (10%)

Query: 19  LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78
            +   +   ++VD+  +++      + KP+   + +P    IT IT     ++G+   + 
Sbjct: 36  ENEIIEIGAIKVDKYMKQVAEMRE-YIKPSVFPVMNPIVTNITKITMDTLQKEGITFKQG 94

Query: 79  SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138
             ++       +  +I             N  Y N+ D                      
Sbjct: 95  MDKLKGMIEDGD--VICSWAKDDIAEIIINSNYHNYTDLSWIK----------------E 136

Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE 193
           Y    +          A   K     L   +++   HDA  D   TL +   I  
Sbjct: 137 YLDLQEYSTKILGHKKAMGLKSALDELKIKVDNTKLHDALNDAEYTLLVFKHIYN 191


>gi|288928364|ref|ZP_06422211.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331198|gb|EFC69782.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
          Length = 165

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 26/175 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +   +       V V  + + ++S      +P  +Y  +   V + 
Sbjct: 1   MKDFAAIDFET--ANFKRESVCSVGLVLV-EEGKIVDSYYHLI-QPTPNY-FEERCVTVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T            +    I           +  +N  FD+   +  F     +   + 
Sbjct: 56  GLTTADTNGQP-TFPDVWAEIAPLIRNK---PLVAHNKAFDESCLKAAFAAYDMEYPDYP 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +      +  L   R              ++ G   F+L  +A   G E    H 
Sbjct: 112 F------YCTLLTARRK-----------LKESGLADFRLPTVASHCGYELDMHHH 149


>gi|15902940|ref|NP_358490.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae R6]
 gi|15458502|gb|AAK99700.1| DNA polymerase III, epsilon chain [Streptococcus pneumoniae R6]
          Length = 208

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R   +I++ + +                +
Sbjct: 17  EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 69

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +      +F    +  +IGYN  + D                  
Sbjct: 70  TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 119

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 120 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 166

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 167 ARMTARVYESFLESDQ 182


>gi|116494067|ref|YP_805801.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|191637384|ref|YP_001986550.1| DNA polymerase III, alpha subunit [Lactobacillus casei BL23]
 gi|227533296|ref|ZP_03963345.1| DNA polymerase III, epsilon subunit like 3'-5' exonuclease
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|116104217|gb|ABJ69359.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|190711686|emb|CAQ65692.1| DNA polymerase III, alpha subunit [Lactobacillus casei BL23]
 gi|227189092|gb|EEI69159.1| DNA polymerase III, epsilon subunit like 3'-5' exonuclease
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|327381428|gb|AEA52904.1| DNA polymerase III alpha subunit [Lactobacillus casei LC2W]
 gi|327384594|gb|AEA56068.1| DNA polymerase III alpha subunit [Lactobacillus casei BD-II]
          Length = 172

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +VI D E    +   +R  Q + VR+       +    F   P+ D       +   
Sbjct: 1   MKEYVIMDTE---FNSTSNRAIQISAVRIRDGLHIADQFNRFI--PSPDKFDQLHIIR-- 53

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
             T      D +      + +  + +   T I         D       ++        +
Sbjct: 54  --TSNMRYSDYLALPSLQQTVRDYVAWMRTTIDIVGWSIEGDAGRIRETFKKGSHGIPKN 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W       D+ D++   Y+F+                 LQ LA   GI     H+A  D 
Sbjct: 112 WKF----IDIADIVEKRYSFNATPP-------------LQGLANVLGIPVNRTHNALDDC 154

Query: 182 YATLALVWLIREKKPKLF 199
             T  ++  +  +  KLF
Sbjct: 155 LRTFGVIKALESRDGKLF 172


>gi|321477963|gb|EFX88921.1| hypothetical protein DAPPUDRAFT_311056 [Daphnia pulex]
          Length = 349

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 51/193 (26%), Gaps = 21/193 (10%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +VI DYE                +F  V ++ ++ E  +     +C+P  + L       
Sbjct: 116 YVIIDYEATCELLKHSNFKQEIIEFPAVLLNCQKGEVEDEFRS-YCRPVLNPLLTEFCTE 174

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT     +  +   E      ++                    S+  F       + 
Sbjct: 175 LTGITQDDVDKAPLFH-EVLTSFEEWLQK-------------KKLGSKYSFAIVTDGPWD 220

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAK 178
             +   N              +  +  +  +         L  +    G E    AH   
Sbjct: 221 IGYFLKNQCALSKIEFPTYCKYWINIRKTFANFYNTGKMPLSTMIQLIGREFQGRAHSGL 280

Query: 179 ADVYATLALVWLI 191
            D      +V  +
Sbjct: 281 DDARNIAFIVQRL 293


>gi|145588712|ref|YP_001155309.1| oligoribonuclease [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047118|gb|ABP33745.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 195

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 35/126 (27%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
           + H +  D E  G +   +R  + A +  D     I +  V+     D  L   +A    
Sbjct: 16  SEHLIWVDMEMSGLNPETERILEIAIIVTDAHLNTIATAPVWVVHQDDAILDAMDAWNKG 75

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +    K     + EA        F           +  N I  D  +      +  
Sbjct: 76  THGRSGLIDKVKTSTLDEAAVEAECIAFLKQYIKAGIAPMCGNTIGQDRRFMAKYMPKLE 135

Query: 115 YDSYRW 120
              +  
Sbjct: 136 AYFHYR 141


>gi|302062272|ref|ZP_07253813.1| oligoribonuclease [Pseudomonas syringae pv. tomato K40]
          Length = 107

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 4/94 (4%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
            + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4  KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT 91
            G +   Q+     +  A+   +   F  +   
Sbjct: 64 QHGGSGLTQRVRESTISMADAEAQTLAFIKLWVP 97


>gi|296491911|ref|YP_003662378.1| hypothetical protein XNC1_p0095 [Xenorhabdus nematophila ATCC
           19061]
 gi|289176798|emb|CBJ92963.1| Ycg4D (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 181

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 11/107 (10%)

Query: 18  ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAE 77
             D+  + A    D   + +        +        P A+ + GI+      + +   +
Sbjct: 10  ERDQVIELA--VTDIWGDVL-----LNTRLWPTVKISPNAMDVHGISEADLTNEPM-WPQ 61

Query: 78  FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +  + Q  S     ++ +N+  FD    R            W   N
Sbjct: 62  IAPALAQLLS--GRHVVIFNS-SFDSRLLRQTAGAFGDYMPWWEEKN 105


>gi|156546675|ref|XP_001603963.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis]
          Length = 185

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 7/121 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPAD-DYLPDPEAVFI 60
           +  +  D E  G +V  D+  + A +  D Q   + +  ++   +  D      P     
Sbjct: 10  DRIIWIDLEMTGLNVMQDKILEVASIITDDQLNIVSDEFQMVIHQSEDVFETMIPWCQEQ 69

Query: 61  TGITPQKALRDGVVEAEFS--RRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
              T         +  E      + +FF      NTC +  + +  D  + +    R F 
Sbjct: 70  HNKTGLIEASRNSIFNEEMAEEELIRFFRKYVPHNTCPLAGSCLYMDRAFLQQHMPRVFE 129

Query: 116 D 116
            
Sbjct: 130 Y 130


>gi|195573238|ref|XP_002104602.1| GD18354 [Drosophila simulans]
 gi|194200529|gb|EDX14105.1| GD18354 [Drosophila simulans]
          Length = 208

 Score = 49.8 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 19/129 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDPE 56
            V  D E  G D+  D+  + A +  D+            I   +  +    +       
Sbjct: 35  IVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDSMNEWC----- 89

Query: 57  AVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFY 111
            +     +    +     V   E S  +  +         C +G N++  D  +      
Sbjct: 90  -MEQHYKSGLIDRCKSSDVKPEEASNLVLSYIEKNIPKGVCPLGGNSVYTDRLFIMKFMP 148

Query: 112 RNFYDSYRW 120
                 +  
Sbjct: 149 LVNDYLHYR 157


>gi|156551223|ref|XP_001602293.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis]
          Length = 188

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFIT 61
           N  V  D E  G  V  DR  + A +  D     + +       +  D+     E     
Sbjct: 8   NRIVWIDMEMTGLAVESDRILEVACLITDENLNIVSDEFHQVLHQSDDELARMNEWCQEH 67

Query: 62  GITPQKALRDGVV---EAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
                           E    + ++ F +       C +  N++  D  + R     +  
Sbjct: 68  HTKSGLVEASKKSQEDERSVDKSLYNFLNKYIPKGRCPMAGNSVYMDRLFLRKYMPTSNE 127

Query: 116 DSYRW 120
             +  
Sbjct: 128 YMHYR 132


>gi|241195978|ref|YP_002969533.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|240250532|gb|ACS47471.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis DSM
           10140]
          Length = 217

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 19/128 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----AVFI- 60
           +  D E  G D+  D   + + V  D +   ++       KP++  +   +    A+   
Sbjct: 18  IWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDKGIDLVIKPSEAAVAHMDDFVRAMHTR 77

Query: 61  --------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                    G++ Q+A      E +    + QF       ++  N++  D  +       
Sbjct: 78  SGLIDEWENGLSVQEA------ERQVIDYVQQFIPQGVKPLLAGNSVGSDKKFLDRFMPN 131

Query: 113 NFYDSYRW 120
                +  
Sbjct: 132 LMEYLHYR 139


>gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           Hall]
 gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 19397]
 gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. Hall]
          Length = 309

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +FV  D+ET   +   + P     V V +  E +E       KP +     P  + I GI
Sbjct: 2   NFVAIDFET--ANEKRNSPCSIGIVVV-KDGEIVEKVHYLI-KPKEMRFM-PINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P     + +   +   +I  +F+     ++  +N  FD    R+             ++
Sbjct: 57  RPHMVQDE-LEFDKIWGKIKGYFNNN---LVIAHNASFDMSVLRSTLKL---------YN 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                ++ +  M+    F  +              +L  +    G +    HDA AD  A
Sbjct: 104 IKMPSFEYICTMKLSKNFYSNIDN----------ARLNTVNNFLGYKF-KYHDALADAMA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|330860723|emb|CBX71015.1| exodeoxyribonuclease 10 [Yersinia enterocolitica W22703]
          Length = 220

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 52/190 (27%), Gaps = 38/190 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET G         + A + V      + +        + D     +A+ I  IT
Sbjct: 3   FRVIDTETCGL---EGGIVEIASIDVMDGA--LSNPMSDLV--SPDRPISLDAMVIHHIT 55

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +            +  + ++    +   + +N              R         W  
Sbjct: 56  EEMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW-- 97

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                 +L + R +Y         P         +       +  +++  H A  D Y T
Sbjct: 98  ----ICMLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVT 144

Query: 185 LALVWLIREK 194
            AL+  I   
Sbjct: 145 AALLQRIMRD 154


>gi|302848573|ref|XP_002955818.1| hypothetical protein VOLCADRAFT_66302 [Volvox carteri f.
           nagariensis]
 gi|300258786|gb|EFJ43019.1| hypothetical protein VOLCADRAFT_66302 [Volvox carteri f.
           nagariensis]
          Length = 196

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 57/199 (28%), Gaps = 35/199 (17%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPEA--VF 59
           N  V  D E  G D+  D   + A +  D   + ++           DD L +  A    
Sbjct: 17  NPLVWVDLEMTGLDIERDTIIEVACIITDGDLKHEVLGPATAIHA-DDDVLDNMNAWCKE 75

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     V  A+    +  F S   T     +  N+I  D  +      R  
Sbjct: 76  HHGKSGLTQRVRETHVTMAQAEDELLAFISGHTTENMAQLAGNSIHVDRMFLLKYMPRVV 135

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                          D+  +      +       P     A   KL             A
Sbjct: 136 AYLNYR-------IVDVSSIKELARRWY------PKAYKNAPRKKL-------------A 169

Query: 175 HDAKADVYATLALVWLIRE 193
           H A +D+  ++  +   R+
Sbjct: 170 HTALSDIRESIEELKYYRK 188


>gi|291303079|ref|YP_003514357.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572299|gb|ADD45264.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia
           nassauensis DSM 44728]
          Length = 226

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 43/178 (24%), Gaps = 26/178 (14%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
           R    A V      + + S                 A  + GI+ + A  +G   A    
Sbjct: 27  RIVTAAIV----NGDDVASWL-----INPGIDIPAAASNVHGISTEHARANGTEPALALS 77

Query: 81  RIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138
            I +  +        +      +D     +   R       W        + L       
Sbjct: 78  EIGRALTKAAEEDTPVVVYRAGYDLTLLSHELDRYSLPQVPWERLKVLDPFVLDKKADKF 137

Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196
                                L  +     ++   AH A AD  A ++L   I ++  
Sbjct: 138 R---------------RGKRTLSAVCTHYDVDLSGAHSADADARAAVSLARAIGQRHK 180


>gi|221234528|ref|YP_002516964.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
 gi|220963700|gb|ACL95056.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
          Length = 209

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 45/166 (27%), Gaps = 28/166 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D+ET         P       ++    ++   E  + +P          +   GI P
Sbjct: 11  IAIDFET--ASEQRASPCSIGLAWIEDG--EVARVEHHYIRP-PGNRFAAFNMAFHGIRP 65

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          +   RI          ++  +N  FD    R         +        
Sbjct: 66  EHVADADE-WPDVLERIRPELE---GALVLAHNASFDISVIRRTCEHYDVPAPG------ 115

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
              +D L  ++   +  P+            S KL  +    G++ 
Sbjct: 116 ---FDYLCTVQVARSVWPEL----------PSHKLNVVCGHLGVDF 148


>gi|168485945|ref|ZP_02710453.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571068|gb|EDT91596.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
           CDC1087-00]
          Length = 196

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R   +I++ + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGREIDAYDSY---VHTSVSLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +      +F    +  +IGYN  + D                  
Sbjct: 58  TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYESFLESDQ 170


>gi|126699399|ref|YP_001088296.1| putative exonuclease [Clostridium difficile 630]
 gi|115250836|emb|CAJ68660.1| putative exonuclease [Clostridium difficile]
          Length = 329

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 67/216 (31%), Gaps = 21/216 (9%)

Query: 6   VIYDYETFGRDVALDRP--------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           +  D+E    D   ++P            G+ VD ++  I++      KP  + +   + 
Sbjct: 10  LFIDFEFNILDDNKNKPKEYNGAELISIGGILVDNEFNTIDNYYSL-VKPKYNKILSNKC 68

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T +          +        +++F   +   I YN   FD              +
Sbjct: 69  KNLTKLNQLDINNAPNLLY-VMDDFYKWFCKFDDVTI-YNWGDFDI---------TGLLT 117

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
               +       +L ++M  I  F        +    +    L ++     +E    H++
Sbjct: 118 SFRVYKYTGKCLELFNMMIDIQPF-ISQHITYNNRILSKQISLLNMKKIFSVEGDIKHNS 176

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            +D    + +        PK  + L +  NK    K
Sbjct: 177 LSDAVDLMNVCKCFFFNSPKNIDILEELYNKLPALK 212


>gi|73985877|ref|XP_541894.2| PREDICTED: similar to three prime repair exonuclease 1 isoform b
           [Canis familiaris]
          Length = 314

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 63/207 (30%), Gaps = 29/207 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDR---------------QWEKIESTEVFFCKP 47
              +  D E  G   +  +  +   + V R                       +      
Sbjct: 12  QTLIFLDLEATGLPSSQPKVTELCLLAVHRCALESSPTPQGQRPTVPPPPRVVDKLSLCV 71

Query: 48  ADDYLPDPEAVFITGITPQKALRDG--VVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDD 103
           A      PEA  ITG++       G    +A+ +  +  F        C++ +N  R+D 
Sbjct: 72  APGKACSPEASKITGLSTAVLAAHGRQRFDADLANLLQAFLRRQPQPWCLVAHNGDRYDF 131

Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              +             S  +G    D +  ++     + +    PS      S+ L  +
Sbjct: 132 PLLQAELAVLGL----ASILDGAFCVDSIAALK-----ALEQAASPSEHGPRKSYSLGSI 182

Query: 164 -ALANGIEHVNAHDAKADVYATLALVW 189
                G    ++H A+ DV A L++  
Sbjct: 183 YTRLYGQAPPDSHMAEGDVLALLSICQ 209


>gi|16125770|ref|NP_420334.1| exonuclease [Caulobacter crescentus CB15]
 gi|13422904|gb|AAK23502.1| exonuclease [Caulobacter crescentus CB15]
          Length = 202

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 45/166 (27%), Gaps = 28/166 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D+ET         P       ++    ++   E  + +P          +   GI P
Sbjct: 4   IAIDFET--ASEQRASPCSIGLAWIEDG--EVARVEHHYIRP-PGNRFAAFNMAFHGIRP 58

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          +   RI          ++  +N  FD    R         +        
Sbjct: 59  EHVADADE-WPDVLERIRPELE---GALVLAHNASFDISVIRRTCEHYDVPAPG------ 108

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
              +D L  ++   +  P+            S KL  +    G++ 
Sbjct: 109 ---FDYLCTVQVARSVWPEL----------PSHKLNVVCGHLGVDF 141


>gi|28872064|ref|NP_794683.1| oligoribonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213967916|ref|ZP_03396062.1| oligoribonuclease [Pseudomonas syringae pv. tomato T1]
 gi|301384436|ref|ZP_07232854.1| oligoribonuclease [Pseudomonas syringae pv. tomato Max13]
 gi|302132276|ref|ZP_07258266.1| oligoribonuclease [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999378|sp|Q87VI6|ORN_PSESM RecName: Full=Oligoribonuclease
 gi|28855317|gb|AAO58378.1| oligoribonuclease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213927259|gb|EEB60808.1| oligoribonuclease [Pseudomonas syringae pv. tomato T1]
 gi|331014602|gb|EGH94658.1| oligoribonuclease [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 178

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  A+   +   F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTISMADAEAQTLAFIKLWVPERSSPICGNSICQDRRFLYRHMPALE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|289177467|gb|ADC84713.1| Hypothetical protein BIF_00664 [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 467

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 55/207 (26%), Gaps = 34/207 (16%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVD---------------------RQWEKIESTEVFFCK 46
            D ET G     D        R++                           +S   F   
Sbjct: 241 IDIETTGTSAWRDYIIDVGFERMNLQTPAPEGAKARDVYSETDYAADGAYDQSRLSFGVP 300

Query: 47  PADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
                + +P    +TGI   K   +  +  E+ R                +N  F+  + 
Sbjct: 301 LRCAEVANPFIAQLTGIDVTKIAGEP-IFDEWPRMQQALLERLMQQPYVAHNATFEHRFF 359

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
                    + Y  ++ NG     +LD M     +  D    PS         L+  A  
Sbjct: 360 MANV-----EGYAEAYRNG--EITILDTMPMSRHW--DAGSVPSPGHPHGDNTLEAYAKR 410

Query: 167 NGIEHVNAHD---AKADVYATLALVWL 190
            G    N+H+      D +  L  +  
Sbjct: 411 QGALDGNSHERHLGLEDAHIMLVAMRH 437


>gi|172041073|ref|YP_001800787.1| oligoribonuclease [Corynebacterium urealyticum DSM 7109]
 gi|171852377|emb|CAQ05353.1| putative oligoribonuclease [Corynebacterium urealyticum DSM 7109]
          Length = 209

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 18/188 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           +  V  D E  G D       + A +  D +   ++          +D L   D     +
Sbjct: 11  DRIVWADCEMTGLDPDRHVLVEIAVIVTDAELRPLDEGIDLVIHATEDELAEMDDFVQNM 70

Query: 61  T---GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRN 113
               G+T ++     +  AE  +++ ++            +  N+I  D  +     Y  
Sbjct: 71  HARSGLT-EQIRESTLSLAEAEQQVLEYVQRYVEVERAAPLAGNSIGTDRRFI--AKYMP 127

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D +        S    L        ++           G +   L D+  +       
Sbjct: 128 KLDEFLHYRMIDVSSIKELARRWYPKVYAG------QPQKGLSHRALADIQESIQELAFY 181

Query: 174 AHDAKADV 181
            H    D 
Sbjct: 182 RHAIMVDA 189


>gi|124005323|ref|ZP_01690164.1| exonuclease [Microscilla marina ATCC 23134]
 gi|123989145|gb|EAY28723.1| exonuclease [Microscilla marina ATCC 23134]
          Length = 180

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 7/127 (5%)

Query: 3   NHFVIYDYETF---GRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           +  ++ D E+    G      +    +      D +  + ES E    KP    +  P  
Sbjct: 6   DKILVIDVESTCWQGPPPEGQVSEIIEIGICVFDLKERQRESREGILVKPTQSEV-SPFC 64

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T ITP+    +GV   E + RI +        + G         + RN   R     
Sbjct: 65  TELTTITPELIDAEGVDLKE-ACRILRKKYESQQRVWGSWGDYDRRQFERNCKNRGIGYP 123

Query: 118 YRWSWDN 124
           +  +  N
Sbjct: 124 FGTNHLN 130


>gi|322500702|emb|CBZ35779.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 502

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 68/240 (28%), Gaps = 21/240 (8%)

Query: 9   DYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           D+E     G         +F  V +D      +      + +P  +         +TGIT
Sbjct: 227 DFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFH-RYVRPLRNPKLTAFCTELTGIT 285

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPN----TCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            +              +   +              +       +  ++   R  YD +  
Sbjct: 286 QEMVDVAD-PLPTVVAQFQDWLKTEVYPLCRMWARHYGPNRLSHNLKSEQRRFVYDEHTD 344

Query: 121 SWDNGNSRWDLLDVM----RAIYAFSPDGIQWPSRDDGATS-FKLQDLALANGIEHVNAH 175
           +     S   ++ +       +  F  +        D     ++  ++  +   +H    
Sbjct: 345 AAKANTSAEAMICMATDGPWDMRRFMHECSVLRDGVDFPPVCYRYINVRHSY-SDHFKCR 403

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
            AK     T  L  +    + +    + D RN  ++   +  +    + HVS +  A R 
Sbjct: 404 QAKL----THMLKKMSMSFEGRRHSGIDDTRNIARVLAELFARGYR-VHHVSTIKYAHRG 458


>gi|310830415|ref|YP_003965516.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
 gi|309249882|gb|ADO59448.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2]
          Length = 193

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 33/128 (25%), Gaps = 8/128 (6%)

Query: 4   HFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +++I D E           +   +   V++D     +   + F  KP          + +
Sbjct: 2   NYIIVDLEATCWENDRSKRNEIIEIGAVKLDDHLNVVSEFQAF-VKPKLYPQLSEFCMQL 60

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           T I           E      +  F S   +     +   +D    ++    +   +   
Sbjct: 61  TSIEQHDVDHAATFE----TVLEDFQSWMGSNYWLCSWGYYDKKQLKSDCDLHKQPTSWL 116

Query: 121 SWDNGNSR 128
                   
Sbjct: 117 RNHISIKH 124


>gi|327194608|gb|EGE61458.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli
           CNPAF512]
          Length = 224

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 28/166 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D+ET   +             +D    ++   E    +P  D       + I GI P
Sbjct: 32  IAIDFET--ANEQRGSACSVGLAWIDEG--RVTRVEERLIRPR-DMRFSGMNIAIHGIRP 86

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          E     H+  S      +  +N  FD        +R   D YR S+   
Sbjct: 87  EHVEDAPE-FPEVMDEFHEDIS---GATMIAHNAAFDFSV-----WRASLDLYRQSY--- 134

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                    +  + +       WP       S +L  +A   G+  
Sbjct: 135 -------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRF 169


>gi|323353934|gb|EGA85787.1| Rex2p [Saccharomyces cerevisiae VL3]
          Length = 229

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 21/136 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KP 47
              V  D E  G D   DR  +   +  D     +       +S              K 
Sbjct: 13  KPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMBKM 72

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
            +  +         G+T +    +  +   E E    I  +    N  ++  N++  D  
Sbjct: 73  NEWCIEHHGNS---GLTAKVLASEKTLAQVEDELLEYIQXYIPDKNVGVLAGNSVHMDRL 129

Query: 105 YSRNIFYRNFYDSYRW 120
           +    F +     +  
Sbjct: 130 FMVREFPKVIDHLFYR 145


>gi|262379336|ref|ZP_06072492.1| ribonuclease T [Acinetobacter radioresistens SH164]
 gi|262298793|gb|EEY86706.1| ribonuclease T [Acinetobacter radioresistens SH164]
          Length = 219

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 57/211 (27%), Gaps = 31/211 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +  D + + I          P +    D  ++   G
Sbjct: 23  VVVDVETAGFNAQTDALLEIACIPIIYDEEGKFIPGPAYHAHINPFEGANLDRRSLDFIG 82

Query: 63  ITP------QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           + P        A  +        + IH           I+  +N  FD  + +    R+ 
Sbjct: 83  VDPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQAAINRSG 142

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172
                    N    + + D +          +             L    L  GIE    
Sbjct: 143 -----TKNQNPFHSFSVFDTVTLSALMFGQTV-------------LAKSCLQAGIEFDGK 184

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLY 203
            AH A  D   T  L   I  K         
Sbjct: 185 EAHSALYDTQKTAELFCYILNKLAPQLLDTL 215


>gi|229005847|ref|ZP_04163541.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4]
 gi|228755311|gb|EEM04662.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4]
          Length = 286

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 47/172 (27%), Gaps = 28/172 (16%)

Query: 26  AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQF 85
           A VR  R  E  +    F      +         +TGIT  +      +  E       F
Sbjct: 2   AAVRY-RNHELADQFVSF---VNPERFIPNRITSLTGITNYRVSGAPTI-QEVLPLFLAF 56

Query: 86  FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDG 145
                   I  +N  FD  + ++                 N   D + + +         
Sbjct: 57  L---GEDTIVAHNASFDMRFLKSNANMLRLPEP------KNIVIDTVFLAKRY------- 100

Query: 146 IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPK 197
                    A + KL+ L    GI    +H+A  D     A+       + +
Sbjct: 101 ------MKHAPNHKLETLKRMLGIRLS-SHNALDDCITCAAVYQKCAAIQEE 145


>gi|206975330|ref|ZP_03236243.1| exonuclease family protein [Bacillus cereus H3081.97]
 gi|217960931|ref|YP_002339499.1| exonuclease [Bacillus cereus AH187]
 gi|206746232|gb|EDZ57626.1| exonuclease family protein [Bacillus cereus H3081.97]
 gi|217064747|gb|ACJ78997.1| exonuclease family protein [Bacillus cereus AH187]
          Length = 281

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 64/261 (24%), Gaps = 29/261 (11%)

Query: 1   MTNH--FVIYDYETFGRDVAL----DRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
           M N   F+++D E                    V+++    + I                
Sbjct: 1   MKNTTHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEASTMKIIGEFSEL---VKPGARL 56

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +TGIT +  +       +   R  QF    ++  + +   + D  +  +    +
Sbjct: 57  TRHTTKLTGITKKDLMNVEK-FPQIIERFIQFIGE-DSIFVTW--GKEDYRFLSHDCTLH 112

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             +           R DL   +   Y    +    PS         L        I    
Sbjct: 113 GVECPCME---KERRIDLQKFVFQAYEELFE--HTPSLQSAVEQLGL--------IWEGK 159

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
            H A AD   T  ++     ++    +    +     ++     +     +         
Sbjct: 160 QHRALADAENTANILLKAYSERDIT-KRYKRHGELELVKDGKLTEKAKKKMRKWVFKEMR 218

Query: 234 RSNTALIAPVAWHPRYKDSVI 254
           ++         +        I
Sbjct: 219 KNTERPFVWSTFESSDTWESI 239


>gi|21355135|ref|NP_651184.1| CG10214 [Drosophila melanogaster]
 gi|11133808|sp|Q9VCI0|ORN_DROME RecName: Full=Probable oligoribonuclease
 gi|7301049|gb|AAF56185.1| CG10214 [Drosophila melanogaster]
 gi|16769160|gb|AAL28799.1| LD18757p [Drosophila melanogaster]
 gi|220942706|gb|ACL83896.1| CG10214-PA [synthetic construct]
 gi|220952944|gb|ACL89015.1| CG10214-PA [synthetic construct]
          Length = 211

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 15/115 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDPE 56
            V  D E  G D+  D+  + A +  D+            I   +  +    +  +    
Sbjct: 38  IVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDSMNEWCMKHHY 97

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRN 108
              +      +     V   E S  +  +         C +G N++  D  +   
Sbjct: 98  NSGL----IDRCKSSDVNLEEASNLVLSYLEKNIPKRACPLGGNSVYTDRLFIMK 148


>gi|300024532|ref|YP_003757143.1| exonuclease RNase T and DNA polymerase III [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526353|gb|ADJ24822.1| Exonuclease RNase T and DNA polymerase III [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 225

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 31/130 (23%), Gaps = 15/130 (11%)

Query: 3   NHFVIYDYETFGR------DVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYL 52
              +  D ET G           DR         D               F         
Sbjct: 22  QRILFVDTETTGLRRPSAASEDHDRVISIGFFDTDASALQAGFCRGKFGYFIF--NPQQA 79

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
               A  + G + +   +     A  +  +   F   +  +I  +N  FD  +  + F  
Sbjct: 80  SAAGARRVHGYSDRILAQQD-TFASCADMLFPAF--GSADLIVSHNTDFDRPFVESEFAG 136

Query: 113 NFYDSYRWSW 122
                   SW
Sbjct: 137 AGRSLRGKSW 146


>gi|322488730|emb|CBZ23977.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 405

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 51/189 (26%), Gaps = 17/189 (8%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
            ++ D E               +  GV +D +  +++    F         P   P    
Sbjct: 76  IIVVDVEATCEQNARSYPHEVIEIPGVLIDVRTGQVDRARSFHTFVKPWRNPRLTPFCTQ 135

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT Q  +       E  +   +++    T   G   I   D       + + +   R
Sbjct: 136 LTGIT-QVVVDAAPSITEAIQLFEKWYRE--TIPRGAKTIFAADGPWDFKNFIHEHHILR 192

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                 +  ++ LD+          G+                L   N       H+   
Sbjct: 193 DHVSFPSIFYEYLDIRTTFAHRLNHGVPIKLDAM---------LRKMNLRFDGRPHNGFD 243

Query: 180 DVYATLALV 188
           D Y    L 
Sbjct: 244 DAYNIARLA 252


>gi|269469132|gb|EEZ80677.1| oligoribonuclease [uncultured SUP05 cluster bacterium]
          Length = 180

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 12/36 (33%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          + +  D E  G     D   + A V  D+    +  
Sbjct: 6  NLIWIDLEMTGLIPEKDVIIEIATVVTDKDLNVLAE 41


>gi|255320382|ref|ZP_05361566.1| ribonuclease T [Acinetobacter radioresistens SK82]
 gi|255302577|gb|EET81810.1| ribonuclease T [Acinetobacter radioresistens SK82]
          Length = 215

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 57/211 (27%), Gaps = 31/211 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +  D + + I          P +    D  ++   G
Sbjct: 19  VVVDVETAGFNAQTDALLEIACIPIIYDEEGKFIPGPAYHAHINPFEGANLDRRSLDFIG 78

Query: 63  ITP------QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           + P        A  +        + IH           I+  +N  FD  + +    R+ 
Sbjct: 79  VDPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQAAINRSG 138

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172
                    N    + + D +          +             L    L  GIE    
Sbjct: 139 -----TKNQNPFHSFSVFDTVTLSALMFGQTV-------------LAKSCLQAGIEFDGK 180

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLY 203
            AH A  D   T  L   I  K         
Sbjct: 181 EAHSALYDTQKTAELFCYILNKLAPQLLDTL 211


>gi|218680718|ref|ZP_03528615.1| dephospho-CoA kinase protein [Rhizobium etli CIAT 894]
          Length = 238

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV 28
           +I+D ET G D   DR  +  G+
Sbjct: 206 IIFDTETTGLDNRADRIIEIGGI 228


>gi|320321892|gb|EFW77988.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331003|gb|EFW86977.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330872242|gb|EGH06391.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 178

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  AE   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTINMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|288923313|ref|ZP_06417448.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
 gi|288345349|gb|EFC79743.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f]
          Length = 210

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 14/151 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
            +  V  D E  G D   D   + A +  D +   ++          +    +       
Sbjct: 13  MDRLVWIDCEMTGLDAGSDLLLEVACLVTDSELNVLDEGIDLVLGAPDAALDQMLPVVKE 72

Query: 54  DPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
             EA  +T  T  +A    V EAE      I +F        +  N+I  D  +     Y
Sbjct: 73  MHEASGLT--TAVRASELKVDEAEKQLLAYIRRFVPDSRKAPLCGNSIATDRTFI--ARY 128

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
               D +        S    L       A+ 
Sbjct: 129 LPQLDEFLHYRMIDVSSIKELARRWYPRAYY 159


>gi|218528419|ref|YP_002419235.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           chloromethanicum CM4]
 gi|218520722|gb|ACK81307.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           chloromethanicum CM4]
          Length = 297

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 49/183 (26%), Gaps = 29/183 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET   +   D         +  +  ++   E    +P       P  + + GI P
Sbjct: 4   VAIDFET--ANERRDSACAVGLAWI--EGGRVARRESRLIRP-PQLRFSPGNIRVHGILP 58

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      E    I +F    +  ++  +N  FD                   W   
Sbjct: 59  ADVRDAP-TFPEV---IAEFLPDLSGGLMLAHNAGFDMGVLAASLAA---------WGEP 105

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                    ++      PD               L  +A   GI   + HDA  D +A  
Sbjct: 106 VPDMAGHCTLQIARRVFPD----------PAGHGLAKVAGRLGIRFEH-HDAGEDAFACA 154

Query: 186 ALV 188
            + 
Sbjct: 155 EIA 157


>gi|149235658|ref|XP_001523707.1| oligoribonuclease, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146452686|gb|EDK46942.1| oligoribonuclease, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 269

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 12/116 (10%)

Query: 5   FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPEAVFI 60
            V  D E  G DV   DR  +   +  D   E + +    E     P +      E    
Sbjct: 77  LVWVDCEMTGLDVLGEDRIIEICCIVTDENLEVLGNGDYYESTIYYPQETLDKMDEWCQT 136

Query: 61  T----GITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRN 108
           T    G+  +          +    + +F       P   I+  N++  D ++   
Sbjct: 137 THGQLGLIQRILDNPDRTLEKVQAELLEFLKKYISGPKIGIMAGNSVHMDKFFMMK 192


>gi|118595061|ref|ZP_01552408.1| putative DNA exonuclease X [Methylophilales bacterium HTCC2181]
 gi|118440839|gb|EAV47466.1| putative DNA exonuclease X [Methylophilales bacterium HTCC2181]
          Length = 220

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 46/192 (23%)

Query: 6   VIYDYETFGRDVALDRP-AQFAGVRVDRQWEKIESTE---VFFCKPADDYLPDPEAVFIT 61
           +I+D ET GR+   D    + A + +      I + E    F  +       +  A+   
Sbjct: 5   LIFDTETTGRN---DPVLIEAAWIEIRD----IANFELGTSFCERFNPGKPIELGALATH 57

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            I  ++ +                F++P  C  +  +NI +D                  
Sbjct: 58  HIYDEELVDCPP---------ASSFALPTPCEYLIGHNIDYDWNVVS------------- 95

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
                  R   L + R +         WP+ D  + S  +  L   N      NAH A+A
Sbjct: 96  --QPSLKRICTLALARKV---------WPNIDAYSQSALVYYLDRNNAKSILKNAHSAEA 144

Query: 180 DVYATLALVWLI 191
           DV    +++  +
Sbjct: 145 DVMICASILKQL 156


>gi|321476303|gb|EFX87264.1| hypothetical protein DAPPUDRAFT_312570 [Daphnia pulex]
          Length = 252

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 56/199 (28%), Gaps = 27/199 (13%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAG------VRVDRQWEKIESTEVFFCK-PADDYL 52
           N +V  D ET G     D   R  + +         ++    K+                
Sbjct: 43  NSYVFLDLETTGFITTEDPICRITELSMWGIEREQFLNCNGSKMPRITNRLNMCVDPSKE 102

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIF 110
             P A   + +           + + +  +  F +      C+I +   +FD    ++  
Sbjct: 103 IHPMAATKSKLDNLNLSHQSPFDEDVANTVLSFLNRLKKPMCMIAHYGFKFDFPVLKSEI 162

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGI 169
                D     +       D L V R   + +              S+ L+++       
Sbjct: 163 ANVGKD-----FSEDVFCADSLPVFRTCQSLAQGVPY---------SYTLENVYRRIYNN 208

Query: 170 EHVNAHDAKADVYATLALV 188
           +    H+A+ADV       
Sbjct: 209 QPEVMHEAEADVKMLFWAA 227


>gi|73977197|ref|XP_532608.2| PREDICTED: similar to prion protein interacting protein 1 isoform 1
           [Canis familiaris]
          Length = 219

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 13/176 (7%)

Query: 20  DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
               +F  ++++ +  +IEST   + +P       P    +TGI             +  
Sbjct: 45  GEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVL 103

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
            R+ ++ +                  +    +    D        G  ++  L V     
Sbjct: 104 ERVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFK 152

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYATLALVWLIREK 194
            +      +           L D+     ++H    H    D      ++  +  +
Sbjct: 153 QWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYQ 208


>gi|21672814|ref|NP_660881.1| oligoribonuclease [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008877|sp|Q8K909|ORN_BUCAP RecName: Full=Oligoribonuclease
 gi|21623465|gb|AAM68092.1| hypothetical oligoribonuclease [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 184

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLP-DPEAVFI 60
            + +  D E  G +  + R  + A V  D +   I     +   +  +  +  D     I
Sbjct: 6   ENLIWIDLEMTGLNSEIHRIIEIATVITDTKLNIISEGPVIAIHQKEEHIVIMDEWNTKI 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTC---IIGYNNIRFDDYYSRNIFYRNFY 115
                  ++  +    E++   +   F           I  N++  D  +          
Sbjct: 66  HKKNGLIKRVQKSIYNESKAESKTIFFLKKWVPIQSSPICGNSVYQDRKFLARYMPNLEN 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|153829541|ref|ZP_01982208.1| ribonuclease T [Vibrio cholerae 623-39]
 gi|148875001|gb|EDL73136.1| ribonuclease T [Vibrio cholerae 623-39]
          Length = 243

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V   +D   +    ST  F  +P +    +  A+  TG
Sbjct: 39  VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I++        +  +  II  +N  FD  +      R   
Sbjct: 99  IYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
                        +   D            +             L       G+E  N  
Sbjct: 159 K------RVPFHPFATFDTATLSGLAFGQTV-------------LAKACKTAGMEFDNRE 199

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  +
Sbjct: 200 AHSALYDTQKTAELFCTIVNQ 220


>gi|331083424|ref|ZP_08332536.1| hypothetical protein HMPREF0992_01460 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404117|gb|EGG83665.1| hypothetical protein HMPREF0992_01460 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 320

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/345 (11%), Positives = 96/345 (27%), Gaps = 35/345 (10%)

Query: 4   HFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           +++++D E      G++           +   V++D     ++S +    KP   +    
Sbjct: 2   NYIVFDLEWNQCPYGKEKENKKLPFEIIEIGAVKLDENRNIVDSFQEII-KPVVYHRLHF 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               I GIT  +   +G+      ++   F     T +        D    +       Y
Sbjct: 61  RTKEILGITSNRL-EEGISFKAAVKK---FLEWCGTDVKFCTWGSADLVELQRNLK---Y 113

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174
               +        +D+  +   IY            ++  T+  L+       ++  +  
Sbjct: 114 YRMLFLLKGPVFYYDVQKLFGLIY------------ENEKTTRSLEYAIDFLKMDKGDTF 161

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           H A  D + T  ++  I E   K    +  Y+N            +  +      F +  
Sbjct: 162 HQALNDAHYTAEILKKIPENFMKRNYSIDCYQNPKN-----KDSEIYTVFKDYSKFISRE 216

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            ++   A +          +    +     +  ++        +             IK+
Sbjct: 217 FSSKEEAMMDKEVTKTQCFLCKRTAKKKIRWFSVNPKSHLCLAYCPEHGCFKGKAR-IKK 275

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339
               K  ++  +    +          +   +   + R Q   + 
Sbjct: 276 TDEGKYYVVKTLKRIDEAEASEIREKREALRKKRRMKRHQEKKKK 320


>gi|21684660|gb|AAL87524.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 201

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 46/189 (24%), Gaps = 26/189 (13%)

Query: 15  RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVV 74
                 R A+   V +        +   F             A  + G+  +        
Sbjct: 1   LSPRYHRLAEVGCVEI-AGGRITGNY--FHSYINPCQRMTRGAQAVHGLKDEFLATQP-T 56

Query: 75  EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDV 134
               ++R+  F       ++G+N     ++    +    F                    
Sbjct: 57  FGAIAQRLLYFL--CGAVLVGHNLTFDLNFLDAGLVSAGFMP------------------ 96

Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYATLALVWLIR 192
                A   D ++  ++      F L DL    G+       H A  D           R
Sbjct: 97  AARYCAGVIDTMRHLAQRGSRRRFSLDDLCDRLGVRRGERARHGALEDAVLLAEAFVAAR 156

Query: 193 EKKPKLFEY 201
              P L ++
Sbjct: 157 RTHPSLGDH 165


>gi|238881963|gb|EEQ45601.1| oligoribonuclease, mitochondrial precursor [Candida albicans WO-1]
          Length = 237

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 17/133 (12%)

Query: 2   TNHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIES---------TEVFFCKPADDY 51
               V  D E  G DV  D    +   +  +   + ++           +    K  +  
Sbjct: 26  KKPLVWVDCEMTGLDVFGDDNIIEICCIITNEDLDIVDENGYESTIYYPKSRLDKMNEWC 85

Query: 52  LPDPEAVFITGITPQKALRDG----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
           +         G+T +          VVE E    I ++     T ++  N++  D ++  
Sbjct: 86  IETHGKS---GLTDKILANPDRKLSVVEDELLEYIKKYVPEVRTGLLAGNSVHMDRFFMM 142

Query: 108 NIFYRNFYDSYRW 120
             F +     +  
Sbjct: 143 KEFPKVIDHLHYR 155


>gi|255306817|ref|ZP_05350988.1| putative exonuclease [Clostridium difficile ATCC 43255]
          Length = 315

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 21/216 (9%)

Query: 6   VIYDYETFGRDVALDRP--------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           +  D+E    D   ++P            G+ VD ++  I++      KP  + +   + 
Sbjct: 5   LFIDFEFNILDDNKNKPKEYNGAELISIGGILVDNEFNTIDNYYSL-VKPKYNKILSNKC 63

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T +          +        +++F   +   I YN   FD              +
Sbjct: 64  KNLTKLNQLDINNAPNLLY-VMDDFYKWFCKFDDVTI-YNWGDFDI---------AGLLT 112

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
               +       +L ++M  I  F        +    +    L ++     ++    H++
Sbjct: 113 SFRVYKYTGKCLELFNMMIDIQPF-ISQHITYNNRILSKQISLLNMKKIFSVKGDIKHNS 171

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
            +D    + +        PK  + L +  NK    K
Sbjct: 172 LSDAVDLMNVCKCFFFNSPKNIDILEELYNKLPALK 207


>gi|158296273|ref|XP_557337.3| AGAP006662-PA [Anopheles gambiae str. PEST]
 gi|157016432|gb|EAL40132.3| AGAP006662-PA [Anopheles gambiae str. PEST]
          Length = 339

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 13/122 (10%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGV------RVDRQWEKIESTEVFFCKPADDYLP 53
             FV +D ET G         +  + + V       ++   E    T           + 
Sbjct: 5   KSFVFFDLETTGLPEYEHFRTKITELSMVACAREHLLEASTEPPRVTHKLSLCFNPHRMI 64

Query: 54  DPEAVFITGITPQKALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
              +   TG+      ++   +A   E  +   +    P  C++ +N  RFD    +   
Sbjct: 65  TLGSSQATGLYNDLLEKEAKFDANAGEMVKLFLERLQKP-VCLVAHNGQRFDFILLKQHL 123

Query: 111 YR 112
            R
Sbjct: 124 LR 125


>gi|156372383|ref|XP_001629017.1| predicted protein [Nematostella vectensis]
 gi|156216008|gb|EDO36954.1| predicted protein [Nematostella vectensis]
          Length = 222

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 57/204 (27%), Gaps = 19/204 (9%)

Query: 5   FVIYDYETFG-RDVALD---RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVF 59
            V+ D+E+   ++   +      +F  V V     E +     F   P +          
Sbjct: 8   LVVIDFESTCWKEKRRNSAPEIIEFPAVVVSTSTGEIVSEFRQF-VSPTEHSRLSEFCTK 66

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGY----NNIRFDDYYSRNIFY 111
           +TGIT  +    G+          ++            +      N    D         
Sbjct: 67  LTGITQDQV-DAGIPIGACLVLFSRWLKELQQLKGIRFMSDITRPNGRPIDQAKWAMSVT 125

Query: 112 RNFYDS-YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
            + +D       +    R  +   +R+         ++ SR     +  L+DL +     
Sbjct: 126 WSDWDIGICLKNECLRKRHLVPPELRSWIDLKATYKKFYSRKPDGLAGALKDLGIRFD-- 183

Query: 171 HVNAHDAKADVYATLALVWLIREK 194
               H    D   T AL W +   
Sbjct: 184 -GREHSGLDDARNTAALAWRMVRD 206


>gi|195449894|ref|XP_002072273.1| GK22765 [Drosophila willistoni]
 gi|194168358|gb|EDW83259.1| GK22765 [Drosophila willistoni]
          Length = 190

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 16/131 (12%)

Query: 2   TNHF-VIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYL 52
            N + V  D E  G D+  D+  + + +  D+            I   +  + +  +  +
Sbjct: 13  KNTYMVWMDLEMTGLDIQKDKILEVSCLITDKDLNIQSNGLSFAINHPQEVYEQMNEWCI 72

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNI 109
               A  +         +  V        I  +        TC++  N++  D  +    
Sbjct: 73  KQHYASGL----VDSCKKSTVTPEAAEDLILTYLKQNIPEKTCVLAGNSVYMDRLFLYKY 128

Query: 110 FYRNFYDSYRW 120
                   +  
Sbjct: 129 MPIVNKYLHYR 139


>gi|46105698|ref|XP_380564.1| hypothetical protein FG00388.1 [Gibberella zeae PH-1]
          Length = 215

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 32/127 (25%), Gaps = 9/127 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKP-ADDYLPDPEAVF 59
           +  V  D E  G D   D   +   +      E ++          P +     D     
Sbjct: 19  DPLVWIDCEMTGLDQDNDEIIEIYCIITTGNLEILDEEGFHAIIHFPQSRLDQMDEWCTK 78

Query: 60  IT---GITPQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                G+T          E         I +F       ++  N++  D  + R   Y+ 
Sbjct: 79  THAESGLTAAVLESTTTPEQAADALYEYITRFIPERKRGLLAGNSVHCDRAFLRREPYKR 138

Query: 114 FYDSYRW 120
                  
Sbjct: 139 VMRHLHH 145


>gi|73979366|ref|XP_539997.2| PREDICTED: similar to histone mRNA 3 end-specific exonuclease
           [Canis familiaris]
          Length = 349

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPELNTQLSDFCINL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIG-YNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++  +            CI+   +         +    R 
Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYCILTDGSWDMSKFLNIQCRLSRL 248

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 298


>gi|313203394|ref|YP_004042051.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312442710|gb|ADQ79066.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 182

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 50/190 (26%), Gaps = 30/190 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET         P +    +V+     I  ++ +  KPA     +P    + GI
Sbjct: 2   NFTAIDFET--AHAEF--PCEIGLTKVENG--IITKSQSWLIKPACFPYMNPWNQRVHGI 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +            E    +  +        +  +N  FD    R                
Sbjct: 56  SSADVSSA-STFEELWGELKLWIEN---DYLVAHNAAFDMRVLR---------------- 95

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
              S     D+      +               S  L  ++  + I   N H A  D  A
Sbjct: 96  ---SVLAYYDLAVPRTEYFCSVSISRKTWKHLPSHSLGVVSQFHNISF-NHHRAGDDARA 151

Query: 184 TLALVWLIRE 193
              +     +
Sbjct: 152 CAIIALKAFD 161


>gi|148244527|ref|YP_001219221.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326354|dbj|BAF61497.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 223

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 58/205 (28%), Gaps = 31/205 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV 58
               ++ D ET G   +         +      E I+       K  +   P+    ++V
Sbjct: 1   MERLIVLDTETTGIKPSEGH-----RIIEIGCIEIIDRQITKNNKYHEYIQPNRNVGDSV 55

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I GIT +   +       F   + +F +      +  +N  FD  +  +       +  
Sbjct: 56  RIHGITDKFLTKKPK----FKEVVEEFLAYIKETTLIIHNAPFDLGFLNHELKLIGINER 111

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                +  +  D L++ +     +                 L  L     I+      H 
Sbjct: 112 IE---DKCTIIDSLELSKQQRPGTL--------------HNLDSLCRRFKIDSSARTVHG 154

Query: 177 AKADVYATLALVWLIREKKPKLFEY 201
           A  DV     +   +   +  LF  
Sbjct: 155 ALLDVQILAQVYLAMTGGQSTLFSN 179


>gi|255655809|ref|ZP_05401218.1| putative exonuclease [Clostridium difficile QCD-23m63]
 gi|296450953|ref|ZP_06892700.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296879081|ref|ZP_06903077.1| exonuclease superfamily protein [Clostridium difficile NAP07]
 gi|296260171|gb|EFH07019.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296429954|gb|EFH15805.1| exonuclease superfamily protein [Clostridium difficile NAP07]
          Length = 324

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 66/211 (31%), Gaps = 21/211 (9%)

Query: 6   VIYDYETFGRDVALDRP--------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           +  D+E    D   ++P            GV VD ++  I++      KP  + +   + 
Sbjct: 5   LFIDFEFNILDDNKNKPKEYNGTELISIGGVLVDNEFNTIDNYYSL-VKPRYNKILSNKC 63

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T +          +        +++F   +   I YN   FD              +
Sbjct: 64  KNLTKLNQLDINNAPNLLY-VMDDFYKWFCKFDDVTI-YNWGDFDII---------GLLT 112

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
               +       +L ++M  I  F        +    +    L ++     +E    H++
Sbjct: 113 SFRVYKYTGKCLELFNMMIDIQPF-ISQHITYNNRILSKQISLLNMKKIFSVEGDIKHNS 171

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNK 208
            +D    + +        PK  + L +  NK
Sbjct: 172 LSDAMDLMNVCKCFFFNYPKNIDILEELYNK 202


>gi|116666689|pdb|1ZBH|A Chain A, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
 gi|116666690|pdb|1ZBH|B Chain B, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
 gi|116666691|pdb|1ZBH|C Chain C, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
 gi|116666692|pdb|1ZBH|D Chain D, 3'-End Specific Recognition Of Histone Mrna Stem-Loop By
           3'- Exonuclease
          Length = 299

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 80  ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 139

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++     +         + +   +         +    R 
Sbjct: 140 TGITQDQVDRAD-TFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 198

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG  +  L D
Sbjct: 199 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPNCGLDD 248


>gi|289665345|ref|ZP_06486926.1| putative PAS/PAC sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 196

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 22/191 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G D  +        V + + + +       + +   + +    A        
Sbjct: 10  VVVDTETTGVDPFVHDILSVGLVSMAKDYSE-----ELYVQLPSNPIWSTFAE--NNFLK 62

Query: 66  --QKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
              +  ++ +   +  R I +F          I   +N  FD  + + +      +    
Sbjct: 63  FSSQWKKNAMPALDVVRSIERFVEACGNGREVIFVGHNFSFDRMFLQKLTKVAGVEKI-- 120

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                +   D   ++R+    S  G+          +FK  D+     I+    H A AD
Sbjct: 121 -RGVSHRSIDTFTLLRS---LSICGLVPEEAQTSDGAFKYFDI----KIQGDARHTALAD 172

Query: 181 VYATLALVWLI 191
             AT  L   +
Sbjct: 173 ALATKILFKKL 183


>gi|73536576|ref|XP_847712.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438625|emb|CBZ12384.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 502

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 61/240 (25%), Gaps = 21/240 (8%)

Query: 9   DYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           D+E     G         +F  V +D      +      + +P  +         +TGIT
Sbjct: 227 DFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFH-RYVRPLRNPKLTAFCTELTGIT 285

Query: 65  PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDS---- 117
            +              +   +      P   +   +       ++     R F       
Sbjct: 286 QEMVDVAD-PLPTVVAQFQDWLKTEVYPLCWMWARHYGPNRLSHNLKSEQRRFVYDEHTD 344

Query: 118 --YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                +                        +     D     ++  ++  +   +H    
Sbjct: 345 AAKANTSAEAMVCMATDGPWDMRRFMHQCSVLRDGVDFPPVCYRYINVRHSY-SDHFKCR 403

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
            AK     T  L  +    + +    + D RN  ++   +  +    + HVS +  A R 
Sbjct: 404 QAKL----THMLKKMSMSFEGRRHSGIDDTRNIARVLAELFARGYR-VHHVSTITYAHRG 458


>gi|255307423|ref|ZP_05351594.1| putative exonuclease [Clostridium difficile ATCC 43255]
          Length = 342

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/325 (9%), Positives = 83/325 (25%), Gaps = 12/325 (3%)

Query: 17  VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76
           V          V  D + + I+  +    +P  +    P    +T I+ ++         
Sbjct: 21  VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 78

Query: 77  EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136
           E  R+  ++  + +     Y     D     N   R+   +    + N      +    +
Sbjct: 79  EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRDLFVDIKEK 138

Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196
            I            ++          L   N     +AHD   D Y    L   I     
Sbjct: 139 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNVD 189

Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256
                +     +     +    +                N  ++       +     +  
Sbjct: 190 IQNLLIIRDIIRPPFNDINSNLD-NCFNKFKESLYKKEGNYNIVDFSVEIIKTVRMYLLT 248

Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316
            +  +++  + +  +           +++      +++V+ +   +L  +   +   +E 
Sbjct: 249 IIDVNIQNLEIMKDISKKMDTIDKLKDIEEGYFYLLEDVYFDMKDVLEDLMLYRMNEYEY 308

Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341
                         L  +    ++ 
Sbjct: 309 KYEIKNIIKMFDEDLDNEKIYINKC 333


>gi|330960097|gb|EGH60357.1| oligoribonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 178

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D   D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELSTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  AE   +  +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NYFHYR 129


>gi|330946499|gb|EGH47535.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 137

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 2  TNHFVIYDYE-TF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            H+++ D E T    G  VA     +     V++   +++  E  F +PA   L     
Sbjct: 1  MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPLLTHFC 59

Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY 96
            +T I  Q ++           +  ++ S     I+G+
Sbjct: 60 RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARIVGW 97


>gi|325087498|gb|EGC40808.1| oligoribonuclease [Ajellomyces capsulatus H88]
          Length = 189

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 28/131 (21%), Gaps = 21/131 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE---------KIESTEVFFCKPADDYLPDP 55
            V  D E  G +   D+  Q      D              I   E       D  +   
Sbjct: 10  LVWIDCEMTGLNPRTDKILQICCFITDADLNLLEPTGFEAVIHHPESVLDNMDDWCI--- 66

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNI 109
                 G +                +  +  +         T ++  N++  D  +    
Sbjct: 67  ---KTHGQSGLTAAVSASTTTPTAAAEGLLAYIKKHVPRRGTGLLAGNSVHADKEFLACK 123

Query: 110 FYRNFYDSYRW 120
            Y        +
Sbjct: 124 PYSMILKWLHY 134


>gi|29566899|ref|NP_818464.1| gp164 [Mycobacterium phage Omega]
 gi|29425624|gb|AAN12806.1| gp164 [Mycobacterium phage Omega]
          Length = 178

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 59/206 (28%), Gaps = 39/206 (18%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAV 58
           M+   ++ D ET G         + A V V+   ++  +    V   + +     +PEA+
Sbjct: 1   MSRQIIVVDTETGGLGPNAP-VLEIAAVNVETGEEFRVV--PFVTAAQLSSC---EPEAL 54

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I                E  R                N   FD       + R+  D  
Sbjct: 55  AINR------------FYE-RRVFADMLEDAEG-----NKNAFD-------WLRSMLDGN 89

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD------DGATSFKLQDLALANGIEHV 172
            ++  N      L+  +     +    +   S               L  +    G+E+ 
Sbjct: 90  VFAGSNPAFDAPLIAKLLNGEPWHHRKLALESYAAGVLGLPLDELPGLNKVCEILGVENE 149

Query: 173 NAHDAKADVYATLALVWLIREKKPKL 198
           + H A  D  AT     ++R    + 
Sbjct: 150 DPHSALGDARATAECFRILRGMAEQN 175


>gi|330879830|gb|EGH13979.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 143

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 7/120 (5%)

Query: 2   TNHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
             H+++ D E      G  VA     +     V++   +++  E  F +PA   +     
Sbjct: 1   MPHWLVIDLEATTEEGGWPVAEMEVIEIGATLVNQDGRELDHFE-RFVRPARRPVLTHFC 59

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRNFYD 116
             +T I  Q ++           +  ++ S     ++G+ +   +D       +  +  D
Sbjct: 60  RELTHI-NQSSIDSAAPLTTVWPQFERWLSHHRARVLGWASWGDYDRQQLEEEWRYHRLD 118


>gi|313242699|emb|CBY39490.1| unnamed protein product [Oikopleura dioica]
          Length = 481

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 54/216 (25%), Gaps = 36/216 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES----------TEVFFCKPADDYLP 53
             + YD ET G         + A     +++ K E             VF+     D   
Sbjct: 192 TVIYYDTETTG-KARDCSICEIAC--WAQEFNKFECPSVYNPDHRGPNVFYELMFPDRKF 248

Query: 54  DPEAVFITGITPQ---------KALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFD 102
              A  + GI  +         K  +     A+   ++ ++    +    ++ +    +D
Sbjct: 249 SAGASKVNGIKKEGKTGLKVRGKVHKHVQSPAKAMGKMCEWLESFSKKVVLVAHFGTGYD 308

Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
                    R            G S                   +   +     +   ++
Sbjct: 309 HPILIRQMARAGLAERFQKSIFGFSD------------TMIPLKRTMPKQRLKLTVLGEE 356

Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
                 +    AH A  DV+  L +  +        
Sbjct: 357 FIPGWNMYEGKAHTALFDVWCMLMVFRMQNVTFSPY 392


>gi|260588886|ref|ZP_05854799.1| exonuclease family protein [Blautia hansenii DSM 20583]
 gi|260540665|gb|EEX21234.1| exonuclease family protein [Blautia hansenii DSM 20583]
          Length = 320

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/345 (11%), Positives = 96/345 (27%), Gaps = 35/345 (10%)

Query: 4   HFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           +++++D E      G++           +   V++D     ++S +    KP   +    
Sbjct: 2   NYIVFDLEWNQCPYGKEKENKKLPFEIIEIGAVKLDENRNIVDSFQEII-KPVVYHRLHF 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               I GIT  +   +G+      ++   F     T +        D    +       Y
Sbjct: 61  RTKEILGITSNRL-EEGIPFKAAVKK---FLEWCGTDVKFCTWGSADLVELQRNLK---Y 113

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174
               +        +D+  +   IY            ++  T+  L+       ++  +  
Sbjct: 114 YRMLFLLKGPVFYYDVQKLFGLIY------------ENEKTTRSLEYAIDFLKMDKGDTF 161

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           H A  D + T  ++  I E   K    +  Y+N            +  +      F +  
Sbjct: 162 HQALNDAHYTAEILKKIPENFMKRNYSIDCYQNPKN-----KDSEIYTVFKDYSKFISRE 216

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
            ++   A +          +    +     +  ++        +             IK+
Sbjct: 217 FSSKEEAMMDKEVTKTQCFLCKRTAKKKIRWFSVNPKSHLCLAYCPEHGYFKGKAR-IKK 275

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339
               K  ++  +    +          +   +   + R Q   + 
Sbjct: 276 TDEGKYYVVKTLKRIDEAEASEIREKREALRKKRRMKRHQEKKKK 320


>gi|321471838|gb|EFX82810.1| hypothetical protein DAPPUDRAFT_195366 [Daphnia pulex]
          Length = 228

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 52/208 (25%), Gaps = 24/208 (11%)

Query: 3   NHFVIYDYETF-----GRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPE 56
              ++ D+E       G  +      +F  + V+   +E + +    + KP       P 
Sbjct: 35  ERLLVLDFEATCDSQRGT-IRPQEIIEFPVLNVETNGFETVGTFH-RYVKPQVHPTLTPF 92

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TGI             E     H++    +      N                   
Sbjct: 93  CTSLTGIIQDMVEDA-APLKEVMEDFHKWLLSQHLL----NKEFAVVTCGDWDLKELLPR 147

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALANGIEHVNAH 175
            +  +     + +     +     F+     +P       S  KL              H
Sbjct: 148 QFLHTGQVVPAYFKS--WINIKMIFAESTGVYPRNLPHMLSHAKLVH--------FGRLH 197

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLY 203
               D +   A+V  +  +  +     +
Sbjct: 198 SGIDDCHNIAAVVRFLGRRSSQWRLTSF 225


>gi|134105090|pdb|2OA8|A Chain A, Crystal Structure Of Mtrex1 With Ssdna
 gi|134105091|pdb|2OA8|B Chain B, Crystal Structure Of Mtrex1 With Ssdna
          Length = 233

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 33/222 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FFC 45
              +  D E  G   +     +   + V R    +E+T +                    
Sbjct: 9   QTLIFLDLEATGLPSSRPEVTELCLLAVHR--RALENTSISQGHPPPVPRPPRVVDKLSL 66

Query: 46  KPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRF 101
             A      P A  ITG++  +    G    +   +  +  F        C++ +N  R+
Sbjct: 67  CIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRY 126

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D    +    R    S      +G    D +  ++     + +    PS +    S+ L 
Sbjct: 127 DFPLLQTELARLSTPSPL----DGTFCVDSIAALK-----ALEQASSPSGNGSRKSYSLG 177

Query: 162 DLALANGIEH-VNAHDAKADVYATLALVWLIREKKPKLFEYL 202
            +      +   ++H A+ DV   L++     +   +  +  
Sbjct: 178 SIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWVDEH 219


>gi|134104561|pdb|2IOC|B Chain B, The Crystal Structure Of Trex1 Explains The 3' Nucleotide
           Specificity And Reveals A Polyproline Ii Helix For
           Protein Partenring
 gi|134104562|pdb|2IOC|A Chain A, The Crystal Structure Of Trex1 Explains The 3' Nucleotide
           Specificity And Reveals A Polyproline Ii Helix For
           Protein Partenring
          Length = 242

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 33/222 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FFC 45
              +  D E  G   +     +   + V R    +E+T +                    
Sbjct: 12  QTLIFLDLEATGLPSSRPEVTELCLLAVHR--RALENTSISQGHPPPVPRPPRVVDKLSL 69

Query: 46  KPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRF 101
             A      P A  ITG++  +    G    +   +  +  F        C++ +N  R+
Sbjct: 70  CIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRY 129

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
           D    +    R    S      +G    D +  ++     + +    PS +    S+ L 
Sbjct: 130 DFPLLQTELARLSTPSPL----DGTFCVDSIAALK-----ALEQASSPSGNGSRKSYSLG 180

Query: 162 DLALANGIEH-VNAHDAKADVYATLALVWLIREKKPKLFEYL 202
            +      +   ++H A+ DV   L++     +   +  +  
Sbjct: 181 SIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWVDEH 222


>gi|293365308|ref|ZP_06612025.1| exonuclease [Streptococcus oralis ATCC 35037]
 gi|307703848|ref|ZP_07640789.1| DNA polymerase III, epsilon chain [Streptococcus oralis ATCC 35037]
 gi|291316758|gb|EFE57194.1| exonuclease [Streptococcus oralis ATCC 35037]
 gi|307622683|gb|EFO01679.1| DNA polymerase III, epsilon chain [Streptococcus oralis ATCC 35037]
          Length = 197

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 59/192 (30%), Gaps = 28/192 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ +D E F +   L    Q + VR  +  ++  + + +                +TGIT
Sbjct: 7   YIAFDLE-FNQHDGLTHLIQVSAVRF-QDGKESAAFDSY---VHTTVPLKSFINGLTGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       VE +  +    F       I+GYN  + D                      
Sbjct: 62  AETLKDAPKVE-QVLKDFQAFVGDLP--IVGYNAAKSDLPILLEHGIDY----------R 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              + DL D      +    GI          + KLQ +A   G  H  +H++  D   T
Sbjct: 109 DQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVANFLGF-HGKSHNSLEDARMT 158

Query: 185 LALVWLIREKKP 196
             +     E   
Sbjct: 159 ARVYEAFLESDE 170


>gi|229168274|ref|ZP_04295999.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH621]
 gi|228615100|gb|EEK72200.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH621]
          Length = 273

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 54/235 (22%), Gaps = 22/235 (9%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V++D    + I                      +TGIT +     G    +  
Sbjct: 18  EIVDIGAVKIDVSTMKVIGEFSEL---VKPSAPLTRHTTKLTGITKKDLTGVG-NFPQII 73

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
            +  QF    ++  + +    +         Y               SR+D+   +   Y
Sbjct: 74  EKFIQFIGE-DSIFVSWGKEDYRFLSQDCTLYGVECPCMEKE-----SRFDVQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
               +    PS         L              H A AD   T  +   +  +   + 
Sbjct: 128 EELFE--HTPSLQFAVDQLGLT--------WEGKQHRALADAENTANIFLKVYGE-RDIN 176

Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254
           +    +     ++     +     +         ++        A+        I
Sbjct: 177 KRYKRHGELELVKNGKLTEKAKKRMRKWVFKELRKNTERPFVWSAFESSDTWESI 231


>gi|89894542|ref|YP_518029.1| sporulation inhibitor KapD [Desulfitobacterium hafniense Y51]
 gi|89333990|dbj|BAE83585.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 222

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 5   FVIYDYETF-----GRD-VALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEA 57
           F++ D+E       G+         +     +D   +  ++ T   F KP        E+
Sbjct: 16  FLVVDFEFSVPQSYGKPRAWFPEIIEVGATVLDSNGKLALDKTFNAFVKPRFWPRLAEES 75

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             ITGI  +     G++  E  + + Q  + P   ++ + +       +    Y   Y  
Sbjct: 76  YGITGIRQEDV-DQGILLEEAIQHL-QKLAHPEAYVVAWGDADRKILGNVCEKYGLKYPF 133

Query: 118 YRWSWDN 124
              ++ +
Sbjct: 134 VWENYID 140


>gi|193076779|gb|ABO11496.2| ribonuclease T [Acinetobacter baumannii ATCC 17978]
          Length = 220

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 58/211 (27%), Gaps = 31/211 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +  + Q +            P +    D  ++   G
Sbjct: 24  VVVDVETAGFNAQTDALLEIACIPIVYNAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83

Query: 63  ITP------QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P        A  +        + +++          ++  +N  FD  + +    R+ 
Sbjct: 84  IDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQAAIARSG 143

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172
                    N    + ++D +          +             L    +  GIE    
Sbjct: 144 -----TKNQNPFHSFSVMDTVTLSAVMFGQTV-------------LAKACIQAGIEFDGK 185

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLY 203
            AH A  D   T  L   I  K         
Sbjct: 186 EAHSALYDTQKTAELFCYILNKLSPYLLDSL 216


>gi|148992870|ref|ZP_01822489.1| exonuclease [Streptococcus pneumoniae SP9-BS68]
 gi|168490187|ref|ZP_02714386.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP195]
 gi|147928322|gb|EDK79338.1| exonuclease [Streptococcus pneumoniae SP9-BS68]
 gi|183571454|gb|EDT91982.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP195]
 gi|332073326|gb|EGI83805.1| exonuclease family protein [Streptococcus pneumoniae GA17570]
          Length = 196

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R   +I++ + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQASAVRF-RDGREIDAYDSY---VHTSVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +       VE +      +F    +  +IGYN  + D                  
Sbjct: 58  TGITAETLKDAPPVE-KVLEEFQEFV--GSLLMIGYNAAKSDLPILAEHGLDY------- 107

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              +   + DL D      +    GI          + KLQ +A   G +   +H++  D
Sbjct: 108 ---SQQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVASFLGFQ-GQSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYESFLESDQ 170


>gi|91794560|ref|YP_564211.1| oligoribonuclease [Shewanella denitrificans OS217]
 gi|123165774|sp|Q12J88|ORN_SHEDO RecName: Full=Oligoribonuclease
 gi|91716562|gb|ABE56488.1| Exonuclease [Shewanella denitrificans OS217]
          Length = 181

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           N+ +  D E  G +  +D   + A +  D +   +    V     +D+ L   D      
Sbjct: 6   NNLIWIDLEMTGLEPEVDVVIEIATLVTDSELNILAQGPVIAIHQSDETLAKMDDWNQKH 65

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    +       EA+   +  +F +         +  N+I  D  +          
Sbjct: 66  HGQSGLIDRVKASQFTEADAIEQTIKFLAQYVPKGASPMCGNSIGQDRRFLNKYMLELEE 125

Query: 116 DSYRW 120
             +  
Sbjct: 126 YFHYR 130


>gi|332244613|ref|XP_003271468.1| PREDICTED: 3'-5' exoribonuclease 1 [Nomascus leucogenys]
          Length = 349

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++  +  +         + +   +         +    R 
Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQLSRL 248

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRLHCGLDD 298


>gi|111221205|ref|YP_711999.1| oligoribonuclease [Frankia alni ACN14a]
 gi|111148737|emb|CAJ60413.1| Oligoribonuclease [Frankia alni ACN14a]
          Length = 256

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           +  V  D E  G D A D   + A +  D +   ++ 
Sbjct: 15 MDRLVWIDCEMTGLDAASDLLLEVACLVTDSELNILDE 52


>gi|86739751|ref|YP_480151.1| oligoribonuclease [Frankia sp. CcI3]
 gi|86566613|gb|ABD10422.1| Exonuclease [Frankia sp. CcI3]
          Length = 250

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           +  V  D E  G D A D   + A +  D +   ++ 
Sbjct: 13 MDRLVWIDCEMTGLDAASDLLLEVACLVTDSELNILDE 50


>gi|261334507|emb|CBH17501.1| phosphotransferase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 540

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 49/198 (24%), Gaps = 15/198 (7%)

Query: 3   NHFVIYDYETFGRDVALDR------PAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDP 55
           + +++ D+E         +        +F  V VD R    I   +  + +P  +     
Sbjct: 32  DTYMVLDFEAT---CERHQRLEVPEVIEFPIVLVDARNGNTISEFQQ-YVRPVVNPQLSE 87

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +TGIT Q  +       +       +    N      N                  
Sbjct: 88  FCTELTGIT-QSVVDRASTFPDVFTAAMNYLHQNNCGETEINKRYLPVTCGDWDLKTMLP 146

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS---FKLQDLALANGIEHV 172
              +     G +      + R                    S     L D+    G+E  
Sbjct: 147 IQVKACIQQGFTVNVPPSLRRWFNIKQYMQRVLSPGLGQTVSQPIHDLPDMMSVLGLEMK 206

Query: 173 NAHDAKADVYATLALVWL 190
             H +  D    +A V  
Sbjct: 207 GRHHSGIDDCRNIAAVLC 224


>gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
          Length = 306

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 54/185 (29%), Gaps = 29/185 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+ET   +   + P       V +    +E           +    P  + I GI
Sbjct: 2   NFTAIDFET--ANERRNSPCSIGIAVV-KNGHVVEKIHHLIR--PKEMRFMPINIGIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P     +     +   +I  +F   +  ++  +N  FD    R        D  ++ + 
Sbjct: 57  RPAVVENEPE-FDKVWEKIKHYF---DGNLVIAHNASFDISVLRKTAELYDIDLPKFKY- 111

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   +  M+    F                 KL  +    G E    HDA  D  A
Sbjct: 112 --------ICTMKLSKNFYRGIEN----------AKLNTVNDFLGYEF-KHHDALYDALA 152

Query: 184 TLALV 188
              ++
Sbjct: 153 CSNIL 157


>gi|123442082|ref|YP_001006065.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089043|emb|CAL11861.1| putative exodeoxyribonuclease [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 220

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 52/190 (27%), Gaps = 38/190 (20%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F + D ET+G         + A + V      + +       P  D     +A+ I  IT
Sbjct: 3   FRVIDTETYGL---EGGIVEIASIDVMDGA--LSNPMSDLVSP--DRPISLDAMVIHHIT 55

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +            +  + ++    +   + +N              R         W  
Sbjct: 56  EEMVEGKPR----IAVAVRKY--QGSPYYVAHNAPFD----------RGVLPEMGGQW-- 97

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                  L + R +Y         P         +       +  +++  H A  D Y T
Sbjct: 98  ----ICTLKLARMLY---------PDIKHSNQYLRYALRLNVSVPDNLYPHRALYDCYVT 144

Query: 185 LALVWLIREK 194
            AL+  I   
Sbjct: 145 AALLQRIMRD 154


>gi|319946218|ref|ZP_08020458.1| exonuclease [Streptococcus australis ATCC 700641]
 gi|319747600|gb|EFV99853.1| exonuclease [Streptococcus australis ATCC 700641]
          Length = 197

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 64/200 (32%), Gaps = 34/200 (17%)

Query: 1   MTN--HFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           M    H+V +D E    +    +    Q + VR     +++   + +      D      
Sbjct: 1   MKELSHYVSFDLE---FNQFEGKYHIIQVSAVRF-ADGQEVAHYDSYAYT---DKPLKSF 53

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TGIT  K L+   +E +       F +     +IGYN I+ D              
Sbjct: 54  INGLTGITSDKILQAPPLE-QVLAEFRDFVAESP--LIGYNAIKSDLPILTENG------ 104

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              ++               A+  F     + PS   G  + +L  +A   G+    +HD
Sbjct: 105 -LEFTNQ------------YAVDVFEEASKRRPSDLHGIKNLQLHTVAQFLGVA-GKSHD 150

Query: 177 AKADVYATLALVWLIREKKP 196
           +  D   T  +     E   
Sbjct: 151 SLEDARMTALVYEAFLESDR 170


>gi|194221352|ref|XP_001916137.1| PREDICTED: similar to Three prime repair exonuclease 1 (3-5
           exonuclease TREX1) (DNase III) [Equus caballus]
          Length = 362

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 61/207 (29%), Gaps = 29/207 (14%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDR---------------QWEKIESTEVFFCKP 47
              +  D E  G   +  +  +   + V R                       +      
Sbjct: 60  QTLIFLDLEATGLPFSQPKVTELCLLAVHRCALESSPNPHGPPPTVPPPPRVVDKLSLCV 119

Query: 48  ADDYLPDPEAVFITGITPQKALRDG--VVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDD 103
           A      P A  ITG++       G    +A+    +  F        C++ +N  R+D 
Sbjct: 120 APGKACSPAASDITGLSTGMLTAHGRQRFDADLVNLLRAFLQRQPKPWCLVAHNGDRYDF 179

Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              +             S  +G    D +  ++     + +    PS      S+ L  +
Sbjct: 180 PLLQAELAVLGL----TSALDGAFCVDSIAALK-----ALEQAGSPSEHGPRKSYSLGSI 230

Query: 164 -ALANGIEHVNAHDAKADVYATLALVW 189
                G    ++H A+ DV A L++  
Sbjct: 231 YTRLYGKAPPDSHTAEGDVLALLSICQ 257


>gi|195331405|ref|XP_002032393.1| GM23540 [Drosophila sechellia]
 gi|194121336|gb|EDW43379.1| GM23540 [Drosophila sechellia]
          Length = 184

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           V  D E  G D+  D+  + A +  D+       
Sbjct: 11 IVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSE 45


>gi|116666695|pdb|1ZBU|A Chain A, Crystal Structure Of Full-Length 3'-Exonuclease
 gi|116666696|pdb|1ZBU|B Chain B, Crystal Structure Of Full-Length 3'-Exonuclease
 gi|116666697|pdb|1ZBU|C Chain C, Crystal Structure Of Full-Length 3'-Exonuclease
 gi|116666698|pdb|1ZBU|D Chain D, Crystal Structure Of Full-Length 3'-Exonuclease
          Length = 349

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQF--FSVPNT-----CIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++          T      +   +         +    R 
Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDLXKLKELGTKYKYSLLTDGSWDXSKFLNIQCQLSRL 248

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIXLEKLGXDYDGRPHCGLDD 298


>gi|55959491|emb|CAI12491.1| prion protein interacting protein [Homo sapiens]
 gi|56203066|emb|CAI23194.1| prion protein interacting protein [Homo sapiens]
          Length = 222

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 48/175 (27%), Gaps = 13/175 (7%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
              +F  ++++ +  +IEST   + +P       P    +TGI             +   
Sbjct: 49  EIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVLE 107

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
           R+ ++ +                  +    +    D        G  ++  L V      
Sbjct: 108 RVDEWMAKEG-----------LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQ 156

Query: 141 FSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVYATLALVWLIREK 194
           +      +           L D+     ++H    H    D      ++  +  +
Sbjct: 157 WINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYR 211


>gi|73536580|ref|XP_847714.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438628|emb|CBZ12387.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 405

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 17/189 (8%)

Query: 5   FVIYDYETFGRDVAL---DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
            ++ D E               +  GV ++ +  +++    F         P   P    
Sbjct: 76  IIVVDVEATCEQNNRNYPHEVIEIPGVLINVRTGQVDRARSFHTFVKPWRNPRLTPFCTQ 135

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT Q+ +       E  +   ++     T   G   I   D       + + +   R
Sbjct: 136 LTGIT-QEVVDAAPSITEAIQLFEKW--YWETIPRGAKTIFAADGPWDFKNFIHEHHILR 192

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                 +  ++ LD+          G+                L   N       H+   
Sbjct: 193 DHVGFPSIFYEYLDIRTTFAHRLNHGVPIKLDAM---------LRKMNLRFDGRPHNGFD 243

Query: 180 DVYATLALV 188
           D Y    L 
Sbjct: 244 DAYNIARLA 252


>gi|331002523|ref|ZP_08326041.1| hypothetical protein HMPREF0491_00903 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410339|gb|EGG89773.1| hypothetical protein HMPREF0491_00903 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 331

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 71/242 (29%), Gaps = 30/242 (12%)

Query: 2   TNHFVIYDYETF----GRDV-ALD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
            + +++ D E      GR+    D      +   ++++ + E ++       KP      
Sbjct: 1   MDSYIVLDLEWNQSPNGREYSNKDLPFEIIEIGALKLNSRLETVDEFH-RVIKPTVYKKM 59

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNI 109
             +   +  I   +  + GV   E  R   +F  + N      +  + N+          
Sbjct: 60  HFKVHEVVQIGIGELKKKGVPFVEAIRDFFEFCELDNPEKKKILCTWGNLDLV------E 113

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
             RN    Y          +         Y            +       L+      GI
Sbjct: 114 LQRN-MKFYGVENKFDYPLF---------YYDIQKLFNIRYPNGEQDRIPLERAVNMLGI 163

Query: 170 EHVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
           E     H A  D + T+ ++  +  +  K +  L  YR      + I +        VS 
Sbjct: 164 ETRRPFHHAFDDAFYTVKVLQNMDFEPVKEYYSLDYYRVPRNSEEEIYLHFSGYSKFVST 223

Query: 229 MF 230
           +F
Sbjct: 224 LF 225


>gi|290984185|ref|XP_002674808.1| predicted protein [Naegleria gruberi]
 gi|284088400|gb|EFC42064.1| predicted protein [Naegleria gruberi]
          Length = 304

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 61/211 (28%), Gaps = 24/211 (11%)

Query: 6   VIYDYETFGRD---VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +I D+ET                +           +    F            +A  +TG
Sbjct: 91  LILDFETTDLQTRAPTDCYIYNIS----------KDRFLSFPKYILPRVKILRDAEKLTG 140

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +     G  E E  + I  F   P   +I  +N  FD               + +  
Sbjct: 141 ITNELVQN-GTKEMEAVKLIVDFL--PKKSLILAHNAPFDKSVLHRA--------FNYWR 189

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N +   D L     I+  +   ++   + +                   N H A ADV 
Sbjct: 190 MNNSKTIDGLKNSHIIFLDTIPILKKALKLEKNQCKLGNIYQQLFRKSIENQHTAAADVI 249

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
           A   ++  +  K+  +      ++    L+K
Sbjct: 250 ALKEILEHVFGKESVIRNVKNHFKLIKDLKK 280


>gi|319941454|ref|ZP_08015782.1| exonuclease RNase T and DNA polymerase III [Sutterella
          wadsworthensis 3_1_45B]
 gi|319805074|gb|EFW01904.1| exonuclease RNase T and DNA polymerase III [Sutterella
          wadsworthensis 3_1_45B]
          Length = 194

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 15/37 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          ++ +  D E  G    ++R  + A +  D+    +  
Sbjct: 19 DNLIWIDMEMTGLQPEVNRVLEVAAIITDKNLNILHE 55


>gi|229061116|ref|ZP_04198467.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH603]
 gi|228718199|gb|EEL69837.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH603]
          Length = 273

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 54/235 (22%), Gaps = 22/235 (9%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V++D    + I                      +TGIT +  +  G    +  
Sbjct: 18  EIVDIGAVKIDVSTMKVIGEFSEL---VKPSAPLTRHTTKLTGITKKDLIGVG-NFPQII 73

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
            +  QF    ++  + +    +         Y               SR+D+   +   Y
Sbjct: 74  EKFIQFIGE-DSIFVSWGKEDYRFLSQDCTLYGVECPCMEKE-----SRFDVQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
               +    PS         L              H A AD   T  +      +   + 
Sbjct: 128 EELFE--HTPSLQFAVDQLGLT--------WEGKQHRALADAENTANIFLKAYSE-RDIN 176

Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254
           +    +     ++     +     +         +S        A+        I
Sbjct: 177 KRYKRHGELELVKNGKLTEKAKKKMRKWAFKEMKKSAERPFVWSAFESSDTWESI 231


>gi|328949709|ref|YP_004367044.1| ATP-dependent DNA helicase, RecQ family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450033|gb|AEB10934.1| ATP-dependent DNA helicase, RecQ family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 1673

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 55/193 (28%), Gaps = 23/193 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              +V  D E  G D    +  Q   V         E+        +D            
Sbjct: 1   MKPYVFIDLEATGTDPNQAQILQI--VAYKEGAAPFEAFVDTPEPVSDTDEIWGFV---- 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G + +K  R      E  + + ++    +  + G+N + +D                   
Sbjct: 55  GFSREKYDRHKRPLEEVLKELLEYV--GDQPLAGHNILFYDIPLLERWLRACGLALPPTP 112

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKAD 180
                     LD +R  +   P        D+    + L DL A   G   V AHDA  D
Sbjct: 113 ---------ALDTLRLAHLIFPT-----PPDERLRGYGLGDLYAYFFGRPLVGAHDALLD 158

Query: 181 VYATLALVWLIRE 193
           V A   +   +  
Sbjct: 159 VAANREVARELYR 171


>gi|198284062|ref|YP_002220383.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665313|ref|YP_002426714.1| oligoribonuclease Orn [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248583|gb|ACH84176.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517526|gb|ACK78112.1| oligoribonuclease Orn [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 194

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 7/124 (5%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62
            +  D E  G     D+  + A +  D     +    V      +  L   D        
Sbjct: 8   LIWIDLEMTGLHPGQDQILEIATLVTDDSLRILCEGPVLAVHQPEFVLAALDDWNQRTHS 67

Query: 63  ITP--QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            +   Q+     +  A    +   F        T  +  N++  D  +   +  R     
Sbjct: 68  TSGLLQRVRDSRLDMAAAETQTLDFLHQHVTTGTSPMCGNSVCQDRRFLARLMPRLERFF 127

Query: 118 YRWS 121
           +   
Sbjct: 128 HYRM 131


>gi|15617165|ref|NP_240378.1| oligoribonuclease [Buchnera aphidicola str. APS (Acyrthosiphon
          pisum)]
 gi|11133762|sp|P57637|ORN_BUCAI RecName: Full=Oligoribonuclease
 gi|25338349|pir||H84996 oligoribonuclease [imported] - Buchnera sp. (strain APS)
 gi|10039230|dbj|BAB13264.1| oligoribonuclease [Buchnera aphidicola str. APS (Acyrthosiphon
          pisum)]
          Length = 184

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
            + +  D E  G +  + R  + A +  D     I  
Sbjct: 5  KKNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAE 42


>gi|317026983|ref|XP_003188586.1| RNA exonuclease Rex2 [Aspergillus niger CBS 513.88]
          Length = 188

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 13/37 (35%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
          ++  V  D E  G D   D+  Q      D     +E
Sbjct: 7  SDPLVWIDCEMTGLDADTDQILQICCFITDANLNLLE 43


>gi|227015888|gb|ACP17985.1| putative exonuclease RNase T and DNA polymerase III [Pseudomonas
           nitroreducens]
          Length = 182

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 30/202 (14%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFI 60
              FV  D E  G                       ++ + F C          P A+ +
Sbjct: 5   KEIFVSVDIEASGPIPGKYSMLSIGACVTS------DTAQRFTCYLKPISDEFVPAAMEV 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSV-----PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           TG++  K   +G+   +  ++   +         +   +G+N            F   ++
Sbjct: 59  TGLSLNKLREEGLSPIKAMKQFKVWVDSLAGEGASVIFVGFNASFD------WAFVNYYF 112

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
             +      G +  D+              + +        S +  D+           H
Sbjct: 113 HEFIGENPFGIAALDI------------KSMYFGVAGSTWKSTRSSDIDKVLNPSSKGDH 160

Query: 176 DAKADVYATLALVWLIREKKPK 197
           DA  D      L  LIR+K  +
Sbjct: 161 DALHDAVYQAELFNLIRQKLMR 182


>gi|146092927|ref|XP_001466575.1| hypothetical protein [Leishmania infantum]
 gi|134070938|emb|CAM69614.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 502

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 21/239 (8%)

Query: 9   DYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           D+E     G         +F  V +D      +      + +P  +         +TGIT
Sbjct: 227 DFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFH-RYVRPLRNPKLTAFCTELTGIT 285

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPN----TCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            +              +   +              +       +  ++   R  YD +  
Sbjct: 286 QEMVDVAD-PLPTVVAQFQDWLKTEVYPLCRMWARHYGPNRLSHNLKSEQRRFVYDEHTD 344

Query: 121 SWDNGNSRWDLLDVM----RAIYAFSPDGIQWPSRDDGATS-FKLQDLALANGIEHVNAH 175
           +     S   ++ +       +  F  +        D     ++  ++  +   +H    
Sbjct: 345 AAKANTSAEAMICMATDGPWDMRRFMHECSVLRDGVDFPPVCYRYINVRHSY-SDHFKCR 403

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
            AK     T  L  +    + +    + D RN  ++   +  +    + HVS +  A R
Sbjct: 404 QAKL----THMLKKMSMSFEGRRHSGIDDTRNIARVLAELFARGYR-VHHVSTIKYAHR 457


>gi|327479762|gb|AEA83072.1| ribonuclease T [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 66/218 (30%), Gaps = 37/218 (16%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPAD--DY 51
           M   F     V+ D E  G + A D   + A V V  D Q   +   +  F +       
Sbjct: 22  MARRFRGFLPVVIDVECGGFNCATDALLEIAAVTVGMDEQG-LLYPQDTLFYRVEPFAGA 80

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYY 105
             +P A+  TGI     LR  V E +    I +              I+  +N  FD  +
Sbjct: 81  NIEPAALEFTGIKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGF 140

Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
                 R       +      S +D   +    Y  +                 L     
Sbjct: 141 LNAAIARCEIKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQ 181

Query: 166 ANGIEHV--NAHDAKADVYATLALVWLIREKKPKLFEY 201
           A GI+     AH A+ D   T  L   I  +  ++  +
Sbjct: 182 AAGIDFDGREAHSARYDTEKTAELFCGIVNRWKEMGGW 219


>gi|291393623|ref|XP_002713390.1| PREDICTED: three prime repair exonuclease 1-like [Oryctolagus
           cuniculus]
          Length = 322

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 57/211 (27%), Gaps = 35/211 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDR---------QW---------EKIESTEVF 43
               +  D E  G   +  +  +   + V R         +            ++     
Sbjct: 19  MQALIFLDLEATGLPFSQPKITELCLLAVHRCALESAPPSEGPPAAVPQPPRVVDKLS-- 76

Query: 44  FCKPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNI 99
            C  A      P A  ITG++       G    +      +  F        C++ +N  
Sbjct: 77  LC-VAPGKACSPAASKITGLSTAALAAHGRQRFDDNLVTLLLAFLQRQPVPWCLVAHNGD 135

Query: 100 RFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
           R+D    +         +   S            V       + +    PS      S+ 
Sbjct: 136 RYDFPLLQAELATLGLSNALDS---------AFCVDSMAALKALEQSSSPSEHSPRKSYS 186

Query: 160 LQDL-ALANGIEHVNAHDAKADVYATLALVW 189
           L  +     G     +H A+ DV A L++  
Sbjct: 187 LGSIYTRLYGQAPPESHTAEGDVLALLSVCQ 217


>gi|288959282|ref|YP_003449623.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
 gi|288911590|dbj|BAI73079.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
          Length = 209

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 46/183 (25%), Gaps = 29/183 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET   +           V          + E    +P +          I GI  
Sbjct: 9   VAIDFET--ANETRTSACSIG-VAWIEDGRVTAT-EEHLIRPREPRFNS-FNSAIHGIRA 63

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          E    + +        +I  +N  FD    R+       D         
Sbjct: 64  EDVADAPE-FPEVWATLRERVR---GRLILAHNAAFDISVLRHTLTDYGLDWPA------ 113

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
               D L  +            WP+        +L  LA   GI   + H   +D  A  
Sbjct: 114 ---CDYLCTVMLAR------RAWPALTG----HRLNHLADFLGIALDHHHAG-SDAEACG 159

Query: 186 ALV 188
            + 
Sbjct: 160 RIA 162


>gi|330503165|ref|YP_004380034.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           NK-01]
 gi|328917451|gb|AEB58282.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina
           NK-01]
          Length = 182

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 46/188 (24%), Gaps = 23/188 (12%)

Query: 6   VIYDYETF---GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           ++ D E     G     +    +     V     + +  +    KP            +T
Sbjct: 5   LVIDLEATTDEGGWPMEEMEIIEIGASLVGVDGHERDHFQ-RIVKPQRRPCLTDFCRELT 63

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            IT            +   +  ++ +     ++G+++                +  Y   
Sbjct: 64  HITQSDVDSA-APMPQVWAQFERWLTQHAPRLVGWSS----------------WGDYDRR 106

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKAD 180
                 R   L+ + +          +           L       G++     H A  D
Sbjct: 107 QLEQEWRQHHLNSLLSEVPHLNLKQAFAKARQLQRPIGLHSALQLAGMQFQGQQHRALED 166

Query: 181 VYATLALV 188
              T  L+
Sbjct: 167 ARNTARLL 174


>gi|322505025|emb|CAM42259.2| putative phosphotransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 575

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 11/208 (5%)

Query: 3   NHFVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
           + +++ D E     GR +      +F  V VD R   ++   +  + +P  + +      
Sbjct: 50  DAYIVLDLEATCEAGRRITDAEVIEFPMVLVDPRTATQVAEFQ-RYVRPVKNPMLSRFCT 108

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT                   QF +         +      Y        +     
Sbjct: 109 ELTGITQNMVSHRD-PFPVVYCEALQFLAEAGL----GDAPPLRSYCVVTCGDWDLKTML 163

Query: 119 RWSWDNGNSRWDLLDVMRAIY-AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                    +   L   R         G+      +      + D+    G+ H   H +
Sbjct: 164 PSQIRISGQQGTPLSFQRWCNLKKYMSGLGLRDGGERGGPTDMPDMLRILGLPHQGRHHS 223

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDY 205
             D    +A V     K+  + +  +  
Sbjct: 224 GIDDCRNIAAVLCALLKRGLVVDTTFAT 251


>gi|226952584|ref|ZP_03823048.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse
           activity) [Acinetobacter sp. ATCC 27244]
 gi|294649880|ref|ZP_06727280.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194]
 gi|226836664|gb|EEH69047.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse
           activity) [Acinetobacter sp. ATCC 27244]
 gi|292824254|gb|EFF83057.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194]
          Length = 220

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 57/213 (26%), Gaps = 31/213 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAG--VRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A   +  D   +     +      P +    D  ++   G
Sbjct: 24  VVVDVETAGFNCQTDALLEIACIPIVYDEHGQFVPGPSFQAHINPFEGANLDRRSLDFIG 83

Query: 63  ITP------QKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           I P        A  +        + +++          ++  +N  FD  + +    R+ 
Sbjct: 84  IDPFNPMRVAMAEDERSALRRIFKSLNEIRKAQHCTHAVLVGHNAHFDLGFLQAAIARSG 143

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-- 172
                    N    + + D +          +             L    +  GIE    
Sbjct: 144 -----TKNQNPFHSFSVFDTVTLSAVMFGQTV-------------LARACIQAGIEFDGK 185

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205
            AH A  D   T  L   I  K           
Sbjct: 186 EAHSALYDTQKTAELFCYILNKLSPHLLDSLVT 218


>gi|322390290|ref|ZP_08063819.1| exonuclease [Streptococcus parasanguinis ATCC 903]
 gi|321143021|gb|EFX38470.1| exonuclease [Streptococcus parasanguinis ATCC 903]
          Length = 197

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 59/196 (30%), Gaps = 32/196 (16%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +      +  Q + V      ++++  + +      D         +
Sbjct: 5   EDYIAFDLE---FNQYEGAYQIIQVSAVHFTH-GKEVDHYDSY---VYTDKPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT  K      +E +       F    +  +IGYN  + D          +  D Y  
Sbjct: 58  TGITQDKIQNAPQLE-QVLSEFKAFV--GDRPLIGYNAKKSDLPILL-ENGLDLEDQYA- 112

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D+ D               PS   G  + +L  +A   G+    +HD+  D
Sbjct: 113 --------VDVFDEAFERR---------PSDLHGIKNLQLHTVAEFLGVA-GKSHDSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTALVYEQFLEFDQ 170


>gi|68466641|ref|XP_722516.1| hypothetical protein CaO19.1466 [Candida albicans SC5314]
 gi|68466924|ref|XP_722377.1| hypothetical protein CaO19.9041 [Candida albicans SC5314]
 gi|46444347|gb|EAL03622.1| hypothetical protein CaO19.9041 [Candida albicans SC5314]
 gi|46444495|gb|EAL03769.1| hypothetical protein CaO19.1466 [Candida albicans SC5314]
          Length = 255

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 17/133 (12%)

Query: 2   TNHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIES---------TEVFFCKPADDY 51
               V  D E  G DV  D    +   +  +   + ++           +    K  +  
Sbjct: 44  KKPLVWVDCEMTGLDVFGDDNIIEICCIITNEDLDIVDENGYESTIYYPKSRLDKMNEWC 103

Query: 52  LPDPEAVFITGITPQKALRDG----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
           +         G+T +          VVE E    I ++     T ++  N++  D ++  
Sbjct: 104 IETHGKS---GLTDKILANPDRKLSVVEDELLEYIKKYVPEVRTGLLAGNSVYMDRFFMM 160

Query: 108 NIFYRNFYDSYRW 120
             F +     +  
Sbjct: 161 KEFPKVIDHLHYR 173


>gi|219681916|ref|YP_002468302.1| oligoribonuclease [Buchnera aphidicola str. 5A (Acyrthosiphon
          pisum)]
 gi|219682471|ref|YP_002468855.1| oligoribonuclease [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
          pisum)]
 gi|257471622|ref|ZP_05635621.1| oligoribonuclease [Buchnera aphidicola str. LSR1 (Acyrthosiphon
          pisum)]
 gi|219622204|gb|ACL30360.1| oligoribonuclease [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
          pisum)]
 gi|219624759|gb|ACL30914.1| oligoribonuclease [Buchnera aphidicola str. 5A (Acyrthosiphon
          pisum)]
 gi|311086294|gb|ADP66376.1| oligoribonuclease [Buchnera aphidicola str. LL01 (Acyrthosiphon
          pisum)]
 gi|311087458|gb|ADP67538.1| oligoribonuclease [Buchnera aphidicola str. JF99 (Acyrthosiphon
          pisum)]
          Length = 184

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
            + +  D E  G +  + R  + A +  D     I  
Sbjct: 5  KKNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAE 42


>gi|322488733|emb|CBZ23980.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 502

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 60/240 (25%), Gaps = 21/240 (8%)

Query: 9   DYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           D+E     G         +F  V +D      +      + +P  +         +TGIT
Sbjct: 227 DFEATCASGSVHYPHEIIEFPVVVLDTATLRIVAEFH-RYVRPLRNPKLTAFCTELTGIT 285

Query: 65  PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDS---- 117
            +              +   +      P   +   +       ++     R F       
Sbjct: 286 QEMVDVAD-PLPTVVAQFQDWLKTEVYPLCRMWARHYGPNRLSHNLKSEQRRFVYDEHTD 344

Query: 118 --YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                +                        +           ++  ++  +   +H    
Sbjct: 345 AAKANTSAEAMVCMATDGPWDMRRFMHECSVLRDGVAFPPVCYRYINVRHSY-SDHFKCR 403

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
            AK     T  L  +    + +    + D RN  ++   +  +    + HVS +  A R 
Sbjct: 404 QAKL----THMLKKMSMSFEGRRHSGIDDTRNIARVLAELFARGYR-VHHVSTIKYAHRG 458


>gi|296283564|ref|ZP_06861562.1| exonuclease, RNase T and DNA polymerase III [Citromicrobium
           bathyomarinum JL354]
          Length = 180

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 57/195 (29%), Gaps = 28/195 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D ET G               VDR     +       KP  D   DP+A+ ++G++
Sbjct: 8   FISVDVETSGPIPGEFSLLSIGACAVDR----PDQHFECLLKPITDRA-DPKALEVSGLS 62

Query: 65  PQKALRDGVVEAEFSRRIHQFF-----SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            +     G+   +   R   +             +G+N   FD  +    F+R       
Sbjct: 63  LEILQHTGLEPVQAMERFEIWVGQMAGETGTPIFVGFNAP-FDWSFVNYYFHRFL----- 116

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                G +  D+       Y     G  W +            +    G      HD   
Sbjct: 117 RRNPFGFTALDI-----KAYYMGSAGTSWEATRSSK-------MRKQLGAALEGDHDPLN 164

Query: 180 DVYATLALVWLIREK 194
           D  A   L  L R K
Sbjct: 165 DALAQAELFRLARTK 179


>gi|254975986|ref|ZP_05272458.1| putative exonuclease [Clostridium difficile QCD-66c26]
 gi|255093374|ref|ZP_05322852.1| putative exonuclease [Clostridium difficile CIP 107932]
 gi|255315119|ref|ZP_05356702.1| putative exonuclease [Clostridium difficile QCD-76w55]
 gi|255517789|ref|ZP_05385465.1| putative exonuclease [Clostridium difficile QCD-97b34]
 gi|255650904|ref|ZP_05397806.1| putative exonuclease [Clostridium difficile QCD-37x79]
          Length = 342

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/325 (9%), Positives = 83/325 (25%), Gaps = 12/325 (3%)

Query: 17  VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76
           V          V  D + + I+  +    +P  +    P    +T I+ ++         
Sbjct: 21  VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 78

Query: 77  EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136
           E  R+  ++  + +     Y     D     N   R+   +    + N      +    +
Sbjct: 79  EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRDLFVDIKEK 138

Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196
            I            ++          L   N     +AHD   D Y    L   I     
Sbjct: 139 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNVD 189

Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256
                +     +     +    +                N  ++       +     +  
Sbjct: 190 IQNLLIIRDIIRPPFNDINSNLD-NCFNKFKESLYKKEGNYNIVDFSVEIIKTVRMYLLT 248

Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316
            +  +++  + +  +           +++      +++V+L+   +L  +   +    E 
Sbjct: 249 IIDVNIQNLEIMKDINKKMDTIDKLKDIEEGYFYLLEDVYLDMKDVLEDLMLYRMNEDEY 308

Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341
                         L  +    ++ 
Sbjct: 309 KYEIKNIIKMFDEDLDNEKIYINKC 333


>gi|56461520|ref|YP_156801.1| EXOIII family exonuclease [Idiomarina loihiensis L2TR]
 gi|56180530|gb|AAV83252.1| EXOIII family exonuclease [Idiomarina loihiensis L2TR]
          Length = 192

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 39/192 (20%), Gaps = 31/192 (16%)

Query: 5   FVIYDYETF-------GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
           ++I D E         G D           +F  V  +      +    F  +P      
Sbjct: 12  YLIVDLEATCWDGNVEGLDRKQTVDDMEIIEFGCVIAEDNGTVRD-YRSFMVRPQSHPNL 70

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +T I         V        I Q+         G       +  S      N
Sbjct: 71  SEFCTQLTSIAQSDVDAAPV-YQSVVPEIDQWLKNYKLEGWGSWGNYDKNQISAEQRRHN 129

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
               +                            +W      + S  L +    +G+    
Sbjct: 130 LAPEFFSLSHMNIK------------------QEWRRGKVNSRSADLANAMKYHGLSFEG 171

Query: 174 AHDAKADVYATL 185
            H    D    +
Sbjct: 172 THHRGIDDALNI 183


>gi|260683975|ref|YP_003215260.1| putative exonuclease [Clostridium difficile CD196]
 gi|260687635|ref|YP_003218769.1| putative exonuclease [Clostridium difficile R20291]
 gi|260210138|emb|CBA64294.1| putative exonuclease [Clostridium difficile CD196]
 gi|260213652|emb|CBE05490.1| putative exonuclease [Clostridium difficile R20291]
          Length = 345

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/325 (9%), Positives = 83/325 (25%), Gaps = 12/325 (3%)

Query: 17  VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76
           V          V  D + + I+  +    +P  +    P    +T I+ ++         
Sbjct: 24  VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 81

Query: 77  EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136
           E  R+  ++  + +     Y     D     N   R+   +    + N      +    +
Sbjct: 82  EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRDLFVDIKEK 141

Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196
            I            ++          L   N     +AHD   D Y    L   I     
Sbjct: 142 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNVD 192

Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256
                +     +     +    +                N  ++       +     +  
Sbjct: 193 IQNLLIIRDIIRPPFNDINSNLD-NCFNKFKESLYKKEGNYNIVDFSVEIIKTVRMYLLT 251

Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316
            +  +++  + +  +           +++      +++V+L+   +L  +   +    E 
Sbjct: 252 IIDVNIQNLEIMKDINKKMDTIDKLKDIEEGYFYLLEDVYLDMKDVLEDLMLYRMNEDEY 311

Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341
                         L  +    ++ 
Sbjct: 312 KYEIKNIIKMFDEDLDNEKIYINKC 336


>gi|229134359|ref|ZP_04263172.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           BDRD-ST196]
 gi|228648980|gb|EEL05002.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           BDRD-ST196]
          Length = 273

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 55/235 (23%), Gaps = 22/235 (9%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V++D    + I                      +TGIT +  +  G    +  
Sbjct: 18  EIVDIGAVKIDVSTMKVIGEFSEL---VKPSAPLTRHTTKLTGITKKDLIGVG-NFPQII 73

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
            +  QF    ++  + +    +         Y               SR+D+   +   Y
Sbjct: 74  EKFIQFIGE-DSIFVSWGKEDYRFLSQDCTLYGVECPCMEKE-----SRFDVQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
               +    PS         L              H A AD   T  +   +  +   + 
Sbjct: 128 EELFE--HTPSLQFAVDQLGLT--------WEGKQHRALADAENTANIFLKVYGE-RDIN 176

Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254
           +    +     ++     +     +         ++        A+        I
Sbjct: 177 KRYKRHGELELVKNGKLTEKAKKRMRKWVFKELRKNTERPFVWSAFESSDTWESI 231


>gi|153879658|ref|ZP_02004868.1| exonuclease [Beggiatoa sp. PS]
 gi|152063878|gb|EDN65132.1| exonuclease [Beggiatoa sp. PS]
          Length = 65

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)

Query: 9  DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
          D ET G D       + A +  D++   + +  V   +P  + +       I GIT  + 
Sbjct: 2  DTETTGLD-DNAEIVEIAII--DKEERTLINQLVKPTQPIPNEVIG-----IHGITDDEV 53

Query: 69 LRDGVV 74
           +    
Sbjct: 54 KKAPTF 59


>gi|255656372|ref|ZP_05401781.1| putative exonuclease [Clostridium difficile QCD-23m63]
          Length = 342

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/325 (9%), Positives = 84/325 (25%), Gaps = 12/325 (3%)

Query: 17  VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76
           V          V  D + + I+  +    +P  +    P    +T I+ ++         
Sbjct: 21  VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 78

Query: 77  EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136
           E  R+  ++  + +     Y     D     N   R+   +    + N      +    +
Sbjct: 79  EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRNLFVDIKEK 138

Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196
            I            ++          L   N     +AHD   D Y    L   I     
Sbjct: 139 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNID 189

Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256
                +     +     +    +         ++    +   ++       +     +  
Sbjct: 190 IQNLLIIRDIIRAPFNDINSNLDNCFDKFKESLYKKEENYN-IVDFSVEIIKTVRMYLLT 248

Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316
            +  +++  + +  +           +++      +++V+ +   IL  +   +    E 
Sbjct: 249 IIDVNIQNLEVMKDISKKMDTIDKLKDIEEGYFYLLEDVYFDMKDILEDLMLYRMHEDEY 308

Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341
                         L  +    ++ 
Sbjct: 309 KHEIENIIKMLDEDLDNEKIYINKC 333


>gi|226349765|ref|YP_002776879.1| putative exonuclease [Rhodococcus opacus B4]
 gi|226245680|dbj|BAH56027.1| putative exonuclease [Rhodococcus opacus B4]
          Length = 240

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 12/114 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           VI D ET   D       + A +        +++          D    P A  + GI+ 
Sbjct: 41  VILDTETSDLD---GSILEVAVIDAATGAVLLDTLVD-----PGDVQIHPAAAAVHGISA 92

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            + +       ++        +V    ++   N  FD        +R+  D   
Sbjct: 93  AQLIGAP----DWPTVFSALAAVTADRVVLAYNASFDQSRIVYDCHRHGLDPLH 142


>gi|296450179|ref|ZP_06891940.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296878560|ref|ZP_06902565.1| exonuclease superfamily protein [Clostridium difficile NAP07]
 gi|296260942|gb|EFH07776.1| exonuclease superfamily protein [Clostridium difficile NAP08]
 gi|296430367|gb|EFH16209.1| exonuclease superfamily protein [Clostridium difficile NAP07]
          Length = 345

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/325 (9%), Positives = 84/325 (25%), Gaps = 12/325 (3%)

Query: 17  VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76
           V          V  D + + I+  +    +P  +    P    +T I+ ++         
Sbjct: 24  VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 81

Query: 77  EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136
           E  R+  ++  + +     Y     D     N   R+   +    + N      +    +
Sbjct: 82  EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRNLFVDIKEK 141

Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196
            I            ++          L   N     +AHD   D Y    L   I     
Sbjct: 142 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNID 192

Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256
                +     +     +    +         ++    +   ++       +     +  
Sbjct: 193 IQNLLIIRDIIRAPFNDINSNLDNCFDKFKESLYKKEENYN-IVDFSVEIIKTVRMYLLT 251

Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316
            +  +++  + +  +           +++      +++V+ +   IL  +   +    E 
Sbjct: 252 IIDVNIQNLEVMKDISKKMDTIDKLKDIEEGYFYLLEDVYFDMKDILEDLMLYRMHEDEY 311

Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341
                         L  +    ++ 
Sbjct: 312 KHEIENIIKMLDEDLDNEKIYINKC 336


>gi|311259462|ref|XP_003128134.1| PREDICTED: ERI1 exoribonuclease 3-like [Sus scrofa]
          Length = 232

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 68  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 127

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           I             +   R+ ++ +   
Sbjct: 128 IIQAMVDGQP-SLQQVLERVDEWMAKEG 154


>gi|55959492|emb|CAI12492.1| prion protein interacting protein [Homo sapiens]
          Length = 250

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 144 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 203

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           I             +   R+ ++ +   
Sbjct: 204 IIQAMVDGQP-SLQQVLERVDEWMAKEG 230


>gi|119627447|gb|EAX07042.1| prion protein interacting protein, isoform CRA_a [Homo sapiens]
          Length = 213

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 68  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 127

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           I             +   R+ ++ +   
Sbjct: 128 IIQAMVDGQP-SLQQVLERVDEWMAKEG 154


>gi|109475366|ref|XP_233435.4| PREDICTED: exoribonuclease 3 [Rattus norvegicus]
          Length = 406

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 299 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 358

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           I             +   R+ ++ +   
Sbjct: 359 IIQAMVDGQP-SLQQVLERVDEWMAKEG 385


>gi|33867257|ref|NP_898815.1| putative exonuclease X [Rhodococcus erythropolis]
 gi|33669091|gb|AAP74085.1| putative exonuclease X [Rhodococcus erythropolis]
          Length = 201

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 12/111 (10%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
           I D ET G         + A +        +++     C P      +P+A  +  IT  
Sbjct: 32  ILDVETSGL---EGSIIEVAVIDAASGAVLLDTLVD--CGP---VQIEPDAHAVHSITAA 83

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                     E   ++    S     ++ YN  +FD     +  +R+  D 
Sbjct: 84  DLDDAPR-WPEVFAQLAAITS--GRQVLAYNA-QFDQGRVLHDCHRSGIDP 130


>gi|73977195|ref|XP_862437.1| PREDICTED: similar to prion protein interacting protein 1 isoform 3
           [Canis familiaris]
          Length = 208

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 68  FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 127

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           I             +   R+ ++ +   
Sbjct: 128 IIQAMVDGQP-SLQQVLERVDEWMAKEG 154


>gi|71281793|ref|YP_271594.1| exonuclase [Colwellia psychrerythraea 34H]
 gi|71147533|gb|AAZ28006.1| exonuclase [Colwellia psychrerythraea 34H]
          Length = 228

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 59/206 (28%), Gaps = 31/206 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF----- 59
            +  D+ET G +   D+      +            +    K +   +   +A       
Sbjct: 44  ILAVDFETTGLNAKQDKLLSVGFL--------TLKKQQMSLKTSYHQIIKTKAQLEESNV 95

Query: 60  -ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I  IT  +    G   A     + +  +     ++  +  R +  +     Y  +    
Sbjct: 96  IIHHITDSQ-KEQGQALAIVVEALLKALA---GKVMLVHFARIERQFLAEACYELY---- 147

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                     + ++D +    A +   +         +  +L +L     +   +AH+A 
Sbjct: 148 -----GMAPIFPMIDTL----ALAKRRLDKRDVAYDPSELRLTNLRNNFQLPEHHAHNAL 198

Query: 179 ADVYATLALVWLIREKKPKLFEYLYD 204
            D  AT  L      K  K  +    
Sbjct: 199 NDAIATAELFMAQMSKANKDGKTTLK 224


>gi|183602498|ref|ZP_02963863.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683541|ref|YP_002469924.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190572|ref|YP_002967966.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|183218139|gb|EDT88785.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621191|gb|ACL29348.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248964|gb|ACS45904.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|295793559|gb|ADG33094.1| oligoribonuclease [Bifidobacterium animalis subsp. lactis V9]
          Length = 217

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 19/128 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----AVFI- 60
           +  D E  G D+  D   + + V  D +   ++       KP++  +   +    A+   
Sbjct: 18  IWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDKGIDLVIKPSEAAVAHMDDFVRAMHTR 77

Query: 61  --------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                    G++ Q+A      E +    + QF       ++  N++  D  +       
Sbjct: 78  SGLIDEWENGLSVQEA------ERQVIDYVQQFIPQGVKPLLAGNSVGSDKKFLDRFMPN 131

Query: 113 NFYDSYRW 120
                +  
Sbjct: 132 LMEHLHYR 139


>gi|304360814|ref|YP_003856935.1| gp57 [Mycobacterium phage Angelica]
 gi|302858398|gb|ADL71146.1| gp57 [Mycobacterium phage Angelica]
          Length = 184

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 58/195 (29%), Gaps = 19/195 (9%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           M    ++ D ET   D     P + A + VD        +  F      + L   DP+A+
Sbjct: 1   MARQLIVVDLETTSLDYDTAAPLEVALLNVD-----TGESLRFVPHVTCEQLGAADPKAM 55

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            I G   +   R+ + E + +    +            +N  FD            + + 
Sbjct: 56  EINGYYERGVWREALTEHQTAVAWSEVKDWLRDNTFAGSNPAFDSAIVARQAAGGMFPAP 115

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                       L D+                  D A    L D+A   G++    H A 
Sbjct: 116 I----GRVWHHRLADLAAYSAGKL--------DRDPAELVGLDDVAERLGVQVAQRHTAI 163

Query: 179 ADVYATLALVWLIRE 193
            D  AT     L+R 
Sbjct: 164 GDAAATGLCFDLLRN 178


>gi|260768515|ref|ZP_05877449.1| hypothetical protein VFA_001567 [Vibrio furnissii CIP 102972]
 gi|260616545|gb|EEX41730.1| hypothetical protein VFA_001567 [Vibrio furnissii CIP 102972]
 gi|315180227|gb|ADT87141.1| hypothetical protein vfu_A01985 [Vibrio furnissii NCTC 11218]
          Length = 156

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 4/121 (3%)

Query: 20  DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
               +     +D    +I     ++ KP  D +     V +TGITP+K  + G   A   
Sbjct: 5   GEIIEVGLAEIDLTAGEIVKRAQYYVKPEHDEV-SLFCVELTGITPRKIEKQGRPLAAVI 63

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           + + + F         +     DD            D     + N  + + +   ++   
Sbjct: 64  QSMVKNFGGSQKIYASW---GRDDQILMKECQAKGIDMPFKEFINLATLYRIQHRLKDKR 120

Query: 140 A 140
            
Sbjct: 121 I 121


>gi|257453441|ref|ZP_05618736.1| oligoribonuclease Orn [Enhydrobacter aerosaccus SK60]
 gi|257449193|gb|EEV24141.1| oligoribonuclease Orn [Enhydrobacter aerosaccus SK60]
          Length = 183

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 9/127 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE---AV 58
             H +  D E  G D   D   + A +  D +   +    VF      D + +       
Sbjct: 5   KKHLIWIDLEMTGLDTLSDTIIEIATIVTDSELNILAEGPVFAIH-TPDIVLNSMDDWNT 63

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
              G +    +  R  V  A+       F S         +  N+I  D  +        
Sbjct: 64  RQHGQSGLIDRIRRSNVTMAQAETETIAFLSKYVESGRSPMCGNSICQDRRFLARQMPTL 123

Query: 114 FYDSYRW 120
               +  
Sbjct: 124 ERFFHYR 130


>gi|305680783|ref|ZP_07403590.1| oligoribonuclease [Corynebacterium matruchotii ATCC 14266]
 gi|305658988|gb|EFM48488.1| oligoribonuclease [Corynebacterium matruchotii ATCC 14266]
          Length = 209

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 12/37 (32%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          +  V  D E  G D+      + A +  D     +  
Sbjct: 8  DRIVWIDLEMTGLDIHEHTIVEVAALITDADLNVLGE 44


>gi|125534582|gb|EAY81130.1| hypothetical protein OsI_36313 [Oryza sativa Indica Group]
          Length = 192

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFI 60
           FV+ D E     GR +      +FA V VD    E++      + +P            +
Sbjct: 23  FVVIDLEATCERGRRIYPQEIIEFASVVVDGATGEQLAEAFRAYVRPLHHRELTDYCREL 82

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           TGI        GV   E  R    +     
Sbjct: 83  TGIAQADV-DAGVDLREALRAHDAWLDARG 111


>gi|311087943|gb|ADP68022.1| oligoribonuclease [Buchnera aphidicola str. JF98 (Acyrthosiphon
          pisum)]
          Length = 178

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
            + +  D E  G +  + R  + A +  D     I  
Sbjct: 5  KKNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAE 42


>gi|52843158|ref|YP_096957.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|19880967|gb|AAM00600.1| Rnase T [Legionella pneumophila]
 gi|52630269|gb|AAU29010.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 207

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 27/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   +   V +D   + +   +  +     P      D +++    
Sbjct: 22  VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKDSSYFEHILPFPGAELDQKSLEFNQ 81

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P +    A+ +        + IH           ++  +N  FD  + +    R    
Sbjct: 82  IDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           S   ++                     D         G T       A     +   AH 
Sbjct: 142 SPFHAFT------------------CFDTATLAGLIFGETVLAKAAQAAGLHFDSQEAHS 183

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L  L+  K
Sbjct: 184 AIYDAEKTADLFCLMINK 201


>gi|85814043|emb|CAH05238.1| DNA polymerase III, epsilon subunit [Micromonospora echinospora]
          Length = 386

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 24  QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83
           + A V +D Q                D    P++  + GI+  +A R      + + +I 
Sbjct: 2   EVAVVHLDDQGNLTREWCSL---VNPDRDLGPQS--VHGISAAEARRAP-TFGQLAGQIA 55

Query: 84  QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           +        ++  +N+ FD  +    F R   
Sbjct: 56  ELLKDR---VVVAHNLSFDARFLTAEFERLGI 84


>gi|315092205|gb|EFT64181.1| conserved domain protein [Propionibacterium acnes HL110PA4]
          Length = 88

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 9/79 (11%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
          VI D ET   D    R  + + +  D       +  +             EA  +  I+P
Sbjct: 17 VILDTETTDLD---GRIIEISII--DAA---TGTVLMNQLINPQGAPIYAEARTVHHISP 68

Query: 66 QKALRDGVVEAEFSRRIHQ 84
                     +   R+  
Sbjct: 69 DDLATAP-TFTQVWPRLED 86


>gi|322387766|ref|ZP_08061375.1| DNA polymerase III subunit epsilon [Streptococcus infantis ATCC
           700779]
 gi|321141633|gb|EFX37129.1| DNA polymerase III subunit epsilon [Streptococcus infantis ATCC
           700779]
          Length = 196

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 32/195 (16%)

Query: 5   FVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +D E    +   D+    Q + V   ++ E++ + + +      D         +TG
Sbjct: 7   YISFDLE---FNRHQDKTHLIQVSAVHF-KEGEEVGAFDSY---VYTDAPLKSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       VE E  ++   F    N  +IGYN  + D        +      Y   +
Sbjct: 60  ITSETLKGAPKVE-EVLQKFQVFV--GNLPLIGYNAAKSDLPILLEHGF-----DYSHQY 111

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                          +  ++    +  S   G  + KLQ +A   G +   +H++  D  
Sbjct: 112 L--------------VDVYNEALERRSSDLHGIANLKLQTVANFLGFK-GQSHNSLEDAR 156

Query: 183 ATLALVWLIREKKPK 197
            T  +     +    
Sbjct: 157 MTARVYEAFLDSDES 171


>gi|262165616|ref|ZP_06033353.1| hypothetical protein VMA_002063 [Vibrio mimicus VM223]
 gi|262171593|ref|ZP_06039271.1| hypothetical protein VII_002415 [Vibrio mimicus MB-451]
 gi|261892669|gb|EEY38655.1| hypothetical protein VII_002415 [Vibrio mimicus MB-451]
 gi|262025332|gb|EEY44000.1| hypothetical protein VMA_002063 [Vibrio mimicus VM223]
          Length = 156

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 10/132 (7%)

Query: 12  TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71
           T G         +     +D    KI     +F KP  D +       +TGITP+K  + 
Sbjct: 3   TTG------EIIEVGLAEIDLSAGKIVKRAQYFVKPEKDEI-SLFCAELTGITPRKIEKQ 55

Query: 72  GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131
           G    E  + + + F   N     +     DD    N             + N  + + +
Sbjct: 56  GRPLVEVLQSMVKNFGGSNKIYASW---GRDDLILINECREKGIPVPFQEFLNLATLYRI 112

Query: 132 LDVMRAIYAFSP 143
              ++       
Sbjct: 113 QHRLKDKRIGHR 124


>gi|225021633|ref|ZP_03710825.1| hypothetical protein CORMATOL_01658 [Corynebacterium matruchotii
          ATCC 33806]
 gi|224945624|gb|EEG26833.1| hypothetical protein CORMATOL_01658 [Corynebacterium matruchotii
          ATCC 33806]
          Length = 209

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 12/37 (32%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          +  V  D E  G D+      + A +  D     +  
Sbjct: 8  DRIVWIDLEMTGLDIHEHTIVEVAALITDADLNVLGE 44


>gi|121604376|ref|YP_981705.1| oligoribonuclease [Polaromonas naphthalenivorans CJ2]
 gi|120593345|gb|ABM36784.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas
           naphthalenivorans CJ2]
          Length = 187

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFI 60
            + V  D E  G D   +R  + A V    Q        V     +D+ L   +      
Sbjct: 13  QNLVWLDCEMTGLDPEKERIIEIAVVVTGPQLTPRIEGPVLAIHQSDELLDQMDKWNKGT 72

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    K     V E +   ++  F +      T  +  N I  D  +      +   
Sbjct: 73  HGRSGLIDKVKASTVTEEDAQAQLLAFLARYVPKGTTPMCGNTIGQDRRFLAKYMPKLEL 132

Query: 116 DSYRW 120
             +  
Sbjct: 133 FFHYR 137


>gi|91217110|ref|ZP_01254072.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC
           700755]
 gi|91184710|gb|EAS71091.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC
           700755]
          Length = 424

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 62/198 (31%), Gaps = 24/198 (12%)

Query: 5   FVIYDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           ++I D ET G               Q A V  +++   ++   +      D    +  + 
Sbjct: 242 YLIVDIETSGLPQKTANGTNYPEIIQIAWVVTNKKGLVLKKNSIIIE--TDFIKENNYSS 299

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +  I  + A +         +++ +   + +  ++ +N                     
Sbjct: 300 IVN-IDFEVARKVMFPLQHALKKLTEDIKICD-YVVSHNTDFDLSILGHYYTKLYGI--- 354

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVNAHDA 177
                N  SR   +  M++   +     ++  +       KL +L       E  N+H+A
Sbjct: 355 -----NPLSRKATICTMKSTVNYCKIPNKFGYKFP-----KLSELYNKLFDYEVKNSHNA 404

Query: 178 KADVYATLALVWLIREKK 195
           + DV  TL     ++   
Sbjct: 405 EIDVLHTLKCFKKLKSIN 422


>gi|182417131|ref|ZP_02948504.1| exonuclease [Clostridium butyricum 5521]
 gi|237669064|ref|ZP_04529048.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378973|gb|EDT76479.1| exonuclease [Clostridium butyricum 5521]
 gi|237657412|gb|EEP54968.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 205

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 37/224 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
             + +D ET           Q + + VD   +  + + + FF    +    DP A  I G
Sbjct: 2   KLLFFDTETTSIKP--GSICQLSYITVDASTKPQVTTGKNFFFTVDE---MDPSAQEIHG 56

Query: 63  ITPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            + +K   L +G    + +      F   +   I  +N+ FD  + ++  +         
Sbjct: 57  FSLEKLYELSEGQYFEDLAFDFINDFREAD--FIIGHNVNFDIRFLKHELFTLG------ 108

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--------- 171
                         +    A+  D  + P  +    + KL ++     +           
Sbjct: 109 -------ELFEPKNIFCTMAYYKDICRIPKANGEIKNPKLSEVIDWLNVSEKQIAETSEK 161

Query: 172 -----VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
                 N HDA+ D  AT   V    +K      Y  +   +  
Sbjct: 162 LFEGSGNYHDARFDTAATYLTVIEGLKKGHIAKGYFTNILKQQN 205


>gi|330984568|gb|EGH82671.1| oligoribonuclease [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 178

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
             + +  D E  G D  +D   + A +  D +   +    V     +D+ L   D     
Sbjct: 4   KQNLIWIDLEMTGLDPDIDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTR 63

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q+     +  AE      +F  +        I  N+I  D  +         
Sbjct: 64  QHGGSGLTQRVRESTISMAEAEAHTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLE 123

Query: 115 YDSYRW 120
              +  
Sbjct: 124 NWFHYR 129


>gi|219872207|ref|YP_002476582.1| oligoribonuclease [Haemophilus parasuis SH0165]
 gi|219692411|gb|ACL33634.1| oligoribonuclease [Haemophilus parasuis SH0165]
          Length = 168

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 32/120 (26%), Gaps = 15/120 (12%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPDPEAVFITGIT 64
            G D   +R  + A +  D+    +           +    K ++  +    A    G+ 
Sbjct: 2   TGLDPEKERIIEIATIITDKDLNILAEGPVLAVYQPDELLNKMSEWCVKTHTA---NGL- 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ++  +  + E     +   F           I  N+I  D  +            +   
Sbjct: 58  VERVKQSKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLYKYMPNLADYFHYRH 117


>gi|146281584|ref|YP_001171737.1| ribonuclease T [Pseudomonas stutzeri A1501]
 gi|145569789|gb|ABP78895.1| ribonuclease T [Pseudomonas stutzeri A1501]
          Length = 203

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 66/218 (30%), Gaps = 37/218 (16%)

Query: 1   MTNHF-----VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPAD--DY 51
           M   F     V+ D E  G + A D   + A V +  D Q   +   +  F +       
Sbjct: 1   MARRFRGFLPVVIDVECGGFNCATDALLEIAAVTIGMDEQG-LLYPQDTLFYRVEPFAGA 59

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYY 105
             +P A+  TGI     LR  V E +    I +              I+  +N  FD  +
Sbjct: 60  NIEPAALEFTGIKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGF 119

Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
                 R       +      S +D   +    Y  +                 L     
Sbjct: 120 LNAAIARCEIKRNPFH---PFSSFDTATLAGLAYGQTV----------------LAKACQ 160

Query: 166 ANGIEHV--NAHDAKADVYATLALVWLIREKKPKLFEY 201
           A GI+     AH A+ D   T  L   I  +  ++  +
Sbjct: 161 AAGIDFDGREAHSARYDTEKTAELFCGIVNRWKEMGGW 198


>gi|157737359|ref|YP_001490042.1| hypothetical protein Abu_1113 [Arcobacter butzleri RM4018]
 gi|315637075|ref|ZP_07892298.1| exonuclease superfamily protein [Arcobacter butzleri JV22]
 gi|157699213|gb|ABV67373.1| hypothetical protein Abu_1113 [Arcobacter butzleri RM4018]
 gi|315478611|gb|EFU69321.1| exonuclease superfamily protein [Arcobacter butzleri JV22]
          Length = 171

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 61/193 (31%), Gaps = 32/193 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D+ET   ++      + A V++D+ +  ++    ++         +  +  +  +TP
Sbjct: 2   IILDFETNTNNI--GDVLEIAAVKIDKNFNILDKFHRYYLSRFP---LNFYSYEVHRLTP 56

Query: 66  QKA----LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           +                     + F   +  +I +N      + +  + ++N   +    
Sbjct: 57  ELILDYRKDKNYSSYFSEDEDFEKFCYESETLIAHNISFELRHINNRVKFKNCICTMSE- 115

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKA 179
                               + + +    ++    + KL +     GIE      H A  
Sbjct: 116 --------------------NKNIVNVFGKNGRIKNPKLDETCNYYGIEFDASKYHSATY 155

Query: 180 DVYATLALVWLIR 192
           DV  T  ++  + 
Sbjct: 156 DVTKTYEILKRMN 168


>gi|261856160|ref|YP_003263443.1| exonuclease RNase T and DNA polymerase III [Halothiobacillus
          neapolitanus c2]
 gi|261836629|gb|ACX96396.1| Exonuclease RNase T and DNA polymerase III [Halothiobacillus
          neapolitanus c2]
          Length = 183

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          T + +  D E  G D   D   + A +  D+    +  
Sbjct: 7  TENLIWIDLEMTGLDPMTDTIIEMATLVTDKHLNILAE 44


>gi|333027435|ref|ZP_08455499.1| putative exonuclease [Streptomyces sp. Tu6071]
 gi|332747287|gb|EGJ77728.1| putative exonuclease [Streptomyces sp. Tu6071]
          Length = 219

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 33/139 (23%), Gaps = 14/139 (10%)

Query: 42  VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNI 99
                        PE   I GI   KA  +G         I    +        +   N+
Sbjct: 10  TMSWLINPGVPIPPETTEIHGIDDAKATAEGADPKAALDEIAGRLAQALLYGMPVVAFNL 69

Query: 100 RFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGATS 157
            +D         R+   S            D L  + A        I  Q      G   
Sbjct: 70  AYDWTVLTRELERHGLPSMA----------DRLPGLSAPALVDSHVIDKQVDKYVRGTGR 119

Query: 158 FKLQDLALANGIEHVNAHD 176
            KLQ      G+   + H 
Sbjct: 120 RKLQPTCERYGVVLEDWHT 138


>gi|184201097|ref|YP_001855304.1| oligoribonuclease [Kocuria rhizophila DC2201]
 gi|183581327|dbj|BAG29798.1| oligoribonuclease [Kocuria rhizophila DC2201]
          Length = 199

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 17/114 (14%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
             D E  G  ++ D   + A +  D +   + S      KP     P      +      
Sbjct: 2   WIDCEMTGLSLSEDALIEVAALVTDDELNVLGSGVDVVIKP-----PQQALEQMNDFVRT 56

Query: 67  KALRDG-VVEAE-----------FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                G + E E               I ++        +G N++  D  +   
Sbjct: 57  MHENSGLLPELERGMDMAQAQAMVLDYIREWVPDAGKAPLGGNSVGTDKTFLTR 110


>gi|302531526|ref|ZP_07283868.1| predicted protein [Streptomyces sp. AA4]
 gi|302440421|gb|EFL12237.1| predicted protein [Streptomyces sp. AA4]
          Length = 524

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 46/191 (24%), Gaps = 34/191 (17%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D +T G      R  + A +R       +          A    P         IT
Sbjct: 77  FTALDVKTTGLHT--GRVLEVAAIRFRGDGTFLGEFATVVAADASRRNP-------HRIT 127

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
             +           S  + + F +    ++  +++            +            
Sbjct: 128 AAELADAPA----LSGILGRLFELCQGAVLVAHDLSSV-EGLLTEIGQLG---------- 172

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                     +R     +              +++L  +A A GIE    + A+    A 
Sbjct: 173 ----------VRLPRLPAISLKDTAQAALPLPNYRLATIARAFGIEDFPGYLAEPAARAC 222

Query: 185 LALVWLIREKK 195
              +  +    
Sbjct: 223 AQAMLALVGTH 233


>gi|194041195|ref|XP_001926820.1| PREDICTED: three prime repair exonuclease 1-like [Sus scrofa]
          Length = 314

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 58/210 (27%), Gaps = 35/210 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDR------------------QWEKIESTEVFF 44
              +  D E  G   +  +  +   + V R                      ++      
Sbjct: 12  QTLIFLDLEATGLPFSQPKVTELCLLAVHRCALESLPIPQGPSPTVPPPPRVLDKLS--L 69

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDGVVEAEF--SRRIHQFFSV--PNTCIIGYNNIR 100
           C  A      P A  ITG++       G    +   +  +  F       +C++ +N  R
Sbjct: 70  C-VAPGKACSPAASEITGLSTAVLAAHGRQYFDANLANLLRAFLQRQPQPSCLVAHNGDR 128

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +         S            D   V       + +     S      S+ L
Sbjct: 129 YDFPLLQAELAMLGLASALD---------DTFCVDSIAALKALEQADGSSEHGPRKSYSL 179

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 180 GSIYTRLYGQAPPDSHTAEGDVLALLSICQ 209


>gi|242078555|ref|XP_002444046.1| hypothetical protein SORBIDRAFT_07g006350 [Sorghum bicolor]
 gi|241940396|gb|EES13541.1| hypothetical protein SORBIDRAFT_07g006350 [Sorghum bicolor]
          Length = 122

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 1  MTNHFVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPE 56
          M + FV+ D+E     G  +      +F  V VD      + +    + +P         
Sbjct: 1  MFDFFVVIDFEATCQEGSVIYPQEIIEFTSVLVDGATGRTLSTFRT-YVRPRHHPCLTDF 59

Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT 91
             +TGIT       GV  AE      ++      
Sbjct: 60 YRDLTGITQDDV-DAGVSLAEALEMHDRWLEEHGA 93


>gi|194226477|ref|XP_001915858.1| PREDICTED: similar to histone mRNA 3 end-specific exonuclease
           [Equus caballus]
          Length = 349

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT            +  R++  +  +         + +   +         +    R 
Sbjct: 190 TGITQDLVDGAD-TFPQVLRKVVDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCRLSRL 248

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 249 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 298


>gi|224049609|ref|XP_002196066.1| PREDICTED: three prime histone mRNA exonuclease 1 [Taeniopygia
           guttata]
          Length = 387

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 58/195 (29%), Gaps = 17/195 (8%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             + D+E     G          +F  V V+ +  +IE T   + KP  +       + +
Sbjct: 168 ICVVDFEATCEEGNPPEFVHEIIEFPVVLVNTRTLEIEDTFQQYVKPEINPKLSDFCISL 227

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT     +   +  +  + + ++            ++  D  +  + F        R 
Sbjct: 228 TGITQDIVDKAD-IFPQVLQNVIEWMRQRELGTKYSYSMLTDGSWDMSKFLNTQCRISRI 286

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
            + +   +W        I     +  + P         KL  +    G+ +    H    
Sbjct: 287 KYPSFAKKW------INIRKSYGNFYKVPRNQT-----KLTIMLENLGMNYDGRPHSGLD 335

Query: 180 DVYATLALVWLIREK 194
           D      +   + + 
Sbjct: 336 DSKNIARIAIRMLQD 350


>gi|315443587|ref|YP_004076466.1| oligoribonuclease (3'->5' exoribonuclease) [Mycobacterium sp.
           Spyr1]
 gi|315261890|gb|ADT98631.1| oligoribonuclease (3'->5' exoribonuclease) [Mycobacterium sp.
           Spyr1]
          Length = 206

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 54/202 (26%), Gaps = 44/202 (21%)

Query: 7   IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
             D E  G D+  D   + A +  D +   +          A+D   D     +T    Q
Sbjct: 2   WIDCEMTGLDLKTDLLIEIAVLVTDSELNILGDGLDVVIH-AEDSALDSMIDVVT----Q 56

Query: 67  KALRDGVVE-----------AE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
              + G++E           AE      I +      T  +  N+I  D  +      + 
Sbjct: 57  MHTKSGLIEEVRASTVDVATAEDMVMTYIREHVRQAKTAPLAGNSIATDRGFLARDMPK- 115

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D Y        S    L        +                            E   
Sbjct: 116 -LDDYLHYRMIDVSSIKELCRRWYPRIYFG------------------------QPEKGL 150

Query: 174 AHDAKADVYATLALVWLIREKK 195
           AH A AD++ ++  +   R+  
Sbjct: 151 AHRALADIHESIRELRYYRQTA 172


>gi|222628577|gb|EEE60709.1| hypothetical protein OsJ_14204 [Oryza sativa Japonica Group]
          Length = 142

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYLP 53
              V  D E  G D+  DR  + A +  D +  ++IE +    C    D   
Sbjct: 69  KPLVWIDLEMTGLDITKDRILEIACIITDGKLTKRIEVSIETKCFCNSDCSI 120


>gi|213401823|ref|XP_002171684.1| oligoribonuclease [Schizosaccharomyces japonicus yFS275]
 gi|211999731|gb|EEB05391.1| oligoribonuclease [Schizosaccharomyces japonicus yFS275]
          Length = 187

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 37/128 (28%), Gaps = 16/128 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST--------EVFFCKPADDYLPDPE 56
            V  D E  G +V  D   + A +  D     IE          +    +  D  +    
Sbjct: 9   LVWVDCEMTGLEVGKDVLMEVAAIITDGDLNPIEEKFEETIHVDDDKLRQMNDWCIDHHG 68

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIFYR 112
           A  +T    ++  +      +  +++  +           +I  N++  D  +      +
Sbjct: 69  ASGLT----ERCRQCKQSVNQVEQKLLNYIQKYIPRRREALIAGNSVHADVRFLTVEMPK 124

Query: 113 NFYDSYRW 120
                +  
Sbjct: 125 VIEHLHYR 132


>gi|320583877|gb|EFW98090.1| 3'-5' RNA exonuclease [Pichia angusta DL-1]
          Length = 374

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 10/125 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---------TEVFFCKPADDYLPDP 55
            V  D E  G D+  D   +   +  D+    I+          ++    +  +      
Sbjct: 35  IVWIDCEMTGLDLLNDHIIEICALVTDKHLRLIDDEGFEAVIHYSQERMNQMDEWCRTHH 94

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T    + +     VE +    + ++ S     + G N++  D  +      +   
Sbjct: 95  GDSGLTKKVVESSNTLEDVENQLLEYLSKYMSKGVGILAG-NSVHVDRQFLCKEMPKITD 153

Query: 116 DSYRW 120
                
Sbjct: 154 YLTYR 158


>gi|270292817|ref|ZP_06199028.1| exonuclease [Streptococcus sp. M143]
 gi|270278796|gb|EFA24642.1| exonuclease [Streptococcus sp. M143]
          Length = 196

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 32/194 (16%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +D E    +         Q + VR  +  ++  + + +                +TG
Sbjct: 7   YIAFDLE---FNQHEGVTHLIQVSAVRF-QDGQESAAFDSY---VHTSVPLKSFINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +       VE +  +    F       I+GYN  + D                    
Sbjct: 60  ITAETLKDAPKVE-KVLKDFQAFVGDLP--IVGYNAAKSDLPILLEHGIDY--------- 107

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                + DL D      +    GI          + KLQ +A   G  H  +H++  D  
Sbjct: 108 -RDQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVANFLGF-HGKSHNSLEDAR 156

Query: 183 ATLALVWLIREKKP 196
            T  +     E   
Sbjct: 157 MTARVYEAFLESDE 170


>gi|308187156|ref|YP_003931287.1| exodeoxyribonuclease X [Pantoea vagans C9-1]
 gi|308057666|gb|ADO09838.1| exodeoxyribonuclease X [Pantoea vagans C9-1]
          Length = 223

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 52/197 (26%), Gaps = 48/197 (24%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDPE 56
           M   F + D ET G         Q   V V        + +            D     +
Sbjct: 1   MM--FRVIDTETCGL--------QGGVVEVASVDVVNGQIVNPMSDLT---LPDRPISRQ 47

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ +  IT         +E E   R +       +     +N  FD         R    
Sbjct: 48  AMAVHRITEAMVAGKPTIE-EAIPRYY------GSAFYVAHNASFD---------RRMLP 91

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                W         +  M+           WP    G  + +            ++AH 
Sbjct: 92  EMYGEW---------ICTMQLARQL------WPGIKYGNQALRHSLKLDVTPPADLHAHR 136

Query: 177 AKADVYATLALVWLIRE 193
           A  D Y T AL+  I E
Sbjct: 137 ALYDCYVTAALLIRIME 153


>gi|262372115|ref|ZP_06065394.1| ribonuclease T [Acinetobacter junii SH205]
 gi|262312140|gb|EEY93225.1| ribonuclease T [Acinetobacter junii SH205]
          Length = 221

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 59/222 (26%), Gaps = 49/222 (22%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--------A 57
           V+ D ET G +   D   + A + +       +    F   PA     +P         +
Sbjct: 25  VVVDVETAGFNSQTDALLEIACIPI-----VYDQQGQFIPGPAFHAHINPFEGANLDRRS 79

Query: 58  VFITGITP------QKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYY 105
           +   GI P        A      E    RRI +  +           ++  +N  FD  +
Sbjct: 80  LDFIGIDPFNPMRVAMAED----ERGALRRIFKSLNEVRKAQHCTHAVLVGHNAHFDLGF 135

Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
            +    R+          N    + + D +          +             L    +
Sbjct: 136 LQAAIARSG-----TKNQNPFHSFSVFDTVTLSAVMFGQTV-------------LARACI 177

Query: 166 ANGIEHV--NAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205
             GIE     AH A  D   T  L   I  K           
Sbjct: 178 QAGIEFDGKEAHSALYDTQKTAELFCYILNKLSPHLLDSLVT 219


>gi|255101554|ref|ZP_05330531.1| putative exonuclease [Clostridium difficile QCD-63q42]
 gi|328887708|emb|CAJ69282.2| putative exonuclease [Clostridium difficile]
          Length = 342

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/325 (9%), Positives = 82/325 (25%), Gaps = 12/325 (3%)

Query: 17  VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76
           V          V  D + + I+  +    +P  +    P    +T I+ ++         
Sbjct: 21  VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 78

Query: 77  EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136
           E  R+  ++  + +     Y     D     N   R+   +    + N      +    +
Sbjct: 79  EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRDLFVDIKEK 138

Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196
            I            ++          L   N     +AHD   D Y    L   I     
Sbjct: 139 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNVD 189

Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256
                +     +     +    +                N  ++       +     +  
Sbjct: 190 IQNLLIIRDIIRPPFNDINSNLD-NCFNKFKESLYKKEGNYNIVDFSVEIIKTVRMYLLT 248

Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316
            +  +++  + +  +           +++      +++V+ +   +L  +   +    E 
Sbjct: 249 IIDVNIQNLEIMKDISKKMDTIDKLKDIEEGYFYLLEDVYFDMKDVLEDLMLYRMNEDEY 308

Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341
                         L  +    ++ 
Sbjct: 309 KYEIKNIIKMFDEDLDNEKIYINKC 333


>gi|218461184|ref|ZP_03501275.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli Kim 5]
          Length = 240

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 28/166 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D+ET   +             +  +   I   E    +P +        + I GI P
Sbjct: 48  IAIDFET--ANEQRGSACSVGLAWI-EEGRVI-RVEERLIRPREMR-FSGMNIAIHGIRP 102

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          E     H  F       +  +N  FD        +R   D YR S+   
Sbjct: 103 EDVEDAPE-FPEVMDEFHDDFR---GATMIAHNAAFDFSV-----WRASLDLYRQSY--- 150

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                    +  + +       WP       S +L  +A   G+  
Sbjct: 151 -------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRF 185


>gi|194758479|ref|XP_001961489.1| GF14994 [Drosophila ananassae]
 gi|190615186|gb|EDV30710.1| GF14994 [Drosophila ananassae]
          Length = 362

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 42/153 (27%), Gaps = 24/153 (15%)

Query: 4   HFVIYDYETFGR---DVALDRPAQF------AGVRVDRQWEKIESTEVFFCKPADDYL-- 52
              + D ET              +       A +  +R+ ++     V    P    +  
Sbjct: 16  TIAVLDLETTNLPAYSHNRVGITELCIHAFDAALLTERKGDEDGKNAVKSILPQPPRVLH 75

Query: 53  -----------PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNI 99
                        P+A   TG++     R+     +    I  F        C++ +N  
Sbjct: 76  KLNLLFQPSMMVHPDAEDATGLSNYLLERESKFSKDSVGLILSFMKHLPAPVCLVAHNGW 135

Query: 100 RFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLL 132
            FD    +    ++  +        G +  D L
Sbjct: 136 NFDFPIIKQALEKHIAEIPSSGLLPGVTCVDSL 168


>gi|126700012|ref|YP_001088909.1| putative exonuclease [Clostridium difficile 630]
          Length = 345

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/325 (9%), Positives = 82/325 (25%), Gaps = 12/325 (3%)

Query: 17  VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76
           V          V  D + + I+  +    +P  +    P    +T I+ ++         
Sbjct: 24  VFNSDIIAIGAVMYDEKTKNIDKFKSLI-RPVSNEELYPHIQELTHISSEELKSAP-SYE 81

Query: 77  EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136
           E  R+  ++  + +     Y     D     N   R+   +    + N      +    +
Sbjct: 82  EVMRKFKKWLGIFSDIKGIYTFGNLDLTCFNNTDMRSAKKNNHPRFVNNIRDLFVDIKEK 141

Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196
            I            ++          L   N     +AHD   D Y    L   I     
Sbjct: 142 YINCGMRCMNYISLKNL---------LEFVNLEFSGDAHDPLNDAYNLFILDEAITNNVD 192

Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGC 256
                +     +     +    +                N  ++       +     +  
Sbjct: 193 IQNLLIIRDIIRPPFNDINSNLD-NCFNKFKESLYKKEGNYNIVDFSVEIIKTVRMYLLT 251

Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316
            +  +++  + +  +           +++      +++V+ +   +L  +   +    E 
Sbjct: 252 IIDVNIQNLEIMKDISKKMDTIDKLKDIEEGYFYLLEDVYFDMKDVLEDLMLYRMNEDEY 311

Query: 317 WGIDHKRCLENLTLLRQQTNLRDRF 341
                         L  +    ++ 
Sbjct: 312 KYEIKNIIKMFDEDLDNEKIYINKC 336


>gi|59712121|ref|YP_204897.1| exonuclease KapD [Vibrio fischeri ES114]
 gi|197336268|ref|YP_002156326.1| exonuclease KapD [Vibrio fischeri MJ11]
 gi|59480222|gb|AAW86009.1| exonuclease KapD [Vibrio fischeri ES114]
 gi|197317758|gb|ACH67205.1| exonuclease KapD [Vibrio fischeri MJ11]
          Length = 176

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 20/137 (14%)

Query: 3   NHFVIYDYET----------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           N  V +D E            G         +     +D    ++     ++ KP  D +
Sbjct: 4   NRIVCFDLEMCCWNENGKGRTG------EIIEVGLAEIDLTKGEVVKRAQYYVKPEKDEI 57

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                V +TGI+P+K  + G   A+  + + + F   N     +     D+         
Sbjct: 58  -SLFCVDLTGISPRKIEKQGRPLADVLKSMVKNFGGTNKIYAAW---GHDEQILEAECKA 113

Query: 113 NFYDSYRWSWDNGNSRW 129
              +     + N  + +
Sbjct: 114 KGIEVPFNEFLNLATIY 130


>gi|314983265|gb|EFT27357.1| conserved domain protein [Propionibacterium acnes HL110PA3]
          Length = 87

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 9/79 (11%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
          VI D ET   D    R  + + +  D       +  +             EA  +  I+P
Sbjct: 17 VILDTETTDLD---GRIIEISII--DAA---TGTVLMNQLINPQGAPIYAEARTVHHISP 68

Query: 66 QKALRDGVVEAEFSRRIHQ 84
                     +   R+  
Sbjct: 69 DDLATAP-TFTQVWPRLED 86


>gi|326426891|gb|EGD72461.1| hypothetical protein PTSG_11592 [Salpingoeca sp. ATCC 50818]
          Length = 978

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 14/162 (8%)

Query: 4   HFV-IYDYETFGRDVALD------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
            F+ + D+E        D         +F  V +D   ++I   + F+C+P  + +  P 
Sbjct: 33  TFICVVDFEAT---CEEDDANFPHEIIEFPLVIIDVHRKEIVEKQQFYCRPVFNPILSPF 89

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN-NIRFDDYYSRNIFYRNFY 115
              +TGI  +              ++        +   G+   +  D  +    F++  +
Sbjct: 90  CTQLTGIKQESVDSA-AEFPHVLDQVMAILDKYRSHDAGHKLLLASDGPWDFRNFFQ--W 146

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
                S          LD+ +A  A      +   +     S
Sbjct: 147 QCRASSVPAPALMHQWLDIRKAFRACRGGVKRRGDQLLNMLS 188


>gi|188585233|ref|YP_001916778.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349920|gb|ACB84190.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 170

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 26/157 (16%)

Query: 32  RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT 91
              E IE    ++ +P   Y   P  V+I GI P+    +    +E  R I  +      
Sbjct: 2   EAGEIIEKQH-WYIRPKPFY-FHPYNVYIHGIKPEDVRDEP-DFSEIWREISTYLENN-- 56

Query: 92  CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151
            ++  +N  FD    R+                     DL D+    + +         +
Sbjct: 57  -LVVAHNASFDISVLRH-------------------VLDLYDLDYPQFDYLCTKKLAEKQ 96

Query: 152 DDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
                 + L+ +A    ++    HDA  D YA   + 
Sbjct: 97  WPHLDKYGLKSIAKFLDVKF-KHHDAMEDAYACAQIA 132


>gi|77163872|ref|YP_342397.1| oligoribonuclease [Nitrosococcus oceani ATCC 19707]
 gi|76882186|gb|ABA56867.1| Exonuclease [Nitrosococcus oceani ATCC 19707]
          Length = 183

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
           +++ +  D E  G +   D   + A V  D Q   IE   V      D  L   D     
Sbjct: 5   SSNLIWLDLEMSGLNTIQDVILEIATVVTDSQLNIIEEGPVIAVHQKDIILDNMDEWNTR 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
               +   ++     + EA   +R  +F +     N+  +  N+I  D  +      +  
Sbjct: 65  QHNKSGLVERVRHSLISEAAAEQRTLEFLNRHTPANSSPMCGNSICQDRRFLARYMPKLE 124

Query: 115 YDSYRW 120
              +  
Sbjct: 125 AHFHYR 130


>gi|54298969|ref|YP_125338.1| ribonuclease T [Legionella pneumophila str. Paris]
 gi|53752754|emb|CAH14189.1| ribonuclease T [Legionella pneumophila str. Paris]
          Length = 207

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 56/198 (28%), Gaps = 27/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   +   V +D   + +   E  +     P      D +++    
Sbjct: 22  VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAELDQKSLAFNQ 81

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P +    A+ +        + IH           ++  +N  FD  + +    R    
Sbjct: 82  IDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           S   ++                     D         G T       A     +   AH 
Sbjct: 142 SPFHAFT------------------CFDTATLAGLIFGETVLAKAVQAAGLHFDSQEAHS 183

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L  L+  K
Sbjct: 184 AIYDAEKTADLFCLMINK 201


>gi|314923751|gb|EFS87582.1| exonuclease [Propionibacterium acnes HL001PA1]
 gi|314966126|gb|EFT10225.1| exonuclease [Propionibacterium acnes HL082PA2]
 gi|314982038|gb|EFT26131.1| exonuclease [Propionibacterium acnes HL110PA3]
 gi|315090803|gb|EFT62779.1| exonuclease [Propionibacterium acnes HL110PA4]
 gi|315095017|gb|EFT66993.1| exonuclease [Propionibacterium acnes HL060PA1]
 gi|315104354|gb|EFT76330.1| exonuclease [Propionibacterium acnes HL050PA2]
 gi|327328205|gb|EGE69974.1| oligoribonuclease [Propionibacterium acnes HL103PA1]
          Length = 202

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 15/44 (34%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
           V  D E  G D+A D   + A +  D Q            KP 
Sbjct: 2  LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPE 45


>gi|328791793|ref|XP_624063.2| PREDICTED: probable oligoribonuclease-like [Apis mellifera]
          Length = 144

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPA 48
           V  D E  G  +  D   + A +  D     + E   +   +P 
Sbjct: 9  IVWIDTELTGLQIETDTILEIACLITDEDLNIVSEEFNIVINQPD 53


>gi|307942306|ref|ZP_07657657.1| putative exonuclease RNase T and DNA polymerase III [Roseibium sp.
           TrichSKD4]
 gi|307774592|gb|EFO33802.1| putative exonuclease RNase T and DNA polymerase III [Roseibium sp.
           TrichSKD4]
          Length = 195

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 38/155 (24%), Gaps = 12/155 (7%)

Query: 9   DYETFGR-------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           D  T G        D    R  QF+GV            + +  +  +D      A  + 
Sbjct: 7   DLATTGLPRGRNINDPDYPRMVQFSGVLFTTDGTVHGRAQDYIQQ--EDKRTSKSAENVH 64

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT  K+   G+ EA                I+    + FD    R    R   D     
Sbjct: 65  GITDTKSRTLGIPEAIAVAWFTNRLKASE--IVTGWALPFDLDIIRAALIRMNKDPLALI 122

Query: 122 WDNGNSR-WDLLDVMRAIYAFSPDGIQWPSRDDGA 155
                      L               WP   +  
Sbjct: 123 RPGLIKVDLQELMTPIMGKQAEDGSHMWPKLSESY 157


>gi|241686335|ref|XP_002411687.1| exonuclease, putative [Ixodes scapularis]
 gi|215504479|gb|EEC13973.1| exonuclease, putative [Ixodes scapularis]
          Length = 337

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 55/196 (28%), Gaps = 22/196 (11%)

Query: 5   FVIYDYETFGR----DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           F++ D+E                +F  ++V+ +  ++EST   + +P            +
Sbjct: 106 FLVLDFEATCSREKPPPHPQEIIEFPVLKVNGRSFQVESTFHQYVQPRVHRELSSFCTEL 165

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNT--------CIIGYNNIRFDDYY-SRNIFY 111
           TGI             E   + HQ+                + + +        S+  ++
Sbjct: 166 TGIIQDMVDEQP-FFEEVLEKFHQWMCSEGLLGPPEKRVAFVTFGDWDLQKMLPSQCSYF 224

Query: 112 RNFYDSYRWSWDNGNSRW----DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL-- 165
           +     Y  SW N    +                     Q      G  S  + ++ +  
Sbjct: 225 KIPVPEYLTSWINLKKAFVEATGHWPKTLPETLEYCRLEQVGRHHSGIGSHDMPEVCILR 284

Query: 166 -ANGIEHVNAHDAKAD 180
                 H   HD+  D
Sbjct: 285 VDLDYPHEQ-HDSHVD 299


>gi|117621372|ref|YP_857935.1| oligoribonuclease [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|166215748|sp|A0KNT4|ORN_AERHH RecName: Full=Oligoribonuclease
 gi|117562779|gb|ABK39727.1| oligoribonuclease [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 181

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 7/115 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            + V  D E  G D   +   + A +  D+    +    V     +D+ L   +   +  
Sbjct: 6   QNLVWIDMEMTGLDPEQNVVLEIATIVTDKDLNVLAEGPVIAIHQSDEELAKMDDWNVNT 65

Query: 63  ITP----QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF 110
            T      +       EA+       F        T  +  N+I  D  +     
Sbjct: 66  HTNSGLVARVKASQHDEAQAVAETLDFIRQWVPERTSPLCGNSIGQDRRFMVKHM 120


>gi|212716446|ref|ZP_03324574.1| hypothetical protein BIFCAT_01370 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212660699|gb|EEB21274.1| hypothetical protein BIFCAT_01370 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 216

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           +  D E  G D+  D   + + V  D     ++    F  KP+D
Sbjct: 17 LIWIDCEMTGLDIFHDELCEISVVPTDFDLNVLDEGIDFVIKPSD 61


>gi|54295804|ref|YP_128219.1| ribonuclease T [Legionella pneumophila str. Lens]
 gi|53755636|emb|CAH17138.1| ribonuclease T [Legionella pneumophila str. Lens]
 gi|307611851|emb|CBX01565.1| ribonuclease T [Legionella pneumophila 130b]
          Length = 207

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 56/198 (28%), Gaps = 27/198 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   +   V +D   + +   E  +     P      D +++    
Sbjct: 22  VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAELDQKSLEFNQ 81

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P +    A+ +        + IH           ++  +N  FD  + +    R    
Sbjct: 82  IDPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           S   ++                     D         G T       A     +   AH 
Sbjct: 142 SPFHAFT------------------CFDTATLAGLIFGETVLAKAVQAAGLHFDSQEAHS 183

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L  L+  K
Sbjct: 184 AIYDAEKTADLFCLMINK 201


>gi|256022685|ref|ZP_05436550.1| ribonuclease T [Escherichia sp. 4_1_40B]
          Length = 83

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 6  VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
          V+ D ET G +   D   + A +  ++D Q   + ++T  F  +P       PEA+   G
Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79

Query: 63 ITP 65
          I P
Sbjct: 80 IDP 82


>gi|304396220|ref|ZP_07378102.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB]
 gi|304356589|gb|EFM20954.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB]
          Length = 223

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 67/274 (24%), Gaps = 63/274 (22%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDPE 56
           M   F + D ET G         Q   V V          +            D     +
Sbjct: 1   MM--FRVIDTETCGL--------QGGVVEVASVDVVDGRIVNPMSDLT---LPDRPISRQ 47

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           A+ +  IT         +E E   R +       +     +N  FD         R    
Sbjct: 48  AMAVHRITEAMVAGKPTIE-EAIPRYY------GSAFYVAHNASFD---------RRMLP 91

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                W         +  M+           WP    G  + +            ++AH 
Sbjct: 92  EMYGEW---------ICTMQLARQL------WPGIKYGNQALRHSLKLDVTPPAELHAHR 136

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
           A  D Y T     LIR  +   +             +  DI                +  
Sbjct: 137 ALYDCYVTA--ALLIRIMETSGWSASEMIVRSQPAAQRDDILPF------------GKYR 182

Query: 237 TALIAPVAW-HPRYKDSVIGCNLSGDMRVFQDLD 269
              IA +A   P Y   V+         + Q L+
Sbjct: 183 GQAIAVIARKDPGYLKWVLNNVSDLRPPLRQALN 216


>gi|297625994|ref|YP_003687757.1| Oligoribonuclease [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921759|emb|CBL56317.1| Oligoribonuclease [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 223

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 8/109 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFITG 62
            V  D E  G D+A D   + A +  D +            +P+   L         +  
Sbjct: 2   LVWIDCEMTGLDLANDELIEVACLVTDGELNVQGDGIDVLVQPSKHALDHMGEFVTEMHT 61

Query: 63  ITPQKALRDGV------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
            +   A    V       E +    I ++        +  N I  D  +
Sbjct: 62  KSGLLAELKNVKTTMREAEEQVLAYIKKYVPTERKAPLAGNTIGTDRTF 110


>gi|119585972|gb|EAW65568.1| three prime histone mRNA exonuclease 1, isoform CRA_a [Homo
           sapiens]
          Length = 288

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 69  ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 128

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++  +  +         + +   +         +    R 
Sbjct: 129 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 187

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 188 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDD 237


>gi|326925262|ref|XP_003208837.1| PREDICTED: ERI1 exoribonuclease 3-like [Meleagris gallopavo]
          Length = 484

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 50/176 (28%), Gaps = 15/176 (8%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 165 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTG 224

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +   R+ ++ +                  S    +    D      
Sbjct: 225 IIQGMVDGQP-SLQQVLERVDEWMAKEG-----------LLDPSVKSIFVTCGDWDLKVM 272

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDA 177
             G  ++  L V      +      +           L D+     ++H    H  
Sbjct: 273 LPGQCQYLGLPVADYFKQWINLKKAYSFAMGSWPKNGLLDMNKGLNLQHIGRPHSG 328


>gi|152967659|ref|YP_001363443.1| oligoribonuclease [Kineococcus radiotolerans SRS30216]
 gi|151362176|gb|ABS05179.1| Exonuclease RNase T and DNA polymerase III [Kineococcus
          radiotolerans SRS30216]
          Length = 206

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
          T+  V  D E  G  +  D   + A +  D     +        KP  + L D
Sbjct: 7  TDRIVWIDCEMTGLSLTEDALVEVAVLVTDADLNVLGDGVDVVIKPPAESLVD 59


>gi|291233033|ref|XP_002736458.1| PREDICTED: Eri3 protein-like [Saccoglossus kowalevskii]
          Length = 216

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 53/179 (29%), Gaps = 15/179 (8%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           F++ D+E        +      +   +++  +  + E+    + +P  + +  P    +T
Sbjct: 23  FLVLDFEATCEKSTKIYPQEIIEIPVLKIHAKTFETEAIFHTYVQPTANPILTPFCTELT 82

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT         +E E  + + ++                         +    D    +
Sbjct: 83  GITQDVVCGKPKIE-EALKMLDKWMLDQG-----------LLDGETAFVFVTCGDWDLKT 130

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              G  ++  L +     ++      +           L ++     +EH   H +  D
Sbjct: 131 MLPGQCKYFRLPIANYFKSWINIKRPFSEVVRPNIRVDLMEMLQMLDLEHHGRHHSGID 189


>gi|213409417|ref|XP_002175479.1| 3'-5' exonuclease eri-1 [Schizosaccharomyces japonicus yFS275]
 gi|212003526|gb|EEB09186.1| 3'-5' exonuclease eri-1 [Schizosaccharomyces japonicus yFS275]
          Length = 311

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 68/224 (30%), Gaps = 24/224 (10%)

Query: 1   MTNHFV-IYDYETF-----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLP 53
           M   ++ + D E       G     +   +F  +  D  Q   I+     + KP      
Sbjct: 60  MKLRYLLVVDVEATCEEGCGFSYM-NEIIEFPCLLYDLEQKRIIDEFHT-YVKPRRIPTL 117

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +T I PQK + +          +H+F S  +  +I   N      +SR      
Sbjct: 118 SNYCKELTKI-PQKLIDNAPPFKTVLDLLHEFLSKHDDKLIPPVNGPNTFEWSRLPKTAY 176

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ--------------WPSRDDGATSFK 159
            + S +      +  WD+   +   +A + +                 +      + S  
Sbjct: 177 HFRSQKNWAWACDGPWDMASFVAKEFATTEENNPPSWINGPFVDVRSLFSDAFRVSKSNI 236

Query: 160 LQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLY 203
              L+  N       H+   D    + ++  ++++  +     +
Sbjct: 237 NAMLSRWNLTFEGQEHNGLDDARNLVRVIQHMQQEDIEFEHNRW 280


>gi|242078557|ref|XP_002444047.1| hypothetical protein SORBIDRAFT_07g006360 [Sorghum bicolor]
 gi|241940397|gb|EES13542.1| hypothetical protein SORBIDRAFT_07g006360 [Sorghum bicolor]
          Length = 287

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 21/194 (10%)

Query: 1   MTNHFVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPE 56
           M + FV+ D+E     G  +      +F  V VD      + +    + +P         
Sbjct: 1   MFDFFVVIDFEATCQEGSVIYPQEIIEFPSVLVDGATGRTLSTFRT-YVRPRHHPRLTDF 59

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TGIT       GV  AE       +       +               +    + D
Sbjct: 60  CRDLTGITQGDV-DAGVSLAEALEMHDHWLEAHGAKL-------------GKLAVVTWGD 105

Query: 117 SYRWSWDNGNSRWDLLDVMRAI-YAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNA 174
               +   G  R+  ++      +  +       +   G   F LQD     G+      
Sbjct: 106 WDCRTMLEGECRFKGIEKPHYFDHWINLRLPFSAAFGVGNVRFTLQDAIRKAGLQWEGRL 165

Query: 175 HDAKADVYATLALV 188
           H    D   T  L+
Sbjct: 166 HCGLDDALNTAHLL 179


>gi|160893421|ref|ZP_02074206.1| hypothetical protein CLOL250_00970 [Clostridium sp. L2-50]
 gi|156864816|gb|EDO58247.1| hypothetical protein CLOL250_00970 [Clostridium sp. L2-50]
          Length = 319

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 52/208 (25%), Gaps = 29/208 (13%)

Query: 4   HFVIYDYETF-------GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           ++++ D E         G    +     +   V+VD+ +  I+       KP        
Sbjct: 2   NYIVMDLEWNQSYSGHIGEHPRMPFEIIEIGAVKVDKNYRIIDEYSSLI-KPRIYKKLHS 60

Query: 56  EA-VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           +    +     +  L  G    E      +F        I       D    +      +
Sbjct: 61  KIRTILN--YDETDLAKGRGFKEVCT---EFLEWCGKDYIFCTWGPMDLTELQTNMAFYY 115

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            D         N +    +++                     S   + +A  N  E    
Sbjct: 116 MDKLPRPLKFLNLQQIYANMV--------------DPTGSTVSKLEKAVADFNIPEDEPF 161

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYL 202
           H A  D   T  ++  +  +  K     
Sbjct: 162 HSAVNDARYTALVLKEMHPRNLKDLYSF 189


>gi|307721509|ref|YP_003892649.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979602|gb|ADN09637.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
          Length = 233

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 10/110 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D ET G +   D     A +  D+         V +    +     P A  I  IT
Sbjct: 2   LIFTDIETTGLEAD-DVMCGIALLSEDK---------VMYELLNEGKKIPPLASSIHHIT 51

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +      +          +  + P   +I +N     +  +    +   
Sbjct: 52  NEMIQDKKLFIQSEVHDFLEQNNNPKNTLIAHNIKFDLEKLAAAGLHWQG 101


>gi|229018743|ref|ZP_04175593.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1273]
 gi|228742549|gb|EEL92699.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1273]
          Length = 273

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 58/235 (24%), Gaps = 22/235 (9%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V++D    + I                      +TGIT +  +       +F 
Sbjct: 18  EIVDIGAVKIDASTMKIIGEFSEL---VKPSAPLTRHTTKLTGITKKDLIG----VEKFP 70

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           + I +F        I  +  + D  +  +    +  +          SR+D+   +   Y
Sbjct: 71  QIIEKFIKFIGEDFIFISWGKEDYRFLSHDCTLHGVECPCME---KESRFDVQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
                        +   S +     L    E    H A AD   T  +      +   + 
Sbjct: 128 ---------EELFEHTPSLQFAVEQLDLTWE-GRQHRAFADAENTANIFLKAYSE-RDIN 176

Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254
           +    +     ++     +     +         +S        A+        I
Sbjct: 177 KRYKRHGELELVKNGKLTEKAKKKMRKWAFKEMKKSAERPFVWGAFESSDTWESI 231


>gi|148361305|ref|YP_001252512.1| ribonuclease T [Legionella pneumophila str. Corby]
 gi|296108645|ref|YP_003620346.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy]
 gi|148283078|gb|ABQ57166.1| ribonuclease T [Legionella pneumophila str. Corby]
 gi|295650547|gb|ADG26394.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy]
          Length = 207

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 9/127 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   +   V +D   + +   E  +     P      D +++    
Sbjct: 22  VVVDVETAGIDPQKNALLEMCIVLLDMDEQGLLKKESSYFEHILPFPGAELDQKSLEFNQ 81

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I P +    A+ + +      + IH           ++  +N  FD  + +    R    
Sbjct: 82  IDPYQPLRFAVDEQIALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIK 141

Query: 117 SYRWSWD 123
           S   ++ 
Sbjct: 142 SPFHAFT 148


>gi|86358436|ref|YP_470328.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli CFN 42]
 gi|86282538|gb|ABC91601.1| probable DNA polymerase III, epsilon subunit protein [Rhizobium
           etli CFN 42]
          Length = 196

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 29/170 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                I D+ET   +             ++    ++   E    +P  D       + I 
Sbjct: 1   MKTIAI-DFET--ANEQRGSACSVGLAWIEEG--RVTRVEERLIRPR-DMRFSGMNIAIH 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+          E     H+  S      +  +N  FD        +R   D YR S
Sbjct: 55  GIRPEHVEDAPE-FPEVMDEFHEDIS---GATMIAHNAAFDFSV-----WRASLDLYRQS 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           +            +  + +       WP       S +L  +A   G+  
Sbjct: 106 Y----------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRF 141


>gi|254784370|ref|YP_003071798.1| exonuclease [Teredinibacter turnerae T7901]
 gi|237683955|gb|ACR11219.1| putative exonuclease [Teredinibacter turnerae T7901]
          Length = 235

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 49/210 (23%), Gaps = 35/210 (16%)

Query: 1   MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP---- 55
           M  + F++ D E  G D    +      V +        ++           L       
Sbjct: 38  MRENRFLVVDCEMSGLDANRSQLLSIGWVVI-ENARITHAS-------GKHLLIHADRGA 89

Query: 56  -EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            ++  I G+               +  I          ++ +++   D  + +   Y NF
Sbjct: 90  GDSTRIHGLHDATIAGA----KSAAAAITLLAKQVPGSVLVFHHAPLDLRFLQQTAYENF 145

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVN 173
                + + +                      +        +  +L       G      
Sbjct: 146 RCPLLFGYVDTMLI----------------EQRRLQLQGAESGLRLAQCRERYGLPPISG 189

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLY 203
            H+A  D  AT  L+               
Sbjct: 190 HHNAMTDARATAELLLAQTSYLGGAGRVSL 219


>gi|210635237|ref|ZP_03298449.1| hypothetical protein COLSTE_02380 [Collinsella stercoris DSM 13279]
 gi|210158455|gb|EEA89426.1| hypothetical protein COLSTE_02380 [Collinsella stercoris DSM 13279]
          Length = 321

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 50/196 (25%), Gaps = 16/196 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDY----LPDPEAVFITG 62
            D ET GR              +D + + +      F+C   + Y    +P  +   I  
Sbjct: 135 IDIETTGRAPERGYIINVGWELMDLKSDAVPRDPRAFYCGIPEMYRETGVPLAD---IHH 191

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             +  +   +   +     I  +N  F+D      ++      Y  + 
Sbjct: 192 IQWSDLEGK-TPFRQDVKLQKELLKLMKRYPIMAHNAAFED-----SWFMLHLPGYAEAR 245

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             G  +  ++D      +   +    P     A+             +    H    D  
Sbjct: 246 RAG--KIIVIDSRHICRSIDGEVRALPRESAPASLQNWARRRGTLAADENELHLGLDDTD 303

Query: 183 ATLALVWLIREKKPKL 198
             L  V      K   
Sbjct: 304 LMLRTVQAEFNGKNMF 319


>gi|145588884|ref|YP_001155481.1| exonuclease, RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047290|gb|ABP33917.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 218

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 60/218 (27%), Gaps = 37/218 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +I+D E    D       + A +     +  ++ +   +  +          A+    I 
Sbjct: 5   IIFDVEAT--DKNNAVIIEAASLDVTSLKPFEVGNP--WVQRYNPGKPISLGALATHHIL 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++ +               F     T  +  +NI FD                      
Sbjct: 61  DEELVNCPAS--------SSFRLPAGTKYLIGHNIDFDWVAIG---------------SP 97

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              R   L + R+++       Q               L         NAH A ADV+  
Sbjct: 98  EVKRICTLALARSLWPDLDSHTQSALLYYFERDTARDQLR--------NAHSALADVWVC 149

Query: 185 -LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
              +  +I +  P   + L++   K ++  ++      
Sbjct: 150 SKIVAQIINQLHPISLDALWEMSEKARIPTVMPYGKHK 187


>gi|150390277|ref|YP_001320326.1| exonuclease, RNase T and DNA polymerase III [Alkaliphilus
           metalliredigens QYMF]
 gi|149950139|gb|ABR48667.1| Exonuclease, RNase T and DNA polymerase III [Alkaliphilus
           metalliredigens QYMF]
          Length = 192

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 27/150 (18%)

Query: 4   HFVIYDYETFGRDVALD-------------------RPAQFAGVRVDRQWEKIESTEVFF 44
            ++I+D+E    + A                        +   V+ + ++E  E+ ++F 
Sbjct: 2   KYIIFDFE---FNSAFRIDRKTKRLMKGNTNPLCPQEIIEIGAVKTNDEFEIEETFQMF- 57

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN---NIRF 101
            +P       P+    T IT +  L  G         +  + +     +  +        
Sbjct: 58  VRPVLYTKLHPKVKKKTQITNEDLLG-GKSLNSSITALQHWINEDEFIMCSWGKDDINEL 116

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131
               S      N+ D Y        +  DL
Sbjct: 117 KRNCSFFEIQTNWIDKYCDIQKMCMNYLDL 146


>gi|255505894|ref|ZP_05348724.3| exonuclease family protein [Bryantella formatexigens DSM 14469]
 gi|255265267|gb|EET58472.1| exonuclease family protein [Bryantella formatexigens DSM 14469]
          Length = 318

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/336 (10%), Positives = 94/336 (27%), Gaps = 37/336 (11%)

Query: 4   HFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           +++++D E      G++  +        +   ++++ +  + +     + +P        
Sbjct: 7   NYIVFDLEWNQCPDGKEHEMRELPFEILEIGAIKLNSEKIETDRFHE-YIRPTVYTRMHN 65

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           +   I  I  +          +F   + + F     C    +   +          RN  
Sbjct: 66  KTQEIVHIRQEVLENA-----DFFPAVLERFREW--CGPDAHYCTW-GSLDLLELQRNIR 117

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NA 174
                 +     ++  +  + ++             +DG +   L+       IE     
Sbjct: 118 YHKLTGFFPFPLKFYDIQKIFSLAF-----------EDGKSRRTLEHAVDMLNIEKNVPF 166

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           H+A +D + T A++  + +     +  +  +R   +       + +         + + +
Sbjct: 167 HEALSDAWYTAAVMRFLPDDTLHSYYSIDYFRIPQR-----RSEEIYETFQNYSKYVSKK 221

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
             +   A      R     +    +     +    S         S+ E  G +   I+ 
Sbjct: 222 FPSRTAAMKDRVVRSTTCYLCGKKAVKKIPWFTGGSKNYR---CLSYCEEHGWLKGKIRI 278

Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTL 330
                      +   K    ER      R  E+   
Sbjct: 279 KKAEDGKGCFCVKTLKLVSEERAREIIARYEEHAEK 314


>gi|145579953|pdb|2O4I|A Chain A, Structure Of Trex1 In Complex With Dna
 gi|145579954|pdb|2O4I|B Chain B, Structure Of Trex1 In Complex With Dna
          Length = 247

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 32/187 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               +  D E  G   +     +   + V R    +E+T +                   
Sbjct: 13  MQTLIFLDLEATGLPSSRPEVTELCLLAVHR--RALENTSISQGHPPPVPRPPRVVDKLS 70

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIR 100
              A      P A  ITG++  +    G    +   +  +  F        C++ +N  R
Sbjct: 71  LCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDR 130

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +    R    S      +G    D +  ++     + +    PS +    S+ L
Sbjct: 131 YDFPLLQTELARLSTPSPL----DGTFCVDSIAALK-----ALEQASSPSGNGSRKSYSL 181

Query: 161 QDLALAN 167
             +    
Sbjct: 182 GSIYTRL 188


>gi|219668974|ref|YP_002459409.1| sporulation inhibitor KapD [Desulfitobacterium hafniense DCB-2]
 gi|219539234|gb|ACL20973.1| Exonuclease RNase T and DNA polymerase III [Desulfitobacterium
           hafniense DCB-2]
          Length = 209

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 5   FVIYDYETF-----GRD-VALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEA 57
           F++ D+E       G+         +     +D   +  ++ T   F KP        E+
Sbjct: 3   FLVVDFEFSVPQSYGKPRAWFPEIIEVGATVLDSNGKLALDKTFNAFVKPRFWPRLAEES 62

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             ITGI  +     G++  E  + + Q  + P   ++ + +       +    Y   Y  
Sbjct: 63  YGITGIRQEDV-DQGILLEEAIQHL-QKLAHPEAYVVAWGDADRKILGNVCEKYGLKYPF 120

Query: 118 YRWSWDN 124
              ++ +
Sbjct: 121 VWENYID 127


>gi|268578589|ref|XP_002644277.1| C. briggsae CBR-CRN-4 protein [Caenorhabditis briggsae]
 gi|187027645|emb|CAP32715.1| CBR-CRN-4 protein [Caenorhabditis briggsae AF16]
          Length = 298

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 83/288 (28%), Gaps = 38/288 (13%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEA 57
           +H +I D+ET       D      QF+ V +D + + +     F         P      
Sbjct: 9   DHLLILDFETTSGGKNRDYPTEIIQFSVVPLDVKAKTMLEGIAFNKFVRPVINPTLSEHC 68

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPN------TCIIGYNNIRFDDYYSRNIFY 111
             +TGI  +             ++  ++             +       +     +    
Sbjct: 69  AELTGIKQESLNSAD-TFLVVYKQFLEWLQKNGFQERHFAIVSDSRQDMWRIAQYQFRLV 127

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R    S    W N    +D             DG++   ++    +  ++ ++   GIE 
Sbjct: 128 RETMPSMFRQWINIKRTFD-------------DGLEDGQKEKLVGTTNIEKMSNYLGIEL 174

Query: 172 -VNAHDAKADVYATLALV-WLIREKKPKLFEYLYDYR---NKNQLRKLIDIQNMTPLVHV 226
              AHDA +D     A+   ++    P     +        K  +   +        +  
Sbjct: 175 SGKAHDALSDCLNIAAITHKILEIGCPVTINEMLCCSAIWRKKPIDMTLHANWKMDFLLA 234

Query: 227 SGMFG--------ASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQ 266
             +F           R+ TA +  V  + +   +V G       R F 
Sbjct: 235 HNIFHLVLPLTIKVVRNYTANMYGVCPYCKKPPTVCGAVHKQPPREFY 282


>gi|225350877|ref|ZP_03741900.1| hypothetical protein BIFPSEUDO_02451 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|225158333|gb|EEG71575.1| hypothetical protein BIFPSEUDO_02451 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 216

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
           +  D E  G D+  D   + + V  D     ++    F  KP++
Sbjct: 17 LIWIDCEMTGLDIFHDELCEISVVPTDFDLNVLDEGIDFVIKPSN 61


>gi|268577613|ref|XP_002643789.1| Hypothetical protein CBG02000 [Caenorhabditis briggsae]
 gi|187037741|emb|CAP23178.1| hypothetical protein CBG_02000 [Caenorhabditis briggsae AF16]
          Length = 299

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 57/197 (28%), Gaps = 12/197 (6%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEA 57
           ++ +I D+E        D      QF+   ++ + + I     F  + +P  +       
Sbjct: 10  DNLLILDFEGTCEKDDHDYPSEIIQFSVCVLNTRDKIIREDVSFNKYVRPVINPKLTDFC 69

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGI  Q  + +     E   +   +    +               SR   +R     
Sbjct: 70  AELTGI-DQDTIDNARTFPEVYNQFCAWLKEHD----FQEKRFAIVCDSRQDMWRLAQYQ 124

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           +  +     + +     +   Y    D      +D    S   +  A  N      AH+A
Sbjct: 125 FLLNKQPFPTIFRQWVNLSLYY--RQDLRMAQQQDAVHQSLIERMSAFYNIPNEGQAHNA 182

Query: 178 KADVYATLALVWLIREK 194
             D      +   I + 
Sbjct: 183 MDDCSFLAKVTKRILDN 199


>gi|227495721|ref|ZP_03926032.1| oligoribonuclease [Actinomyces urogenitalis DSM 15434]
 gi|226834741|gb|EEH67124.1| oligoribonuclease [Actinomyces urogenitalis DSM 15434]
          Length = 206

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
          ++  V  D E  G D+  D   + A V  D + + +        KP 
Sbjct: 4  SDPLVWIDCEMTGLDLGKDALIEVAVVVTDYELKPLGEGIDVLIKPP 50


>gi|225556491|gb|EEH04779.1| oligoribonuclease [Ajellomyces capsulatus G186AR]
          Length = 189

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 28/125 (22%), Gaps = 9/125 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE---------KIESTEVFFCKPADDYLPDP 55
            V  D E  G +   D+  Q      D              I   E       D  +   
Sbjct: 10  LVWIDCEMTGLNPRTDKILQICCFITDADLNLLEPTGFEAVIHHPESVLDNMNDWCIKTH 69

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T                    I +      T ++  N++  D  +     Y    
Sbjct: 70  GQSGLTAAVSASTTTPTAAAEGLLAYIKKHVPRERTGLLAGNSVHADKEFLACKPYSMIL 129

Query: 116 DSYRW 120
           +   +
Sbjct: 130 EWLHY 134


>gi|187933597|ref|YP_001884755.1| exonuclease family protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187721750|gb|ACD22971.1| exonuclease family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 301

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 19/175 (10%)

Query: 19  LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78
            +   +   ++VD+  +++      + KP+   + +P    IT IT     ++G+   + 
Sbjct: 36  ENEIIEIGVIKVDKYMKQVAEMRE-YIKPSIFPVMNPVVTNITKITMDTLEKEGITFKQG 94

Query: 79  SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138
             ++       +  +I             N  Y N+ D                      
Sbjct: 95  MDKLKGMIKEGD--VICSWAKDDVAEIIINSNYHNYTDLSWIK----------------E 136

Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE 193
           Y    +          A   K     L   +++   HDA  D   TL +   I  
Sbjct: 137 YLDLQEYSTKILGHKKAMGLKSALDELKIKVDNTKLHDALNDAEYTLLVFKHIYN 191


>gi|301603560|ref|XP_002931486.1| PREDICTED: ERI1 exoribonuclease 3 [Xenopus (Silurana) tropicalis]
          Length = 338

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           F++ D+E       +      +F  ++++ +  +IEST   + +P       P    +TG
Sbjct: 130 FLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHTYVQPVVHPQLTPFCTELTG 189

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           I            ++   R+ ++ +   
Sbjct: 190 IIQDMVDGQP-TLSQVLERVDEWMAKEG 216


>gi|229175172|ref|ZP_04302688.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3]
 gi|228608308|gb|EEK65614.1| DNA polymerase III subunit epsilon [Bacillus cereus MM3]
          Length = 280

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 46/165 (27%), Gaps = 26/165 (15%)

Query: 32  RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT 91
              E I+     +     +   D   + I GITP       +   EF     + F     
Sbjct: 5   ENGEIID---TLYELINPEEDFDYYNIAIHGITPSDVKDA-LTFPEFYEAYKKRFENK-- 58

Query: 92  CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151
            ++  + + FD Y  R+   R    S                                  
Sbjct: 59  -LLVAHYLPFDGYALRDSLRRYELPSVYN-------------------NLLCTYQLSKKL 98

Query: 152 DDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196
             G  S+ L+ L     IE  N H+A  D  A   L+  +  K  
Sbjct: 99  ITGEKSYTLKYLCKHFSIELNNHHNALEDARACAQLMLQLSHKYD 143


>gi|154271267|ref|XP_001536487.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150409710|gb|EDN05154.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 189

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 28/125 (22%), Gaps = 9/125 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE---------KIESTEVFFCKPADDYLPDP 55
            V  D E  G +   D+  Q      D              I   E       D  +   
Sbjct: 10  LVWIDCEMTGLNPRTDKILQICCFITDADLNLLEPTGFEAVIHHPESVLDNMNDWCIKTH 69

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T                    I +      T ++  N++  D  +     Y    
Sbjct: 70  GQSGLTAAVSASTTTPTAAAEGLLAYIKKHVPRERTGLLAGNSVHADKEFLACKPYSMIL 129

Query: 116 DSYRW 120
           +   +
Sbjct: 130 EWLHY 134


>gi|188579669|ref|YP_001923114.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
 gi|179343167|gb|ACB78579.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 297

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 44/183 (24%), Gaps = 29/183 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D+ET   +   D         +      +   E    +P       P  + I GI P
Sbjct: 4   VAIDFET--ANERRDSACAVGLAWI-EGGRVVRR-ETRLIRP-PQMRFSPGNIRIHGILP 58

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      E         +     ++  +N  FD                   W   
Sbjct: 59  ADVRDAP-TFPEVFAEFRPDLT---GALLLAHNAGFDMGVLAASLAA---------WGEP 105

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                    ++      PD               L  +A   GI   + HDA  D +A  
Sbjct: 106 VPDMAGHCTLQIARRIFPD----------PAGHGLAKVAGRLGIRFEH-HDAGEDAFACA 154

Query: 186 ALV 188
            + 
Sbjct: 155 EIA 157


>gi|296137636|ref|YP_003644877.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
           K12]
 gi|295797758|gb|ADG32547.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
           K12]
          Length = 179

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 10/123 (8%)

Query: 1   MTNHFVIYDYETF-----GRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           MT   ++ D E       G   A D    +   V    +   +++ +          L  
Sbjct: 1   MTPVVLVIDLEATCDDADGL-PASDMEIIEIGAVWATVEGSVLDTFQALVRPVVRPQL-T 58

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFYRN 113
           P    +T I         +     + R+  F          + +  +FD         R+
Sbjct: 59  PFCRQLTNIQQADVDGAEL-FPAVAARLASFAQRHQAPGATWGSWGQFDAKQLARDCERH 117

Query: 114 FYD 116
             +
Sbjct: 118 GIE 120


>gi|229012729|ref|ZP_04169899.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides DSM
           2048]
 gi|228748564|gb|EEL98419.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides DSM
           2048]
          Length = 273

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 53/235 (22%), Gaps = 22/235 (9%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V++D    + I                      +TGIT +  +  G    +  
Sbjct: 18  EIVDIGAVKIDVSTMKVIGEFSEL---VKPSAPLTRHTTKLTGITKKDLIGVG-NFPQII 73

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
            +  QF    +  +       +       +                 SR+D+   +   Y
Sbjct: 74  EKFIQFIGEDSIFV------SWGKEDYHFLSQDCTLYGVECPCMEKESRFDVQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
               +    PS         L              H A AD   T  +   +  +   + 
Sbjct: 128 EELFE--HTPSLQFAVDQLGLT--------WEGKQHRALADAENTANIFLKVYGE-RDIN 176

Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254
           +    +     ++     +     +         ++        A+        I
Sbjct: 177 KRYKRHGELELVKNGKLTEKAKKRMRKWVFKELRKNTERPFVWSAFESSDTWEGI 231


>gi|308235417|ref|ZP_07666154.1| oligoribonuclease [Gardnerella vaginalis ATCC 14018]
 gi|311114824|ref|YP_003986045.1| cyanuric acid amidohydrolase [Gardnerella vaginalis ATCC 14019]
 gi|310946318|gb|ADP39022.1| cyanuric acid amidohydrolase [Gardnerella vaginalis ATCC 14019]
          Length = 235

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 10/125 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFIT- 61
            +  D E  G D+  D   + + V  D   + ++       KP+D  +         +  
Sbjct: 17  LIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKPSDAAVAHMNDFVRNMHT 76

Query: 62  --GITPQKALRDGVVEAEFSRRIHQ----FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
             G+  +   ++G+   E  +++ +    F        +  N++  D  +          
Sbjct: 77  SSGLVDE-CNKNGLPLEEAQKQVVEYVKRFLPEHGKAHLAGNSVGSDKKFLDRYMPDLMA 135

Query: 116 DSYRW 120
           + +  
Sbjct: 136 NLHYR 140


>gi|222823839|ref|YP_002575413.1| exonuclease [Campylobacter lari RM2100]
 gi|222539061|gb|ACM64162.1| conserved hypothetical protein, putative exonuclease [Campylobacter
           lari RM2100]
          Length = 459

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 86/322 (26%), Gaps = 34/322 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           +  + ++ D ET G     D   Q + +  D     I      + KP        EA  I
Sbjct: 147 LKLNVIVIDTETTGLREWEDEILQLSII--DETGYLI---FDKYFKPK-YKSTWIEAQKI 200

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GI P        ++    +   +        IIGYN      +  R I +         
Sbjct: 201 HGIKPAFVQNKASIDNYKIQ--LEKIFNDADVIIGYNLDFDLKFIKRVIDFEKPMFCIDV 258

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                +   +   ++  +           +         L  L          AH A  D
Sbjct: 259 MKLFTSYYHEESSILPNVDCGYSYKKLTFAAWHFKNPNALNPL------NFHGAHGALED 312

Query: 181 VYATLALVWL-------------------IREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
             ATL ++                             ++       +   ++ +      
Sbjct: 313 ARATLYVLTKLEQTLSSTPNYKNFRKRLGFNRIIDLFYQDFLKKEEEELNKQKLKSDIKD 372

Query: 222 PLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSH 281
            +  +     A+  +   I+ + ++  Y    I       M+V+ + ++      L   +
Sbjct: 373 TVDKLYNEMIAALGSDVKISKIIYNS-YATFYIKNQKKWVMKVYFNENAKAQKALLNIPN 431

Query: 282 DELKGLVPVPIKEVHLNKCPIL 303
            + + +        +     I+
Sbjct: 432 SKFRKVDEKFFIRQNKKLKEII 453


>gi|242239767|ref|YP_002987948.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii
           Ech703]
 gi|242131824|gb|ACS86126.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii
           Ech703]
          Length = 181

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 31/204 (15%)

Query: 1   MTNHFVI-YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAV 58
           M++   +  D ET G    +          V         T+  + +   D L   PEAV
Sbjct: 1   MSDELYVSVDVETSGPVPGIYSLLSIGACVVSEP------TQSIYLELQPDGLKHDPEAV 54

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRN 113
            +TG+   K   +G+       ++ Q+ +           +G N               +
Sbjct: 55  AVTGLDLTKLESEGLPPQVAMLKLEQWLTQVCPAEQKVIFVGLNAPFD----------WS 104

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
           F + Y   +  G + +    +    Y     G  W          K   +        V 
Sbjct: 105 FINYYFHKYS-GMNPFGFTAIDMKAYYMGLTGCLWKET-------KSSQMTARFNPISVP 156

Query: 174 AHDAKADVYATLALVWLIREKKPK 197
           +H+A  D      L  L+  +   
Sbjct: 157 SHNALDDARFQGELFALMLAEARN 180


>gi|171317547|ref|ZP_02906736.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria
           MEX-5]
 gi|171097307|gb|EDT42153.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria
           MEX-5]
          Length = 174

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F+  D ET G               VD            F    D+++  PEA+ +TG++
Sbjct: 8   FISVDVETAGPIPGEFSMLTLGACLVDDPSR---KFSCSFRPINDNFV--PEALKVTGLS 62

Query: 65  PQKALRDGVVEAEFSRRIHQFF----SVPNTCIIGYNNIRFDDYYSRNIFYR 112
            ++  +DG+   +  +    +     +     +    N  FD  +    F+R
Sbjct: 63  LERLAKDGLSPGDAMQNFAVWIGLQCTEWELPVFVGLNAPFDWSFVNYYFHR 114


>gi|186682035|ref|YP_001865231.1| exonuclease, RNase T and DNA polymerase III [Nostoc punctiforme PCC
           73102]
 gi|186464487|gb|ACC80288.1| Exonuclease, RNase T and DNA polymerase III [Nostoc punctiforme PCC
           73102]
          Length = 187

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 6/130 (4%)

Query: 5   FVIYDYETFGRDVALD-----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           ++I D E    D            +   V ++R   +I+S    F +P            
Sbjct: 9   YLIVDLEATCCDKKTIPRHEMEIIEIGAVMLNRATWEIDSEFQQFIQPVRHPQLTDFCTK 68

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I  Q          E   R  ++       I           + ++  + NF   + 
Sbjct: 69  LTSIQQQDVDEAPK-FIEAISRFKEWICSFPNHIFCSWGNYDKKQFIQDCAFHNFAYPFT 127

Query: 120 WSWDNGNSRW 129
               N    +
Sbjct: 128 SEHINIKEEF 137


>gi|223986774|ref|ZP_03636758.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
 gi|223961261|gb|EEF65789.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
          Length = 187

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 66/216 (30%), Gaps = 41/216 (18%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIES-----TEVFFCKPADDYL-PDPEAVFIT 61
            D+ET   + +   P     V         +      ++ +  +P   Y    P  + I 
Sbjct: 6   IDFET--ANPS---PMSACAV----GLTVFDEGEMVFSDSWLIRPHPYYDAFYPSFIDIH 56

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           GITP +          F  ++++      +  ++  +N  FD     +       +    
Sbjct: 57  GITPDQVADAP-----FFPKVYEQLKPWLDGGVLCAHNAGFDMKVLASCCSLYRLELPDA 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
            +      +  + + R +Y +                 +L D+    GI+  + HDA +D
Sbjct: 112 PY------FCTVKLSRKVYPYLKH-------------HRLNDVCDYMGIQLDH-HDAGSD 151

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
                 +V                   +  + K++D
Sbjct: 152 ARGCALIVANTMNLMQIYEPLELAQTCQIPVNKILD 187


>gi|296420326|ref|XP_002839726.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635920|emb|CAZ83917.1| unnamed protein product [Tuber melanosporum]
          Length = 188

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           V  D E  G D   D   Q      D +   ++ 
Sbjct: 10 LVWIDCEMTGLDPNEDVILQICCYITDHELNLLDE 44


>gi|170590708|ref|XP_001900113.1| exonuclease family protein [Brugia malayi]
 gi|158592263|gb|EDP30863.1| exonuclease family protein [Brugia malayi]
          Length = 399

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 57/207 (27%), Gaps = 10/207 (4%)

Query: 7   IYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           + D+E               +F  V VD + ++I      + +P  +          TGI
Sbjct: 148 VIDFECTCEADLYDYNHEIIEFPAVLVDVRKKEIVDVFHSYVRPLANPQLSEFCSAFTGI 207

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T +   +  +   +       +  +     +G N++R+            F+        
Sbjct: 208 TQEMIDKA-LPFIDVLDSFRTWMQLHR---LGQNDMRYAFVTDGPWDIAKFFQMQCIQSK 263

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                 D    +    +F+    +  S         L  L +         H    D   
Sbjct: 264 LNTVPHDFRFYINIRRSFANKYCKKYSMQKINLGGMLTFLNMKF---EGREHSGLDDSKN 320

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQ 210
              +V  + E + +L       R K  
Sbjct: 321 IARIVIKMLEDRSELRVNEKLVRIKES 347


>gi|289178310|gb|ADC85556.1| Oligoribonuclease [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 237

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 19/128 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----AVFI- 60
           +  D E  G D+  D   + + V  D +   ++       KP++  +   +    A+   
Sbjct: 38  IWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDKGIDLVIKPSEAAVAHMDDFVRAMHTR 97

Query: 61  --------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                    G++ Q+A      E +    + QF       ++  N++  D  +       
Sbjct: 98  SGLIDEWENGLSVQEA------ERQVIDYVQQFIPQGVKPLLAGNSVGSDKKFLDRFMPN 151

Query: 113 NFYDSYRW 120
                +  
Sbjct: 152 LMEHLHYR 159


>gi|295698463|ref|YP_003603118.1| oligoribonuclease [Candidatus Riesia pediculicola USDA]
 gi|291157191|gb|ADD79636.1| oligoribonuclease [Candidatus Riesia pediculicola USDA]
          Length = 184

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
            + +  D E  G +   D+  + A +  D Q   +  
Sbjct: 5  KKNLIWIDLEMTGLNPKRDKIIEIATIITDSQINILSE 42


>gi|328717754|ref|XP_001946025.2| PREDICTED: ERI1 exoribonuclease 3-like [Acyrthosiphon pisum]
 gi|239793057|dbj|BAH72792.1| ACYPI003543 [Acyrthosiphon pisum]
          Length = 248

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 56/201 (27%), Gaps = 23/201 (11%)

Query: 4   HFVIYDYETF---GRDVALDR-PAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPD 54
            F + D+E     G  +   +   +F  + V        +E +      + KP    +  
Sbjct: 48  KFFVLDFEATCDNGAHLLKPQEIIEFPCILVKFNMAKGGFEVVSIFHS-YVKPIIHTVLT 106

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
                +TG+T            +       FF+  N     ++N   +    ++I   + 
Sbjct: 107 EYCTQLTGVTQDMVSNSP-PFDDV------FFNFCN-----WHNDHTNMGKEKSIIVTSG 154

Query: 115 YDSYRWSWDNGNSRWD-LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                  +      +   + +   +  +      +              L   N  +  N
Sbjct: 155 NWDIGNMFIEQCKLFPSTIKIPEFMCTWINIKKLFALTMGEYPLGIKSMLKTTNSKQFGN 214

Query: 174 AHDAKADVYATLALVWLIREK 194
            H    D    + ++  + ++
Sbjct: 215 IHSGIDDCVNIITIMNQLSQR 235


>gi|317505657|ref|ZP_07963560.1| exonuclease [Prevotella salivae DSM 15606]
 gi|315663242|gb|EFV03006.1| exonuclease [Prevotella salivae DSM 15606]
          Length = 175

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 45/175 (25%), Gaps = 29/175 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V R    ++        P  DY        + 
Sbjct: 14  MKDFAAIDFET--ANGKRTSVCSVGVVIV-RNGMIVDRFYSLIH-PEPDY-YTYWNTKMH 68

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T         +  E  R+I           +  +N  FD+        +  +  Y+ +
Sbjct: 69  GLTQADTNNAP-IFPEVWRKIMPLIDQ---LPLVAHNKAFDE-----SCLKAVFKCYQMT 119

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           + +      LL               WP          L  +A   G      H 
Sbjct: 120 YPDYIFHCTLL----------KSRSVWPQ-----GRHNLGIIAARCGYNLTQHHH 159


>gi|83309140|ref|YP_419404.1| inhibitor of the KinA pathway to sporulation [Magnetospirillum
          magneticum AMB-1]
 gi|82943981|dbj|BAE48845.1| Inhibitor of the KinA pathway to sporulation [Magnetospirillum
          magneticum AMB-1]
          Length = 188

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 15/90 (16%)

Query: 6  VIYDYE-TF--GRD------VALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
          V+YD E T   G            R   Q   VR+D   E          KP  +     
Sbjct: 8  VVYDLEYTTWEGARERRWSGPGEHREVVQVGAVRLDDGAE-----LSLLVKPRLNPGLST 62

Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQF 85
              +TGIT  +  R G+   E   R+  F
Sbjct: 63 YFTDLTGITQDQVDRAGMDFPEALCRLADF 92


>gi|333030386|ref|ZP_08458447.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332740983|gb|EGJ71465.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 279

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 54/205 (26%), Gaps = 37/205 (18%)

Query: 5   FVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           F+  D ET            Q     V    E ++  E +  +P      +     I GI
Sbjct: 6   FIAIDVETATSAKPRF--ICQIGLAYV-LDGEIVKK-ESYLVQP-PHNHIEYRNTMIHGI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                 +      +   +I           +  +N +FD+       +     +   S+ 
Sbjct: 61  YESDTAQAP-TLPQVWEKIGFDLRYNQ---LVAHNAKFDEAVIAENLFHFRIPNNLRSF- 115

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                    +++                        L+DL  A  I + N HDA  D   
Sbjct: 116 -----ICTYELLH---------------------LGLEDLCYAYQIAYTNHHDACFDAAC 149

Query: 184 TLALVWLIREKKPKLFEYLYDYRNK 208
                   ++     F  +   + K
Sbjct: 150 CAQFYINYQQGLHPQFSRIPQQKKK 174


>gi|307177230|gb|EFN66425.1| DNA polymerase III polC-type [Camponotus floridanus]
          Length = 141

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 35/113 (30%), Gaps = 24/113 (21%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG--- 62
           V++D ET GR    D   Q A +             VF          D  A  I G   
Sbjct: 41  VVFDLETSGRKKNSD-ILQLAAIV---------QENVFSVYVTPTQDVDKFASEINGLHN 90

Query: 63  ------ITPQKALRDGVVEAEFSRRIHQFFSVPN---TCIIGYNNIRFDDYYS 106
                 +  +K L   +   +  +  + F         CI+  +N  FD  + 
Sbjct: 91  IGRELYLRNEKLLT--LSMVDALQAFYAFLCKVGKSKKCILIAHNASFDISFF 141


>gi|222111865|ref|YP_002554129.1| oligoribonuclease [Acidovorax ebreus TPSY]
 gi|221731309|gb|ACM34129.1| Exonuclease RNase T and DNA polymerase III [Acidovorax ebreus TPSY]
          Length = 192

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 21/132 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
            + V  D E  G +   +R  + A V                 +     +   +AV    
Sbjct: 17  QNLVWLDCEMSGLNPETERLLEIAVVVTSADL-------TLRVEGPVFAIHQADAVLDGM 69

Query: 60  ------ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108
                   G +    K     + EA+  R +  F S         +  N+I  D  +   
Sbjct: 70  DAWNKGTHGRSGLIDKVRASTITEADAERELLAFLSRYVPKGVVPMCGNSIGQDRRFLVK 129

Query: 109 IFYRNFYDSYRW 120
              +     +  
Sbjct: 130 YMPKLEAFFHYR 141


>gi|83649263|ref|YP_437698.1| hypothetical protein HCH_06640 [Hahella chejuensis KCTC 2396]
 gi|83637306|gb|ABC33273.1| conserved hypothetical protein [Hahella chejuensis KCTC 2396]
          Length = 182

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 7  IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFITGITP 65
            D+E    D+    P +      D       +   +  +PA        EA  I GIT 
Sbjct: 25 FIDFEASSLDLICSYPIEVGVCLPD------GAIHSWLLRPAPLWTDWSEEACAIHGITR 78

Query: 66 QKALRDGVVEAEFSRRIHQFF 86
          Q+   +GV   + +  +++  
Sbjct: 79 QQLQEEGVNIVDVAHALNELL 99


>gi|302383989|ref|YP_003819812.1| exonuclease RNase T and DNA polymerase III [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194617|gb|ADL02189.1| Exonuclease RNase T and DNA polymerase III [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 252

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 41/185 (22%), Gaps = 26/185 (14%)

Query: 7   IYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           + D ET G         +     V +        S E         +   P+ + +  I 
Sbjct: 11  VVDLETAGT--GQSDVCEIGWQDVVLGGDGRWSLSAERGARWVNPGHPISPDTMAVHHIL 68

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +          + +  + +         +  +   F+  Y                   
Sbjct: 69  DEWVADAPY-WKDVAPAVLR--PDGGVVALAAHRASFEQRYCSPRL------------TG 113

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G            I+           R         + L    G+    AH A  D Y T
Sbjct: 114 GAEWICTWKCALRIWPDLSRFSNQMLRYQRRP----EGLVHEMGLP---AHRALPDAYVT 166

Query: 185 LALVW 189
              + 
Sbjct: 167 AHHLR 171


>gi|170746460|ref|YP_001752720.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
 gi|170652982|gb|ACB22037.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
          Length = 289

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 49/191 (25%), Gaps = 29/191 (15%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +  D+ET   +   D         +      +   E    +P  +    P  + + GI
Sbjct: 2   TVLALDFET--ANERRDSACAVGLAWI-ADGRVVRR-ESHLIRP-PEMRFAPGNIRVHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
            P           +F+  +  +       +I  +N  FD    R    R           
Sbjct: 57  LPADVADKP----DFAAVMAPYLGDLARGLILAHNASFDIGVLRAGLTRAGLP------- 105

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                   L  ++                       L  +A   GI   + HDA  D YA
Sbjct: 106 --VPDLAYLCTVQVSRRVF----------PAPEGCGLGKVARRLGIRFEH-HDAGEDAYA 152

Query: 184 TLALVWLIREK 194
              +      +
Sbjct: 153 CAEIALAAMRE 163


>gi|195503017|ref|XP_002098476.1| GE23924 [Drosophila yakuba]
 gi|194184577|gb|EDW98188.1| GE23924 [Drosophila yakuba]
          Length = 184

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           V  D E  G D+  D+  + + +  D+       
Sbjct: 11 IVWMDLEMTGLDIEKDKILEVSCIITDKDLNVKSE 45


>gi|116253032|ref|YP_768870.1| DNA polymerase/exonuclease [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257680|emb|CAK08778.1| putative DNA polymerase/exonuclease [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 196

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 44/170 (25%), Gaps = 29/170 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                I D+ET   +             +          E    +P  D       + I 
Sbjct: 1   MKTIAI-DFET--ANEQRGSACSVGLAWI-EDGRVT-RVEERLIRPR-DMRFSGMNIAIH 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+          E      + F       +  +N  FD        +R   D YR S
Sbjct: 55  GIRPEHVEDAPE-FPEVMDEFEEDFR---GATMIAHNAAFDFSV-----WRASLDLYRQS 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           +            +  + +       WP       S +L  +A   G+  
Sbjct: 106 Y----------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRF 141


>gi|291002083|ref|XP_002683608.1| exonuclease family protein [Naegleria gruberi]
 gi|284097237|gb|EFC50864.1| exonuclease family protein [Naegleria gruberi]
          Length = 366

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 51/197 (25%), Gaps = 19/197 (9%)

Query: 5   FVIYDYETF---GRDV----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
            VI D+E     G +           +F  V  D    ++   E ++ KP       P  
Sbjct: 135 LVIIDFEATCDNGVNPVITRDNQEMIEFPFVVFDLASMEVIHKERYYVKPTWSDKLTPFC 194

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGIT +   ++G+  +   +  H +     T    +         + + +       
Sbjct: 195 TQLTGITDEILEKEGISLSNAIQNFHNYVKKTFTDGKTF------CILTDSEWDIKGLLI 248

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
              +              R  Y    +  +            + D +          H  
Sbjct: 249 KEATTKG----ISFDSYFRTFYDLRKEYSKCYPYAFVRGLKSMVDQSGL--SFVGQHHSG 302

Query: 178 KADVYATLALVWLIREK 194
             D      +V  +   
Sbjct: 303 LCDCLTISEIVKRMIYD 319


>gi|146087811|ref|XP_001465911.1| phosphotransferase [Leishmania infantum JPCM5]
 gi|134070012|emb|CAM68342.1| putative phosphotransferase [Leishmania infantum JPCM5]
          Length = 570

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 56/214 (26%), Gaps = 17/214 (7%)

Query: 3   NHFVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
           + +V+ D+E      R +A     +F  + VD R    +   +  + +P  + +      
Sbjct: 56  DAYVVLDFEATCEADRRIADAEVIEFPMILVDARTATPVAEFQ-RYVRPVKNPVLSRFCT 114

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFY 111
            +TGIT                   QF +                    +D         
Sbjct: 115 ELTGITQDMVSGRD-PFPVVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPAQM 173

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R               RW  L    +   F        +      S  + D+    G+  
Sbjct: 174 RVSGQQGT---PLSFQRWCNLKKCMSQLGFGNGSGCGGAAPPLRPS-GMPDMLQMLGLPL 229

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205
              H +  D    L  V     ++  + +  +  
Sbjct: 230 QGRHHSGIDDCRNLTAVLCALLRRGLVIDVTFST 263


>gi|322499398|emb|CBZ34471.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 570

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 56/214 (26%), Gaps = 17/214 (7%)

Query: 3   NHFVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
           + +V+ D+E      R +A     +F  + VD R    +   +  + +P  + +      
Sbjct: 56  DAYVVLDFEATCEEDRRIADAEVIEFPMILVDARTATPVAEFQ-RYVRPVKNPVLSRFCT 114

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFY 111
            +TGIT                   QF +                    +D         
Sbjct: 115 ELTGITQDMVSGRD-PFPVVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPAQM 173

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R               RW  L    +   F        +      S  + D+    G+  
Sbjct: 174 RVSGQQGT---PLSFQRWCNLKKCMSQLGFGNGSGCGGAAPPLRPS-GMPDMLQMLGLPL 229

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205
              H +  D    L  V     ++  + +  +  
Sbjct: 230 QGRHHSGIDDCRNLTAVLCALLRRGLVIDVTFST 263


>gi|317124466|ref|YP_004098578.1| exonuclease RNase T and DNA polymerase III [Intrasporangium calvum
           DSM 43043]
 gi|315588554|gb|ADU47851.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium calvum
           DSM 43043]
          Length = 211

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 11/113 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVF 59
           ++  +  D E  G  +  D   + A +  D +   +        +P    L   D     
Sbjct: 14  SDRIIWIDCEMTGLSLRTDALVEVAALVTDFELTVLGEGVDVVIRPPAAALDQMDEFVRD 73

Query: 60  IT---GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
           +    G+  +  L  GV   E        +  F   P    +G N++  D  +
Sbjct: 74  MHTTSGLLDE--LDGGVTLEEAQSLVLDYVRSFVPEPRKAPLGGNSVATDRGF 124


>gi|330984124|gb|EGH82227.1| exonuclease, RNase T and DNA polymerase III [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 206

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 21  RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
              +     +D  + E + +  V   KP    +       +T IT +      +   E  
Sbjct: 41  EVIEIGLAAIDMEKLEIVGTHSVLI-KPEHHPVLSEFCTSLTTITNEMLECAPL-FPEGL 98

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +   + S  N      +   FD ++ ++  +R   +
Sbjct: 99  DQAMGWLSKFNEDYAWCSWGMFDLHHLQHESHRKGVE 135


>gi|296221910|ref|XP_002756956.1| PREDICTED: 3'-5' exoribonuclease 1-like [Callithrix jacchus]
          Length = 348

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 129 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTRLSDFCISL 188

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R         +++  +  +         + +   +         +    R 
Sbjct: 189 TGITQDQVDRAD-TFPHVLKKVIDWMKLKELGTKYKYSILTDGSWDMSKFLNIQCQISRI 247

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y S+   W N    + +   V R+    +    +     DG     L D
Sbjct: 248 KYPSFAKKWINIRKSYGNFYKVPRSQTKLAIMLEKLGMDYDGRPHCGLDD 297


>gi|227488247|ref|ZP_03918563.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091817|gb|EEI27129.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 203

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 11/154 (7%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55
           M+N     V  D E  G D       + A    D     +           +D L   D 
Sbjct: 1   MSNKDNRIVWIDLEMTGLDPKRHVIVEAAVHITDNDLTILGDGLDLVIHATEDELKEMDE 60

Query: 56  EAVFIT---GITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIF 110
               +    G+  +      +  AE  ++I  +          +  N+I  D  + R   
Sbjct: 61  VVTKMHTSNGLIDE-IRESPLSCAEAEKQIIAYIDEHCDGHPPLAGNSIATDRSFIREYM 119

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPD 144
                  +    D  + +      M  IY+  P+
Sbjct: 120 PDLDQRLHYRMIDVSSLKVLARKWMPTIYSHQPE 153


>gi|194910229|ref|XP_001982095.1| GG12405 [Drosophila erecta]
 gi|190656733|gb|EDV53965.1| GG12405 [Drosophila erecta]
          Length = 184

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 14/39 (35%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
           V  D E  G D+  D+  + + +  D+          F
Sbjct: 11 IVWMDLEMTGLDIEKDKILEVSCIITDKDLNVKSEATCF 49


>gi|149924278|ref|ZP_01912650.1| oligoribonuclease [Plesiocystis pacifica SIR-1]
 gi|149814858|gb|EDM74424.1| oligoribonuclease [Plesiocystis pacifica SIR-1]
          Length = 179

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 48/182 (26%), Gaps = 18/182 (9%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VF 59
             H +  D E  G D   +   + A +  + + E I           D  L   +A    
Sbjct: 5   QPHLIWLDMEMTGLDPEREVILEVATLVTNAELEIIAEGPDLVVHHGDAVLDGMDAWCTE 64

Query: 60  ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
             G +   Q      +  AE   +   F      P    +  N+I  D  +         
Sbjct: 65  HHGASGLTQAVRESSISLAEAEAQTLDFLRQHCEPGKSPLCGNSIGQDRRFIVR------ 118

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVN 173
                    +G   +  +DV              P  +       L D+  + G   H  
Sbjct: 119 ----YMPALDGFLHYRSVDVSSIKELARRWYPDLPGFEKSEAHRALDDIRESIGELRHYR 174

Query: 174 AH 175
            H
Sbjct: 175 RH 176


>gi|121595648|ref|YP_987544.1| oligoribonuclease [Acidovorax sp. JS42]
 gi|166215746|sp|A1WB43|ORN_ACISJ RecName: Full=Oligoribonuclease
 gi|120607728|gb|ABM43468.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
          Length = 192

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 21/132 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
            + V  D E  G +   +R  + A V                 +     +   +AV    
Sbjct: 17  QNLVWLDCEMSGLNPETERLLEIAVVVTSADL-------TLRVEGPVFAIHQADAVLDGM 69

Query: 60  ------ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108
                   G +    K     V EA+  R +  F S         +  N+I  D  +   
Sbjct: 70  DAWNKGTHGRSGLIDKVRASTVTEADAERELLAFLSRYVPKGVVPMCGNSIGQDRRFLVK 129

Query: 109 IFYRNFYDSYRW 120
              +     +  
Sbjct: 130 YMPKLEAFFHYR 141


>gi|39945028|ref|XP_362051.1| hypothetical protein MGG_04496 [Magnaporthe oryzae 70-15]
 gi|145011396|gb|EDJ96052.1| hypothetical protein MGG_04496 [Magnaporthe oryzae 70-15]
          Length = 223

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 33/129 (25%), Gaps = 17/129 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---------TEVFFCKPADDYLPDP 55
            V  D E  G +   +   +   +  D      +          T+    K  +      
Sbjct: 8   LVWIDCEMTGLNPDSEEIIEIFCLVTDGDLNLKDEEGWGTVVHQTQERMDKMDEWCTKQH 67

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFY 111
               +T     + +       E +  +  +           ++  +++  D  + R   Y
Sbjct: 68  GGSGLT----ARVVGSTTTPEEAADGLLAYIKKHVPHAGVALLAGSSVHHDRAFLRRAPY 123

Query: 112 RNFYDSYRW 120
               D   +
Sbjct: 124 NRVTDHLHY 132


>gi|21672521|ref|NP_660588.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|21623143|gb|AAM67799.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 234

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 66/233 (28%), Gaps = 17/233 (7%)

Query: 1   MTNH---FVIYDYETFGRD----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
           M N+    ++ D ET G +      L+      G                + KP    L 
Sbjct: 1   MMNNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN--RLI 58

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           + +A  I GIT            + ++    +       I   +N  FD  +    F   
Sbjct: 59  ESDASKIHGITDDFLSDKP-SFKDIAKDFFNYIKNSELII---HNASFDVGFINQEFSML 114

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEHV 172
                  S  N  +  D L + R ++    +       R     S ++   A+ +     
Sbjct: 115 TKKIQDIS--NFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLG 172

Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
             +        ++     I+ +             K++  K+I        +H
Sbjct: 173 KLYLLMTSGQESIIFNKNIQNE-RNFRYIKKSITKKHRFLKIIKANKTELKLH 224


>gi|326428201|gb|EGD73771.1| hypothetical protein PTSG_05464 [Salpingoeca sp. ATCC 50818]
          Length = 1104

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/411 (10%), Positives = 97/411 (23%), Gaps = 23/411 (5%)

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           ++ +               F       +   +  +     + N      +     ++   
Sbjct: 81  EELMNTLQPHYYNLVDAMDFQDRVKEVVASMSACQMRLQLNLNYRLTALFLDLLHTYVAV 140

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 LD  R I             +      +L  L L         +         +
Sbjct: 141 ILLLFRLDSRRMIAMVFNATYSMFKGNMEPAYPRLSQLLLDYDTPARVMYAPFKPHINMI 200

Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245
               +             D   K  L  + +     P                ++     
Sbjct: 201 LTPLMSVRAHLDTMYQTADEFRKAHLLNIANN----PAKMTEPEHMYD-----VLPFTTS 251

Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD-ELKGLVPVPIKEVHLNKCPILM 304
             R    ++   L     + +D   + + + L      +L          +       L 
Sbjct: 252 TDRMIHWLVFGYLLIPNALAEDESMMTMLRCLGDGFVLQLYRTEVAYPHTLLDTTLASLA 311

Query: 305 PIDYCKKEHFERWGIDHKRCLE----NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
                 K+  +          E    +        +   +  A+           +   L
Sbjct: 312 DAKKMSKQKAQVAEQLAAAITEAPTLHRDRRTYLRHSLAQLLALVQDKPGLLGPKMPVVL 371

Query: 361 YDGFFADVDRQI-MDRILRTAPEQLSTLNLP-FSDRRLPELFFRYRARNFPHTLSEKEKQ 418
                A  +    M       P+  + +N   F D+ L EL F     N+   L + ++ 
Sbjct: 372 RGLVMARDEVNWLMRHAHAQPPKAKAKVNPKVFQDKDLSELLFYITEFNY---LLKGQRA 428

Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
               + K  LT   +   +  + +L       E +  ++N   + L+ +  
Sbjct: 429 IISRYFKDFLTGHNLTVIRETIGAL----HLSEHEHKILNGFAQTLEALAS 475


>gi|62079013|ref|NP_001014165.1| 3'-5' exoribonuclease 1 [Rattus norvegicus]
 gi|78098993|sp|Q5FVR4|ERI1_RAT RecName: Full=3'-5' exoribonuclease 1; AltName: Full=Histone mRNA
           3'-exonuclease 1
 gi|58476450|gb|AAH89828.1| Three prime histone mRNA exonuclease 1 [Rattus norvegicus]
 gi|149057952|gb|EDM09195.1| three prime histone mRNA exonuclease 1 [Rattus norvegicus]
          Length = 345

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 126 ICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEFCIGL 185

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++ ++              +   +         +    R 
Sbjct: 186 TGITQDQVDRADA-FPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQCQLSRL 244

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y S+   W N    + +   V R+    +    +     DG     L D
Sbjct: 245 KYPSFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 294


>gi|258563774|ref|XP_002582632.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237908139|gb|EEP82540.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 174

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 11/118 (9%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP----DPEAVFITGIT--PQ 66
            G D   D   Q +    D     +   + F              +P  +   G +    
Sbjct: 2   TGLDPETDHILQISCFLTDADLALL-EPDGFHVTIHQPQHILSSMNPWCISTHGRSGLTA 60

Query: 67  KALRDGVVEAEFSRRIHQFFS----VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             L      +E S  +  +       P T ++  N++  D  +     Y+   D   +
Sbjct: 61  AVLASTTSPSEASEALLAYVQTYVPEPRTALLAGNSVHADRAFLAREPYKKVVDWLHY 118


>gi|159489154|ref|XP_001702562.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280584|gb|EDP06341.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 180

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 15/119 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDPE 56
            V  D E  G D+  D   + A +  D + E+        I  ++       D       
Sbjct: 1   LVWVDLEMTGLDIEKDTIIEMACIITDGELERSVQGPATAIHHSDAVLEGMNDWCKEHHG 60

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYR 112
           A  +T    Q+     V      + +  F +         +  N++  D  +      R
Sbjct: 61  ASGLT----QRVRDSRVDMGAAEQMLLDFIAEHTEEGMAQLAGNSVHVDRIFLLKHMPR 115


>gi|153870628|ref|ZP_01999989.1| ribonuclease T [Beggiatoa sp. PS]
 gi|152072905|gb|EDN70010.1| ribonuclease T [Beggiatoa sp. PS]
          Length = 212

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 53/197 (26%), Gaps = 27/197 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF---FCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A V +    E +            P +    D +A+   G
Sbjct: 19  VVVDVETAGFNPERDALLEIAAVILQINEEGLWQPHQTHFSHIVPFEGANLDKQALEFIG 78

Query: 63  ITPQKALRDGVVEAE----FSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
           + P    R    EAE      + I +   +      ++  +N  FD  +      R    
Sbjct: 79  VDPFHPFRFAKQEAEGLETVFKPIRKAVKIYGCTRAVLVGHNPSFDLSFINAASERTGV- 137

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  +   R+   D            +   +             A         AH 
Sbjct: 138 ------KSPFHRFSTFDTATLAGLVYGQTVLARAVQ-----------AAGFEWNTSEAHA 180

Query: 177 AKADVYATLALVWLIRE 193
           A  D   T  L   I  
Sbjct: 181 AIYDAQRTADLFCTIVN 197


>gi|115715567|ref|XP_001183444.1| PREDICTED: similar to three prime repair exonuclease 1, putative
           [Strongylocentrotus purpuratus]
          Length = 424

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 36/143 (25%)

Query: 3   NHFVIYDYETFG-RDVALDRPAQFAGVRVDRQW--------------------------- 34
           N FV  D+ET         +  + + + V+R                             
Sbjct: 10  NSFVFLDFETSHLLSKDHPKIIELSLIAVNRNGLLNSDVHTSLNCARKGNFTFDLSKVSL 69

Query: 35  -EKIESTEVFFCKPADDYLPDPEAVFITGITPQKA-LRDGVVEAE-FSRRIHQFFSV--P 89
              I+        P       P++  IT +  +       +   E     I  F S    
Sbjct: 70  PRIIDK-LTLCVDPRKST--SPQSARITKLDKRNLDKNKKLPFDEDVICMIKLFLSRQEA 126

Query: 90  NTCIIGYNNIRFDDYYSRNIFYR 112
             C++ +N +RFD    R+   R
Sbjct: 127 PVCLVAHNGLRFDFAILRSELSR 149


>gi|330719972|gb|EGG98425.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047]
          Length = 212

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 25/166 (15%)

Query: 36  KIESTEV---FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC 92
            I+       +      +   D  A  + GIT        V  A+ +     F       
Sbjct: 3   VIDRKLTGRHYHQYINPERDIDDGAAEVHGITSDFLADKPV-FADIANEFLAFIKGAE-- 59

Query: 93  IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152
            +  +N  FD  +  +      +          +   D++D +       P         
Sbjct: 60  -LVIHNAPFDVGFIDHE-----FRLLNQGHPKTSEICDIIDTIVMARKKHPGQKN----- 108

Query: 153 DGATSFKLQDLALANGIEHV--NAHDAKADVYATLALVWLIREKKP 196
                  L  L    G+++   + H A  D      +  L+   + 
Sbjct: 109 ------NLDALCKRYGVDNSARDLHGALLDAEILADVYLLMTGGQT 148


>gi|146302457|ref|YP_001197048.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
 gi|146156875|gb|ABQ07729.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium
           johnsoniae UW101]
          Length = 181

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 7/133 (5%)

Query: 2   TNHFVIYDYETF---GRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           T+  +I D E     G       +   +     +D Q  +I   +    KP    +  P 
Sbjct: 4   TDKIIIIDLEATCWQGVVPKGQQNEIIEIGLAVLDSQTGEITKNKGILIKPQRSTV-SPF 62

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +T IT     ++GV   E    +   ++ P+            +  ++         
Sbjct: 63  CTELTTITQDLLDKNGVSFEEAVNLLIDEYN-PDLYTWASYGQYDLNMLTKQCKSFGIPY 121

Query: 117 SYRWSWDNGNSRW 129
                  N    +
Sbjct: 122 PMGEEHINVKEHF 134


>gi|284990013|ref|YP_003408567.1| Exonuclease RNase T and DNA polymerase III [Geodermatophilus
           obscurus DSM 43160]
 gi|284063258|gb|ADB74196.1| Exonuclease RNase T and DNA polymerase III [Geodermatophilus
           obscurus DSM 43160]
          Length = 225

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 23/163 (14%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           M +     V  D E  G D+  D+  + A +  D +   ++         ADD   +   
Sbjct: 1   MADSAGHLVWIDCEMTGLDLTRDKLIEVAVLVTDSELNVLDPGLDLVIS-ADDAALEGMV 59

Query: 58  VFITGITPQKALRDGVVEA-------------EFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
             +T    +   + G+ EA             +    + +F     T  +  N+I  D  
Sbjct: 60  EVVT----EMHAKSGLTEAVRASTLTVAEAEQQLLAYVKRFVPERRTAPLCGNSIGTDRG 115

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
           +          D +        S    L        +     +
Sbjct: 116 FL--ARDMPELDDHLHYRMIDVSSVKELARRWFPRVYFAQPQK 156


>gi|167945402|ref|ZP_02532476.1| exonuclase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 168

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 12/150 (8%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDG 72
            G     D       V +      +++      +  +  +P+  AV I  IT   A   G
Sbjct: 6   TGLKPKQDSILSIGLVNIRALQIHLDTAWHRVIRV-EQQIPESSAV-IHQITDDHAA-AG 62

Query: 73  VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLL 132
           +   E   ++ +  S     ++  +    +  +      R +   +           D L
Sbjct: 63  IPLEEALPQLLRQLS---GKVMLAHYKSIEQNFLDAACQRLYGTPFII------PIIDTL 113

Query: 133 DVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
           ++ + ++A     IQ         +  LQ 
Sbjct: 114 ELAQRLFAQRNHSIQPGDLRLFQPTATLQS 143


>gi|260904928|ref|ZP_05913250.1| oligoribonuclease [Brevibacterium linens BL2]
          Length = 189

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT---GITPQK 67
            G D   D   + A V  D     ++       KP+   L   +     +    G+  + 
Sbjct: 2   TGLDEVRDELIEVAAVITDFDLNPLDEGIDIVIKPSAAALENMNDFVTKMHTSSGLITE- 60

Query: 68  ALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIF 110
            L  G   AE   ++ ++            +G N++  D  +     
Sbjct: 61  -LDAGTTVAEAQTQVLEYIKKHVPEAGKAPLGGNSVGTDKVFLNKQM 106


>gi|227529584|ref|ZP_03959633.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
 gi|227350483|gb|EEJ40774.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
          Length = 178

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 30/192 (15%)

Query: 4   HFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +FV  D+ET  G+  +         + + R  +  +                   V I G
Sbjct: 2   NFVAMDFETANGKRYSACSL----ALTIVRDSKIADEFYTL---INPQTDFFWRNVQIHG 54

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I  +          E  + I QF       ++  +N  FD+   +N              
Sbjct: 55  IHEEDVQDAP-TFPEVWQHIKQF--YRPEQLVIAHNNSFDNSVLKNTLLHYGIQP----- 106

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
                 +  LD +++     P              ++L  +  A  I+  + H+A  D  
Sbjct: 107 ----PTFQTLDTVKSSRRLIPGLDN----------YRLNTVCDALQIDLHHHHNALDDAQ 152

Query: 183 ATLALVWLIREK 194
           A   ++    + 
Sbjct: 153 ACANILLYEAQH 164


>gi|170094696|ref|XP_001878569.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647023|gb|EDR11268.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 284

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 16/102 (15%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGV------RVDRQW----EKIESTEVFFCKPADD 50
           F++ D E     G D    +   +F         R D  +    E ++     + KP   
Sbjct: 40  FLVLDIEGTCDQGTDFNYPNEIIEFPVCLMRWKNRTDDDFCSELEVVDEFRT-YVKPKWR 98

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC 92
                    +TGIT  +     +   +    + +F +     
Sbjct: 99  PTLSKFCTELTGITQAQVDDAPL-FPDVLVDLEKFLAKHGLI 139


>gi|66472468|ref|NP_001018476.1| ERI1 exoribonuclease 2 [Danio rerio]
 gi|82228769|sp|Q502M8|ERI2_DANRE RecName: Full=ERI1 exoribonuclease 2; AltName: Full=Exonuclease
           domain-containing protein 1
 gi|63100865|gb|AAH95637.1| Zgc:111991 [Danio rerio]
          Length = 555

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/198 (10%), Positives = 48/198 (24%), Gaps = 12/198 (6%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFI 60
            +I D+E+     +  +     +F  V +              + +P +  +       +
Sbjct: 35  LIIIDFESTCWREKSSSGQEIIEFPAVLLSVCSGAVESEFHS-YVQPQERPVLSAFCTEL 93

Query: 61  TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           TGIT  +      +    + FSR +           +  ++              + +D 
Sbjct: 94  TGITQDQVDSAPPLHVVLSRFSRWLRSLQEERGVVFLTDSSGAAPSAQLCAFVTWSDWDL 153

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALANGIEHVNAHD 176
                     +   +      +       +             L DL +         H 
Sbjct: 154 GVCLLYECKRKQLSVPEALKNWIDLRATYKLFYNRKPKGLRGALLDLGIEF---TGREHS 210

Query: 177 AKADVYATLALVWLIREK 194
              D   T  L   +   
Sbjct: 211 GLVDARNTALLAQRMMTD 228


>gi|115379892|ref|ZP_01466953.1| DNA polymerase B, exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|310817667|ref|YP_003950025.1| DNA polymerase [Stigmatella aurantiaca DW4/3-1]
 gi|115363108|gb|EAU62282.1| DNA polymerase B, exonuclease [Stigmatella aurantiaca DW4/3-1]
 gi|309390739|gb|ADO68198.1| DNA polymerase [Stigmatella aurantiaca DW4/3-1]
          Length = 802

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 30/110 (27%), Gaps = 29/110 (26%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           +D ET G +   DR                    V    P       PE +   G     
Sbjct: 161 FDLETTGLEPDHDRI-----------------FLVALRTPEG----QPETLEAHG----- 194

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNFYD 116
                  EAE  +R+       +  +I  +N   FD  +  +   R    
Sbjct: 195 --DSDAAEAELLQRLAARIRACDPDVIENHNLHGFDLPFLAHRAKRLGVP 242


>gi|198274893|ref|ZP_03207425.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135]
 gi|198272340|gb|EDY96609.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135]
          Length = 163

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 25/160 (15%)

Query: 32  RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT 91
           R  E  ++       P  +Y        + G+T +      V       +I         
Sbjct: 28  RNGEIADTFYSLI-NPEPNY-YTYWCSQVHGLTREDTEDAPV-FPAVWAQIEPLIE---G 81

Query: 92  CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151
             +  +N  FD+   + +F     D   + +      +D L V R ++            
Sbjct: 82  LPLVAHNRPFDESCLKAVFRVYQMDYPDYEF------YDTLCVARRVF------------ 123

Query: 152 DDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191
                + +L  +A A G    N H A AD  A   +   I
Sbjct: 124 -PELPNHQLHTVAAACGYRLENHHHALADAEACAWIAREI 162


>gi|349620|gb|AAA17435.1| DNA polymerase III epsilon subunit [Buchnera aphidicola]
          Length = 179

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 14/151 (9%)

Query: 1   MTNH--FVIYDYETFGRD----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N    ++ D ET G +      L+      G                + KP    L +
Sbjct: 1   MNNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN--RLIE 58

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GIT            + ++    +       I   +N  FD  +    F    
Sbjct: 59  SDASKIHGITDDFLSDKP-SFKDIAKDFFNYIKNSELII---HNASFDVGFINQEFSMLT 114

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDG 145
                 S  N  +  D L + R ++    + 
Sbjct: 115 KKIQDIS--NFCNIIDTLKIARKLFPGKKNT 143


>gi|156052617|ref|XP_001592235.1| hypothetical protein SS1G_06475 [Sclerotinia sclerotiorum 1980]
 gi|154704254|gb|EDO03993.1| hypothetical protein SS1G_06475 [Sclerotinia sclerotiorum 1980
          UF-70]
          Length = 190

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           V  D E  G D+  D   + + +  +   E ++ 
Sbjct: 10 LVWIDCEMTGLDIEKDVIIEISCIITNGNLEILDK 44


>gi|227542846|ref|ZP_03972895.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181351|gb|EEI62323.1| oligoribonuclease [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 203

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 11/154 (7%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDP 55
           M+N     V  D E  G D       + A    D     +           +D L   D 
Sbjct: 1   MSNKDNRIVWIDLEMTGLDPKRHVIVEAAVHITDNDLTILGDGLDLVIHATEDELKEMDE 60

Query: 56  EAVFIT---GITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIF 110
               +    G+  +      +  AE  ++I  +          +  N+I  D  + R   
Sbjct: 61  VVTKMHTSNGLIDE-IRESPLSCAEAEKQIIAYIDEHCDGHPPLAGNSIATDRSFIREYM 119

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPD 144
                  +    D  + +      M  IY+  P+
Sbjct: 120 PDLDQRLHYRMIDVSSLKVLARKWMPTIYSHQPE 153


>gi|268578587|ref|XP_002644276.1| Hypothetical protein CBG14047 [Caenorhabditis briggsae]
          Length = 292

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 14/200 (7%)

Query: 1   MTNHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDP 55
           M    +I D+ET       D      QF+ V  D + + I     F  F +P  + +   
Sbjct: 1   MQTRVIILDFETTSEGETHDYPFEVIQFSVVPYDVKAKTILEGHAFNKFVRPVVNPVLSK 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
                TGI  +             ++  ++                    SR   +R   
Sbjct: 61  HCTEFTGIKQESLNAAD-TFLVVYKQFLKWLQKNG----FQERHFAIVSDSRQDMWRIAQ 115

Query: 116 DSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
             +R   +   S +   +++ R       DG +            L  L +        A
Sbjct: 116 YQFRLVQETMPSMFRQWINIKRTFDDGLEDGQKNKLVGRSNMEKMLNYLGIEFS---GRA 172

Query: 175 HDAKADVYATLALVWLIREK 194
           HDA +D     A+   I E 
Sbjct: 173 HDALSDCLTLAAITQKILEM 192


>gi|293189781|ref|ZP_06608496.1| oligoribonuclease [Actinomyces odontolyticus F0309]
 gi|292821288|gb|EFF80232.1| oligoribonuclease [Actinomyces odontolyticus F0309]
          Length = 198

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 24/114 (21%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP------- 65
            G DV  D   + A V  D     ++        P  D L  P A  +  +         
Sbjct: 2   TGLDVQRDALIEVAVVVTDGDLTIVD--------PGMDVLITPPAEALDNMNDFVRNMHT 53

Query: 66  -----QKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
                      G+   E + +    I +F       ++  N++  D  +     
Sbjct: 54  SSGLLDDLQTSGLSMEEATEQVLSYIKRFVPQQGKALLAGNSVGTDKMFLEANM 107


>gi|304360909|ref|YP_003857029.1| gp57 [Mycobacterium phage CrimD]
 gi|302858658|gb|ADL71403.1| gp57 [Mycobacterium phage CrimD]
          Length = 184

 Score = 47.1 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 56/198 (28%), Gaps = 21/198 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M    ++ D ET   D     P + A + VD          V   +       DP+A+ I
Sbjct: 1   MARKLIVVDLETTSLDYDTAAPLEVALLNVDTGASLRFVPHVTCEQL---GAADPKAMEI 57

Query: 61  TGITPQKALRDGVVEAE---FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            G   +   R+ + E +       +  +         G N        +R      F   
Sbjct: 58  NGYYERGVWREALDERQTAVAWSEVQDWLR--GNTFAGSNPAFDSTIVARQRAGCMFTSP 115

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
               W        L D+                  D A    L D+A   G++    H A
Sbjct: 116 VGRVW-----HHRLADLAAYSAGKL--------DRDPAELVGLDDVAERLGVQVAQRHTA 162

Query: 178 KADVYATLALVWLIREKK 195
             D  AT     ++R   
Sbjct: 163 IGDAAATGLCFDVLRNTA 180


>gi|55670498|pdb|1W0H|A Chain A, Crystallographic Structure Of The Nuclease Domain Of
           3'hexo, A Deddh Family Member, Bound To Ramp
          Length = 204

 Score = 47.1 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 12  ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 71

Query: 61  TGITPQKALRDGVVEAEFSRRIHQF--FSVPNT-----CIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++  +       T      +   +         +    R 
Sbjct: 72  TGITQDQVDRAD-TFPQVLKKVIDWXKLKELGTKYKYSLLTDGSWDXSKFLNIQCQLSRL 130

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R+    +    +     DG     L D
Sbjct: 131 KYPPFAKKWINIRKSYGNFYKVPRSQTKLTIXLEKLGXDYDGRPHCGLDD 180


>gi|171463904|ref|YP_001798017.1| Exonuclease RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193442|gb|ACB44403.1| Exonuclease RNase T and DNA polymerase III [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 198

 Score = 47.1 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60
            H +  D E  G +   +R  + A +  D     I +  V+     +  L   +A     
Sbjct: 20  EHLIWVDMEMSGLNPETERILEIAIIVTDAHLNTIATAPVWVMHQENAVLDAMDAWNKGT 79

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            G +    K     + EA        F           +  N I  D  +      +   
Sbjct: 80  HGRSGLIDKVKASTLDEAAVEAECIAFLKKYIKAGIAPMCGNTIGQDRRFMAKYMSKLES 139

Query: 116 DSYRW 120
             +  
Sbjct: 140 YFHYR 144


>gi|315613078|ref|ZP_07887989.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|315315188|gb|EFU63229.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           sanguinis ATCC 49296]
          Length = 197

 Score = 47.1 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 36/196 (18%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +D E    +         Q + VR  +  ++  + + +    A           +TG
Sbjct: 7   YIAFDLE---FNQHEGVTHLIQVSAVRF-QDGQECAAFDSYVYTTAPLKS---FINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF--YRNFYDSYRW 120
           IT +       VE +  +    F       I+GYN  + D          YR+ Y    +
Sbjct: 60  ITAETLKDAPKVE-QVLKNFQAFVGDLP--IVGYNAAKSDLPILLEHGIDYRDQYKVDLY 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL  +                      + KLQ +A   G  H  +H++  D
Sbjct: 117 EEAFERRSSDLHGIA---------------------NLKLQTVANFLGF-HGKSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYEAFLESDE 170


>gi|307205735|gb|EFN83972.1| Three prime repair exonuclease 2 [Harpegnathos saltator]
          Length = 136

 Score = 47.1 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 11/120 (9%)

Query: 4   HFVIYDYETFGR--DVALDRPAQFAGVRVDRQWEKIESTEV-------FFCKPADDYLPD 54
            FV +D ET G        +  + A V V R+  +                         
Sbjct: 9   SFVFFDLETTGIFEGTVAPKITEMALVAVARESIRHNEQNSLPRILHKLILPINPQKTIP 68

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYR 112
               ++T +           E E    I  F +   P  C + +N  +FD     +    
Sbjct: 69  TRIQYMTKLYNDDMELLKPFEFEIYELIVAFLNRLRPPICFVAHNGDKFDFPVLLSELKC 128


>gi|300115276|ref|YP_003761851.1| exonuclease RNase T and DNA polymerase III [Nitrosococcus
          watsonii C-113]
 gi|299541213|gb|ADJ29530.1| Exonuclease RNase T and DNA polymerase III [Nitrosococcus
          watsonii C-113]
          Length = 183

 Score = 47.1 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          +++ +  D E  G +   D   + A V  D Q   IE 
Sbjct: 5  SSNLIWLDLEMSGLNTTQDVILEIATVVTDSQLNVIEE 42


>gi|158337902|ref|YP_001519078.1| exonuclease [Acaryochloris marina MBIC11017]
 gi|158308143|gb|ABW29760.1| exonuclease [Acaryochloris marina MBIC11017]
          Length = 183

 Score = 47.1 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 6/130 (4%)

Query: 5   FVIYDYETF-----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           ++I D E                 +   V ++ Q  +IES    F KP    +       
Sbjct: 8   YLIVDLEATCADDNSIPRRRMEMIEIGAVLLNSQTLQIESEYQTFIKPILHPVLTEFCKS 67

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I+ Q   +  +      +    +F    + +           + ++         + 
Sbjct: 68  LTSISQQDIEKAPL-FPAALKDFQSWFYPCGSYLFCSWGDYDRHQFVQDCQMHGVGYPFP 126

Query: 120 WSWDNGNSRW 129
               N    +
Sbjct: 127 GDHLNLKRAF 136


>gi|332304985|ref|YP_004432836.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172314|gb|AEE21568.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 224

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 55/205 (26%), Gaps = 30/205 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF----- 59
           F+  D E    D++  R      V  + + ++IE    F+       +    A       
Sbjct: 29  FLCIDLELTSLDLSATRILSIGWV--EGKGKQIELQSCFY------QVVSTTASLNQSPV 80

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I G+T +     G         +       ++ +  ++    D      +F +       
Sbjct: 81  IHGLTAEDIA-QGQP---VRVALEALVKYASSHVWVFHCTGLDMTVLNGVFKKLNIP--- 133

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                       +  +  +        +            L        +  V AH+A  
Sbjct: 134 ---------LPTVVTLDTLRFGLYQLTKNLRPPPPNAVV-LPVCRARYNLPAVPAHNALD 183

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D  ATL L++   +K          
Sbjct: 184 DAMATLELLFAQIQKFAPKNSDTLK 208


>gi|322492134|emb|CBZ27408.1| putative phosphotransferase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 584

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 3   NHFVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
           + +V+ D+E      R +A     +F  V VD R    +   +  + +P  + +      
Sbjct: 56  DAYVVLDFEATCEADRRIADAEVIEFPMVLVDARTATPVAEFQ-RYVRPVKNPVLSRFCT 114

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPN 90
            +TGIT                   QF +   
Sbjct: 115 ELTGITQDMVRGRD-PFPMVYCEALQFLAEAG 145


>gi|229104066|ref|ZP_04234741.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock3-28]
 gi|228679346|gb|EEL33548.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock3-28]
          Length = 273

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 59/222 (26%), Gaps = 24/222 (10%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V++D    + I                      +TGIT +  +       +F 
Sbjct: 18  EIVDIGAVKIDVSTMKVIGEFSEL---VKPSAPLTRHTTKLTGITKKDLIG----VEKFP 70

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           + I +F        +  +  + D ++  +    +  +         +SR+DL   +   Y
Sbjct: 71  QIIEKFIQFIGEDSVFISWGKEDYHFLSHDCTLHGLECPCME---KDSRFDLQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIR---EKKP 196
                        +   S +     L    E    H A AD   T  ++  I    +   
Sbjct: 128 ---------EELFEHTPSLQFAVEQLGLTWE-GKQHRALADAENTANILLKIYSERDINK 177

Query: 197 KLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           +   +      KN        + M   V       A R    
Sbjct: 178 RYKRHGELELVKNGKLTEKAKKKMRKWVFKELKKHAERPFVW 219


>gi|32491178|ref|NP_871432.1| oligoribonuclease [Wigglesworthia glossinidia endosymbiont of
           Glossina brevipalpis]
 gi|81844446|sp|Q8D2C5|ORN_WIGBR RecName: Full=Oligoribonuclease
 gi|25166385|dbj|BAC24575.1| yjeR [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 186

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 7/126 (5%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
             + +  D E  G ++  DR  + A V  D+  + +          +++ L    +  I 
Sbjct: 9   KKNLIWIDLEMTGLNLENDRIIEIATVITDKYVKILAEGPSIAIFQSEEQLKKMNSWNIF 68

Query: 61  TGITP---QKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNF 114
           T        +  +    E        +F S         I  ++I  D  +         
Sbjct: 69  THTKNGLIDRVRKSKYNEKNAMIDTLKFISSWVPFGKSPICGSSINHDRLFLSKYMPDLE 128

Query: 115 YDSYRW 120
              +  
Sbjct: 129 KYFHYR 134


>gi|93007037|ref|YP_581474.1| exonuclease [Psychrobacter cryohalolentis K5]
 gi|92394715|gb|ABE75990.1| Exodeoxyribonuclease X [Psychrobacter cryohalolentis K5]
          Length = 242

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 70/255 (27%), Gaps = 45/255 (17%)

Query: 1   MTNHFVIYDYETF-GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           M +  +I D ET  GRD    RP Q A + V   +E ++                P  + 
Sbjct: 7   MVDTALIIDTETDQGRDP---RPIQVATINVATGFEWMKYFNS-------GRSISPVVIR 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           + GIT       G+   E      + F +P    +  +N+RFD                 
Sbjct: 57  VHGITDDDV--AGLERFE-----LEQFELPE--YLIGHNVRFDWRVI------------- 94

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                G+    L+  +R      P+   +             + +       + AHDA  
Sbjct: 95  -----GSPSAKLICTVRLARVAFPEWSAYGQSKCIEQLLGKGEASRM----TIAAHDALG 145

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
           D      L     E+                    +      P     GM       + +
Sbjct: 146 DARMCYLLYQACCERLEIAPTDFAAAHAIANKANPVGKM---PFGKHKGMPIKEVPISYV 202

Query: 240 IAPVAWHPRYKDSVI 254
              +      + S+ 
Sbjct: 203 KWMLGNIHNMQPSLY 217


>gi|299142345|ref|ZP_07035477.1| exonuclease [Prevotella oris C735]
 gi|298576067|gb|EFI47941.1| exonuclease [Prevotella oris C735]
          Length = 162

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 45/175 (25%), Gaps = 29/175 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V V R  +  +        P  DY        + 
Sbjct: 1   MKDFAAIDFET--ANNERTSVCSVGLV-VMRDGKIADRFYSLIH-PEPDY-YTYWNTRVH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T         +  E   ++           +  +N  FD+   + +F     D   +S
Sbjct: 56  GLTQADTNHAP-IFPEVWCKVEPLIVN---LPLVAHNKAFDESCLKAVFRCYQMDYPDYS 111

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +                   +     WP          L  +A   G +  N H 
Sbjct: 112 F---------------YCTLAQSRRVWPQGH-----HNLDIIAARCGYDLTNHHH 146


>gi|190892568|ref|YP_001979110.1| DNA polymerase III protein, epsilon subunit [Rhizobium etli CIAT
           652]
 gi|190697847|gb|ACE91932.1| probable DNA polymerase III protein, epsilon subunit [Rhizobium
           etli CIAT 652]
          Length = 196

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 29/170 (17%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
                I D+ET   +             ++    ++   E    +P  D       + I 
Sbjct: 1   MKTIAI-DFET--ANEQRGSACSVGLAWIEEG--RVTRVEERLIRPR-DMRFSGMNIAIH 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+          E     H+  S      +  +N  FD        +R   D YR S
Sbjct: 55  GIRPEHVEDAPE-FPEVMDEFHEDIS---GATMIAHNAAFDFSV-----WRASLDLYRQS 105

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           +            +  + +       WP       S +L  +A   G+  
Sbjct: 106 Y----------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRF 141


>gi|328876923|gb|EGG25286.1| hypothetical protein DFA_03535 [Dictyostelium fasciculatum]
          Length = 369

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 11/101 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +++D ET G +   D+  +         +  I + + F+ K         E+    GI+
Sbjct: 143 ILVFDTETTGLE-FEDQIIEI-------TFINILNGDSFYGKVKPTVPLSSESYCAHGIS 194

Query: 65  PQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDD 103
            ++     +       ++  FF     +  +I  +N+ FD 
Sbjct: 195 LKELDNC-LEWESLQGKLDSFFQQYIDHKIVIIAHNVTFDR 234


>gi|133910502|emb|CAM00615.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 210

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 12/144 (8%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF-IT---GITPQK 67
            G D+  D   + A +  D     +           D+ L   P+ V  +    G+T ++
Sbjct: 2   TGLDLGKDALIEIAALVTDADLNILGEGVDIVIHADDEVLAGMPDVVREMHERSGLT-EE 60

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             R  V  AE  +RI  +            +  N+I  D  +          D++     
Sbjct: 61  VRRSTVTLAEAEQRILDYIRRHVPDGRSAPLAGNSIATDRGFI--ARDMPTLDAHLHYRM 118

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQ 147
              S    L        +     +
Sbjct: 119 VDVSSIKELCRRWFPRIYYAQPEK 142


>gi|330466087|ref|YP_004403830.1| oligoribonuclease [Verrucosispora maris AB-18-032]
 gi|328809058|gb|AEB43230.1| oligoribonuclease [Verrucosispora maris AB-18-032]
          Length = 185

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 10/143 (6%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI-TGIT--PQKA 68
            G D+  D+  + A +  D     +           D  L   PE V    G +   ++ 
Sbjct: 2   TGLDLGSDKLIEVAALVTDPDLNVLGDGVDVVIHADDAALDAMPEIVRTMHGKSGLTEEV 61

Query: 69  LRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            R  V  AE        + +    P T  +  N+I  D  +      R   D++      
Sbjct: 62  RRSTVTLAEAEDMVLDYVSRHVKDPRTAPLCGNSIATDRGFIARDMPR--LDAHLHYRMI 119

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQ 147
             S    L        +     +
Sbjct: 120 DVSSIKELCRRWYPRVYFGQPQK 142


>gi|330800009|ref|XP_003288032.1| hypothetical protein DICPUDRAFT_33426 [Dictyostelium purpureum]
 gi|325081920|gb|EGC35419.1| hypothetical protein DICPUDRAFT_33426 [Dictyostelium purpureum]
          Length = 231

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 56/194 (28%), Gaps = 16/194 (8%)

Query: 5   FVIYDYETFGRDVALDR------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            ++ D+E        D+        +F  V V+ +  +I ST   +CKP           
Sbjct: 33  LIVLDFEAT---CEKDQKFPNQEIIEFPSVIVNTETLEIVSTFREYCKPLIVPKLTAFCT 89

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI  +      +      +R +Q+       +I    I  D          +     
Sbjct: 90  ELTGIKQETVDNADL-FPNVLKRHYQWLEESLPGVIVNGQIINDQICFVTCGDWDLRQCL 148

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD-A 177
           +      N+           +    +     +      S+ + ++     +E    H   
Sbjct: 149 QKQLKLCNNI-----PTPNYFKKWINIKLQFTDFYSKPSYGMTNMLRELNLELEGRHHCG 203

Query: 178 KADVYATLALVWLI 191
            +D      +V  +
Sbjct: 204 LSDSLNIARIVKKM 217


>gi|19920610|ref|NP_608732.1| CG3165 [Drosophila melanogaster]
 gi|7295872|gb|AAF51172.1| CG3165 [Drosophila melanogaster]
 gi|17944281|gb|AAL48034.1| LD40940p [Drosophila melanogaster]
 gi|220955964|gb|ACL90525.1| CG3165-PA [synthetic construct]
          Length = 351

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 28/138 (20%)

Query: 4   HFVIYDYETFGRDVALD---RPAQFAGVRVDRQW--------------------EKIEST 40
            F + D ET       +      +      +                         +   
Sbjct: 19  TFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQQELPAAPRVLHKL 78

Query: 41  EVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNN 98
            V F       + DPEA  ITG++     R+  ++ + ++ I  F     +  C++ +N 
Sbjct: 79  NVLF---QPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNG 135

Query: 99  IRFDDYYSRNIFYRNFYD 116
             FD    R  F +   +
Sbjct: 136 WGFDFPILRQAFEKLNIE 153


>gi|242078527|ref|XP_002444032.1| hypothetical protein SORBIDRAFT_07g006140 [Sorghum bicolor]
 gi|241940382|gb|EES13527.1| hypothetical protein SORBIDRAFT_07g006140 [Sorghum bicolor]
          Length = 283

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 10/139 (7%)

Query: 1   MTNHFVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPE 56
           M + FV+ D+E     G  +      +F  V VD      + +    + +P         
Sbjct: 1   MFDFFVVIDFEATCQEGSVIYPQEIIEFPSVLVDGATGRTLSTFRT-YVRPRHHPRLTDF 59

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIFYR 112
              +TGIT       GV  AE      ++            +                  
Sbjct: 60  CRDLTGITQGDV-DAGVTLAEALDMHDRWLEAHGAKLGKLAVVTWGDWDCRTMLDRECRF 118

Query: 113 NFYDSYRWSWDNGNSRWDL 131
              +   +  D  N R   
Sbjct: 119 KGIEKPHYFDDWINLRLPF 137


>gi|71755417|ref|XP_828623.1| phosphotransferase [Trypanosoma brucei TREU927]
 gi|70834009|gb|EAN79511.1| phosphotransferase, putative [Trypanosoma brucei]
          Length = 540

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 49/198 (24%), Gaps = 15/198 (7%)

Query: 3   NHFVIYDYETFGRDVALDR------PAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDP 55
           + +++ D+E         +        +F  V VD R    I   +  + +P  +     
Sbjct: 32  DTYMVLDFEAT---CERHQRLEVPEVIEFPIVLVDARNGNTISEFQQ-YVRPVVNPQLSQ 87

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +TGIT Q  +       +       +    N      N                  
Sbjct: 88  FCTELTGIT-QSVVDRASTFPDVFTAAMNYLHQNNCGEREINKRYLPVTCGDWDLKTMLP 146

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS---FKLQDLALANGIEHV 172
              +     G +      + R                    S     L D+    G+E  
Sbjct: 147 IQVKACIQQGFTVNVPPSLRRWFNIKQYMQRVLSPGLGQTVSQPIRDLPDMMSVLGLEMK 206

Query: 173 NAHDAKADVYATLALVWL 190
             H +  D    +A V  
Sbjct: 207 GRHHSGIDDCRNIAAVLC 224


>gi|213584452|ref|ZP_03366278.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 216

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 57/249 (22%), Gaps = 51/249 (20%)

Query: 23  AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82
            + A V V      +            D    P+A+ I  IT         +E +     
Sbjct: 1   VEIASVDV-IDGNIVNPMSHL---IRPDRPITPQAMAIHRITEAMVADKPWIE-DVIP-- 53

Query: 83  HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
                  +   + +N            F R         W         +  M+      
Sbjct: 54  ---LYYGSEWYVAHN----------ASFDRRVLPELPGEW---------ICTMKLSRRL- 90

Query: 143 PDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
                WP       +              ++ H A  D Y T     LI   +   +   
Sbjct: 91  -----WPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITA--ALLIDIMRTTGW--- 140

Query: 203 YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA-WHPRYKDSVIGCNLSGD 261
                     + +      P +  +  F   +     ++ VA   P Y   +     +  
Sbjct: 141 --------TAEEMVNITGRPALLTT--FPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMS 190

Query: 262 MRVFQDLDS 270
             +   L  
Sbjct: 191 PELRLTLKH 199


>gi|154509219|ref|ZP_02044861.1| hypothetical protein ACTODO_01740 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798853|gb|EDN81273.1| hypothetical protein ACTODO_01740 [Actinomyces odontolyticus ATCC
           17982]
          Length = 198

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 24/114 (21%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP------- 65
            G DV  D   + A V  D     ++        P  D L  P A  +  +         
Sbjct: 2   TGLDVQRDALIEVAVVVTDGDLTIVD--------PGMDVLITPPAEALDNMNDFVRNMHT 53

Query: 66  -----QKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
                      GV   E + +    I +F       ++  N++  D  +     
Sbjct: 54  SSGLLDDLQTSGVSMEEATEQVLSYIKRFVPQQGKALLAGNSVGTDKMFLEANM 107


>gi|209695293|ref|YP_002263222.1| putative exonuclease [Aliivibrio salmonicida LFI1238]
 gi|208009245|emb|CAQ79508.1| putative exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 184

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 20/132 (15%)

Query: 3   NHFVIYDYET----------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           N  V +D E            G         +     +D Q  ++     ++ KP +D +
Sbjct: 12  NRIVCFDLEMCCWNENGKGRTG------EIIEVGLAEIDLQTGEVVRRAQYYVKPDEDEI 65

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                V +TGITP+K  + G       + + + F   N     +     D+   ++    
Sbjct: 66  -SLFCVELTGITPRKIEKQGRPLEGVLKSMIKNFGGTNKIYAAW---GHDELILKSECEA 121

Query: 113 NFYDSYRWSWDN 124
              +     + N
Sbjct: 122 KGIEFPFVEFIN 133


>gi|152998196|ref|YP_001343031.1| exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
 gi|150839120|gb|ABR73096.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
          Length = 187

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 26/199 (13%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F+  D E  G                      +     +    +D+Y+  P A+ +T
Sbjct: 5   KEIFISVDIEASGPIPGKYSMLSIGACVTSD---PLIQFTCYLKPISDEYI--PAALEVT 59

Query: 62  GITPQKALRDGVVEAEFSRRI----HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           G++ ++  RDG+   E   +               ++   N  FD  +    F+    ++
Sbjct: 60  GLSLEQLNRDGLEPIEAMTQFKTWVESLIEKDENVVLVGFNASFDWSFINYYFHYFLGEN 119

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                               I A     + + + D    S +  ++      E    HDA
Sbjct: 120 PF-----------------GIAALDIKSMYFGASDSSWRSTRSSEIEKVVKPESAGDHDA 162

Query: 178 KADVYATLALVWLIREKKP 196
             D      L  LIR+K  
Sbjct: 163 LHDAIYQAELFSLIRKKLM 181


>gi|120553141|ref|YP_957492.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
 gi|120322990|gb|ABM17305.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 227

 Score = 47.1 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/201 (9%), Positives = 44/201 (21%), Gaps = 31/201 (15%)

Query: 4   HFVIYDYETF---------GRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
             +I D E           G   + D     +       RQ   +++   F  +P    +
Sbjct: 31  TLLIIDLEATCWEHRQAPNGEAQSNDNMEIIEIGCALATRQGRLLDTR-SFLVRPTRHPV 89

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +T IT +             + ++ +        I  +   +D  +       
Sbjct: 90  LSEFCTGLTSITQEMVDEAPA-FPGAIQAMNAWLGDLPDDFIWCSWGNYDRLHLEAQSQE 148

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEH 171
           +                         +        W               LA  +    
Sbjct: 149 HDARP-----------------AVLAFPHLNLKRIWRRTTGQKRKNGFAHALAFHDLAFE 191

Query: 172 VNAHDAKADVYATLALVWLIR 192
            + H    D    + ++  + 
Sbjct: 192 GHHHRGVDDARNMVRVLPYMN 212


>gi|262277819|ref|ZP_06055612.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114]
 gi|262224922|gb|EEY75381.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114]
          Length = 223

 Score = 47.1 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 66/220 (30%), Gaps = 30/220 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V+ D ET G     D+  + A + ++      E   VF      +      A    GI+ 
Sbjct: 4   VLLDTETTGLSSVNDKIIEIACIEIEDHIPTGEKFHVF---LNPEMEISQGAYDTHGISK 60

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          + ++   +F        +  +N  FD  +                    
Sbjct: 61  EFLKNKPK-FNDVAKDFTKFIDGKK---LVIHNAEFDLAFLNKELKEVGEKQISKDN--- 113

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAHDAKADVYA 183
               D L++ R  +  + +               L  L     I++     H A  D   
Sbjct: 114 --IVDTLNIAREKFPGAQN--------------SLDALCKRFKIDNSRRQKHSALLDCEL 157

Query: 184 TLALVWLIREKKPKLFEYLYDYR--NKNQLRKLIDIQNMT 221
              +   + EKK   FE+  + +  +   ++ + D + + 
Sbjct: 158 LAKVYIELFEKKEPTFEFDLNAQDESIKNVKNIKDRKQII 197


>gi|148244632|ref|YP_001219326.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA]
 gi|146326459|dbj|BAF61602.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA]
          Length = 193

 Score = 47.1 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 59/199 (29%), Gaps = 27/199 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFA--GVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +     + +D+      +  + F  +P    + +P A+    
Sbjct: 13  VVIDIETGGFNEKTDAMLEICTIIIGIDKMNNLYPKKPQHFHIEPFKGSILEPSAIKFNS 72

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I      R  V E +  ++I+               I+  +N  FD  + R    R    
Sbjct: 73  IDVDNPFRMAVKEVDAIKQIYTKVYTELKQKDCTRAILVGHNAFFDLGFLRAATNRCKL- 131

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  +   ++  LD +        + +   +                   +   AH 
Sbjct: 132 ------KSPFHQFSTLDTVSLSALCYGETVLAKAIRKA-----------DIEWDDTCAHS 174

Query: 177 AKADVYATLALVWLIREKK 195
           A  D   T  L   +   +
Sbjct: 175 ALYDTQKTAELFCKVFNTQ 193


>gi|313905505|ref|ZP_07838869.1| Exonuclease RNase T and DNA polymerase III [Eubacterium
           cellulosolvens 6]
 gi|313469689|gb|EFR65027.1| Exonuclease RNase T and DNA polymerase III [Eubacterium
           cellulosolvens 6]
          Length = 320

 Score = 47.1 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 4   HFVIYDYETF----GRDVALDR----PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           +++++D E      G+     R      +   V++D +   +++ +    +P      + 
Sbjct: 2   NYIVFDLEWNQSPHGKSRENPRLPFEIIEIGAVKLDHERNIVDTWQ-KVIRPTVYKTLNY 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               I  I  ++    G    +    + +F +      I       D    +       +
Sbjct: 61  RTREIVHIDKKEL-DAGTYFPDA---VREFLTWAGHDSIFCTWGTVDLPELQRNMK---F 113

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174
            +           +D+  +    Y            +D  +   L+       +E   A 
Sbjct: 114 YNILKLLKGPMHYYDVQKLFAVQY------------EDMNSRKSLEYGIDYLKLEKQEAF 161

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231
           H A  D   T  +   I       ++ +  Y+N     + I +       ++S  F 
Sbjct: 162 HRALVDAKYTAQIFQTIDLDVMLAYDSIDVYQNPKSKTEEIHMVYNGYTKYISREFH 218


>gi|226483657|emb|CAX74129.1| three prime repair exonuclease 1 [Schistosoma japonicum]
          Length = 234

 Score = 47.1 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 41/151 (27%), Gaps = 10/151 (6%)

Query: 4   HFVIYDYETFGR-DVALD-RPAQFAGVRVDRQW--EKIEST---EVFFCKPADDYLPDPE 56
             V++D ET G      +    +   +   R       +                     
Sbjct: 16  TLVLFDVETTGLPSANFNPEITELCMLACSRFGLENATDEPRVENKLTLCFNPTRTISSI 75

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNF 114
           A  I+G+           ++     I  F +  ++  C + +N +RFD    R       
Sbjct: 76  ASKISGLNSDNLFHQKDFDSSAVDLIQLFLNRLDSPVCFVAHNGLRFDFPLLRAQIMSVK 135

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDG 145
            + Y+ +           D +     F+   
Sbjct: 136 GNDYKLNDSTNAPIICT-DTLHLFREFASHL 165


>gi|229024985|ref|ZP_04181414.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1272]
 gi|228736320|gb|EEL86886.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH1272]
          Length = 208

 Score = 47.1 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 48/182 (26%), Gaps = 21/182 (11%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V++D    + I                      +TGIT +  +       +F 
Sbjct: 18  EIVDIGAVKIDASTMKIIGEFSEL---VKPSAPLTRHTTKLTGITKKDLIG----VEKFP 70

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           + I +F        I  +  + D  +  +    +  +          SR+D+   +   Y
Sbjct: 71  QIIEKFIKFIGEDFIFISWGKEDYRFLSHDCTLHGVECPCME---KESRFDVQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
                        +   S +     L    E    H A AD   T  +      ++    
Sbjct: 128 ---------EELFEHTPSLQFAVEQLDLTWE-GRQHRAFADAENTANIFLKAYSERDINK 177

Query: 200 EY 201
            Y
Sbjct: 178 RY 179


>gi|192360456|ref|YP_001981170.1| hypothetical protein CJA_0650 [Cellvibrio japonicus Ueda107]
 gi|190686621|gb|ACE84299.1| conserved hypothetical protein [Cellvibrio japonicus Ueda107]
          Length = 181

 Score = 47.1 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 7  IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
          I D E  G   A   P +   V         +          D      +A  I GI  +
Sbjct: 9  IIDIEASGFG-AHSYPIEIGAVNARG-----DRYCALIQPQPDWTHWSEQAQRIHGIARE 62

Query: 67 KALRDGVVEAEFSRRIHQFF 86
           AL  G    +    ++QF 
Sbjct: 63 LALNSGKPARQVCAELNQFL 82


>gi|306829427|ref|ZP_07462617.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           mitis ATCC 6249]
 gi|304428513|gb|EFM31603.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           mitis ATCC 6249]
          Length = 197

 Score = 46.7 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 60/192 (31%), Gaps = 28/192 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           ++ +D E F +   +    Q + VR  +  ++  + + +    A           +TGIT
Sbjct: 7   YIAFDLE-FNQHDGVTHLIQVSAVRF-QDGQESAAFDSYVYTTAP---LKSFINGLTGIT 61

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            +       VE +  +    F       I+GYN  + D                      
Sbjct: 62  AETLKDAPKVE-QVLKDFQAFVGKSP--IVGYNAAKSDLPILLEHGLDY----------R 108

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
              + DL D      +    GI          + KLQ +A   G +   +H++  D   T
Sbjct: 109 DQYKVDLYDEAFERRSSDLHGIA---------NLKLQTVANFLGFK-GQSHNSLEDARMT 158

Query: 185 LALVWLIREKKP 196
             +     E   
Sbjct: 159 ARVYEAFLESDE 170


>gi|268577619|ref|XP_002643792.1| Hypothetical protein CBG02003 [Caenorhabditis briggsae]
 gi|187037744|emb|CAP23181.1| hypothetical protein CBG_02003 [Caenorhabditis briggsae AF16]
          Length = 299

 Score = 46.7 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 57/198 (28%), Gaps = 14/198 (7%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEA 57
           ++ +I D+E        D      QF+   ++ + + I     F  + KP  +       
Sbjct: 10  DNLLILDFEATCEKDNHDYPSEIIQFSVAVLNTREKIIREDVSFNKYVKPIINPKLTDFC 69

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGI  Q  +       E   +   +          +N       +        +  +
Sbjct: 70  AELTGI-DQDTIDKADTFPEVYDQFTAWLEE-------HNFQEKRYAFVCESRQDVWRRA 121

Query: 118 YRWSWDNGNS-RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +     N           +   + +  D      +D    SF  +  A  +      AH+
Sbjct: 122 HYQFLLNKQPLPAIFRQWVNLSFHYREDMRLAQRQDTVHQSFIEKMSAFYDIPFVGQAHN 181

Query: 177 AKADVYATLALVWLIREK 194
           A ++      +   I + 
Sbjct: 182 AMSECSFLAKVTKHILDN 199


>gi|158317263|ref|YP_001509771.1| oligoribonuclease [Frankia sp. EAN1pec]
 gi|158112668|gb|ABW14865.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
          Length = 210

 Score = 46.7 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 41/161 (25%), Gaps = 34/161 (21%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +  V  D E  G D   D   + A +  D +   ++             L  P+A    
Sbjct: 13  MDRLVWIDCEMTGLDAGSDLLLEVACLVTDSELTVLDEGIDL-------VLAAPDAAL-- 63

Query: 62  GITPQKA-------LRDGVVEA-------------EFSRRIHQFFSVPNTCIIGYNNIRF 101
               Q            G+ EA             +    I +F        +  N+I  
Sbjct: 64  ---DQMLPVVREMHETSGLTEAVRGSDLKLDEAEEQLLSYIRRFVPEARKAPLCGNSIAT 120

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
           D  +     Y    D++        S    L       A+ 
Sbjct: 121 DRTFI--ARYLPQLDTFLHYRMIDVSSIKELARRWYPRAYY 159


>gi|194745839|ref|XP_001955392.1| GF18739 [Drosophila ananassae]
 gi|190628429|gb|EDV43953.1| GF18739 [Drosophila ananassae]
          Length = 187

 Score = 46.7 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 12/35 (34%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           V  D E  G D   D+  + A V  D+       
Sbjct: 14 IVWMDLEMTGLDFEKDKILELACVITDKDLNVKSE 48


>gi|268577615|ref|XP_002643790.1| Hypothetical protein CBG02001 [Caenorhabditis briggsae]
 gi|187037742|emb|CAP23179.1| hypothetical protein CBG_02001 [Caenorhabditis briggsae AF16]
          Length = 299

 Score = 46.7 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 51/195 (26%), Gaps = 14/195 (7%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEA 57
           +  +I D+E        D      QF+   ++ + + I     F         P      
Sbjct: 10  DDLLILDFEATCEKDNYDYPPEIIQFSVAVLNTREKIIREDVSFNKYVRPVINPQLTDFC 69

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGI  Q  +       E   +   + +        +N       +  +     +  +
Sbjct: 70  AELTGI-NQDTIDKADTFPEVYDQFTAWLNK-------HNIQEKRFAFVCDSRQDMWRFA 121

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA-TSFKLQDLALANGIEHVNAHD 176
                 N      +      +        +   + D    SF  +     N   + + H+
Sbjct: 122 QYQFLLNKQPLPTIFRQWVNLGHLYEQDFRKAQQQDIWGPSFIEKMSGFYNIPFNGHNHN 181

Query: 177 AKADVYATLALVWLI 191
           A  +      +   +
Sbjct: 182 AMDECAFLAKVTKRV 196


>gi|291520945|emb|CBK79238.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Coprococcus catus GD/7]
          Length = 218

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 49/173 (28%), Gaps = 18/173 (10%)

Query: 23  AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82
            Q   V ++ +++++ +   +     +  + DP    +TGI   +  +   +  E    +
Sbjct: 29  IQIGAVLLNEEFKQVGTIREYVH--PEHGVIDPFIEKLTGIKNSQVKKAPCI-GEALVHM 85

Query: 83  HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
             +                D  Y    +  +  +             + +D       + 
Sbjct: 86  IDWI--------------GDREYKVYTWSESDRNQLLHEITAKQITDESVDAFMMEDRWV 131

Query: 143 PDGIQWPSRDDGATSFKL-QDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
              + +  R        L + L  A+       HD   D   T  L+  +   
Sbjct: 132 DYQMVFSQRFQLTRRISLEEALGRADIDPKGKFHDGMDDAVNTGLLIEKLEMN 184


>gi|118586342|ref|ZP_01543794.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni
           ATCC BAA-1163]
 gi|118433233|gb|EAV39947.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni
           ATCC BAA-1163]
          Length = 177

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 28/187 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +             V     +I     ++     +         I G+
Sbjct: 2   NFLAMDFETASSEPWSA--VSLGLTIVRD--NQIAQ--NWYSLIKPETSFSYWNTEINGL 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    L       E    I          ++G+N               N        + 
Sbjct: 56  TADDVLDSPK-FPEVWADIKN-LYDDYPVVVGHNIRFD----------NNVLKQTLKYYG 103

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R+  LD +     F            G  + KL  +    G+   + H+A  D  A
Sbjct: 104 LKTPRYLSLDTVYLSRKF----------QPGMVNHKLDTVVSDLGLFLEHHHNASDDAQA 153

Query: 184 TLALVWL 190
           +  ++  
Sbjct: 154 SAQILIY 160


>gi|115931228|ref|XP_001176905.1| PREDICTED: similar to three prime repair exonuclease 1, putative
           [Strongylocentrotus purpuratus]
          Length = 534

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 36/143 (25%)

Query: 3   NHFVIYDYETFG-RDVALDRPAQFAGVRVDRQW--------------------------- 34
           N FV  D+ET         +  + + + V+R                             
Sbjct: 120 NSFVFLDFETSHLLSKDHPKIIELSLIAVNRNGLLNSDVHTSLNCARKGNFTFDLSKVSL 179

Query: 35  -EKIESTEVFFCKPADDYLPDPEAVFITGITPQKA-LRDGVVEAE-FSRRIHQFFSV--P 89
              I+        P       P++  IT +  +       +   E     I  F S    
Sbjct: 180 PRIIDK-LTLCVDPRKST--SPQSARITKLDKRNLDKNKKLPFDEDVICMIKLFLSRQEA 236

Query: 90  NTCIIGYNNIRFDDYYSRNIFYR 112
             C++ +N +RFD    R+   R
Sbjct: 237 PVCLVAHNGLRFDFAILRSELSR 259


>gi|291236484|ref|XP_002738169.1| PREDICTED: CG7896-like [Saccoglossus kowalevskii]
          Length = 1408

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 52/189 (27%), Gaps = 19/189 (10%)

Query: 5    FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             V+ DYE           +    +F  V ++ +  K+E     FC+P            +
Sbjct: 1089 LVVIDYEATCEKENPTDYVHEIIEFPVVLINSKTLKMEKEFRTFCRPVLHPKLSDFCTEL 1148

Query: 61   TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            TGIT  +     +  ++   +   +           N +  +  ++              
Sbjct: 1149 TGITQAQVDGAPL-FSDVLDQFENWLEE--------NKLGSEYSFAI----VTDGPWDII 1195

Query: 121  SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKA 179
             + N       +        +  +  +  S        KL  +    G+      H   A
Sbjct: 1196 CFLNVQCVLSQISFPEYARRW-INIRKLFSNYYHTRRLKLTLMLDHLGMTFEGRQHSGIA 1254

Query: 180  DVYATLALV 188
            D      ++
Sbjct: 1255 DCRNIARIM 1263


>gi|291529682|emb|CBK95268.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Eubacterium rectale M104/1]
          Length = 269

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 2/106 (1%)

Query: 10  YETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKAL 69
            ET G D   D       ++   + + +   E +     +     PE   IT IT +  +
Sbjct: 33  VETTGLDKFSDELINIHALKCHFEDKILIEDEEYNRYIRNTKALTPELEKITKITNEFLM 92

Query: 70  RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
                 +      + +    +  IIG+N            F   + 
Sbjct: 93  DK-EDLSTVMEDFYNYIGE-DANIIGFNTSFLLPMLKYAGFETGWM 136


>gi|146092931|ref|XP_001466577.1| hypothetical protein [Leishmania infantum]
 gi|134070940|emb|CAM69616.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322500705|emb|CBZ35782.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 405

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 53/190 (27%), Gaps = 19/190 (10%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEAV 58
            ++ D E       R+       +  GV +D +  +++    F             P   
Sbjct: 76  IIVVDVEATCEQNSRNYP-HEVIEIPGVLIDVRTGQVDRARSFHTFVKPWRNSRLTPFCT 134

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT Q+ +       E  +   +++    T   G   I   D       + + +   
Sbjct: 135 QLTGIT-QEVVDAAPSITEAIQLFEKWYRE--TIPRGAKTIFAADGPWDFKNFIHEHHIL 191

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
           R      +  ++ LD+          G+                L   N       H+  
Sbjct: 192 RDHVGFPSIFYEYLDIRTTFAHHLNHGVPIKLDAM---------LRKMNLRFDGRPHNGF 242

Query: 179 ADVYATLALV 188
            D Y    L 
Sbjct: 243 DDAYNIARLA 252


>gi|319900813|ref|YP_004160541.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
 gi|319415844|gb|ADV42955.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
          Length = 165

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 46/201 (22%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVR---------VDRQWEKIESTEVFFCKPADDYL 52
             +F   D+ET     A ++       R         V +  E  ++      +P  +Y 
Sbjct: 1   MENFAAIDFET-----ANEQ-------RCSVCSVGVVVVKDGEMTDNYYSLI-RPEPEY- 46

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  + G+T     +  V   +  R I           +  +N  FD+         
Sbjct: 47  YTYWTTRVHGLTLADTAQAPV-FPDVWREISPRIE---GLPLVAHNKAFDE--------- 93

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
           +   +   ++      +D    ++A                G   ++L  +A   G    
Sbjct: 94  SCLKAVFRTYGMDYPDYDFYCTLQASRRV----------IKGLPDYQLHTVASRCGYRLE 143

Query: 173 NAHDAKADVYATLALVWLIRE 193
             H A AD  A   +  ++ +
Sbjct: 144 QHHHALADAEACAWIARMVFD 164


>gi|119502786|ref|ZP_01624871.1| oligoribonuclease [marine gamma proteobacterium HTCC2080]
 gi|119461132|gb|EAW42222.1| oligoribonuclease [marine gamma proteobacterium HTCC2080]
          Length = 182

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 1  MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          M++  + +  D E  G      R  + A +  D    ++  
Sbjct: 1  MSDAQNLIWVDLEMTGLIPEQHRVIEMATIITDSDLNELAQ 41


>gi|115931779|ref|XP_001175832.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 268

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 53/197 (26%), Gaps = 16/197 (8%)

Query: 5   FVIYDYETFGRDVALDRP---AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           F++ D+E    D     P    +F  ++V  +  + E+T   + +P    +       +T
Sbjct: 79  FLVLDFEATCLDNERIEPQEVIEFPVLKVSGKTFETEATFHQYVEPQVHGV-GEFCTRLT 137

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP          A+  +  H +                D        +    D    +
Sbjct: 138 GITPDMVKGQP-TFADTLKLFHVWMEKEGLV---------DPEVKF--IFVTCGDWDLKT 185

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                     L        +      + +         +Q L   N       H    D 
Sbjct: 186 MFPSQCAHFELPYHSYFRRWLNIKKAFATVTSHYPKGMMQMLERLNIPHVGRHHSGIDDC 245

Query: 182 YATLALVWLIREKKPKL 198
                ++  +  K+ K 
Sbjct: 246 RNIANILQALALKRYKF 262


>gi|332669891|ref|YP_004452899.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC
           484]
 gi|332338929|gb|AEE45512.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC
           484]
          Length = 223

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 11/115 (9%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEAV 58
              V  D E  G D+  D   + A V  D     +        KP    L        A+
Sbjct: 18  ERIVWIDCEMTGLDLGADALVEVAAVVTDSDLRVLGGGVDVVVKPPAAALEQMNDFVRAM 77

Query: 59  FIT-GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRN 108
             T G+  +  L  G    +  +++  +        +   +  N++  D  +   
Sbjct: 78  HTTSGLLDE--LDAGTTLEDAQQQVLDYVRTWVPEPSKAPLAGNSVGTDKAFLDR 130


>gi|119486052|ref|ZP_01620114.1| Exonuclease [Lyngbya sp. PCC 8106]
 gi|119456827|gb|EAW37955.1| Exonuclease [Lyngbya sp. PCC 8106]
          Length = 191

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/128 (9%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 21  RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
              +   V V+ ++   +   + F  KP    +       +T IT  +  +      E  
Sbjct: 30  EIIEIGAVMVETKKLTSVNEFQTFI-KPIRHPILTKFCQQLTSITQAQVEQAPH-YPEAI 87

Query: 80  RRIHQFFSVPNTCIIGY--NNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRA 137
           + +  + S  +   + +          + ++  + +      +   N    +     ++ 
Sbjct: 88  KNLKNWLSQYSDSHLIWGSWGDYDRRQFDQDSQFHHVSFPIGYPHINLKKMFSTSQGLKG 147

Query: 138 IYAFSPDG 145
            Y  +   
Sbjct: 148 RYGMADAL 155


>gi|257094889|ref|YP_003168530.1| Exonuclease RNase T and DNA polymerase III [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047413|gb|ACV36601.1| Exonuclease RNase T and DNA polymerase III [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 181

 Score = 46.7 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          NH V  D E  G D   +R  + A V  D Q   +  
Sbjct: 6  NHLVWLDMEMTGLDPERERIIELAIVITDGQLATLAE 42


>gi|209154444|gb|ACI33454.1| Histone mRNA 3-exonuclease 1 [Salmo salar]
          Length = 346

 Score = 46.7 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 48/194 (24%), Gaps = 15/194 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             + D+E                +F  V ++    +IE T   + +P  +       V +
Sbjct: 127 ICVVDFEATCEQDNPADFTHEIIEFPMVLLNTHTLEIEDTFQEYVRPEVNTQLSEFCVKL 186

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT +          +   ++  +              ++      +  +         
Sbjct: 187 TGITQKMVDDAD-TFPDVLEQVVLWLQEKEL------GTKYKYTLLTDGSWDMSKFMNTQ 239

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
              N             I     +  + P      +S  L+ L L         H    D
Sbjct: 240 CRLNSLRYPQFAKKWINIKKLYGNFYKVPRTQTKLSSM-LEKLGLKY---EGRPHSGLDD 295

Query: 181 VYATLALVWLIREK 194
                 +   + + 
Sbjct: 296 SRNIAHIAMRMLQD 309


>gi|19113491|ref|NP_596699.1| RNA exonuclease [Schizosaccharomyces pombe 972h-]
 gi|7227906|sp|O94626|ORN_SCHPO RecName: Full=Probable oligoribonuclease
 gi|4456822|emb|CAB37438.1| RNA exonuclease [Schizosaccharomyces pombe]
          Length = 180

 Score = 46.7 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 8/128 (6%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
           +    V  D E  G +V      + A +  D     +E       K  +  L   +   +
Sbjct: 4   LKQPLVWIDCEMTGLEVGKHVLMEVAAIITDGNLRPVEEKFDAVIKLDEKQLSEMNDWCI 63

Query: 59  FITGIT--PQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
              G +   ++  +  +     E +    I ++       +I  N++  D  +      +
Sbjct: 64  EQHGKSGLTERCRQSNLTVKDVENQLLAYIKKYIPKKREALIAGNSVHADVRFLSVEMPK 123

Query: 113 NFYDSYRW 120
                +  
Sbjct: 124 IIEHLHYR 131


>gi|145295978|ref|YP_001138799.1| hypothetical protein cgR_1902 [Corynebacterium glutamicum R]
 gi|57158136|dbj|BAD84105.1| probable oligoribonuclease [Corynebacterium glutamicum]
 gi|140845898|dbj|BAF54897.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 219

 Score = 46.7 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 43/208 (20%), Gaps = 37/208 (17%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M     F+  D ET G D       +   +  D     I +                   
Sbjct: 1   MKPKPAFIGLDLETTGLDAHSGVILEVGIIIFDDDLMPIAARSWL--------------- 45

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY----YSRNIFYRNF 114
                T +   ++ +V A     +H+   +      G+                    N 
Sbjct: 46  -----TNELVEKESIVSAPVVEVMHEESGLWEDLKTGHTQPLRQVEAEASAWILEAGANK 100

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL--------- 165
                 S     +  D                         + +   ++           
Sbjct: 101 LPMLGSSVTFDRTWLDHHMPQLHRMFHYRSVDATSVLLASTSLYDFININDQQTLLVLDM 160

Query: 166 --ANGIEHVNAHDAKADVYATLALVWLI 191
                   +  H A  D+  + ALV   
Sbjct: 161 LEHLKRWDLKPHRALYDLCQSAALVKAT 188


>gi|329663381|ref|NP_001192506.1| ERI1 exoribonuclease 2 [Bos taurus]
 gi|297490163|ref|XP_002698031.1| PREDICTED: ERI1 exoribonuclease family member 2 [Bos taurus]
 gi|296473339|gb|DAA15454.1| ERI1 exoribonuclease family member 2 [Bos taurus]
          Length = 689

 Score = 46.7 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 15/225 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            +I D+E+     G+        +F  V ++    +IES    + +P +  +     V +
Sbjct: 37  LIIIDFESTCWNDGKRHRSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPILSEFCVEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + I +             +           F      
Sbjct: 97  TGIKQAQV-DEGVPLKICLSQFCKWIQKIQQQKKIIFATTVSDISTSEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYA--FSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
                 +    R  LL  +              +  R     S  LQ++ +         
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWIDLRVTYKIFYRRKPKGLSGALQEVGMQF---LGRE 212

Query: 175 HDAKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
           H    D   T  L   +IR+          +  +  ++  +    
Sbjct: 213 HFGLDDSRNTALLAWKMIRDGCLMKITRSLNKVSTKRIPNIFTRN 257


>gi|94500476|ref|ZP_01307008.1| hypothetical protein RED65_16666 [Oceanobacter sp. RED65]
 gi|94427511|gb|EAT12489.1| hypothetical protein RED65_16666 [Oceanobacter sp. RED65]
          Length = 162

 Score = 46.7 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 7  IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
          I D E  G       P +      D               P        EA  I GI+ +
Sbjct: 6  IIDLEASGFG-RGSYPIEVGVALSDGSI-----HSTLIKPPESWVHWSDEAQAIHGISRE 59

Query: 67 KALRDGVVEAEFSRRIHQFF 86
          +   +G    E +  ++   
Sbjct: 60 QLNEEGKSPREVAMFLNNLL 79


>gi|218132763|ref|ZP_03461567.1| hypothetical protein BACPEC_00624 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992489|gb|EEC58492.1| hypothetical protein BACPEC_00624 [Bacteroides pectinophilus ATCC
           43243]
          Length = 318

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 57/214 (26%), Gaps = 41/214 (19%)

Query: 4   HFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           ++++ D E      G++           +   V++D  +  +   +    +P        
Sbjct: 2   NYIVMDLEWNQCPKGKEFENKKLPFEIIEIGAVKLDSSFNVVGEFD-RLIRPQLY----- 55

Query: 56  EAVFITGITPQKA------LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
               +  I  +        L  G    E      +                 D  +    
Sbjct: 56  --TKLHHIVKELLDVSSEELLAGGAFPEVMEEFLE-------------WCDEDYMFCIWG 100

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG- 168
                      ++    +++ +  +   I  F          +DG     LQ +  A   
Sbjct: 101 SGDLTELQRNMNFFGVENKFPMPFIFYDIQKFYSILY-----EDGKIRRSLQSVIEAMHL 155

Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
            E    H A  D   T  ++ ++  +  K +  +
Sbjct: 156 SETEEFHRAINDARYTAHVMQMMDIEGVKGYYSI 189


>gi|240273598|gb|EER37118.1| oligoribonuclease [Ajellomyces capsulatus H143]
          Length = 189

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 28/131 (21%), Gaps = 21/131 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWE---------KIESTEVFFCKPADDYLPDP 55
            V  D E  G +   D+  Q      D              I   E       D  +   
Sbjct: 10  LVWIDCEMTGLNHRTDKILQICCFITDADLNLLEPTGFEAVIHHPESVLDNMDDWCI--- 66

Query: 56  EAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNI 109
                 G +                +  +  +         T ++  N++  D  +    
Sbjct: 67  ---KTHGQSGLTAAVSASTTTPTAAAEGLLAYIKKHVPRRGTGLLAGNSVHADKEFLACK 123

Query: 110 FYRNFYDSYRW 120
            Y        +
Sbjct: 124 PYSMILKWLHY 134


>gi|322374397|ref|ZP_08048911.1| exonuclease [Streptococcus sp. C300]
 gi|321279897|gb|EFX56936.1| exonuclease [Streptococcus sp. C300]
          Length = 197

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 36/196 (18%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +D E    +         Q + VR  +  ++  + + +    A           +TG
Sbjct: 7   YIAFDLE---FNQHEGVTHLIQVSAVRF-QDGQEYAAFDSYVYTTAPLKS---FINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF--YRNFYDSYRW 120
           IT +       VE +  +    F       I+GYN  + D          YR+ Y    +
Sbjct: 60  ITAETLKDAPKVE-QVLKDFQAFVGDLP--IVGYNAAKSDLPILLEHGIDYRDQYKVDLY 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL  +                      + KLQ +A   G  H  +H++  D
Sbjct: 117 EEAFERRSSDLHGIA---------------------NLKLQTVANFLGF-HGKSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYEAFLESDE 170


>gi|320586054|gb|EFW98733.1| RNA exonuclease [Grosmannia clavigera kw1407]
          Length = 205

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
           V  D E  G D   D+  +   +  D     +
Sbjct: 8  LVWIDCEMTGLDPDSDQILEIYCLVTDGHLRPV 40


>gi|300857574|ref|YP_003782557.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685028|gb|ADK27950.1| DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 348

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/110 (10%), Positives = 32/110 (29%), Gaps = 9/110 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V    +T G   +  R      V      E+ +              P P    + G++
Sbjct: 22  YVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAV---INPGDNPGPF--HLHGLS 76

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            ++    G   +   + + +     +   +  +N  +   +  +   R  
Sbjct: 77  REEIA-QGKKFSHILKPLGKLI---DGRTLILHNTPYTWGFLVSESRRTM 122


>gi|258544438|ref|ZP_05704672.1| oligoribonuclease [Cardiobacterium hominis ATCC 15826]
 gi|258520327|gb|EEV89186.1| oligoribonuclease [Cardiobacterium hominis ATCC 15826]
          Length = 178

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           ++ V  D E  G D   D   + A +  D Q   +  
Sbjct: 4  PDNLVWIDLEMTGLDSQRDHILEIATLITDAQLNILAE 41


>gi|116491633|ref|YP_811177.1| DNA polymerase III, epsilon subunit or related 3'-5' exonuclease
           [Oenococcus oeni PSU-1]
 gi|116092358|gb|ABJ57512.1| DNA polymerase III, epsilon subunit-like 3'-5' exonuclease
           [Oenococcus oeni PSU-1]
          Length = 177

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 54/187 (28%), Gaps = 28/187 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +             V     +I     ++     +         I G+
Sbjct: 2   NFLAMDFETASSEPWSA--VSLGLTIVRD--NQIAQ--NWYSLIKPETSFSYWNTEINGL 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    L       E    I   +      ++  +N+RFD+   +                
Sbjct: 56  TADDVLDSPK-FPEVWADIKNLYDDYP--VVVGHNVRFDNNVLKQTLKYYGL-------- 104

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R+  LD +     F            G  + KL  +    G+   + H+A  D  A
Sbjct: 105 -KTPRYLSLDTVSLPRKF----------QPGMVNHKLDTVVSDLGLFLEHHHNASDDAQA 153

Query: 184 TLALVWL 190
           +  ++  
Sbjct: 154 SAQILIY 160


>gi|307149737|ref|YP_003890780.1| exonuclease RNase T/DNA polymerase III [Cyanothece sp. PCC 7822]
 gi|306986537|gb|ADN18415.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
          Length = 293

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 50/188 (26%), Gaps = 26/188 (13%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G +   ++  +   V      + + S          D +   EA  I  I P
Sbjct: 8   LIIDTETTG-NKDNNQVLEVGAVLYSIPNQCMLSCGSSLIAVDADTIN--EAYLINKIDP 64

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                    +  F   +    +  +  ++  +N  FD    + + +   +D         
Sbjct: 65  LATQICPQQQNYFLNWLQA--AYASADVVVAHNANFDKDVVKKLTWAQKWDKIWLCSLKD 122

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
              +                              L  L+   GI    +H A  D     
Sbjct: 123 FELFP---------------------KQYNGKRDLISLSQFYGIGISCSHRAIDDCLLLK 161

Query: 186 ALVWLIRE 193
            +   ++ 
Sbjct: 162 EVFNRVQN 169


>gi|281356111|ref|ZP_06242604.1| Exonuclease RNase T and DNA polymerase III [Victivallis vadensis
           ATCC BAA-548]
 gi|281317480|gb|EFB01501.1| Exonuclease RNase T and DNA polymerase III [Victivallis vadensis
           ATCC BAA-548]
          Length = 205

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 42/167 (25%), Gaps = 26/167 (15%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D+ET   D              D       S E                + + GIT
Sbjct: 2   ILALDFETANSDP--GSVCAVGLAWFDGA-RITGSWESLIRPHRSCRWFSRLNIAVHGIT 58

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+   +      +    +   F+     ++  +N  FD            +         
Sbjct: 59  PEMVAQAPE-WGDVWPELAPHFA---GSMVIAHNAAFDVPVLLRTLELYGFAP------- 107

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
               +D     ++          WP  +    + KL  ++   G E 
Sbjct: 108 --PEFDFFCTCKSARRV------WPGLE----NHKLNTVSDFLGWEF 142


>gi|73958918|ref|XP_851106.1| PREDICTED: similar to CG6393-PA, isoform A [Canis familiaris]
          Length = 279

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 12/199 (6%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+     G+        +F  V ++    +IES    + +P +  +     + +
Sbjct: 37  LIVIDFESTCWNDGKHHQSQEIIEFPAVLLNTSTGEIESEFHAYVQPQEHPVLSEFCMEL 96

Query: 61  TGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           TGI   +   +GV      ++F + I +             +   +       F      
Sbjct: 97  TGIKQAQV-DEGVPLRICLSQFCKWIQKIQQQKKIIFATGISDLSNSEVKLCAFVTWSDW 155

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
                 +    R  LL  +        D               L       GIE     H
Sbjct: 156 DLGVCLEYECKRKQLLKPVFLNSWI--DLRVTYKIFYRRKPKGLSGALQEVGIEFLGQEH 213

Query: 176 DAKADVYATLALVWLIREK 194
               D   T  L W +   
Sbjct: 214 SGLDDSRNTAMLAWKMIRD 232


>gi|260220806|emb|CBA28738.1| Oligoribonuclease [Curvibacter putative symbiont of Hydra
          magnipapillata]
          Length = 193

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQW 34
           + V  D E  G +   DR  + A +  D   
Sbjct: 17 KNLVWLDCEMTGLEPETDRLLEIAVIVTDPHL 48


>gi|323143315|ref|ZP_08078006.1| ribonuclease T [Succinatimonas hippei YIT 12066]
 gi|322416932|gb|EFY07575.1| ribonuclease T [Succinatimonas hippei YIT 12066]
          Length = 251

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 10/128 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   + A + +        + +       +P  +   +P  +   G
Sbjct: 33  VVVDVETAGFNPETDALLEVAMMTMTMDDNGYLQPDEIMSANIRPFPNSNIEPSNIAFLG 92

Query: 63  ITPQK----ALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115
           I P         + V      + I +           ++G+N      +        N+ 
Sbjct: 93  IDPFDESRNLQDERVAVLPMFKAISKKMKKEGCTRAILVGHNGFFDLSFIHALAKRLNYK 152

Query: 116 DSYRWSWD 123
                 + 
Sbjct: 153 RCPFHQFT 160


>gi|159904464|ref|YP_001548126.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6]
 gi|159885957|gb|ABX00894.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6]
          Length = 153

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 6/25 (24%), Positives = 10/25 (40%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFA 26
            + ++ D ET G +   DR     
Sbjct: 1  MENIIVLDTETTGLNPLTDRIITIG 25


>gi|124268531|ref|YP_001022535.1| exonuclease [Methylibium petroleiphilum PM1]
 gi|124261306|gb|ABM96300.1| exonuclease [Methylibium petroleiphilum PM1]
          Length = 233

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 36/196 (18%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV-------DRQWE----KIESTEVFFCKPA--DDYL 52
           ++ D E+ G D   D     A V V       +R        +        +P+      
Sbjct: 29  IVADVESGGLDPRRDPLLAIAAVGVHFAPVQGERGGRRPRIVLGDRFELLLRPSGAPSAS 88

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           PD   + + GI    A R G+  AE  +    +       ++G+++      + R +  R
Sbjct: 89  PDKANILVHGIGIG-AQRAGLDPAEALQAWESYIGRSP--LVGFHSA-----FDRTLIER 140

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
              D+   + DN     + L  +                        L D    +GI  +
Sbjct: 141 AGRDALGRAPDNPWLDLEHLAAV---------------LHREPRQRSLDDWLAHHGITCL 185

Query: 173 NAHDAKADVYATLALV 188
             H A AD  AT  L+
Sbjct: 186 ARHQASADALATAQLL 201


>gi|255729548|ref|XP_002549699.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132768|gb|EER32325.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 765

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 46/179 (25%), Gaps = 12/179 (6%)

Query: 1   MTNHFVIY------DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M++ ++I       D  T           +FA   +D    +  S +    +P +     
Sbjct: 1   MSDIYIIVHLATTCDDSTTYVTKDSSELIEFAWETLDTSTLETLSKDSILVRPIN-TPIT 59

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           P    +  I+ +     G    +   +  Q+        I      F          R  
Sbjct: 60  PYCSRLHKISWEHVKNAG-SFKDAIAKFDQYVQDE----IIGKKQEFSIVMYDTSKLRVQ 114

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                         +     +  I     +     +      +  L ++  A G+E  N
Sbjct: 115 LSREARDKSVVLPSYLQHPRVFDIPKEYCNWQSTHAEALSYPATSLSNIITALGLEIEN 173


>gi|320168778|gb|EFW45677.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 234

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 55/219 (25%), Gaps = 19/219 (8%)

Query: 5   FVIYDYE------TFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEA 57
            ++ D+E      T           +F  V +D    E + S    + +P    +  P  
Sbjct: 14  LLVLDFEAVCDEVT---RPKPQEIIEFPTVVLDTTTLEIVGSFH-KYVRPVSHPILTPFC 69

Query: 58  VFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             +TGIT               E    I  F+           +       S       +
Sbjct: 70  TTLTGITQDMVSGQATFQEVFDEHLAWIQSFWKSLPPAANADADAASTASSSIPSEAPTW 129

Query: 115 YDSYRWSWDNGNSRWDLLDVM----RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
                  WD   +  D L  +     A Y    +  +  +   G +   +  +     ++
Sbjct: 130 AFVTCGDWDLNRALPDQLAALGKKSPAPYRQWINIKKEFAVKYGVSPPGMTAMLDMLRLD 189

Query: 171 H-VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNK 208
                H    D     A+   +               +K
Sbjct: 190 LVGRHHSGIDDCRNIAAVAKEMLRDGHVFEITGTRGESK 228


>gi|290891242|ref|ZP_06554304.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429]
 gi|290479206|gb|EFD87868.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429]
          Length = 177

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 54/187 (28%), Gaps = 28/187 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +             V     +I     ++     +         I G+
Sbjct: 2   NFLAMDFETASSEPWSA--VSLGLTIVRD--NQIAQ--NWYSLIKPETSFSYWNTEINGL 55

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           T    L       E    I   +      ++  +N+RFD+   +                
Sbjct: 56  TADDVLDSPK-FPEVWADIKNLYDDYP--VVVGHNVRFDNNVLKQTLKYYGL-------- 104

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R+  LD +     F            G  + KL  +    G+   + H+A  D  A
Sbjct: 105 -KTPRYLSLDTVSLSRKF----------QPGMVNHKLDTVVSDLGLFLEHHHNASDDAQA 153

Query: 184 TLALVWL 190
           +  ++  
Sbjct: 154 SAQILIY 160


>gi|307109864|gb|EFN58101.1| hypothetical protein CHLNCDRAFT_142424 [Chlorella variabilis]
          Length = 236

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 63/201 (31%), Gaps = 30/201 (14%)

Query: 5   FVIYDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +   D E    G D       Q +   VD     + +  V   +P   YL       +TG
Sbjct: 20  YYCIDVECVATGTDHNSRSVGQIS--LVDEHERVLCNFYVRPDQPVVSYL-----TPLTG 72

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           +T Q   + G+  A+    + Q    P+T  +   NI  D                +   
Sbjct: 73  LTAQLLAQHGMPLAQAVALLQQCL--PSTATLVGQNIAKDVQ-------WLGLKEGQHFE 123

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHV-NAHDAKAD 180
                  DL  + R           W ++    + F    LA      +     HDA  D
Sbjct: 124 QASWGMMDLTGLFRV----------WNTQYKSWSVFGQDHLAKVLLNWDTSVGGHDAVGD 173

Query: 181 VYATLALVWLIREKKPKLFEY 201
              ++ L  L ++ +P   ++
Sbjct: 174 ALKSIRLFKLYQQLQPHPEQW 194


>gi|114623465|ref|XP_519596.2| PREDICTED: histone mRNA 3' end-specific exonuclease isoform 2 [Pan
           troglodytes]
          Length = 298

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 12/136 (8%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++  +  +         + +   +         +    R 
Sbjct: 190 TGITQDQVDRAD-TFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 248

Query: 114 FYDSYRWSWDNGNSRW 129
            Y  +   W N    +
Sbjct: 249 KYPPFAKKWINIRKSY 264


>gi|94265398|ref|ZP_01289151.1| hypothetical protein MldDRAFT_4837 [delta proteobacterium MLMS-1]
 gi|93454100|gb|EAT04432.1| hypothetical protein MldDRAFT_4837 [delta proteobacterium MLMS-1]
          Length = 184

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 37/127 (29%), Gaps = 14/127 (11%)

Query: 6   VIYDYETFGRDVALDRPA---QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +I+D ET G       P    + A  R+     +      F      +    PEA  I G
Sbjct: 4   IIFDTETNGIRP----PIFTLELAAQRMRDWLPE-GPP--FRRLLNHNQDIQPEASRING 56

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            T +   RD     E       +    +   + YN     D       +R    +++   
Sbjct: 57  FTREILERDDEPPLEVYADFADY--AADLPFVAYNLDYDLDKVLIA--HRRGLHTWQQLQ 112

Query: 123 DNGNSRW 129
                 W
Sbjct: 113 AFVMKTW 119


>gi|330983644|gb|EGH81747.1| hypothetical protein PLA107_01340 [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 167

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 7/82 (8%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
          +  D+E  G       P +   V     +      E              +A  + GI+ 
Sbjct: 14 IFVDFEASGIHPD-SYPIEIGIV--GPDF----EFEALIQPVRYWTHWSHDAQDMHGISR 66

Query: 66 QKALRDGVVEAEFSRRIHQFFS 87
                G+  ++  ++++  FS
Sbjct: 67 DLIESKGMAPSQLCQQLNDRFS 88


>gi|322688631|ref|YP_004208365.1| hypothetical protein BLIF_0443 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320459967|dbj|BAJ70587.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 493

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52
            D ET G D A D         ++          E +                + A    
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 53  PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104
           P+  A+       +TGI  + ++   G    +   +      +         +N  F+  
Sbjct: 324 PENAALGNVLIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381

Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              + ++      Y  S+  G  +  D L + R     +    + P  D+   ++  +  
Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437

Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190
             A    H   H    D +  L  +  
Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463


>gi|322690617|ref|YP_004220187.1| hypothetical protein BLLJ_0426 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455473|dbj|BAJ66095.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 493

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52
            D ET G D A D         ++          E +                + A    
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 53  PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104
           P+  A+       +TGI  + ++   G    +   +      +         +N  F+  
Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381

Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              + ++      Y  S+  G  +  D L + R     +    + P  D+   ++  +  
Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437

Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190
             A    H   H    D +  L  +  
Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463


>gi|312133212|ref|YP_004000551.1| dnaq [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482559|ref|ZP_07941574.1| dnaQ protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|311772413|gb|ADQ01901.1| DnaQ [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915981|gb|EFV37388.1| dnaQ protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 493

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52
            D ET G D A D         ++          E +                + A    
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 53  PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104
           P+  A+       +TGI  + ++   G    +   +      +         +N  F+  
Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381

Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              + ++      Y  S+  G  +  D L + R     +    + P  D+   ++  +  
Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437

Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190
             A    H   H    D +  L  +  
Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463


>gi|296453663|ref|YP_003660806.1| hypothetical protein BLJ_0499 [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183094|gb|ADG99975.1| hypothetical protein BLJ_0499 [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 472

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52
            D ET G D A D         ++          E +                + A    
Sbjct: 244 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 303

Query: 53  PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104
           P+  A+       +TGI  + ++   G    +   +      +         +N  F+  
Sbjct: 304 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 361

Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              + ++      Y  S+  G  +  D L + R     +    + P  D+   ++  +  
Sbjct: 362 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 417

Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190
             A    H   H    D +  L  +  
Sbjct: 418 -GALDSAHNERHLGLEDSHIMLVAMKH 443


>gi|227546364|ref|ZP_03976413.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227213345|gb|EEI81217.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 493

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52
            D ET G D A D         ++          E +                + A    
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 53  PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104
           P+  A+       +TGI  + ++   G    +   +      +         +N  F+  
Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381

Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              + ++      Y  S+  G  +  D L + R     +    + P  D+   ++  +  
Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437

Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190
             A    H   H    D +  L  +  
Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463


>gi|239622366|ref|ZP_04665397.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239514363|gb|EEQ54230.1| DNA polymerase III [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 493

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52
            D ET G D A D         ++          E +                + A    
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 53  PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104
           P+  A+       +TGI  + ++   G    +   +      +         +N  F+  
Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381

Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              + ++      Y  S+  G  +  D L + R     +    + P  D+   ++  +  
Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437

Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190
             A    H   H    D +  L  +  
Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463


>gi|23465751|ref|NP_696354.1| hypothetical protein BL1185 [Bifidobacterium longum NCC2705]
 gi|23326437|gb|AAN24990.1| hypothetical protein BL1185 [Bifidobacterium longum NCC2705]
          Length = 493

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52
            D ET G D A D         ++          E +                + A    
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 53  PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104
           P+  A+       +TGI  + ++   G    +   +      +         +N  F+  
Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381

Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              + ++      Y  S+  G  +  D L + R     +    + P  D+   ++  +  
Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437

Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190
             A    H   H    D +  L  +  
Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463


>gi|23335363|ref|ZP_00120600.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Bifidobacterium longum DJO10A]
 gi|189439806|ref|YP_001954887.1| DNA polymerase III subunit epsilon [Bifidobacterium longum DJO10A]
 gi|189428241|gb|ACD98389.1| DNA polymerase III epsilon subunit [Bifidobacterium longum DJO10A]
 gi|291517273|emb|CBK70889.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Bifidobacterium longum subsp. longum F8]
          Length = 493

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52
            D ET G D A D         ++          E +                + A    
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 53  PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104
           P+  A+       +TGI  + ++   G    +   +      +         +N  F+  
Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLTQQPYVAHNATFE-- 381

Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              + ++      Y  S+  G  +  D L + R     +    + P  D+   ++  +  
Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437

Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190
             A    H   H    D +  L  +  
Sbjct: 438 -GALDSAHNERHLGLEDSHIMLVAMKH 463


>gi|195145416|ref|XP_002013689.1| GL24271 [Drosophila persimilis]
 gi|198452116|ref|XP_001358637.2| GA10162 [Drosophila pseudoobscura pseudoobscura]
 gi|194102632|gb|EDW24675.1| GL24271 [Drosophila persimilis]
 gi|198131794|gb|EAL27778.2| GA10162 [Drosophila pseudoobscura pseudoobscura]
          Length = 187

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           V  D E  G DV  D+  + + +  D+       
Sbjct: 14 LVWMDLEMTGLDVDTDKILEVSCIITDKDLNIKSE 48


>gi|213692888|ref|YP_002323474.1| hypothetical protein Blon_2029 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524349|gb|ACJ53096.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320459063|dbj|BAJ69684.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 492

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF--------------FCKPADDYL 52
            D ET G D A D         ++          E +                + A    
Sbjct: 264 IDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETYAYEQGYYAAGDAYGQSRLAFGVP 323

Query: 53  PDPEAV------FITGITPQ-KALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDY 104
           P+  A+       +TGI  + ++   G    +   +      +         +N  F+  
Sbjct: 324 PENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQAQAGLLARLIQQPYVAHNATFE-- 381

Query: 105 YSRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              + ++      Y  S+  G  +  D L + R     +    + P  D+   ++  +  
Sbjct: 382 ---HSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPTNEHPYGDNTLDAYAKRQ- 437

Query: 164 ALANGIEHVNAHDAKADVYATLALVWL 190
             A    H   H    D +  L  +  
Sbjct: 438 -DALDSAHNERHLGLEDSHIMLVAMKH 463


>gi|225374578|ref|ZP_03751799.1| hypothetical protein ROSEINA2194_00193 [Roseburia inulinivorans DSM
           16841]
 gi|225213577|gb|EEG95931.1| hypothetical protein ROSEINA2194_00193 [Roseburia inulinivorans DSM
           16841]
          Length = 574

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V++D ET G           +  + D   ++         +     +       I GIT
Sbjct: 11  YVVFDVETNGLKSKQADLLSISFYKPD-DGKEYSKFLPL--ELNRKIV----TTHINGIT 63

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            Q  +    +      RI + F +    I+ Y    FD  +      R+
Sbjct: 64  EQDLVGATALTQLEFDRIVEEFELEKRIILIYAGGNFDASFLSAYMKRH 112


>gi|60097923|ref|NP_776900.2| three prime repair exonuclease 1 [Bos taurus]
 gi|59858151|gb|AAX08910.1| three prime repair exonuclease 1 isoform b [Bos taurus]
 gi|296474765|gb|DAA16880.1| three prime repair exonuclease 1 [Bos taurus]
          Length = 315

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 59/210 (28%), Gaps = 35/210 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGV---RVDRQW---------------EKIESTEVFF 44
              +  D E  G   +  +  +   +   R   +                  ++      
Sbjct: 12  QTLIFLDLEATGLPFSQPKITELCLLAVHRYALEGLSAPQGPSPTAPVPPRVLDKLS--L 69

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDGV--VEAEFSRRIHQFFSV--PNTCIIGYNNIR 100
           C  A   +  P A  ITG++       G    +A+    I  F        C++ +N  R
Sbjct: 70  C-VAPGKVCSPAASEITGLSTAVLAAHGRRAFDADLVNLIRTFLQRQPQPWCLVAHNGDR 128

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    R         S            D   V       + +     S      S+ L
Sbjct: 129 YDFPLLRAELALLGLASALD---------DAFCVDSITALKALEPTGSSSEHGPRKSYSL 179

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 180 GSVYTRLYGQAPPDSHTAEGDVLALLSVCQ 209


>gi|294790670|ref|ZP_06755828.1| oligoribonuclease [Scardovia inopinata F0304]
 gi|294458567|gb|EFG26920.1| oligoribonuclease [Scardovia inopinata F0304]
          Length = 242

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 18/51 (35%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           +  +  D E  G D+  D   + + V  D     ++       KP+   L
Sbjct: 20 KSRLIWIDCEMTGLDIDHDELCEVSVVPTDFNLTVLDRGIDLVIKPSQGAL 70


>gi|170032730|ref|XP_001844233.1| ubiquitin specific protease [Culex quinquefasciatus]
 gi|167873063|gb|EDS36446.1| ubiquitin specific protease [Culex quinquefasciatus]
          Length = 862

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 70/242 (28%), Gaps = 18/242 (7%)

Query: 221 TPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS 280
            P + V G +   ++          +P Y  S +  N    +   +  +  ++  +  + 
Sbjct: 254 KPFLKVEGGY---KNFQLCYPMCCRNPSYVPSTMEFNDDARLEDIEYPNISEIRMKDDSF 310

Query: 281 HDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR 340
             + +   P   +   +    +         E  E       + ++N   +    N+  +
Sbjct: 311 GSKPQPNRPAVDRNSKVAALHVYESKSKPITELLEEQEKLMDKSIQNEREMLSTENVLKQ 370

Query: 341 FKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
                      + +  +          ++ +  + I                ++   E  
Sbjct: 371 IHDNQENVMDDNEKFEEISTLKYQLMQMEDKQKEFIAENTRLNEQVQEYKIQEQSWRESG 430

Query: 401 FRYRARNFPHTLS----------EKEKQDWLEHR----KKMLTRSRIEEYKNKLQSLSGE 446
            R  AR     L             E++   + R    +  L + R+E+ + ++  ++ E
Sbjct: 431 ERISAREA-ELLELEAQRRIKEKADEQKRVEQERDRLARDRLAQERLEQRREEMLRIAYE 489

Query: 447 YK 448
            K
Sbjct: 490 NK 491


>gi|196013998|ref|XP_002116859.1| hypothetical protein TRIADDRAFT_4552 [Trichoplax adhaerens]
 gi|190580577|gb|EDV20659.1| hypothetical protein TRIADDRAFT_4552 [Trichoplax adhaerens]
          Length = 189

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 10/89 (11%)

Query: 5  FVIYDYETFGRDVALD----RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVF 59
          +++ D+E   +    D       +F  + +D    E        + +P  +         
Sbjct: 7  YLVIDFEATTKSKYRDYHLPEIIEFPALLIDASTLEVFSEFHS-YVRPTINRTLSKFCKR 65

Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV 88
          +TGI+     +     ++F+   H F + 
Sbjct: 66 LTGISQAMVDKA----SDFATVHHLFLNW 90


>gi|209546810|ref|YP_002278728.1| hypothetical protein Rleg2_4741 [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209538054|gb|ACI57988.1| hypothetical protein Rleg2_4741 [Rhizobium leguminosarum bv.
          trifolii WSM2304]
          Length = 182

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVFITGI 63
           V  D+E          P + A V  D        +     +PA +      +A  I GI
Sbjct: 2  IVFLDFEASSLGK-HSYPVEIAWVFED------GRSRSLLIRPAANWTDWSSDAERIHGI 54

Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPN 90
          + +   R GV  A   + +    S  +
Sbjct: 55 SRELLARQGVSVAFVVKEMMMALSGHD 81


>gi|121610584|ref|YP_998391.1| putative DNA exonuclease X [Verminephrobacter eiseniae EF01-2]
 gi|121555224|gb|ABM59373.1| Exodeoxyribonuclease X [Verminephrobacter eiseniae EF01-2]
          Length = 224

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 57/220 (25%), Gaps = 33/220 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWE--KIESTEVFFCKPADDYLPDPEAVFITGI 63
           +I+  +T G         Q A + V   +    +E  E  +         +  A+    I
Sbjct: 4   LIFGTKTTGLH--EPAIVQAAWLMVKDPFTLTVVERFEQRY---NPGKPIELGALATHHI 58

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             ++                 F   P T  +  +++ +D                     
Sbjct: 59  LDEELADCPPA--------SGFSLPPGTEYLIGHDVDYDWRVIGA--------------- 95

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R   L + R + A      Q               L  A+   H   H A   +  
Sbjct: 96  PPVKRICTLALARWLLADIDSHTQAAMLYLFERGSASSLLQHAHSARHDVMHCA---IVL 152

Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
              L  +    +   ++ L+    + ++ K +       L
Sbjct: 153 EHLLARMGDITEATTWQTLWQRSEQARIPKTLTFGKHKGL 192


>gi|261327259|emb|CBH10235.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 452

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 51/197 (25%), Gaps = 23/197 (11%)

Query: 5   FVIYDYETFGRDVALD----RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEAV 58
            ++ D E    +   D       +  GV VD +   ++    F  + +P  + L  P   
Sbjct: 144 LIVVDVEAT-CEYKNDNYPHEIIELPGVLVDVRRGVVDKERSFRSYVRPQRNPLLTPFCK 202

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +TGIT +             + + + F      T   G       D       + + + 
Sbjct: 203 ALTGITQEDVDSAPT-----LQEVVKLFEQWYTETIPRGAKVALATDGPWDLKNFVHEHS 257

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
             R         ++ LD+      F   G              +  L           H 
Sbjct: 258 ILRDHISFPTIFYEYLDIRTTFAHFFNRG---------TPLKLVPMLERLQLTFEGREHC 308

Query: 177 AKADVYATLALVWLIRE 193
              D      L   +  
Sbjct: 309 GFDDAVNIARLAVSMMR 325


>gi|21684658|gb|AAL87523.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 212

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/194 (10%), Positives = 45/194 (23%), Gaps = 26/194 (13%)

Query: 15  RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVV 74
                 R A+   V +        +   F             A  + G+  +        
Sbjct: 1   LSPRYHRLAEVGCVEI-ACGRITGNY--FHAYINPRQRMTRGAQAVHGLRDEFLATQPA- 56

Query: 75  EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDV 134
            +  ++R+  F        +  +N+ FD  +         +                +  
Sbjct: 57  FSAIAQRLLFFLCQS---TLVGHNLSFDLNFLDAGLATAGF----------------MPA 97

Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVYATLALVWLIR 192
            R  +          ++      F L       G+   +   H A  D         + +
Sbjct: 98  ARYCHGVIDTMCHL-AQRGSRRRFSLDACCDMLGVRRGDRARHGALVDAVLLAEAFVVAK 156

Query: 193 EKKPKLFEYLYDYR 206
             +PK+        
Sbjct: 157 RTRPKIGYNCATMS 170


>gi|149377361|ref|ZP_01895106.1| hypothetical protein MDG893_17757 [Marinobacter algicola DG893]
 gi|149358373|gb|EDM46850.1| hypothetical protein MDG893_17757 [Marinobacter algicola DG893]
          Length = 178

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 7  IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFITGITP 65
            D+E    D+    P +      D       +   +  +P          A  + GIT 
Sbjct: 9  FIDFEASSLDLIASYPIEVGICLPD------GTLHSWLIQPHVLWQDWSESAEQVHGITR 62

Query: 66 QKALRDGVVEAEFSRRIHQFFS 87
          +    +G   +E +  ++Q  S
Sbjct: 63 ETLKTEGTPVSEVAAHLNQLLS 84


>gi|261338128|ref|ZP_05966012.1| oligoribonuclease [Bifidobacterium gallicum DSM 20093]
 gi|270276756|gb|EFA22610.1| oligoribonuclease [Bifidobacterium gallicum DSM 20093]
          Length = 219

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           +  D E  G D+  D   + + V  D +   ++    F  KP+ D +
Sbjct: 17 LIWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDEGIDFVIKPSKDAV 64


>gi|47218345|emb|CAG04177.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 340

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 45/171 (26%), Gaps = 15/171 (8%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59
             + D+E                +F  V ++    E ++S    + KP  +       V 
Sbjct: 121 ICVVDFEATCEVDNPSDYHHEIIEFPMVLINTHTLEIVDSFRE-YVKPELNPQLSDFCVK 179

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYR 112
           +TGIT +   +          R   +              +   +         +    R
Sbjct: 180 LTGITQKMVDKA-EPFPAVLERAVAWLQERELGTKYKYAILTDGSWDMSKFLNIQCQISR 238

Query: 113 NFYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
             Y  +   W N    + +   V R     S    +     +G     L D
Sbjct: 239 IRYPQFAKKWINIRKAYRNFYKVSRTQTKLSTMLEKLGLTYNGRPHCGLDD 289


>gi|47606205|sp|Q9BG99|TREX1_BOVIN RecName: Full=Three prime repair exonuclease 1; AltName: Full=3'-5'
           exonuclease TREX1
 gi|12751327|gb|AAK07622.1|AF319575_1 3'-5' exonuclease TREX1 [Bos taurus]
          Length = 315

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 59/210 (28%), Gaps = 35/210 (16%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGV---RVDRQW---------------EKIESTEVFF 44
              +  D E  G   +  +  +   +   R   +                  ++      
Sbjct: 12  QTLIFLDLEATGLPFSQPKITELCLLAVHRYALEGLSAPQGPSPTAPVPPRVLDKLS--L 69

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDGV--VEAEFSRRIHQFFSV--PNTCIIGYNNIR 100
           C  A   +  P A  ITG++       G    +A+    I  F        C++ +N  R
Sbjct: 70  C-VAPGKVCSPAASEITGLSTAVLAAHGRRAFDADLVNLIRTFLQRQPQPWCLVAHNGDR 128

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    R         S            D   V       + +     S      S+ L
Sbjct: 129 YDFPLLRAELALLGLASALD---------DAFCVDSIAALKALEPTGSSSEHGPRKSYSL 179

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 180 GSVYTRLYGQAPPDSHTAEGDVLALLSVCQ 209


>gi|260774665|ref|ZP_05883570.1| oligoribonuclease [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609384|gb|EEX35533.1| oligoribonuclease [Vibrio coralliilyticus ATCC BAA-450]
          Length = 167

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 7/115 (6%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGI---TPQKA 68
            G D    +  + A +  D +   +     +   +P ++     E    T        + 
Sbjct: 2   TGLDPETHKVIEIATIVTDSELNILAEGPVLAIHQPEEELAKMDEWCTTTHTGSGLVDRV 61

Query: 69  LRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
               V E +  R+  +F           I  N++  D  +            +  
Sbjct: 62  RASKVTEQDAVRQTIEFLEQWLPKGVSPICGNSVGQDRRFLYKHMPELETYFHYR 116


>gi|109896857|ref|YP_660112.1| exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas
           atlantica T6c]
 gi|109699138|gb|ABG39058.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas
           atlantica T6c]
          Length = 224

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 55/220 (25%), Gaps = 30/220 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF----- 59
           F+  D E    D+   +      V  + + ++I     ++       +    A       
Sbjct: 29  FLCIDLELTSLDLNDTKILSIGWV--EGKGKQISLQSCYY------QVISTTASLNQSPV 80

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I G+T       G         + QF S     +  ++    D      +F +       
Sbjct: 81  IHGLTADHIA-QGQPLRIALEALKQFASSH---VWVFHCTHLDMTVLNGVFKKLNIP--- 133

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                       +  +  +        +            L        +  V AH+A  
Sbjct: 134 ---------LPTVVTLDTLRFGLYQLTKNLRPPPPNAVV-LPVCRARYNLPAVPAHNALD 183

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           D  ATL L++   +K                  ++     
Sbjct: 184 DAMATLELLFAQIQKFAPKNTDTLKTLMVTDALEVFPAPT 223


>gi|10957521|ref|NP_051628.1| hypothetical protein DR_B0095 [Deinococcus radiodurans R1]
 gi|6460950|gb|AAF12654.1|AE001826_123 hypothetical protein DR_B0095 [Deinococcus radiodurans R1]
          Length = 228

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 9/80 (11%)

Query: 7  IYDYETF---GRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFI 60
          + D E     G   A       +   V +    E +E T                    +
Sbjct: 6  VVDVEATCWEGEPPAGQHSEIIEIGIVVL--NLETLERTGKRSVMVRPEHSEVSAFCTRL 63

Query: 61 TGITPQKALRDGVVEAEFSR 80
          TGITP++A   GV      R
Sbjct: 64 TGITPEEAA-SGVSFGAVLR 82


>gi|62859267|ref|NP_001016146.1| exoribonuclease 1 [Xenopus (Silurana) tropicalis]
 gi|89268181|emb|CAJ81479.1| exonuclease 1 [Xenopus (Silurana) tropicalis]
          Length = 345

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 46/163 (28%), Gaps = 13/163 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             + D+E     G          +F  V ++    +IE     + +P  +       V +
Sbjct: 126 ICVIDFEATCEEGNSTDYTHEIIEFPIVLLNTHTLEIEDVFQRYVRPEINPQLSEFCVNL 185

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT Q  +    +  +  R +  +              +   +         +    R 
Sbjct: 186 TGIT-QDIVDKSDIFPDVLRSVVDWMREKELGTKYKYAILTDGSWDMSKFLNMQCRVSRL 244

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGA 155
            Y  +   W N    + +   V R     +    +     DG 
Sbjct: 245 KYPRFAKKWINICKSYGNFYKVPRTQTKLTTMLEKLGMTYDGR 287


>gi|199597071|ref|ZP_03210504.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
 gi|258507513|ref|YP_003170264.1| DNA polymerase III alpha subunit (Gram-positive type)
           [Lactobacillus rhamnosus GG]
 gi|199592204|gb|EDZ00278.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
 gi|257147440|emb|CAR86413.1| DNA polymerase III, alpha subunit (Gram-positive type)
           [Lactobacillus rhamnosus GG]
 gi|259648866|dbj|BAI41028.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
          Length = 469

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 5   FVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +V+ D E        ++    + + +RV +   +I+ T   F +    +   P +V ITG
Sbjct: 275 YVVIDTE---FVADRNQLDLTEISLLRVRQH--RIDQTFDIFTQLPAGHHVMPFSVKITG 329

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS 87
           IT     + G         + Q   
Sbjct: 330 ITDDLLAKYGQSLPLVKTALQQLLR 354


>gi|27378800|ref|NP_770329.1| hypothetical protein bsl3689 [Bradyrhizobium japonicum USDA 110]
 gi|27351949|dbj|BAC48954.1| bsl3689 [Bradyrhizobium japonicum USDA 110]
          Length = 68

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVD 31
          MT   ++ D ET G D   D   +   V+ D
Sbjct: 1  MTKTGILIDVETTGLDQHEDEVIELGMVKFD 31


>gi|157870091|ref|XP_001683596.1| phosphotransferase [Leishmania major strain Friedlin]
 gi|68126662|emb|CAJ04503.1| putative phosphotransferase [Leishmania major strain Friedlin]
          Length = 582

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 3   NHFVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
           + +V+ D+E      R ++     +F  V +D R    +   +  + +P  + +      
Sbjct: 56  DAYVVLDFEATCEADRRISDAEVIEFPMVLIDARTATPVAEFQ-RYVRPVKNPVLSRFCT 114

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPN 90
            +TGIT     R             QF +   
Sbjct: 115 ELTGITQDMVSRCD-PFPVVYCEALQFLAEAG 145


>gi|299753899|ref|XP_001833615.2| double-strand siRNA ribonuclease [Coprinopsis cinerea okayama7#130]
 gi|298410514|gb|EAU88160.2| double-strand siRNA ribonuclease [Coprinopsis cinerea okayama7#130]
          Length = 389

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 51/212 (24%), Gaps = 30/212 (14%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQF-AGVRVDRQ---------WEKIESTEVFFCKPADD 50
           F++ D E     G D+   +   +F   +               E I+    F  +P   
Sbjct: 143 FLVLDIEGTCDQGSDLDFPNEIIEFPVCLLTWNDKGQDMSASELEVIDEFRSF-VRPTWR 201

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDD 103
            +       +TGIT ++         E   +   F              +          
Sbjct: 202 PVLTDFCKDLTGITQEQVDSAP-TFPEVLAQFEAFIKKNGLINDEGEPLVRFCWCTDGPF 260

Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR--AIYAFSPDGIQWPSRDDGATSFKLQ 161
                I  + F       W    +  D+  +++         +       +    S +  
Sbjct: 261 DIQNFIIKQCFISKLPLPWWLKGNVLDVRTLVQHYVAKQTRSNHGHRGRSNVTVPSRRSL 320

Query: 162 DL-----ALANGIEHVNAHDAKADVYATLALV 188
           ++      L         H    D      ++
Sbjct: 321 NIPAQLKVLELQEFQGRQHSGIDDTRNIARIL 352


>gi|242087831|ref|XP_002439748.1| hypothetical protein SORBIDRAFT_09g019420 [Sorghum bicolor]
 gi|241945033|gb|EES18178.1| hypothetical protein SORBIDRAFT_09g019420 [Sorghum bicolor]
          Length = 283

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 21/194 (10%)

Query: 1   MTNHFVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPE 56
           M + FV+ D+E     G  +      +F  V VD      + +    + +P         
Sbjct: 1   MFDFFVVIDFEATCQEGSVIYPQEIIEFPSVLVDGATGRTLSTFRT-YVRPRHHPRLTDF 59

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TGIT       GV  AE      ++       +               +    + D
Sbjct: 60  CRDLTGITQGDV-DAGVTLAEALGMHDRWLEAHGAKL-------------GKLAVVTWGD 105

Query: 117 SYRWSWDNGNSRWDLLDVMRAI-YAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNA 174
               +   G  R+  ++         +       +   G   F LQD     G+      
Sbjct: 106 WDCRTMLEGECRFKGIEKPHYFDDWINLRLPFSAAFGVGNVRFTLQDAIRKAGLQWEGRL 165

Query: 175 HDAKADVYATLALV 188
           H    D   T  L+
Sbjct: 166 HCGLDDALNTAHLL 179


>gi|120553048|ref|YP_957399.1| hypothetical protein Maqu_0105 [Marinobacter aquaeolei VT8]
 gi|120322897|gb|ABM17212.1| conserved hypothetical protein [Marinobacter aquaeolei VT8]
          Length = 170

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 1  MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEA 57
          M++ F     D+E    D+    P +      D           +  +P          A
Sbjct: 1  MSSDFSPAFIDFEASSLDLIASYPIEVGICMPDGAL------HSWLIQPHVLWQDWSESA 54

Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFF 86
            I GI+ Q+ L++G+  +E ++++++  
Sbjct: 55 ETIHGISRQRLLQEGMPVSEVAQQLNELL 83


>gi|313892527|ref|ZP_07826115.1| exonuclease [Dialister microaerophilus UPII 345-E]
 gi|313119055|gb|EFR42259.1| exonuclease [Dialister microaerophilus UPII 345-E]
          Length = 195

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 33/190 (17%)

Query: 4   HFVIYDYET--FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +   D+ET  +G             V  D   +  +               D E + + 
Sbjct: 2   KYTAIDFETAFWG----KGNACSLGIVISDGS-KLTDEWYDLIRPV--HLNFDEECIRVN 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+           +  +I       N  +   +N  FD     N   R       + 
Sbjct: 55  GIHPEDVKDKPEFPY-YWDKISGLL---NGTVAFAHNAPFDFGVLANTIDRYELPDINFC 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W       D +++ R ++                 + KL  +A     E  N H A  D 
Sbjct: 111 W------GDTVEISRILW-------------KKLPNHKLNTVAEFLNFEF-NHHQALDDA 150

Query: 182 YATLALVWLI 191
            A   +V   
Sbjct: 151 RACEWIVRHA 160


>gi|254520242|ref|ZP_05132298.1| exonuclease [Clostridium sp. 7_2_43FAA]
 gi|226913991|gb|EEH99192.1| exonuclease [Clostridium sp. 7_2_43FAA]
          Length = 300

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 24/195 (12%)

Query: 20  DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
           +   +   +++D   + +E  +  + KP+   + +P+   IT I  +     GV      
Sbjct: 39  NEIIEIGAIKLDNYMKPLEEFKT-YIKPSVIPVLNPKISEITNIKEEDL-EKGVSFEVGI 96

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
             + +     +                         D      +    ++D LD ++   
Sbjct: 97  ESLSKIIDDGDII-----------------CSWAKDDIIEIINNAVYHKYDNLDWLKNYL 139

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLIREKKPK 197
                  +         S  L++      I   N   HDA  D   T  +   I   +  
Sbjct: 140 DLQEYSTKI---LGKKKSLSLKNALEELKIRIDNNKLHDALNDAIYTSLVFKRIYNSRAL 196

Query: 198 LFEYLYDYRNKNQLR 212
               + D  N   + 
Sbjct: 197 KSYIIKDIYNMPAVE 211


>gi|296087843|emb|CBI35099.3| unnamed protein product [Vitis vinifera]
          Length = 520

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 71/253 (28%), Gaps = 34/253 (13%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           FV+ D+E     G++       +F  V V     ++E+    + +P  + +       +T
Sbjct: 246 FVVIDFEATCDKGKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQILSDFCKDLT 305

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFY- 115
           GI   +    GV  +E   R  ++            ++ ++N            ++    
Sbjct: 306 GIQQIQV-DRGVTLSEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLESECRFKKIRK 364

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNA 174
             Y   W N    +                        G     L++     G      A
Sbjct: 365 PPYFNRWINLKVPF--------------------REVFGGVWCNLKEAVEMAGLAWQGRA 404

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           H    D   T     L+     + F++        Q     +    +P +     +   +
Sbjct: 405 HCGLDDAKNT---ARLLAFLMHRGFKFSITNSLMWQATDHPESWKQSPELSSFPEYHPQK 461

Query: 235 SNTALIAPVAWHP 247
                I    +HP
Sbjct: 462 LREPTIPLFHYHP 474


>gi|229826629|ref|ZP_04452698.1| hypothetical protein GCWU000182_02005 [Abiotrophia defectiva ATCC
           49176]
 gi|229789499|gb|EEP25613.1| hypothetical protein GCWU000182_02005 [Abiotrophia defectiva ATCC
           49176]
          Length = 313

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 76/258 (29%), Gaps = 38/258 (14%)

Query: 5   FVIYDYETFGRDVALDR--------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           ++++D E      + +           +   V++D  ++ I+S      KP    +  PE
Sbjct: 3   YIVFDLEWNQGYPSKEESEKSLPFEIIEIGAVKLDEHFKIIDSFH-RIIKP----VVYPE 57

Query: 57  AVFITG----ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD-DYYSRNIFY 111
               T     +T +     G       +   ++    +           D     RN+ +
Sbjct: 58  LFKYTKELIPLTEKDL-SKGTDFVTACKEFLKWCRKGDRNYSFATWGTLDLLELQRNMAF 116

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
              Y+ +                    Y                T F L++      ++ 
Sbjct: 117 FEVYNCFSRP---------------LYYYNVQYLFNIFMEKYDETVFSLENAIKYLELDE 161

Query: 172 VNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYR---NKNQLRKLIDIQNMTPLVHVS 227
             A H A +D   T  ++  I +   +L+  +  Y+   NKNQ   +I   +   +    
Sbjct: 162 DKAFHSAISDAEYTAEILRHISDINIRLYPSVDTYKFPLNKNQEVSIIYPDHKLSITRAY 221

Query: 228 GMFGASRSNTALIAPVAW 245
               A R  +   A    
Sbjct: 222 SSKEALRKASESEAFCCH 239


>gi|170718052|ref|YP_001785090.1| ribonuclease T [Haemophilus somnus 2336]
 gi|168826181|gb|ACA31552.1| ribonuclease T [Haemophilus somnus 2336]
          Length = 218

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 55/198 (27%), Gaps = 26/198 (13%)

Query: 6   VIYDYETFGRDVALD--RPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           VI D ET G +   D         +++D     + +    F  +P +    +PE++   G
Sbjct: 24  VIIDVETAGFNAQTDALLELAALTLKMDENGLLVPDEKCHFHIQPFEGANINPESLKFNG 83

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           I     LR  + E      + +        +     +I  +N  FD  +      R    
Sbjct: 84  IDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFDQSFVMAAAERTKIK 143

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
                  N    + + D            +          SF           +   AH 
Sbjct: 144 ------RNPFHPFSIFDTATLSGFMFGQTVLVKGCQVANISF-----------DGKKAHS 186

Query: 177 AKADVYATLALVWLIREK 194
           A  D   T  L   +   
Sbjct: 187 ALYDAERTAELFCYMVNH 204


>gi|83645626|ref|YP_434061.1| putative exonuclease [Hahella chejuensis KCTC 2396]
 gi|83633669|gb|ABC29636.1| putative exonuclease [Hahella chejuensis KCTC 2396]
          Length = 176

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 45/186 (24%), Gaps = 23/186 (12%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D ET   D       + A    +R   K+                   A  +  I+ 
Sbjct: 4   LFLDTETTNLD-DTAEVVEIA--VTNRHGTKL-----LNTLVKPQGPMSAAAQNVHQISE 55

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
            +             R+++        +I +N         +                  
Sbjct: 56  LELKGAP-SWPITYPRVYKLLYKRP--VIIFNADFDVRILRQTCNAWALPPIPFTP---- 108

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 L  MR    F     +       + +  L+ +   +     + H A  D   T 
Sbjct: 109 ------LCAMRLYAEFHGQWSEKGQFKYQSQARALEQI--GHPAAATSLHRAAYDAQMTS 160

Query: 186 ALVWLI 191
            +++ +
Sbjct: 161 EIIYTM 166


>gi|57530089|ref|NP_001006450.1| 3'-5' exoribonuclease 1 [Gallus gallus]
 gi|53130526|emb|CAG31592.1| hypothetical protein RCJMB04_8i1 [Gallus gallus]
          Length = 327

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 47/170 (27%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             + D+E     G          +F  V ++    +IE T   + KP  +       V +
Sbjct: 108 ICVVDFEATCEEGNPPEFIHEIIEFPVVLLNTHTLEIEDTFQQYVKPEINPKLSEFCVGL 167

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT     +      +  + +  +              +   +         +    R 
Sbjct: 168 TGITQDIVDKAD-TFPQVLQNVVDWMRQRELGTKYSYCMLTDGSWDMSKFLNIQCRVSRI 226

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            + S+   W N    + +   V R          +     DG     L D
Sbjct: 227 KHPSFAKKWINIRKSYGNFYKVPRNQTKLMIMLEKLGMSYDGRPHSGLDD 276


>gi|118591295|ref|ZP_01548693.1| hypothetical protein SIAM614_26648 [Stappia aggregata IAM 12614]
 gi|118435967|gb|EAV42610.1| hypothetical protein SIAM614_26648 [Stappia aggregata IAM 12614]
          Length = 218

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 20/102 (19%)

Query: 2   TNHFVIYDYE--TF---------G-RDVALDRPAQFAGVRVDRQW--EKIESTEVFFCKP 47
            +H +IYD E  T          G  D   +  AQ   V++  Q   + +++  V   KP
Sbjct: 1   MHHVIIYDCEYLTAPGAMRRQWCGPLDPDPN-VAQIGAVKLSLQGGYDILDTFNVLI-KP 58

Query: 48  AD----DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQF 85
            D        DP    +TGIT     R+G+   +   R   F
Sbjct: 59  RDRFGAHPNVDPFFTELTGITQADIDREGIAHVDALERFADF 100


>gi|145297909|ref|YP_001140750.1| oligoribonuclease [Aeromonas salmonicida subsp. salmonicida A449]
 gi|166215749|sp|A4SJD0|ORN_AERS4 RecName: Full=Oligoribonuclease
 gi|142850681|gb|ABO89002.1| oligoribonuclease [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 181

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           + V  D E  G D   +   + A +  D+    +  
Sbjct: 6  QNLVWIDMEMTGLDPEENVVLEIATIVTDKDLNVLAE 42


>gi|54696964|gb|AAV38854.1| three prime repair exonuclease 1 [synthetic construct]
          Length = 305

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               + +D E  G   +  +  +   + V R    +ES                      
Sbjct: 1   MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 58

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100
              A      P A  ITG++       G     +    +   F        C++ +N  R
Sbjct: 59  LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGYR 118

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +             S  +G    D +  ++     + +    PS      S+ L
Sbjct: 119 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 169

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 170 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 199


>gi|45476845|sp|Q7TMF2|ERI1_MOUSE RecName: Full=3'-5' exoribonuclease 1; AltName: Full=3'-5'
           exonuclease ERI1; AltName: Full=Eri-1 homolog; AltName:
           Full=Histone mRNA 3'-exonuclease 1
 gi|28204890|gb|AAH46412.1| Exoribonuclease 1 [Mus musculus]
 gi|74179153|dbj|BAE42771.1| unnamed protein product [Mus musculus]
 gi|148703505|gb|EDL35452.1| three prime histone mRNA exonuclease 1 [Mus musculus]
          Length = 345

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 126 ICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEFCIGL 185

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++ ++              +   +         +    R 
Sbjct: 186 TGITQDQVDRADA-FPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRL 244

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            + ++   W N    + +   V R+    +    +     DG     L D
Sbjct: 245 KHPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 294


>gi|71417701|ref|XP_810631.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70875192|gb|EAN88780.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 379

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 52/211 (24%), Gaps = 36/211 (17%)

Query: 9   DYETF--GRDVAL-DRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           D+E       VA      +F  V VD  +   +      + +P  +         +TGIT
Sbjct: 99  DFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHS-YVRPTKNPRLTSFCTALTGIT 157

Query: 65  PQKALRDGVVEAEFSRRIH----------------QFFSVPNTCI-----------IGYN 97
             +         E  R                   +     N C+             +N
Sbjct: 158 QAQVDAAPR-LPEVLRHFDLWLREVVYPLCRRWRKEHLEGLNKCLKASQKRRFVYDETHN 216

Query: 98  NIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
               D      +     +D     +    S      +   ++    +     +       
Sbjct: 217 PGWIDCERMICMVTDGPWDM--RKFMYECSVVRDGHLFPPLFYRWVNVRHSFAEHFRMRP 274

Query: 158 FKLQDLALANGIE-HVNAHDAKADVYATLAL 187
            KL D+    G+  H + H    D      +
Sbjct: 275 RKLNDMLRKLGLSFHGHPHSGIDDSRNIARI 305


>gi|27904991|ref|NP_778117.1| oligoribonuclease [Buchnera aphidicola str. Bp (Baizongia
          pistaciae)]
 gi|46396112|sp|Q89A34|ORN_BUCBP RecName: Full=Oligoribonuclease
 gi|27904389|gb|AAO27222.1| oligoribonuclease [Buchnera aphidicola str. Bp (Baizongia
          pistaciae)]
          Length = 160

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 5/35 (14%), Positives = 15/35 (42%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
           + +  D E  G +  + +  + A +  D+  + +
Sbjct: 6  KNLIWIDLEMTGLNPNIHKIIEIATLITDKNLKIL 40


>gi|322821651|gb|EFZ27916.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 379

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 52/211 (24%), Gaps = 36/211 (17%)

Query: 9   DYETF--GRDVAL-DRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           D+E       VA      +F  V VD  +   +      + +P  +         +TGIT
Sbjct: 99  DFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHS-YVRPTKNSRLTSFCTALTGIT 157

Query: 65  PQKALRDGVVEAEFSRRIH----------------QFFSVPNTCI-----------IGYN 97
             +         E  R                   +     N C+             +N
Sbjct: 158 QAQVDAAPR-LPEVLRHFDLWLREVVYPLCRRWRKEHLEGLNKCLKASQKRRFVYDETHN 216

Query: 98  NIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
               D      +     +D     +    S      +   ++    +     +       
Sbjct: 217 PGWIDCERMICMVTDGPWDM--RKFMYECSVVRDGHLFPPLFYRWVNVRHSFAEHFRMRP 274

Query: 158 FKLQDLALANGIE-HVNAHDAKADVYATLAL 187
            KL D+    G+  H + H    D      +
Sbjct: 275 RKLNDMLRKLGLSFHGHPHSGIDDSRNIARI 305


>gi|322500703|emb|CBZ35780.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 880

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 38/148 (25%), Gaps = 18/148 (12%)

Query: 5   FVIYDYETFGRDVALD-------RPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPE 56
            ++ D+E                   +F  V VD + +  +      F +P       P 
Sbjct: 632 LLVLDFEAT---CEEHPPPNYLYEIIEFPVVVVDARLQRVVAEFH-RFVRPRYKRELSPF 687

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFY 111
              +TG+  +          E  R+  ++ S           +    +   ++   +   
Sbjct: 688 CQKLTGMRQEDVDTA-ASLEEVIRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSVS 746

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           R         +   + +       R   
Sbjct: 747 RQGIRFPSLFYQFIDVKQTFACFFRCSQ 774


>gi|146092929|ref|XP_001466576.1| hypothetical protein [Leishmania infantum]
 gi|134070939|emb|CAM69615.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 880

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 38/148 (25%), Gaps = 18/148 (12%)

Query: 5   FVIYDYETFGRDVALD-------RPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPE 56
            ++ D+E                   +F  V VD + +  +      F +P       P 
Sbjct: 632 LLVLDFEAT---CEEHPPPNYLYEIIEFPVVVVDARLQRVVAEFH-RFVRPRYKRELSPF 687

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFY 111
              +TG+  +          E  R+  ++ S           +    +   ++   +   
Sbjct: 688 CQKLTGMRQEDVDTA-ASLEEVIRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSVS 746

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           R         +   + +       R   
Sbjct: 747 RQGIRFPSLFYQFIDVKQTFACFFRCSQ 774


>gi|221132558|ref|XP_002167097.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 287

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 52/197 (26%), Gaps = 24/197 (12%)

Query: 5   FVIYDYETFGRDVA----LDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVF 59
           +V+ D+E    +           +F  V V     E +      +C+P  + +       
Sbjct: 97  YVVIDFEATCDEPNPSGFQHEIIEFPAVLVKTSTLEIVSEFHS-YCRPVINPVLSEFCKS 155

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT  +     V E    +R  ++                         +    D   
Sbjct: 156 LTGITQVQVESSSVFEV-VLQRFDKWLKQ---------------QVMPTETFCIATDGPW 199

Query: 120 WSWDNGNSRWDLLDVMRAIYAFS-PDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDA 177
                  ++   L++    Y     +  +            ++ +    G+E     H  
Sbjct: 200 DLDRFLKNQCKTLNIQIPHYFHRWVNIRKHFYNYYKINQANVELMLQHLGMEFEGRPHRG 259

Query: 178 KADVYATLALVWLIREK 194
             D      ++  +   
Sbjct: 260 IDDARNIARILIQLIRD 276


>gi|297156433|gb|ADI06145.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
           bingchenggensis BCW-1]
          Length = 188

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 12/140 (8%)

Query: 3   NHFVIYDYETF---GRDVA--LDRPAQFAGVRVDRQWEKIESTE--VFFCKPADDYLPDP 55
           +  ++ D E     G           +      +      E         +P    +  P
Sbjct: 7   DRILVVDVEATCWDGPAPEGMESEIIEIG--LCELDVATGERPVRRSLMVRPEHSTV-SP 63

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T ITP++A   G+  AE    +          +           ++R     N  
Sbjct: 64  FCTELTTITPEQAA-AGIGFAEACEILRDE-HGAGHRVWASWGEYDRAQFTRQSSATNIR 121

Query: 116 DSYRWSWDNGNSRWDLLDVM 135
             +     N  + + L+  +
Sbjct: 122 YPFGTRHLNVKNLYSLMHSL 141


>gi|229821136|ref|YP_002882662.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae
          DSM 12333]
 gi|229567049|gb|ACQ80900.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae
          DSM 12333]
          Length = 235

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           +  V  D E  G D+A D   + A +  D +   ++        P    L
Sbjct: 7  KDPIVWIDCEMTGLDLATDALVEVAVIVTDSELHPLDGGIDVVIAPPPGAL 57


>gi|55959490|emb|CAI12490.1| prion protein interacting protein [Homo sapiens]
 gi|56203065|emb|CAI23193.1| prion protein interacting protein [Homo sapiens]
          Length = 204

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/192 (9%), Positives = 49/192 (25%), Gaps = 19/192 (9%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
              +F  ++++ +  +IEST   + +P       P    +TGI             +   
Sbjct: 3   EIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVLE 61

Query: 81  RIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLD 133
           R+ ++ +          +  +   +            Y     +  +       +     
Sbjct: 62  RVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKGSSPG 121

Query: 134 VMRAIYAFSPDGIQWPSRDDG----------ATSFKLQDLALANGIEH-VNAHDAKADVY 182
                  +  +  Q      G               L D+     ++H    H    D  
Sbjct: 122 TASGTSCYQSEEAQRKENTPGVKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCK 181

Query: 183 ATLALVWLIREK 194
               ++  +  +
Sbjct: 182 NIANIMKTLAYR 193


>gi|229553558|ref|ZP_04442283.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus LMS2-1]
 gi|258538698|ref|YP_003173197.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus Lc 705]
 gi|229313183|gb|EEN79156.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus LMS2-1]
 gi|257150374|emb|CAR89346.1| DNA polymerase III, alpha subunit (Gram-positive type)
           [Lactobacillus rhamnosus Lc 705]
          Length = 471

 Score = 45.6 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 5   FVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +V+ D E        ++    + + +R+ +   +I+ T   F +    +   P +V ITG
Sbjct: 275 YVVIDTE---FVADRNQLDLTEISLLRIRQH--QIDQTFDIFTQLPAGHHVMPFSVKITG 329

Query: 63  ITPQKALRDGVVEAEFSRRIHQFF 86
           IT     + G         + Q  
Sbjct: 330 ITDDLLEKYGQPLPLVKTALQQLL 353


>gi|164686250|ref|ZP_02210280.1| hypothetical protein CLOBAR_02688 [Clostridium bartlettii DSM
           16795]
 gi|164601852|gb|EDQ95317.1| hypothetical protein CLOBAR_02688 [Clostridium bartlettii DSM
           16795]
          Length = 344

 Score = 45.6 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 58/215 (26%), Gaps = 11/215 (5%)

Query: 23  AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82
                ++ D + +KIE  +    KP       P    +T IT +        E+   R  
Sbjct: 27  IAIGAIKYDTKTKKIEKFKSLI-KPILTKTVYPHIEELTHITTEDLENAPTYES-VMRSF 84

Query: 83  HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
             +    N     Y     D    +N    +   +    + N    + +    + +    
Sbjct: 85  KHWLGDFNEIDGIYTFGNLDLTCFKNTDRISSQKNNHPRFLNNIQNFFVDIKEKYLEYGV 144

Query: 143 PDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
                         S         N     +AHD   D Y    L  ++ + +      +
Sbjct: 145 KCMNYISLTHLLELS---------NMKFSGDAHDPLYDAYNLHILDEILEKNQDVRNYLI 195

Query: 203 YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
               NK+   ++ D        +   ++    +  
Sbjct: 196 IQDINKSPYNQIDDEIEAKIKDYEKYLYHKEGNYN 230


>gi|220921028|ref|YP_002496329.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
 gi|219945634|gb|ACL56026.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           nodulans ORS 2060]
          Length = 222

 Score = 45.6 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 29/112 (25%), Gaps = 6/112 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ--WEKIESTEVFFCKPADDYLPDPEAV 58
           +    +  D E  G   A DR   F  V +D         +            +  P A 
Sbjct: 16  LPPRLLAIDVEATGL-AARDRIVSFGAVALDTASLLGPSPAPTCHHLIFDPQRVSHPRAE 74

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
            + G             A     I       +  +I  +N  FD    +  F
Sbjct: 75  AVHGYDDWLLRHQD-PAALHLNAIAALLGQAD--LIVAHNAAFDFGLLQREF 123


>gi|125547686|gb|EAY93508.1| hypothetical protein OsI_15303 [Oryza sativa Indica Group]
          Length = 214

 Score = 45.6 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDR 32
             V  D E  G D+  DR  + A +  D 
Sbjct: 69 KPLVWIDLEMTGLDITKDRILEIACIITDG 98


>gi|332994343|gb|AEF04398.1| hypothetical protein ambt_14420 [Alteromonas sp. SN2]
          Length = 176

 Score = 45.6 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 6/82 (7%)

Query: 7  IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
          I D E  G   A   P +   VR D                      D EA  + GIT  
Sbjct: 13 IIDLEASGFG-ARSYPIEIGIVRYDG-----AKWCKLIRPFDSWVHWDQEAESLHGITRA 66

Query: 67 KALRDGVVEAEFSRRIHQFFSV 88
               GV   +    ++ F S 
Sbjct: 67 MLNTYGVCPVKVCHELNAFLSN 88


>gi|239993165|ref|ZP_04713689.1| putative DNA polymerase, exonuclease activity [Alteromonas
           macleodii ATCC 27126]
          Length = 229

 Score = 45.6 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 54/205 (26%), Gaps = 36/205 (17%)

Query: 8   YDYETFGRDVALDRPAQFAGV--------RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
            D E    D    +      V             +  I ++      P            
Sbjct: 36  VDLELTSLDPVTTQITSIGYVSGSAGKITLSSSGYHVINTSADLGQSPV----------- 84

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I G+T     +        +  I+    +  T ++ ++N R D     + F R       
Sbjct: 85  IHGLTLDILQQG----EGLADAINSLLPLLKTHVLIFHNARLDLMALDSAFKRCGLPQME 140

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             +       D L +   +Y  +      PS      S  L        +     H+A  
Sbjct: 141 VLY------LDTLQLA--LYQLNKQHQVLPSN-----SATLTVCRQRLDLPAFPEHNALD 187

Query: 180 DVYATLALVWLIREKKPKLFEYLYD 204
           D  AT+ L +    +     E   +
Sbjct: 188 DALATMQLFYAQLNELGITLENSLE 212


>gi|312068745|ref|XP_003137358.1| smfn protein [Loa loa]
 gi|307767487|gb|EFO26721.1| smfn protein [Loa loa]
          Length = 186

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 14/149 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL----PDPEAVFI 60
            +  D E  G DV      + A V  +     +E           D L       +A F 
Sbjct: 10  IIWMDCEMTGLDVTSKTIVEIACVITEPDLTIVEEGLNLIISQPKDVLEGMDDWCKATFT 69

Query: 61  -TGITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRN-----IFY 111
             G+  Q+     +   +    I  +      P  C +G N++  D  + +        +
Sbjct: 70  SNGLL-QEIRSSKITVQQAENEILTYVRQHTDPGMCPLGGNSVGSDRIFLQKYMPTLEKH 128

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
            ++ +    S      RW      R    
Sbjct: 129 LHYRNIDVSSIKELAKRWYPYIYARKPRK 157


>gi|241205541|ref|YP_002976637.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240859431|gb|ACS57098.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 199

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 28/166 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +  D+ET   +             +          E    +P +        + I GI P
Sbjct: 7   IAIDFET--ANEQRGSACSVGLAWI-EDGRVT-RVEERLIRPREMR-FSGMNIAIHGIRP 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +          E     H+  S      +  +N  FD        +R   D YR S+   
Sbjct: 62  EHVEDAPE-FPEVMDEFHEDIS---GATMIAHNAAFDFSV-----WRASLDLYRQSY--- 109

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                    +  + +       WP       S +L  +A   G+  
Sbjct: 110 -------PELTYLCSLKMAQRIWPHFL----SHRLNLIAEHLGLRF 144


>gi|5524927|emb|CAB50866.1| deoxyribonuclease III (DNase III) [Homo sapiens]
          Length = 304

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               + +D E  G   +  +  +   + V R    +ES                      
Sbjct: 1   MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 58

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100
              A      P A  ITG++       G     +    +   F        C++ +N  R
Sbjct: 59  LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 118

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +             S  +G    D +  ++     + +    PS      S+ L
Sbjct: 119 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 169

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 170 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 199


>gi|48146355|emb|CAG33400.1| TREX1 [Homo sapiens]
          Length = 304

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               + +D E  G   +  +  +   + V R    +ES                      
Sbjct: 1   MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 58

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100
              A      P A  ITG++       G     +    +   F        C++ +N  R
Sbjct: 59  LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 118

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +             S  +G    D +  ++     + +    PS      S+ L
Sbjct: 119 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 169

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 170 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 199


>gi|18921087|gb|AAL82504.1| three prime repair exonuclease 1 [Homo sapiens]
 gi|54696966|gb|AAV38855.1| three prime repair exonuclease 1 [Homo sapiens]
 gi|54696968|gb|AAV38856.1| three prime repair exonuclease 1 [Homo sapiens]
 gi|61358085|gb|AAX41500.1| three prime repair exonuclease 1 [synthetic construct]
 gi|61358090|gb|AAX41501.1| three prime repair exonuclease 1 [synthetic construct]
 gi|119585287|gb|EAW64883.1| three prime repair exonuclease 1, isoform CRA_g [Homo sapiens]
          Length = 304

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               + +D E  G   +  +  +   + V R    +ES                      
Sbjct: 1   MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 58

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100
              A      P A  ITG++       G     +    +   F        C++ +N  R
Sbjct: 59  LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 118

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +             S  +G    D +  ++     + +    PS      S+ L
Sbjct: 119 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 169

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 170 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 199


>gi|71396663|ref|XP_802406.1| exonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70862768|gb|EAN80960.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 310

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 51/206 (24%), Gaps = 36/206 (17%)

Query: 9   DYETF--GRDVAL-DRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           D+E       VA      +F  V VD  +   +      + +P  +         +TGIT
Sbjct: 99  DFEATCDSASVAYPHEIIEFPVVCVDTAELRVVAEFHS-YVRPTKNPRLTSFCTALTGIT 157

Query: 65  PQKALRDGVVEAEFSRRIH----------------QFFSVPNTCI-----------IGYN 97
             +         E  R                   +     N C+             +N
Sbjct: 158 QAQVDAAPR-LPEVLRHFDLWLREVVYPLCRRWRKEHLEGLNKCLKASQKRRFVYDETHN 216

Query: 98  NIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS 157
               D      +     +D     +    S      +   ++    +     +       
Sbjct: 217 PGWIDCERMICMVTDGPWDM--RKFMYECSVVRDGHLFPPLFYRWVNVRHSFAEHFRMRP 274

Query: 158 FKLQDLALANGIE-HVNAHDAKADVY 182
            KL D+    G+  H + H    D  
Sbjct: 275 RKLNDMLRKLGLSFHGHPHSGIDDSR 300


>gi|315226274|ref|ZP_07868062.1| oligoribonuclease [Parascardovia denticolens DSM 10105]
 gi|315120406|gb|EFT83538.1| oligoribonuclease [Parascardovia denticolens DSM 10105]
          Length = 254

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP 47
           +  D E  G D+  D   + + V  D   + ++       KP
Sbjct: 35 LIWIDCEMTGLDIEHDELCEVSVVPTDFNLKVLDQGIDLVIKP 77


>gi|297243822|ref|ZP_06927752.1| oligoribonuclease [Gardnerella vaginalis AMD]
 gi|296888243|gb|EFH26985.1| oligoribonuclease [Gardnerella vaginalis AMD]
          Length = 235

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 10/125 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFIT- 61
            +  D E  G D+  D   + + V  D   + ++       KP+D  +         +  
Sbjct: 17  LIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKPSDAAVAHMNDFVRNMHT 76

Query: 62  --GITPQKALRDGVVEAEFSRRIHQ----FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
             G+  +   ++G+   E  +++ +    F        +  N++  D  +          
Sbjct: 77  SSGLVDE-WNKNGLPLEEAQKQVVEYVKRFLPARGKAHLAGNSVGSDKKFLDRYMPDLMA 135

Query: 116 DSYRW 120
           + +  
Sbjct: 136 NLHYR 140


>gi|332215859|ref|XP_003257060.1| PREDICTED: three prime repair exonuclease 1-like [Nomascus
           leucogenys]
          Length = 314

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               + +D E  G   +  +  +   + V R    +ES                      
Sbjct: 11  MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPLPPRVVDKLS 68

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100
              A      P A  ITG++       G     +    +   F        C++ +N  R
Sbjct: 69  LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 128

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +             S  +G    D +  ++     + +    PS      S+ L
Sbjct: 129 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 179

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 180 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 209


>gi|88810619|ref|ZP_01125876.1| DNA polymerase III subunit epsilon [Nitrococcus mobilis Nb-231]
 gi|88792249|gb|EAR23359.1| DNA polymerase III subunit epsilon [Nitrococcus mobilis Nb-231]
          Length = 166

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 30/110 (27%), Gaps = 8/110 (7%)

Query: 32  RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT 91
           R  E       F      D   +  A+ I G++        +  +E +     F      
Sbjct: 2   RDGEPTGE--NFHRYINPDIEVEESALKIHGLSSAMLADKPL-FSEIAPYFCDFIR--GR 56

Query: 92  CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAF 141
            +I Y   + D   +    + +        W       D    ++++   
Sbjct: 57  AVIAY---KLDQVAALEREFVHLMGRLLPPWKARGWDLDEQCSLQSLAML 103


>gi|294786667|ref|ZP_06751921.1| oligoribonuclease [Parascardovia denticolens F0305]
 gi|294485500|gb|EFG33134.1| oligoribonuclease [Parascardovia denticolens F0305]
          Length = 242

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP 47
           +  D E  G D+  D   + + V  D   + ++       KP
Sbjct: 23 LIWIDCEMTGLDIEHDELCEVSVVPTDFNLKVLDQGIDLVIKP 65


>gi|38232887|ref|NP_938654.1| DNA polymerase III subunit epsilon [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199145|emb|CAE48769.1| Putative helicase [Corynebacterium diphtheriae]
          Length = 373

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 9/102 (8%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDG 72
            G   +  R      V    Q E+++     F     +  P P    + G++P++   +G
Sbjct: 56  SGIHPSTSRLVTIDAVTFTEQGEEVDHF---FAVLNPESNPGPF--HLHGLSPEQIQ-EG 109

Query: 73  VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
              ++  + + +     +   +  +N      +  +   R  
Sbjct: 110 KRYSQILKALDRLI---DGRTLLVHNAELVWGFIVSESKRAM 148


>gi|238750960|ref|ZP_04612457.1| Exonuclease RNase T and DNA polymerase III [Yersinia rohdei ATCC
           43380]
 gi|238710874|gb|EEQ03095.1| Exonuclease RNase T and DNA polymerase III [Yersinia rohdei ATCC
           43380]
          Length = 180

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 58/200 (29%), Gaps = 32/200 (16%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-FFCKPADDYL-PDPEAVF 59
           +  FV  D ET G    L          V          +V F+ +   D    DPEA+ 
Sbjct: 4   SEIFVSVDIETSGPVPGLFSLLSIGACLVHA-------PDVRFYAELKPDCTGFDPEALA 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVP-----NTCIIGYNNIRFDDYYSRNIFYRNF 114
           +TG   Q     G+  A+   ++  + +            G N               +F
Sbjct: 57  VTGFNLQALATTGIAPADAMLQLSTWLTSHLQPSQKPVFTGLNAPFD----------WSF 106

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            + Y   +   N  +    +    Y     G  W        + +L             +
Sbjct: 107 INYYFHKYTGNNP-FGFSALDIKAYFMGATGCTWSETKSSMMTQRLSAKGR-------PS 158

Query: 175 HDAKADVYATLALVWLIREK 194
           H+A  D      L  L++ K
Sbjct: 159 HNALDDALFQAELFALMQNK 178


>gi|165905605|ref|NP_080343.4| 3'-5' exoribonuclease 1 [Mus musculus]
 gi|26380424|dbj|BAB29333.2| unnamed protein product [Mus musculus]
 gi|74228094|dbj|BAE38007.1| unnamed protein product [Mus musculus]
          Length = 345

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 126 ICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNDQLSEFCIGL 185

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++ ++              +   +         +    R 
Sbjct: 186 TGITQDQVDRADA-FPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRL 244

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            + ++   W N    + +   V R+    +    +     DG     L D
Sbjct: 245 KHPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 294


>gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
 gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
          Length = 306

 Score = 45.6 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 15/141 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F+  D+ET   +   D            +  +I   + +  KP +     P  + I GI
Sbjct: 2   NFIAIDFET--ANEKRDSACSIG--LTVVKNNQIIEQKYYLIKPNELR-FAPINISIHGI 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                        +    +  +F+  N  I+ +N              R+  D+Y   + 
Sbjct: 57  RASDVKNA-KTFDQLWPELLPYFT--NNIIMAHNAAFDLSVL------RHTLDAYHIPYP 107

Query: 124 NGNSRWDLLDVMRAIYAFSPD 144
           N       + + R  +    +
Sbjct: 108 N-CRYGCTMILSRNFFPHLEN 127


>gi|18375535|ref|NP_338599.1| three prime repair exonuclease 1 isoform b [Homo sapiens]
 gi|12751309|gb|AAK07613.1|AF319566_2 3'-5' exonuclease TREX1 [Homo sapiens]
 gi|12751311|gb|AAK07614.1|AF319567_2 3'-5' exonuclease TREX1 [Homo sapiens]
 gi|12751315|gb|AAK07616.1|AF319569_1 3'-5' exonuclease TREX1 [Homo sapiens]
 gi|17865433|gb|AAD48774.2| 3'-5' exonuclease TREX1 [Homo sapiens]
          Length = 314

 Score = 45.6 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               + +D E  G   +  +  +   + V R    +ES                      
Sbjct: 11  MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 68

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100
              A      P A  ITG++       G     +    +   F        C++ +N  R
Sbjct: 69  LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 128

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +             S  +G    D +  ++     + +    PS      S+ L
Sbjct: 129 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 179

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 180 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 209


>gi|206968801|ref|ZP_03229756.1| exonuclease family protein [Bacillus cereus AH1134]
 gi|206735842|gb|EDZ53000.1| exonuclease family protein [Bacillus cereus AH1134]
          Length = 281

 Score = 45.6 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 59/208 (28%), Gaps = 28/208 (13%)

Query: 1   MTN--HFVIYDYETFGRDVALDR----PAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
           M N  HF+++D E                    V+++    + IE               
Sbjct: 1   MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSEL---VKPSARL 56

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +TGIT +  +       +   +  QF    +   I  +  + D  +  +     
Sbjct: 57  TRHTTKLTGITKKDLMGVEK-FPQIIEKFIQFIGEGS---IFVSWGKEDYRFLSHDCTLY 112

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             +      +N   R DL   +   Y             +   S +     LA   E   
Sbjct: 113 GVECPSIEKEN---RIDLQKFVFQAY---------EELFEHTPSLQFAVEQLALTWE-GK 159

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEY 201
            H A AD   T  ++  +  ++     Y
Sbjct: 160 QHRALADAENTANILLKVYSERDINKRY 187


>gi|148244280|ref|YP_001218974.1| oligoribonuclease [Candidatus Vesicomyosocius okutanii HA]
 gi|146326107|dbj|BAF61250.1| oligoribonuclease [Candidatus Vesicomyosocius okutanii HA]
          Length = 181

 Score = 45.6 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 12/36 (33%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          + +  D E  G     D   + A +  D Q   I  
Sbjct: 7  NLIWIDLEMTGLTPEKDVIIEIATIVTDAQLHIIAQ 42


>gi|321468566|gb|EFX79550.1| hypothetical protein DAPPUDRAFT_4269 [Daphnia pulex]
          Length = 199

 Score = 45.2 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 54/195 (27%), Gaps = 21/195 (10%)

Query: 5   FVIYDYE-TFGRDVALD---RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF 59
           FVI D+E T G            +F  + ++       +    F C+P  +         
Sbjct: 5   FVIIDFEGTCGFLKNPCGIQEIIEFPAILLNGHNGSIEDEFHSF-CQPVLNPSLTNFCKK 63

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT     +  +   +      ++    N  I  Y +                  +  
Sbjct: 64  LTGITQDAVDKAPL-FKDVFVSFEEWLKK-NKVIGSYYSFAVVTDD----------PNDI 111

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD--GATSFKLQDLALANGIEH-VNAHD 176
             +     R   +D       +    I +             L+++    G E    AH 
Sbjct: 112 RQFLQKQCRISEIDFPTYCQNWINIKIIFAHFYKNGNMQCLSLKNMIRDIGCEFQGRAHS 171

Query: 177 AKADVYATLALVWLI 191
              D     ++V  +
Sbjct: 172 GIDDARNIASIVQRL 186


>gi|72387357|ref|XP_844103.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62360611|gb|AAX81022.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800635|gb|AAZ10544.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 452

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 51/197 (25%), Gaps = 23/197 (11%)

Query: 5   FVIYDYETFGRDVALD----RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEAV 58
            ++ D E    +   D       +  GV VD +   ++    F  + +P  + L  P   
Sbjct: 144 LIVVDVEAT-CEYKNDNYPHEIIELPGVLVDVRRGVVDKERSFRSYVRPQRNPLLTPFCK 202

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +TGIT +             + + + F      T   G       D       + + + 
Sbjct: 203 ALTGITQEDVDSAPT-----LQEVVKLFEQWYTETIPRGAKVALATDGPWDLKNFVHEHS 257

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
             R         ++ LD+      F   G              +  L           H 
Sbjct: 258 ILRDHISFPTIFYEYLDIRTTFAHFFNRG---------TPLKLVPMLERLQLTFEGREHC 308

Query: 177 AKADVYATLALVWLIRE 193
              D      L   +  
Sbjct: 309 GFDDAVNIARLAVSMMR 325


>gi|30021640|ref|NP_833271.1| exonuclease [Bacillus cereus ATCC 14579]
 gi|29897195|gb|AAP10472.1| DNA polymerase III, epsilon chain [Bacillus cereus ATCC 14579]
          Length = 281

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 59/208 (28%), Gaps = 28/208 (13%)

Query: 1   MTN--HFVIYDYETFGRDVALDR----PAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
           M N  HF+++D E                    V+++    + IE               
Sbjct: 1   MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSEL---VKPSARL 56

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +TGIT +  +       +   +  QF    +   I  +  + D  +  +     
Sbjct: 57  TRHTTKLTGITKKDLMGVEK-FPQIIEKFIQFIGEGS---IFVSWGKEDYRFLSHDCTLY 112

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             +      +N   R DL   +   Y             +   S +     LA   E   
Sbjct: 113 GVECPSIEKEN---RIDLQKFVFQAY---------EELFEHTPSLQFAVEQLALTWE-GK 159

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEY 201
            H A AD   T  ++  +  ++     Y
Sbjct: 160 QHRALADAENTANILLRVYSERDINKRY 187


>gi|290996841|ref|XP_002680990.1| predicted protein [Naegleria gruberi]
 gi|284094613|gb|EFC48246.1| predicted protein [Naegleria gruberi]
          Length = 175

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 36  KIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG 95
           +         KP+        A  +TGIT  +   D +   +  +RI +F    +  +I 
Sbjct: 4   ETGEYVSSLVKPS--CPITMNARQLTGIT-SELFSDCLEFNQHIQRIKEFIGNDDVLLIA 60

Query: 96  YNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD-- 153
           +N  +FD+   +  F  N       S     +  D L ++       P   ++  +    
Sbjct: 61  HNGKKFDERVLKYHFTDNL------SQFENCTLVDSLQMITKFNDDLPTVTRFSKKQQKL 114

Query: 154 -GATSFKLQDLALA-NGIEHVNAHDAKADVYATLAL 187
                 KL  +     G E  +AH A +DV A   +
Sbjct: 115 VEKKDKKLVSIYKHIFGSEIEDAHFALSDVKALALI 150


>gi|290970253|ref|XP_002668076.1| predicted protein [Naegleria gruberi]
 gi|284081197|gb|EFC35332.1| predicted protein [Naegleria gruberi]
          Length = 111

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 13/40 (32%)

Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           G D+  D   + A +  D     I   +      +D  L
Sbjct: 2  TGLDIDSDHILEIAVIITDGNLNIIAQLDSLIVHQSDSVL 41


>gi|229815699|ref|ZP_04446024.1| hypothetical protein COLINT_02747 [Collinsella intestinalis DSM
           13280]
 gi|229808615|gb|EEP44392.1| hypothetical protein COLINT_02747 [Collinsella intestinalis DSM
           13280]
          Length = 321

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 47/196 (23%), Gaps = 16/196 (8%)

Query: 8   YDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDY----LPDPEAVFITG 62
            D ET GR             +            + F+C   D Y    +P  +   I  
Sbjct: 135 IDIETTGRAPERGYIINVGWEIMELTSDAVPHDPQAFYCGIPDMYRETGVPLAD---IHH 191

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I             E  +   +   +     I  +N  F+D      ++      Y  + 
Sbjct: 192 IQWSDL-DGKTPFREDVKLQKELLKLMKRYPIMAHNAAFED-----SWFMLHLPGYAEAR 245

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             G  +  ++D      +   +    P     A+             +    H    D  
Sbjct: 246 RAG--KIIVIDSRHICRSVDGEVRTLPRESAPASLQNWARRRGTLAADENELHLGLDDTD 303

Query: 183 ATLALVWLIREKKPKL 198
             L  V      K   
Sbjct: 304 LMLRTVQAEFNLKNMF 319


>gi|297204442|ref|ZP_06921839.1| exonuclease superfamily protein [Streptomyces sviceus ATCC 29083]
 gi|297148690|gb|EFH29078.1| exonuclease superfamily protein [Streptomyces sviceus ATCC 29083]
          Length = 189

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 8/123 (6%)

Query: 7   IYDYETF---GRDVAL--DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           + D E     G           +     VD    +         +PA   +       +T
Sbjct: 12  VVDVEATCWPGSPPPHAISEIIEIGLTVVDLSTAERVERHRILVRPARSEV-SDFCTELT 70

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G+T  +    G+   E  RR+                    + ++R          +   
Sbjct: 71  GLTQDEV-DGGLSFGEACRRLASE-HASGARPWASWGDYDRNQFTRQCGATKTPYPFGRR 128

Query: 122 WDN 124
             N
Sbjct: 129 HTN 131


>gi|2833216|sp|Q08880|DPO3E_BUCAP RecName: Full=DNA polymerase III subunit epsilon
 gi|1794288|gb|AAC44791.1| DNA polymerase III epsilon chain [Buchnera aphidicola]
          Length = 233

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 65/232 (28%), Gaps = 16/232 (6%)

Query: 1   MTNH--FVIYDYETFGRD----VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
           M N    ++ D ET G +      L+      G                + KP    L +
Sbjct: 1   MNNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN--RLIE 58

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +A  I GIT            + ++    +       I   +N  FD  +    F    
Sbjct: 59  SDASKIHGITDDFLSDKP-SFKDIAKDFFNYIKNSELII---HNASFDVGFINQEFSMLT 114

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEHVN 173
                 S  N  +  D L + R ++    +       R     S ++   A+ +      
Sbjct: 115 KKIQDIS--NFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGK 172

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
            +        ++     I+ +             K++  K+I        +H
Sbjct: 173 LYLLMTSGQESIIFNKNIQNE-RNFRYIKKSITKKHRFLKIIKANKTELKLH 223


>gi|291164801|gb|ADD80831.1| oligoribonuclease [Rhodococcus phage ReqiDocB7]
          Length = 207

 Score = 45.2 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 1  MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV 42
          M+ + F++ D ET G   +     +        Q E I++ + 
Sbjct: 1  MSFNGFILLDLETTGLKPSEGHILELGMALYSPQLEMIDAFQS 43


>gi|195054679|ref|XP_001994252.1| GH11306 [Drosophila grimshawi]
 gi|193896122|gb|EDV94988.1| GH11306 [Drosophila grimshawi]
          Length = 187

 Score = 45.2 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 15/47 (31%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           V  D E  G D+  D+  + + +  D+          F  +     
Sbjct: 14 IVWMDLEMTGLDINTDQILELSCIITDKHLNIKSEGPSFAIRHPQHV 60


>gi|26379605|dbj|BAB29127.2| unnamed protein product [Mus musculus]
          Length = 345

 Score = 45.2 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E     G          +F  V ++    +IE T   + +P  +       + +
Sbjct: 126 ICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNDQLSEFCIGL 185

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT  +  R      +  +++ ++              +   +         +    R 
Sbjct: 186 TGITQDQVDRADA-FPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRLSRL 244

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            + ++   W N    + +   V R+    +    +     DG     L D
Sbjct: 245 KHPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDD 294


>gi|332667991|ref|YP_004450779.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336805|gb|AEE53906.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 180

 Score = 45.2 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 32/120 (26%), Gaps = 6/120 (5%)

Query: 4   HFVIYDYETF---GRDVALDR-PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +F+I+D E     GR  +  +   +   V ++   E             +  L       
Sbjct: 2   NFIIFDLEATCWEGRPPSKVQEVIEIGAVLMNGYGEVEAEFSRMVRPILNPRL-SAYCQE 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +T I   +  R   +          +  + +   I  +    D          +  +   
Sbjct: 61  LTNIKQTEVDRA-SIFPVVVESFQDWGLMLDEDYILCSWGGMDKKLLLQDCQLHDIEDEW 119


>gi|7705353|ref|NP_057465.1| three prime repair exonuclease 1 isoform a [Homo sapiens]
 gi|47606216|sp|Q9NSU2|TREX1_HUMAN RecName: Full=Three prime repair exonuclease 1; AltName: Full=3'-5'
           exonuclease TREX1; AltName: Full=DNase III
 gi|12751313|gb|AAK07615.1|AF319568_1 3'-5' exonuclease TREX1-like protein [Homo sapiens]
 gi|23272145|gb|AAH23630.1| Three prime repair exonuclease 1 [Homo sapiens]
 gi|182888323|gb|AAI60084.1| Three prime repair exonuclease 1 [synthetic construct]
 gi|189054807|dbj|BAG37636.1| unnamed protein product [Homo sapiens]
          Length = 369

 Score = 45.2 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               + +D E  G   +  +  +   + V R    +ES                      
Sbjct: 66  MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 123

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100
              A      P A  ITG++       G     +    +   F        C++ +N  R
Sbjct: 124 LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 183

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +             S  +G    D +  ++     + +    PS      S+ L
Sbjct: 184 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 234

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 235 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 264


>gi|118098336|ref|XP_424602.2| PREDICTED: similar to Exonuclease domain containing 1 [Gallus
           gallus]
          Length = 660

 Score = 45.2 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 52/205 (25%), Gaps = 31/205 (15%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            ++ D+E+              +F  V ++            F  +P +  +       +
Sbjct: 24  LLVLDFESTCWRDARQRRPEIIEFPAVLLNAATGRIEAEFHTF-VQPQEQPVLSEFCTTL 82

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TG+T ++   +GV       +  ++              +       +   RN     + 
Sbjct: 83  TGVTQKQV-DEGVPLHICLSQFLKWLQE---------IQKEKKILFSSDIPRNAIPEAKL 132

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE---------- 170
                 + WDL   +   Y      +  P   +     K    A  N             
Sbjct: 133 CTFVTWTDWDLG--VCLHYECKRKQLWKPDIFNSWIDLKATYRAFYNRKPKGLSGALQYV 190

Query: 171 ----HVNAHDAKADVYATLALVWLI 191
                   H    D   T  L W +
Sbjct: 191 GLAFVGREHSGLDDSRNTARLAWRL 215


>gi|300777777|ref|ZP_07087635.1| DNA-directed DNA polymerase III epsilon subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300503287|gb|EFK34427.1| DNA-directed DNA polymerase III epsilon subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 184

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 60/210 (28%), Gaps = 28/210 (13%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           F   D+ET           +   + V +  + +E+ + +  KP          + + GI 
Sbjct: 3   FCAIDFET--ATHEKSSACEMG-ICVVQDSKIVET-KTWLIKPPSFPYFSKFNIAVHGIQ 58

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          E               ++  +N  FD    R                 
Sbjct: 59  PEDVKDAP-TFDEIWYEAQDMMY---GSLMIAHNAGFDASVLR----------------- 97

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
           G      +   +  Y  S    +          + L+ LA  + I+  + H A AD    
Sbjct: 98  GCLEHYGMFTPKLNYLCSIQLAKKSWNY--LPKYGLKPLAEYHKIDFTH-HRAGADAEVC 154

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
             +  L  EK             K +++KL
Sbjct: 155 AKISLLAFEKLFLTSNDEVHDYMKAKIKKL 184


>gi|332816811|ref|XP_003309834.1| PREDICTED: three prime repair exonuclease 1-like [Pan troglodytes]
          Length = 369

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 33/210 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               + +D E  G   +  +  +   + V R    +ES                      
Sbjct: 66  MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 123

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100
              A      P A  ITG++       G     +    +   F        C++ +N  R
Sbjct: 124 LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 183

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +             S  +G    D +  ++     + +    PS      S+ L
Sbjct: 184 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 234

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 235 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 264


>gi|290474872|ref|YP_003467752.1| Exonuclease [Xenorhabdus bovienii SS-2004]
 gi|289174185|emb|CBJ80974.1| Exonuclease [Xenorhabdus bovienii SS-2004]
          Length = 186

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 56/207 (27%), Gaps = 30/207 (14%)

Query: 1   MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           M     ++  D ET G    +          V +         ++     D    DPE++
Sbjct: 1   MRKSEVYISVDVETSGPVPGVFSLLSIGACLVHQ-----AEVAIYLELQPDSPEHDPESL 55

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVP-----NTCIIGYNNIRFDDYYSRNIFYRN 113
            +TG+   +  +DG+  +    +   +             +G N            F   
Sbjct: 56  AVTGLDLMQLEQDGLPPSAAMHQFKVWIESVIDPGQKAIFVGLNTPFD------WSFINY 109

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
           ++  Y      G +  D+       Y     G  W        S  L+            
Sbjct: 110 YFYKYVGINPFGFTAIDI-----KAYFMGAYGYSWSETKSSHMSAILKPC-------TKP 157

Query: 174 AHDAKADVYATLALVWLIREKKPKLFE 200
            H+A  D      L  L+  ++     
Sbjct: 158 NHNALEDARFQAELFALMLARQTGDIR 184


>gi|219883058|ref|YP_002478222.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
 gi|219862064|gb|ACL42405.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 187

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 44/188 (23%), Gaps = 27/188 (14%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +F   D+E    +           V   R      +T             D  A  I GI
Sbjct: 8   NFTAIDFEA--ANSDRASACSVG-VTTVRDGLITGTTSWLIRPFTGLDSFDAYASRIHGI 64

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                +       +   R+           +  +NI +D    R+ F        R  + 
Sbjct: 65  DASMVIDA-QPLKDAMLRLSGIIGDG---PVLAHNITYDATVLRHSFELTGLGQPRNEFR 120

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                                              +L  +    G+   + HDA AD  A
Sbjct: 121 --------------------CTQTLSRAALQLEKTRLHVVTAYLGLPEFDNHDAAADSLA 160

Query: 184 TLALVWLI 191
              +   I
Sbjct: 161 CARIALHI 168


>gi|167751276|ref|ZP_02423403.1| hypothetical protein EUBSIR_02262 [Eubacterium siraeum DSM 15702]
 gi|167655783|gb|EDR99912.1| hypothetical protein EUBSIR_02262 [Eubacterium siraeum DSM 15702]
          Length = 319

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 23/110 (20%), Gaps = 3/110 (2%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
              Q   V V       E     + +P            +TGIT               +
Sbjct: 12  EIIQIGAVAV-TDGIVSEDFFSEYVRPRYYTELKGRIKKLTGITKNDLKNA-HDLTVVLK 69

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS-YRWSWDNGNSRW 129
              ++       +I       D             D+ +   W N     
Sbjct: 70  SFRKWLEKFGKDVIIVTWGPDDIPTLVKQCEFYERDTGWLPEWFNLQPLM 119


>gi|332528277|ref|ZP_08404282.1| oligoribonuclease [Hylemonella gracilis ATCC 19624]
 gi|332042297|gb|EGI78618.1| oligoribonuclease [Hylemonella gracilis ATCC 19624]
          Length = 195

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 3  NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE 35
           + V  D E  G D   +R  + A +      E
Sbjct: 19 QNLVWIDCEMTGLDPEKERLIEIAIIVTGPNLE 51


>gi|146344208|ref|YP_001202064.1| oligoribonuclease [Pseudomonas fluorescens SBW25]
 gi|40789171|emb|CAE84149.1| oligoribonuclease [Pseudomonas fluorescens]
 gi|146188020|emb|CAM96350.1| plant-inducible oligoribonuclease [Pseudomonas fluorescens SBW25]
          Length = 195

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 49/193 (25%), Gaps = 29/193 (15%)

Query: 7   IYDYETFGRDVALDR------PAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPEAVF 59
             D ET G     DR        +   V  D  +  + ST +   +P    L    EAV 
Sbjct: 15  WLDLETTGFTELFDRRVYEHRILEIGAVVTDEHFTVLASTSIVIQQPMVRVLELSDEAV- 73

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
                 +    +G+   E  +      +                 + R        +   
Sbjct: 74  -----TRMHTNNGL-FDEVVKSFTTLKA----------AEHQLIQFYRQNGVSKKVEPLC 117

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                    +D + +   +                   F L+ ++ +        H A  
Sbjct: 118 ----GSGIHFDRMFIEAQMPELHDFLYYRNLDISSVKEF-LKTISPSFEPSKRQQHRALP 172

Query: 180 DVYATLALVWLIR 192
           D+  ++A     R
Sbjct: 173 DILESVAEAKTYR 185


>gi|241613193|ref|XP_002407353.1| YJER protein, putative [Ixodes scapularis]
 gi|215502777|gb|EEC12271.1| YJER protein, putative [Ixodes scapularis]
          Length = 171

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 7/123 (5%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62
            V  D E  G ++   +  + A +  D Q   +           D+ L   +       G
Sbjct: 37  LVWIDLELTGLELETCKIMEIACLVTDGQLNLLSEGIDIAIHQPDEVLEGMNDWCKEHHG 96

Query: 63  IT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
            +   Q      V   E  +R+    S    P  C +  N +  D  +            
Sbjct: 97  KSGLTQACRESSVTVEEAEQRVLSLVSQLVPPGKCHLAGNTVYMDRLFLARYMPELNSYL 156

Query: 118 YRW 120
           +  
Sbjct: 157 HYR 159


>gi|299472868|emb|CBN80437.1| EsV-1-139 [Ectocarpus siliculosus]
          Length = 269

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
             D ET G D   +   +   V  DR   +I+S
Sbjct: 44 FWIDMETTGLDTDTNLILEIVMVVTDRDLNEIDS 77


>gi|218231753|ref|YP_002368350.1| exonuclease [Bacillus cereus B4264]
 gi|296504043|ref|YP_003665743.1| exonuclease [Bacillus thuringiensis BMB171]
 gi|218159710|gb|ACK59702.1| exonuclease family protein [Bacillus cereus B4264]
 gi|296325095|gb|ADH08023.1| exonuclease [Bacillus thuringiensis BMB171]
          Length = 281

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 59/208 (28%), Gaps = 28/208 (13%)

Query: 1   MTN--HFVIYDYETFGRDVALDR----PAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
           M N  HF+++D E                    V+++    + IE               
Sbjct: 1   MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSEL---VKPSARL 56

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +TGIT +  +       +   +  QF    +   I  +  + D  +  +     
Sbjct: 57  TRHTTKLTGITKKDLMGVEK-FPQIIEKFIQFIGEGS---IFVSWGKEDYRFLSHDCTLY 112

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             +      +N   R DL   +   Y             +   S +     LA   E   
Sbjct: 113 GVECPSIEKEN---RIDLQKFVFQAY---------EELFEHTPSLQFAVEQLALTWE-GK 159

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEY 201
            H A AD   T  ++  +  ++     Y
Sbjct: 160 QHRALADAENTANILLKVYSERDINKRY 187


>gi|330799210|ref|XP_003287640.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum]
 gi|325082367|gb|EGC35851.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum]
          Length = 557

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 12/108 (11%)

Query: 9   DYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
           D ET G  VA D   + + +   D           F+            +  I G T + 
Sbjct: 286 DTETTGLSVATDEITEISIIDLYDG--------SHFYKLINPTTTVSSASASIHGHTNKS 337

Query: 68  ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRN 113
              +     +    + ++ S    +   I  +N +FD     +   +N
Sbjct: 338 LAGNEY-WCDIEPSLIEYLSKYQKSGAYIIAHNEKFDRGILASQIGKN 384


>gi|329121817|ref|ZP_08250433.1| exonuclease [Dialister micraerophilus DSM 19965]
 gi|327468090|gb|EGF13578.1| exonuclease [Dialister micraerophilus DSM 19965]
          Length = 195

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 58/220 (26%), Gaps = 33/220 (15%)

Query: 4   HFVIYDYET--FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            +   D+ET  +G             V  D   +  +               D E + + 
Sbjct: 2   KYTAIDFETAFWG----KGNACSLGIVISDGS-KLTDEWYDLIRPV--HLNFDEECIRVN 54

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GI P+           +  +I       N  +   +N  FD     N   R       + 
Sbjct: 55  GIHPEDVKDKPEFPY-YWNKISGLL---NGTVAFAHNAPFDFGVLANTIDRYELPDINFY 110

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           W       D +++ R ++                 + KL  +A     E  N H A  D 
Sbjct: 111 W------GDTVEISRILW-------------KKLPNHKLNTVAEFLNFEF-NHHQALDDA 150

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
            A   +V     +           +   +L+     +   
Sbjct: 151 RACEWIVRHALLETNSSNPSEMMEKIGLKLKPFEIKRTRK 190


>gi|291458895|ref|ZP_06598285.1| exonuclease family protein [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418149|gb|EFE91868.1| exonuclease family protein [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 234

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 41/174 (23%), Gaps = 15/174 (8%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
              Q   V +D  +  +E     +  P    + D     +TGI  ++         E   
Sbjct: 39  EIIQIGAVLLDESFRNMEEI-SLYVHPEHG-VIDRFIANLTGIQRRQVKESKK-LREALL 95

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
            + Q  S        Y     D    R                    RW     +     
Sbjct: 96  ELEQRVSEKGE-YKIYTWSGSDYSQLRRELDLKEISEEAIERFMEQERWVDYQKIFGERY 154

Query: 141 FSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
                        G      + L+L        AH+   D   T  ++  + + 
Sbjct: 155 RL-----------GRKVSLEEALSLCGITPDGKAHNGLDDSINTGYIIEKLEKD 197


>gi|225463988|ref|XP_002263189.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 415

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 71/253 (28%), Gaps = 34/253 (13%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           FV+ D+E     G++       +F  V V     ++E+    + +P  + +       +T
Sbjct: 141 FVVIDFEATCDKGKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQILSDFCKDLT 200

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYRNFY- 115
           GI   +    GV  +E   R  ++            ++ ++N            ++    
Sbjct: 201 GIQQIQV-DRGVTLSEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLESECRFKKIRK 259

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNA 174
             Y   W N    +                        G     L++     G      A
Sbjct: 260 PPYFNRWINLKVPF--------------------REVFGGVWCNLKEAVEMAGLAWQGRA 299

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           H    D   T     L+     + F++        Q     +    +P +     +   +
Sbjct: 300 HCGLDDAKNT---ARLLAFLMHRGFKFSITNSLMWQATDHPESWKQSPELSSFPEYHPQK 356

Query: 235 SNTALIAPVAWHP 247
                I    +HP
Sbjct: 357 LREPTIPLFHYHP 369


>gi|150864912|ref|XP_001383918.2| hypothetical protein PICST_57408 [Scheffersomyces stipitis CBS
          6054]
 gi|149386168|gb|ABN65889.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 211

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)

Query: 3  NHFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIES 39
          N  V  D E  G DV   D   +   +  D     ++ 
Sbjct: 13 NPLVWIDCEMTGLDVFGDDHIIEVCCIITDGDLNVVDE 50


>gi|296225121|ref|XP_002758506.1| PREDICTED: three prime repair exonuclease 1-like [Callithrix
           jacchus]
          Length = 404

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 33/210 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               + +D E  G   +  +  +   + V R    +E+                      
Sbjct: 101 MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALENPPTSQGPPPIVPPPPRVVDKLS 158

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100
              A      P A+ ITG++       G     +    +   F        C++ +N  R
Sbjct: 159 LCVAPGKACSPAAINITGLSTAVLAAHGRQCFDDNLANLLLAFLQRQPQPWCLVAHNGDR 218

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +             S  +G    D +  ++     + +    PS      S+ L
Sbjct: 219 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----ALERAGSPSEHGPRKSYSL 269

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 270 GSIYTRLYGKSPPDSHTAEGDVLALLSICQ 299


>gi|162455935|ref|YP_001618302.1| oligoribonuclease [Sorangium cellulosum 'So ce 56']
 gi|161166517|emb|CAN97822.1| oligoribonuclease [Sorangium cellulosum 'So ce 56']
          Length = 187

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/174 (9%), Positives = 41/174 (23%), Gaps = 28/174 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           V  D E  G D +     + A +  +     +              +  PE+V   G++ 
Sbjct: 9   VWVDLEMTGLDESSCAIVEIATIVTEPDLTVVAEGPCL-------VIHQPESVLA-GMSD 60

Query: 66  ------------QKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIF 110
                       ++     +   +       F        T ++  N++  D  + +   
Sbjct: 61  FVRDLHERSGLLERIRASTLSVGDAESETRAFLEAHCDKGTAVLCGNSVWKDRAFLQRYM 120

Query: 111 YRNFYDSYRW-----SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                  +       +      RW  L                    +    ++
Sbjct: 121 PELLSFLHYRIVDVSTLKELVRRWYPLRAAPKKREIHRALDDIRESIEELRWYR 174


>gi|50955256|ref|YP_062544.1| DNA polymerase III, epsilon subunit [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50951738|gb|AAT89439.1| DNA polymerase III, epsilon subunit [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 192

 Score = 45.2 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 46/155 (29%), Gaps = 9/155 (5%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT  F   D+ET   + +         V+V R    ++ +      PA         V I
Sbjct: 1   MTLDFTAIDFET--ANSSAASACSVGLVKV-RDGRVVDRSGWLIQPPAGHDEFHEWNVRI 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY--RNFYDSY 118
            G+ P            ++ ++           +  +N  FD    R      R     Y
Sbjct: 58  HGVHPADIAGAPG----WADQLADLVEFCEDDALVAHNAGFDMGVIRAACAATRIACPDY 113

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD 153
           R+      +R   L+  R   A    G +     D
Sbjct: 114 RYLCSLQVARRTCLESYRLPAAALAAGFEDFHHHD 148


>gi|309359092|emb|CAP32714.2| hypothetical protein CBG_14047 [Caenorhabditis briggsae AF16]
          Length = 298

 Score = 45.2 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 14/195 (7%)

Query: 6   VIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEAVFI 60
           +I D+ET       D      QF+ V  D + + I     F  F +P  + +        
Sbjct: 12  IILDFETTSEGETHDYPFEVIQFSVVPYDVKAKTILEGHAFNKFVRPVVNPVLSKHCTEF 71

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  +             ++  ++                    SR   +R     +R 
Sbjct: 72  TGIKQESLNAAD-TFLVVYKQFLKWLQKNG----FQERHFAIVSDSRQDMWRIAQYQFRL 126

Query: 121 SWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             +   S +   +++ R       DG +            L  L +        AHDA +
Sbjct: 127 VQETMPSMFRQWINIKRTFDDGLEDGQKNKLVGRSNMEKMLNYLGIEFS---GRAHDALS 183

Query: 180 DVYATLALVWLIREK 194
           D     A+   I E 
Sbjct: 184 DCLTLAAITQKILEM 198


>gi|326929461|ref|XP_003210882.1| PREDICTED: ERI1 exoribonuclease 2-like [Meleagris gallopavo]
          Length = 716

 Score = 44.8 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 51/201 (25%), Gaps = 31/201 (15%)

Query: 9   DYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           D+E+              +F  V ++            F  +P +  +       +TG+T
Sbjct: 70  DFESTCWRDARQRRPEIIEFPAVLLNAATGRIEAEFHAF-VQPQEQPVLSEFCTALTGVT 128

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
            ++   +GV       +  ++              +   +   +    N     +     
Sbjct: 129 QKQV-DEGVPLHICLSQFLKWLQK---------IQKEKKFLFISETPSNAIPETKLCAFV 178

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-------------- 170
             + WDL   +   Y      ++ P   +     K    A  N                 
Sbjct: 179 TWTDWDLG--VCLHYECKRKQLRKPDIFNSWIDLKATYRAFYNRKPKGLSGALQDLGLAF 236

Query: 171 HVNAHDAKADVYATLALVWLI 191
               H    D   T  L W +
Sbjct: 237 VGREHSGLDDSRNTARLAWRL 257


>gi|239907643|ref|YP_002954384.1| hypothetical protein DMR_30070 [Desulfovibrio magneticus RS-1]
 gi|239797509|dbj|BAH76498.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 179

 Score = 44.8 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDR--QWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           ++ D+ET G           A +++D     +K++  + F          +P A  + G+
Sbjct: 4   LVIDFETNGF--YRSSVLSVAAIKIDVDWNLKKVDRLDTFVRHYHPVEKWNPHAQAVNGL 61

Query: 64  TPQKALRDGVV--EAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYY 105
           + +K  R         + +  H   +  +       +N +FD  +
Sbjct: 62  SAKKIERLRTSAEYPAYFKDDHGLTNFASEAVFAVAHNAKFDSSF 106


>gi|161612020|gb|AAI55978.1| hypothetical protein LOC548900 [Xenopus (Silurana) tropicalis]
 gi|161612114|gb|AAI55988.1| hypothetical protein LOC548900 [Xenopus (Silurana) tropicalis]
          Length = 345

 Score = 44.8 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 46/163 (28%), Gaps = 13/163 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             + D+E     G          +F  V ++    +IE     + +P  +       V +
Sbjct: 126 ICVIDFEATCEEGNSTDYTHEIIEFPIVLLNTHTLEIEDVFQRYVRPEINPQLSEFCVNL 185

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT Q  +    +  +  R +  +              +   +         +    R 
Sbjct: 186 TGIT-QDIVDKSDIFPDVLRSVVDWMREKELGTKYKYAILTDGSWDMSKFLNMQCRVSRL 244

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGA 155
            Y  +   W N    + +   V R     +    +     DG 
Sbjct: 245 KYPRFAKKWINIRKSYGNFYKVPRTQTKLTTMLEKLGMTYDGR 287


>gi|320335855|ref|YP_004172566.1| Exonuclease RNase T and DNA polymerase III [Deinococcus
           maricopensis DSM 21211]
 gi|319757144|gb|ADV68901.1| Exonuclease RNase T and DNA polymerase III [Deinococcus
           maricopensis DSM 21211]
          Length = 183

 Score = 44.8 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 11/144 (7%)

Query: 2   TNHFV-IYDYETF---GRDV--ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPD 54
            N+ + + D E     G       +   +     VD     +E  +              
Sbjct: 1   MNNLLNVIDVEATCWDGPTPPGQTNEIIEVGICVVD--LRTLERVDRRRVMVRPGRSEIS 58

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
                +TGIT +     GV   E    + +     +     +        + R       
Sbjct: 59  AFCTDLTGITARDVAD-GVTFTEACAILRRELHADSRPWASW-GDYDRKQFERQCVATGT 116

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAI 138
              +     N  +++ L   +R +
Sbjct: 117 PYPFSARHTNAKAQYALAHTLRRM 140


>gi|322815443|gb|EFZ24097.1| phosphotransferase, putative [Trypanosoma cruzi]
          Length = 579

 Score = 44.8 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 51/192 (26%), Gaps = 5/192 (2%)

Query: 3   NHFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           + +V+ D+E      R +      +F  V +D +  +I +    + +P  + +       
Sbjct: 97  DAYVVLDFEATCERNRRLEEPEIIEFPMVLIDARSHRILTEFQRYVRPVVNPILSDFCTE 156

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI  Q  +              +F                                 R
Sbjct: 157 LTGI-KQSVVDAAETFPLVFDAALEFLRGSGYGEAPPLRSYLFVTCGDWDLKTMLPSQLR 215

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            +   G +        R      P     P++  G    + + LA          H    
Sbjct: 216 TTEKTGTAIVAPPTFRRWCNLKVPMRAIVPTKARGMFDMR-EMLAAVGLPLKGRHHSGID 274

Query: 180 DVYATLALVWLI 191
           D     ++V  +
Sbjct: 275 DCRNIASVVQEL 286


>gi|316970336|gb|EFV54297.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 747

 Score = 44.8 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/202 (10%), Positives = 51/202 (25%), Gaps = 17/202 (8%)

Query: 3   NHFVIYDYETFGRDVALDR---PAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
            + ++ D+E               +F  V    ++   +      + +P           
Sbjct: 552 ENLLVLDFEATCDQPIQIEPQEIIEFPCVNFSLKEDRIVSQFHS-YVRPEVHPNLSSFCT 610

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI             E   +   + +     ++           +   +  N+    
Sbjct: 611 NLTGIVQDMVNNQP-TLTEVLTQFDGWLAEQQ--LLTDEQRDKWTMVTCGSWDLNYQLRN 667

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDA 177
           +  W            +            +P          L  +  + G+EH    H  
Sbjct: 668 QCKWMGHPVPLYFKSWINIKKIACNATGNYPK--------SLIAMMQSLGVEHEGRLHSG 719

Query: 178 KADVYATLALVWLIREKKPKLF 199
             DV   +  V  ++ +K   +
Sbjct: 720 IDDVKNIVRTVQELKRRKQPFY 741


>gi|118602163|ref|YP_903378.1| oligoribonuclease [Candidatus Ruthia magnifica str. Cm
          (Calyptogena magnifica)]
 gi|166216583|sp|A1AVF0|ORN_RUTMC RecName: Full=Oligoribonuclease
 gi|118567102|gb|ABL01907.1| Exonuclease, RNase T and DNA polymerase III [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
          Length = 180

 Score = 44.8 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 15/51 (29%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
            + +  D E  G     D   + A +  + Q   I           D+ L
Sbjct: 4  KTNLIWIDLEMTGLIPEKDVIIEIATIVTNVQLHIIAQGPSLVIHQNDEIL 54


>gi|218898629|ref|YP_002447040.1| exonuclease family protein [Bacillus cereus G9842]
 gi|218544259|gb|ACK96653.1| exonuclease family protein [Bacillus cereus G9842]
          Length = 281

 Score = 44.8 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 28/201 (13%)

Query: 1   MTN--HFVIYDYETFGRDVALDR----PAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
           M N  HF+++D E                    V++     + IE               
Sbjct: 1   MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIKIGTMKIIEEFSEL---VKPSARL 56

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +TGIT +  +       +F + + +F        I  +  + D  +  +    +
Sbjct: 57  TRHTTKLTGITKEDLIG----VEKFPQIVEKFIQFIGEDCIFVSWGKEDYRFLSHDCALH 112

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             +      +N   R DL   +   Y             +   S +     L    E   
Sbjct: 113 GVECPSIEKEN---RIDLQKFVFQAY---------EELFEHTPSLQFAVEQLGLTWE-GK 159

Query: 174 AHDAKADVYATLALVWLIREK 194
            H A AD   T  ++  +  +
Sbjct: 160 QHRALADAENTANILLKVYSE 180


>gi|291298946|ref|YP_003510224.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia
          nassauensis DSM 44728]
 gi|290568166|gb|ADD41131.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia
          nassauensis DSM 44728]
          Length = 191

 Score = 44.8 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 7  IYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
            D E  G D+  D   + A +  D +   ++ 
Sbjct: 2  WIDCEMTGLDLQRDALIEIAVLVTDAELRVLDE 34


>gi|323141646|ref|ZP_08076527.1| exonuclease [Phascolarctobacterium sp. YIT 12067]
 gi|322413861|gb|EFY04699.1| exonuclease [Phascolarctobacterium sp. YIT 12067]
          Length = 216

 Score = 44.8 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 41/139 (29%), Gaps = 10/139 (7%)

Query: 2   TNHFVIYDYE-TF-----GRDV-ALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
              F++ D+E T      GR         +   V++D +        + F  KP      
Sbjct: 1   MKKFLVVDFEFTTYERPVGRPRGFFSEIIEIGAVKLDGEPLTDCGRIQSF-VKPHFYPKQ 59

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
             +++    IT +   +  +      + +   +    T  + +    +    +    ++ 
Sbjct: 60  AKDSMDFCMITAKDMQQA-IEFPAMVQELAALYESGETYFVAWGTEDYKVLQTGCERHKI 118

Query: 114 FYDSYRWSWDNGNSRWDLL 132
                   + +    + L 
Sbjct: 119 ENPVKYEDYLDLALAYRLW 137


>gi|331266470|ref|YP_004326100.1| DNA polymerase III, epsilon chain [Streptococcus oralis Uo5]
 gi|326683142|emb|CBZ00760.1| DNA polymerase III, epsilon chain [Streptococcus oralis Uo5]
          Length = 197

 Score = 44.8 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 36/196 (18%)

Query: 5   FVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +D E    +         Q + VR  +  ++  + + +    A           +TG
Sbjct: 7   YISFDLE---FNQHEGVTHLIQVSAVRF-QDGQESAAFDSYVYTTAPLKS---FINGLTG 59

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF--YRNFYDSYRW 120
           IT +       VE +  +    F       I+GYN  + D          YR+ Y    +
Sbjct: 60  ITAETLKDAPKVE-QVLKDFQAFVGDLP--IVGYNAAKSDLPILLEHGIDYRDQYKVDLY 116

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    DL  +                      + KLQ +A   G  H  +H++  D
Sbjct: 117 EEAFERRSSDLHGIA---------------------NLKLQTVANFLGF-HGKSHNSLED 154

Query: 181 VYATLALVWLIREKKP 196
              T  +     E   
Sbjct: 155 ARMTARVYEAFLESDE 170


>gi|13242610|ref|NP_077624.1| EsV-1-139 [Ectocarpus siliculosus virus 1]
 gi|13177413|gb|AAK14557.1|AF204951_139 EsV-1-139 [Ectocarpus siliculosus virus 1]
          Length = 274

 Score = 44.8 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
             D ET G D   +   +   V  DR   +I+S
Sbjct: 44 FWIDMETTGLDTDTNLILEIVMVVTDRDLNEIDS 77


>gi|150025025|ref|YP_001295851.1| exonuclease [Flavobacterium psychrophilum JIP02/86]
 gi|149771566|emb|CAL43037.1| Probable exonuclease [Flavobacterium psychrophilum JIP02/86]
          Length = 188

 Score = 44.8 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 29/103 (28%), Gaps = 18/103 (17%)

Query: 10  YETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKAL 69
            ET G + A D+      + +++   +I++                       +   + L
Sbjct: 35  IETTGINPAKDKIISIGAIAIEKNQIRIDNCLEIE------------------LNKAEIL 76

Query: 70  RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  +  + I    +      +  + I +D        ++
Sbjct: 77  EGKDFSYQEIQAIESLINFIGNATLVGHRIHYDIQIINEYLHK 119


>gi|150400976|ref|YP_001324742.1| exonuclease RNase T and DNA polymerase III [Methanococcus aeolicus
           Nankai-3]
 gi|150013679|gb|ABR56130.1| Exonuclease RNase T and DNA polymerase III [Methanococcus aeolicus
           Nankai-3]
          Length = 175

 Score = 44.8 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 35/197 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +I D+ET  R        +   ++V   D +++KI++   ++      Y  +  A+ +  
Sbjct: 2   IILDFETNTRKPY--DVIEVGAIKVAFIDGEYKKIDAFHRYYYS---KYGINQRALEVHR 56

Query: 63  ITPQKALR--DGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFYDSY 118
           +TPQK      G   A++ R+ ++F      C  ++ +N      Y    + + N     
Sbjct: 57  LTPQKIKNLRGGENYAKYFRQDNEFIEFCQDCNTLVAHNITFELRYLGDMVTFDNHI--- 113

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                                A +   ++      G    KL +     GI+      H 
Sbjct: 114 ------------------CTMAQNKHIVRAVDIRGGLKPPKLIEACNHYGIDFDEEQYHS 155

Query: 177 AKADVYATLALVWLIRE 193
           A  DV  TL ++  +  
Sbjct: 156 AIYDVTKTLEVLNCMDN 172


>gi|302329867|gb|ADL20061.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275553|gb|ADO25452.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis I19]
          Length = 369

 Score = 44.8 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V    +T G   +  R      V      E+ +              P P    + G++
Sbjct: 43  YVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAV---INPGDNPGPF--HLHGLS 97

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100
            ++    G   +   + + +        +I +N   
Sbjct: 98  REEIA-QGKKFSHILKPLGKLID--GRTLILHNTPY 130


>gi|302205313|gb|ADL09655.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis C231]
          Length = 348

 Score = 44.8 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V    +T G   +  R      V      E+ +              P P    + G++
Sbjct: 22  YVALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAV---INPGDNPGPF--HLHGLS 76

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100
            ++    G   +   + + +        +I +N   
Sbjct: 77  REEIA-QGKKFSHILKPLGKLID--GRTLILHNTPY 109


>gi|147920626|ref|YP_685575.1| hypothetical protein RCIX900 [uncultured methanogenic archaeon
           RC-I]
 gi|110620971|emb|CAJ36249.1| hypothetical protein RCIX900 [uncultured methanogenic archaeon
           RC-I]
          Length = 162

 Score = 44.8 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 24  QFAGVRVDRQWEKIESTEVFFCKPADDYLPDP----EAVFITGITPQKALRDGVVEAEFS 79
               +  D    +    E   C  +   +PDP    +  F+ GITP++       E E  
Sbjct: 2   SIGMLVADIDL-EARRIECRDCMDSLIRIPDPSMAEDTFFVHGITPEQVAAAPAPE-EVC 59

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           R+     S  +    G  N +FD Y+   +F +        SW
Sbjct: 60  RKFLTLHSNHSFTFAGAWNHKFDRYFVDKLFKQTGVRQPGLSW 102


>gi|71651495|ref|XP_814425.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70879394|gb|EAN92574.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 284

 Score = 44.8 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 3   NHFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           + +V+ D+E      R +      +F  V +D +  +I +    + +P  + +       
Sbjct: 57  DAYVVLDFEATCERNRRLEEPEIIEFPMVLIDARSHRILTEFQRYVRPVVNPILSDFCTE 116

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           +TGI  Q  +              +F     
Sbjct: 117 LTGI-KQSVVDAAETFPLVFDAALEFLRGSG 146


>gi|190347963|gb|EDK40337.2| hypothetical protein PGUG_04435 [Meyerozyma guilliermondii ATCC
          6260]
          Length = 528

 Score = 44.8 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 10/95 (10%)

Query: 1  MTNHFVIYDY-----ETFG-RDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
          M++ +V+ +      ET              +   VD    +++   + F  +P +    
Sbjct: 1  MSDVYVVVNTATTCDETNSYVTPDSTELISISWCIVDASTLQELTRNQTF-VRPTN-TPI 58

Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV 88
           P    I GI+ +     G    +   ++      
Sbjct: 59 TPWCTQIHGISWEHVRNAG-TFRDAIDKLEAAVKE 92


>gi|156405487|ref|XP_001640763.1| predicted protein [Nematostella vectensis]
 gi|156227899|gb|EDO48700.1| predicted protein [Nematostella vectensis]
          Length = 277

 Score = 44.8 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 54/196 (27%), Gaps = 28/196 (14%)

Query: 5   FVIYDYETF-------GRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPE 56
           + + D+E         G         +F  V V+ +  E     +  +CKP         
Sbjct: 88  YCVIDFEATCEKENPEG---YQHEIIEFPAVLVNAKTLEIEGEFQQ-YCKPLLKPRLTKF 143

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +TGI+ +   +      +     H +                         +    D
Sbjct: 144 CQELTGISQETVDKSD-NFPQVLDNFHIWLKERG--------------IGTTHKFAVVTD 188

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AH 175
                     ++ ++ ++    ++     ++   R+      KL ++    G+E     H
Sbjct: 189 GPWDIQRFLVTQCEICNINLPKWSRKYINLRKHYRNFYKMKCKLSEMLENLGLEFEGRPH 248

Query: 176 DAKADVYATLALVWLI 191
               D      ++  +
Sbjct: 249 SGLDDSRNIARILIKM 264


>gi|326941253|gb|AEA17149.1| exonuclease [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 281

 Score = 44.8 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 58/208 (27%), Gaps = 28/208 (13%)

Query: 1   MTN--HFVIYDYETFGRDVALDR----PAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
           M N  HF+++D E                    V+++    + IE               
Sbjct: 1   MKNATHFIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSEL---VKPSARL 56

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +TGIT +  +       +   +  QF    +  +       +     R + +  
Sbjct: 57  TRHTTKLTGITKKDLMDVEK-FPQIIEKFIQFIGEDSIFV------SWGKEDYRFLSHDC 109

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                        SR DL   +   Y    +          +  F ++ LAL        
Sbjct: 110 TLHDVECPSIEKESRIDLQKFVFQAYEELFE-------HPPSLQFAVEQLALTW---EGK 159

Query: 174 AHDAKADVYATLALVWLIREKKPKLFEY 201
            H A AD   T  ++  +  ++     Y
Sbjct: 160 QHRALADAENTANILLKVYSERDINKRY 187


>gi|71662500|ref|XP_818256.1| phosphotransferase [Trypanosoma cruzi strain CL Brener]
 gi|70883496|gb|EAN96405.1| phosphotransferase, putative [Trypanosoma cruzi]
          Length = 539

 Score = 44.8 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 3   NHFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           + +V+ D+E      R +      +F  V +D +  +I +    + +P  + +       
Sbjct: 57  DAYVVLDFEATCERNRRLEEPEIIEFPMVLIDARSHRILTEFQRYVRPVVNPILSDFCTE 116

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           +TGI  Q  +              +F     
Sbjct: 117 LTGI-KQSVVDAAETFPLVFDAALEFLRGSG 146


>gi|322501939|emb|CBZ37022.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 188

 Score = 44.4 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 16/167 (9%)

Query: 38  ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGY 96
                 + +P+D       A  + GIT +            +  +  + ++      +  
Sbjct: 13  GRVFHRYVRPSDPRRISAAAAAVHGITWETVQHC-SPWTVAASELVAYMTLVGADAPVSA 71

Query: 97  NNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS-------PDGIQWP 149
           +          +   R           + ++R+    + R  Y              QW 
Sbjct: 72  SAQLEAAQLGGDRAVR--LPPLVAHNASFDARFLEHHLRRCGYQIFWHPQYPLTCTRQWA 129

Query: 150 SRDDGATSFKLQDLALANGIE-----HVNAHDAKADVYATLALVWLI 191
                  +  L  L     I+       N H A  D   T  L   +
Sbjct: 130 QVAYPHLANNLDALCAFLSIDGAADRVANGHGALTDATLTALLFLQM 176


>gi|146096896|ref|XP_001467969.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           infantum JPCM5]
 gi|134072335|emb|CAM71041.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           infantum JPCM5]
          Length = 188

 Score = 44.4 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 16/167 (9%)

Query: 38  ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGY 96
                 + +P+D       A  + GIT +            +  +  + ++      +  
Sbjct: 13  GRVFHRYVRPSDPRRISAAAAAVHGITWETVQHC-SPWTVAASELVAYMTLVGADAPVSA 71

Query: 97  NNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS-------PDGIQWP 149
           +          +   R           + ++R+    + R  Y              QW 
Sbjct: 72  SAQLEAAQLGGDRAVR--LPPLVAHNASFDARFLEHHLRRCGYQIFWHPQYPLTCTRQWA 129

Query: 150 SRDDGATSFKLQDLALANGIE-----HVNAHDAKADVYATLALVWLI 191
                  +  L  L     I+       N H A  D   T  L   +
Sbjct: 130 QVAYPHLANNLDALCAFLSIDGAADRVANGHGALTDATLTALLFLQM 176


>gi|332284719|ref|YP_004416630.1| hypothetical protein PT7_1466 [Pusillimonas sp. T7-7]
 gi|330428672|gb|AEC20006.1| hypothetical protein PT7_1466 [Pusillimonas sp. T7-7]
          Length = 169

 Score = 44.4 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 7/117 (5%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITGIT--PQ 66
           E  G D   +R  + A V  +     +    V     +D  L   D       G +    
Sbjct: 2   EMTGLDPEKERIIEVAVVVTEPDLSFVAEGPVLVIHQSDALLDAMDKWNQSTHGKSGLID 61

Query: 67  KALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           K     + EA+   ++  F +         +  N I  D  +      R     +  
Sbjct: 62  KVKASTLTEAQAEEQLLAFLAQHVPSGKSPMCGNTIGQDRRFMVKYMPRLEAFFHYR 118


>gi|297671405|ref|XP_002813830.1| PREDICTED: three prime repair exonuclease 1-like [Pongo abelii]
          Length = 314

 Score = 44.4 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 33/210 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST-----------------EVFF 44
               + +D E  G   +  +  +   + V R    +ES                  +   
Sbjct: 11  MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPISQGPPPTVPPPPRVVDKLS 68

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100
              A      P A  ITG++       G     +    +   F        C++ +N  R
Sbjct: 69  LCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 128

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +             S  +G    D +  ++     + +    PS      S+ L
Sbjct: 129 YDFPLLQAELALLGL----TSALDGAFCVDSITALK-----ALERASSPSEHGPRKSYSL 179

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 180 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 209


>gi|291517508|emb|CBK71124.1| Oligoribonuclease (3'->5' exoribonuclease) [Bifidobacterium longum
           subsp. longum F8]
          Length = 214

 Score = 44.4 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 45/182 (24%), Gaps = 15/182 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D ET G D       +      D + E    +      P +         +     
Sbjct: 26  LLWIDTETTGLDPNQCELLEVGMQVTDLKAETRGDSLHLIVHPDNVRN------WANH-- 77

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          E         +       GY+           +  +    +   +  N
Sbjct: 78  PEMLKA-----YEMHLANGLMLACAEAPKTGYDYKHTALNIHEFLNDQLSQYTLHPAGTN 132

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +     LDV  + +   P       R    TSF+L D A   G      H     V   
Sbjct: 133 VDFDLRQLDVHLSRHLEHPITQGLHHRKLDLTSFRLADQA--IGGNPYQNHAGTHRVQDC 190

Query: 185 LA 186
           + 
Sbjct: 191 IR 192


>gi|329888661|ref|ZP_08267259.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847217|gb|EGF96779.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
          Length = 228

 Score = 44.4 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 25/100 (25%), Gaps = 8/100 (8%)

Query: 8   YDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            D+ET G +       ++    +  D     +   +             PE   +  IT 
Sbjct: 2   IDFETTGMEPPTAEVIEYGWCDLTNDGSGWIVGKPQAHLYSVGS---IPPETRAVHHITM 58

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
                      E    +H      +     +N    D + 
Sbjct: 59  SDLADVVTHFDEA--EVHNPIEDVS-VFAAHNLAFEDLFI 95


>gi|323451416|gb|EGB07293.1| hypothetical protein AURANDRAFT_14950 [Aureococcus anophagefferens]
          Length = 191

 Score = 44.4 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 48/192 (25%), Gaps = 19/192 (9%)

Query: 8   YDYETFGRDVALD---RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            D+E    +   D      +F  V  D R  E  +S    + +P ++         +TGI
Sbjct: 1   LDFECT-CEPGWDYIHEIIEFPVVLFDTRTREITDSFHS-YVRPTENATLSAFCTDLTGI 58

Query: 64  TPQKALRDGVVEAEFSRRIHQFF-------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
                        E    +  +        + P        +    +++      R    
Sbjct: 59  EQATVDAAP-TLPEVLDDLDAWLRARGLVGAEPAASFALATDGWDLEHFLDVELSRKLLY 117

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-H 175
                  +   RW  L     +   + D      +        L  +   + +E     H
Sbjct: 118 KPG----DYLDRWVDLSKAFDLRRAAKDVENGRKKGRSRRRSNLNTMLRHHKMEFEGRLH 173

Query: 176 DAKADVYATLAL 187
               D      +
Sbjct: 174 SGIDDATNLARV 185


>gi|218778072|ref|YP_002429390.1| exonuclease RNase T and DNA polymerase III [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759456|gb|ACL01922.1| Exonuclease RNase T and DNA polymerase III [Desulfatibacillum
           alkenivorans AK-01]
          Length = 175

 Score = 44.4 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 9/111 (8%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT-- 61
           V  D E  G +       + A +  D     +              L   DP ++     
Sbjct: 2   VWIDMEMTGLNPDNSVIVEIATLITDGDLNLVAEGPELAIFHPPHVLENIDPWSLDQHTA 61

Query: 62  -GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
            G+   +     V  A+  +    F         C +  N++  D  +   
Sbjct: 62  SGLLD-RVKASDVDTAQAEKLTLDFIKEYCAEKECPLAGNSVWQDRRFMVK 111


>gi|187932764|ref|YP_001885887.1| exonuclease [Clostridium botulinum B str. Eklund 17B]
 gi|187720917|gb|ACD22138.1| putative exonuclease [Clostridium botulinum B str. Eklund 17B]
          Length = 974

 Score = 44.4 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 36/106 (33%), Gaps = 7/106 (6%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +  D ET G D       +   V++ +      +T     +P  +       +   G
Sbjct: 9   DNVIYLDIETTGLDENNCEIIEIGAVKI-KNSNV--TTYEVLIRPKRNVPISIYKLCQ-G 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
           +  ++ +    +E +    +  F       +I +N      + S +
Sbjct: 65  LKEEELMNSKYLE-DIKNELLVFLEDLP--LICHNGGFERKFLSCH 107


>gi|302326392|gb|ADL25593.1| oligoribonuclease [Fibrobacter succinogenes subsp. succinogenes
          S85]
          Length = 185

 Score = 44.4 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 12/38 (31%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          + + V  D E  G     D   + A +  D     +  
Sbjct: 11 SRNLVWMDLEMSGLYPEKDVILEIATIVTDANLNILAE 48


>gi|118387765|ref|XP_001026985.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89308755|gb|EAS06743.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 251

 Score = 44.4 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/214 (10%), Positives = 55/214 (25%), Gaps = 21/214 (9%)

Query: 5   FVIYDYETFGRDVAL---DRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFI 60
            +I D+E    +          +F  V +D +   I       + KP    +       +
Sbjct: 21  LLILDFEATCSNDEKLNVQEIIEFPIVILDLKKNVILPEYFHTYVKPTYHPILTKFCTEL 80

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-----IIGYNNIRFDDYYSRNIFYRNFY 115
           T IT ++   +GV+     ++  +F +           +   +            ++   
Sbjct: 81  THITQEQV-DNGVILESAIQQADEFLNKMGIIDKKFAFVCCGDFDLGQCLRLEAKFKKIN 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +       +            ++   I+W          K  +L           H
Sbjct: 140 YPQYFKQYINIKKQ------FPKEWYTESIIKWNKPPGMVAMLKAINL-----ELQGTHH 188

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
               D      +   + E      + +     ++
Sbjct: 189 SGLDDSKNIARIAQFMVEHNIVWTKEMLSQVQRD 222


>gi|145545418|ref|XP_001458393.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426213|emb|CAK90996.1| unnamed protein product [Paramecium tetraurelia]
          Length = 595

 Score = 44.4 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/207 (9%), Positives = 64/207 (30%), Gaps = 6/207 (2%)

Query: 259 SGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWG 318
               +V +++   +L         +L+    +  +    +    ++ ++       +   
Sbjct: 204 KTQPKVNKEVTIKELEILNTKLMKDLEERNYIIDQLKKDDNKVKIIKLEKQMLPLRKENQ 263

Query: 319 IDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL-YDGFFADVDRQIMDRIL 377
           +  ++  + +T L  ++      +  +      S +     L Y        +     I 
Sbjct: 264 LLKEQISQYITELDMRSLDYQEMQTNFKNSLLESDRLQQYNLNYQKQIEQFQQNKEIEIH 323

Query: 378 RTAPE-QLSTLNLPFSDRRLPELFFRY-RARNFPHTLSEKEKQDWLEHRKKMLTRSRIEE 435
               + +     L   D  + +L       +    + S+  +    EH  + +    I +
Sbjct: 324 DLNSQIENLKQQLQSKDEMIQQLSKHLAIFQ---KSQSQNAQLQLHEHYAEKIQSQNIAD 380

Query: 436 YKNKLQSLSGEYKGDEGKEGLINALYE 462
              ++  L  +   D+ +   ++ + E
Sbjct: 381 LLKEIDELKKKTFEDKNEIKQLSKVNE 407


>gi|261417450|ref|YP_003251133.1| Exonuclease RNase T and DNA polymerase III [Fibrobacter
          succinogenes subsp. succinogenes S85]
 gi|261373906|gb|ACX76651.1| Exonuclease RNase T and DNA polymerase III [Fibrobacter
          succinogenes subsp. succinogenes S85]
          Length = 179

 Score = 44.4 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 12/38 (31%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          + + V  D E  G     D   + A +  D     +  
Sbjct: 5  SRNLVWMDLEMSGLYPEKDVILEIATIVTDANLNILAE 42


>gi|313114310|ref|ZP_07799845.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623365|gb|EFQ06785.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 143

 Score = 44.4 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 25/155 (16%)

Query: 41  EVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100
                +  ++     E   +TG++  +    G    E    ++ F        +  +NI 
Sbjct: 12  LSMLVRVEENV--PAEITALTGLSAAELQ-QGTEPREA---LNSFLLFIGKDPLVGHNIA 65

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           FD  + R    R  + +            DL  + R                    ++KL
Sbjct: 66  FDLEFLRMTCKRYGFPAPTNRQ------IDLAQLAR-------------RNLTRIANYKL 106

Query: 161 QDLALANGIEHVNAHDAKADVYATLALVWLIREKK 195
             LA    +     H A  D      +   ++E  
Sbjct: 107 VTLAQHFQLAEKVEHRALPDCRLIQQVYCKLKETA 141


>gi|1550617|dbj|BAA12312.1| RNase T [Vibrio alginolyticus]
          Length = 125

 Score = 44.4 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V  ++D        ST  F  +P +    + EA+   G
Sbjct: 20  VVVDVETAGFNAQTDALLEICTVTLKMDEDGVLHPASTIHFHVEPFEGANLEKEALEFNG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFFSV 88
           I  P   LR  V E E  + I++    
Sbjct: 80  IRDPYSPLRGAVSEQEALKEIYKLIRK 106


>gi|330979930|gb|EGH78228.1| exonuclease [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 95

 Score = 44.4 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
          V+ D ET G ++  D+      V ++     +            D+   P  +
Sbjct: 44 VVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERT-LLRVDHKISPAVL 95


>gi|154314837|ref|XP_001556742.1| hypothetical protein BC1G_04760 [Botryotinia fuckeliana B05.10]
 gi|150848298|gb|EDN23491.1| hypothetical protein BC1G_04760 [Botryotinia fuckeliana B05.10]
          Length = 180

 Score = 44.4 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 17/123 (13%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIEST---------EVFFCKPADDYLPDPEAVFIT 61
           E  G DV  D   + + V  +   E ++           +    K  +       +   T
Sbjct: 3   EMTGLDVENDVIIEISCVITNGNLEVMDEKGWNAVIHQDQETMDKMDEWCTTTHAS---T 59

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIFYRNFYDS 117
           G+T  + L       E +  + Q+           ++  N++  D  +     Y+   + 
Sbjct: 60  GLT-SEVLSSTTTPTEAAESLLQYIKSWVPEPRRALLAGNSVHADKAFLSKGPYKQVIEH 118

Query: 118 YRW 120
             +
Sbjct: 119 LHY 121


>gi|294102555|ref|YP_003554413.1| hypothetical protein Amico_1573 [Aminobacterium colombiense DSM
           12261]
 gi|293617535|gb|ADE57689.1| hypothetical protein Amico_1573 [Aminobacterium colombiense DSM
           12261]
          Length = 263

 Score = 44.4 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 57/204 (27%), Gaps = 39/204 (19%)

Query: 4   HFVIYDYETFGRDVALDRPAQFA-------GVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           +F ++D ET G                    +  D +    +    F+        PD  
Sbjct: 2   NFAVFDLETNGLK---------GSSVVSASSIVFDDRGHIRDFFNRFYF---PTETPDYA 49

Query: 57  AVFITGITPQKA----LRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
              I G+T ++       +       E    +  F+   +   I  +N+ FD  +     
Sbjct: 50  TEKIHGLTVERIHWFRQTEPYPLYFLEDVDALLSFWKKWHVSGIVVHNLAFDTSFLPRET 109

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
            +   D   W    G + W  +         +    +WP  ++            +    
Sbjct: 110 VK---DWKWWCSMIGLTNWCAIP-----NPKNAALYKWPRLNEAKMKTITHLKTPSIVKT 161

Query: 171 HVNA------HDAKADVYATLALV 188
             +A      H + +D +    + 
Sbjct: 162 IEDALPSEIGHYSLSDCFELYGIF 185


>gi|125571192|gb|EAZ12707.1| hypothetical protein OsJ_02624 [Oryza sativa Japonica Group]
          Length = 304

 Score = 44.4 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 3   NHFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +HFV+ D+E     GR +      +F  V VD    ++ S    + +P            
Sbjct: 28  DHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFCRE 87

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           +TGI        GV  AE   R  ++     
Sbjct: 88  LTGIAQGDV-DAGVGLAEALLRHDEWLRAAG 117


>gi|125526866|gb|EAY74980.1| hypothetical protein OsI_02878 [Oryza sativa Indica Group]
          Length = 304

 Score = 44.4 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 3   NHFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +HFV+ D+E     GR +      +F  V VD    ++ S    + +P            
Sbjct: 28  DHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFCRE 87

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           +TGI        GV  AE   R  ++     
Sbjct: 88  LTGIAQGDV-DAGVGLAEALLRHDEWLRAAG 117


>gi|115438614|ref|NP_001043587.1| Os01g0618000 [Oryza sativa Japonica Group]
 gi|54290428|dbj|BAD61298.1| unknown protein [Oryza sativa Japonica Group]
 gi|113533118|dbj|BAF05501.1| Os01g0618000 [Oryza sativa Japonica Group]
 gi|215693971|dbj|BAG89138.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 304

 Score = 44.4 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 3   NHFVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +HFV+ D+E     GR +      +F  V VD    ++ S    + +P            
Sbjct: 28  DHFVVVDFEATCERGRRIYPQEIIEFPAVLVDAATGRLVSAFRAYVRPRHHPRLTDFCRE 87

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           +TGI        GV  AE   R  ++     
Sbjct: 88  LTGIAQGDV-DAGVGLAEALLRHDEWLRAAG 117


>gi|296273794|ref|YP_003656425.1| exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097968|gb|ADG93918.1| Exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
           DSM 7299]
          Length = 173

 Score = 44.4 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 63/196 (32%), Gaps = 35/196 (17%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVR---VDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +I D+ET           + A V+   V+ ++   +    ++      Y  +P +  +  
Sbjct: 2   IILDFETN--SHNEHDVIEAAAVKLELVNGEYVVCDKFHRYY---LSRYPVNPYSYEVHK 56

Query: 63  ITPQKALR--DGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFYDSY 118
           +TP+  L+       A + +    F    +    ++ +N      +  + + ++N     
Sbjct: 57  LTPEAILKIRQNSSYASYFKEDEDFVEFCSGVETLVAHNISFELRHLRQIVNFKNH---- 112

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HD 176
                        +  M+          +     +      L ++    GIE      H 
Sbjct: 113 -------------ICTMKENKHIVKALNKNAKIKNPT----LDEVCFYYGIEFDENKHHS 155

Query: 177 AKADVYATLALVWLIR 192
           A  DV  T  ++  ++
Sbjct: 156 ATYDVSKTFEILKRMK 171


>gi|323138715|ref|ZP_08073781.1| hypothetical protein Met49242DRAFT_3169 [Methylocystis sp. ATCC
          49242]
 gi|322396070|gb|EFX98605.1| hypothetical protein Met49242DRAFT_3169 [Methylocystis sp. ATCC
          49242]
          Length = 187

 Score = 44.4 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP---DPEAVFITG 62
          V YD E  G D       +     V+    +I S        ++  +    D  A  + G
Sbjct: 8  VFYDCEASGLDGF---VIEIGWAFVNPSNGQIVSASYLVRPLSEWRIETSWDENAGELHG 64

Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS 87
          I+       GV   + +  ++   +
Sbjct: 65 ISLADLYARGVPVHDIANAMNHALA 89


>gi|325068353|ref|ZP_08127026.1| Exonuclease RNase T and DNA polymerase III [Actinomyces oris K20]
          Length = 210

 Score = 44.4 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
          ++  V  D E  G D + D   + A V  D + + +        KP 
Sbjct: 11 SDPLVWIDCEMTGLDQSADALIEVAVVVTDYELKPLAEGIDVLIKPP 57


>gi|326773762|ref|ZP_08233045.1| oligoribonuclease [Actinomyces viscosus C505]
 gi|326636992|gb|EGE37895.1| oligoribonuclease [Actinomyces viscosus C505]
          Length = 210

 Score = 44.4 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
          ++  V  D E  G D + D   + A V  D + + +        KP 
Sbjct: 11 SDPLVWIDCEMTGLDQSADALIEVAVVVTDYELKPLAEGIDVLIKPP 57


>gi|167949791|ref|ZP_02536865.1| exonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 44

 Score = 44.4 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 42 VFFCKPADDYLPDPEAVFITGITPQKALRDGVV 74
          V + +P+DD LP PEA  +TGI+PQ A   GV 
Sbjct: 2  VIYSRPSDDMLPQPEACMVTGISPQLAYAKGVP 34


>gi|289547982|ref|YP_003472970.1| exonuclease RNase T and DNA polymerase III [Thermocrinis albus DSM
           14484]
 gi|289181599|gb|ADC88843.1| Exonuclease RNase T and DNA polymerase III [Thermocrinis albus DSM
           14484]
          Length = 208

 Score = 44.4 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 51/195 (26%), Gaps = 37/195 (18%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           FV+ D ET    G ++          ++V             F         D   + + 
Sbjct: 38  FVVLDTETSDIKGTNL-----LSVGALKV---VNLTLDLSTAFHVTVKSTPTDHTGIKVH 89

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GITP      G+ E E       F +     ++    +  D         R+    +   
Sbjct: 90  GITPHDIR-QGMKEEEVCDL---FLAYAKGSVLVGYFLDLDIRAINRALRRHKKPPF--- 142

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                                P             +  L++L L  G+     H A  D 
Sbjct: 143 -------------------CPPSLDLLDLLPPSKKNIPLEELLLHYGLPVTQRHSAIEDA 183

Query: 182 YATLALVWLIREKKP 196
           Y T  L  ++  K  
Sbjct: 184 YMTALLFLVLMTKHR 198


>gi|118346813|ref|XP_977115.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89288652|gb|EAR86640.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1363

 Score = 44.4 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 13/195 (6%)

Query: 21  RPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
              +F  + +D + E  I++    + KP      +P    ITGI  +          +  
Sbjct: 721 EIIEFPVLVIDLKKERIIDTFHT-YVKPTTFPKINPYISKITGIQQKDVANAP-SFVQVI 778

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           +++  F          Y      D  S   + ++ +        N     D+      + 
Sbjct: 779 QKVEAFLQKYKD----YEGCILYDCDSDCNYMKSEF-----INKNYIPTSDVFFSYINLR 829

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWL-IREKKPKL 198
              P  I     +   +  +        G +H    DA+      + LV       +  +
Sbjct: 830 NVFPLEISGGVINKSLSHAQQVLQMEFQGCKHKGIDDARNQALVCIELVKRGYSFTQFMI 889

Query: 199 FEYLYDYRNKNQLRK 213
                    K  ++ 
Sbjct: 890 QPQFLKQDPKCCVKN 904


>gi|311113467|ref|YP_003984689.1| oligoribonuclease [Rothia dentocariosa ATCC 17931]
 gi|310944961|gb|ADP41255.1| oligoribonuclease [Rothia dentocariosa ATCC 17931]
          Length = 197

 Score = 44.4 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/200 (11%), Positives = 48/200 (24%), Gaps = 53/200 (26%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI------------ 60
            G D+  D   +   +  D     +        KP         A+              
Sbjct: 2   TGLDLTQDALIEIGVLVTDSDLNILGEGVELVIKP--GSEAPAGALENMNSYVRKMHESS 59

Query: 61  -------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                   G++  +A           + + ++  V     +G N++  D  +        
Sbjct: 60  GLLEDLEHGVSMHEAQEA------VLKYVKKYVPVAGKAQLGGNSVGMDKRFLER----- 108

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                           D+ D+M+ ++    D                   A  N      
Sbjct: 109 ----------------DMPDLMKHLHYRVIDVSTIKELAARW-----YPAARHNAPVKTG 147

Query: 174 AHDAKADVYATLALVWLIRE 193
            H A  D+  ++  +   R 
Sbjct: 148 NHRALGDIKDSIDELKYYRH 167


>gi|126698941|ref|YP_001087838.1| putative exonuclease [Clostridium difficile 630]
          Length = 220

 Score = 44.4 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 51/190 (26%), Gaps = 21/190 (11%)

Query: 30  VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP 89
           +D ++  I++    + KP       P    +T I             E      +F S  
Sbjct: 1   MDSKFNIIDTFNS-YIKPTIYKDIHPFISRMTNIKNSDFNDSP-TFPEVYNNFIKFISSQ 58

Query: 90  NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWP 149
           +  +  +              YRN       S     S  ++                  
Sbjct: 59  DPILCVWGAGDL------KELYRNINYHKLPSNSLPKSYINI-----------QQHASKY 101

Query: 150 SRDDGATSFKLQDLALANGIEHVNA-HDAKADVYATLALVWLIREKKPKLFEYLYDYRNK 208
             +    S  LQ+      ++   + H+A  D Y T  +   I      + +       K
Sbjct: 102 FNNPAGKSIGLQNAISILELDEKMSYHNALNDAYYTAKVFIKIYNP-SIVPDIYLYTSIK 160

Query: 209 NQLRKLIDIQ 218
            +  +  + +
Sbjct: 161 PKTIRYSNKK 170


>gi|254572319|ref|XP_002493269.1| Protein of unknown function, rich in asparagine residues [Pichia
           pastoris GS115]
 gi|238033067|emb|CAY71090.1| Protein of unknown function, rich in asparagine residues [Pichia
           pastoris GS115]
 gi|328352715|emb|CCA39113.1| Uncharacterized RNA-binding protein C17H9.04c [Pichia pastoris CBS
           7435]
          Length = 641

 Score = 44.4 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 20/218 (9%)

Query: 1   MTNHFVIYDYETF----GRDVALD--RPAQFAGVRVDR--QWEKIESTEVFFCKPADDYL 52
           M++ +++    T      +    D     + A V +D    +E +    V   KP +   
Sbjct: 1   MSDRYIVLHINTTANESSQQFKRDPSEIIELAWVLLDPGTNFEIVGRGSVL-AKPFN-TP 58

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS 106
             P    +T +T +     G    +    + +F          +   I  N         
Sbjct: 59  ITPLCTSMTTLTWESVKNAG-SLKDAVEELSRFIDSNLVSNGLSFSFITLNAWDLRLKLP 117

Query: 107 RNIFYRNF-YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA- 164
           +    R+    +Y       + R +     +   A + +G         +       L  
Sbjct: 118 KESRERSIALPAYLDLPKYFDLRKEFCRWAQKSSALTTNGNHMSLAYMVSKLETEASLVL 177

Query: 165 -LANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201
                 +  +A  A  D   T  +   + +    LF+ 
Sbjct: 178 DEDLRSKVNSARRAHVDAELTAKVAATLLKSNSGLFQK 215


>gi|90424784|ref|YP_533154.1| exonuclease [Rhodopseudomonas palustris BisB18]
 gi|90106798|gb|ABD88835.1| Exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 314

 Score = 44.4 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 54/181 (29%), Gaps = 29/181 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
             +  D+ET   +     P       ++R  + +   E    KP +      EA  + G+
Sbjct: 2   SILAIDFET--ANEKRSSPCALGLAWIER-GQIVRR-EYRLIKPKEMRFGVFEA-KVHGL 56

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
           +P +         EF   I +F S   + ++  +N +FD                     
Sbjct: 57  SPSEVKDA----QEFPEVISEFLSDIQSGLLLAHNAQFDVDVLCATLALYGIAI------ 106

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
               R+  L   R       D            S KL  L    GI     H A  D +A
Sbjct: 107 ---PRFSFLCSQRVASRVWSD----------EKSLKLSALGEKLGISF-RHHQADEDAFA 152

Query: 184 T 184
            
Sbjct: 153 C 153


>gi|322488732|emb|CBZ23979.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 879

 Score = 44.4 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 38/148 (25%), Gaps = 18/148 (12%)

Query: 5   FVIYDYETFGRDVALD-------RPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPE 56
            ++ D+E                   +F  V VD + +  +      F +P       P 
Sbjct: 631 LLVLDFEAT---CEEHPPPNYLYEIIEFPVVVVDVRLQRVVAEFH-RFVRPRYKRELSPF 686

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFY 111
              +TG+  +          E  R+  ++ S           +    +   ++   +   
Sbjct: 687 CKKLTGMRQEDV-DAAASLEEVVRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSVS 745

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           R         +   + +       R   
Sbjct: 746 RQGIRFPSLFYQFIDVKQTFACFFRCSQ 773


>gi|283783530|ref|YP_003374284.1| exonuclease [Gardnerella vaginalis 409-05]
 gi|298252612|ref|ZP_06976406.1| oligoribonuclease [Gardnerella vaginalis 5-1]
 gi|283441129|gb|ADB13595.1| exonuclease [Gardnerella vaginalis 409-05]
 gi|297532976|gb|EFH71860.1| oligoribonuclease [Gardnerella vaginalis 5-1]
          Length = 235

 Score = 44.4 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 10/125 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD--PEAVFIT- 61
            +  D E  G D+  D   + + V  D   + ++       KP+D  +         +  
Sbjct: 17  LIWIDCEMTGLDIFHDELCEVSVVPTDFNLKVLDDGIDLVIKPSDAAVAHMNDFVRNMHT 76

Query: 62  --GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
             G+  +   ++G+   E        + +F        +  N++  D  +          
Sbjct: 77  SSGLVDE-WNKNGLSLEETQKQVVEYVKRFLPARGKAHLAGNSVGSDKKFLDRYMPDLMA 135

Query: 116 DSYRW 120
           + +  
Sbjct: 136 NLHYR 140


>gi|290970730|ref|XP_002668233.1| predicted protein [Naegleria gruberi]
 gi|284081517|gb|EFC35489.1| predicted protein [Naegleria gruberi]
          Length = 1135

 Score = 44.4 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 16/224 (7%)

Query: 6    VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            V+ D ET G         Q   + +  +          + KP         A  +     
Sbjct: 890  VVLDLETTGLMPNDHEIVQVGMISLISKCA-----FSIYIKPKYHDW-SSHAKKLH--VD 941

Query: 66   QKAL-RDGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
            +     +G    +    IH + +  N+C  ++  ++   D  +      ++     R+  
Sbjct: 942  KMNEINNGKQLDQIIIPIHNYLTKNNSCTAVVLVHSTSLDRNFLMKALTKHGLPIDRYMI 1001

Query: 123  DNG-----NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
             N        +  L  +   +        +         +F    L      +  +  D 
Sbjct: 1002 VNTISEEFFPKQKLETLFNQVNKPMNTTTKDIIGVAHDAAFDTAMLFDIIKHKFGDNIDG 1061

Query: 178  KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
              +            +K+ K    +   R K +        +  
Sbjct: 1062 VLEACMCFHGRLCGDKKRKKPNHDINTKRKKKKTEPNTSSDHFF 1105


>gi|319938044|ref|ZP_08012444.1| hypothetical protein HMPREF9488_03280 [Coprobacillus sp. 29_1]
 gi|319806950|gb|EFW03589.1| hypothetical protein HMPREF9488_03280 [Coprobacillus sp. 29_1]
          Length = 190

 Score = 44.0 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 20/188 (10%)

Query: 5   FVIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +++ D E F ++       + A   +   R  E+I   + F        +P    + +TG
Sbjct: 9   YIVIDLE-FSKERNKTEIFELAAKKIYTTRYGERIIEGDKFRRIIKPHNIPSNSILSLTG 67

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           ++  + L   +  +E  +   ++    N   +  +    D    R     N ++      
Sbjct: 68  VSRDEILSS-INFSEVFKEFLKWIHKDNLETLYVSWGPRDSAVLRVNCKDNGFE----KE 122

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            N  +  DL   +                     S  +Q +    G      H A  D Y
Sbjct: 123 FNEMTFIDLQSYIMEQ-----------ENFQQLPSL-MQIVEKEFGEFKGTEHHASYDAY 170

Query: 183 ATLALVWL 190
            T  L+  
Sbjct: 171 NTALLMKK 178


>gi|56461400|ref|YP_156681.1| oligoribonuclease [Idiomarina loihiensis L2TR]
 gi|81821669|sp|Q5QVW2|ORN_IDILO RecName: Full=Oligoribonuclease
 gi|56180410|gb|AAV83132.1| Oligoribonuclease (3'->5' exoribonuclease) [Idiomarina loihiensis
          L2TR]
          Length = 183

 Score = 44.0 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 12/38 (31%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
              +  D E  G +   +   + A +  D Q   +  
Sbjct: 7  KQRLIWIDLEMTGLEPDENHIIEVATIVTDAQLNTLAE 44


>gi|237711880|ref|ZP_04542361.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|317474976|ref|ZP_07934245.1| hypothetical protein HMPREF1016_01224 [Bacteroides eggerthii
           1_2_48FAA]
 gi|229454575|gb|EEO60296.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|316908879|gb|EFV30564.1| hypothetical protein HMPREF1016_01224 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 255

 Score = 44.0 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 37/244 (15%)

Query: 8   YDYETFGRDVALDRPAQFA--GVRVDRQWEKIESTEVFFCK--------PAD-------- 49
            D+ET G D       Q A   VR D  W+  +  + +           P          
Sbjct: 15  LDFETGGLDCRECACTQIALQAVRFD-TWQVFDRYQAYIAPYGKQDAGLPRRKVLRTRHE 73

Query: 50  -----DYLP---DPEAVFITGITPQKALRDGVVEAEFSRRIHQF-----FSVPNTC--II 94
                +Y+P   +  A+  + IT +     G+   + +  +  F      S  N C  ++
Sbjct: 74  QAKGQEYVPMKYEQAALDYSAITMEMLRTQGMDMKKVAGEVIAFAKRATLSKGNQCKPVL 133

Query: 95  GYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG 154
              NI FD  + + +       +      +G+   D     +  Y  +    +     D 
Sbjct: 134 VGQNIAFDIGFLQQLVNYAGLAAEFEKTFSGSR--DYYGNFQPHYIDTLALGRLAFAADP 191

Query: 155 A-TSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
             TS+KL+ +A   G+E  +AHDA ADV ATL ++ +   +  +        + K + RK
Sbjct: 192 EVTSYKLELVASRLGVELDDAHDAAADVTATLDILGVYTSRLRQTEGTATAMQKKEKTRK 251

Query: 214 LIDI 217
              I
Sbjct: 252 YFKI 255


>gi|325675967|ref|ZP_08155650.1| oligoribonuclease [Rhodococcus equi ATCC 33707]
 gi|325553205|gb|EGD22884.1| oligoribonuclease [Rhodococcus equi ATCC 33707]
          Length = 188

 Score = 44.0 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 12/139 (8%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT---GITPQK 67
            G  +  D+  + A +  D     +           D+ L         +    G+T ++
Sbjct: 2   TGLRLGSDKLIEIAALVTDSDLNILGEGVDIVIHADDEALADMPDVVTQMHAKSGLT-EE 60

Query: 68  ALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
                V  AE        I +   V  T  +  N+I  D  +          DS+     
Sbjct: 61  VRASTVTLAEAEQMVLAYIREHVPVAGTVPLAGNSIATDRGFI--ARDMPELDSHLHYRM 118

Query: 124 NGNSRWDLLDVMRAIYAFS 142
              S    L        + 
Sbjct: 119 IDVSSIKELCRRWYPRIYF 137


>gi|241896984|ref|NP_001155946.1| exoribonuclease 1 [Acyrthosiphon pisum]
          Length = 340

 Score = 44.0 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 17/194 (8%)

Query: 5   FVIYDYETFGR-----DVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
           FV+ D E         D       +F  V VD ++ + I+  + F  KP+ +       +
Sbjct: 95  FVVIDIEATCTENNPADYKF-EIIEFPAVLVDAKKRKIIDHFQAF-VKPSINPKLSEFCI 152

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT  +             R  ++       I    +I  D  +    F        
Sbjct: 153 KLTGITQDQIDNAD-SFEVCLTRFTKWLEEHELGIKHKFSIVTDGPFDMARFLYGQCLMS 211

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDA 177
              +    ++W  +  +   + F+            +    L  +     +E   N H  
Sbjct: 212 EIPYPKFATKWINIRKVFKAFYFTKQV-------KYSVPCNLNAMLTFLDMEFEGNPHSG 264

Query: 178 KADVYATLALVWLI 191
             D +    +   +
Sbjct: 265 LDDSFNISRICIRL 278


>gi|219109276|pdb|3CG7|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
 gi|219109277|pdb|3CG7|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
 gi|219109290|pdb|3CM5|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
           Bound With Mn
 gi|219109291|pdb|3CM5|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
           Bound With Mn
 gi|219109292|pdb|3CM6|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
           Bound With Er
 gi|219109293|pdb|3CM6|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
           Bound With Er
          Length = 308

 Score = 44.0 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 73/289 (25%), Gaps = 18/289 (6%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEA 57
           +  +I D+ET       D      QFA V  D   +KI     F  + KP  +       
Sbjct: 19  DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNC 78

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYD 116
           V  TGI PQ+++           +  Q+                      R   Y+    
Sbjct: 79  VDFTGI-PQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLS 137

Query: 117 SYRWS-WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
           + +   +         +           +     +       + L  +          AH
Sbjct: 138 NIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTI--------GRAH 189

Query: 176 DAKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           DA  D      ++  +I          L       + + L+  +       +       R
Sbjct: 190 DAMDDCLNIATILQRMINMGAKVTVNELLTCCASWRRQPLVYNKEWRS-SFMDAGKIFER 248

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283
               ++  +       +    C               Q    L+ + ++
Sbjct: 249 VLPLVVTTIRAGDFRLEMYGVCRYCRKGMDVCGTSHQQTPHDLYKNEED 297


>gi|116493991|ref|YP_805725.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus casei ATCC
           334]
 gi|116104141|gb|ABJ69283.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus casei ATCC 334]
          Length = 470

 Score = 44.0 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 5   FVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +++ D E        ++    + + +RV    +   + ++F   P D ++  P +V ITG
Sbjct: 275 YIVIDTE---FVADRNQLDLTEISLLRVRHH-QVDGAFDIFTQLPEDHHVM-PFSVKITG 329

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS 87
           IT     + G         + Q   
Sbjct: 330 ITDDLLSQYGQPLPLAKAAVEQLLK 354


>gi|239629477|ref|ZP_04672508.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065577|ref|YP_003787600.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239528163|gb|EEQ67164.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300437984|gb|ADK17750.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus casei str. Zhang]
          Length = 470

 Score = 44.0 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 5   FVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +++ D E        ++    + + +RV    +   + ++F   P D ++  P +V ITG
Sbjct: 275 YIVIDTE---FVADRNQLDLTEISLLRVRHH-QVDGAFDIFTQLPEDHHVM-PFSVKITG 329

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS 87
           IT     + G         + Q   
Sbjct: 330 ITDDLLSQYGQPLPLAKAAVEQLLK 354


>gi|125531875|gb|EAY78440.1| hypothetical protein OsI_33531 [Oryza sativa Indica Group]
          Length = 482

 Score = 44.0 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 48/191 (25%), Gaps = 37/191 (19%)

Query: 5   FVIYDYETFGRDVALDR---PAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              +D ET        +     +F  + V  R+   + S      +P D  +    +V  
Sbjct: 29  IAFFDVETS-VPQRAGQGYALLEFGAILVCPRRLVVVGSYATL-VRPGDLGVVSAASVRC 86

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT            + +  ++                    +       R  +     
Sbjct: 87  NGITRDAVAAAPA-FRDVADAVYSVL-----------------HGLTRTRIREAFAEIGR 128

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                    D L ++                   A   K+  LA   G+    +H +  D
Sbjct: 129 PPPEPKGMIDTLPLL------------TQKFGRRAGDMKMASLANYFGLGR-QSHRSLDD 175

Query: 181 VYATLALVWLI 191
           V   L ++   
Sbjct: 176 VRMNLEVLKYC 186


>gi|322801322|gb|EFZ22009.1| hypothetical protein SINV_80878 [Solenopsis invicta]
          Length = 198

 Score = 44.0 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 32/125 (25%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
           NH V  D E  G +V      + A    D   E            +D  L          
Sbjct: 22  NHIVWLDMEMTGLEVETCHILEVACFVTDEHLELASDYLNIVIYQSDKVLQNMSDWCKLQ 81

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
              +    +        AE   +  +F        TC +  N++  D  + R        
Sbjct: 82  HKKSGLIDECRLSKTTLAEAQDKTTRFLENHVPRGTCPLAGNSVYMDRMFLRKYMPLVDN 141

Query: 116 DSYRW 120
             +  
Sbjct: 142 YLHYR 146


>gi|239814490|ref|YP_002943400.1| oligoribonuclease [Variovorax paradoxus S110]
 gi|239801067|gb|ACS18134.1| Exonuclease RNase T and DNA polymerase III [Variovorax paradoxus
           S110]
          Length = 198

 Score = 44.0 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 25/134 (18%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
            + V  D E  G D   +R  + A V                 +     L   ++  +  
Sbjct: 21  QNLVWLDCEMSGLDPEKERLLEIAVVVTGPDLTP---------RIDGPVLVIHQSDAVLD 71

Query: 61  ---------TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYS 106
                     G +    K     + EA   +++ +F +     +   +  N I  D  + 
Sbjct: 72  AMDAWNKGTHGRSGLIDKVKASTLDEAAAEQQLLEFVARYVPRSGSPMCGNTIGQDRRFL 131

Query: 107 RNIFYRNFYDSYRW 120
                +     +  
Sbjct: 132 VKFMPKLEAYFHYR 145


>gi|238918361|ref|YP_002931875.1| oligoribonuclease [Edwardsiella ictaluri 93-146]
 gi|238867929|gb|ACR67640.1| oligoribonuclease [Edwardsiella ictaluri 93-146]
          Length = 167

 Score = 44.0 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIES 39
           G D   DR  + A +  D     +  
Sbjct: 2  TGLDPQRDRIIEIATLVTDADLNVLAE 28


>gi|191637314|ref|YP_001986480.1| DNA polymerase III, alpha subunit (Gram-positive type)
           [Lactobacillus casei BL23]
 gi|190711616|emb|CAQ65622.1| DNA polymerase III, alpha subunit (Gram-positive type)
           [Lactobacillus casei BL23]
 gi|327381355|gb|AEA52831.1| DNA polymerase III PolC-type [Lactobacillus casei LC2W]
 gi|327384519|gb|AEA55993.1| DNA polymerase III PolC-type [Lactobacillus casei BD-II]
          Length = 478

 Score = 44.0 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 5   FVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +++ D E        ++    + + +RV    +   + ++F   P D ++  P +V ITG
Sbjct: 275 YIVIDTE---FVADRNQLDLTEISLLRVRHH-QVDGAFDIFTQLPEDHHVM-PFSVKITG 329

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS 87
           IT     + G         + Q   
Sbjct: 330 ITDDLLSQYGQPLPLAKAAVEQLLK 354


>gi|195116613|ref|XP_002002848.1| GI17603 [Drosophila mojavensis]
 gi|193913423|gb|EDW12290.1| GI17603 [Drosophila mojavensis]
          Length = 348

 Score = 44.0 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 27/133 (20%)

Query: 4   HFVIYDYETFGR-DVALDR--PAQF------AGVRVD----RQWEKIEST--EVFFCKPA 48
            F + D ET    +   +R    +       A + ++    R     +          P 
Sbjct: 19  TFAVLDLETSNLPEHRNNRVSITELCIYAFDAAILLNNTRSRDSNPADEPVHNELPSAPR 78

Query: 49  ----------DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGY 96
                        L  PEA  ITG++     R+  +       I +F        C++ +
Sbjct: 79  VMHKLNLLFQPSMLVLPEAEIITGLSNYLLERESKLNENAGELIKRFVEHLPPPVCLVAH 138

Query: 97  NNIRFDDYYSRNI 109
           N   FD    +  
Sbjct: 139 NGWPFDFPIIKQA 151


>gi|227533220|ref|ZP_03963269.1| DNA polymerase III, alpha subunit [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227189157|gb|EEI69224.1| DNA polymerase III, alpha subunit [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 470

 Score = 44.0 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 5   FVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +++ D E        ++    + + +RV    +   + ++F   P D ++  P +V ITG
Sbjct: 275 YIVIDTE---FVADRNQLDLTEISLLRVRHH-QVDGAFDIFTQLPEDHHVM-PFSVKITG 329

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFS 87
           IT     + G         + Q   
Sbjct: 330 ITDDLLSQYGQPLPLAKAAVEQLLK 354


>gi|309800379|ref|ZP_07694545.1| DNA polymerase III subunit epsilon [Streptococcus infantis
          SK1302]
 gi|308116010|gb|EFO53520.1| DNA polymerase III subunit epsilon [Streptococcus infantis
          SK1302]
          Length = 100

 Score = 44.0 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 5  FVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
          ++ +D E    +   D+    Q + VR  +  E++ + + +      D         +TG
Sbjct: 7  YISFDLE---FNKHQDKTHLIQVSAVRF-KDGEEVGAFDSY---VHTDVPLKSFINGLTG 59

Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV 88
          IT +      +VE E  +    F   
Sbjct: 60 ITSETLKDAPMVE-EVLKNFQDFVGE 84


>gi|156379361|ref|XP_001631426.1| predicted protein [Nematostella vectensis]
 gi|156218466|gb|EDO39363.1| predicted protein [Nematostella vectensis]
          Length = 171

 Score = 44.0 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 7/115 (6%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFITGIT--PQKA 68
            G D+      + A +  D   + I           DD L           G +      
Sbjct: 2   TGLDIDTCHIIEMACLVTDENLKIIAEGPNLVIHQPDDVLDAMGEWCTRQHGESGLTAAV 61

Query: 69  LRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
               +   +    +  F S    P +C +  N++  D  +      +     +  
Sbjct: 62  KASDISLQKAEDIMVGFVSQHVTPGSCPLAGNSVHADKRFLDKYMPKFMEQLHYR 116


>gi|159463698|ref|XP_001690079.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158284067|gb|EDP09817.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 91

 Score = 44.0 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 21 RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
             + + V +D    E     +  + +P +  L DP  V +TGI   +         E  
Sbjct: 1  EIIELSCVLLDAHSLEVRGEFQA-YVRPTEHPLLDPFCVELTGIEQAQVDTA-APLGEVL 58

Query: 80 RRIHQFFSVPNTCII 94
           R+  +         
Sbjct: 59 ERLDGWLRGRGALPA 73


>gi|156550374|ref|XP_001599410.1| PREDICTED: similar to three prime repair exonuclease 1, putative
           [Nasonia vitripennis]
          Length = 325

 Score = 44.0 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 19/129 (14%)

Query: 3   NHFVIYDYETFGRDVALD--RPAQFAGVRVDRQW------------EKIESTEVFFCKPA 48
           + FV +D ET          R  + + V  DR                +    +  C   
Sbjct: 13  DTFVFFDLETSDLIKGHRMPRITELSMVATDRNSLKNDMRDKLALPRIMHKLTIPIC--- 69

Query: 49  DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYS 106
            +     EA F + +           + +    I  F +      C + +N  RFD    
Sbjct: 70  PNAPIHQEASFASNLWNDSLEHFKPFDKDTYNMIMLFINRLPGVICFVAHNGNRFDYPVF 129

Query: 107 RNIFYRNFY 115
            +   +   
Sbjct: 130 LSEIDKLQM 138


>gi|139439051|ref|ZP_01772503.1| Hypothetical protein COLAER_01509 [Collinsella aerofaciens ATCC
           25986]
 gi|133775398|gb|EBA39218.1| Hypothetical protein COLAER_01509 [Collinsella aerofaciens ATCC
           25986]
          Length = 322

 Score = 44.0 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 46/193 (23%), Gaps = 28/193 (14%)

Query: 8   YDYETFGRDVALDRPAQFA---------GVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            D ET GR                     V  D +       +++     +D        
Sbjct: 136 IDIETTGRAPERGYIINVGWEIMELTSDAVPHDAEAHYCGLPDIYR---GEDVPLS---- 188

Query: 59  FITGITPQKALRDGVV--EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            I  IT              E  +++ +         + +N    D       +++   D
Sbjct: 189 NIHHITWDDIDGKKPFRENKELQKQLLKLMKKYP--YMAHNAAFED------SWFKIHLD 240

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
            Y  +   G  +  ++D  +   +   D    P     A              +    H 
Sbjct: 241 GYAEARRAG--KIIVIDSRQICRSLDADVRSLPRESAPAALENWARRRGTLAADANEQHL 298

Query: 177 AKADVYATLALVW 189
              D    L  V 
Sbjct: 299 GLDDTDLMLRTVQ 311


>gi|83643695|ref|YP_432130.1| inhibitor of the KinA pathway to sporulation, exonuclease [Hahella
           chejuensis KCTC 2396]
 gi|83631738|gb|ABC27705.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease
           [Hahella chejuensis KCTC 2396]
          Length = 190

 Score = 44.0 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 36/141 (25%), Gaps = 8/141 (5%)

Query: 5   FVIYDYETF----GRDVALD-RPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAV 58
           ++I D E      G     +    +   V VD      ++  + F  +P           
Sbjct: 10  YLIIDLEATCCDQGSVPRREMETIEIGAVMVDAMSLAVVDELQTFI-RPVRHPQLTDFCR 68

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +T I   +         E    +  +       +           + ++  +      +
Sbjct: 69  ELTTIKQTQVDSAP-TYPEAIESLQGWMRHYPNYLFCSWGDYDKGQFEQDCQFHRIAYPF 127

Query: 119 RWSWDNGNSRWDLLDVMRAIY 139
                N   ++     ++  Y
Sbjct: 128 ASGHLNIKKQFSATQGLKKKY 148


>gi|307206938|gb|EFN84782.1| Probable oligoribonuclease [Harpegnathos saltator]
          Length = 180

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 29/116 (25%), Gaps = 9/116 (7%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-----PEAVFITGITPQK 67
            G ++  D   + A V  D   + I           D  L +      +   I G+  + 
Sbjct: 12  TGLNIEKDHILEIACVVTDEALKIISEELNIVIHQPDTILNNMHQWCMKNHKINGLINES 71

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
                +   E    +  F         C +  N +  D  +            +  
Sbjct: 72  -RSSKISLKEAETTVLNFLKKYVPKRKCPLAGNTVYMDRLFLYKYMPSVNEYLHYR 126


>gi|302692530|ref|XP_003035944.1| hypothetical protein SCHCODRAFT_50758 [Schizophyllum commune H4-8]
 gi|300109640|gb|EFJ01042.1| hypothetical protein SCHCODRAFT_50758 [Schizophyllum commune H4-8]
          Length = 369

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 20/106 (18%)

Query: 3   NHFVIYDYE------TFGRDVALDRPAQF--AGVR--------VDRQWEKIESTEVFFCK 46
           + F++ D E      T           +F    +R           + E +++   F  +
Sbjct: 116 DAFLVVDVEGTCMQGTTFSYPN--EIIEFPVCLMRWRDKADDGTASELEVVDTFHSF-VR 172

Query: 47  PADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC 92
           P    +       +TGIT  +        A+  R  + F       
Sbjct: 173 PTWRPVLSQFCTDLTGITQSQVDAAP-PFADVLRSFYAFMIRHGLI 217


>gi|300775119|ref|ZP_07084981.1| exonuclease [Chryseobacterium gleum ATCC 35910]
 gi|300505859|gb|EFK36995.1| exonuclease [Chryseobacterium gleum ATCC 35910]
          Length = 183

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 6/121 (4%)

Query: 2   TNHFVIYDYETF---GRDVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           T + +I D E      R          +     ++ +  KI  +E    KP    +  P 
Sbjct: 4   TENILIVDLEATCWENRPPRGQESEIIEIGVCIMNAKTGKISKSEGILIKPQHSKV-SPF 62

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
              +T IT      +G++  +    +   +         Y N   +   ++   +   Y 
Sbjct: 63  CTELTTITQSMLDHEGIMLDDAFDILRAEYDSEELTWASYGNYDLNMLQNQARRFYTDYP 122

Query: 117 S 117
            
Sbjct: 123 M 123


>gi|159185984|ref|NP_356655.2| hypothetical protein Atu3986 [Agrobacterium tumefaciens str. C58]
 gi|159141118|gb|AAK89440.2| hypothetical protein Atu3986 [Agrobacterium tumefaciens str. C58]
          Length = 205

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 52/177 (29%), Gaps = 25/177 (14%)

Query: 22  PAQFAGVRV--DRQWEKIESTEVFFCKPADD---YLPDPEAVFITGITPQKALRDGVVEA 76
            AQ   V++  +  +  +E+ +V           Y  DP    +TGIT +    +GV   
Sbjct: 32  IAQIGAVKLGLEGGFPLLETYKVLISPVDRHGRRYAIDPFFTRLTGITEENIEAEGVPLQ 91

Query: 77  EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136
           +       F         G       +  + + +             +   R  L   M 
Sbjct: 92  DALSSFDSFSEGAQCWSWG---KDELNMMAISTYVAGIQPPMPACRFDNAVRLLLAAGMP 148

Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKADVYATLALVWLI 191
                  D  + PS            LA   G+ H  +  HDA  D  +    +  +
Sbjct: 149 V-----EDLAKTPSN----------SLADYYGVAHPPLQGHDALGDALSVSYALQHL 190


>gi|321272267|gb|ADW80152.1| leucine-rich repeat family protein [Wolbachia endosymbiont wVitA of
           Nasonia vitripennis phage WOVitA1]
 gi|321272324|gb|ADW80206.1| leucine-rich repeat family protein [Wolbachia endosymbiont wVitB of
           Nasonia vitripennis phage WOVitB]
          Length = 258

 Score = 43.7 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 1/24 (4%)

Query: 6   VIYDYETFGRDVAL-DRPAQFAGV 28
           ++ D ET G  V    R  +   V
Sbjct: 211 IVLDTETTGLSVKFGHRIIEIGCV 234


>gi|195398209|ref|XP_002057715.1| GJ17948 [Drosophila virilis]
 gi|194141369|gb|EDW57788.1| GJ17948 [Drosophila virilis]
          Length = 344

 Score = 43.7 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 39/148 (26%), Gaps = 30/148 (20%)

Query: 4   HFVIYDYETFGRDVALD---RPAQFAGVRVD----RQWEKIES--------TEVFFCKPA 48
            F + D ET       +      +      D    +   + E                P 
Sbjct: 20  TFAVLDLETSNLPAFNNNRVSITELCIYAFDPAVLKDNVETEEATPLDELTPASPNALPP 79

Query: 49  DDYL-------------PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCI 93
              +               P A  ITG+      R+  ++    + I +F     P  C+
Sbjct: 80  PPRVLHKLNLLFQPSMTVHPGAERITGLNNYILERESKLDENAGQIILRFLEHLRPPVCL 139

Query: 94  IGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           I +N   FD    +    +   +    +
Sbjct: 140 IAHNGWAFDFPIIKQALDKLNINLPAST 167


>gi|166032316|ref|ZP_02235145.1| hypothetical protein DORFOR_02019 [Dorea formicigenerans ATCC
           27755]
 gi|166028039|gb|EDR46796.1| hypothetical protein DORFOR_02019 [Dorea formicigenerans ATCC
           27755]
          Length = 218

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 28/191 (14%)

Query: 4   HFVIYDYET--------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           ++++ D E           R    +   Q   V +D ++++I +   F     +  + D 
Sbjct: 2   NYLVIDLEMCKVPRDYRSKRYKYANETIQIGAVLLDEEFKRIGTLSQFVH--PEHGVIDY 59

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRN 113
               +TGI   +            + +    +        +   +          I  +N
Sbjct: 60  FIENLTGIKNGQVKHTPR----LQKALLHMLNWIGDREYKVYAWSGSDRAQILHEIKAKN 115

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
             D    S+   +   D  D+    Y  S                  + L  A+      
Sbjct: 116 IVDEKIASFMEESRWVDYQDIFMKRYEMSRKMSL------------EEALGRADIDPEGR 163

Query: 174 AHDAKADVYAT 184
            HD   D   T
Sbjct: 164 FHDGLNDAVNT 174


>gi|322805639|emb|CBZ03204.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog
           [Clostridium botulinum H04402 065]
          Length = 322

 Score = 43.7 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 21/133 (15%)

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           ++  + G + Q    +G  +    +   +F       +I  +N+ FD     +   R   
Sbjct: 9   DSYLVHGFSDQFLKENGENKKVVLKDFLEFIKD---TVIVGHNVTFDTSILNSELERLSL 65

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
           +   +      + +D LD+ R  Y                T+ KL+ L+     E  ++H
Sbjct: 66  EKASFK-----TYYDTLDIARRFY-------------PSLTNHKLETLSKLFNTETKSSH 107

Query: 176 DAKADVYATLALV 188
           DA  D+ AT  ++
Sbjct: 108 DAMDDILATKDVL 120


>gi|91787582|ref|YP_548534.1| oligoribonuclease [Polaromonas sp. JS666]
 gi|91696807|gb|ABE43636.1| Exonuclease [Polaromonas sp. JS666]
          Length = 187

 Score = 43.7 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 19/119 (15%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPD 54
            + V  D E  G D   +R  + A V    Q           I  ++    +  +     
Sbjct: 13  QNLVWLDCEMTGLDPEKERLIEIAVVVTGPQLTPRIEGPVLAIHQSDELLDQMDNWNK-- 70

Query: 55  PEAVFITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRN 108
                  G +    K     V E     ++  F +         +  N+I  D  +   
Sbjct: 71  ----GTHGRSGLIDKVKASTVTEEAAEAQLLAFLAQYVPKGGSPLCGNSISQDRRFLVK 125


>gi|188589009|ref|YP_001921284.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
 gi|188499290|gb|ACD52426.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
          Length = 974

 Score = 43.7 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 39/129 (30%), Gaps = 14/129 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +  D ET G D       +   V++ +      +T     +P  +       +   G
Sbjct: 9   DNVIYLDIETTGLDENNCEIIEIGAVKI-KNLSV--TTYEVLIRPKGNVPVSIYKLCQ-G 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTC---------IIGYNNIRFDDYYSRNIFYRN 113
           +  +  +    +E +  + +  F                 + Y+     +    ++    
Sbjct: 65  LKEEDLMNSRHLE-DIKKELLVFLEDLPLICHNGGFERKFLSYHIPEIKNEIFDSMELSA 123

Query: 114 FYDSYRWSW 122
             + +R  +
Sbjct: 124 ILEPWRKEY 132


>gi|293374135|ref|ZP_06620469.1| exonuclease [Turicibacter sanguinis PC909]
 gi|325837434|ref|ZP_08166416.1| exonuclease [Turicibacter sp. HGF1]
 gi|292647238|gb|EFF65214.1| exonuclease [Turicibacter sanguinis PC909]
 gi|325490966|gb|EGC93264.1| exonuclease [Turicibacter sp. HGF1]
          Length = 365

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 10/125 (8%)

Query: 5   FVIYDYE--TFGRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           +   D E    G +           QF  +  D +   +E     + KP        +  
Sbjct: 168 YAFLDLEFSMSGPEYRGTKFIPEIIQFGLIIADAEGNLVEKFSA-YVKPTIFPQISGKTQ 226

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
               IT       G+   EF   I +  +  N   I +     D +   N +  N     
Sbjct: 227 EFLKITDASVA-YGITYLEFYGYIKEVIARYNPLFIVWGV--SDGFILENSYVINGVKPL 283

Query: 119 RWSWD 123
             +  
Sbjct: 284 FETNQ 288


>gi|167949792|ref|ZP_02536866.1| exonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 79

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 134 VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
           ++R  +A  P+GI+WPS   G  SF+L+ L  ANGI H  AHDA +DVYAT+
Sbjct: 1   MVRLTHALRPEGIEWPSDAAGRPSFRLELLTAANGIAHQAAHDALSDVYATI 52


>gi|307543934|ref|YP_003896413.1| hypothetical protein HELO_1345 [Halomonas elongata DSM 2581]
 gi|307215958|emb|CBV41228.1| hypothetical protein HELO_1345 [Halomonas elongata DSM 2581]
          Length = 162

 Score = 43.7 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 20/135 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITGITPQ 66
            D E  G       P +    R D       S   F  +P  +    DP+A  + GI+  
Sbjct: 7   LDIEASGFG-RGSYPIEIGLARAD------GSVCAFLIQPLDEWTHWDPKAELLHGISRN 59

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCI------------IGYNNIRFDDYYSRNIFYRNF 114
           +  R+G    + +  ++   S                  + +++      +      R  
Sbjct: 60  RLQREGYPVRQVACWLNDELSDIGIAYSDSWGYDNTWLSLLFHHAGMLPAFRLEALRRLL 119

Query: 115 YDSYRWSWDNGNSRW 129
            ++    W +     
Sbjct: 120 SEAQLERWSDTKETI 134


>gi|298489770|ref|YP_003719947.1| exonuclease RNase T and DNA polymerase III ['Nostoc azollae' 0708]
 gi|298231688|gb|ADI62824.1| Exonuclease RNase T and DNA polymerase III ['Nostoc azollae' 0708]
          Length = 178

 Score = 43.7 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 40/133 (30%), Gaps = 1/133 (0%)

Query: 23  AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82
            +   V ++RQ  +I+S    F KP  + +       +T I+ ++         E   ++
Sbjct: 23  IEIGAVILNRQTWEIDSEFQQFIKPVRNPILTDFWRNLTTISQKQVDTAPQ-FPEVMPKL 81

Query: 83  HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
            ++ S     I           + +   + N    +     N   ++     +   +  +
Sbjct: 82  AEWMSSFPNDIFCPGGNYDKTQFLQYCKFHNIPYPFGPEHRNIKKQFSEYLGVYNKFGMA 141

Query: 143 PDGIQWPSRDDGA 155
                      G 
Sbjct: 142 QALQHLGMELKGT 154


>gi|303284587|ref|XP_003061584.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456914|gb|EEH54214.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 234

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 53/193 (27%), Gaps = 31/193 (16%)

Query: 8   YDYE--TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            D E    G        AQ A   VD+    +      + KP +  +       +TG++ 
Sbjct: 20  IDVECIASGTQHNAREVAQIA--LVDQHERCL---LNVYVKPPEGVVVASYLTPLTGLSA 74

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +     GV  AE    +      P   ++   NI  D  +                  + 
Sbjct: 75  ELLDAHGVSLAEAIAAVRNAL--PPHAVLVGQNIAKDVEWLG-----------LREGTDF 121

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVNAHDAKADVYAT 184
               DL  V R           W  +    + F    L     G +    H+A  D   +
Sbjct: 122 AGMVDLAGVWRV----------WNEKYKSWSVFGQDHLVKTLLGSDVAEQHNAAIDALKS 171

Query: 185 LALVWLIREKKPK 197
           + L       +  
Sbjct: 172 VRLFNYYAFLQSP 184


>gi|256113257|ref|ZP_05454125.1| Exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|265994669|ref|ZP_06107226.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262765782|gb|EEZ11571.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 203

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 53/207 (25%), Gaps = 34/207 (16%)

Query: 2   TNHFVIYDYE---TFGRDVAL-------DRPA-QFAGVRVDRQWEKIESTEVFFCKPADD 50
               +I+D E   T G            D    Q   V++  +  ++   E F       
Sbjct: 1   MKTAIIFDCEFLCTKGSQSRFWCAAIDPDPVIAQIGAVKIGLE-NELPILETFKAYVTPH 59

Query: 51  ------YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
                 Y   P    +TGIT ++  RDG         +  F          +      + 
Sbjct: 60  DRYGARYAIAPYFTDLTGITEEQISRDGKPLKTALNDLDSF--SDGATFWSW-GKDELNM 116

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
            + + +             +   +  L+  M                     S KL D  
Sbjct: 117 IAISCYVEGIAPPIPAPRFDNAVKLLLVAGMPVE------------DLARTPSNKLADY- 163

Query: 165 LANGIEHVNAHDAKADVYATLALVWLI 191
                  +  HDA  D  +    +  +
Sbjct: 164 YGLEHPELQGHDALDDARSIGYTLQYL 190


>gi|327279889|ref|XP_003224688.1| PREDICTED: 3'-5' exoribonuclease 1-like [Anolis carolinensis]
          Length = 343

 Score = 43.7 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             + D+E     G  +       +F  V ++ +  +IE T   + KP  +       + +
Sbjct: 125 ICVIDFEATCEEGNQLEFTHEIIEFPIVLINTRTLEIEDTFQQYVKPVINPQLSDFCINL 184

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGI+ ++  +      +  + +  +              +   +         +    R 
Sbjct: 185 TGISQERVDKADE-FPKVLQSVIDWMKQKELGSRYSYAILTDGSWDMSKFLNIQCRVNRL 243

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y ++   W N    + +   V R     S    +     DG     L D
Sbjct: 244 RYPAFAKKWINIRKSYGNFYKVPRNQTKLSTMLEKLGMDYDGRPHSGLDD 293


>gi|150864428|ref|XP_001383238.2| Asparagine-rich protein (ARP protein) [Scheffersomyces stipitis CBS
           6054]
 gi|149385684|gb|ABN65209.2| Asparagine-rich protein (ARP protein) [Scheffersomyces stipitis CBS
           6054]
          Length = 460

 Score = 43.7 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 43/172 (25%), Gaps = 17/172 (9%)

Query: 1   MTNHFVIY------DYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
           M++ +++       D  T           +FA   VD    E ++   V           
Sbjct: 1   MSDVYIVVHIATTCDESTTYVTKDSSELIEFAWSVVDATTLENLDKESVLVRPVN--TPI 58

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
            P    +  IT +     G    +   +   +       II  N       +  +     
Sbjct: 59  TPYCSQLHRITWEHVRNAG-SFKDAIVKFDTYIQDN---IISKNKEFSLVTFDMS----K 110

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
                     +             ++  S +  +W      A S+    L+ 
Sbjct: 111 LRVQLPREARDKAVVLPPYLQHPRVFDLSTEYAKWQITHPEALSYTASSLSN 162


>gi|109899992|ref|YP_663247.1| hypothetical protein Patl_3691 [Pseudoalteromonas atlantica T6c]
 gi|109702273|gb|ABG42193.1| conserved hypothetical protein [Pseudoalteromonas atlantica T6c]
          Length = 165

 Score = 43.7 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 6/82 (7%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
          +I D E  G   +   P +   V +D                 D      EA  + GI+ 
Sbjct: 9  IILDIEASGFGAS-SYPIEVG-VALDPDT----RFCRLIRPQNDWQHWSEEAQGLHGISR 62

Query: 66 QKALRDGVVEAEFSRRIHQFFS 87
             L  G    +    ++Q  +
Sbjct: 63 SMLLEKGAPVHQVCIELNQLLN 84


>gi|163759674|ref|ZP_02166759.1| hypothetical protein HPDFL43_09982 [Hoeflea phototrophica DFL-43]
 gi|162283271|gb|EDQ33557.1| hypothetical protein HPDFL43_09982 [Hoeflea phototrophica DFL-43]
          Length = 204

 Score = 43.7 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 16/102 (15%)

Query: 2   TNHFVIYDYE--TFGRDVAL--------DRPA-QFAGVRV--DRQWEKIESTEVFFCKPA 48
               +I+D E  T               D    Q   VR+  +  +   ES  V      
Sbjct: 1   MKSAIIFDCEFLTIEGSPQRFWCGPYDPDPVIAQIGAVRLGLEGDFPLTESFSVLVKPLD 60

Query: 49  DD---YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS 87
                Y  DP    +TGI       +G+   E      +F +
Sbjct: 61  RHGRPYPIDPFFTRLTGINEDAIKDNGLALEEALGAFDRFTN 102


>gi|78484942|ref|YP_390867.1| ribonuclease T [Thiomicrospira crunogena XCL-2]
 gi|78363228|gb|ABB41193.1| RNAse T [Thiomicrospira crunogena XCL-2]
          Length = 207

 Score = 43.7 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 10/128 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G D   +   + A V  +++       + T      P      D  A+   G
Sbjct: 17  VVVDVETAGFDPQTNALIEIAIVTLKMNSDGTIERDQTVQANVLPFKGSQLDKSALKFIG 76

Query: 63  ITP-----QKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           +       + A+ +     +    I Q       +  I+  +N  FD  + +    R   
Sbjct: 77  VEDPTHPFRMAVSEKDALEKCFAPIRQLLKETDCSRAILVGHNAFFDLSFVKAAADRCKV 136

Query: 116 DSYRWSWD 123
            S    + 
Sbjct: 137 KSPFHEFS 144


>gi|325280210|ref|YP_004252752.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324312019|gb|ADY32572.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 169

 Score = 43.7 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 9/121 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
              F   D+ET   +           V ++R     +          + Y        I 
Sbjct: 1   MEKFAAIDFET--ANWQQTSVCSVGIVVMNR-GVIEDRFYSLIHPAPNFY--SRRNTAIH 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           G++ +      +      R I           +  +N  FD+   + +F     D   +S
Sbjct: 56  GLSREDTEEA-LAFPTVWREIAPMIE---GIPLVAHNSMFDEGCLKAVFRLYEMDYPGYS 111

Query: 122 W 122
           +
Sbjct: 112 F 112


>gi|226314204|ref|YP_002774100.1| hypothetical protein BBR47_46190 [Brevibacillus brevis NBRC 100599]
 gi|226097154|dbj|BAH45596.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 239

 Score = 43.7 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 12/126 (9%), Positives = 33/126 (26%), Gaps = 9/126 (7%)

Query: 5   FVIYDYETFGRDVALD---RPAQFAGVRV--DRQWEKIESTEVFFCKPADDYLPDPEAVF 59
            +++D ET       D      +    +V   +   ++++ +  +  PA +         
Sbjct: 3   IIVFDLETT-LTYQRDKIPEIIEIGAAKVVPGKNGVEVDTFQ-RYTFPAIERRISERTRK 60

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
             G+  +      +          ++    +   +     + D         R   D   
Sbjct: 61  FIGLDKENMPTF-IPFRRAFAEFLKWIGNDSEYYLCTWG-QDDKRLMIEHCARFGLDFNW 118

Query: 120 WSWDNG 125
               N 
Sbjct: 119 MRNYND 124


>gi|312381274|gb|EFR27059.1| hypothetical protein AND_06458 [Anopheles darlingi]
          Length = 379

 Score = 43.7 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 11/117 (9%)

Query: 3   NHFVIYDYETFGR-DVALDR--PAQFAGV------RVDRQWEKIESTEVFFCKPADDYLP 53
             F   D ET G  +    R    + + V       ++   E                + 
Sbjct: 5   KSFAFLDLETTGLPEYEFSRTKITELSVVACSRQHLLESNSELPRVVHKLSLCFNPFRMI 64

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRN 108
             ++   TG+       +   +         F S      C++ +N  RFD    + 
Sbjct: 65  SHQSSQSTGLYNDLLQHESKFDGHAGELFKMFLSRLQKPICLVAHNGYRFDFILLKK 121


>gi|225718354|gb|ACO15023.1| Oligoribonuclease, mitochondrial precursor [Caligus clemensi]
          Length = 230

 Score = 43.3 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 15/116 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-----PDPEAVF 59
            V  D E  G D+  D   + A +  D    ++           D  L        E+  
Sbjct: 54  LVWIDCEMTGLDIEKDVLMEVAVIVTDSSLREVTPGINLIIHQPDSILNAMTEFPEESHA 113

Query: 60  ITGITPQ------KALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRN 108
           +TG+T                E +  R I Q  S    T ++  N++  D  + + 
Sbjct: 114 LTGLTEACRASQIDLRNA---EDQICRHIRQGLSGTTGTPLLAGNSVGHDLKFLQK 166


>gi|213621109|ref|ZP_03373892.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-2068]
          Length = 166

 Score = 43.3 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIES 39
           G D   DR  + A +  D     +  
Sbjct: 1  TGLDPERDRIIEIATLVTDASLNILAE 27


>gi|227505999|ref|ZP_03936048.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
 gi|227197281|gb|EEI77329.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
          Length = 526

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 9/98 (9%)

Query: 12  TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71
           T G   +  R      +  + Q E  +           D  P P    + G+TP++  R 
Sbjct: 94  TTGIHPSTARLVAIDALTFNAQGEVGQEFHAV---VNPDIDPGPR--HLHGLTPEEVAR- 147

Query: 72  GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           G   +   + + +     +   +  ++  F   +  + 
Sbjct: 148 GQAFSRLLKPLDRLI---DGRTLIVHDTPFTWGFIVSE 182


>gi|325963677|ref|YP_004241583.1| oligoribonuclease (3'->5' exoribonuclease) [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469764|gb|ADX73449.1| oligoribonuclease (3'->5' exoribonuclease) [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 195

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 19/109 (17%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP---------EAVFI--- 60
            G D+  D   + A +  D +   +        KP D  +            ++  +   
Sbjct: 2   TGLDIKNDALIEVAALVTDSELNILGDGVDVVIKPDDAAVAQMNDFVRDMHTKSGLLKEL 61

Query: 61  -TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
             G T  +A      EA     I ++   P    +G N++  D  +   
Sbjct: 62  PHGKTMAEA------EAAVMEYISKWVPDPRKAPLGGNSVGTDRVFLSR 104


>gi|320590733|gb|EFX03176.1| RNA-binding protein [Grosmannia clavigera kw1407]
          Length = 616

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 53/214 (24%), Gaps = 29/214 (13%)

Query: 3   NHFVIYDYETF----GRDVALD--RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDP 55
           + +V+    T     G  V  D     +   + +D +  E++    V            P
Sbjct: 12  DRYVVIHVATTCDEHGVYVTKDSAEVIEIGWILLDAKNLEELYRESVLVKPIN--TPITP 69

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQF----FSVPNTCIIGYNNIRFDDYYSRNIFY 111
               +T +T +     G    +   R   F     +  +   +      +D         
Sbjct: 70  LCTSLTTLTWEHVRNAG-TFRDAINRFDAFASEHLTSQSLDFVFVTLDAWDLRVQLPREA 128

Query: 112 RNF---YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
           R+       Y       + R            +       P       S  L ++  A  
Sbjct: 129 RDKAVVLPPYLQHSRTFDLR----------QEYQRWQQHHPESLPFGPS-SLSNICAALE 177

Query: 169 I-EHVNAHDAKADVYATLALVWLIREKKPKLFEY 201
                +   A  +      ++  +  K     E+
Sbjct: 178 ALAPASPRRAMEEAVTLARVLRGLIRKSQPAHEH 211


>gi|46190895|ref|ZP_00206604.1| COG1949: Oligoribonuclease (3'->5' exoribonuclease)
           [Bifidobacterium longum DJO10A]
 gi|189440035|ref|YP_001955116.1| Oligoribonuclease [Bifidobacterium longum DJO10A]
 gi|189428470|gb|ACD98618.1| Oligoribonuclease [Bifidobacterium longum DJO10A]
          Length = 214

 Score = 43.3 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 45/182 (24%), Gaps = 15/182 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            +  D ET G D       +      D + E    +      P +         +     
Sbjct: 26  LLWIDTETTGLDPNQCELLEVGMQVTDLKAETRGGSLHLIVHPDNVRN------WANH-- 77

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           P+          E         +       GY+           +  +    +   +  N
Sbjct: 78  PEMLKA-----YEMHLANGLMLACAEAPKTGYDYKHTALNIHEFLNDQLSQYTLHPAGTN 132

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
            +     LDV  + +   P       R    TSF+L D A   G      H     V   
Sbjct: 133 VDFDLRQLDVHLSRHLEHPITQGLHHRKLDLTSFRLADQA--IGGNPYQNHAGTHRVQDC 190

Query: 185 LA 186
           + 
Sbjct: 191 IR 192


>gi|332519635|ref|ZP_08396099.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
 gi|332044194|gb|EGI80388.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
          Length = 398

 Score = 43.3 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 24/187 (12%)

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                     E ++RI +       CII  +N +FD+   R  F R  ++  R +     
Sbjct: 1   MLRNAPK-FYEVAKRIVEITE---GCIIVAHNAQFDNRILRTEFKRLGFEFERET----- 51

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                L  +       PD            S+ L  L  + GI   + H A  D  AT+ 
Sbjct: 52  -----LCTVELSKTLIPDL----------PSYSLGKLVRSLGIPVTDRHRASGDALATVK 96

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246
           L  L+  K  +        R + +L+    + ++   +          +    I  +   
Sbjct: 97  LFKLLLSKDIEKTIIQTFLRKQPKLQLEPKLVDIIAQMPSITGVYYIHNKDGDIIYIGKS 156

Query: 247 PRYKDSV 253
              K  +
Sbjct: 157 KNIKRRI 163


>gi|195999854|ref|XP_002109795.1| hypothetical protein TRIADDRAFT_20827 [Trichoplax adhaerens]
 gi|190587919|gb|EDV27961.1| hypothetical protein TRIADDRAFT_20827 [Trichoplax adhaerens]
          Length = 229

 Score = 43.3 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 52/207 (25%), Gaps = 29/207 (14%)

Query: 6   VIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +I D+E                +F  V ++   ++IE+    + +P  +         +T
Sbjct: 7   IIIDFEATCWKDNSSRYSSEIIEFPAVLLNVLTQQIEAVFHQYVQPTINPKLSEFCKTLT 66

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           GIT ++   DG+  A       ++                +            + +Y   
Sbjct: 67  GITQKQV-DDGIPLATCLVSFRKWLDEI--------IKNKNIRLFNKNCRDAGHKNYYNC 117

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA------- 174
                S WD+   +   Y      I+ P+        +                      
Sbjct: 118 IFVTWSDWDIG--VCLYYECKKKQIKLPTEFYQWIDLRALYKRFYGKKPTGLNGSMESVG 175

Query: 175 -------HDAKADVYATLALVWLIREK 194
                  H    D   T  L   +   
Sbjct: 176 LKFIGREHSGLDDSKNTARLCSKMVHD 202


>gi|297568688|ref|YP_003690032.1| Exonuclease RNase T and DNA polymerase III [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924603|gb|ADH85413.1| Exonuclease RNase T and DNA polymerase III [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 167

 Score = 43.3 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 28/149 (18%)

Query: 39  STEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNN 98
                   P++ ++       I G+T +          +   +I +         +  +N
Sbjct: 35  RFYELIRPPSNWFVF----THIHGLTWRDVRNAPA-FGDIWPQIAKEMGQVE--FLAAHN 87

Query: 99  IRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF 158
             FD          N        +         + + R  +   P               
Sbjct: 88  ASFDQGVMLACCAENALPPPAPPF------ICTVRLSRKQWNIHPT-------------- 127

Query: 159 KLQDLALANGIEHVNAHDAKADVYATLAL 187
           KL D+     I   + H A +D  A   +
Sbjct: 128 KLPDVCRQLQIPLHHHHAA-SDAEACAQI 155


>gi|268571701|ref|XP_002648789.1| Hypothetical protein CBG11812 [Caenorhabditis briggsae]
 gi|187029998|emb|CAP30907.1| hypothetical protein CBG_11812 [Caenorhabditis briggsae AF16]
          Length = 302

 Score = 43.3 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 15/195 (7%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEA 57
           +  +I D+ET   +   D      Q + V ++   + I    VF    KP  +       
Sbjct: 10  DDLLILDFETTCEEGVFDHPVEIIQMSVVVLNITDKLIREDVVFNKLVKPVVNQKLSQYC 69

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + +TGI  Q A+    + +   ++  ++           +N+    +       ++ +  
Sbjct: 70  IELTGI-QQDAVDKADIFSVVYQQFLEWLKK--------HNLDERKFAFACDGRQDMWRL 120

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHD 176
            ++ +      +  +             I        A    L+ ++    I+   +AH+
Sbjct: 121 AQYQFLLIKENFPAIFRQWININRIFQDIAKEKYLSIAGRSNLEKMSNFFEIKFEGHAHN 180

Query: 177 AKADVYATLALVWLI 191
           A  DV     +   I
Sbjct: 181 AMDDVKFLAQVAKKI 195


>gi|332970228|gb|EGK09221.1| exonuclease [Psychrobacter sp. 1501(2011)]
          Length = 231

 Score = 43.3 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 53/224 (23%), Gaps = 45/224 (20%)

Query: 2   TNHFVIYDYETF-GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
               ++ D ET  GRD    RP Q A +       +  +   +                I
Sbjct: 7   MPTALVIDTETDQGRDP---RPIQVATI-------EASTGHEWMSYFNSGRPISAIVTKI 56

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            GIT       G+             +   +  +  +N+RFD                  
Sbjct: 57  HGITDADV--AGLASF-------NLDNFQVSDYLIGHNVRFDWGVI-------------- 93

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
               G  +  L+  +R      P+  ++                         AHDA  D
Sbjct: 94  ----GRPKVKLICTVRLARVAFPEWHKYSQSKCIEQLLG----EEEAAEMTAAAHDALGD 145

Query: 181 VYATLALVWLI---REKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
                 L           P  F   +   N  +    +      
Sbjct: 146 ARMCYLLYKACCERLNFDPNDFATAHQISNNAKPIARMPFGKYK 189


>gi|322691727|ref|YP_004221297.1| oligoribonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456583|dbj|BAJ67205.1| oligoribonuclease [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 216

 Score = 43.3 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 61/208 (29%), Gaps = 31/208 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +  D E  G D+   D   + + V  D     ++    +  KP++          +  +
Sbjct: 17  LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEK--------AVNHM 68

Query: 64  TP---QKALRDGVV------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                Q   R G++            E + +  + +F S     ++  N I  D  +  +
Sbjct: 69  NDFVRQMHTRSGLINEWENGLSLAEAEQKVTEYVLRFTSEGVRPLLAGNTIGSDKKFLDH 128

Query: 109 IFYRNFYDSYRW-----SWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
                    +       ++     RW   + +                   D    ++  
Sbjct: 129 YMPNLMSHLHYRSVDVSTFKELARRWYPAVYENRPPKNGGHRALADIIESLDELRYYRKA 188

Query: 162 DLALANGIEHVNAHDAKADVYATLALVW 189
            +A A G +   +    AD+ AT  L  
Sbjct: 189 FMAPAPGPDDAASKAIAADIVATSILNK 216


>gi|184156861|ref|YP_001845200.1| oligoribonuclease [Acinetobacter baumannii ACICU]
 gi|183208455|gb|ACC55853.1| Oligoribonuclease (3'->5' exoribonuclease) [Acinetobacter baumannii
           ACICU]
          Length = 173

 Score = 43.3 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 7/115 (6%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITGIT--PQKA 68
            G D   D+  + A +  D     +    V      D  L   D       G +   ++ 
Sbjct: 2   TGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIHQPDRILNAMDEWNTRQHGQSGLIERV 61

Query: 69  LRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            R  +   +   +  +F           +  N+I  D  +   +        +  
Sbjct: 62  RRSKLTARDAELQTLEFLKKWVNPKVSPMCGNSICQDRRFLHRLMPELEQYFHYR 116


>gi|329947400|ref|ZP_08294604.1| oligoribonuclease [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328525150|gb|EGF52201.1| oligoribonuclease [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 203

 Score = 43.3 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
          ++  V  D E  G D++ D   + A V  D +   +        KP 
Sbjct: 4  SDPLVWIDCEMTGLDLSADALIEVAVVVTDYELAPLAEGIDVLIKPP 50


>gi|254490583|ref|ZP_05103769.1| hypothetical protein MDMS009_915 [Methylophaga thiooxidans DMS010]
 gi|224464327|gb|EEF80590.1| hypothetical protein MDMS009_915 [Methylophaga thiooxydans DMS010]
          Length = 200

 Score = 43.3 bits (100), Expect = 0.094,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 67/201 (33%), Gaps = 13/201 (6%)

Query: 2   TNHF-VIYDYETF--GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           T  F    D+E    G D     P + A    D     +ES  +     +     D  A 
Sbjct: 10  TETFPCFIDFEASSLGLDSY---PIEVALSLDDG---TVESYLIDPSTVSHWSDWDSFAE 63

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +  IT  +    G+   + ++ +++  +      + Y++++  D+      +     S 
Sbjct: 64  SLHKITQSELRASGLSPLDITQLMNERLAGK----VVYSDVQEYDWKWCQKLFEASGVSP 119

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
            +   +    ++    +    + +      P  D+  +S   Q  A A        H A 
Sbjct: 120 TFKISDAWMLFNHKLNVTHEPSLTQIMTASPHTDEKLSSILNQYSAQAWKDLDCARHRAA 179

Query: 179 ADVYATLALVWLIREKKPKLF 199
            DV   + +  LI + +   +
Sbjct: 180 CDVRHLIEMWKLITDTQSHNY 200


>gi|17548214|ref|NP_508415.1| Cell-death-Related Nuclease family member (crn-4) [Caenorhabditis
           elegans]
 gi|2496805|sp|Q10905|CRN4_CAEEL RecName: Full=Cell death-related nuclease 4; Flags: Precursor
 gi|1086852|gb|AAA82440.1| Hypothetical protein AH9.2 [Caenorhabditis elegans]
 gi|31747257|gb|AAP57300.1| cell death-related nuclease 4 [Caenorhabditis elegans]
          Length = 298

 Score = 43.3 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 73/289 (25%), Gaps = 18/289 (6%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEA 57
           +  +I D+ET       D      QFA V  D   +KI     F  + KP  +       
Sbjct: 9   DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNC 68

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYD 116
           V  TGI PQ+++           +  Q+                      R   Y+    
Sbjct: 69  VDFTGI-PQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLS 127

Query: 117 SYRWS-WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
           + +   +         +           +     +       + L  +          AH
Sbjct: 128 NIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTI--------GRAH 179

Query: 176 DAKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           DA  D      ++  +I          L       + + L+  +       +       R
Sbjct: 180 DAMDDCLNIATILQRMINMGAKVTVNELLTCCASWRRQPLVYNKEWRS-SFMDAGKIFER 238

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE 283
               ++  +       +    C               Q    L+ + ++
Sbjct: 239 VLPLVVTTIRAGDFRLEMYGVCRYCRKGMDVCGTSHQQTPHDLYKNEED 287


>gi|228969485|ref|ZP_04130297.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228790228|gb|EEM37998.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 206

 Score = 43.3 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 46/175 (26%), Gaps = 21/175 (12%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V++     + IE                     +TGIT +  +          
Sbjct: 18  EIVDIGAVKIKIGTMKIIEEFSEL---VKPSARLTRHTTKLTGITKEDLIGVEKSP---- 70

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           + + +F        I  +  + D  +  +    +  +      +N   R DL   +   Y
Sbjct: 71  QIVEKFIQFIGEDCIFVSWGKEDYRFLSHDCALHGVECTSIEKEN---RIDLQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
                        +   S +     L    E    H A AD   T  ++  +  +
Sbjct: 128 ---------EELFEHTPSLQFAVEQLGLTWE-GKQHRALADAENTANILLKVYSE 172


>gi|227872469|ref|ZP_03990809.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227841670|gb|EEJ51960.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 388

 Score = 43.3 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 67/237 (28%), Gaps = 50/237 (21%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               + +D ET G      +      +       +I   ++F    +++           
Sbjct: 23  KEEILFFDIETTGLSPKSAQIYSIGLLLFKASEMEI--VQLFANSLSEEI---------- 70

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
                          E  +   ++     T  I +N   FD  +    + +    S    
Sbjct: 71  ---------------EVLQEFQEY-CKAKTQFISFNGKAFDTPFLEKSYSQYGLKSPIT- 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
              G  + DL  ++++   F               S+KL++     GI+         D+
Sbjct: 114 ---GLPQLDLFKMIQSRRKFY-----------QLPSYKLKECERFLGIQRE-------DI 152

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
           Y    L+++  E      E       ++    L+ + ++        +F    S   
Sbjct: 153 YTGGELIYVYLEYLEHPTEEAKSLLLQHNFEDLLYLPSLFSFFAYEELFQGKGSYCR 209


>gi|257453522|ref|ZP_05618812.1| putative exodeoxyribonuclease X [Enhydrobacter aerosaccus SK60]
 gi|257448980|gb|EEV23933.1| putative exodeoxyribonuclease X [Enhydrobacter aerosaccus SK60]
          Length = 236

 Score = 43.3 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 49/203 (24%), Gaps = 38/203 (18%)

Query: 2   TNHFVIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            + ++  D E  G  +      A    V        +++   F  +          +  I
Sbjct: 1   MSSYI-LDTEAHGLVEPHATEIAYIGVVFSPAGELILQTHNAFEQRFNPHKKITLGSQAI 59

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI             +F              +IG+N     D  +              
Sbjct: 60  TGIFDDDVADKP-PHTDF------QLPKDCEYLIGHNIDFDADVLTNANCD--------- 103

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-----AH 175
              +   R   L + R                    S  L  L      +        AH
Sbjct: 104 --LSNIKRICTLALAR-------------HFFPQLDSHSLGALLCFFEPQVAKKNIKFAH 148

Query: 176 DAKADVYATLALVWLIREKKPKL 198
            AK D++ T  ++  I  +    
Sbjct: 149 GAKYDIWFTFLVLKAICSQHRIT 171


>gi|239995299|ref|ZP_04715823.1| hypothetical protein AmacA2_12527 [Alteromonas macleodii ATCC
          27126]
          Length = 165

 Score = 43.3 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 23/81 (28%), Gaps = 6/81 (7%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           I D E  G   A   P +   VR D                      D +A  + GIT 
Sbjct: 8  TIIDIEASGFGAA-SYPIEIGIVRYDG-----AKWCKLLRPFDSWVHWDRKAESLHGITQ 61

Query: 66 QKALRDGVVEAEFSRRIHQFF 86
          Q     G    +    ++ F 
Sbjct: 62 QMLQTRGEEPRKVCVELNNFL 82


>gi|163788571|ref|ZP_02183016.1| DNA polymerase III, epsilon subunit [Flavobacteriales bacterium
           ALC-1]
 gi|159875808|gb|EDP69867.1| DNA polymerase III, epsilon subunit [Flavobacteriales bacterium
           ALC-1]
          Length = 398

 Score = 43.3 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 35/129 (27%), Gaps = 24/129 (18%)

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                     E ++RI +       CII  +N  FD    +  F R  +           
Sbjct: 1   MLRNAPK-FYEVAKRIVEITED---CIIVAHNSSFDYRILKTEFKRLGFPF--------- 47

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                                         S+ L  L  A GI   + H A  D  AT+ 
Sbjct: 48  -----------KRKTLCTVELSKQLIPDMESYSLGKLTRALGIPVSDRHRANGDAVATVK 96

Query: 187 LVWLIREKK 195
           L  ++  K 
Sbjct: 97  LFKMLLNKD 105


>gi|320534579|ref|ZP_08035028.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133200|gb|EFW25699.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 213

 Score = 42.9 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
          ++  V  D E  G D + D   + A +  D + + +        KP 
Sbjct: 14 SDPLVWIDCEMTGLDQSADALIEVAVIVTDYELKPLADGIDVLIKPP 60


>gi|289165197|ref|YP_003455335.1| excinuclease abc, subunit c [Legionella longbeachae NSW150]
 gi|288858370|emb|CBJ12238.1| putative excinuclease abc, subunit c [Legionella longbeachae
           NSW150]
          Length = 518

 Score = 42.9 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/192 (10%), Positives = 53/192 (27%), Gaps = 22/192 (11%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               +I D +T G   +     Q     V          E +  K   +     +   + 
Sbjct: 6   QKKILILDCQTTGMHPSTGSLLQIGWSIVAPSTLHEFEIEKWTLKLPKEEAIPSKIKKML 65

Query: 62  GITPQKALR--DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            +T +      +  +  E  + + +        I+  +  +F++ + +          Y 
Sbjct: 66  HLTDEDLKHSVEPKIVFEKLQSVLKEL--GPEPIVLAHYAQFENSFLKQ--------FYL 115

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                    + LL   +      P             S  L+ +A      +   ++  +
Sbjct: 116 EQRQTDELNFKLLCTQKIAKRLLPHL----------PSHNLKAIAGYFKWPNSPKNEINS 165

Query: 180 DVYATLALVWLI 191
            V  T+ +   +
Sbjct: 166 HVSMTIHVWLQL 177


>gi|330804902|ref|XP_003290428.1| hypothetical protein DICPUDRAFT_154946 [Dictyostelium purpureum]
 gi|325079439|gb|EGC33039.1| hypothetical protein DICPUDRAFT_154946 [Dictyostelium purpureum]
          Length = 175

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGV 28
           +  D ET G  VA D   + + +
Sbjct: 30 ILFLDTETTGLSVATDEIIEVSII 53


>gi|222083074|ref|YP_002542439.1| hypothetical protein Arad_9896 [Agrobacterium radiobacter K84]
 gi|221727753|gb|ACM30842.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 204

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 21/177 (11%)

Query: 22  PAQFAGVRV--DRQWEKIESTEVFFCKPADD---YLPDPEAVFITGITPQKALRDGVVEA 76
             Q   V++  +  +  + + + +          Y  DP    +TGIT +    +GV   
Sbjct: 32  IVQIGAVKLGLESDFPILGTYKAYVQPIDRFGNRYALDPFFTKLTGITEEAIETEGVTLQ 91

Query: 77  EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136
           +    I  F          ++  + +        Y    D+          R+D    + 
Sbjct: 92  DALSGIDSFSGGAG----FWSWGKDELNMVAISCYIAGVDAPI-----PARRFDNAVKLL 142

Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE 193
                  +            S KL D            HDA  D  +    +  + +
Sbjct: 143 LAAGMPIE------DLAKTPSNKLADYYNVEHPPL-QGHDALDDALSVSYTLQHLMK 192


>gi|330843720|ref|XP_003293795.1| hypothetical protein DICPUDRAFT_84319 [Dictyostelium purpureum]
 gi|325075848|gb|EGC29690.1| hypothetical protein DICPUDRAFT_84319 [Dictyostelium purpureum]
          Length = 362

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 9/68 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  I D ET G   +     + +   ++         E F+ K        PE+  I  +
Sbjct: 278 NIFILDSETTGL-TSNAEIIELSCACLNG--------EAFYRKSNPTIPITPESTKINNL 328

Query: 64  TPQKALRD 71
           T +     
Sbjct: 329 TSKDLAGH 336


>gi|254417569|ref|ZP_05031307.1| exonuclease superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196175667|gb|EDX70693.1| exonuclease superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 191

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/206 (9%), Positives = 53/206 (25%), Gaps = 26/206 (12%)

Query: 3   NHFVIYDYETF---GRDV--ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
           +  ++ D E     G+          +     +D        TE    KP    +     
Sbjct: 6   DQILVIDVEATCWQGKPPPGQESEIIEIGVCLLDCHSHSAVKTESMLVKPERSTV-SEFC 64

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +T +T ++    G+  A+   R+ +         + +  +           ++    S
Sbjct: 65  TELTTLTQEQV-DQGMSFAQACERLQK-------RYLSHQRVWASYGEYDKNQFQKQCQS 116

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           +   +   +   ++       Y+   +     +      S +               H  
Sbjct: 117 FGVEYPFDSRHINVKTWFALAYSLQKEVGMLKALFLLKLSLQ------------GTHHRG 164

Query: 178 KADVYATLALVWLIREKKPKLFEYLY 203
             D      ++  +   + + F    
Sbjct: 165 VDDAANIGRILSQLLWNQDRRFNRYL 190


>gi|229047203|ref|ZP_04192817.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH676]
 gi|228724164|gb|EEL75507.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus AH676]
          Length = 205

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 49/182 (26%), Gaps = 21/182 (11%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V+++    + IE                     +TGIT +  +       +  
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSEL---VKPSARLTRHTTKLTGITKKDLMGVEK-FPQII 73

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
            +  QF     +  + +   + D  +  +       +      +N   R DL   +   Y
Sbjct: 74  EKFIQFIGE-GSIFVSW--GKEDYRFLSHDCTLYGVECPSIEKEN---RIDLQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
                        +   S       LA   E    H A AD   T  ++  +  ++    
Sbjct: 128 ---------EELFEHTPSLHFAVEQLALTWE-GKQHRALADAENTANILLKVYSERDINK 177

Query: 200 EY 201
            Y
Sbjct: 178 RY 179


>gi|163753221|ref|ZP_02160345.1| hypothetical protein KAOT1_13712 [Kordia algicida OT-1]
 gi|161326953|gb|EDP98278.1| hypothetical protein KAOT1_13712 [Kordia algicida OT-1]
          Length = 182

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 13/143 (9%)

Query: 2   TNHFVIYDYETF--------GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
           T + +I D E          G    ++   +     ++ +  +I   E    KP    + 
Sbjct: 4   TKNIIIVDLEATCWNEPIPNG---QVNEIIEIGICVLNTETSEITQNEGILIKPERSEI- 59

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
                 +T IT +    +G+   E   ++   ++ P             +   R    RN
Sbjct: 60  SEFCTELTTITQELIDTEGISFVEACTKLRVEYN-PKQYTWASYGQYDLNMLKRQCKLRN 118

Query: 114 FYDSYRWSWDNGNSRWDLLDVMR 136
                     N  + +  +  +R
Sbjct: 119 VEYPMGQEHINVKTTFTEVKGLR 141


>gi|289615698|emb|CBI57619.1| unnamed protein product [Sordaria macrospora]
          Length = 613

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 49/182 (26%), Gaps = 28/182 (15%)

Query: 3   NHFVIYDYETF----GRDVALD--RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDP 55
           + +V+    T     G  V  D     +   + +D    E+I    V   KP +     P
Sbjct: 12  DRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANNLEEIHRESVL-VKPVN-TPITP 69

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQF----FSVPNTCIIGYNNIRFDDYYSRNIFY 111
               +T +T +     G    +   R   F     + PN   +      +D         
Sbjct: 70  LCTSLTTLTWEHVRNAG-TFRDAINRFDAFASEHLTGPNLDFVFVTLEAWDLRVQLPREA 128

Query: 112 RNF---YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
           R+       Y       + R            +       P       S  L ++  A  
Sbjct: 129 RDKAVVLPPYLQHSRTFDLR----------TEYQRWQQHHPESLPFGPS-SLANICAALE 177

Query: 169 IE 170
           +E
Sbjct: 178 VE 179


>gi|85100635|ref|XP_960999.1| hypothetical protein NCU06684 [Neurospora crassa OR74A]
 gi|28922535|gb|EAA31763.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|28949923|emb|CAD70909.1| related to centractin (ARP1) [Neurospora crassa]
          Length = 613

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 49/182 (26%), Gaps = 28/182 (15%)

Query: 3   NHFVIYDYETF----GRDVALD--RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDP 55
           + +V+    T     G  V  D     +   + +D    E+I    V   KP +     P
Sbjct: 12  DRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANNLEEIHRESVL-VKPVN-TPITP 69

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQF----FSVPNTCIIGYNNIRFDDYYSRNIFY 111
               +T +T +     G    +   R   F     + PN   +      +D         
Sbjct: 70  LCTSLTTLTWEHVRNAG-TFRDAINRFDAFASEHLTGPNLDFVFVTLEAWDLRVQLPREA 128

Query: 112 RNF---YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
           R+       Y       + R            +       P       S  L ++  A  
Sbjct: 129 RDKAVVLPPYLQHSRTFDLR----------TEYQRWQQHHPESLPFGPS-SLANICAALE 177

Query: 169 IE 170
           +E
Sbjct: 178 VE 179


>gi|251777997|ref|ZP_04820917.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082312|gb|EES48202.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 974

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 40/129 (31%), Gaps = 14/129 (10%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           ++ +  D ET G D       +   V++ +      +T     +P  +       +   G
Sbjct: 9   DNVIYLDIETTGLDENNCEIIEIGAVKI-KNLSV--TTYEVLIRPKGNVPVSIYKLCQ-G 64

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTC---------IIGYNNIRFDDYYSRNIFYRN 113
           +  ++ +    +E +  + +  F                 + Y+     +    ++    
Sbjct: 65  LKEEELMNSRHLE-DIKKELLVFLEDLPLICHNGGFERKFLSYHIPEIKNQIFDSMELSA 123

Query: 114 FYDSYRWSW 122
             + +R  +
Sbjct: 124 ILEPWRKEY 132


>gi|227546622|ref|ZP_03976671.1| oligoribonuclease [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212939|gb|EEI80818.1| oligoribonuclease [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 216

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 60/208 (28%), Gaps = 31/208 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +  D E  G D+   D   + + V  D     ++    +  KP++          +  +
Sbjct: 17  LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEK--------AVNHM 68

Query: 64  TP---QKALRDGVV------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                Q   R G++            E + +  + +F       ++  N I  D  +  +
Sbjct: 69  NDFVRQMHTRSGLINEWENGLSLAEAEQKVTEYVLRFTPEGVRPLLAGNTIGSDKKFLDH 128

Query: 109 IFYRNFYDSYRW-----SWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
                    +       ++     RW   + +                   D    ++  
Sbjct: 129 CMPNLMSHLHYRSVDVSTFKELARRWYPAVYENRPPKNGGHRALADIIESLDELRYYRKA 188

Query: 162 DLALANGIEHVNAHDAKADVYATLALVW 189
            +A A G +   +    AD+ AT  L  
Sbjct: 189 FMAPAPGPDDAASKAIAADIVATSILNK 216


>gi|195470929|ref|XP_002087759.1| GE18196 [Drosophila yakuba]
 gi|194173860|gb|EDW87471.1| GE18196 [Drosophila yakuba]
          Length = 361

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 23/136 (16%)

Query: 4   HFVIYDYETFGRDVALD---RPAQF------AGVRVDRQWEKIES--TEVFFCKPA---- 48
            F + D ET       +      +       A +    + E       +     P     
Sbjct: 19  TFAVLDLETNNLPAYQNNRVAITELCIYAFEAALLKKEKNEDQGEKKEQELPAAPRVLHK 78

Query: 49  ------DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIR 100
                       PEA  ITG++     R+  ++A+ ++ I+ F        C++ +N   
Sbjct: 79  LNLLFQPSMKVFPEAERITGLSNYLLERESKLDADAAQLINGFLKHLPGPVCLVAHNGWG 138

Query: 101 FDDYYSRNIFYRNFYD 116
           FD    R  F +   +
Sbjct: 139 FDFPILRQTFEKLNIE 154


>gi|323359751|ref|YP_004226147.1| oligoribonuclease [Microbacterium testaceum StLB037]
 gi|323276122|dbj|BAJ76267.1| oligoribonuclease [Microbacterium testaceum StLB037]
          Length = 192

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 31/127 (24%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-------ITGITP 65
            G D+A+D   + A V  D +   ++        P    +  P+A         +T    
Sbjct: 2   TGLDLAVDELVEIAVVVTDFELNVLD--------PGFHIVIKPDASAMANMGEFVT---- 49

Query: 66  QKALRDGV------------VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           +     G+             E +    I +F  V     +  N I  D  +      R 
Sbjct: 50  EMHRSSGLLDEIPNGVSLADAEFQALEYIQRFAPVEGKAPLAGNTIGTDRMFLAKYMPRV 109

Query: 114 FYDSYRW 120
               +  
Sbjct: 110 DRWLHYR 116


>gi|197302182|ref|ZP_03167241.1| hypothetical protein RUMLAC_00908 [Ruminococcus lactaris ATCC
           29176]
 gi|197298613|gb|EDY33154.1| hypothetical protein RUMLAC_00908 [Ruminococcus lactaris ATCC
           29176]
          Length = 231

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 24/197 (12%)

Query: 4   HFVIYDYETFGRDVAL--------DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           ++++ D E                    Q   V +D ++ + +     +  P    + D 
Sbjct: 14  NYLVIDLEMCKVPKDYRNKNYKYASEIIQIGAVLLDERYRRRDEI-CLYVHPEHG-VIDN 71

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +TGI  ++         E    + ++       +  ++N  F    S  +  +   
Sbjct: 72  FIANMTGIKNRQIKNAPK-LRERLLELTEWIGDREYQVFAWSNSDF-SQLSHEVRSKKLQ 129

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
           D    S+       D  +V    Y+F                   + L L +  +    H
Sbjct: 130 DEKIQSFMAPERWIDYQEVFGKKYSFEKAVSL------------QEALMLCDLTQDGRMH 177

Query: 176 DAKADVYATLALVWLIR 192
           D   D   T  L+  + 
Sbjct: 178 DGLDDALNTAKLIRKLE 194


>gi|291232871|ref|XP_002736377.1| PREDICTED: three prime repair exonuclease 1-like, partial
           [Saccoglossus kowalevskii]
          Length = 261

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 59/213 (27%), Gaps = 44/213 (20%)

Query: 3   NHFVIYDYETFGRDVALD----RPAQFAGVRVDRQW-----------EKIESTEVFFCKP 47
             FV  D E  G     D       + A   + RQ               +      C  
Sbjct: 62  QTFVFLDLEATGL-PESDGTLPDITELAMTAIARQGMTGNSVKGAIPRIQDKL--LLC-L 117

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDD 103
                  P A  +TG++ Q   +    + +      +  F     P  C++ +   RFD 
Sbjct: 118 TPQKDVTPTAEKMTGLSKQLLEKHCKRKMDLNVDGALRYFLRRQTPPVCLVSHAGDRFDF 177

Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
              R                      D +D +     ++ D +++        +  L +L
Sbjct: 178 PVLRAE-------------------LDKVDSV-WDCIYTIDSLKFFQYYMPKQNRSLPNL 217

Query: 164 ALANGIEHVNAHDAKADVYATLALVWLIREKKP 196
                +     H+A+ DV   + L+        
Sbjct: 218 CKRF-LGFETDHNAEGDVTGLVLLLSSCTFADT 249


>gi|259508093|ref|ZP_05750993.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|259164316|gb|EEW48870.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 385

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 35/112 (31%), Gaps = 9/112 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V    ++ G   +  R   F  + +    E +E+             P P    + G+T
Sbjct: 56  YVAVTIQSSGIHPSTSRMITFTAITLTADNEPVETFHAV---LNPGSDPGPF--HLHGVT 110

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            ++        ++  + + +     +   +  +N      +  +   R   D
Sbjct: 111 DEEFRSA-RRFSQILKAVDRLI---DGRTLILHNAPRTWGFIVSEAKRAMND 158


>gi|25026770|ref|NP_736824.1| DNA polymerase III subunit epsilon [Corynebacterium efficiens
           YS-314]
 gi|23492049|dbj|BAC17024.1| putative DNA polymerase III [Corynebacterium efficiens YS-314]
          Length = 420

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 35/112 (31%), Gaps = 9/112 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V    ++ G   +  R   F  + +    E +E+             P P    + G+T
Sbjct: 91  YVAVTIQSSGIHPSTSRMITFTAITLTADNEPVETFHAV---LNPGSDPGPF--HLHGVT 145

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            ++        ++  + + +     +   +  +N      +  +   R   D
Sbjct: 146 DEEFRSA-RRFSQILKAVDRLI---DGRTLILHNAPRTWGFIVSEAKRAMND 193


>gi|302335963|ref|YP_003801170.1| hypothetical protein Olsu_1181 [Olsenella uli DSM 7084]
 gi|301319803|gb|ADK68290.1| conserved hypothetical protein [Olsenella uli DSM 7084]
          Length = 323

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 42/193 (21%), Gaps = 10/193 (5%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            D ET  RD             +D   + +  +    +F  P            I  IT 
Sbjct: 136 IDLETTSRDPDRGYIINLGFEFMDLAPKAKPHDGHAAYFGLPDIYRERGVPLANIHHITW 195

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      +  R      +      I  +N  F+D      +     + Y  +   G
Sbjct: 196 DDLAGK-TPFRQARREQEALLAAFRAFPIMAHNASFED-----SWLTLHLEGYAEARKAG 249

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                 +D         PD    P     A                   H    DV    
Sbjct: 250 QVVV--IDSRDICRRIDPDYKTLPHDSRPAALESWARRRGTLKAGEKERHLGLEDVDLMF 307

Query: 186 ALVWLIREKKPKL 198
             V     ++   
Sbjct: 308 RTVQAEFRERNMF 320


>gi|298711928|emb|CBJ48615.1| phosphotransferase [Ectocarpus siliculosus]
          Length = 528

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 19/178 (10%)

Query: 21  RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
              +F  V +D    + ++   V + +P    +  P    +TGI  Q  +  GV+  E  
Sbjct: 335 EVIEFPTVLLDAHSLKVLDEFRV-YVRPVRHPILTPFCTSLTGI-EQSTVDGGVLFEEAL 392

Query: 80  RRIHQFFSVPNTC---------IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130
            +  +F    +           +   N        ++          +  SW N    + 
Sbjct: 393 SQHTEFLRRNSCLPGQERSCLFVTCGNWDLKTMMPAQCKLIDAPVPPHFNSWANIKEVFR 452

Query: 131 LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
            +     +Y  +    + P          +  L+    +     H    D      + 
Sbjct: 453 DV-----MYRAARQSQRRPRGGKVGGMPAM--LSALGLVLEGRHHSGLDDCRNIARIA 503


>gi|124267397|ref|YP_001021401.1| hypothetical protein Mpe_A2210 [Methylibium petroleiphilum PM1]
 gi|124260172|gb|ABM95166.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 175

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 9/106 (8%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGIT 64
            I D E  G       P +   V  D              +P  D+L  DP+A  +  I 
Sbjct: 14  TILDIEASGFG-RGSYPIEVGFVLPD------GRAWCSLIRPEPDWLHWDPQAQALHHIP 66

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNI 109
            + A R G   AE +  ++Q  +       G+ ++  +        
Sbjct: 67  RELAQRHGRSAAEVAGLLNQRLNGRVAYCDGWAHDYPWLARLYDAA 112


>gi|307701951|ref|ZP_07638959.1| DNA polymerase III subunit epsilon [Streptococcus mitis NCTC 12261]
 gi|307616596|gb|EFN95785.1| DNA polymerase III subunit epsilon [Streptococcus mitis NCTC 12261]
          Length = 117

 Score = 42.9 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 12/105 (11%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             ++ +D E    +    +    Q + VR  R  ++I + + +                +
Sbjct: 5   EDYIAFDLE---FNQHEGQTHLIQVSAVRF-RDGQEIAAYDSY---VHTSVPLKSFINGL 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
           TGIT +       VE +  +   +F       ++GYN  + D   
Sbjct: 58  TGITAETLKDAPPVE-KVIKDFQEFVGSLP--MVGYNAAKSDLPI 99


>gi|145509679|ref|XP_001440778.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408006|emb|CAK73381.1| unnamed protein product [Paramecium tetraurelia]
          Length = 431

 Score = 42.9 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 63/205 (30%), Gaps = 19/205 (9%)

Query: 3   NHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           ++ +I D+E           L    +F     + Q  K++     + KP ++ +      
Sbjct: 235 DNIIILDFEATCVRESDKKYLQEIIEFPAQVYNVQERKVKKEFQKYIKPVENPILSDFCT 294

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGIT Q+   +G++  +      +F      C I      +D +  +    R      
Sbjct: 295 ELTGITQQQV-DEGILLDQAINEFIEFKQGLQKCCILT-CGDYDLHLLKKEAARKGIPI- 351

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                  +        ++ ++  S    + P         KL  L           H   
Sbjct: 352 -------SRELQYYINIKKVFPKSLRNPKDPKDPCMVEMLKLCGL-----DLLGRHHSGI 399

Query: 179 ADVYATLALVWLIREKKPKLFEYLY 203
            DV     +V  +  +K   F+   
Sbjct: 400 DDVKNITRIVHYLINEKNFQFDERM 424


>gi|288926311|ref|ZP_06420235.1| exonuclease [Prevotella buccae D17]
 gi|288336916|gb|EFC75278.1| exonuclease [Prevotella buccae D17]
          Length = 163

 Score = 42.9 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 42/194 (21%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---- 57
            N+F   D+ET   +            R       +          +   L  PE+    
Sbjct: 1   MNNFAAIDFET--ANSE----------RTSVCSVGVVVVRDGVIADSFYSLIQPESNYYT 48

Query: 58  ---VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
                + G+T        V       RI +         +  +N  FD+         + 
Sbjct: 49  YWCTRVHGLTQADTETAPV-FPHVWERITELI---GDLPLVAHNSPFDE---------SC 95

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
             +    +      +   D +R      P             + +LQ +A A G +    
Sbjct: 96  LKAVFRCYQMDYPDYRFYDTLRTARRVFPHL----------PNHQLQTVAAACGYDLTCH 145

Query: 175 HDAKADVYATLALV 188
           H A AD  A   + 
Sbjct: 146 HHALADAEACARIA 159


>gi|182419685|ref|ZP_02950926.1| exonuclease family [Clostridium butyricum 5521]
 gi|237665882|ref|ZP_04525870.1| exonuclease family [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376422|gb|EDT74003.1| exonuclease family [Clostridium butyricum 5521]
 gi|237658829|gb|EEP56381.1| exonuclease family [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 309

 Score = 42.9 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 50/201 (24%), Gaps = 15/201 (7%)

Query: 16  DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVE 75
               D   Q   V++D   + I S +  + KP      +     +  I       +GV  
Sbjct: 30  SYMTDEVLQIGAVKLDENLKYISSFK-RYIKPQFLVTLNKRVQDLIQIDMNYIKTNGVKF 88

Query: 76  AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVM 135
                    F       ++       D       F  N   +      N     DL  V+
Sbjct: 89  KRAVYEFMDFIGENLKDVVIITWGYSDWIILNKNFEANKIKNI---NLNDAYYIDLQRVV 145

Query: 136 RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKK 195
                   D            S K               HDA  D   T +++  I    
Sbjct: 146 MNKEGIKID-----------PSLKGIAEKYNISACRDKYHDAYYDAVITKSILQNIGIDD 194

Query: 196 PKLFEYLYDYRNKNQLRKLID 216
              + Y   ++    + K  D
Sbjct: 195 LYKYNYFISFKKAKDINKSSD 215


>gi|56478238|ref|YP_159827.1| hypothetical protein ebA4923 [Aromatoleum aromaticum EbN1]
 gi|56314281|emb|CAI08926.1| hypothetical protein ebA4923 [Aromatoleum aromaticum EbN1]
          Length = 244

 Score = 42.9 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 52/184 (28%), Gaps = 46/184 (25%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +VI + E  G D+   R      + VD     +     F+ +   D    P    I  +T
Sbjct: 75  YVIVNTEATGLDLDAARLLAVGAIAVDGGL--LSPAASFYARLEPD----PATALINLLT 128

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                                FS     ++               F R   +        
Sbjct: 129 ---------------------FSGAGPVVV-----------FNAGFNRTLLERALGEHLG 156

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
               W  LD+   + A   + I  P+        +L D   A GIE    H A  D +A 
Sbjct: 157 IKPEWTWLDLHWLLPALYGELIDRPA--------RLADWMKALGIETFQRHHALGDAWAI 208

Query: 185 LALV 188
             L+
Sbjct: 209 AQLM 212


>gi|168702958|ref|ZP_02735235.1| DNA polymerase I (PolI) [Gemmata obscuriglobus UQM 2246]
          Length = 203

 Score = 42.5 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 11/24 (45%), Gaps = 2/24 (8%)

Query: 6  VIYDYETFGRDVALDRP--AQFAG 27
          V  D ET G D A DR    Q A 
Sbjct: 51 VAVDTETTGLDPARDRVRLIQVAA 74


>gi|224827136|ref|ZP_03700232.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
           2002]
 gi|224600645|gb|EEG06832.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
           2002]
          Length = 202

 Score = 42.5 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 47/183 (25%), Gaps = 20/183 (10%)

Query: 12  TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71
           T   DVA         VR+               KP        E V + G+ P+     
Sbjct: 37  TTSLDVAEAELLTIGAVRLSGNRIVTSEALDLLVKP--GRPLTREGVGLHGLRPRDLSG- 93

Query: 72  GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131
           G+      R +  F       ++GY          + +             +     +D 
Sbjct: 94  GLDAEAAVRCLLDFI--GGRPVLGYYLEFDIAVLDKYLRPLLGIGLPNRQVEISGRYYD- 150

Query: 132 LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191
                          +   + +G    ++  L    G+  +  HDA         L   +
Sbjct: 151 --------------YKLRQQPNGRVDLRMAALIDDLGVPVLPRHDALNKAITAAMLYLAL 196

Query: 192 REK 194
           + +
Sbjct: 197 KRR 199


>gi|227832010|ref|YP_002833717.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184134|ref|ZP_06043555.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453026|gb|ACP31779.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 516

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/105 (9%), Positives = 34/105 (32%), Gaps = 9/105 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           FV    +T G   +  R      + ++ + E  +              P P+   + G++
Sbjct: 74  FVALTIQTTGIHPSTGRLLTVDALTLNAEGEIGQEFHAV---INPGEDPGPK--HLHGLS 128

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
            ++    G   +   + + +     +   +  ++  +   +  + 
Sbjct: 129 AEEVQ-AGQSFSMLLKPLDRLI---DGRTLIVHDAPYTWGFIVSE 169


>gi|18496941|ref|NP_569791.1| hypothetical protein TM4_gp57 [Mycobacterium phage TM4]
 gi|4336092|gb|AAD17623.1| gp57 [Mycobacterium phage TM4]
          Length = 177

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 49/193 (25%), Gaps = 32/193 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT   V+ D ET G         + A V +D   E      V   + A      P A+ +
Sbjct: 1   MTRQLVVVDCETTGLH-DGAAILEVAAVNIDTGAELHFVPFVTREQLAQA---QPMAMQM 56

Query: 61  T-----GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
                 GI   +             ++    +       G +N  FD             
Sbjct: 57  NRYYERGI--WQRRLSPDSTDAAYWKLANMLA---GNTFGGSNPAFDSRLLAAA-----M 106

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                 W        L D+                  D      L  +    G+   + H
Sbjct: 107 PDGAPEW-----HHRLADLAAFTAGKL--------NLDPVELPGLDAVCERLGVTVSDRH 153

Query: 176 DAKADVYATLALV 188
            A AD +AT    
Sbjct: 154 SALADAHATATCF 166


>gi|268578591|ref|XP_002644278.1| Hypothetical protein CBG14050 [Caenorhabditis briggsae]
          Length = 212

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 26/199 (13%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +H +I D+ET       D      QF+ V +D + E I      F +P  + +       
Sbjct: 9   DHLLILDFETTSDGEKHDYPFEVIQFSVVPLDVKLEGIA--FNKFVRPVVNPILSNYCAD 66

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPN------TCIIGYNNIRFDDYYSRNIFYRN 113
            TGI  +             ++  ++             +   +   +     +    R 
Sbjct: 67  FTGIKQEFLNAAD-TFLVVYKQFLEWLQKNGFQERKLAIVCDSSQDMWRIAQYQFRLVRE 125

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-V 172
              S    W N    +D             DG++   ++       ++ ++   GIE   
Sbjct: 126 TMPSMFRQWINIKRTFD-------------DGLEDGQKNKLVGKSNIEKMSSYLGIELSG 172

Query: 173 NAHDAKADVYATLALVWLI 191
            AHDA +D     A+   I
Sbjct: 173 KAHDALSDCLNIAAITQKI 191


>gi|260579664|ref|ZP_05847528.1| oligoribonuclease [Corynebacterium jeikeium ATCC 43734]
 gi|258602206|gb|EEW15519.1| oligoribonuclease [Corynebacterium jeikeium ATCC 43734]
          Length = 190

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 35/138 (25%), Gaps = 10/138 (7%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFITGIT--PQKA 68
            G D       + A +  D     ++          +  L   +A    + G +   ++ 
Sbjct: 2   TGLDPDQHVLVEIAVIVTDADLTPLDEGLDLVIHATERDLARMDAVVTKMHGESGLTEQI 61

Query: 69  LRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
               +   E   ++  +            +  N I  D  +     Y    D Y      
Sbjct: 62  RASDITLEEAEEQVLDYVKKHVPTAGVAPLAGNTISADRKFI--NRYMPHLDQYLHYRMI 119

Query: 125 GNSRWDLLDVMRAIYAFS 142
             S    L      + ++
Sbjct: 120 DVSSLKELARRWYPHVYN 137


>gi|256083202|ref|XP_002577838.1| prion interactor pint1 [Schistosoma mansoni]
 gi|238663171|emb|CAZ34076.1| prion interactor pint1, putative [Schistosoma mansoni]
          Length = 191

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 49/194 (25%), Gaps = 21/194 (10%)

Query: 7   IYDYETFGRDVALDR------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + D+E        DR        +F  + ++    + E+    + +P  + +       +
Sbjct: 2   VLDFEAT---CEQDRKLPVAEIIEFPVLMINASTLQTEAVFHRYVRPTINPVLSDFCTEL 58

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI                +  + F    N   I Y              +    D    
Sbjct: 59  TGIIQSMVDDQP-DLPTVLKIFNSFLDANNLNTIPYQF-----------AFVTCGDCDLK 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +      +   +DV      +      + +         +  L+  N       H    D
Sbjct: 107 TMLPRQCKALGIDVPDYFKQWINLKQVYCNVMGQFPFGMMSMLSGLNIKHTGRHHSGIDD 166

Query: 181 VYATLALVWLIREK 194
            +    ++  +   
Sbjct: 167 CHNIANILRELIRC 180


>gi|195031133|ref|XP_001988295.1| GH11086 [Drosophila grimshawi]
 gi|193904295|gb|EDW03162.1| GH11086 [Drosophila grimshawi]
          Length = 343

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 38/137 (27%), Gaps = 32/137 (23%)

Query: 4   HFVIYDYETFGR---DVALDRPAQFAGVRVD-----------RQWEKIESTE--VFFCKP 47
            F + D ET      +       +      D            + + +      +   + 
Sbjct: 20  TFAVLDLETSNLPVHNRNRVSITELCIYAFDPAVLKGSAETQEELQTLGRISSPILTNRV 79

Query: 48  A--------------DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT-- 91
                             +  P+A  +TG+      R+  ++   +  + +F        
Sbjct: 80  PEPPRVMHKLNLLFQPSMMVHPDAERVTGLNNYILERESKLDENAAHIVLKFLEHLPPPV 139

Query: 92  CIIGYNNIRFDDYYSRN 108
           C++ +N   FD    RN
Sbjct: 140 CLVAHNGWEFDFPIVRN 156


>gi|289740231|gb|ADD18863.1| three prime repair exonuclease [Glossina morsitans morsitans]
          Length = 314

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 40/145 (27%), Gaps = 30/145 (20%)

Query: 4   HFVIYDYETFGRD---VALDRPAQFAGVRVDRQ--WEKIESTEVFFCK----PADDYLPD 54
            F + D ET G            + + +    +   ++ E       K     +   +P+
Sbjct: 9   TFAVIDLETNGLPELQFNKCSITELSIIAFSSKYEGKQTEKQSTTVRKGDHLLSPKSIPE 68

Query: 55  -------------------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCI 93
                              PEA   TG+       +   +   +  +  F        C+
Sbjct: 69  LPRALHKLNLMVNPLGSIGPEAEEKTGLNNWMLEHERPFDKSTADLLISFLQRLQQPVCL 128

Query: 94  IGYNNIRFDDYYSRNIFYRNFYDSY 118
           + +N + FD    R +  +      
Sbjct: 129 VAHNGLGFDFPVLRYVMKKLDLKFP 153


>gi|308511231|ref|XP_003117798.1| CRE-CRN-4 protein [Caenorhabditis remanei]
 gi|308238444|gb|EFO82396.1| CRE-CRN-4 protein [Caenorhabditis remanei]
          Length = 300

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 64/196 (32%), Gaps = 16/196 (8%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEA 57
           ++ ++ D+ET    V  D      QF+   +D +   I     F  + +P  +       
Sbjct: 9   DNLLMLDFETTSDGVYHDYPFEVIQFSVAVLDVKSNTISDDVSFNEYVRPVINPKLSSYC 68

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGI  +   +         ++   +           NN     +   +   ++ +  
Sbjct: 69  ADLTGIKQETLDKAD-TFLNVYKKFLSWLDQ--------NNFEEKKFALVSDSRQDMWRI 119

Query: 118 YRWSWDNGNSRWDLLDVMRAI-YAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAH 175
            ++ +         +       +    + +    RD    +  ++ +A+ +G++    AH
Sbjct: 120 AQYQFRLCREPLPSMFRQYINLWRTFGENMTMEERDKLEGNTYMEKMAIFHGVKSPGGAH 179

Query: 176 DAKADVYATLALVWLI 191
           +A  D      +   I
Sbjct: 180 NAMIDCLTLARITQKI 195


>gi|228912179|ref|ZP_04075894.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           IBL 200]
 gi|228847516|gb|EEM92455.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           IBL 200]
          Length = 273

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 49/175 (28%), Gaps = 21/175 (12%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V+++    + IE                     +TGIT +  +       +F 
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSEL---VKPSARLTRHTTKLTGITKEDLIG----VEKFP 70

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           + I +F        I  +  + D  +  +    +  +      +N   R DL   +   Y
Sbjct: 71  QIIEKFIQFIGEDCIFVSWGKEDYRFLSHDCALHGVECPSIEKEN---RIDLQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
                        +   S +     L    E    H A AD   T  ++  +  +
Sbjct: 128 ---------EELFEHTPSLQFAVEQLGLTWE-GKQHRALADAENTANILLKVYSE 172


>gi|148652873|ref|YP_001279966.1| exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           PRwf-1]
 gi|148571957|gb|ABQ94016.1| Exodeoxyribonuclease X [Psychrobacter sp. PRwf-1]
          Length = 237

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 60/272 (22%), Gaps = 52/272 (19%)

Query: 2   TNHFVIYDYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEV-FFCKPADDYLPDPEAVF 59
              ++  D ET G  D       + A   +     KIE  +     +          ++ 
Sbjct: 1   MTTYI-LDTETTGLVDP---HMTEAAYSIIAINNAKIEVIQAPRSKRFNPLKPISLGSMA 56

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            + I  +    +     EF              ++G+N                      
Sbjct: 57  TSHICDEDVAHEP-PHTEF------RLPNSVEYLVGHNIDYDMAVLKNAGVTHTP----- 104

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-----IEHVNA 174
                                                S KL  L           +  +A
Sbjct: 105 --------------------KLICTKAMSSYLLPTLESHKLVSLLYHFHRQVAREQAKHA 144

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           H A  D+Y T  ++  + E               + +  +  +   + +  +       +
Sbjct: 145 HAAIYDIYFTQLVLGSLIE---------LANSQGHNITDVESLYQFSEMARIPTHLSFGK 195

Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQ 266
                I  +A        +       ++  + 
Sbjct: 196 YKGQAITELAASSDGAGYLKWLMGQDNIDPYL 227


>gi|332308028|ref|YP_004435879.1| hypothetical protein Glaag_3682 [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|332175357|gb|AEE24611.1| hypothetical protein Glaag_3682 [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 165

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 6/82 (7%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
          +I D E  G   A   P +   V +D                 D      EA  + GI+ 
Sbjct: 9  IILDIEASGFG-ATSYPIEVG-VAMDNDT----RFCRLIRPQTDWQHWSEEAQGLHGISR 62

Query: 66 QKALRDGVVEAEFSRRIHQFFS 87
             L  G    +    ++Q  S
Sbjct: 63 SMLLEKGAPVQQVCIELNQLLS 84


>gi|315609065|ref|ZP_07884035.1| exonuclease [Prevotella buccae ATCC 33574]
 gi|315249269|gb|EFU29288.1| exonuclease [Prevotella buccae ATCC 33574]
          Length = 163

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 46/196 (23%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRV---------DRQWEKIESTEVFFCKPADDYL 52
            N+F   D+ET   +            R           R     +S      +P  +Y 
Sbjct: 1   MNNFAAIDFET--ANSE----------RTSVCSVGVVVVRDGVIADSFYSLI-QPEPNY- 46

Query: 53  PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  + G+T        V       RI +         +  +N  FD+         
Sbjct: 47  YTYWCTRVHGLTQADTETAPV-FPHVWERITELI---GDLPLVAHNSPFDE--------- 93

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
           +   +    +      +   D +R      P             + +LQ +A A G +  
Sbjct: 94  SCLKAVFRCYQMDYPDYRFYDTLRTARRVFPHL----------PNHQLQTVAAACGYDLT 143

Query: 173 NAHDAKADVYATLALV 188
             H A AD  A   + 
Sbjct: 144 CHHHALADAEACARIA 159


>gi|332991573|gb|AEF01628.1| putative DNA polymerase [Alteromonas sp. SN2]
          Length = 227

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 60/215 (27%), Gaps = 20/215 (9%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D E    +        F  V        +E++     K        P    I G+    
Sbjct: 33  IDLELTSLNANESEITSFGWVCGRNSSIALETSAYSVVKTKASLGQSP---VIHGLIQDN 89

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
             +   +E      + +F +   + ++  +N   D      +F R    +    +     
Sbjct: 90  IAKGEKIE----DVLTKFTAQLPSKVLVIHNANLDLAVLDAVFRRLNLPAQEVYY----- 140

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
             D L +   +Y    +    PS      S  L    L  G+  V  H+A  D  A L L
Sbjct: 141 -IDTLQLA--LYELKKEHEVVPSN-----SASLGACLLRAGLPAVPQHNALEDAMAALLL 192

Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
            +          +      +  +      +  + P
Sbjct: 193 CYAQLASLGLTQQSCLADLSHTKALGKKTLGVVKP 227


>gi|225719666|gb|ACO15679.1| Oligoribonuclease, mitochondrial precursor [Caligus clemensi]
          Length = 230

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 15/116 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-----PDPEAVF 59
            V  D E  G D+  D   + A +  D    ++           D  L        E   
Sbjct: 54  LVWIDCEMTGLDIEKDVLMEVAVIVTDSSLREVTPGINLIIHQPDSILNAMTEFPEECHA 113

Query: 60  ITGITPQ------KALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRN 108
           +TG+T                E +  R I Q  S    T ++  N++  D  + + 
Sbjct: 114 LTGLTEACRASQTDLRNA---EDQICRHIRQGLSGTTGTPLLAGNSVGHDLKFLQK 166


>gi|115661024|ref|XP_001191081.1| PREDICTED: similar to Three prime repair exonuclease 1
           [Strongylocentrotus purpuratus]
 gi|115931226|ref|XP_001176766.1| PREDICTED: similar to Three prime repair exonuclease 1
           [Strongylocentrotus purpuratus]
          Length = 438

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 38/141 (26%)

Query: 3   NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQW-------------------------- 34
           N FV  D+ET       DR    + + + V+R                            
Sbjct: 10  NSFVFLDFETSHLIP-RDRPKIIELSLIAVNRTGLLNSDVHTALNCARKENFTFDLSKVT 68

Query: 35  --EKIESTEVFFCKPADDYLPDPEAVFITGITPQKA-LRDGVVEAE-FSRRIHQFFSV-- 88
               I+        P  D    P++  +T +          +   E     ++ F S   
Sbjct: 69  LPRIIDK-LTLCVDPRKDT--SPQSAELTKLDKHNLDKNKKLPFDEDVIAMLNIFLSRQE 125

Query: 89  PNTCIIGYNNIRFDDYYSRNI 109
              C++ +N +RFD    R+ 
Sbjct: 126 APVCLVAHNGMRFDFAILRSE 146


>gi|255531261|ref|YP_003091633.1| hypothetical protein Phep_1356 [Pedobacter heparinus DSM 2366]
 gi|255344245|gb|ACU03571.1| hypothetical protein Phep_1356 [Pedobacter heparinus DSM 2366]
          Length = 86

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 17 VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76
                 +    +++ +  KI S+E    KP    +       +T ITPQ     G+  +
Sbjct: 13 KQQSEIIEIGIYKLNTETGKITSSEGILIKPVRSEI-SEFCTRLTSITPQMVEEHGISLS 71

Query: 77 EF 78
          E 
Sbjct: 72 EA 73


>gi|77164204|ref|YP_342729.1| hypothetical protein Noc_0680 [Nitrosococcus oceani ATCC 19707]
 gi|76882518|gb|ABA57199.1| hypothetical protein Noc_0680 [Nitrosococcus oceani ATCC 19707]
          Length = 110

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 6/67 (8%)

Query: 1  MTNHFVIYDYETFGRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
          + + +V+ D ET G                    +  +I  +  F  +     L   EA 
Sbjct: 14 LPDDYVVLDTETTGLPEENGLPDIVTLG--LTAVKNREISESVEFETRLQRRIL--EEAQ 69

Query: 59 FITGITP 65
           I GIT 
Sbjct: 70 SIHGITN 76


>gi|73955120|ref|XP_853896.1| PREDICTED: similar to small fragment nuclease (predicted) [Canis
           familiaris]
          Length = 161

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 14/40 (35%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
            G D+  D+  + A +  D     +        K  D+ L
Sbjct: 74  TGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 113


>gi|225435848|ref|XP_002262814.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 425

 Score = 42.5 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 71/253 (28%), Gaps = 34/253 (13%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           FV+ D+E      ++       +F  V V+    ++E +   + +P  ++L       +T
Sbjct: 141 FVVIDFEATCDKEKNPHPQEIIEFPSVLVNSMTGQLEDSFQIYVRPTCNHLLSDFCKELT 200

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPN---TCIIGYNNIRFDDYYS---RNIFYRNFY 115
           GI   +   +GV+ +E      ++        T         +D          F R   
Sbjct: 201 GIQQIQV-DNGVLLSEALLMHDRWLEQKGIKHTNFAVVTWSDWDCRVMLESECRFKRIRK 259

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNA 174
             Y   W N    +                        G     L++     G +    A
Sbjct: 260 PPYFNRWINLKVPF--------------------HEVFGNIRCNLKEAVQRAGLLWEGRA 299

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           H    D   T     L+     + F +        Q  +   I+          +    +
Sbjct: 300 HCGLDDAKNT---ARLLAHIMHRGFRFSITNSLIWQSTERPSIRQQFHDCQYGPIQHPHK 356

Query: 235 SNTALIAPVAWHP 247
               L   + +HP
Sbjct: 357 LKHPLGPFMRFHP 369


>gi|55959493|emb|CAI12493.1| prion protein interacting protein [Homo sapiens]
 gi|56203067|emb|CAI23195.1| prion protein interacting protein [Homo sapiens]
          Length = 176

 Score = 42.1 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 20  DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
               +F  ++++ +  +IEST   + +P       P    +TGI             +  
Sbjct: 45  GEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVL 103

Query: 80  RRIHQFFSVPN 90
            R+ ++ +   
Sbjct: 104 ERVDEWMAKEG 114


>gi|189210084|ref|XP_001941374.1| histone demethylase JARID1D [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187977467|gb|EDU44093.1| histone demethylase JARID1D [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1648

 Score = 42.1 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 58/431 (13%), Positives = 120/431 (27%), Gaps = 45/431 (10%)

Query: 59   FITGITPQKALRDGVVEAEFSRRIHQF-FSVPNTCIIGYNNIRFDDYYSRNI------FY 111
             +T +TP++ L+ GV      +R  +F  + P     G+N+    +            F 
Sbjct: 704  LVTLLTPEQLLKAGVKVYAIDQRAGEFVITFPEAYHAGFNHGFNLNEAVNFAPSDWEPFG 763

Query: 112  RNFYDSYRWSWDNGNSRWDLLDVMRAIYA-FSPDGIQWPSRDDGATSFKLQDLALANGIE 170
             +     +          D L +  A     +    +W          +   L      +
Sbjct: 764  EHGVQRLQDYRRQPCFSHDELLLAAASRKDTTIKTAKWLGPAMERMRDRELRLRSDFLDK 823

Query: 171  HV--NAH----DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
            H   NAH    D   D   T  L +++ +      E +  +            +N     
Sbjct: 824  HKAVNAHKCKIDGSGDGDVTCELEFIVDDADMHEDELMCAFCKSYGYLSRFYCRNAK--- 880

Query: 225  HVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAK------RLF 278
             V  +  A           A       S               L    + K       L 
Sbjct: 881  KVLCLQHAGSFECCPDTSEADRYSGAKSQHMLVYRMPEDDLTSLAQRIIDKAGTPEVWLS 940

Query: 279  TSHDELKGLVPVPIKEVH--LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN 336
                 L       +K +   LN+   +      + +  +      ++C E        T 
Sbjct: 941  KMDAMLAEGPRPQLKTMRALLNEGEKI----DWELKGLQDLKDFVEKCQEVAEEAILYTT 996

Query: 337  LRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL 396
             + + +    +P           + +    + + + ++ I +   +     +L F    +
Sbjct: 997  RKQQARRKAERPGRGRPSKSA--IAEADEKEREYRNVENIQKLLNQAR---DLGFESPEI 1051

Query: 397  PELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGL 456
              L  R RA      +  + +          L    +E+   +L  L  E KG       
Sbjct: 1052 TTL--RERAE---SIVDFQTRARIA------LRDRPVEQSITRLDELLEEGKGFNVDLPE 1100

Query: 457  INALYEYLQWV 467
            + +L + +Q +
Sbjct: 1101 LESLEKVVQQL 1111


>gi|319653072|ref|ZP_08007175.1| hypothetical protein HMPREF1013_03790 [Bacillus sp. 2_A_57_CT2]
 gi|317395244|gb|EFV75979.1| hypothetical protein HMPREF1013_03790 [Bacillus sp. 2_A_57_CT2]
          Length = 309

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 53/217 (24%), Gaps = 27/217 (12%)

Query: 3   NHFVIYDYET----FGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEA 57
              + +D+E      G         +   V+V+    +        F +P  D    P  
Sbjct: 5   KQLIFFDFEMLCSKNGMLFEDMEAIRLGAVKVELETGKVTG--FDRFIRPQQDSPLSPFC 62

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFY 115
             +TGI+            +FS     F            Y+    D    +   +R+  
Sbjct: 63  KELTGISDSDLKTAD----DFSEVFKDFLFWVGGVKKARFYSWSTSDILRLKADAFRHNL 118

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                      +  D +      +          +      +    DL+          H
Sbjct: 119 PQ---------ATIDKITKRYVDFQAIFTKRASRTAASVEKALSFYDLSFI-----GEPH 164

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
               D Y TL +     E+  K    +       +  
Sbjct: 165 HPMYDAYNTLRIYQSFEEQNVKTDFIMLQQFIFQEAE 201


>gi|92115158|ref|YP_575086.1| hypothetical protein Csal_3043 [Chromohalobacter salexigens DSM
           3043]
 gi|91798248|gb|ABE60387.1| conserved hypothetical protein [Chromohalobacter salexigens DSM
           3043]
          Length = 165

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 20/130 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITGIT 64
           ++ D E  G       P +    R D       ST  F  +P  +    DP+A  + GI+
Sbjct: 4   ILLDIEASGFG-RGSYPIEVGLARAD------GSTCAFLIQPLEEWTHWDPKAELLHGIS 56

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCI------------IGYNNIRFDDYYSRNIFYR 112
             +  R+G    E +R ++   +                  + +++      +      R
Sbjct: 57  RGRLHREGHPVIEVARWLNDELASAGIAYSDSWGYDNTWLSLLFHHAGMLPRFRLEALRR 116

Query: 113 NFYDSYRWSW 122
              +S    W
Sbjct: 117 LLDESQLERW 126


>gi|325103277|ref|YP_004272931.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans
          DSM 12145]
 gi|324972125|gb|ADY51109.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans
          DSM 12145]
          Length = 181

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 12/91 (13%)

Query: 3  NHFVIYDYE-T-------FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
          +  +I D E T        G         +     +D Q  +I  +     KP    L  
Sbjct: 6  DKILIVDLEATCWEDKVPTGM---ESDIIEIGACLLDIQSGEISDSRGILVKPERSEL-S 61

Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQF 85
               +T IT Q      +   E    + + 
Sbjct: 62 KFCTSLTTITRQMLDEQAIPFKEACNILKKE 92


>gi|15927574|ref|NP_375107.1| ATP-dependent helicase [Staphylococcus aureus subsp. aureus N315]
 gi|29028621|ref|NP_803310.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12]
 gi|30043986|ref|NP_835521.1| probable ATP-dependent helicase [Staphylococcus phage phiN315]
 gi|87161004|ref|YP_494621.1| putative exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195288|ref|YP_500092.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|118725058|ref|YP_908794.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3]
 gi|151222134|ref|YP_001332956.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510224|ref|YP_001575883.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253315032|ref|ZP_04838245.1| putative exonuclease [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253729784|ref|ZP_04863949.1| DNA polymerase III epsilon subunit family exonuclease
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|258413674|ref|ZP_05681948.1| phage exonuclease [Staphylococcus aureus A9763]
 gi|258425109|ref|ZP_05687979.1| phage exonuclease [Staphylococcus aureus A9635]
 gi|258434316|ref|ZP_05688717.1| exonuclease family protein [Staphylococcus aureus A9299]
 gi|258447837|ref|ZP_05695972.1| phage exonuclease [Staphylococcus aureus A6224]
 gi|258452362|ref|ZP_05700372.1| ATP-dependent helicase [Staphylococcus aureus A5948]
 gi|282917349|ref|ZP_06325104.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282928799|ref|ZP_06336392.1| exodeoxyribonuclease [Staphylococcus aureus A10102]
 gi|283771164|ref|ZP_06344055.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|294849552|ref|ZP_06790294.1| exodeoxyribonuclease [Staphylococcus aureus A9754]
 gi|295428583|ref|ZP_06821210.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589943|ref|ZP_06948583.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|13701793|dbj|BAB43086.1| probable ATP-dependent helicase [Staphylococcus aureus subsp.
           aureus N315]
 gi|18920545|gb|AAL82285.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12]
 gi|87126978|gb|ABD21492.1| putative exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202846|gb|ABD30656.1| exonuclease family [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|104641823|gb|ABF73165.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3]
 gi|150374934|dbj|BAF68194.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160369033|gb|ABX30004.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726519|gb|EES95248.1| DNA polymerase III epsilon subunit family exonuclease
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257839627|gb|EEV64097.1| phage exonuclease [Staphylococcus aureus A9763]
 gi|257844692|gb|EEV68736.1| phage exonuclease [Staphylococcus aureus A9635]
 gi|257849264|gb|EEV73245.1| exonuclease family protein [Staphylococcus aureus A9299]
 gi|257858934|gb|EEV81802.1| phage exonuclease [Staphylococcus aureus A6224]
 gi|257859949|gb|EEV82787.1| ATP-dependent helicase [Staphylococcus aureus A5948]
 gi|269941473|emb|CBI49870.1| putative phage exonuclease [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282318976|gb|EFB49331.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282589534|gb|EFB94622.1| exodeoxyribonuclease [Staphylococcus aureus A10102]
 gi|283459758|gb|EFC06849.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|285817684|gb|ADC38171.1| Pol III-like ATP dependent helicase, phage associated
           [Staphylococcus phage phiN315]
 gi|294823689|gb|EFG40116.1| exodeoxyribonuclease [Staphylococcus aureus A9754]
 gi|295127565|gb|EFG57204.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577071|gb|EFH95785.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|312830370|emb|CBX35212.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315196784|gb|EFU27129.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320143661|gb|EFW35439.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329724440|gb|EGG60950.1| exonuclease [Staphylococcus aureus subsp. aureus 21189]
          Length = 310

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 76/230 (33%), Gaps = 30/230 (13%)

Query: 2   TNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
              +   + D+ET   +  ++ P + A   + +    ++    +   P + Y  + +   
Sbjct: 1   MKKYDIAVLDFET--MNEHMNSPCEVAVSLI-KDLSIVKVYSSYINPPNNRY--NLKNAK 55

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I  I P+  +       +  + I       +  +I  +N  FD    +N           
Sbjct: 56  IHKI-PEDVILKAPKYPDIYQEILYLLKESH--LIIAHNALFDISVLKNTNNYYDLPVPN 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
           + +       D +++ R+ +A               +SFKL++L     I+    H AK 
Sbjct: 113 FMY------VDSINIFRSFHAI--------------SSFKLENLCSLYDIDKEKLHSAKF 152

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
           DV A   ++  + +           +    Q  +     N    +  SG 
Sbjct: 153 DVLALSKMLISLAKNNQHYSVLKLIHYMPKQYIRFSKYSNSPTKLFDSGF 202


>gi|322696205|gb|EFY88001.1| RNA binding protein (Arp), putative [Metarhizium acridum CQMa 102]
          Length = 623

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 47/181 (25%), Gaps = 26/181 (14%)

Query: 3   NHFVIYDYETF----GRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           + +V+    T     G  V  D     +   + +D    +  + E    KP +     P 
Sbjct: 12  DRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANSLEEITHESVLVKPVN-TPITPL 70

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQF----FSVPNTCIIGYNNIRFDDYYSRNIFYR 112
              +T +T +     G    +   R   F     +  N   +      +D         R
Sbjct: 71  CTSLTTLTWEHVRNAG-TFRDAISRFDTFATDYLTSKNLDFVFVTLDAWDLRVQLPREAR 129

Query: 113 NF---YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
           +       Y       + R            +       P       S  L ++  A  +
Sbjct: 130 DKAVVLPPYLQHSRTFDLR----------TEYQRWQQHHPESLPFGPSM-LSNICAALEV 178

Query: 170 E 170
           +
Sbjct: 179 D 179


>gi|213692662|ref|YP_002323248.1| hypothetical protein Blon_1795 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524123|gb|ACJ52870.1| hypothetical protein Blon_1795 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458813|dbj|BAJ69434.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 189

 Score = 42.1 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 38/171 (22%), Gaps = 11/171 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
           T   +  D ET G D   D   +          +       +        LP   +    
Sbjct: 5   TEALLWVDIETTGTDPRHDLMLEIGLRCTSMDAKT--EYARYESVIKPGVLPTDRSFAYA 62

Query: 61  ------TGITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  G+  +           A  +  +  F        + +        +       
Sbjct: 63  HRMHEENGLIDEVIDASPELCSTARVALAVIDFTQSMAETHVLHPAGTNMMGFDLPFLEH 122

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
             +   +W   +    +  LD+       +  G           S ++ D 
Sbjct: 123 YLFTEDQWGRFHRLLSYRALDMTAIRLTQTALGADPYEHYTQTKSHRVTDC 173


>gi|83949846|ref|ZP_00958579.1| magnesium transporter [Roseovarius nubinhibens ISM]
 gi|83837745|gb|EAP77041.1| magnesium transporter [Roseovarius nubinhibens ISM]
          Length = 463

 Score = 42.1 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 18/100 (18%)

Query: 372 IMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK----M 427
            M+ +       L      F  RRL EL        + +    +   +  E  ++    +
Sbjct: 44  EMEPLHAADIADLLEQLNAFDRRRLIEL--------YSNEFDGEILSELDESIREDVLSI 95

Query: 428 LTRSRIEEYKNKLQ-----SLSGEYKGDEGKEGLINALYE 462
           L+   + E   +L       L  + + D+ +E ++ AL +
Sbjct: 96  LSPEVLAEAVRELDSDDVVDLVEDLEEDQ-QEAILEALED 134


>gi|76658909|ref|XP_871009.1| PREDICTED: three prime repair exonuclease 2-like [Bos taurus]
          Length = 189

 Score = 42.1 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 16/128 (12%)

Query: 3   NHFVIYDYETFGR---DVALDRPAQFAG-------VRVDRQWEKIESTEVFFCKP--ADD 50
             FV  D E  G    D      + FA        ++ D     +    +       + +
Sbjct: 35  ETFVFLDLEAIGLPSVDPENAELSLFAVHQSSLEDLKCDESGAPLPPWVMDKLTLCMSPE 94

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAE--FSRRIHQFFSV--PNTCIIGYNNIRFDDYYS 106
                +A  ITG++ +   R G    +    + +  F S      C++ +N   +D    
Sbjct: 95  RPFTAKASEITGLSREGLGRCGKAGFDGTVVQMLQAFLSRQEGPVCLVAHNGFDYDFPLL 154

Query: 107 RNIFYRNF 114
                   
Sbjct: 155 CTELRHLG 162


>gi|302911266|ref|XP_003050455.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731392|gb|EEU44742.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 627

 Score = 42.1 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 48/181 (26%), Gaps = 26/181 (14%)

Query: 3   NHFVIYDYETF----GRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
           + +V+    T     G  V  D     +   + +D    +  + E    KP +     P 
Sbjct: 12  DRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANSLEEITHESVLVKPVN-TPITPL 70

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIH----QFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
              +T +T +     G    +   R      ++ +  N   +      +D         R
Sbjct: 71  CTSLTTLTWEHVRNAG-TFRDAITRFDTFATEYLTSKNLDFVFVTLDAWDLRVQLPREAR 129

Query: 113 NF---YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
           +       Y       + R            +       P       S  L ++  A  +
Sbjct: 130 DKAVVLPPYLQHSRTFDLR----------TEYQRWQQHHPESLPFGPSM-LSNICAALEV 178

Query: 170 E 170
           E
Sbjct: 179 E 179


>gi|111026133|ref|YP_708416.1| exonuclease [Rhodococcus jostii RHA1]
 gi|110824976|gb|ABH00258.1| possible exonuclease [Rhodococcus jostii RHA1]
          Length = 190

 Score = 42.1 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 10/68 (14%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGIT 64
          V+ D E+   D       +   V      + +              +P  P+A  + GI 
Sbjct: 22 VVLDVESTNLD---GSIIEI-CVLDAATGDPL-----LDTLVDPGEVPIHPDAYAVHGIA 72

Query: 65 PQKALRDG 72
          P   +   
Sbjct: 73 PADLIGAP 80


>gi|261193992|ref|XP_002623401.1| RNA exonuclease Rex2 [Ajellomyces dermatitidis SLH14081]
 gi|239588415|gb|EEQ71058.1| RNA exonuclease Rex2 [Ajellomyces dermatitidis SLH14081]
 gi|239607020|gb|EEQ84007.1| RNA exonuclease Rex2 [Ajellomyces dermatitidis ER-3]
 gi|327354510|gb|EGE83367.1| RNA exonuclease Rex2 [Ajellomyces dermatitidis ATCC 18188]
          Length = 173

 Score = 42.1 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 28/121 (23%), Gaps = 17/121 (14%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKP-------ADDYLPDPEAVFITGI 63
            G D   D+  Q      D     ++    E     P        D  +       +T  
Sbjct: 2   TGLDPRTDKILQICCFITDADLNLLDHTGFEAVIHHPKSVLDNMNDWCIDTHGRSGLT-- 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
                          +  +  +         T ++  N++  D  +     Y    +   
Sbjct: 60  --AAVAASKTTPTAAAEGLLAYIKKHVPQKRTGLLAGNSVHADKAFLACEPYAMVLEWLH 117

Query: 120 W 120
           +
Sbjct: 118 Y 118


>gi|225681728|gb|EEH20012.1| phosphoglucomutase [Paracoccidioides brasiliensis Pb03]
          Length = 791

 Score = 42.1 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 63/266 (23%), Gaps = 39/266 (14%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKP-------ADDYLPDPEAVFITGI 63
            G D   D+  Q      D   + +E    E     P        D  +         G 
Sbjct: 41  TGLDPRTDKIIQICCFITDSNLDLVEPNGFEAVIHYPKSVLDNMNDWCI------KTHGR 94

Query: 64  T--PQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIFYRNFYDS 117
           T      L         +  +  +           ++  N+++ D  +     Y +  + 
Sbjct: 95  TGLTAAVLSSTTTPTAAAEGLLAYIKKHVPQKRIGLLAGNSVQTDRAFLACEPYADVLEW 154

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
             +         D+  +  A   +  + +   +   G      +D+  +        H  
Sbjct: 155 LHY------RLLDVSSIKEAFRRWGNEKMLRDAPRKGFVHLAKEDILDSIEEMRYYRHPE 208

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
             +V             +      ++    K          ++TP           R   
Sbjct: 209 IQNVTILSKESPPQPSARGHCTAKIFKMNAKTV--------SITPFTDQKAGTSGLRKKV 260

Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMR 263
            +       P Y +S I   L     
Sbjct: 261 TVF----QQPNYSESFITSILLSIPE 282


>gi|49484243|ref|YP_041467.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242372|emb|CAG41084.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 310

 Score = 42.1 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 76/230 (33%), Gaps = 30/230 (13%)

Query: 2   TNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
              +   + D+ET   +  ++ P + A   + +    ++    +   P + Y  + +   
Sbjct: 1   MKKYDIAVLDFET--MNEHMNSPCEVAVSLI-KDLSIVKVYSSYINPPNNRY--NLKNAK 55

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I  I P+  +       +  + I       +  +I  +N  FD    +N           
Sbjct: 56  IHKI-PEDVILKAPKYPDIYQEILYLLKESH--LIIAHNALFDISVLKNTNNYYDLPVPN 112

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
           + +       D +++ R+ +A               +SFKL++L     I+    H AK 
Sbjct: 113 FMY------VDSINIFRSFHAI--------------SSFKLENLCSLYDIDKEKLHSAKF 152

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
           DV A   ++  + +           +    Q  +     N    +  SG 
Sbjct: 153 DVLALSKMLISLAKNNKHYSVLKLIHYMPKQYIRFSKYSNSPTKLFDSGF 202


>gi|71407241|ref|XP_806103.1| exonuclease [Trypanosoma cruzi strain CL Brener]
 gi|70869745|gb|EAN84252.1| exonuclease, putative [Trypanosoma cruzi]
          Length = 289

 Score = 42.1 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 47/196 (23%), Gaps = 33/196 (16%)

Query: 21  RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
              +F  V VD  +   +      + +P  +         +TGIT  +         E  
Sbjct: 24  EIIEFPVVCVDTAELRVVAEFHS-YVRPTKNPRLTSFCTALTGITQAQVDAAPR-LPEVL 81

Query: 80  RRIH----------------QFFSVPNTCI-----------IGYNNIRFDDYYSRNIFYR 112
           R                   +     N C+             +N    D      +   
Sbjct: 82  RHFDLWLREVVYPLCRRWRKEHLEGLNKCLKASQKRRFVYDETHNPGWIDCERMICMVTD 141

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-H 171
             +D     +    S      +   ++    +     +        KL D+    G+  H
Sbjct: 142 GPWDM--RKFMYECSVVRDGHLFPPLFYRWVNVRHSFAEHFRMRPRKLNDMLRKLGLSFH 199

Query: 172 VNAHDAKADVYATLAL 187
            + H    D      +
Sbjct: 200 GHPHSGIDDSRNIARI 215


>gi|170587529|ref|XP_001898528.1| Smfn protein [Brugia malayi]
 gi|158594003|gb|EDP32594.1| Smfn protein, putative [Brugia malayi]
          Length = 184

 Score = 42.1 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 7/111 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL----PDPEAVFI 60
            V  D E  G DV+     + A    +     +E           + L       +A F 
Sbjct: 10  IVWVDCEMTGLDVSSKTIVEIACAITEADLMVVEEGLNLVISQPKEVLEGMDNWCKATFA 69

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRN 108
           +    Q+ L   +   E    I ++         C +G N++  D  + + 
Sbjct: 70  SNGLLQEILSSKITMKEAENEILKYVRQHTDSGMCPLGGNSVGSDRIFLQK 120


>gi|115650166|ref|XP_781221.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 210

 Score = 42.1 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 5   FVIYDYETFGRDVALDRP---AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           F++ D+E    D     P    +F  ++V  +  + E+T   + +P    +       +T
Sbjct: 79  FLVLDFEATCLDNERIEPQEVIEFPVLKVSGKTFETEATFHQYVEPQVHGV-GEFCTRLT 137

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPN 90
           GITP          A+  +  H +     
Sbjct: 138 GITPDMVKGQP-TFADTLKLFHVWMEKEG 165


>gi|257125974|ref|YP_003164088.1| exonuclease RNase T and DNA polymerase III [Leptotrichia buccalis
           C-1013-b]
 gi|257049913|gb|ACV39097.1| Exonuclease RNase T and DNA polymerase III [Leptotrichia buccalis
           C-1013-b]
          Length = 212

 Score = 42.1 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 50/224 (22%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE----------STEVFFCKPADDYL 52
            + + +D ET G           + ++V+   E                 F+ +  +   
Sbjct: 9   KNIIFFDVETNGF--QGSSVLSMSAIKVNYNSENTGEEKNKWKKVSEFNRFYFR-NEGEE 65

Query: 53  PDPEAVFITGITPQKALRD------------GVVEAEFSRRIHQFFSVPNTCIIGYNNIR 100
            +  AV + G+T    L +             +   E       F    +T     +NI+
Sbjct: 66  LNEGAVSVNGLTDDVILSERKSIIQNTGIEYPLTFKEDMDNF--FLFCQDTSHFVAHNIK 123

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           FD         R+F D    +  +       +D+++   +   +  +WP         KL
Sbjct: 124 FD---------RSFVDFPLQNQFDTM--LTNIDIVKVNGSSYGN-YKWP---------KL 162

Query: 161 QDLALANGIEHVNA--HDAKADVYATLALVWLIREKKPKLFEYL 202
            + A    I    +  H +  DV     + + + + K      L
Sbjct: 163 MECANYYNIPFEESQLHGSYYDVLIMFRIFFKMMKHKTGNKRIL 206


>gi|239793055|dbj|BAH72791.1| ACYPI010006 [Acyrthosiphon pisum]
          Length = 340

 Score = 42.1 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 5   FVIYDYETFGR-----DVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
           FV+ D E         D       +F  V VD ++ + I+  + F  KP+ +       +
Sbjct: 95  FVVIDIEATCTENNPADYKF-EIIEFPAVLVDAKKRKIIDHFQAF-VKPSINPKLSEFCI 152

Query: 59  FITGITPQKALRDGVVE 75
            +TGIT  +       E
Sbjct: 153 KLTGITQDQIDNADSFE 169


>gi|313221865|emb|CBY38931.1| unnamed protein product [Oikopleura dioica]
          Length = 196

 Score = 42.1 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 6/125 (4%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--V 58
            +     D E  G DV   D   + A V  D +   +          ++  L    A   
Sbjct: 7   PDRIFWLDAEMTGLDVLGHDTLMELACVVTDGELNVVVEGPELVFGVSNRQLKRMGAWCR 66

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
              G +   +K     +   +    + +F         +  N++  D  +      ++  
Sbjct: 67  KTHGESGLTKKCRESHLTLEDGDEILSEFIRKHCPKAPLAGNSVHADRQFMCKELPKSVK 126

Query: 116 DSYRW 120
           + +  
Sbjct: 127 ELHYR 131


>gi|255942429|ref|XP_002561983.1| Pc18g01380 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586716|emb|CAP94362.1| Pc18g01380 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 245

 Score = 42.1 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 9/117 (7%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFITGIT--PQK 67
            G +   D+  Q      D Q   +E T         D   D  +   +   G T     
Sbjct: 76  TGLNPETDKILQICCFITDAQLNLLEPTGFETVIHVPDSTLDAMSQWCIDTHGRTGLTAA 135

Query: 68  ALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
                   +  +  +  +       P T ++  N++  D  +     Y    D   +
Sbjct: 136 VRASTTSPSTAADSLLAYIRQHVPTPRTALLAGNSVHADKAFLACAPYSQVLDHLHY 192


>gi|147900544|ref|NP_001089554.1| exoribonuclease 1 [Xenopus laevis]
 gi|67678439|gb|AAH97876.1| Thex1 protein [Xenopus laevis]
          Length = 348

 Score = 41.7 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 13/170 (7%)

Query: 5   FVIYDYETF---GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             + D+E     G  +       +F  V ++    +IE     + +P  +       V +
Sbjct: 129 ICVIDFEATCEAGNSLDYPHEIIEFPIVLLNTHTLEIEDVFQCYVRPEINPQLSEFCVNL 188

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRN 113
           TGIT     +         R + ++              +   +         +    R 
Sbjct: 189 TGITQDTVDKSD-TFPNVLRSVVEWMREKELGSKYKYAILTDGSWDMSKFLNMQCRISRL 247

Query: 114 FYDSYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
            Y  +   W N    + +   V R     +    +     +G     L D
Sbjct: 248 KYPRFAKKWINIRKSYGNFYKVPRTQTKLTTMLEKLGMTYNGRLHSGLDD 297


>gi|332140274|ref|YP_004426012.1| hypothetical protein MADE_1004330 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550296|gb|AEA97014.1| hypothetical protein MADE_1004330 [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 167

 Score = 41.7 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 32/134 (23%), Gaps = 7/134 (5%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            I D E  G   A   P +   VR D                A     D  A  + GI+ 
Sbjct: 8   TIIDVEASGFGAA-SYPIEIGIVRYDG-----AKWCKLLRPYASWVHWDKSAESLHGISQ 61

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR-FDDYYSRNIFYRNFYDSYRWSWDN 124
           Q     G         ++ F         G+     +             +      +  
Sbjct: 62  QMLESRGEEPYTVCMELNNFLGNTIAYSDGWVVDNPWLIKLYAAAQVEMSFTCRALEYIL 121

Query: 125 GNSRWDLLDVMRAI 138
             ++ D    ++  
Sbjct: 122 TEAQMDKWHEVKDR 135


>gi|196009752|ref|XP_002114741.1| hypothetical protein TRIADDRAFT_28382 [Trichoplax adhaerens]
 gi|190582803|gb|EDV22875.1| hypothetical protein TRIADDRAFT_28382 [Trichoplax adhaerens]
          Length = 276

 Score = 41.7 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 57/199 (28%), Gaps = 26/199 (13%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           + + D+E                +F  + V+ +   +ES   F+C+P  +         +
Sbjct: 81  YCVIDFEATCEEVNPRKYKHEIIEFPALMVNARTLAVESQFHFYCRPVMNPKLSSFCTKL 140

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           TGI  QK +          +   ++       +T ++  +       +       +    
Sbjct: 141 TGI-DQKTIDSADAFKVVFQNFQKWLEDVLGESTFVVVTDGPFDITRFLTIQCKVDKIPM 199

Query: 118 YRW--SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
             W  +W N    +           +   G ++P+  D   + K+              H
Sbjct: 200 PYWASNWTNLKRTF--------KAFYKLSGQRFPTLQDMLGALKIPH--------DGRLH 243

Query: 176 DAKADVYATLALVWLIREK 194
               D      ++  +   
Sbjct: 244 SGIDDAKNIAKILCQLIRD 262


>gi|23466268|ref|NP_696871.1| oligoribonuclease [Bifidobacterium longum NCC2705]
 gi|239621653|ref|ZP_04664684.1| oligoribonuclease [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312134015|ref|YP_004001354.1| orn2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482068|ref|ZP_07941092.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689780|ref|YP_004209514.1| oligoribonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|81753494|sp|Q8G3N5|ORN_BIFLO RecName: Full=Oligoribonuclease
 gi|23327017|gb|AAN25507.1| probable oligoribonuclease [Bifidobacterium longum NCC2705]
 gi|239515528|gb|EEQ55395.1| oligoribonuclease [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291516316|emb|CBK69932.1| Oligoribonuclease (3'->5' exoribonuclease) [Bifidobacterium longum
           subsp. longum F8]
 gi|311773320|gb|ADQ02808.1| Orn2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916427|gb|EFV37825.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320461116|dbj|BAJ71736.1| oligoribonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 60/208 (28%), Gaps = 31/208 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +  D E  G D+   D   + + V  D     ++    +  KP++          +  +
Sbjct: 17  LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEK--------AVNHM 68

Query: 64  TP---QKALRDGVV------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                Q   R G++            E + +  + +F       ++  N I  D  +  +
Sbjct: 69  NDFVRQMHTRSGLINEWENGLSLAEAEQKVTEYVLRFTPEGVRPLLAGNTIGSDKKFLDH 128

Query: 109 IFYRNFYDSYRW-----SWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
                    +       ++     RW   + +                   D    ++  
Sbjct: 129 YMPNLMSHLHYRSVDVSTFKELARRWYPAVYENRPPKNGGHRALADIIESLDELRYYRKA 188

Query: 162 DLALANGIEHVNAHDAKADVYATLALVW 189
            +A A G +   +    AD+ AT  L  
Sbjct: 189 FMAPAPGPDDAASKAIAADIVATSILNK 216


>gi|209695329|ref|YP_002263258.1| ribonuclease T [Aliivibrio salmonicida LFI1238]
 gi|208009281|emb|CAQ79547.1| ribonuclease T [Aliivibrio salmonicida LFI1238]
          Length = 221

 Score = 41.7 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 52/201 (25%), Gaps = 31/201 (15%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   D   +   V +    E          F   P +    + EA+   G
Sbjct: 20  VVIDVETAGFNSKTDALLEICAVTLAMDDEGYLKPATTIHFHVTPFEGANLEQEALDFIG 79

Query: 63  I-TPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           I  P   LR  V E    + I +              I+  +N  FD  +      R   
Sbjct: 80  IRDPFSPLRGAVTEDVALKEIFKLIRKEQKQHDCRRAIMVAHNANFDHSFVMEAAERTKL 139

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--N 173
                        +   D            +             L       G++     
Sbjct: 140 K------RIPFHPFCTFDTAAISGLALGQTV-------------LAKACKTAGMDFDGKE 180

Query: 174 AHDAKADVYATLALVWLIREK 194
           AH A  D   T  L   I  K
Sbjct: 181 AHSALYDTEKTAELFCHIVNK 201


>gi|310287864|ref|YP_003939122.1| Oligoribonuclease [Bifidobacterium bifidum S17]
 gi|309251800|gb|ADO53548.1| Oligoribonuclease [Bifidobacterium bifidum S17]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 20/131 (15%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEAVF 59
            +  D E  G D+   D   + + V  D     ++    +  KP+D  +        A+ 
Sbjct: 17  LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSDAAVAHMNDFVRAMH 76

Query: 60  I---------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
                      G++ ++A R        +  + +F       ++  N I  D  +  +  
Sbjct: 77  TRSGLINEWEHGLSLEEAERK------VTEYVLRFTPDGVRPLLAGNTIGSDKKFLDHYM 130

Query: 111 YRNFYDSYRWS 121
                  +  S
Sbjct: 131 PGLMSHLHYRS 141


>gi|328476755|gb|EGF47174.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus MTCC
           5462]
          Length = 356

 Score = 41.7 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 5   FVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +V+ D E        ++    + + +RV +   +I+ T   F +    +   P +V ITG
Sbjct: 275 YVVIDTE---FVADRNQLDLTEISLLRVRQH--QIDQTFDIFTQLPAGHHVMPFSVKITG 329

Query: 63  ITPQKALR 70
           IT      
Sbjct: 330 ITDDLLEN 337


>gi|328699519|ref|XP_001952800.2| PREDICTED: hypothetical protein LOC100160807 isoform 1
           [Acyrthosiphon pisum]
          Length = 901

 Score = 41.7 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 62/467 (13%), Positives = 108/467 (23%), Gaps = 75/467 (16%)

Query: 18  ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDG--VVE 75
             D P Q A V  D       S +V + +  DD             T  +  R    + E
Sbjct: 37  DNDDP-QIALVTADPTNVSAHSPDVIYIRLRDDSP-----------TDDRCRRRSRMLSE 84

Query: 76  AEFS---RRIHQFFSVPNTCIIGYNNIRFDD---YYSRNIFYRNFYDSYR---------- 119
            E        H    +PN   +  +  R          N       D             
Sbjct: 85  GEVVLLESVAHHSKRLPNGRFLTMHKRRRKKLTTRSLSNENAPALLDDIHHGQVQCVLKH 144

Query: 120 -WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-----SFKLQDLALANGIEHVN 173
            W W       D     R++         W    +         +KL  L          
Sbjct: 145 VWKWPFNAFALDTATGGRSLPVLCVHLFHWYGLMEHFKLDVVQVWKLFSLIEEGYHSTNP 204

Query: 174 AHDAK--ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMF 230
            H+A    DV   +       + K  L            +   L       P +  +   
Sbjct: 205 YHNAIHATDVTQAMHCFLQEDKIKNFLTPLEIMASLIAAVAHDLDHPGVNQPFLIATSNH 264

Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290
            A+      +        +  S IGC L   +          L  ++ +S      +   
Sbjct: 265 LATLYENTSVL----ENHHWRSAIGCLLESHVAEKLSPIRQDLESQI-SSLILATDITRQ 319

Query: 291 PIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT 350
           P      N       +D    E          +C +     R     R     + ++ + 
Sbjct: 320 PEFLKKFNNYLENDELDMKDPELRHFILQIALKCADISNPCRPWDVSRKWSLKVCDEFFR 379

Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
               +    L      D     + +I                       FF++       
Sbjct: 380 QGDYERQLGLPVTDICDRYNNTVPKIQTV--------------------FFKFM------ 413

Query: 411 TLSEKEKQDWLEHRKKMLTR---SRIEEYKNKLQSLSGEYKGDEGKE 454
            L       W +     L+      + + + + + L      DE + 
Sbjct: 414 VLP--LFNLWHKFLDTKLSHSMMENLRKNQQQWEELRERESSDEQQL 458


>gi|226372150|gb|ACO51700.1| Histone mRNA 3-exonuclease 1 [Rana catesbeiana]
          Length = 348

 Score = 41.7 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 55/195 (28%), Gaps = 17/195 (8%)

Query: 5   FVIYDYETF--GRDV--ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
             I D+E    G +    +    +F  V ++ +  +IE T   + KP          + +
Sbjct: 129 ICIIDFEATCEGGNATDYVHEIIEFPIVLLNTRTLEIEDTFQRYVKPEIKPQLSEFCINL 188

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGIT Q  +          + +  +             I  D  +  + F        R 
Sbjct: 189 TGIT-QDIIDQADTFPVVLQSVVDWMRQKELGTKYKYAILTDGSWDMSKFLNMQCRVSRI 247

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKA 179
            +     +W        I     +  + P         KL  +    G+ +    H    
Sbjct: 248 KYPRFAKKW------INIRKCYGNFYKVPRNQT-----KLTVMLEKLGMSYIGRLHSGLD 296

Query: 180 DVYATLALVWLIREK 194
           D      +   + + 
Sbjct: 297 DSKNIARIAIHMLQD 311


>gi|166998659|ref|NP_001107798.1| Snipper [Tribolium castaneum]
 gi|156447793|gb|ABU63675.1| Snipper [Tribolium castaneum]
          Length = 232

 Score = 41.7 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 19/198 (9%)

Query: 5   FVIYDYETF---GRDVALD--RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
            ++ D+E       D   +     +F  V  D +  + I   +  +  P ++        
Sbjct: 31  LLVLDFEATCWSNGDPRKNPAEIIEFPVVLYDVKNAKIIAEFQQ-YVMPVENPKLSDFCT 89

Query: 59  FITGITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +TGI   +   +GV        FSR + +  S+ +       +              + 
Sbjct: 90  ELTGIQQHQV-DNGVPLQACLLLFSRWVAEKMSLYDMDFPNGESQATKTCAFATWSDWDL 148

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
               R      N R + +      Y    D      R        L       G+     
Sbjct: 149 GTCLRKECIRKNIRIEKM------YRKWIDIRALFKRYIRRPFIGLAGALAELGLTFEGT 202

Query: 175 -HDAKADVYATLALVWLI 191
            H    D   T  LV  +
Sbjct: 203 EHCGLHDARNTARLVGKM 220


>gi|86156636|ref|YP_463421.1| hypothetical protein Adeh_0207 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773147|gb|ABC79984.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 172

 Score = 41.7 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 11/161 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + +V+ D E  G          F  VRV+    +    E    +P  D    PEA+ I+
Sbjct: 1   MSAYVV-DVEADGPIPGKYSMVSFGAVRVEPGLSRTFRGE---VRPISDLWL-PEALAIS 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           G+T ++ LR G    E      ++         ++  +N+ FD  Y    F+     +  
Sbjct: 56  GVTREQHLRFGEP-GEVMADFERWIQETTRGKPVLFSDNLSFDWQYVNWYFHTYLGRNPF 114

Query: 120 WSWDNGNSRWDLLD-VMRAIYAFSPDGIQWPSRDDGATSFK 159
               +G    DL   +++  +A            D     K
Sbjct: 115 GW--SGRRIGDLYCGMVKDGHAQWKHLRATAHDHDPVNDAK 153


>gi|330983635|gb|EGH81738.1| hypothetical protein PLA107_01295 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 177

 Score = 41.7 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 50/190 (26%), Gaps = 32/190 (16%)

Query: 4   HFVIYDYE------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
               +D E      T      +     F    +D +  KI      + KP  D +     
Sbjct: 7   KITCFDLEMCCWEDT----RQIGEIISFGLCELDLKTGKITREAHHYVKPVTDTV-SEFC 61

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
             +TGIT +   R G   +E    I   F      +    +  +    +R   +      
Sbjct: 62  TQLTGITQRTVNRQGRPLSEVVNSITAKFGTKRPYVCWGEDGDYLARMARRQNFF----- 116

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                        + +++    A      +    +       +    L       NAH+A
Sbjct: 117 -------------IPNMVFLNAALLYQLRKRHVGESIGLKRAMASEDLEF---EGNAHNA 160

Query: 178 KADVYATLAL 187
             D      L
Sbjct: 161 LNDSRNMARL 170


>gi|213691488|ref|YP_002322074.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|213522949|gb|ACJ51696.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium
          longum subsp. infantis ATCC 15697]
 gi|320457562|dbj|BAJ68183.1| oligoribonuclease [Bifidobacterium longum subsp. infantis ATCC
          15697]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 5  FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKP 47
           +  D E  G D+   D   + + V  D     ++    F  KP
Sbjct: 17 LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDFVIKP 60


>gi|307177507|gb|EFN66618.1| Probable oligoribonuclease [Camponotus floridanus]
          Length = 201

 Score = 41.7 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 4/121 (3%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            H V  D E  G +V      + A +  D Q + +           D  L +      +G
Sbjct: 28  KHIVWLDMEMTGLEVEQCHILELACLITDEQLKPVSDCLNIIIHQTDQVLENMSNWCKSG 87

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +         V   E  +++ Q+         C +  N+I  D  + R          + 
Sbjct: 88  LIND-CRSSKVTLEEAQQKMLQYLQSHVPRGMCPLAGNSIYMDRIFLRKYMPLIDNYLHY 146

Query: 120 W 120
            
Sbjct: 147 R 147


>gi|291457349|ref|ZP_06596739.1| oligoribonuclease [Bifidobacterium breve DSM 20213]
 gi|291381184|gb|EFE88702.1| oligoribonuclease [Bifidobacterium breve DSM 20213]
          Length = 225

 Score = 41.7 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 56/208 (26%), Gaps = 31/208 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +  D E  G D+   D   + + V  D     ++    +  KP++          +  +
Sbjct: 26  LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEK--------AVNHM 77

Query: 64  TP---QKALRDGVV------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                Q   R G++            E + +  + +F       ++  N I  D  +  +
Sbjct: 78  NDFVRQMHTRSGLINEWENGLSLAEAEQKVTEYVLRFTPEGVRPLLAGNTIGSDKKFLDH 137

Query: 109 IFYRNFYDSYRWS---WDNGNSRWDLLDVMRAIYA----FSPDGIQWPSRDDGATSFKLQ 161
                    +  S                +                     D    ++  
Sbjct: 138 YMPDLMSHLHYRSVDVSTLKELARRWYPAVYENRPPKNGGHRALADIIESLDELRYYRKA 197

Query: 162 DLALANGIEHVNAHDAKADVYATLALVW 189
            +A A G +   A    AD+ +T  L  
Sbjct: 198 FMAPAPGPDEAAAKAISADIVSTSILNK 225


>gi|189499454|ref|YP_001958924.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
           phaeobacteroides BS1]
 gi|189494895|gb|ACE03443.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
           phaeobacteroides BS1]
          Length = 159

 Score = 41.7 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 40/138 (28%), Gaps = 25/138 (18%)

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           IT +        E E       F +  N   I  +N  FD  +  +   R          
Sbjct: 8   ITNEMLKDKPCCE-EVMLEFSGFIADHN---IVAHNASFDRRFLDSELKRANR------- 56

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADV 181
               S    L + R +Y               + +  LQ L    G  E    H A AD 
Sbjct: 57  KYEGSCCCSLLLSRRVY-------------QDSPNHTLQTLVSHAGIPETGTFHRALADA 103

Query: 182 YATLALVWLIREKKPKLF 199
             T  L   + ++  + +
Sbjct: 104 EMTAYLWLSMIDRIRRQY 121


>gi|88799304|ref|ZP_01114882.1| hypothetical protein MED297_16898 [Reinekea sp. MED297]
 gi|88777843|gb|EAR09040.1| hypothetical protein MED297_16898 [Reinekea sp. MED297]
          Length = 157

 Score = 41.7 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITGIT 64
          VI D E  G       P +   V  D        +  +  +P  D     P+A  + GI 
Sbjct: 9  VIIDIEASGFGKG-SYPIEIG-VATDN-----GESRNWLIRPEDDWTHWQPDAEKLHGIQ 61

Query: 65 PQKALRDGVVEAEFSRRIHQFFS 87
           +  + +G+     +  +++ F 
Sbjct: 62 RETLIEEGLSPRFVASALNELFE 84


>gi|224283874|ref|ZP_03647196.1| oligoribonuclease [Bifidobacterium bifidum NCIMB 41171]
 gi|311064744|ref|YP_003971469.1| oligoribonuclease Orn [Bifidobacterium bifidum PRL2010]
 gi|313141028|ref|ZP_07803221.1| oligoribonuclease [Bifidobacterium bifidum NCIMB 41171]
 gi|310867063|gb|ADP36432.1| Orn Oligoribonuclease [Bifidobacterium bifidum PRL2010]
 gi|313133538|gb|EFR51155.1| oligoribonuclease [Bifidobacterium bifidum NCIMB 41171]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 20/131 (15%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----PEAVF 59
            +  D E  G D+   D   + + V  D     ++    +  KP+D  +        A+ 
Sbjct: 17  LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSDAAVAHMNDFVRAMH 76

Query: 60  I---------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
                      G++ ++A R        +  + +F       ++  N I  D  +  +  
Sbjct: 77  TRSGLINEWEHGLSLEEAERK------VTEYVLRFTPDGVRPLLAGNTIGSDKKFLDHYM 130

Query: 111 YRNFYDSYRWS 121
                  +  S
Sbjct: 131 PGLMSHLHYRS 141


>gi|270002199|gb|EEZ98646.1| hypothetical protein TcasGA2_TC001174 [Tribolium castaneum]
          Length = 232

 Score = 41.7 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 53/198 (26%), Gaps = 19/198 (9%)

Query: 5   FVIYDYETF---GRDVALD--RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAV 58
            ++ D+E       D   +     +F  V  D +  + I   +  +  P ++        
Sbjct: 31  LLVLDFEATCWSNGDPRKNPAEIIEFPVVLYDVKNAKIIAEFQQ-YVMPVENPKLSDFCT 89

Query: 59  FITGITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
            +TGI   +   +GV        FSR + +   + +       +              + 
Sbjct: 90  ELTGIQQHQV-DNGVPLQACLLLFSRWVAEKMRLYDMDFPNGESQAAKTCAFATWSDWDL 148

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
               R      N R + +      Y    D      R        L       G+     
Sbjct: 149 GTCLRKECIRKNIRIEKM------YRKWIDIRALFKRYIRRPFIGLSGALAELGLTFEGT 202

Query: 175 -HDAKADVYATLALVWLI 191
            H    D   T  LV  +
Sbjct: 203 EHCGLHDARNTARLVGKM 220


>gi|168010065|ref|XP_001757725.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691001|gb|EDQ77365.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 182

 Score = 41.7 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPAD 49
           V  D    G D+  DR  + A V  D + E+     ++   +P +
Sbjct: 3  LVWIDLVMSGLDIEKDRILEIACVVTDGRLERTFEGPDIIVSQPEE 48


>gi|297816266|ref|XP_002876016.1| At3g50100 [Arabidopsis lyrata subsp. lyrata]
 gi|297321854|gb|EFH52275.1| At3g50100 [Arabidopsis lyrata subsp. lyrata]
          Length = 409

 Score = 41.7 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 11/136 (8%)

Query: 29  RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV 88
            VDR  + I      +     D         ITGIT +      +  A+    +  F S 
Sbjct: 162 VVDRDLKVI-----LYEFVKPDKHIVDYRTDITGITAEDIENATLSVADIQETLQPFLST 216

Query: 89  PNTCIIGYNNIRFDDYYSR----NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPD 144
               I+  +++  D    +     +        Y  +        + L      Y     
Sbjct: 217 --GTILVGHSLNRDLEVLKIDHPKVIDTALVFRYSNTRKLRRPSLNNLCKSILGYEVRKT 274

Query: 145 GIQWPSRDDGATSFKL 160
           G+      D   + KL
Sbjct: 275 GVPHNCVHDAEAAMKL 290


>gi|255324350|ref|ZP_05365469.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
 gi|255298569|gb|EET77867.1| DNA polymerase III subunit epsilon [Corynebacterium
           tuberculostearicum SK141]
          Length = 432

 Score = 41.7 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 8/92 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V    +T G   +  R      +  +      E  ++F      D    P    + G++
Sbjct: 55  YVALTLQTTGIHPSTGRIVTIDAIAFNDAG---EQGQLFHAVLKPDIDAGPR--HLHGLS 109

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY 96
                +      +  + + +        +I +
Sbjct: 110 TTDIEQAPA-FGKILKSLDKLID--GRTLIVH 138


>gi|221194706|ref|ZP_03567763.1| DNA polymerase III [Atopobium rimae ATCC 49626]
 gi|221185610|gb|EEE18000.1| DNA polymerase III [Atopobium rimae ATCC 49626]
          Length = 323

 Score = 41.7 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 46/203 (22%), Gaps = 40/203 (19%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEA----- 57
             +  D ET  R                            F     + +P DP A     
Sbjct: 132 TILGIDIETTSRFPDQGYIINIGF---------------EFWNLGPETVPVDPHAAYFGM 176

Query: 58  -----------VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
                        I  IT Q      +  ++ + +     ++     + +N    D    
Sbjct: 177 PELYREKGVPLSEIHHITWQDLDGRPLFRSDKAAQKALLTAMKKVPFMAHNAAFED---- 232

Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
              ++    D Y  +   G  +   +D         P+          A+          
Sbjct: 233 --SWFMLHIDGYAEAHKEG--KIVPIDTREICRRLDPEFRSLLPASRPASLENWARRRGT 288

Query: 167 NGIEHVNAHDAKADVYATLALVW 189
                V  H    DV   +  V 
Sbjct: 289 LAAHEVEQHLGLDDVDLMIRTVQ 311


>gi|330802140|ref|XP_003289078.1| hypothetical protein DICPUDRAFT_153391 [Dictyostelium purpureum]
 gi|325080866|gb|EGC34404.1| hypothetical protein DICPUDRAFT_153391 [Dictyostelium purpureum]
          Length = 681

 Score = 41.7 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 58/168 (34%), Gaps = 20/168 (11%)

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           N  P+        K+  +          E   L+ +  +L+++     +K Y   +    
Sbjct: 337 NGKPVAPRDSLTNKDPTQLRDTIRTLQREREDLMNKNHDLQNKIIDSDSKLYNLDATLEK 396

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLN------------LPFSDRRLPELFFRYRA 405
            ++              +++R   +  S ++              FS+ R  ++  RY  
Sbjct: 397 LKIDLKTVTLERDTHKQKVVRLENQLKSEIDDLTRKLEESDAKFEFSNERYSQMLTRY-- 454

Query: 406 RNFPHTLSEKEKQDWLEHR----KKMLT-RSRIEEYKNKLQSLSGEYK 448
           +   +T+  + K  + +      ++ +  ++++E    K++ L    K
Sbjct: 455 QQSLNTMD-EMKNKFRDSIISQKQEYINIQNKLESANKKIEELESNLK 501


>gi|255567670|ref|XP_002524814.1| exonuclease, putative [Ricinus communis]
 gi|223535998|gb|EEF37657.1| exonuclease, putative [Ricinus communis]
          Length = 365

 Score = 41.7 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 43/178 (24%), Gaps = 23/178 (12%)

Query: 29  RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV 88
            VD     I     F                +TG+T +      +   E   +I +    
Sbjct: 166 LVDEDENII-----FHAYVQPQIPITDYRYEVTGLTEEHLRDA-MPLKEVQNKILEIL-- 217

Query: 89  PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW 148
                  YN              R           + +   D L +    +         
Sbjct: 218 -------YNGESVGKARLSGGKARLLVGH------SLDHDLDCLRMFYPDHLLRDTAKYR 264

Query: 149 PSRDDGATSFKLQDLALANGIEHVNA--HDAKADVYATLALVWLIREKKPKLFEYLYD 204
           P       S  L+ L       ++    HD   D  A + L   +R +  ++ +    
Sbjct: 265 PLMKTNLFSHSLKYLTQTYLGYNIQTGIHDPYEDCVAVMRLYKRMRGQDHEVEQSGLR 322


>gi|194855218|ref|XP_001968498.1| GG24904 [Drosophila erecta]
 gi|190660365|gb|EDV57557.1| GG24904 [Drosophila erecta]
          Length = 348

 Score = 41.7 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 26/128 (20%)

Query: 4   HFVIYDYETFGRDVALDR---PAQFAGVRVDRQW------------------EKIESTEV 42
            F + D ET       +      +      +                       +    +
Sbjct: 19  TFAVLDLETSNLPAYQNNRVGITELCIYAFEAALLKKEKKEQEEDQELPAAPRVLHKLNL 78

Query: 43  FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIR 100
            F          PEA  ITG++     R+  ++ + ++ I+ F     +  C++ +N   
Sbjct: 79  LF---QPSMKVYPEAERITGLSNYILERESKLDVDAAQLINGFLKHLPSPVCLVAHNGWG 135

Query: 101 FDDYYSRN 108
           FD    R 
Sbjct: 136 FDFPILRQ 143


>gi|171741065|ref|ZP_02916872.1| hypothetical protein BIFDEN_00131 [Bifidobacterium dentium ATCC
           27678]
 gi|283455552|ref|YP_003360116.1| orn Oligoribonuclease [Bifidobacterium dentium Bd1]
 gi|306823408|ref|ZP_07456783.1| oligoribonuclease [Bifidobacterium dentium ATCC 27679]
 gi|309802746|ref|ZP_07696850.1| oligoribonuclease [Bifidobacterium dentium JCVIHMP022]
 gi|171276679|gb|EDT44340.1| hypothetical protein BIFDEN_00131 [Bifidobacterium dentium ATCC
           27678]
 gi|283102186|gb|ADB09292.1| orn Oligoribonuclease [Bifidobacterium dentium Bd1]
 gi|304553115|gb|EFM41027.1| oligoribonuclease [Bifidobacterium dentium ATCC 27679]
 gi|308220810|gb|EFO77118.1| oligoribonuclease [Bifidobacterium dentium JCVIHMP022]
          Length = 217

 Score = 41.7 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 52/197 (26%), Gaps = 19/197 (9%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
            +  D E  G D+   D   + + V  D     ++    F  KP+   +   +     + 
Sbjct: 17  LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDFVIKPSQKAVDHMNDFVRNMH 76

Query: 62  ---GITPQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRN---IFY 111
              G+  +     G+   E   ++ ++           ++  N I  D  +  +      
Sbjct: 77  TRSGLIKE--WEHGLSLDEAQAKVVEYVKRFTPDGVKPLLAGNTIGSDKKFLDHYMPELM 134

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYA----FSPDGIQWPSRDDGATSFKLQDLALAN 167
            + +                   +                     D    ++   +A   
Sbjct: 135 EHLHYRTIDVSTFKELARRWYPAVYLNRPPKNGGHRALADIIESLDELRYYRKAFMAPTP 194

Query: 168 GIEHVNAHDAKADVYAT 184
           G +   A     D+ AT
Sbjct: 195 GPDEAEAKAIADDIKAT 211


>gi|291000550|ref|XP_002682842.1| predicted protein [Naegleria gruberi]
 gi|284096470|gb|EFC50098.1| predicted protein [Naegleria gruberi]
          Length = 202

 Score = 41.7 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 61/203 (30%), Gaps = 24/203 (11%)

Query: 5   FVIYDYET-------FGRDVALDRPAQFAGVRV----DRQWEKIESTEVFFCKPADDYLP 53
             + D+E          R+  +    +F  V +    ++Q   ++  +  + K       
Sbjct: 4   ICVLDFEAVFADDCKTNRNYDM-EIIEFPSVLLKFESEKQLVVVDEIQN-YVKTRRIPKI 61

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSR-NIFY 111
           + E   +TGIT +     GV   E  +R +++  S         N +             
Sbjct: 62  NEECTKLTGITQEMV-ESGVSFEEALKRHNEWLMSHLGEKPTKDNILMATCGDWDLKTMI 120

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
            +     + +     S +     ++ ++A   +  +         + KL  L        
Sbjct: 121 PHQVFFEKQTISLIGSHFTQWCNVKDVFAKFYNMEKVNGMLTMLNALKLPLL-------- 172

Query: 172 VNAHDAKADVYATLALVWLIREK 194
              H    D      +V  + ++
Sbjct: 173 GKHHSGIDDCKNIARVVCKMAQQ 195


>gi|162312186|ref|XP_001713129.1| double-strand siRNA ribonuclease [Schizosaccharomyces pombe 972h-]
 gi|121732820|sp|Q08I43|ERI1_SCHPO RecName: Full=3'-5' exonuclease eri1; AltName: Full=Enhanced RNAi
           protein
 gi|115345157|emb|CAL48264.1| double-strand siRNA ribonuclease [Schizosaccharomyces pombe]
          Length = 313

 Score = 41.7 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/202 (9%), Positives = 55/202 (27%), Gaps = 18/202 (8%)

Query: 5   FVIYDYETF-----GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAV 58
            +I D E       G     +   +   +  D  +   I+     + +P+ +        
Sbjct: 82  LLIVDVEATCEEGCGFS-FENEIIELPCLLFDLIEKSIIDEFHS-YVRPSMNPTLSDYCK 139

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY--------YSRNIF 110
            +TGI      +   + ++    +  F    +  ++   +                +N  
Sbjct: 140 SLTGIQQCTVDKAP-IFSDVLEELFIFLRKHSNILVPSVDEIEIIEPLKSVPRTQPKNWA 198

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
           +         S+     ++D + +   I     D   +           +  +    G++
Sbjct: 199 WACDGPWDMASFLAKQFKYDKMPIPDWIKGPFVDIRSFYKDVYRVPRTNINGMLEHWGLQ 258

Query: 171 HVNA-HDAKADVYATLALVWLI 191
              + H    D      +V  +
Sbjct: 259 FEGSEHRGIDDARNLSRIVKKM 280


>gi|323144851|ref|ZP_08079420.1| conserved domain protein [Succinatimonas hippei YIT 12066]
 gi|322415376|gb|EFY06141.1| conserved domain protein [Succinatimonas hippei YIT 12066]
          Length = 410

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 400 FFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGE-YKGDEGKEGLIN 458
            F YR  NF  TL+++E   + E+  K   R  +  +  + + L+    + DE     I 
Sbjct: 343 LFLYRCENFQGTLTDQELNKYYEYCVKK-MRKDLPVFLKEAKILANNLEENDEAGLKRIR 401

Query: 459 ALYEYLQWV 467
            +  + + +
Sbjct: 402 NIIRFAEEL 410


>gi|312220065|emb|CBY00007.1| similar to oligoribonuclease [Leptosphaeria maculans]
          Length = 195

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 10/35 (28%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           V  D E  G D   D     A    D     ++ 
Sbjct: 9  LVWIDCEMTGLDTDNDTIMSLAVFVTDADLNLLDE 43


>gi|308511103|ref|XP_003117734.1| hypothetical protein CRE_00333 [Caenorhabditis remanei]
 gi|308238380|gb|EFO82332.1| hypothetical protein CRE_00333 [Caenorhabditis remanei]
          Length = 3156

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 93/314 (29%), Gaps = 32/314 (10%)

Query: 171  HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
            H   H+    V   + L+ +  +++    + L +  N     ++   +   P        
Sbjct: 1164 HAYVHNQLFRVMEEMELLEMWHDQRYISVQRLLNMVNYRSATEIKTPEKP-PRPSQQPTE 1222

Query: 231  GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290
                   A   P A   RY   +     +       D+    L         E      +
Sbjct: 1223 DELEPEPADETPEAREKRYDGYMKTLVEAY-PEKKCDVKFATLDDVTIRKEVEFYRKQDM 1281

Query: 291  PIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT 350
              +E HL +    +P +   K   E  G+      E L        +      +    + 
Sbjct: 1282 KNRETHLREIVNTLPEEKQTKAKIEYLGLGLLEFQEKLR-----KEVMSHTVLVPPTEFL 1336

Query: 351  SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYR-ARNF- 408
             +   +    ++                   ++  + N  F    L  L    R  + F 
Sbjct: 1337 INPWSIRRTKHEYILELKQHPD----RAALEKKRKSTNYAF----LQSLAKHTREFKEFH 1388

Query: 409  PHTLSE--KEKQDWLEHR---KKMLTRSRIEEYKNKLQSLSGEYKG------DEGKEG-- 455
             +TL++  K  +   ++     K + R  ++  K ++Q L  E +       D  K+   
Sbjct: 1389 KNTLNKHRKVHKSMQQYITNEAKRVAREEMKNEKLRIQKLIQEDEEGYRAMLDSQKDRRL 1448

Query: 456  --LINALYEYLQWV 467
              L+    +Y++ +
Sbjct: 1449 VYLLEQTDDYIKSL 1462


>gi|189440762|ref|YP_001955843.1| oligoribonuclease [Bifidobacterium longum DJO10A]
 gi|189429197|gb|ACD99345.1| Oligoribonuclease [Bifidobacterium longum DJO10A]
          Length = 216

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 60/208 (28%), Gaps = 31/208 (14%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +  D E  G D+   D   + + V  D     ++    +  KP++          +  +
Sbjct: 17  LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEK--------AVNHM 68

Query: 64  TP---QKALRDGVV------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                Q   R G++            E + +  + +F       ++  N I  D  +  +
Sbjct: 69  NDFVRQMHTRSGLINEWENGLSLAEAEQKVTEYVLRFTPEGVRPLLAGNTIGSDKKFLDH 128

Query: 109 IFYRNFYDSYRW-----SWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
                    +       ++     RW   + +                   D    ++  
Sbjct: 129 YMPDLMSHLHYRSVDVSTFKELARRWYPAVYENRPPKNGGHRALADIIESLDELRYYRKA 188

Query: 162 DLALANGIEHVNAHDAKADVYATLALVW 189
            +A A G +   +    AD+ AT  L  
Sbjct: 189 FMAPAPGPDDAASKALAADIVATSILNK 216


>gi|297285840|ref|XP_002802855.1| PREDICTED: three prime repair exonuclease 1-like [Macaca mulatta]
          Length = 474

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 61/210 (29%), Gaps = 33/210 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-----------------FF 44
               + +D E  G   +  +  +   + V R    +ES                      
Sbjct: 171 MQTLIFFDMEATGLPFSQPKVTELCLLAVHR--CALESPPTSQGPPPTVPPPPRVVDKLS 228

Query: 45  CKPADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNT---CIIGYNNIR 100
              A        A  ITG++       G     +    +   F        C++ +N  R
Sbjct: 229 LCVAPGKACSSAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR 288

Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
           +D    +             S  +G    D +  ++     + +    PS      S+ L
Sbjct: 289 YDFPLLQAELAMLGL----TSALDGAFCVDSITALK-----AVERADSPSEHGPRKSYSL 339

Query: 161 QDL-ALANGIEHVNAHDAKADVYATLALVW 189
             +     G    ++H A+ DV A L++  
Sbjct: 340 GSIYTRLYGQSPPDSHTAEGDVLALLSICQ 369


>gi|209885528|ref|YP_002289385.1| exonuclease, RNase T and DNA polymerase III [Oligotropha
           carboxidovorans OM5]
 gi|209873724|gb|ACI93520.1| exonuclease, RNase T and DNA polymerase III [Oligotropha
           carboxidovorans OM5]
          Length = 184

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 57/197 (28%), Gaps = 33/197 (16%)

Query: 1   MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPE 56
           MT     FV  D ET G               V    +       F C+    +   DP+
Sbjct: 1   MTRKKEVFVSVDVETAGPIPGEYSLLSIGACDVGDLTKV------FSCELKPINRNADPK 54

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFF-----SVPNTCIIGYNNIRFDDYYSRNIFY 111
           A+ ++G++  K  RDG+      +    +      +  +   +G N   FD  +    F+
Sbjct: 55  ALEVSGLSLDKLSRDGLDPRAAMQAFADWLAGLAENDRSIVFVGLNAP-FDWSFVNYYFH 113

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           R        S   G +  D+  +          G  W          K   +A       
Sbjct: 114 RFLG-----SNPFGFTALDIKAL-----YMGAVGCDWAET-------KSSKMAERLAPRR 156

Query: 172 VNAHDAKADVYATLALV 188
              H A  D      L 
Sbjct: 157 KGDHQALHDAQYQAELF 173


>gi|229071034|ref|ZP_04204260.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus F65185]
 gi|229080741|ref|ZP_04213259.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock4-2]
 gi|229128808|ref|ZP_04257785.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           BDRD-Cer4]
 gi|229146103|ref|ZP_04274480.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           BDRD-ST24]
 gi|229151731|ref|ZP_04279932.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus m1550]
 gi|228631792|gb|EEK88420.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus m1550]
 gi|228637443|gb|EEK93896.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           BDRD-ST24]
 gi|228654696|gb|EEL10557.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           BDRD-Cer4]
 gi|228702475|gb|EEL54943.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock4-2]
 gi|228711974|gb|EEL63923.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus F65185]
          Length = 273

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 50/182 (27%), Gaps = 21/182 (11%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V+++    + IE                     +TGIT +  +       +  
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSEL---VKPSARLTRHTTKLTGITKKDLMGVEK-FPQII 73

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
            +  QF    +   I  +  + D  +  +       +      +N   R DL   +   Y
Sbjct: 74  EKFIQFIGEGS---IFVSWGKEDYRFLSHDCTLYGVECPSIEKEN---RIDLQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
                        +   S +     LA   E    H A AD   T  ++  +  ++    
Sbjct: 128 ---------EELFEHTPSLQFAVEQLALTWE-GKQHRALADAENTANILLKVYSERDINK 177

Query: 200 EY 201
            Y
Sbjct: 178 RY 179


>gi|311993007|ref|YP_004009873.1| exonuclease A [Enterobacteria phage CC31]
 gi|284177845|gb|ADB81511.1| exonuclease A [Enterobacteria phage CC31]
          Length = 229

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK 46
          M   F+I D+ETFG +V+       A V  D   E +E+ +    +
Sbjct: 1  MIKDFII-DWETFG-NVSRSAVIDVAAVVFDPNPEVVETFDELVQR 44


>gi|304311001|ref|YP_003810599.1| hypothetical protein HDN1F_13630 [gamma proteobacterium HdN1]
 gi|301796734|emb|CBL44946.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 176

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
          ++ D E  G       P +      +                 +      EA  + GI+ 
Sbjct: 9  IVLDVEASGFG-RGSYPIEVGIALPNGDL-----HAWLIKPLLEWVHWQEEAEQVHGISR 62

Query: 66 QKALRDGVVEAEFSRRIHQFFS 87
          ++  R+G+   + +  ++   +
Sbjct: 63 ERLQREGMGVRKVAMALNHMLA 84


>gi|296454705|ref|YP_003661848.1| RNase T/DNA polymerase III exonuclease [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296184136|gb|ADH01018.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 216

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 24/133 (18%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            +  D E  G D+   D   + + V  D     ++    +  K      P  +A  +  +
Sbjct: 17  LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIK------PSEKA--VNHM 68

Query: 64  TP---QKALRDGVV------------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                Q   R G++            E + +  + +F       ++  N I  D  +  +
Sbjct: 69  NDFVRQMHTRSGLINEWENGLSLAEAEQKVTEYVLRFTPEGVRPLLAGNTIGSDKKFLDH 128

Query: 109 IFYRNFYDSYRWS 121
                    +  S
Sbjct: 129 YMPGLMSHLHYRS 141


>gi|198414320|ref|XP_002130965.1| PREDICTED: similar to three prime histone mRNA exonuclease 1 [Ciona
           intestinalis]
          Length = 322

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 62/221 (28%), Gaps = 21/221 (9%)

Query: 5   FVIYDYETF----GRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVF 59
            V+ DYE           L    +F  V +D    + ++     +CKPA +         
Sbjct: 90  LVVLDYEATCEQQNPQDYLHEIIEFPAVLIDTTSTERVDVFHS-YCKPALNPQLSEFCTS 148

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGI             +F+   + F +            + D +  R   +        
Sbjct: 149 LTGIQQSDVDSAP----DFTTVFNNFETW---------MKKHDLFAPRKCAFVTDGPWDF 195

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
             + N       +   R    +  +  +           K+ D+    G+E    H    
Sbjct: 196 SRFLNIQCCLSEIKYPRWAKKW-INLKKVYGNFYKLKKPKMMDMLSNIGLEFEGRHHCGM 254

Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
           D  AT     + R           +  N  +L  + + +  
Sbjct: 255 D-DATNLSRIVQRMLDDGAIFQFNERLNSGKLEVISEKEKA 294


>gi|213420150|ref|ZP_03353216.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 155

 Score = 41.4 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 39/147 (26%), Gaps = 23/147 (15%)

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSR 107
            PEA+   GI P   LR  V E E    I +           +  I+  +N  FD  +  
Sbjct: 11  QPEALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMM 70

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
               R           N    +   D                    G T      LA   
Sbjct: 71  AAAERASLK------RNPFHPFVTFDTA-----------ALSGLALGQTVLSKACLAAGM 113

Query: 168 GIEHVNAHDAKADVYATLALVWLIREK 194
             +   AH A  D   T  L   I  +
Sbjct: 114 EFDGEKAHSALYDTERTAVLFCEIVNR 140


>gi|114053091|ref|NP_001039944.1| ERI1 exoribonuclease 3 isoform 2 [Bos taurus]
 gi|82571565|gb|AAI10160.1| Exoribonuclease 3 [Bos taurus]
          Length = 160

 Score = 41.4 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 41/161 (25%), Gaps = 13/161 (8%)

Query: 36  KIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG 95
           +IEST   + +P       P    +TGI             +   R+ ++ +        
Sbjct: 2   EIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVLERVDEWMAKEG----- 55

Query: 96  YNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155
                     +    +    D        G  ++  L V      +      +       
Sbjct: 56  ------LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCW 109

Query: 156 TSFKLQDLALANGIEH-VNAHDAKADVYATLALVWLIREKK 195
               L D+     ++H    H    D      ++  +  + 
Sbjct: 110 PKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRC 150


>gi|75812542|ref|YP_320161.1| DNA polymerase III, epsilon subunit [Anabaena variabilis ATCC
           29413]
 gi|75705298|gb|ABA24972.1| DNA polymerase III, epsilon subunit [Anabaena variabilis ATCC
           29413]
          Length = 237

 Score = 41.4 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 49/186 (26%), Gaps = 31/186 (16%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITG 62
             +I D ET       + P + +         ++          +     +   A  I  
Sbjct: 2   KLLIIDTET---ADNENTPCEISATLY-----QVGEYSGAIATVSTLIPVEVNNAQAINR 53

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
           I+P+   +      + S  + +  S      + +N                F       +
Sbjct: 54  ISPE-LTQAAHPIYQRSLELLREISAIGDYAVAFNAE--------------FDSQVADKF 98

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
             G      L  MR                     +KL DLAL  GI     H A  DV 
Sbjct: 99  FPGMVSVPWLCAMRDFDWGYHSIN-------SHGGYKLTDLALWLGIGISTVHRAGDDVR 151

Query: 183 ATLALV 188
             +  +
Sbjct: 152 LLVECL 157


>gi|319783791|ref|YP_004143267.1| exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169679|gb|ADV13217.1| Exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 204

 Score = 41.4 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 49/177 (27%), Gaps = 21/177 (11%)

Query: 22  PAQFAGVRV--DRQWEKIESTEVFFCKPADD---YLPDPEAVFITGITPQKALRDGVVEA 76
            AQ   VR+  +  +  + + + +          Y  DP    +TGIT +     GV   
Sbjct: 32  IAQIGAVRLGLEGDFPLLGTHKAYIRPVDRFGQRYALDPFFTKLTGITEEDLETKGVALG 91

Query: 77  EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136
           +    I +F          ++  + +        Y               +R+D    + 
Sbjct: 92  DALADIDRFSEGAR----FWSWGKDELNMIAISCYVAGIQP-----SIPATRFDNAVKLL 142

Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIRE 193
                  +            S KL D            HDA  D  +    +  + +
Sbjct: 143 IAAGMPIE------DLARTPSNKLADYYGVKHPPL-QGHDALDDALSVTYTLQHLMK 192


>gi|261327261|emb|CBH10237.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 762

 Score = 41.4 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 37/130 (28%), Gaps = 12/130 (9%)

Query: 5   FVIYDYETFG---RDVAL-DRPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPEAVF 59
            ++ D+E         +      +F  V VD + +  I      + KP            
Sbjct: 555 LLVVDFEATCEEYAPPSYLHEIIEFPVVVVDAKLQRVITEFH-RYVKPKVKPQLSEFCRQ 613

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSV-----PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           +TGI  +          +  ++  ++++        T ++        ++   +   R  
Sbjct: 614 LTGIRQEDIDSA-APLEDVIKQFERWYAQTIPPGSRTVLVTDGPADLREFMYVHSVTRQG 672

Query: 115 YDSYRWSWDN 124
                  +  
Sbjct: 673 IRFPSMFYQW 682


>gi|72387359|ref|XP_844104.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62360612|gb|AAX81023.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800636|gb|AAZ10545.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 762

 Score = 41.4 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 37/130 (28%), Gaps = 12/130 (9%)

Query: 5   FVIYDYETFG---RDVAL-DRPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPEAVF 59
            ++ D+E         +      +F  V VD + +  I      + KP            
Sbjct: 555 LLVVDFEATCEEYAPPSYLHEIIEFPVVVVDAKLQRVITEFH-RYVKPKVKPQLSEFCRQ 613

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSV-----PNTCIIGYNNIRFDDYYSRNIFYRNF 114
           +TGI  +          +  ++  ++++        T ++        ++   +   R  
Sbjct: 614 LTGIRQEDIDSA-APLEDVIKQFERWYAQTIPPGSRTVLVTDGPADLREFMYVHSVTRQG 672

Query: 115 YDSYRWSWDN 124
                  +  
Sbjct: 673 IRFPSMFYQW 682


>gi|265763451|ref|ZP_06092019.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|299145853|ref|ZP_07038921.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Bacteroides sp. 3_1_23]
 gi|263256059|gb|EEZ27405.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|298516344|gb|EFI40225.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Bacteroides sp. 3_1_23]
          Length = 257

 Score = 41.4 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 71/222 (31%), Gaps = 35/222 (15%)

Query: 8   YDYETFGRDVALDRPAQFA--GVRVDRQWEKIESTEVFFC----KPADDY---------- 51
            D+ET G D       Q A   VR+D  +E I+    +      +P              
Sbjct: 16  LDFETGGLDCQDCACTQIAIHAVRID-TFETIDRYVKYISPYNKQPDKGVAKRKVLKSKF 74

Query: 52  --------LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP--------NTCIIG 95
                     + +A+  + IT       G+   + +  +  F               +IG
Sbjct: 75  DKDDEQPMKYEEKALTYSAITMDMLESLGMDIKQVAAEVIDFIRKNILSKGRNIKPFLIG 134

Query: 96  YNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155
            N      +  + + Y      +          +     +              S  DG 
Sbjct: 135 QNIGFDIGFMQQLMEYGGQMKEFAKLMRGETDFYGHFQPLYIDTIVLGQLAL--SHLDGM 192

Query: 156 TSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPK 197
           +S+KL+ +A   GIE  +AHDA ADV AT  +  +  ++   
Sbjct: 193 SSYKLEIMAEKFGIELDDAHDADADVTATTNVAMVCSQRMRN 234


>gi|300788911|ref|YP_003769202.1| oligoribonuclease [Amycolatopsis mediterranei U32]
 gi|299798425|gb|ADJ48800.1| oligoribonuclease [Amycolatopsis mediterranei U32]
          Length = 191

 Score = 41.4 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 10/105 (9%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF-IT---GITPQK 67
            G D+  +   + A +  D +   +           ++ L   PE V  +    G+T ++
Sbjct: 2   TGLDLGKEALIEIAALVTDAELNVLGDGVDIVIHADEEKLAGMPEIVREMHAHSGLT-EE 60

Query: 68  ALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
             R  V   E        I +    P T  +  N+I  D  +   
Sbjct: 61  VRRSTVTLEEAERRVLDYIREHVPEPGTAPLAGNSIATDRGFIAR 105


>gi|311741087|ref|ZP_07714912.1| DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303889|gb|EFQ79967.1| DNA polymerase III epsilon subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 432

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 8/92 (8%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +V    +T G   +  R      +  +      E  ++F      D    P    + G++
Sbjct: 55  YVALTLQTTGIHPSTGRIVTIDAIAFNDAG---EQGQLFHAVLKPDIDAGPR--HLHGLS 109

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY 96
                +      +  + + +        +I +
Sbjct: 110 TTDIEQAPA-FGKILKSLDRLID--GRTLIVH 138


>gi|313157971|gb|EFR57377.1| exonuclease [Alistipes sp. HGB5]
          Length = 164

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 56/191 (29%), Gaps = 29/191 (15%)

Query: 2   TNHFVIYDYET-FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
              F   D+ET  G+  ++       GV V R  E  +S      +P  ++        I
Sbjct: 1   MKDFAAIDFETANGKRTSVCS----VGVVVVRGGEVTDSFYSLI-RPRPNF-YSRFTTAI 54

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            G+T          E    ++I           +  +N  FD+   R +F         +
Sbjct: 55  HGLTYDDTAEAPDFET-VWKQIAPRIE---GLPLVAHNSPFDEGCLRAVFELYGMPYPGY 110

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                               +        +      + +L  ++ A G +  N H A AD
Sbjct: 111 ------------------RFYCTCRASRRTFGTQLPNHQLHTVSAACGFDLANHHHALAD 152

Query: 181 VYATLALVWLI 191
             A   +   I
Sbjct: 153 AEACARIALKI 163


>gi|229817154|ref|ZP_04447436.1| hypothetical protein BIFANG_02413 [Bifidobacterium angulatum DSM
           20098]
 gi|229784943|gb|EEP21057.1| hypothetical protein BIFANG_02413 [Bifidobacterium angulatum DSM
           20098]
          Length = 217

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 56/202 (27%), Gaps = 19/202 (9%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
            +  D E  G D+   D   + + V  D     ++    +  KP+   +   +     + 
Sbjct: 18  LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSQKAVDHMNDFVRNMH 77

Query: 62  ---GITPQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRN---IFY 111
              G+  +    +G+   E   ++  +           ++  N+I  D  +  +      
Sbjct: 78  TRSGLINE--WENGLSLEEAQAKVVDYVKRFTPDGVKPLLAGNSIGSDKKFLDHYMPELM 135

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYA----FSPDGIQWPSRDDGATSFKLQDLALAN 167
            + +                   +                     D    ++   +A A 
Sbjct: 136 EHLHYRVIDVSTLKELARRWYPAVYQNRPPKNGGHRALADIIESLDELRYYRKAFMAPAP 195

Query: 168 GIEHVNAHDAKADVYATLALVW 189
           G + V A     D+ AT  L  
Sbjct: 196 GPDDVAAKAMADDIAATSILNK 217


>gi|149179996|ref|ZP_01858501.1| exonuclease [Bacillus sp. SG-1]
 gi|148852188|gb|EDL66333.1| exonuclease [Bacillus sp. SG-1]
          Length = 307

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 48/196 (24%), Gaps = 21/196 (10%)

Query: 3   NHFVIYDYETF----GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
             F+ +D+E      G         +   V+ D + + I   +  + +PA          
Sbjct: 5   KQFIFFDFEMKCDDRGMAYENMEAIRLGAVKYDLKTKSITQFD-RYIQPATQEPLSDFCK 63

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI  +                 +F                        + ++     
Sbjct: 64  KLTGINDRDLETADPFPL----VFKEFLYWVGG----------VKKSRFFSWSKSDMSRL 109

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
           +            +D +++ Y             D  +      LAL         H+  
Sbjct: 110 KMDSALHGLPSVTIDKIQSRYVDFQQTFTQRVSKDNLSV--ENALALYGLHFEGEPHNPM 167

Query: 179 ADVYATLALVWLIREK 194
            D Y TL +       
Sbjct: 168 YDAYNTLQIFMHYYSH 183


>gi|313231487|emb|CBY08601.1| unnamed protein product [Oikopleura dioica]
          Length = 196

 Score = 41.4 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 6/125 (4%)

Query: 2   TNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIES--TEVFFCKPADDYLPDPEAV 58
            +     D E  G DV   D   + A V  D +   +      VF               
Sbjct: 7   PDRIFWLDAEMTGLDVLGHDTLMELACVVTDGELNVVVEGPELVFGVSNRQLKRMVAWCR 66

Query: 59  FITGIT--PQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
              G +   +K     +   +    + +F         +  N++  D  +      ++  
Sbjct: 67  KTHGESGLTKKCRESHLTLEDGDEILSEFIRKHCPKAPLAGNSVHADRQFMCKELPKSVK 126

Query: 116 DSYRW 120
           + +  
Sbjct: 127 ELHYR 131


>gi|228953804|ref|ZP_04115843.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805772|gb|EEM52352.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 273

 Score = 41.4 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 50/182 (27%), Gaps = 21/182 (11%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V+++    + IE                     +TGIT +  +       +  
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSEL---VKPSARLTRHTTKLTGITKKDLMGVEK-FPQII 73

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
            +  QF    +   I  +  + D  +  +       +      +N   R DL   +   Y
Sbjct: 74  EKFIQFIGEGS---IFVSWGKEDYRFLSHDCTLYGVECPSIEKEN---RIDLQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
                        +   S +     LA   E    H A AD   T  ++  +  ++    
Sbjct: 128 ---------EELFEHTPSLQFAVEQLALTWE-GKQHRALADAENTANILLKVYSERDINK 177

Query: 200 EY 201
            Y
Sbjct: 178 RY 179


>gi|225575600|ref|ZP_03784210.1| hypothetical protein RUMHYD_03692 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037194|gb|EEG47440.1| hypothetical protein RUMHYD_03692 [Blautia hydrogenotrophica DSM
           10507]
          Length = 319

 Score = 41.4 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 69/238 (28%), Gaps = 27/238 (11%)

Query: 4   HFVIYDYETF----GRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           ++++ D E      G++ A +       +   V++++  E +        +P        
Sbjct: 2   NYIVMDLEWNQCPDGKEYANEKLPFEIIEIGAVKLNQNKEIVGRFHEII-RPQVYKWIHA 60

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
           +   +  +  +           FS  +  F                D    +       Y
Sbjct: 61  KTREVVHLNYRNLANGKS----FSAAVQDFLVWCGEDYRFCTWGTQDLLELQKNMR---Y 113

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                S       +D+                    D  +       +   N  +    H
Sbjct: 114 YQILESLPGPIRYYDV-----------QKLFSIAYEDRSSRRALEYAIEYLNIEKKYKFH 162

Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
            A++D Y T  ++  I + +   ++ +  Y+N    ++ I I+  T    +S  F + 
Sbjct: 163 RAQSDAYYTAEVLQKIEDPEVYCYDSIDVYQNPKGKKQEIHIKYPTYDKFISREFSSK 220


>gi|73536578|ref|XP_847713.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438626|emb|CBZ12385.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 880

 Score = 41.4 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/187 (10%), Positives = 43/187 (22%), Gaps = 19/187 (10%)

Query: 5   FVIYDYETFGRDVALD-------RPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPE 56
            ++ D+E                   +F  V VD + +  +      F +P         
Sbjct: 632 LLVLDFEAT---CEEHPPPNYLYEIIEFPVVVVDARLQRVVAEFH-RFVRPRYKRELSSF 687

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFY 111
              +TG+  +          E  R+  ++ S           +    +   ++   +   
Sbjct: 688 CKKLTGMRQEDVDTA-ASLEEVIRQFERWLSHTLPPHARCMFVTDGPMDLREFMYYHSVS 746

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK-LQDLALANGIE 170
           R         +   + +       R         ++             L D      I 
Sbjct: 747 RQGIRFPSLFYQFIDVKQTFACFFRCSQGKIKAMLEVMHLPFEGRLHSGLDDARNIASIV 806

Query: 171 HVNAHDA 177
               H  
Sbjct: 807 IGLLHHG 813


>gi|307191666|gb|EFN75140.1| Prion protein-interacting protein [Harpegnathos saltator]
          Length = 225

 Score = 41.4 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 43/181 (23%), Gaps = 14/181 (7%)

Query: 21  RPAQF-AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
              +    V   R W+  +     + KP    +  P    +TGI             +  
Sbjct: 34  EIIELPCAVLSTRDWKLKDVFHE-YIKPRVHPILTPFCTELTGIIQDIVDNQPY-FPDVF 91

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
               ++ +                  S    +    +           + D + +     
Sbjct: 92  SNFCEWLTKGGY-----------FDESNKSTFVTCGNWDLKVMLPSQCKLDGITLPDQFK 140

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
            +      +              L   N       H    DV   +A++  ++EK    F
Sbjct: 141 QWIDLKHTFSEFSMYYPRSLPDMLTRLNIPLQGRLHSGIDDVKNMVAIIQTLQEKYNVQF 200

Query: 200 E 200
           +
Sbjct: 201 K 201


>gi|228940620|ref|ZP_04103186.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973539|ref|ZP_04134123.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980098|ref|ZP_04140414.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           Bt407]
 gi|228779684|gb|EEM27935.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           Bt407]
 gi|228786234|gb|EEM34229.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819126|gb|EEM65185.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 273

 Score = 41.4 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 49/182 (26%), Gaps = 21/182 (11%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V+++    + IE                     +TGIT +  +       +  
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSEL---VKPSARLTRHTTKLTGITKKDLMDVEK-FPQII 73

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
            +  QF    +  +       +     R + +               SR DL   +   Y
Sbjct: 74  EKFIQFIGEDSIFV------SWGKEDYRFLSHDCTLHDVECPSIEKESRIDLQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
               +          +  F ++ LAL         H A AD   T  ++  +  ++    
Sbjct: 128 EELFE-------HPPSLQFAVEQLALTW---EGKQHRALADAENTANILLKVYSERDINK 177

Query: 200 EY 201
            Y
Sbjct: 178 RY 179


>gi|297567712|ref|YP_003686683.1| hypothetical protein Mesil_3363 [Meiothermus silvanus DSM 9946]
 gi|296852161|gb|ADH65175.1| hypothetical protein Mesil_3363 [Meiothermus silvanus DSM 9946]
          Length = 1677

 Score = 41.4 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 22/164 (13%)

Query: 22  PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81
             + A    D Q      +  ++    +   PD EA   TGI   +  R+ V      + 
Sbjct: 24  ILEIAAQ--DMQGH----SRRWYIDTPEPLKPDHEAFRFTGIDFHEYEREKVPRERAFKE 77

Query: 82  IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAF 141
           +  F    +  ++G+N +R+D    +        +    +          LD +R     
Sbjct: 78  LLDFL--GDRPLLGHNLLRYDLPLLKRALREVGLELPSTAQ-------PALDTLRLAQLV 128

Query: 142 SPDGIQWPSRDDGATSFKLQDLALAN-GIEHVNAHDAKADVYAT 184
                 +P   +G + ++L DL       E   AH A ADV AT
Sbjct: 129 ------FPLPPEGLSGYRLGDLYRYFTDEELTGAHRAGADVEAT 166


>gi|301781889|ref|XP_002926359.1| PREDICTED: ERI1 exoribonuclease 3-like isoform 2 [Ailuropoda
           melanoleuca]
          Length = 160

 Score = 41.0 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 13/160 (8%)

Query: 36  KIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG 95
           +IEST   + +P       P    +TGI             +   R+ ++ +        
Sbjct: 2   EIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVLERVDEWMAKEG----- 55

Query: 96  YNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155
                     +    +    D        G  ++  L V      +      +       
Sbjct: 56  ------LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCW 109

Query: 156 TSFKLQDLALANGIEH-VNAHDAKADVYATLALVWLIREK 194
               L D+     ++H    H    D      ++  +  +
Sbjct: 110 PKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYQ 149


>gi|109521548|ref|YP_655977.1| gp136 [Mycobacterium phage Wildcat]
 gi|91981000|gb|ABE67716.1| gp136 [Mycobacterium phage Wildcat]
          Length = 171

 Score = 41.0 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 53/203 (26%), Gaps = 44/203 (21%)

Query: 2   TNHFVIYDYETF--GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEA 57
             H ++ D ET   G +       + A     +     +    F            DP+A
Sbjct: 1   MRHIIVVDVETTGLGLNPT---ILEVAA----KDL-MTDRVLSFIPNVPSSCWAGLDPQA 52

Query: 58  VFIT-----GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
           + I      G              +    +            G N       +   +  R
Sbjct: 53  MAINRYFERGSWRDMLT--PNETRDAYAELRDMLD--GNTFAGSNPS-----FDSKLLAR 103

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH- 171
           N       +W        LLD+  A  A   D   W           L D+A A GI   
Sbjct: 104 NG----AVTW-----HHRLLDLA-AYAAGVLDLNPWELPG-------LDDVAKALGIPIP 146

Query: 172 VNAHDAKADVYATLALVWLIREK 194
              H A ADV  T      +  +
Sbjct: 147 EERHGALADVELTAQCFRTLYRE 169


>gi|42521879|ref|NP_967259.1| excinuclease ABC subunit C [Bdellovibrio bacteriovorus HD100]
 gi|39574409|emb|CAE77913.1| excinuclease ABC subunit C [Bdellovibrio bacteriovorus HD100]
          Length = 511

 Score = 41.0 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 6/113 (5%)

Query: 9   DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           D +T G         + A                     A+D       + +TGI  ++ 
Sbjct: 2   DLQTTGAKPGAADILEVAW-----SLSGHSEVHSVLSAQAEDRPVPRRILALTGIASEEL 56

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
                  ++   R++Q        I      R     +   F R+ +      
Sbjct: 57  ESA-TPLSDIFDRLYQDIQDRPAVIHFAQFERPFLTAAFETFKRSEFPIICTH 108


>gi|294461520|gb|ADE76321.1| unknown [Picea sitchensis]
          Length = 436

 Score = 41.0 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 47/192 (24%), Gaps = 27/192 (14%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFI 60
           FV+ D+E     G  ++     +F  V V+             + KP    +       +
Sbjct: 144 FVVIDFEATCDMGTRLSPQEIIEFPSVLVNGMTGRLEGHFHT-YIKPVYHPVLTDFCKEL 202

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPN---TCIIGYNNIRFDDYYS-RNIFYRNFYD 116
           TGI   + +  GV  +E       +        T         +D      +        
Sbjct: 203 TGIQQSQVIG-GVSLSEALLMHDNWLEERGVKNTNFAVVTWSDWDCKVMLESECNLKGIR 261

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
              +     N +    D    +       +++                         AH 
Sbjct: 262 KPNYFNRWINLKLPFYDSFGQLRCNLKGAVEFAGLT-----------------WEGRAHS 304

Query: 177 AKADVYATLALV 188
              D   T  L+
Sbjct: 305 GLDDAKNTARLL 316


>gi|148698604|gb|EDL30551.1| prion protein interacting protein 1, isoform CRA_b [Mus musculus]
 gi|149035533|gb|EDL90214.1| similar to prion protein interacting protein 1, isoform CRA_b
           [Rattus norvegicus]
          Length = 160

 Score = 41.0 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 40/160 (25%), Gaps = 13/160 (8%)

Query: 36  KIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG 95
           +IEST   + +P       P    +TGI             +   R+ ++ +        
Sbjct: 2   EIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVLERVDEWMAKEG----- 55

Query: 96  YNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155
                     +    +    D        G   +  L V      +      +       
Sbjct: 56  ------LLDPNVKSIFVTCGDWDLKVMLPGQCHYLGLPVADYFKQWINLKKAYSFAMGCW 109

Query: 156 TSFKLQDLALANGIEH-VNAHDAKADVYATLALVWLIREK 194
               L D+     ++H    H    D      ++  +  +
Sbjct: 110 PKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYR 149


>gi|228922245|ref|ZP_04085552.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837300|gb|EEM82634.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 273

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 51/182 (28%), Gaps = 21/182 (11%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V+++    + IE                     +TGIT +  +       +F 
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSEL---VKPSARLTRHTTKLTGITKKDLMG----VEKFP 70

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           + I +F        I  +  + D  +  +    +  +          SR DL   +   Y
Sbjct: 71  QIIEKFIQFIGEDSIFVSWGKEDYRFLSHDCTLHGVECPSIE---KESRIDLQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
                        +   S +     LA   E    H A AD   T  ++  +  ++    
Sbjct: 128 ---------EELFEHTPSLQFAVEQLALTWE-GKQHRALADAENTANILLKVYSERDINK 177

Query: 200 EY 201
            Y
Sbjct: 178 RY 179


>gi|311069195|ref|YP_003974118.1| DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942]
 gi|310869712|gb|ADP33187.1| DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942]
          Length = 208

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 54/202 (26%), Gaps = 29/202 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V  D+ET   + + +          +     +     +  +P  +         + GI 
Sbjct: 3   IVSIDFET--ANSSRNSACSLGMTIFENSSIVMN--HEWLIQPKQNR-FHSFNTALHGID 57

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
                 +     E    I  + +     ++  +N  FD    R+       D   + +  
Sbjct: 58  ENMVANEPR-FDELWPEIKPYLTNG---LVIAHNASFDISVLRSTLDDYGLDYPEFEYT- 112

Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
                                  W        S+KL  LA        N H+A+ D  A 
Sbjct: 113 --------------CTLQMAKRHW----KELESYKLSFLADRINFRF-NHHNAREDSKAA 153

Query: 185 LALVWLIREKKPKLFEYLYDYR 206
           + +   I+E+   L        
Sbjct: 154 MLIFLHIQEQYKALHFTELLNH 175


>gi|146415472|ref|XP_001483706.1| hypothetical protein PGUG_04435 [Meyerozyma guilliermondii ATCC
          6260]
          Length = 528

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 10/95 (10%)

Query: 1  MTNHFVIYDY-----ETFG-RDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
          M++ +V+ +      ET              +   VD    +++   + F  +P +    
Sbjct: 1  MSDVYVVVNTATTCDETNSYVTPDSTELILISWCIVDASTLQELTRNQTF-VRPTN-TPI 58

Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV 88
           P    I GI+ +     G    +   ++      
Sbjct: 59 TPWCTQIHGISWEHVRNAG-TFRDAIDKLEAAVKE 92


>gi|119627450|gb|EAX07045.1| prion protein interacting protein, isoform CRA_d [Homo sapiens]
 gi|194375784|dbj|BAG57236.1| unnamed protein product [Homo sapiens]
 gi|296488925|gb|DAA31038.1| ERI1 exoribonuclease 3 isoform 2 [Bos taurus]
          Length = 160

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 13/160 (8%)

Query: 36  KIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG 95
           +IEST   + +P       P    +TGI             +   R+ ++ +        
Sbjct: 2   EIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVLERVDEWMAKEG----- 55

Query: 96  YNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155
                     +    +    D        G  ++  L V      +      +       
Sbjct: 56  ------LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCW 109

Query: 156 TSFKLQDLALANGIEH-VNAHDAKADVYATLALVWLIREK 194
               L D+     ++H    H    D      ++  +  +
Sbjct: 110 PKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYR 149


>gi|328699515|ref|XP_003240958.1| PREDICTED: hypothetical protein LOC100160807 isoform 2
           [Acyrthosiphon pisum]
          Length = 856

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 62/467 (13%), Positives = 108/467 (23%), Gaps = 75/467 (16%)

Query: 18  ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDG--VVE 75
             D P Q A V  D       S +V + +  DD             T  +  R    + E
Sbjct: 37  DNDDP-QIALVTADPTNVSAHSPDVIYIRLRDDSP-----------TDDRCRRRSRMLSE 84

Query: 76  AEFS---RRIHQFFSVPNTCIIGYNNIRFDD---YYSRNIFYRNFYDSYR---------- 119
            E        H    +PN   +  +  R          N       D             
Sbjct: 85  GEVVLLESVAHHSKRLPNGRFLTMHKRRRKKLTTRSLSNENAPALLDDIHHGQVQCVLKH 144

Query: 120 -WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-----SFKLQDLALANGIEHVN 173
            W W       D     R++         W    +         +KL  L          
Sbjct: 145 VWKWPFNAFALDTATGGRSLPVLCVHLFHWYGLMEHFKLDVVQVWKLFSLIEEGYHSTNP 204

Query: 174 AHDAK--ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMF 230
            H+A    DV   +       + K  L            +   L       P +  +   
Sbjct: 205 YHNAIHATDVTQAMHCFLQEDKIKNFLTPLEIMASLIAAVAHDLDHPGVNQPFLIATSNH 264

Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290
            A+      +        +  S IGC L   +          L  ++ +S      +   
Sbjct: 265 LATLYENTSVL----ENHHWRSAIGCLLESHVAEKLSPIRQDLESQI-SSLILATDITRQ 319

Query: 291 PIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT 350
           P      N       +D    E          +C +     R     R     + ++ + 
Sbjct: 320 PEFLKKFNNYLENDELDMKDPELRHFILQIALKCADISNPCRPWDVSRKWSLKVCDEFFR 379

Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
               +    L      D     + +I                       FF++       
Sbjct: 380 QGDYERQLGLPVTDICDRYNNTVPKIQTV--------------------FFKFM------ 413

Query: 411 TLSEKEKQDWLEHRKKMLTR---SRIEEYKNKLQSLSGEYKGDEGKE 454
            L       W +     L+      + + + + + L      DE + 
Sbjct: 414 VLP--LFNLWHKFLDTKLSHSMMENLRKNQQQWEELRERESSDEQQL 458


>gi|239621759|ref|ZP_04664790.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514950|gb|EEQ54817.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 189

 Score = 41.0 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 32/142 (22%), Gaps = 11/142 (7%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV--- 58
           T   +  D ET G D   D   +          +       +      D LP   +    
Sbjct: 5   TEALLWVDIETTGTDPRHDLMLEIGLRCTSMDAKT--EYARYESIIKPDILPTDRSFAYA 62

Query: 59  ----FITGITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
                  G+  +              +  +  F        + +        +       
Sbjct: 63  HRMHEANGLIDEVIDASPELCSTERVALAVIDFTQSMAETHVLHPAGTNMMGFDLPFLEH 122

Query: 113 NFYDSYRWSWDNGNSRWDLLDV 134
             +   +W   +    +  LD+
Sbjct: 123 YLFAEDQWGRFHKLLSYRALDM 144


>gi|319641308|ref|ZP_07996005.1| exonuclease [Bacteroides sp. 3_1_40A]
 gi|317387054|gb|EFV67936.1| exonuclease [Bacteroides sp. 3_1_40A]
          Length = 185

 Score = 41.0 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 65/187 (34%), Gaps = 15/187 (8%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFITG 62
            F + D E+ G+ +  +    F  VR+D + +       F+ K        D EA+ ++G
Sbjct: 2   SFYVIDVESDGQILGRNSLVCFGAVRLDNELQ-----TTFYGKTRPISEEYDGEALAVSG 56

Query: 63  ITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            +  +     D  +  E      +  ++    I+  +N  +D  +        ++ +Y  
Sbjct: 57  FSRSEHESFDDPKLVFERFGEWIEETNLKGRPILIADNNGYDASWINW-----YFLTYSG 111

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
           +   G S   + D+       +    +W    +     K   L       H    DA  +
Sbjct: 112 TNPFGYSSRRISDLWCGFKNDTKMQWKWMRSQEFTD--KDGRLHTGFPHTHNPVEDALGN 169

Query: 181 VYATLAL 187
            +A L +
Sbjct: 170 AHALLYM 176


>gi|162457127|ref|YP_001619494.1| hypothetical protein sce8842 [Sorangium cellulosum 'So ce 56']
 gi|161167709|emb|CAN99014.1| Hypothetical protein T07A9.5a [Sorangium cellulosum 'So ce 56']
          Length = 214

 Score = 41.0 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 7/71 (9%)

Query: 4  HFVIYDYETF-GRDVALDR----PAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEA 57
          H+++ D E     D +  R      +   V VD          + F  +P          
Sbjct: 6  HYLVIDLEATCSDDPSFPRDEMEIIEVGAVLVDAGTLRPAAELQCF-VRPIRHPRLSAFC 64

Query: 58 VFITGITPQKA 68
          + +T I     
Sbjct: 65 MRLTSIRQADV 75


>gi|149041579|gb|EDL95420.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_d
          [Rattus norvegicus]
          Length = 64

 Score = 41.0 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 14/40 (35%)

Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           G D+  D+  + A +  D     +        K  D+ L
Sbjct: 2  TGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 41


>gi|86131767|ref|ZP_01050364.1| exonuclease family protein [Dokdonia donghaensis MED134]
 gi|85817589|gb|EAQ38763.1| exonuclease family protein [Dokdonia donghaensis MED134]
          Length = 400

 Score = 41.0 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 50/187 (26%), Gaps = 24/187 (12%)

Query: 67  KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
                     E ++RI +       C I  +N +FD       F R  Y           
Sbjct: 1   MLRNAPKFH-EVAKRIIEITE---GCTIVAHNAQFDYRILSLEFDRLGY----------- 45

Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
                                      G  S+ L  L  A GI   N H A  D  AT+ 
Sbjct: 46  ---------HFDRTTLCTVELSQELLPGHDSYSLGKLTKALGISMSNRHRADGDAIATVK 96

Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWH 246
           L  L+  K P+   +    R+  +      ++ +   V          +    I  +   
Sbjct: 97  LFELLLSKDPEQIVFKKATRSFPKKHMDTKLKELIKSVPSETGVYFMHNVNETIIYIGKS 156

Query: 247 PRYKDSV 253
              K  +
Sbjct: 157 KNMKKRL 163


>gi|119025471|ref|YP_909316.1| oligoribonuclease [Bifidobacterium adolescentis ATCC 15703]
 gi|154486899|ref|ZP_02028306.1| hypothetical protein BIFADO_00732 [Bifidobacterium adolescentis
           L2-32]
 gi|118765055|dbj|BAF39234.1| oligoribonuclease [Bifidobacterium adolescentis ATCC 15703]
 gi|154084762|gb|EDN83807.1| hypothetical protein BIFADO_00732 [Bifidobacterium adolescentis
           L2-32]
          Length = 217

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 20/131 (15%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPA----DDYLPDPEAVF 59
            +  D E  G D+   D   + + V  D     ++    +  KP+    D       A+ 
Sbjct: 17  LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSQKAVDHMNDFVRAMH 76

Query: 60  I---------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
                      G++  +A             + +F       ++  N I  D  +  +  
Sbjct: 77  TRSGLINEWEHGLSLDEAQAK------VIEYVRKFTPAGVKPLLAGNTIGSDKKFLDHYM 130

Query: 111 YRNFYDSYRWS 121
                + +  +
Sbjct: 131 PELMENLHYRT 141


>gi|331677520|ref|ZP_08378195.1| ribonuclease T [Escherichia coli H591]
 gi|331073980|gb|EGI45300.1| ribonuclease T [Escherichia coli H591]
          Length = 146

 Score = 41.0 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 38/149 (25%), Gaps = 27/149 (18%)

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSR 107
            PEA+   GI P    R  V E E    I +           N  I+  +N  FD  +  
Sbjct: 2   QPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMM 61

Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
               R           N    +   D            +             L       
Sbjct: 62  AAAERASLK------RNPFHPFATFDTAALAGLALGQTV-------------LSKACQTA 102

Query: 168 GIEHV--NAHDAKADVYATLALVWLIREK 194
           G++     AH A  D   T  L   I  +
Sbjct: 103 GMDFDSTQAHSALYDTERTAVLFCEIVNR 131


>gi|225351800|ref|ZP_03742823.1| hypothetical protein BIFPSEUDO_03397 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158144|gb|EEG71427.1| hypothetical protein BIFPSEUDO_03397 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 509

 Score = 41.0 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 59/206 (28%), Gaps = 30/206 (14%)

Query: 8   YDYETFGRDVALDRPA----QF------------AGVRVDRQWEKIEST-----EVFFCK 46
            D ET G D A         +F            AG R ++ + +           F   
Sbjct: 281 IDIETTGTDPARVYIIDAGFEFMNMISPRPAGEPAGYRYEQDYYETGDAYGQARLSFGVP 340

Query: 47  PADDYLPDPEAVFITGITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
             +  L +P  + +TGI  +        +  E+                  +N RF+  +
Sbjct: 341 TQNALLGNPLILDLTGIDVRDRASADFRLFDEWPEAQIGLLQRLEQQPYVAHNARFEHSF 400

Query: 106 SRNIFYRNFYDSYRWSWDNGN-SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
                       Y  S+  GN +  D L + R     S    + P  ++   ++  +   
Sbjct: 401 FMLNVA-----GYAESYRAGNITIIDTLPMSRRWDEGSIPDDEHPHGNNTLDAYAKRQ-- 453

Query: 165 LANGIEHVNAHDAKADVYATLALVWL 190
            A        H    D +  L  +  
Sbjct: 454 GALDASKSERHLGLEDTHIMLVAMKH 479


>gi|330918673|ref|XP_003298311.1| hypothetical protein PTT_08979 [Pyrenophora teres f. teres 0-1]
 gi|311328569|gb|EFQ93599.1| hypothetical protein PTT_08979 [Pyrenophora teres f. teres 0-1]
          Length = 194

 Score = 41.0 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 11/35 (31%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           V  D E  G +  +D     A    D     ++ 
Sbjct: 9  LVWIDCEMTGLNTDIDTIMSLAVFVTDADLNLLDE 43


>gi|302659350|ref|XP_003021366.1| hypothetical protein TRV_04521 [Trichophyton verrucosum HKI 0517]
 gi|291185262|gb|EFE40748.1| hypothetical protein TRV_04521 [Trichophyton verrucosum HKI 0517]
          Length = 172

 Score = 41.0 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 30/121 (24%), Gaps = 17/121 (14%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIE---------STEVFFCKPADDYLPDPEAVFITGI 63
            G D A D   Q      D Q   +E           +    +     +       +T  
Sbjct: 2   TGLDPANDHILQICCFITDAQLNLLEPEGFEAVVHQPQDVLDRMNAWCIDTHGRSGLT-- 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
                L       E +  +  +         T ++  N++  D  +     Y    D   
Sbjct: 60  --AAVLSSSTTAEEAACDLLAYIKQYVPTQRTALLAGNSVHADRAFLAKPPYAQVLDWLH 117

Query: 120 W 120
           +
Sbjct: 118 Y 118


>gi|228959723|ref|ZP_04121398.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229110959|ref|ZP_04240520.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock1-15]
 gi|228672540|gb|EEL27823.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock1-15]
 gi|228799853|gb|EEM46795.1| Exonuclease RNase T and DNA polymerase III [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 273

 Score = 41.0 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 49/182 (26%), Gaps = 21/182 (11%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V+++    + IE                     +TGIT +  +       +  
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSEL---VKPSARLTRHTTKLTGITKKDLMGVEK-FPQII 73

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
            +  QF    +   I  +  + D  +  +       +      +N   R DL   +   Y
Sbjct: 74  EKFIQFIGEGS---IFVSWGKEDYRFLSHDCTLYGVECPSIEKEN---RIDLQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
                        +   S       LA   E    H A AD   T  ++  +  ++    
Sbjct: 128 ---------EELFEHTPSLHFAVEQLALTWE-GKQHRALADAENTANILLKVYSERDINK 177

Query: 200 EY 201
            Y
Sbjct: 178 RY 179


>gi|197322426|ref|YP_002154699.1| putative oligoribonuclease [Feldmannia species virus]
 gi|197130493|gb|ACH46829.1| putative oligoribonuclease [Feldmannia species virus]
          Length = 250

 Score = 41.0 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 14/44 (31%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
             D ET   D +     + A V  D      +S  V    P +
Sbjct: 24 FWIDIETSSLDFSTSDVLEIAIVVTDSGLNVWDSLHVVIHHPIN 67


>gi|171694045|ref|XP_001911947.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946971|emb|CAP73775.1| unnamed protein product [Podospora anserina S mat+]
          Length = 619

 Score = 41.0 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 42/183 (22%), Gaps = 26/183 (14%)

Query: 2   TNHFVIYDYETF----GRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPD 54
           T+ +V+    T     G  V  D     +   + +D     +             +    
Sbjct: 12  TDRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANSIDLHELHRESVLVKPVNTPIT 71

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQF----FSVPNTCIIGYNNIRFDDYYSRNIF 110
           P    +T +T +     G    +   R   F        +   +      +D        
Sbjct: 72  PLCTSLTTLTWEHVRNAG-TFRDAINRFDAFASEHLLSNDLDFVFVTLEAWDLRVQLPRE 130

Query: 111 YRNF---YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
            R+       Y         R            +       P       S  L ++  A 
Sbjct: 131 ARDKSVVLPPYLQHSRTFELR----------TEYQRWQQHHPESLPFGPS-SLANICAAL 179

Query: 168 GIE 170
            +E
Sbjct: 180 EVE 182


>gi|320540682|ref|ZP_08040312.1| putative exonuclease I [Serratia symbiotica str. Tucson]
 gi|320029255|gb|EFW11304.1| putative exonuclease I [Serratia symbiotica str. Tucson]
          Length = 40

 Score = 41.0 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 25/39 (64%)

Query: 431 SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
            R+++Y  +L++L  +Y  D+ K  L++AL++Y + +  
Sbjct: 2   ERVQKYLLQLEALYNQYASDKEKIALLHALFDYGRELAS 40


>gi|89900205|ref|YP_522676.1| oligoribonuclease [Rhodoferax ferrireducens T118]
 gi|89344942|gb|ABD69145.1| Exonuclease [Rhodoferax ferrireducens T118]
          Length = 169

 Score = 41.0 bits (94), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 25/124 (20%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-----------T 61
            G D  ++R  + A +      E         C+     L   ++  +            
Sbjct: 2   TGLDPEIERIIEIAVIVTGPDLE---------CRIEGPVLVIHQSDELLDKMDQWNKGTH 52

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
           G T    K     ++EA+   +I +F S         +  N+I  D  +      +    
Sbjct: 53  GKTGLIDKVKASTLLEAQAEAQIIEFLSQYVPKKGAPMCGNSIGQDRRFLAKYMPKLEAF 112

Query: 117 SYRW 120
            +  
Sbjct: 113 FHYR 116


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score = 40.6 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)

Query: 1  MTNHFVIYDYETFGRDVALDRP--AQFAG 27
          M    +  D ET G D   +R    Q A 
Sbjct: 32 MKARVIGIDTETTGLDPLTERIRLIQIAA 60


>gi|171680369|ref|XP_001905130.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939811|emb|CAP65037.1| unnamed protein product [Podospora anserina S mat+]
          Length = 199

 Score = 40.6 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 11/118 (9%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIES----TEVFFCKPADDYLPDPEAVFIT---GITP 65
            G D   D   +   +  D Q   ++     T V   K   D + D     +    G+T 
Sbjct: 26  TGLDPDNDLILEIYCLITDGQLNLLDDEGWGTIVHQSKARMDAM-DDWCTRVHGGSGLTD 84

Query: 66  QKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
                    E         I Q+    NT ++  N++  D  + R   Y    +   +
Sbjct: 85  AVLRSTVTPEQAADGLLAYIQQYVPDRNTALLAGNSVHADRAFLRKAPYDKVLEHLHY 142


>gi|302769470|ref|XP_002968154.1| hypothetical protein SELMODRAFT_89701 [Selaginella moellendorffii]
 gi|300163798|gb|EFJ30408.1| hypothetical protein SELMODRAFT_89701 [Selaginella moellendorffii]
          Length = 168

 Score = 40.6 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 51/200 (25%), Gaps = 39/200 (19%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            V YD ET    G++ +     +F  V +  +       + +        +    A    
Sbjct: 3   IVFYDLETSMPEGKEQSR-EILEFGAVVLSAKGLV--EVDSYTTPVRPSVMNSRNA---- 55

Query: 62  GITPQKALRDGVVEAEFSRRIH--QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
                     G         I    + +       G+N   FD+      F         
Sbjct: 56  ---------AGTSSGALRLLIESMSYCTQAGRIWAGHNICEFDNVRIEEAFASIGRPMPE 106

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                     D L +++  +               A + KL  LA    +     H +  
Sbjct: 107 A-----AGFIDTLPLLQRTF------------GQRAGNLKLSTLAAYFSLG-KQEHRSLP 148

Query: 180 DVYATLALVWLIREKKPKLF 199
           DV   + ++         +F
Sbjct: 149 DVRMNIKVLKRCATVLLLVF 168


>gi|297518487|ref|ZP_06936873.1| exonuclease I [Escherichia coli OP50]
          Length = 39

 Score = 40.6 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 430 RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
              ++ Y ++LQ L+ +Y  D+ K  L+ AL++Y Q ++
Sbjct: 1   PEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 39


>gi|56757727|gb|AAW27004.1| SJCHGC02520 protein [Schistosoma japonicum]
          Length = 228

 Score = 40.6 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 13/194 (6%)

Query: 48  ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYY 105
                    A  I+G+           ++     I  F +  ++  C + +N +RFD   
Sbjct: 27  NPTRTISSIASKISGLNSDNLFHQKDFDSSAVDLIQLFLNRLDSPVCFVAHNGLRFDFPL 86

Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
            R        + Y+ +  N  + +            +       S      SF L D+  
Sbjct: 87  LRAQIMSVKGNDYKLNDSNECTNY-------MYRYSAFISPIKLSTTTNKHSFHLGDIHE 139

Query: 166 A-NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
              G +H++AH A+ D  A L L+  +        +  Y   N       +   +   + 
Sbjct: 140 RVFGEKHIHAHTAEGDCRAMLRLIQYLGSPAIDWLQSHYVNFNS---LTPMYSFHTPGIS 196

Query: 225 HVSGMFGASRSNTA 238
            +S +F   R+   
Sbjct: 197 RISSLFPYQRTKVC 210


>gi|307188078|gb|EFN72910.1| Oligoribonuclease, mitochondrial [Camponotus floridanus]
          Length = 171

 Score = 40.6 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 7/117 (5%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFITGIT--PQ 66
           E  G D+  D   + A +  D+  + I +        ++  L +  A        T   +
Sbjct: 2   EMTGLDIEKDHILEIACIITDKTLKIISTELNIIIHQSNIILDNMNAWCKKQHKKTGLTE 61

Query: 67  KALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
            +    V   +    +  F      P  C +  N +  D ++            +  
Sbjct: 62  NSRLSTVSLKDAENMVLNFLQEYIHPGVCPLAGNTVYMDRFFLYKYMPLVNNYLHYR 118


>gi|224070575|ref|XP_002192871.1| PREDICTED: similar to Exonuclease domain-containing protein 1
           [Taeniopygia guttata]
          Length = 661

 Score = 40.6 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 10/175 (5%)

Query: 23  AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVV----EAEF 78
            +F  V ++     IES    + +P +  +       +TGIT  +    GV      ++F
Sbjct: 30  VEFPAVLLNTSTGAIESEFHMYVQPQEHPILSEFCTELTGITQNQV-DQGVPLNICLSQF 88

Query: 79  SRRIHQFFSVPNTCIIG--YNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136
            + + +              +N   +      + + ++       ++    +    D++ 
Sbjct: 89  LKWVQKLQKEKKITFSTDSQSNSTSEAKACAFVTWTDWDLGVCLHYECKRKQLRKPDILN 148

Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191
           +          + +R     +  LQDL +A        H    D   T  L W +
Sbjct: 149 SWIDLKATYRAFYNRKPKGLNGALQDLGIAF---EGREHSGLDDSRNTARLAWRL 200


>gi|23501610|ref|NP_697737.1| exonuclease [Brucella suis 1330]
 gi|254704051|ref|ZP_05165879.1| exonuclease, putative [Brucella suis bv. 3 str. 686]
 gi|261754708|ref|ZP_05998417.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|23347526|gb|AAN29652.1| exonuclease, putative [Brucella suis 1330]
 gi|261744461|gb|EEY32387.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
          Length = 203

 Score = 40.6 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 23/176 (13%)

Query: 22  PAQFAGVRV--DRQWEKIESTEVFFCKPAD----DYLPDPEAVFITGITPQKALRDGVVE 75
            AQ   V++  + +   +E+ +  +  P D     Y   P    +TGIT ++  RDG   
Sbjct: 32  IAQIGAVKIGLENELPILETFKA-YVTPHDRYGAHYAIAPYFTDLTGITEEQISRDGKPL 90

Query: 76  AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVM 135
                 +  F          +      +  + + +             +   +  L   M
Sbjct: 91  KTALNDLDSF--SDGATFWSW-GKDELNMIAISCYVEGIAPPIPAPRFDNAVKLLLAAGM 147

Query: 136 RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191
                                S KL D         +  HDA  D  +    +  +
Sbjct: 148 PVE------------DLARTPSNKLADY-YGLEHPELQGHDALDDARSIGYTLQYL 190


>gi|309359093|emb|CAP32716.2| hypothetical protein CBG_14050 [Caenorhabditis briggsae AF16]
          Length = 210

 Score = 40.6 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 60/199 (30%), Gaps = 28/199 (14%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
           +H +I D+ET       D      QF+ V +D +            +P  + +       
Sbjct: 9   DHLLILDFETTSDGEKHDYPFEVIQFSVVPLDLEGIAFNKF----VRPVVNPILSNYCAD 64

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPN------TCIIGYNNIRFDDYYSRNIFYRN 113
            TGI  +             ++  ++             +   +   +     +    R 
Sbjct: 65  FTGIKQEFLNAAD-TFLVVYKQFLEWLQKNGFQERKLAIVCDSSQDMWRIAQYQFRLVRE 123

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-V 172
              S    W N    +D             DG++   ++       ++ ++   GIE   
Sbjct: 124 TMPSMFRQWINIKRTFD-------------DGLEDGQKNKLVGKSNIEKMSSYLGIELSG 170

Query: 173 NAHDAKADVYATLALVWLI 191
            AHDA +D     A+   I
Sbjct: 171 KAHDALSDCLNIAAITQKI 189


>gi|328699517|ref|XP_003240959.1| PREDICTED: hypothetical protein LOC100160807 isoform 3
           [Acyrthosiphon pisum]
          Length = 826

 Score = 40.6 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 42/346 (12%), Positives = 80/346 (23%), Gaps = 44/346 (12%)

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-----SFKLQDLALANGIEHVNA 174
           W W       D     R++         W    +         +KL  L           
Sbjct: 116 WKWPFNAFALDTATGGRSLPVLCVHLFHWYGLMEHFKLDVVQVWKLFSLIEEGYHSTNPY 175

Query: 175 HDAK--ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHVSGMFG 231
           H+A    DV   +       + K  L            +   L       P +  +    
Sbjct: 176 HNAIHATDVTQAMHCFLQEDKIKNFLTPLEIMASLIAAVAHDLDHPGVNQPFLIATSNHL 235

Query: 232 ASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP 291
           A+      +        +  S IGC L   +          L  ++ +S      +   P
Sbjct: 236 ATLYENTSVL----ENHHWRSAIGCLLESHVAEKLSPIRQDLESQI-SSLILATDITRQP 290

Query: 292 IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS 351
                 N       +D    E          +C +     R     R     + ++ +  
Sbjct: 291 EFLKKFNNYLENDELDMKDPELRHFILQIALKCADISNPCRPWDVSRKWSLKVCDEFFRQ 350

Query: 352 SSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
              +    L      D     + +I                       FF++        
Sbjct: 351 GDYERQLGLPVTDICDRYNNTVPKIQTV--------------------FFKFM------V 384

Query: 412 LSEKEKQDWLEHRKKMLTR---SRIEEYKNKLQSLSGEYKGDEGKE 454
           L       W +     L+      + + + + + L      DE + 
Sbjct: 385 LP--LFNLWHKFLDTKLSHSMMENLRKNQQQWEELRERESSDEQQL 428


>gi|260463972|ref|ZP_05812168.1| Exonuclease [Mesorhizobium opportunistum WSM2075]
 gi|259030347|gb|EEW31627.1| Exonuclease [Mesorhizobium opportunistum WSM2075]
          Length = 204

 Score = 40.6 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 50/176 (28%), Gaps = 21/176 (11%)

Query: 22  PAQFAGVRV--DRQWEKIESTEVFFCKPADD---YLPDPEAVFITGITPQKALRDGVVEA 76
            AQ   +++  +  +  + + + +          Y  DP    +TGIT +    +GV   
Sbjct: 32  IAQIGAIKLGLEDDFPLLGTHKAYIRPVDRFGQRYALDPFFTKLTGITEKDVETEGVALG 91

Query: 77  EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMR 136
           E    + +F    +     ++  + +        Y               +R+D    + 
Sbjct: 92  EALANVDRF----SGGARFWSWGKDELNMIAISCYIAGIQP-----SIPATRFDNAVKLL 142

Query: 137 AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIR 192
                  +            S KL D            H+A  D  +    +  + 
Sbjct: 143 IAAGMPIE------DLARTPSNKLADYYGVEHPPLHG-HEALDDALSLAYTLQHLM 191


>gi|323332512|gb|EGA73920.1| Rex2p [Saccharomyces cerevisiae AWRI796]
          Length = 208

 Score = 40.6 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 35/126 (27%), Gaps = 21/126 (16%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KPADDYLPDPEA 57
            G D   DR  +   +  D     +       +S              K  +  +     
Sbjct: 2   TGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCIEHHGN 61

Query: 58  VFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+T +    +  +   E E    I ++    N  ++  N++  D  +    F +  
Sbjct: 62  S---GLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLFMVREFPKVI 118

Query: 115 YDSYRW 120
              +  
Sbjct: 119 DHLFYR 124


>gi|317128745|ref|YP_004095027.1| exonuclease RNase T and DNA polymerase III [Bacillus
          cellulosilyticus DSM 2522]
 gi|315473693|gb|ADU30296.1| Exonuclease RNase T and DNA polymerase III [Bacillus
          cellulosilyticus DSM 2522]
          Length = 312

 Score = 40.6 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 3  NHFVIYDYET--FGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            ++ +D+E     ++++       +   V+ D + E + + + F  KP +D        
Sbjct: 5  KQYIFFDFEMLCSNKNMSFREMEAIRLGAVKYDIESETVSTFDHFI-KPINDEPLSAFCK 63

Query: 59 FITGITPQKALRD---GVVEAEFSRRI 82
           +T I+ +         VV A+F R I
Sbjct: 64 NLTRISEENLKNAKSFPVVFADFLRWI 90


>gi|169629793|ref|YP_001703442.1| hypothetical protein MAB_2709c [Mycobacterium abscessus ATCC 19977]
 gi|169241760|emb|CAM62788.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 182

 Score = 40.6 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 46/189 (24%), Gaps = 23/189 (12%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITG 62
            V  D ET G       P + A +R     +             D  L   DP  + I+G
Sbjct: 3   LVFLDTETTGLHRER-EPWEIAIIRRTAAGQ---RQLHLCVDVQDLDLAAADPAGLQISG 58

Query: 63  --ITPQKALRDGVVEAEF--SRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                 +     +       +       +       I     +FD      +F  +    
Sbjct: 59  FHKRHPQVRLRPLQFPRVFRAAEAVSLVAEWTAGATIVGVIPQFDTECLARMFLAHGVGP 118

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                       +L+DV+    A   D    P  D    S +               H A
Sbjct: 119 TWNP--------ELVDVVATTAARLRDRGLTPDADYSNLSQQFGVKTP----SAAQRHTA 166

Query: 178 KADVYATLA 186
             D    + 
Sbjct: 167 LGDARWAMR 175


>gi|31747840|gb|AAO38419.1| Lfe210p1 [Leptospirillum ferrooxidans]
          Length = 111

 Score = 40.6 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 29/113 (25%), Gaps = 11/113 (9%)

Query: 11  ETFGR--DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
           ET G   D    R  ++A    D   ++I                  E   I GIT +  
Sbjct: 2   ETSGLLRDPE-ARVVEWALSVWDGD-KEIFRGGSLVSGKGP---IPEEVSRINGITTEMT 56

Query: 69  LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
           +       E      +        I+  +N+ FD         R         
Sbjct: 57  VGCP-TFRELYGEWKEHLKK---AIVVAHNLSFDLGMINRDLIRQGEIPLGNP 105


>gi|2920819|gb|AAC04618.1| similar to C. elegans hypothetical protein; similar to AF038615
          (PID:g2736329) [Homo sapiens]
          Length = 89

 Score = 40.6 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 21 RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
             +F  ++++ +  +IEST   + +P       P    +TGI             +   
Sbjct: 1  EIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVLE 59

Query: 81 RIHQFFSVPN 90
          R+ ++ +   
Sbjct: 60 RVDEWMAKEG 69


>gi|32473570|ref|NP_866564.1| alpha-amylase [Rhodopirellula baltica SH 1]
 gi|32398250|emb|CAD78345.1| alpha-amylase [Rhodopirellula baltica SH 1]
          Length = 942

 Score = 40.6 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 54/190 (28%), Gaps = 24/190 (12%)

Query: 271 VQLAKRLFTSHDELKGLVPVPI------KEVHLNKCPILMPIDYCKKEHFERWGIDHKRC 324
            QL +R+++   +L+  +          +     +    +  D   K    R  I    C
Sbjct: 660 EQLTQRIYSPGSDLEQTLRRGFVFAGDVRGDRGREAEPTLDTDGMLKRIDTRSSIV---C 716

Query: 325 LENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQL 384
           ++N   +              ++  +  +Q     L     +     + +      P   
Sbjct: 717 IQNHDFIGNHPT-----GMRLHQLTSPETQAAAVTLAMLLPSIPMLFMGEEFASPNP--- 768

Query: 385 STLNLPFSDRRLPELFFRYRARNFPH------TLSEKEKQDWLEHRKK-MLTRSRIEEYK 437
               + F D RL     R R R +P        L   E+           L    +  + 
Sbjct: 769 FRFFVDFGDPRLQRAVVRGRKREYPQHDWSDGVLPTDEEAMRSSVIGSVELGSETMRNWY 828

Query: 438 NKLQSLSGEY 447
             L S+  ++
Sbjct: 829 KTLISIRKQF 838


>gi|261888732|ref|YP_003264421.1| hypothetical protein pSLTBT_p060 [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|305696883|ref|YP_003864198.1| hypothetical protein pYT1_p055 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|261857320|emb|CBA11393.1| hypothetical protein SLT-BT0592 [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|304376185|dbj|BAJ15347.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|312915768|dbj|BAJ39741.1| YacC [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|327536789|gb|AEA95620.1| hypothetical protein pSD853_77_39 [Salmonella enterica subsp.
           enterica serovar Dublin]
          Length = 169

 Score = 40.6 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V  D ET G D    +  +     V+ + E+I     F  +       DP A  +
Sbjct: 106 VFLDTETTGLDAG-AQALEIG--LVNARGERI-----FETRLKPTVGIDPAAAAV 152


>gi|224504290|ref|YP_002635630.1| hypothetical protein SPC_p058 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470999|gb|ACN48828.1| hypothetical protein SPC_p058 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 169

 Score = 40.6 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V  D ET G D    +  +     V+ + E+I     F  +       DP A  +
Sbjct: 106 VFLDTETTGLDAG-AQALEIG--LVNARGERI-----FETRLKPTVGIDPAAAAV 152


>gi|161867921|ref|YP_001598102.1| YacC [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|161087300|gb|ABX56770.1| YacC [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|323133004|gb|ADX20433.1| YacC protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326626290|gb|EGE32634.1| YacC protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 172

 Score = 40.6 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V  D ET G D    +  +     V+ + E+I     F  +       DP A  +
Sbjct: 109 VFLDTETTGLDAG-AQALEIG--LVNARGERI-----FETRLKPTVGIDPAAAAV 155


>gi|161618693|ref|YP_001592580.1| hypothetical protein BCAN_A0738 [Brucella canis ATCC 23365]
 gi|260566702|ref|ZP_05837172.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|161335504|gb|ABX61809.1| Hypothetical protein BCAN_A0738 [Brucella canis ATCC 23365]
 gi|260156220|gb|EEW91300.1| exonuclease [Brucella suis bv. 4 str. 40]
          Length = 203

 Score = 40.6 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 51/176 (28%), Gaps = 23/176 (13%)

Query: 22  PAQFAGVRV--DRQWEKIESTEVFFCKPAD----DYLPDPEAVFITGITPQKALRDGVVE 75
            AQ   V++  + +   +E+ +  +  P D     Y   P    +TGIT ++  RDG   
Sbjct: 32  IAQIGAVKIGLENELPILETFKA-YVTPHDRYGAHYAIAPYFTDLTGITEEQISRDGKPL 90

Query: 76  AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVM 135
                 +  F    +     ++  + +        Y                R+D    +
Sbjct: 91  KTALNDLDSF----SDGATFWSWGKDELNMIAISCYVEGIAPLI-----PAPRFDNAVKL 141

Query: 136 RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191
                   +            S KL D         +  HDA  D  +    +  +
Sbjct: 142 LLAAGMPVE------DLARTPSNKLADY-YGLEHPELQGHDALDDARSIGYTLQYL 190


>gi|12084972|ref|NP_073265.1| hypothetical protein pKDSC50_p41 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|60115507|ref|YP_209299.1| hypothetical protein SCV45 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|586926|sp|P37414|YTL1_SALTY RecName: Full=Uncharacterized protein pSLT049
 gi|444032|emb|CAA82633.1| 15 kDa protein similar to coliphage 186 CP81 [Salmonella enterica
           subsp. enterica serovar Typhimurium]
 gi|12060342|dbj|BAB20548.1| orf41 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|16445245|gb|AAL23463.1| putative DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|45359331|gb|AAS58918.1| hypothetical protein pSLT049 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|267990085|gb|ACY86482.1| putative DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|322713012|gb|EFZ04584.1| hypothetical protein SCA50_p44 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|332991504|gb|AEF10486.1| putative DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 138

 Score = 40.6 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V  D ET G D    +  +     V+ + E+I     F  +       DP A  +
Sbjct: 75  VFLDTETTGLDAG-AQALEIG--LVNARGERI-----FETRLKPTVGIDPAAAAV 121


>gi|332530659|ref|ZP_08406591.1| hypothetical protein HGR_11990 [Hylemonella gracilis ATCC 19624]
 gi|332039887|gb|EGI76281.1| hypothetical protein HGR_11990 [Hylemonella gracilis ATCC 19624]
          Length = 163

 Score = 40.6 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 8/82 (9%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFITGIT 64
          V+ D E  G       P +      D              +P       DP A  +  I 
Sbjct: 5  VVLDLEASGFG-RHGYPIEVGFAMGD------GRLFCSLIRPEPDWTHWDPMAERLHRIP 57

Query: 65 PQKALRDGVVEAEFSRRIHQFF 86
           +  ++ G    E  R ++   
Sbjct: 58 RRLLMQHGRSPWEVGRLLNSAL 79


>gi|331646986|ref|ZP_08348085.1| putative cytoplasmic protein [Escherichia coli M605]
 gi|331044303|gb|EGI16434.1| putative cytoplasmic protein [Escherichia coli M605]
          Length = 382

 Score = 40.6 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 56/206 (27%), Gaps = 28/206 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           MT   V  D E+ G   A D   + A +        +       C P         A   
Sbjct: 1   MTRSRVCPDTESTGLSPASDALPETAII--SDTGVPL--VNTLICPPDTFKARSA-AQAA 55

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             ITP         +   + RI       +  +I YN                 +D+   
Sbjct: 56  HCITPAMVRDKFTPDKP-ASRIRTAVQDQD--VIIYNAS---------------FDASFP 97

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKA 179
                 +R     ++           +W          +L   A A   +   + H A A
Sbjct: 98  GDLLAGARSVQCCMLARAR----HVGEWSGWHGDWRLHRLDQAAAAVCFDWSGDKHRALA 153

Query: 180 DVYATLALVWLIREKKPKLFEYLYDY 205
           D  A  A+   + ++  +    +  +
Sbjct: 154 DARACRAVWQFMNDESERRRVDIVRH 179


>gi|2564085|gb|AAB81660.1| putative [Enterobacteria phage N15]
          Length = 114

 Score = 40.6 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 8/72 (11%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
          + + +++ D ET G         ++A +                          PE   I
Sbjct: 17 LKSDYLLIDTETTGLG-------EYAEIIEIAIINMRGEVL-LDTLVKPTKPIPPEVTEI 68

Query: 61 TGITPQKALRDG 72
            IT +      
Sbjct: 69 NHITNEMVASAP 80


>gi|309356043|emb|CAP37629.2| CBR-JMJD-2 protein [Caenorhabditis briggsae AF16]
          Length = 881

 Score = 40.6 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 70/277 (25%), Gaps = 33/277 (11%)

Query: 38  ESTEVFFCKP---ADDYLPDPEAVFITGI---TPQKALRDGVVEAEFSRRIHQF-FSVPN 90
           +  E F  +     D   P  +A         TP+      +  A   +R ++F  + P 
Sbjct: 279 DRFERFMSQQFSDQDGKAPKCKAFLRHKTFIVTPELLRAAKIPYATMIQRPNEFIITFPR 338

Query: 91  TCIIGYNNIRFDDYYSRNIFYR---NFYDSYRWSWDNGNSRWDLLDVMRAIYAFS--PDG 145
              +G+N        +     R      D+     +  + + D+   M         P  
Sbjct: 339 GYHMGFNLDYNLAESTNFATDRWIDYGKDAVLCECNKSSVKIDMHCFMSQYRQHEVIPWV 398

Query: 146 IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKK---------- 195
             W    D       +  A  N      +    +    +L  V  +              
Sbjct: 399 DYWYCPKDDKKGVAKKRKAQENRSPAKRSRLGVSSCSDSLESVAEVSSFMRSLPGYTMDR 458

Query: 196 ---PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDS 252
                 ++ L   +NK    +L     +     +   +   RS       V         
Sbjct: 459 VEFRPDYDELLKLQNKKVSFELRSNNRVN--FFLERRYNELRSVEWPHCSVCQ------Y 510

Query: 253 VIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289
               +++        +    +   +F+   EL     
Sbjct: 511 FQPIHMTTRNAELPVMSRRLIPSSVFSKTPELTDPEK 547


>gi|116515093|ref|YP_802722.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256947|gb|ABJ90629.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 231

 Score = 40.6 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 58/225 (25%), Gaps = 38/225 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDR-----------QWEKIESTEVFFCKPADDYLPD 54
           V  D ET G +           + ++              +       ++  P       
Sbjct: 9   VFLDIETTGMNKY-------GCIYLNHKIIEIGIIETINRKYTGRYIHYYLYPQRSIESS 61

Query: 55  PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
             A  I GI+            +  + I  F       +   +N  FD  +    F+   
Sbjct: 62  --AYKIHGISESFLSNKP-TFKDIYKEIFNFIKNSEIIV---HNSNFDISFLDYEFF--L 113

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
            +         ++  D L + R ++       +  + D     +K+ ++           
Sbjct: 114 LNIGINKIKTFSTITDTLFIARKLFP-----GKKNNLDALCARYKITNINRNF------- 161

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
           H A  D    + L   +   + ++       +     +       
Sbjct: 162 HSALLDAKILMKLYMYMTSIQKEINFSRNYIKKIKIPKNFFKYYK 206


>gi|89097554|ref|ZP_01170443.1| exonuclease [Bacillus sp. NRRL B-14911]
 gi|89087850|gb|EAR66962.1| exonuclease [Bacillus sp. NRRL B-14911]
          Length = 320

 Score = 40.6 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 29/198 (14%)

Query: 5   FVIYDYETFGRDVALD------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           +V +D+E                  +   V+ D    +  S    + KP +         
Sbjct: 7   YVFFDFEM--LCSNKGMLFEDMEAIRLGAVKYDL-ITEKLSFFDEYIKPENHKPLSMFCK 63

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYRNFYD 116
            +TGI  +           F+     F    N       Y+  + D         R+   
Sbjct: 64  RLTGIEDKDLRDADR----FADVFSTFLYWVNGVKKTRFYSWSKSDLSRLNADAARHGIP 119

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           S      N  SR+     + +  A        PS ++    + L  +           H+
Sbjct: 120 SATIEKIN--SRYVDFQEVFSNRA----ANNTPSVENALALYGLDFV--------GETHN 165

Query: 177 AKADVYATLALVWLIREK 194
              D Y TL + +     
Sbjct: 166 PMFDSYNTLRIFFAFERN 183


>gi|145542502|ref|XP_001456938.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424752|emb|CAK89541.1| unnamed protein product [Paramecium tetraurelia]
          Length = 176

 Score = 40.2 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 45/153 (29%), Gaps = 26/153 (16%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP----- 65
           E  G +V  D+  + A V  D + E I              +   +   + G+       
Sbjct: 2   EMTGLNVFQDQILEIACVLTDFKLETIIK--------GPHLVIHADNQVLEGMDQWCTKT 53

Query: 66  -------QKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFYRNF 114
                  +++L+  +   +   +I  F +     P    +  N++  D  +      +  
Sbjct: 54  HKASGLYEESLKSTLNVQQAEEQILNFLNQNNIPPKVLPLAGNSVYMDRLFVMKNMPK-- 111

Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
            D +        S   LL      Y  +    +
Sbjct: 112 LDQFLHYRIVDVSSVQLLCRRLNPYVCNHQPQK 144


>gi|328877052|gb|EGG25415.1| putative RNase III [Dictyostelium fasciculatum]
          Length = 297

 Score = 40.2 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 54/187 (28%), Gaps = 6/187 (3%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            V+ D+E     G  +      +F  V VD + +++ +    + +P  +         +T
Sbjct: 64  IVVLDFEATCDDGTKIKNQEVIEFPSVIVDVEKQQVVAQFAEYVRPVYNPTLSAFCTQLT 123

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF--YDSYR 119
           GI         + E  F R              G  N            +       +  
Sbjct: 124 GIQQATVDSADIFENVFKRHFKFLVDNKLLQENGARNEENPFAVLCCGDWDLLQMLPAQC 183

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
               N +     L      +    +  +   ++   +++ + ++     I  V  H +  
Sbjct: 184 RINKNESGELHYLPP-PNYFTEWINVKKIFEKNYNMSAYGMANMLRQLSIPLVGRHHSGI 242

Query: 180 DVYATLA 186
           D    ++
Sbjct: 243 DDCRNIS 249


>gi|270158349|ref|ZP_06187006.1| ribonuclease T [Legionella longbeachae D-4968]
 gi|289163409|ref|YP_003453547.1| ribonuclease T [Legionella longbeachae NSW150]
 gi|269990374|gb|EEZ96628.1| ribonuclease T [Legionella longbeachae D-4968]
 gi|288856582|emb|CBJ10387.1| ribonuclease T [Legionella longbeachae NSW150]
          Length = 205

 Score = 40.2 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 53/200 (26%), Gaps = 33/200 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
           V+ D ET G +   +   +   V +  D Q +     +      P      DP+++    
Sbjct: 21  VVVDVETAGVNPQKNALLEMCIVLILMDDQGKFYRGKSYFEHILPFSGSELDPKSLEFNQ 80

Query: 63  ITP---------QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           I P         +K   + +    F+             ++  +N  FD  + +    R 
Sbjct: 81  IDPFQPLRFAIDEKTALENLFHPIFAAL---KIFQCQRAVLVGHNAWFDLLFIKEAIKRT 137

Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
                     +    +   D            +   +      +F           +   
Sbjct: 138 GV-------KSPFHAFTCFDTATLGGFIYGQTVLAKAAQAAGIAF-----------DAQE 179

Query: 174 AHDAKADVYATLALVWLIRE 193
           AH A  D   T  L   +  
Sbjct: 180 AHSAIYDAEKTADLFCHMAN 199


>gi|326518256|dbj|BAJ92491.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 321

 Score = 40.2 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 12/176 (6%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
              +F  V VD    +IES+   + +P    +       +TGI  +     GV   E   
Sbjct: 38  EIIEFPAVLVDGASGRIESSFRRYVRPKHHPVLTQFCRKLTGIRQEDV-DGGVDLGEAL- 95

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN--GNSRWDLLDVMRAI 138
            +H  +    T   G +        +   +       +   +      S +D    +R  
Sbjct: 96  WLHDAWLKAATAGAGSSRRVQLAVVTWGDWDCRTMLEFECRFKGIEKPSYFDRWINLRVP 155

Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
           +  +  G    + ++   +  L              H    D   T  L+  I  +
Sbjct: 156 FQAALGGGGRVNLEEAVRAAGLD--------WEGRLHCGLDDALNTARLLAEIMRR 203


>gi|290985826|ref|XP_002675626.1| hypothetical protein NAEGRDRAFT_80259 [Naegleria gruberi]
 gi|284089223|gb|EFC42882.1| hypothetical protein NAEGRDRAFT_80259 [Naegleria gruberi]
          Length = 465

 Score = 40.2 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 66/211 (31%), Gaps = 22/211 (10%)

Query: 271 VQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTL 330
             +  ++ +   +  G     I+++  N    +       K   +   +  K+  +    
Sbjct: 229 SDIPDKMISRAKKRFGEQHEDIEKIKFNGIQTIFVGTSFDKASEKYNPLQLKQLNQTFRF 288

Query: 331 LRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLP 390
           L    +    F  IYN    + + D   + +  +F    +          P +   +   
Sbjct: 289 LCHTFSTSPMFMGIYNDMKINENNDSSFRNFINYFILGGKLSTSDFNLKDPVKPLKVICG 348

Query: 391 FSDRRLPELFFRYRARNFPHTLSEKEK-----QDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
             D     +         P   S+  +     +   E   KM     IE++ +  Q++  
Sbjct: 349 -KDS-YKNIG-------NPPVQSKSLQLSEKPKRIKEKIMKMFGDKDIEKWFDSYQAMFA 399

Query: 446 E----YKGDEGKEGLINALY--EYLQWVIPK 470
           E     + D  KE +   L   EY + V+ +
Sbjct: 400 EVDEGNEDDSNKEVM--DLNFSEYAEEVVDE 428


>gi|195112234|ref|XP_002000679.1| GI22396 [Drosophila mojavensis]
 gi|193917273|gb|EDW16140.1| GI22396 [Drosophila mojavensis]
          Length = 187

 Score = 40.2 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 12/35 (34%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           V  D E  G ++  D   + + +  D+       
Sbjct: 14 IVWMDLEMTGLNLDKDVILEVSCIITDKLLNIKSE 48


>gi|228992243|ref|ZP_04152176.1| Exonuclease RNase T and DNA polymerase III [Bacillus pseudomycoides
           DSM 12442]
 gi|228767496|gb|EEM16126.1| Exonuclease RNase T and DNA polymerase III [Bacillus pseudomycoides
           DSM 12442]
          Length = 257

 Score = 40.2 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 44/182 (24%), Gaps = 21/182 (11%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  ++V+      I                      +TGIT Q      V   E  
Sbjct: 2   EVVDIGAIKVEASTVRIIGQFSSL---VKPTAPLTRHTTKLTGITKQDLKEVEV-FPEVM 57

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
            R  QF        +     + D  +       +  +           ++DL   +   Y
Sbjct: 58  ERFLQF---AGDDYMFITWGKEDYKFLAQDCKLHHIECPNIE---DERKFDLQKFVFQAY 111

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
                            S K      +   E    H A AD   TL +   + ++K    
Sbjct: 112 ---------DQLFIHTPSLKFAVEQFSLEWE-GKQHRAFADAKNTLNIFLKVFKEKDIYK 161

Query: 200 EY 201
            Y
Sbjct: 162 RY 163


>gi|226492270|ref|NP_001146741.1| hypothetical protein LOC100280343 [Zea mays]
 gi|219888569|gb|ACL54659.1| unknown [Zea mays]
          Length = 427

 Score = 40.2 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 10/129 (7%)

Query: 5   FVIYDYETFG---RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           FV+ D+E       +       +F  V V+    K+E     + +P            +T
Sbjct: 129 FVVIDFEATCDKVNNPFPQEIIEFPSVLVNSATGKLEECFQTYVRPTYHQFLTDFCKELT 188

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFY-RNFY 115
           GI   +    GV   E      ++            I+ ++N            + R   
Sbjct: 189 GIQQIQV-DRGVPLGEALLMHDKWLEDKGIKNTNFAIVTWSNWDCRIMLESECRFKRIRK 247

Query: 116 DSYRWSWDN 124
             Y   W N
Sbjct: 248 PPYFNRWIN 256


>gi|229191624|ref|ZP_04318603.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus ATCC
           10876]
 gi|228591786|gb|EEK49626.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus ATCC
           10876]
          Length = 273

 Score = 40.2 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 51/182 (28%), Gaps = 21/182 (11%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V+++    + IE                     +TGIT +  +       +F 
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSEL---VKPSARLTRHTTKLTGITKKDLMG----VEKFP 70

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           R I +F        I  +  + D  +  +       +      +N   R DL   +   Y
Sbjct: 71  RIIEKFIQFIGEGSIFVSWGKEDYRFLSHDCTLYGVECPSIEKEN---RIDLQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
                        +   S +     LA   E    H A AD   T  ++  +  ++    
Sbjct: 128 ---------EELFEHTPSLQFAVEQLALTWE-GKQHRALADAENTANILLKVYSERDINK 177

Query: 200 EY 201
            Y
Sbjct: 178 RY 179


>gi|229086122|ref|ZP_04218342.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock3-44]
 gi|228697181|gb|EEL49946.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           Rock3-44]
          Length = 281

 Score = 40.2 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 57/242 (23%), Gaps = 29/242 (11%)

Query: 5   FVIYDYETFGRDVALDR----PAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVF 59
           ++++D E         +          ++V+      I                      
Sbjct: 7   YIVFDVERN-FRPYKSQDPSEVVDIGAIKVEASTMRMIGRFASL---VKPTAPLTRHTTK 62

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           +TGIT Q      +   +   +  QF    N   + +    +         +     S  
Sbjct: 63  LTGITKQDLKEVEM-FPKVIEQFLQFTED-NCMFVTWGKEDYKFLAQDCQLHHIECPSIE 120

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
                    +DL   +   Y                 S K      A   E    H A A
Sbjct: 121 NERK-----FDLQKFVFQAY---------EELFIDTPSLKFAVEQFALEWE-GKQHRAYA 165

Query: 180 DVYATLALVWLIREKKPKLFEYLYDY---RNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
           D   TL +   + ++K     Y  +      KN +      + M   V            
Sbjct: 166 DAKNTLNIFLKVCKEKDIYKRYKRNEELVLTKNGVLTEKAKKKMKRWVFKELKKKEHIPF 225

Query: 237 TA 238
             
Sbjct: 226 HW 227


>gi|47226718|emb|CAG07877.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 445

 Score = 40.2 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 44/191 (23%), Gaps = 18/191 (9%)

Query: 265 FQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRC 324
              L   +  K       E        +K    +   +L   +   +   E      +  
Sbjct: 40  KWKLTFQEQHKLEVRKERERHAAQAAGLKLEMESLKELLRTYETSSQRKDEVIANLSQVL 99

Query: 325 LENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQL 384
                 + +                 + S  +  Q +              +++   +  
Sbjct: 100 DRQKEKIEKMRTFTHWRIKHTEAKEEAFSFQIAQQHHSLQLKRKVWLGWHTLVKKPWKVQ 159

Query: 385 STLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLS 444
                            R RA      LS++ +    EH         I + + ++Q L 
Sbjct: 160 VEQAC------------RARAEEVCSHLSKEYEAKLAEHC------EVIAKAQAEIQRLR 201

Query: 445 GEYKGDEGKEG 455
            E +  E    
Sbjct: 202 LERERYEESMK 212


>gi|229179820|ref|ZP_04307167.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           172560W]
 gi|228603649|gb|EEK61123.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus
           172560W]
          Length = 273

 Score = 40.2 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 49/182 (26%), Gaps = 21/182 (11%)

Query: 21  RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
                  V+++    + IE                     +TGIT    +        F 
Sbjct: 18  EIVDIGAVKIEIGTMKIIEEFSEL---VKPSARLTRHTTKLTGITKTDLMAVDK----FP 70

Query: 80  RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
           + I +F        I  +  + D  +  +    +  +          SR DL   +   Y
Sbjct: 71  QIIEKFIQFIGEDSIFVSWGKEDYRFLSHDCTLHGVECPIIE---KESRIDLQKFVFQAY 127

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
                        +   S +     LA   E    H A AD   T  ++  +  ++    
Sbjct: 128 ---------EELFEHTPSLQFAVEQLALTWE-GKQHRALADAENTANILLKVYSERDINK 177

Query: 200 EY 201
            Y
Sbjct: 178 RY 179


>gi|323336602|gb|EGA77868.1| Rex2p [Saccharomyces cerevisiae Vin13]
          Length = 208

 Score = 40.2 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 21/126 (16%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKI-------ESTEVFFC--------KPADDYLPDPEA 57
            G D   DR  +   +  D     +       +S              K  +  +     
Sbjct: 2   TGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMBKMNEWCIEHHGN 61

Query: 58  VFITGITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+T +    +  +   E E    I  +    N  ++  N++  D  +    F +  
Sbjct: 62  S---GLTAKVLASEKTLAQVEDELLEYIQXYIPDKNVGVLAGNSVHMDRLFMVREFPKVI 118

Query: 115 YDSYRW 120
              +  
Sbjct: 119 DHLFYR 124


>gi|317128939|ref|YP_004095221.1| exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473887|gb|ADU30490.1| Exonuclease RNase T and DNA polymerase III [Bacillus
           cellulosilyticus DSM 2522]
          Length = 220

 Score = 40.2 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 60/239 (25%), Gaps = 36/239 (15%)

Query: 6   VIYDYETFGRDVAL-----DRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVF 59
           V+YD E                 +    +VD    + I+  ++ +  P + Y+P     F
Sbjct: 4   VVYDLE---LVKRFKKGQLSEIIEIGACKVDLTSLKIIDDIQI-YMLPKNGYIPKSSRKF 59

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I  +T        +  ++  ++   +        +         ++       N    + 
Sbjct: 60  IN-MTQDDVKSA-IPFSDGMKKFIFWLQKEEDYFLCSWGKDDKVHFIDQCLRNNMKLKWF 117

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            ++++   +                G             K   L LAN      AH    
Sbjct: 118 KNYNDIQPQI---------------GKALKQNTKNQLGLK-NALHLANIEPVGQAHRGID 161

Query: 180 DVYATL--------ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
           D   T          +         K        R K + R     +     +H +   
Sbjct: 162 DTINTALLLIKYFDEVTLRTNMITEKELNLFESKRKKRRNRPHSKSEKQIKHIHSTDKI 220


>gi|291532696|emb|CBL05809.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Megamonas hypermegale ART12/1]
          Length = 142

 Score = 40.2 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 39/146 (26%), Gaps = 24/146 (16%)

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
           + I GI PQ         A+    +  +    +  I+  +N  FD    R+         
Sbjct: 8   IKIHGIIPQMVENAP-TFADIWNDLRMYL---DNRIVIAHNAFFDMGVLRSC-------- 55

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
             W ++    ++     ++      P             + KL  L     I+    HDA
Sbjct: 56  -IWKYNLAKPQFKTACTVQIARKVWPQL----------PNHKLNTLGEFFQIQF-KHHDA 103

Query: 178 KADVYATLALVWLIREKKPKLFEYLY 203
             D      +  +             
Sbjct: 104 LDDAKVCAKIPLVAGRTVGVDNMDSL 129


>gi|195629706|gb|ACG36494.1| histone mRNA exonuclease 1 [Zea mays]
          Length = 437

 Score = 40.2 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 10/129 (7%)

Query: 5   FVIYDYETFG---RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           FV+ D+E       +       +F  V V+    K+E     + +P            +T
Sbjct: 138 FVVIDFEATCDKVNNPFPQEIIEFPSVLVNSATGKLEECFQTYVRPTYHQFLTDFCKELT 197

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFY-RNFY 115
           GI   +    GV   E      ++            I+ ++N            + R   
Sbjct: 198 GIQQIQV-DRGVPLGEALLMHDKWLEDKGIKNTNFAIVTWSNWDCRIMLESECRFKRIRK 256

Query: 116 DSYRWSWDN 124
             Y   W N
Sbjct: 257 PPYFNRWIN 265


>gi|168023232|ref|XP_001764142.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684582|gb|EDQ70983.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1974

 Score = 40.2 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 348  PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN 407
              T +S  + ++ Y+          +    ++  E+L+     F D        R   R 
Sbjct: 1122 KPTKTSAALAAEAYESQMQGQALFNLKDSHKSERERLNARKYKFDD------AAR---RE 1172

Query: 408  FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL-SGEYKGDEGKEGLINALYEY 463
             PH +     + + E  +K L     ++    L  L        +    +++ ++ +
Sbjct: 1173 QPHDIEVDIVKFFREDLQKKLLSPDFKKQIEGLDILQRAIPTQTKEIIEILDVIFRW 1229


>gi|20089704|ref|NP_615779.1| hypothetical protein MA0820 [Methanosarcina acetivorans C2A]
 gi|19914634|gb|AAM04259.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 249

 Score = 40.2 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 2   TNHFVIYDYETFGRDVALDRPA 23
           ++    +D ET G   A DR  
Sbjct: 84  SDSVAFFDIETTGLSPARDRIT 105


>gi|330798154|ref|XP_003287120.1| hypothetical protein DICPUDRAFT_151177 [Dictyostelium purpureum]
 gi|325082898|gb|EGC36366.1| hypothetical protein DICPUDRAFT_151177 [Dictyostelium purpureum]
          Length = 88

 Score = 40.2 bits (92), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 9/68 (13%)

Query: 4  HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
          +  I D ET G   +     +     ++         E F+ KP       PE+  I  +
Sbjct: 16 NIFILDSETTGL-TSNAEIIELLCACLNG--------EAFYRKPNPTISITPESTKINNL 66

Query: 64 TPQKALRD 71
          T       
Sbjct: 67 TSHDLTGH 74


>gi|239978446|ref|ZP_04700970.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291450342|ref|ZP_06589732.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353291|gb|EFE80193.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 237

 Score = 40.2 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 42/179 (23%), Gaps = 12/179 (6%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDG 72
            G D   DR    A V  D          V     +       E     G+T  +  R G
Sbjct: 17  TGPDAEEDRLVTAAVVVQDLAG---ARPRVLRWLVSPGVTVTEEEAARHGLTRDQVERTG 73

Query: 73  VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLL 132
              A     +          +  +                   D         +    L 
Sbjct: 74  RWPAPVMEEV-------GRSLAAHAAAGRPLVVDDAPAALTLLDRELRRHRASSLGAYLA 126

Query: 133 DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191
            V   +    P  +          S +L  L +  G+     HDA  +    + +V  +
Sbjct: 127 GV--PLSVLDPCVLDTHLDRYRKGSRQLDALCVRYGVPAPPPHDAAEEARTAIEVVRAL 183


>gi|71400147|ref|XP_802963.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70865423|gb|EAN81517.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 160

 Score = 40.2 bits (92), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 12/77 (15%)

Query: 8   YDYETFGRD------VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           +D E  G           D   +F            ++       P +      E   +T
Sbjct: 90  FDLEFSGPPVFGPDGPTED-IIEFGFY-----SPAKDTVFSCLVNPTNGRRVSQEVTALT 143

Query: 62  GITPQKALRDGVVEAEF 78
            IT +   ++G+   E 
Sbjct: 144 NITQEMLEKEGLPFPEA 160


>gi|268532740|ref|XP_002631498.1| C. briggsae CBR-JMJD-2 protein [Caenorhabditis briggsae]
          Length = 783

 Score = 40.2 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 70/277 (25%), Gaps = 33/277 (11%)

Query: 38  ESTEVFFCKP---ADDYLPDPEAVFITGI---TPQKALRDGVVEAEFSRRIHQF-FSVPN 90
           +  E F  +     D   P  +A         TP+      +  A   +R ++F  + P 
Sbjct: 238 DRFERFMSQQFSDQDGKAPKCKAFLRHKTFIVTPELLRAAKIPYATMIQRPNEFIITFPR 297

Query: 91  TCIIGYNNIRFDDYYSRNIFYR---NFYDSYRWSWDNGNSRWDLLDVMRAIYAFS--PDG 145
              +G+N        +     R      D+     +  + + D+   M         P  
Sbjct: 298 GYHMGFNLDYNLAESTNFATDRWIDYGKDAVLCECNKSSVKIDMHCFMSQYRQHEVIPWV 357

Query: 146 IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKK---------- 195
             W    D       +  A  N      +    +    +L  V  +              
Sbjct: 358 DYWYCPKDDKKGVAKKRKAQENRSPAKRSRLGVSSCSDSLESVAEVSSFMRSLPGYTMDR 417

Query: 196 ---PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDS 252
                 ++ L   +NK    +L     +     +   +   RS       V         
Sbjct: 418 VEFRPDYDELLKLQNKKVSFELRSNNRVN--FFLERRYNELRSVEWPHCSVCQ------Y 469

Query: 253 VIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289
               +++        +    +   +F+   EL     
Sbjct: 470 FQPIHMTTRNAELPVMSRRLIPSSVFSKTPELTDPEK 506


>gi|256789880|ref|ZP_05528311.1| hypothetical protein SlivT_35823 [Streptomyces lividans TK24]
 gi|289773763|ref|ZP_06533141.1| predicted protein [Streptomyces lividans TK24]
 gi|289703962|gb|EFD71391.1| predicted protein [Streptomyces lividans TK24]
          Length = 129

 Score = 39.8 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 11/28 (39%)

Query: 8  YDYETFGRDVALDRPAQFAGVRVDRQWE 35
           D ET G     DR    A V +D   E
Sbjct: 35 VDVETSGLVPRRDRVLSVAVVTLDADGE 62


>gi|319792320|ref|YP_004153960.1| exonuclease rnase t and DNA polymerase iii [Variovorax paradoxus
           EPS]
 gi|315594783|gb|ADU35849.1| Exonuclease RNase T and DNA polymerase III [Variovorax paradoxus
           EPS]
          Length = 198

 Score = 39.8 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 25/134 (18%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
            + V  D E  G D   +   + A V                 +     L   ++  +  
Sbjct: 21  QNLVWLDCEMSGLDPEKEFLLEIAVVVTGPDLTP---------RIDGPVLVIHQSDAVLD 71

Query: 61  ---------TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYS 106
                     G +    K     + EA   +++ +F +     +   +  N I  D  + 
Sbjct: 72  AMDAWNKGTHGRSGLIDKVKASTLDEAAAEQQLLEFIAKYIPRSGSPMCGNTIGQDRRFL 131

Query: 107 RNIFYRNFYDSYRW 120
                +     +  
Sbjct: 132 VKFMPKLEAYFHYR 145


>gi|307110876|gb|EFN59111.1| hypothetical protein CHLNCDRAFT_137905 [Chlorella variabilis]
          Length = 357

 Score = 39.8 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 56/207 (27%), Gaps = 40/207 (19%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC----KPADDYLPDPEAVFIT 61
           ++ D ET G     D   Q A   ++    ++ +  +  C     PA        A  + 
Sbjct: 111 LVLDSETTGLS-GRDYIHQLA--VLNLSSCQLLTALLRTCPRTTGPAAAKASPAGAGSVC 167

Query: 62  GITPQKALRDGVV-EAEFSRRIHQFFS-----------VPNTCIIGYNNIRFDDYYSRNI 109
           G   Q           + +  +H F +            P   ++  +N  FD       
Sbjct: 168 GANNQALHDPNRPTFGQLAPLLHAFIAGGGVTSGSGGHQPAPPLVVGHNAPFDARMLIAE 227

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
           + R                 D L + R                    + K   L    G+
Sbjct: 228 WGRRDLP-----VPREWRLLDTLPLAREC-------------VPDCANHKQGTLRQRFGV 269

Query: 170 ---EHVNAHDAKADVYATLALVWLIRE 193
                   HDA +DV     L+  + +
Sbjct: 270 TLAPGEAEHDAGSDVTVLAQLLPHLVQ 296


>gi|29611363|gb|AAO91876.1| putative oligoribonuclease [uncultured bacterium]
          Length = 170

 Score = 39.8 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 31/124 (25%), Gaps = 21/124 (16%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---------IT 61
           E  G     DR  + A V  D Q   +    V            P+AV            
Sbjct: 2   EMSGLYPDTDRVLEIAIVVTDSQLVTVAEAPVKIVH-------QPDAVLDRMDSWNKSTH 54

Query: 62  GIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
             +    K       E E    +  F       NT  +  N+I  D  +      +    
Sbjct: 55  RKSGLIDKVKAAKQSEVEVEAELIAFLLQYLPENTSPMCGNSICQDRRFLARYMPKLEAF 114

Query: 117 SYRW 120
            +  
Sbjct: 115 FHYR 118


>gi|296118028|ref|ZP_06836610.1| DNA polymerase III, epsilon subunit [Corynebacterium ammoniagenes
          DSM 20306]
 gi|295968914|gb|EFG82157.1| DNA polymerase III, epsilon subunit [Corynebacterium ammoniagenes
          DSM 20306]
          Length = 487

 Score = 39.8 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIE-STEVFFCKPADDYLPDPEAVFITGITPQKALRD 71
           G   A  R   F  V  +   E  E +  VF    + D  P P+     G++ ++    
Sbjct: 6  SGIHPATSRLISFDAVTYNAAGEIGEATFMVF----SPDSDPGPK--HQHGLSQEEVA-A 58

Query: 72 GVVEAEFSRRIHQFFSVPNTCI 93
          G+  ++  +R+ +        +
Sbjct: 59 GIPFSKALKRVDRILDDRTLIV 80


>gi|228998298|ref|ZP_04157893.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides
           Rock3-17]
 gi|229005781|ref|ZP_04163479.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides
           Rock1-4]
 gi|228755457|gb|EEM04804.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides
           Rock1-4]
 gi|228761450|gb|EEM10401.1| Exonuclease RNase T and DNA polymerase III [Bacillus mycoides
           Rock3-17]
          Length = 255

 Score = 39.8 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 44/178 (24%), Gaps = 21/178 (11%)

Query: 25  FAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83
              ++V+      I                      +TGIT Q      V   E   R  
Sbjct: 4   IGAIKVEASTVRIIGQFSSL---VKPTAPLTRHTTKLTGITKQDLKEVEV-FPEVMERFL 59

Query: 84  QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143
           QF        +     + D  +       +  +           ++DL   +   Y    
Sbjct: 60  QF---AGDDYMFITWGKEDYKFLAQDCKLHHIECPNIEN---ERKFDLQKFVFQAY---- 109

Query: 144 DGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEY 201
                        S K      +   E    H A AD   TL +   + ++K     Y
Sbjct: 110 -----DQLFIHTPSLKFAVEQFSLEWE-GKQHRAFADAKNTLNIFLKVFKEKDIYKRY 161


>gi|221503729|gb|EEE29413.1| trichohyalin, putative [Toxoplasma gondii VEG]
          Length = 2088

 Score = 39.8 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 263 RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHK 322
              +     +  +      +E KG      K V   +  +    +  +K   E      +
Sbjct: 429 EEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQE 488

Query: 323 RCLENLTL-LRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAP 381
              + +    ++    R+ ++    +      + ++  + +      + +   ++ R   
Sbjct: 489 AIEKAVEEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEM 548

Query: 382 EQLS--TLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK--KMLTRSRIEEYK 437
           E+     +     + R                  E+E+++W +HR   +   +  IE+  
Sbjct: 549 EKGKQEAIEKAVEEERKKM---------------EQEREEWQKHRAEEEKGKQEAIEKAV 593

Query: 438 NK----LQSLSGE---YKGDEGKEGLINALYEYLQW 466
            +    ++    E   ++ +E K     A+ + ++ 
Sbjct: 594 KEERKKMEQEREEWQKHRAEEEKGKQ-EAIEKAVEE 628


>gi|254281534|ref|ZP_04956502.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           NOR51-B]
 gi|219677737|gb|EED34086.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
           NOR51-B]
          Length = 221

 Score = 39.8 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 53/185 (28%), Gaps = 20/185 (10%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            F++ D E    +VA         V ++     + S +    +         ++  I  +
Sbjct: 40  KFLVCDAEMSALEVAEGELLSLGWVVIEAGEIVLASAQHHLIRNERSV---GQSAVIHQL 96

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
              +    G  E      +    +     +  +++   D  +      + F         
Sbjct: 97  RDCELSAAGDTE----TALRALITAAREAVWVFHHASLDVAFLDRACQQVFG-------- 144

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
                  LL  +          ++   +  G    +LQ       +   +AH+A  D  A
Sbjct: 145 -----APLLVPVVDTLLLEHRLLERRQQTIGPGDLRLQACRDRYHLPPHDAHNALVDAMA 199

Query: 184 TLALV 188
           T  L+
Sbjct: 200 TAELL 204


>gi|156538236|ref|XP_001602268.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 1536

 Score = 39.8 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 21/235 (8%)

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A H          N          LD  +L   +               ++ H NK P +
Sbjct: 186 AGHDIKDQKYANDNWDKSTSQEDQLDESELELVMK-------HQPRGRGRKKHNNKSPEV 238

Query: 304 MPID----YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
           M +     +      E   +   +   +  +L     +       + +    S +++   
Sbjct: 239 MAMRRRKIWMMMSKKELGKVQRAKTNNHKEMLISCKKVAQHCMKYWRQKAMQSQKNMKET 298

Query: 360 LYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL--PELFFRYRARNFPHTLSEKE 416
           ++         +    R  R   E    L     ++R    EL    R +   + L  + 
Sbjct: 299 IWRAKRLTREMQSYWKRYDRVERETRKRLEKEAEEQRKMDVELIEAKRQQRKLNFLITQ- 357

Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
            + +     + L ++  E      + L    + DE K   +  + +Y   ++ ++
Sbjct: 358 TELYAHFMSRKLGKASPE------EQLRILNQLDEEKNPRLAGIDDYDSEIMKQK 406


>gi|302508317|ref|XP_003016119.1| hypothetical protein ARB_05516 [Arthroderma benhamiae CBS 112371]
 gi|291179688|gb|EFE35474.1| hypothetical protein ARB_05516 [Arthroderma benhamiae CBS 112371]
          Length = 172

 Score = 39.8 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 30/121 (24%), Gaps = 17/121 (14%)

Query: 13  FGRDVALDRPAQFAGVRVDRQWEKIE---------STEVFFCKPADDYLPDPEAVFITGI 63
            G D A D   Q      D Q   +E           +    +     +       +T  
Sbjct: 2   TGLDPANDHILQVCCFITDAQLNLLEPEGFEAVVHQPQDVLDRMNAWCIDTHGRSGLT-- 59

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
                L       E +  +  +         T ++  N++  D  +     Y    D   
Sbjct: 60  --AAVLSSSTTAEEVACDLLAYIKQYVPTHRTALLAGNSVHADRAFLAKPPYAQVLDWLH 117

Query: 120 W 120
           +
Sbjct: 118 Y 118


>gi|116252858|ref|YP_768696.1| hypothetical protein RL3116 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257506|emb|CAK08603.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 204

 Score = 39.8 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 23/187 (12%)

Query: 22  PAQFAGVRVDRQWE--KIESTEVFFCKPADD----YLPDPEAVFITGITPQKALRDGVVE 75
            AQ   V++  + E   +++ +  + +P D     Y  DP    +TGIT +     GV  
Sbjct: 32  IAQIGAVKLGLEGEFPILDTYKS-YVRPIDRFGKRYPLDPYFTNLTGITEEDIDTHGVAL 90

Query: 76  AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVM 135
            +    + +F    +     ++  + +        Y                R+D    +
Sbjct: 91  QDALSGVDRF----SGGARFWSWGKDELNMLAISCYVAGVQP-----AIPARRFDNAVKL 141

Query: 136 RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKK 195
                   +            S KL D            HD   D  +    +  + +  
Sbjct: 142 LVAAGMPIE------DLAKTPSNKLADYYQVEHPPLRG-HDGLDDALSISYALQHLMKIA 194

Query: 196 PKLFEYL 202
                  
Sbjct: 195 KLQPAVF 201


>gi|237835003|ref|XP_002366799.1| trichohyalin, putative [Toxoplasma gondii ME49]
 gi|211964463|gb|EEA99658.1| trichohyalin, putative [Toxoplasma gondii ME49]
          Length = 2238

 Score = 39.8 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 263 RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHK 322
              +     +  +      +E KG      K V   +  +    +  +K   E      +
Sbjct: 429 EEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQEREEWQKHRAEEEKGKQE 488

Query: 323 RCLENLTL-LRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAP 381
              + +    ++    R+ ++    +      + ++  + +      + +   ++ R   
Sbjct: 489 AIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKLEEERNEWKMHRAEM 548

Query: 382 EQLS--TLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK--KMLTRSRIEEYK 437
           E+     +     + R                  E+E+++W +HR   +   +  IE+  
Sbjct: 549 EKGKQEAIEKAVEEERKKM---------------EQEREEWQKHRAEEEKGKQEAIEKAV 593

Query: 438 NK----LQSLSGE---YKGDEGKEGLINALYEYLQW 466
            +    ++    E   ++ +E K     A+ + ++ 
Sbjct: 594 KEERKKMEQEREEWQKHRAEEEKGKQ-EAIEKAVEE 628


>gi|189205366|ref|XP_001939018.1| oligoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187986117|gb|EDU51605.1| oligoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 196

 Score = 39.8 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 11/35 (31%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
           V  D E  G +  +D     A    D     ++ 
Sbjct: 9  LVWIDCEMTGLNTDIDTIMSLAVFVTDADLNFLDE 43


>gi|152999287|ref|YP_001364968.1| oligoribonuclease [Shewanella baltica OS185]
 gi|151363905|gb|ABS06905.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS185]
          Length = 204

 Score = 39.8 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 38/143 (26%), Gaps = 23/143 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           M   F+  D ET G +  LD            + A +  D +  ++           D++
Sbjct: 1   MEQFFLFGDLETGGLNGRLDNGMLGMEYYPIFELAFIVTDSELNQVGEALHIVVHQDDEH 60

Query: 52  LP--DPEAVFITGITP--QKALRDGVVEAEFSRRIHQFFSVPN----------TCIIGYN 97
           +      A+ +   +          V  A+  + + +                  +   N
Sbjct: 61  IARSHEWAIDVHTKSGLLAAVRASSVSLAQAEQMVLEHLKALGIPKHDRKAKTGVVFAGN 120

Query: 98  NIRFDDYYSRNIFYRNFYDSYRW 120
           +I  D  +            +  
Sbjct: 121 SIMLDRSFIMCQMPELHEYMHYR 143


>gi|167949794|ref|ZP_02536868.1| exonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 60

 Score = 39.8 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 264 VFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDY 308
              +LD  Q+ +RLFT   +L +G+  +P+K VHLNKCP+L+P + 
Sbjct: 2   PLLELDDEQIHQRLFTPTADLPEGVERIPLKTVHLNKCPVLVPTNT 47


>gi|71656904|ref|XP_816992.1| hypothetical protein Tc00.1047053507491.100 [Trypanosoma cruzi
           strain CL Brener]
 gi|70882156|gb|EAN95141.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 939

 Score = 39.8 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 54/171 (31%), Gaps = 12/171 (7%)

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           N    L           +      +   E   +L+    + +       K   ++ +   
Sbjct: 265 NTQQSLREEQERIISERQEIEETKRTLEE--KILQLGEKITNEQMECEKKIQETNQRHAR 322

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
                    +   + ++        +L        D  +  L  R R +   HTL ++  
Sbjct: 323 KMDELVAKNEELSRRLED----DSSKLLERRQELEDH-VRSLAERLRCQEETHTLEQQNL 377

Query: 418 QD-WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ +     +   R  ++   N+ + L  E++ D  ++ L+    + +Q +
Sbjct: 378 KETYKREVSE--LREELQAMMNQREQLEEEHEKD--RQKLLKNEEKLIQSL 424


>gi|116199179|ref|XP_001225401.1| hypothetical protein CHGG_07745 [Chaetomium globosum CBS 148.51]
 gi|88179024|gb|EAQ86492.1| hypothetical protein CHGG_07745 [Chaetomium globosum CBS 148.51]
          Length = 626

 Score = 39.8 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 20/178 (11%)

Query: 3   NHFVIYDYETF----GRDVALD--RPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDP 55
           + +V+    T     G  V  D     +   + +D    E++    V   KP +     P
Sbjct: 12  DRYVVVHVATTCDEHGVYVTKDSAEVIELGWILLDANTLEELHRESVL-VKPVN-TPITP 69

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T +T +     G    +   R   F S   T        +  D+    +   +  
Sbjct: 70  LCTSLTTLTWEHVRNAG-TFRDAVNRFDAFASEHLTS-------QNLDFVFVTLEAWDLR 121

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIE 170
                   + +            +    +  +W      +  F    L ++  A  +E
Sbjct: 122 VQLPREARDKSVVLPPYLQHSRAFELRTEYQRWQQHHPESLPFGPSLLTNICAALEVE 179


>gi|332018384|gb|EGI58978.1| Putative oligoribonuclease [Acromyrmex echinatior]
          Length = 228

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 29/125 (23%), Gaps = 7/125 (5%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFI 60
            H V  D E  G +V      + A    D Q E             D  L          
Sbjct: 52  KHIVWLDMEMTGLEVETCHILEVACFITDEQLELASDYLNIVVHQPDKVLENMSDWCKVQ 111

Query: 61  TGIT--PQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFY 115
              +    +         E  +R   F         C +  N++  D  + +        
Sbjct: 112 HKKSGLINECRLSKTTLEEAQQRTLNFLENHVPKGACPLAGNSVYMDRIFLKKYMPLIDN 171

Query: 116 DSYRW 120
             +  
Sbjct: 172 YLHYR 176


>gi|313669465|ref|YP_004049891.1| exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156662|gb|ADR35338.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 174

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 11/147 (7%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +I D+ET   ++      + A  R+ R+   +   ++   ++     +Y  +P A+ +  
Sbjct: 2   IILDFETNSANI--HDVIEVAAFRIKREEGVYVIADTFHRYYFS---EYEVNPYALAVHK 56

Query: 63  ITPQKAL--RDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           ++PQ+    R  V  AE      +F         +  +NI F+  +   +     +    
Sbjct: 57  LSPQRIERLRANVDYAEHFAEDSEFVEFCQGAKTLIAHNITFELRHLGELVRFEKHFCTM 116

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGI 146
            S        ++   ++          
Sbjct: 117 KSNKKIVGAINIRGSLKNPKLLETCRH 143


>gi|322787625|gb|EFZ13665.1| hypothetical protein SINV_06869 [Solenopsis invicta]
          Length = 254

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 50/209 (23%), Gaps = 24/209 (11%)

Query: 1   MTNHF---VIYDYETFG-----RDVALDRPAQF-AGVRVDRQWEKIESTEVFFCKPADDY 51
           M   F   ++ D+E                 +    V     W+  +     + KP    
Sbjct: 34  MVQKFEYLLVLDFEATCERYQVIKPQ--EIIELPCAVLSTHDWKLKDMFHS-YVKPRVHP 90

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
              P    +TGI  +          +      ++ +             FD        +
Sbjct: 91  TLTPFCTELTGIMQETVDGQPY-FVDVFPIFCEWLTKRG---------YFDRP--EKSSF 138

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
               +    +        D +        +      +              LA  N    
Sbjct: 139 VTCGNWDLKTMLPNQCDLDGIAPPDQFKQWIDLKHMFCESTGYYPKSLKDMLARLNMPLK 198

Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFE 200
              H    DV   ++++  ++EK    F+
Sbjct: 199 GRLHSGIDDVKNMISIMLALKEKYNTQFK 227


>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
 gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
          Length = 981

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 12/64 (18%)

Query: 5   FVIYDYETFGRDVALDRPA---------QFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
           FV  D ET G D                +   V +  +        +F      D +P P
Sbjct: 393 FVAVDTETTGLDPMQADIVGFSLATAPNEACYVPLSHKG---GDEGLFSEGLLPDQIPIP 449

Query: 56  EAVF 59
           +AV 
Sbjct: 450 DAVA 453


>gi|225028307|ref|ZP_03717499.1| hypothetical protein EUBHAL_02579 [Eubacterium hallii DSM 3353]
 gi|224954353|gb|EEG35562.1| hypothetical protein EUBHAL_02579 [Eubacterium hallii DSM 3353]
          Length = 210

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 50/182 (27%), Gaps = 17/182 (9%)

Query: 14  GRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDG 72
           G++        Q   V +D ++++I +    +  P    L D     +TGI   +     
Sbjct: 10  GKNYKYASEIIQVGAVLLDEEYKEIGT-LCQYVHPEFGIL-DYFITNLTGIEKGQIKNAP 67

Query: 73  VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLL 132
               +    +  +       +  ++   +       I  +   D             D  
Sbjct: 68  K-LKDALIHMADWLGEREYKVFAWSKSDY-WQLDHEIKSKKLNDEKLDELMKPERWVDYQ 125

Query: 133 DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIR 192
           ++    Y F                   + L L +       HD   D + T  L+  + 
Sbjct: 126 EIFGKKYNFEQAVGL------------QEALMLCDIEPDGRMHDGLDDAWNTARLIEKLE 173

Query: 193 EK 194
           + 
Sbjct: 174 KN 175


>gi|332995058|gb|AEF05113.1| hypothetical protein ambt_18085 [Alteromonas sp. SN2]
          Length = 176

 Score = 39.4 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 6/82 (7%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
          +I D E  G       P +    + D      +S        A       EA  + G++ 
Sbjct: 11 IILDIEASGL-AEPSYPIEIGFYKSDS-----DSFCTLIKPAAHWNYWSAEAEKLHGLSQ 64

Query: 66 QKALRDGVVEAEFSRRIHQFFS 87
                G      +  +++  +
Sbjct: 65 DIITHRGRSTRAIAHELNRLLA 86


>gi|330797762|ref|XP_003286927.1| hypothetical protein DICPUDRAFT_77789 [Dictyostelium purpureum]
 gi|325083093|gb|EGC36555.1| hypothetical protein DICPUDRAFT_77789 [Dictyostelium purpureum]
          Length = 401

 Score = 39.4 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 9/68 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  I D ET G   +     + +   ++         E F+ K        PE+  I  +
Sbjct: 176 NIFILDSETTGL-TSNAEIIELSCACLNG--------EAFYRKSNPTIPITPESTKINNL 226

Query: 64  TPQKALRD 71
           T + +   
Sbjct: 227 TSKDSAGH 234


>gi|326504778|dbj|BAK06680.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 343

 Score = 39.4 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 50/175 (28%), Gaps = 10/175 (5%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
              +F  V VD     IES    + +P    +       +TGI  +     GV   E   
Sbjct: 38  EIIEFPAVLVDGATGCIESAFRRYVRPKHHPVLTQFCRELTGIRQEDV-DGGVDLGEAL- 95

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
            +H  +    T   G N                  D    +      R+  ++       
Sbjct: 96  WLHDAWLKAATAGAG-NRRSGRLAVVTWG------DWDCRTMLEFECRFKGIEKPSYFDQ 148

Query: 141 FSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATLALVWLIREK 194
           +    + +     G     LQ+   A G++     H    D   T  L+  I  +
Sbjct: 149 WINLRVPFQVALGGGGRVNLQEAVRAAGLDWEGRLHCGLDDALNTARLLAEIMRR 203


>gi|307195065|gb|EFN77118.1| hypothetical protein EAI_12370 [Harpegnathos saltator]
          Length = 541

 Score = 39.4 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 10/59 (16%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
            VI+D ET GR    D   Q A V  D          VF          +  A  I G+
Sbjct: 480 IVIFDLETSGRGRNAD-ILQLAAVAND---------NVFSVYIEPTQAINKSASEINGL 528


>gi|323518467|gb|ADX92848.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 226

 Score = 39.4 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 18/108 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD-RQWEKI----ESTEVFFCKPADDYLPDPEAVFI 60
           +I D ET   +     P + A         + +    E    F+  P      D EA+ +
Sbjct: 4   IILDTET---NKLNGYPIEIAYAPFSLENGQLLVHKDEVFNRFYSCPEP---IDLEAMAV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
             I           E+       +F        +G+N        ++ 
Sbjct: 58  HNIIEADIEGQPSCESFRLPEGVEFI-------VGHNIDYDIKALNKC 98


>gi|268558090|ref|XP_002637035.1| Hypothetical protein CBG09528 [Caenorhabditis briggsae]
          Length = 211

 Score = 39.4 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 11/127 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPAD-----DYLPDPE 56
              +  D E  G +V      + A +  D +   I +  ++   +P +     +  P   
Sbjct: 33  QRIIWIDCEMTGLNVEKQTLCEIAVIVTDSELNTIATGPDIVIHQPKEVLDNMEEWPRKT 92

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRN 113
            +   G+  +K +       +    + +F     +P    I  N+I  D  + +    + 
Sbjct: 93  FLE-NGL-MEKIIDSKYSMNKAEDEVIEFLKLHALPGKSPIAGNSIYMDRLFIKKYMPKL 150

Query: 114 FYDSYRW 120
              ++  
Sbjct: 151 DEFAHYR 157


>gi|326529429|dbj|BAK04661.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 345

 Score = 39.4 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 51/175 (29%), Gaps = 10/175 (5%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
              +F  V VD    +IES    + +P    +       +TGI  +     GV   E   
Sbjct: 38  EIIEFPAVLVDGATGRIESAFRRYVRPKHHPVLTQFCRELTGIRQEDV-DGGVDLGEAL- 95

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
            +H  +    T   G N                  D    +      R+  ++       
Sbjct: 96  WLHDAWLKAATAGAG-NRRSGRLAVVTWG------DWDCRTMLEFECRFKGIEKPSYFDQ 148

Query: 141 FSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATLALVWLIREK 194
           +    + +     G     LQ+   A G++     H    D   T  L+  I  +
Sbjct: 149 WINLRVPFQVALGGGGRVNLQEAVRAAGLDWEGRLHCGLDDALNTARLLAEIMRR 203


>gi|326508370|dbj|BAJ99452.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 343

 Score = 39.4 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 51/175 (29%), Gaps = 10/175 (5%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
              +F  V VD    +IES    + +P    +       +TGI  +     GV   E   
Sbjct: 38  EIIEFPAVLVDGATGRIESAFRRYVRPKHHPVLTQFCRELTGIRQEDV-DGGVDLGEAL- 95

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
            +H  +    T   G N                  D    +      R+  ++       
Sbjct: 96  WLHDAWLKAATAGAG-NRRSGRLAVVTWG------DWDCRTMLEFECRFKGIEKPSYFDQ 148

Query: 141 FSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATLALVWLIREK 194
           +    + +     G     LQ+   A G++     H    D   T  L+  I  +
Sbjct: 149 WINLRVPFQVALGGGGRVNLQEAVRAAGLDWEGRLHCGLDDALNTARLLAEIMRR 203


>gi|311696704|gb|ADP99577.1| conserved hypothetical protein [marine bacterium HP15]
          Length = 177

 Score = 39.4 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 7/81 (8%)

Query: 7  IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFITGITP 65
            D+E    D+    P +      D       +   +   P          A  I GI+ 
Sbjct: 8  FIDFEASSLDLIASYPIEVGICMPD------GTLHSWLISPHVLWQDWSQSAEQIHGISR 61

Query: 66 QKALRDGVVEAEFSRRIHQFF 86
          +    DG+  +E +  +++  
Sbjct: 62 ETLEADGIAVSEVASALNELL 82


>gi|254458573|ref|ZP_05071998.1| exonuclease superfamily protein [Campylobacterales bacterium GD 1]
 gi|207084881|gb|EDZ62168.1| exonuclease superfamily protein [Campylobacterales bacterium GD 1]
          Length = 175

 Score = 39.4 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +I D+ET   ++      + A  RV   + ++   +S   ++     +Y  +P A+ +  
Sbjct: 2   IILDFETNSANI--HDVIEVAAFRVEKVNDEYVVKDSFHRYY---LSEYEVNPHALAVHK 56

Query: 63  ITPQKAL--RDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYY 105
           ++P +    R      E      +F     +   +  +NI F+  +
Sbjct: 57  LSPDRLERLRAKATYEEHFEDDTEFVEFCKDAKTLVAHNISFELRH 102


>gi|322826435|gb|EFZ31050.1| hypothetical protein TCSYLVIO_2642 [Trypanosoma cruzi]
          Length = 939

 Score = 39.4 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 15/180 (8%)

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           N    L           +      +   E   +L+    + +       K   ++     
Sbjct: 265 NTQQSLREEQERIISERQELEETKRTLEE--KILQLGEKITNEQMECEKKIQETNQCHAR 322

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
                    +   + ++        +L        D  +  L  R R +   HTL E+  
Sbjct: 323 KMDELVAKNEELSRRLED----ESSKLQERRQELEDH-VRSLAERLRCQEETHTLEEQNL 377

Query: 418 QD-WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKE-----GLINALYEYLQWVIPKE 471
           ++ +     +   R  ++   N+ + L  E++ D  K       LI +L + ++ V  ++
Sbjct: 378 KETYKREVSE--LREELQAMMNQREQLEEEHEKDRQKLLKNEEKLIQSLRQAVEEVRQEK 435


>gi|260551423|ref|ZP_05825623.1| DNA polymerase III [Acinetobacter sp. RUH2624]
 gi|260405586|gb|EEW99078.1| DNA polymerase III [Acinetobacter sp. RUH2624]
          Length = 226

 Score = 39.4 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 18/108 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD-RQWEKI----ESTEVFFCKPADDYLPDPEAVFI 60
           +I D ET   +     P + A         + +    E    F+  P      D EA+ +
Sbjct: 4   IILDTET---NKLNGYPIEIAYAPFSLENGQLLVLKDEVFNRFYSCPEP---IDLEAMAV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
             I           E        +F        +G+N        ++ 
Sbjct: 58  HNIIEADIEGQPSCETFRLPEGVEFI-------VGHNIDYDVKALNKC 98


>gi|118400656|ref|XP_001032650.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89286993|gb|EAR84987.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 215

 Score = 39.4 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 60/207 (28%), Gaps = 10/207 (4%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFI 60
            +I D+E        +      +F  V +D +  + ++     + KP+ +         +
Sbjct: 14  LLILDFEATCEKNVKLECQEIIEFPVVVLDVKNQQILDVFFHHYIKPSVNPKLTAFCTEL 73

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           TGI  ++   +G+   E   ++  F          +  I   D+   N   R        
Sbjct: 74  TGIKQEQV-DNGISLQEALAQLTLFLEQNKLIGSSFTFITCGDFDLGNCLRREALYKKIE 132

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                 +  ++  V    Y             D      +  L   N     + H    D
Sbjct: 133 IPQYLKNYINIKKVFPKQYYPKQKKEGDNRLPDM-----VGMLQGLNLKLDGHHHSGIDD 187

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
                 +   + +K  K  + +  + N
Sbjct: 188 SKNIAKIALTLLQKGFKFNKNMRAFSN 214


>gi|10177611|dbj|BAB10958.1| unnamed protein product [Arabidopsis thaliana]
          Length = 782

 Score = 39.4 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 15/152 (9%)

Query: 25  FAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83
              V  DR  + + +           D         ITG+T +   R  +  A+  +++ 
Sbjct: 165 VGAV--DRDLKVVLDKF------VKPDKPVIDYKTDITGVTAEDLERATLSVADIQKKLR 216

Query: 84  QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW----DNGNSRWDLLDVMRAIY 139
           +F SV    I+  + +  D    R    R    SY + +           + L       
Sbjct: 217 RFLSV--GTILVGHGLHNDLQVLRIDHARVIDTSYVFEFVDAPKTQRPSLNNLCKASMRQ 274

Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
               DG       D A + KL   A+  G   
Sbjct: 275 EVRMDGAAHNCVHDAAAAMKLVLAAVEKGAAT 306


>gi|281202353|gb|EFA76558.1| putative RNase III [Polysphondylium pallidum PN500]
          Length = 164

 Score = 39.4 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 5  FVIYDYETF---GRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V+ D+E     G  +A     +F  V V+    + +++    + KP  +         +
Sbjct: 8  IVVLDFEATCENGTKIAKQEIIEFPSVIVEVETCKIVDTFRE-YVKPVHNPRLSAFCTEL 66

Query: 61 TGI 63
          TGI
Sbjct: 67 TGI 69


>gi|325265748|ref|ZP_08132436.1| epsilon subunit family exonuclease [Kingella denitrificans ATCC
          33394]
 gi|324982788|gb|EGC18412.1| epsilon subunit family exonuclease [Kingella denitrificans ATCC
          33394]
          Length = 43

 Score = 39.4 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 6  VIYDYETFGRDVALDRPAQFAGV 28
          VI D ET G +   DR  + A +
Sbjct: 20 VILDLETTGGNFQRDRITEIAFL 42


>gi|326499798|dbj|BAJ90734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 343

 Score = 39.4 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 50/175 (28%), Gaps = 10/175 (5%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
              +F  V VD     IES    + +P    +       +TGI  +     GV   E   
Sbjct: 38  EIIEFPAVLVDGATGCIESAFRRYVRPKHHPVLTQFCRELTGIRQEDL-DGGVDLGEAL- 95

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYA 140
            +H  +    T   G N                  D    +      R+  ++       
Sbjct: 96  WLHDAWLKAATAGAG-NRRSGRLAVVTWG------DWDCRTMLEFECRFKGIEKPSYFDQ 148

Query: 141 FSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATLALVWLIREK 194
           +    + +     G     LQ+   A G++     H    D   T  L+  I  +
Sbjct: 149 WINLRVPFQVALGGGGRVNLQEAVRAAGLDWEGRLHCGLDDALNTARLLAEIMRR 203


>gi|290462141|gb|ADD24118.1| Oligoribonuclease, mitochondrial [Lepeophtheirus salmonis]
          Length = 216

 Score = 39.4 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 17/193 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  V  D E  G D+ +D   + A +  D+  +  +          D  L   +A+  TG
Sbjct: 37  DRIVWIDCEMTGLDLEVDVLMEVAVIITDKNLKPTKEGLNIVIHQPDSVL---DAM--TG 91

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
              +   + G+  A    +I    +  + C        F        F R         +
Sbjct: 92  FPKESHAKTGLTAACRMSKIDVKQAENDIC-------NFIKRECGTTFGRPLLAGNSVGF 144

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           D    R  +  V   ++    D        +     KL+        +    H A  D+ 
Sbjct: 145 DAKFLRKYMPSVTDILHYRIIDVSTIHECYNLWDREKLK-----FCPKKRKTHRALDDIL 199

Query: 183 ATLALVWLIREKK 195
            ++  + + +   
Sbjct: 200 ESIEQMKVFKRIM 212


>gi|195161924|ref|XP_002021806.1| GL26302 [Drosophila persimilis]
 gi|194103606|gb|EDW25649.1| GL26302 [Drosophila persimilis]
          Length = 335

 Score = 39.4 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 22/136 (16%)

Query: 4   HFVIYDYETFGRDVALDR---PAQFAGVRVDRQW-----------------EKIESTEVF 43
            F + D ET       +      +      +                             
Sbjct: 20  TFAVLDLETTNLPANNNNRVGITELCIYAFEAALLKQNGTKGSGENKVPVPPLPRVVHKL 79

Query: 44  FCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRF 101
                   +  P+A   TG+      R+  ++   ++ I  F     +  C++ +N   F
Sbjct: 80  NVLFQPSMMVHPDAERFTGLNNYILERESKLDENSAQMILNFLKHLPSPVCLVAHNGWHF 139

Query: 102 DDYYSRNIFYRNFYDS 117
           D    R +F +   + 
Sbjct: 140 DFPIVRKVFAKLNLEF 155


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score = 39.4 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 9/59 (15%)

Query: 2   TNHFVIYDYETFGRDVALDRP--AQFAG-----VRVDRQWEKIESTEVFFCKPADDYLP 53
           T+  V  D ET G D         Q A      + +  ++  I   E          +P
Sbjct: 65  THTVVGLDIETTGLDPHTSEISLIQIAAPNRPVILI--EFRSITHKESLRRFIEHHKIP 121


>gi|268577631|ref|XP_002643798.1| Hypothetical protein CBG02010 [Caenorhabditis briggsae]
          Length = 334

 Score = 39.4 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 12/138 (8%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEA 57
            + VI   +T  ++   D      Q + V VD +   I    +F  +  P  +       
Sbjct: 44  QNLVILKVKTTSQEKNYDFPSEVIQISAVVVDVKNNAIRENMMFNEYVMPVINSKLTENC 103

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNF-- 114
           V  TG+T +            + +   +        +     +       + + Y+    
Sbjct: 104 VKTTGVTQENVNNA-RSFRIVNEKFSNWLESNQLVGVKSAFVMDSRVDIWQRLQYQCALI 162

Query: 115 ---YDSYRWSWDNGNSRW 129
                +    W N  +  
Sbjct: 163 GVRMPARFRQWINLWTVC 180


>gi|257784310|ref|YP_003179527.1| hypothetical protein Apar_0505 [Atopobium parvulum DSM 20469]
 gi|257472817|gb|ACV50936.1| hypothetical protein Apar_0505 [Atopobium parvulum DSM 20469]
          Length = 322

 Score = 39.4 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 45/199 (22%), Gaps = 22/199 (11%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-------- 59
            D ET  R   L             ++  +        +P   Y   PE           
Sbjct: 136 IDIETTSRFPELGYIVNVGF-----EFWNLGR-NTVPVEPHTAYFGIPEIYKEKGVPLAD 189

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
           I  IT +          +  +      +         +N  F+D      ++    D Y 
Sbjct: 190 IHQITWKDVEGK-KSFRDDKKAQEALLTTMKKIPFMAHNAAFED-----SWFMFNIDGYA 243

Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
            +   G  +  ++D         P+    P     A              +    H    
Sbjct: 244 EARKAG--KIIVIDSRDICRRLDPEIRSLPRESSPAALENWARRRHTLAADEKERHLGLE 301

Query: 180 DVYATLALVWLIREKKPKL 198
           DV   +  V          
Sbjct: 302 DVDLMIRTVQAEFADHNMF 320


>gi|320164135|gb|EFW41034.1| smarca2 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1466

 Score = 39.4 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 21/144 (14%)

Query: 326 ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRT--APEQ 383
           +    L  +   +        +  T   +               ++          A  Q
Sbjct: 301 KRAKKLAVREPKKTELLEKQQRAETERRRHAKHFERLNAILSHAQRFR-DFHEAVHAKVQ 359

Query: 384 LSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
               +L   + RL +   R           + E +   + R + L     E Y+  + S 
Sbjct: 360 RIGRDLQLHNERLEK--QR-----------KAESERLEKERMRRLMEEDEEGYRKLIDS- 405

Query: 444 SGEYKGDEGKEGLINALYEYLQWV 467
               + D+    L+N   EY++ +
Sbjct: 406 ----EKDKRLSYLLNQTDEYIEKL 425


>gi|315252572|gb|EFU32540.1| exonuclease [Escherichia coli MS 85-1]
          Length = 489

 Score = 39.0 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 35/141 (24%), Gaps = 33/141 (23%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQ-----------------WEKIESTEVFFCKPADD 50
            D ET G++           +  D Q                    I+  +         
Sbjct: 311 IDLETMGKNPDAP-IISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDR-DTIKWWLKQS 368

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY---NNIRFDDYYSR 107
                  +     T +      +   +   ++ +F    +     +   N   FD+   R
Sbjct: 369 REAQSAIM-----TDE------IPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILR 417

Query: 108 NIFYRNFYDSYRWSWDNGNSR 128
             + R         +++ + R
Sbjct: 418 RSYERQGIPCPWRYYNDRDVR 438


>gi|330799208|ref|XP_003287639.1| hypothetical protein DICPUDRAFT_78483 [Dictyostelium purpureum]
 gi|325082366|gb|EGC35850.1| hypothetical protein DICPUDRAFT_78483 [Dictyostelium purpureum]
          Length = 362

 Score = 39.0 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 9/68 (13%)

Query: 4   HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
           +  I D ET     +     + +   ++         E F+ K        PE+  I  +
Sbjct: 278 NIFILDSETTDL-TSNAEIIELSCACLNG--------EAFYRKSNPTIPITPESTKINNL 328

Query: 64  TPQKALRD 71
           T +     
Sbjct: 329 TSKDLAGH 336


>gi|242057047|ref|XP_002457669.1| hypothetical protein SORBIDRAFT_03g011390 [Sorghum bicolor]
 gi|241929644|gb|EES02789.1| hypothetical protein SORBIDRAFT_03g011390 [Sorghum bicolor]
          Length = 424

 Score = 39.0 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 10/129 (7%)

Query: 5   FVIYDYETFG---RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           FV+ D+E       +       +F  V V+    K+E     + +P            +T
Sbjct: 140 FVVIDFEATCDKVNNPFPQEIIEFPSVLVNSATGKLEECFQTYVRPTYHQFLTDFCKELT 199

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFY-RNFY 115
           GI   +    GV   E      ++            I+ ++N            + R   
Sbjct: 200 GIQQIQV-DRGVPLGEALLMHDKWLEDKGIKNTNFAIVTWSNWDCRTMLESECRFKRIRK 258

Query: 116 DSYRWSWDN 124
             Y   W N
Sbjct: 259 PPYFNRWIN 267


>gi|26247090|ref|NP_753130.1| hypothetical protein c1213 [Escherichia coli CFT073]
 gi|26107490|gb|AAN79673.1|AE016758_277 Hypothetical protein c1213 [Escherichia coli CFT073]
 gi|307552894|gb|ADN45669.1| putative exonuclease family protein [Escherichia coli ABU 83972]
          Length = 187

 Score = 39.0 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 16/156 (10%)

Query: 40  TEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI 99
             VF  +     +   +A  + GI+ Q          +  R++       +  +I +N  
Sbjct: 36  QVVFETRLKPTVVIGTQAAAVHGISEQALCGAP-SWTDVVRQLRHAI--GDRPVIIFNAR 92

Query: 100 RFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                  +     +        W    + + ++++    Y          S   G  S  
Sbjct: 93  FDIRILKKTAAAHSD----PADWLEELTVYCVMELAAGYYG--------ASNRYGTISLA 140

Query: 160 LQDLALANGIEHVNAHDAKADVYATLALVWLIREKK 195
                     E   AH A AD   T  +V  I    
Sbjct: 141 CAASQTGLNWE-GQAHSAIADARMTAGVVNAIAAYH 175


>gi|308500728|ref|XP_003112549.1| hypothetical protein CRE_30972 [Caenorhabditis remanei]
 gi|308267117|gb|EFP11070.1| hypothetical protein CRE_30972 [Caenorhabditis remanei]
          Length = 193

 Score = 39.0 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPA---DDYLPDPEAV 58
              +  D E  G +V      + A +  D +   I +  ++   +P    D+    P   
Sbjct: 13  QRIIWIDCEMTGLNVEKQTLCEIAVIVTDSELNTIATGPDIVIHQPKEVLDNMEDWPRKT 72

Query: 59  FI-TGITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
           F+  G+   K +       E    + +F     +P    I  N+I  D  + +    +  
Sbjct: 73  FLENGL-MDKIISSKYSMTEAENEVVEFLKLHALPGKSPIAGNSIYMDRLFIKKYMPKLD 131

Query: 115 YDSYRW 120
             ++  
Sbjct: 132 EFAHYR 137


>gi|21228069|ref|NP_633991.1| hypothetical protein MM_1967 [Methanosarcina mazei Go1]
 gi|20906505|gb|AAM31663.1| hypothetical protein MM_1967 [Methanosarcina mazei Go1]
          Length = 249

 Score = 39.0 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 4/39 (10%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST 40
           ++    +D ET G     D+              ++++ 
Sbjct: 84  SDSVAFFDIETTGLSPCRDKITVVGIY----NGNEVKTY 118


>gi|71411354|ref|XP_807930.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70872031|gb|EAN86079.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 939

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 54/171 (31%), Gaps = 12/171 (7%)

Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
           N    L           +      +   E   +L+    + +       K   ++ +   
Sbjct: 265 NTQQSLREEQERILSERQELEETKRTLEE--KILQLGEKITNEQMECEKKIQETNQRHAR 322

Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
                    +   + ++        +L        D  +  L  R R +   HTL ++  
Sbjct: 323 KMDELVAKNEELSRRLED----ESSKLQERRQELEDH-VRSLAERLRCQEETHTLEQQNL 377

Query: 418 QD-WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           ++ +     +   R  ++   N+ + L  E++ D  ++ L+    + +Q +
Sbjct: 378 KETYKREVSE--LREELQAMMNQREQLEEEHEKD--RQKLLKNEEKLIQSL 424


>gi|51245369|ref|YP_065253.1| hypothetical protein DP1517 [Desulfotalea psychrophila LSv54]
 gi|50876406|emb|CAG36246.1| unknown protein [Desulfotalea psychrophila LSv54]
          Length = 188

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 47/199 (23%), Gaps = 21/199 (10%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA----DDYLPDPE 56
           M    +I D ET           +   V +D +    +      C+          P   
Sbjct: 1   MAKEILIIDIETTNFLKEGGSIVEVGMVALDLESGVTKIIFDSLCREKILTGRHREPPFG 60

Query: 57  AVFITG-ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
            +F    +T ++              I    +        YN     D+           
Sbjct: 61  WIFKNSDLTVEEVREAP-DFDSLRAEIQSIINAYPLGATAYNRSFDFDFLESRS------ 113

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
               +            D+ +    +     +WP  ++    F            +   H
Sbjct: 114 --LSFPKKLPCPMLLCTDICKIPSPYRYKDYKWPKVEEAWDYF-------FPDHPYDEKH 164

Query: 176 DAKADVYATLALVWLIREK 194
               D      +V+ + ++
Sbjct: 165 RGADDALHEAKIVYELYKQ 183


>gi|292490446|ref|YP_003525885.1| hypothetical protein Nhal_0299 [Nitrosococcus halophilus Nc4]
 gi|291579041|gb|ADE13498.1| hypothetical protein Nhal_0299 [Nitrosococcus halophilus Nc4]
          Length = 189

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query: 409 PHTLSEKEKQDWLEHRKKM----------LTRSRIEEYKNKLQSLSGEYKG----DEGKE 454
           P  LS+ E  D L+  KK           L +    E K ++++++ + K     DE KE
Sbjct: 114 PEDLSDDEWSDILKTAKKKAEEEQQKNKILLQKMTSEEKKEIKTIAKKLKDESIPDEEKE 173

Query: 455 GLINALYEYLQWV 467
            L+ +L  + + +
Sbjct: 174 KLLESLKAFYKDI 186


>gi|227888148|ref|ZP_04005953.1| exonuclease [Escherichia coli 83972]
 gi|300977502|ref|ZP_07173939.1| exonuclease [Escherichia coli MS 45-1]
 gi|227834889|gb|EEJ45355.1| exonuclease [Escherichia coli 83972]
 gi|300409829|gb|EFJ93367.1| exonuclease [Escherichia coli MS 45-1]
          Length = 151

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 43/154 (27%), Gaps = 16/154 (10%)

Query: 42  VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
           VF  +     +   +A  + GI+ Q          +  R++       +  +I +N    
Sbjct: 2   VFETRLKPTVVIGTQAAAVHGISEQALCGAP-SWTDVVRQLRHAI--GDRPVIIFNARFD 58

Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
                +     +        W    + + ++++    Y          S   G  S    
Sbjct: 59  IRILKKTAAAHSD----PADWLEELTVYCVMELAAGYYG--------ASNRYGTISLACA 106

Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKK 195
                   E   AH A AD   T  +V  I    
Sbjct: 107 ASQTGLNWE-GQAHSAIADARMTAGVVNAIAAYH 139


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 18/82 (21%)

Query: 2   TNHFVIYDYETFGRDVALDRP--AQFAG-----VRVDRQWEKIESTEVFFCKPADDYLPD 54
           T+  V  D ET G D         Q A      + +  ++  I + E          +P 
Sbjct: 65  THTVVGLDIETTGLDPHTSEISLIQIAAPNRPVILI--EFRGITNKETLRRFIEHPKIPK 122

Query: 55  P------EAVFIT---GITPQK 67
                  E  F+T   GI P K
Sbjct: 123 VGHNLAFEIQFLTKHLGINPAK 144


>gi|56758854|gb|AAW27567.1| SJCHGC03520 protein [Schistosoma japonicum]
          Length = 201

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 46/196 (23%), Gaps = 21/196 (10%)

Query: 5   FVIYDYETFGRDVALD------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
           F++ D+E        D         +F  + V+      ES    + +P  + +      
Sbjct: 10  FMVLDFEAT---CEKDIKIPDPEIIEFPVLMVNAYTLHTESIFHHYVRPTINPVLSDFCT 66

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI       +        +    F    N  I       +   +     +       
Sbjct: 67  ELTGIIQSMIEDEPE-LPSILKMFDLFLDKNNLKI-----CPYKFAFVTCGDWDLKIMLP 120

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
           +     G    D       +     D +             +  LA  N       H   
Sbjct: 121 QQCKLLGIDVPDCFKQWINLKQVYCDVM------GQFPFSMMSMLAGLNIKHTGRHHSGI 174

Query: 179 ADVYATLALVWLIREK 194
            D      ++  +   
Sbjct: 175 DDCRNIANILCELIRC 190


>gi|328773388|gb|EGF83425.1| hypothetical protein BATDEDRAFT_34181 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1854

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 63/201 (31%), Gaps = 7/201 (3%)

Query: 263  RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHK 322
            +    L   +    +     E +       K+  LN+  +L+P+ + + ++ ER  I   
Sbjct: 1537 KENDSLIKKEKIVGIGLKSAEAEIQDFQTQKQRKLNELDVLVPLRFHQIQYLERDMIPSD 1596

Query: 323  RCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPE 382
                 + +      L++R   +  +      Q  + +     F    R    ++   +  
Sbjct: 1597 LSPALVFVNDGLLKLQNRIYELQQEKADIKKQHKELRKQHVSFIKSKRDKQQKLHELSDR 1656

Query: 383  QLSTLNLPF----SDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKN 438
                  L F       +L +L     A      L  ++ +   E  K+    ++IE+ K 
Sbjct: 1657 AKDVQMLKFGQIVDLEKLEKLGVNKTADELREKLQREDNRRLKE-IKE--YDNKIEQLKE 1713

Query: 439  KLQSLSGEYKGDEGKEGLINA 459
            +L     E          +  
Sbjct: 1714 RLTEAIKENTDKVESLVQLKE 1734


>gi|309361815|emb|CAP29074.2| hypothetical protein CBG_09528 [Caenorhabditis briggsae AF16]
          Length = 191

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 11/127 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPAD-----DYLPDPE 56
              +  D E  G +V      + A +  D +   I +  ++   +P +     +  P   
Sbjct: 13  QRIIWIDCEMTGLNVEKQTLCEIAVIVTDSELNTIATGPDIVIHQPKEVLDNMEEWPRKT 72

Query: 57  AVFITGITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRN 113
            +   G+  +K +       +    + +F     +P    I  N+I  D  + +    + 
Sbjct: 73  FLE-NGL-MEKIIDSKYSMNKAEDEVIEFLKLHALPGKSPIAGNSIYMDRLFIKKYMPKL 130

Query: 114 FYDSYRW 120
              ++  
Sbjct: 131 DEFAHYR 137


>gi|229594299|ref|XP_001024423.3| zinc finger protein, putative [Tetrahymena thermophila]
 gi|225566950|gb|EAS04178.3| zinc finger protein, putative [Tetrahymena thermophila SB210]
          Length = 257

 Score = 39.0 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 79/228 (34%), Gaps = 10/228 (4%)

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP-IKEVHLNKCPI 302
             +P+YK ++    L+              ++ L    +       V      +L+K P 
Sbjct: 36  IPNPKYKTALCRNYLNSQCNRNSGCHFAHGSEELRAVSENSNFFAEVEKSNTDYLSKWPS 95

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
            +P +Y          +   +  +N          R+  + I ++   + +         
Sbjct: 96  NIPTNYKTTLCKFYEQVGTCKYDQNCNFAHGDHEKRNIPETIQSQLKNARNSHKHINNSA 155

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRR--LPELFFRYRARNFPHTLSEKEK-QD 419
           G        +   +L T   Q   L    S ++  + E+  +  A       S+ E  Q 
Sbjct: 156 GHRNQQQLAMQQYMLGTQYFQQYFLQYVLSQQQNTILEMCNKILAD------SKDEYTQK 209

Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
            ++   +++ + +I++  ++L+ L         K+ ++  + +YLQ +
Sbjct: 210 IIDDIHQLVEQQKIKQALSQLKVLCSRKDASNKKKEILKDVEKYLQSL 257


>gi|160873900|ref|YP_001553216.1| oligoribonuclease [Shewanella baltica OS195]
 gi|160859422|gb|ABX47956.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS195]
          Length = 204

 Score = 39.0 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 38/143 (26%), Gaps = 23/143 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           M   F+  D ET G +  LD            + A +  D +  ++           D++
Sbjct: 1   MEQFFLFGDLETGGLNGRLDNGMLGMEYYPIFELAFIVTDSELNQVGEALHIVVHQDDEH 60

Query: 52  LP--DPEAVFITGITP--QKALRDGVVEAEFSRRIHQFFSVPN----------TCIIGYN 97
           +      A+ +   +          V  A+  + + +                  +   N
Sbjct: 61  IARSHEWAIDVHTKSGLLAAVRASSVSLAQAEQMVIEHLKALGIPKHDRKAKTGVVFAGN 120

Query: 98  NIRFDDYYSRNIFYRNFYDSYRW 120
           +I  D  +            +  
Sbjct: 121 SIMLDRSFIMCQMPELHEYMHYR 143


>gi|308452779|ref|XP_003089176.1| hypothetical protein CRE_04435 [Caenorhabditis remanei]
 gi|308242525|gb|EFO86477.1| hypothetical protein CRE_04435 [Caenorhabditis remanei]
          Length = 435

 Score = 39.0 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/278 (8%), Positives = 57/278 (20%), Gaps = 8/278 (2%)

Query: 133 DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIR 192
             +           ++         F  Q   +    + +  H   + V    +L   I+
Sbjct: 86  HSVCYFCKEDLKNKRFYVHLFDHHGFTKQQCEVMKQHKRLENHKGNSGVCELHSLHKKIK 145

Query: 193 EKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDS 252
                +     ++  K  L   +   N TP   +            ++ PV        +
Sbjct: 146 SLHSCV-NCGMEFITKTGLNNHLKKDN-TPCGRILANEENGPGANNIVCPVYGCTSRWTT 203

Query: 253 VIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKE 312
            +   +  D      +   ++      +  +    +    +          +        
Sbjct: 204 YLELAVHVDCAHRDLVCPSEIFMIRRKTFPDKATFLKWKKEMEKETTSEFFLRTSQKVNF 263

Query: 313 HFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQI 372
                              R         K                 L        +   
Sbjct: 264 AVRTLLYKCLCSNSRGQTKRACEQCPAFIKCCQRNHGQFEVVACFGHLGHEHPT--ETPK 321

Query: 373 MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
                  A ++ S + + F D R            +P+
Sbjct: 322 AIEFRHLANQERSNVRICFVDNRFKV----IIFFQYPN 355


>gi|220915352|ref|YP_002490656.1| hypothetical protein A2cp1_0231 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953206|gb|ACL63590.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 172

 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 11/161 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + +V+ D E  G          F  VRV+    +    E    +P  D    PEA+ I+
Sbjct: 1   MSAYVV-DVEADGPIPGKYSMVSFGAVRVEPGLSRTFRGE---VRPISDLWL-PEALAIS 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            +T ++ LR G    E      ++         ++  +N+ FD  +    F+     +  
Sbjct: 56  AVTREQHLRFGEP-GEVMAAFERWIQETTKGKPVLFSDNLSFDWQWMNWYFHTYLGRNPF 114

Query: 120 WSWDNGNSRWDLLD-VMRAIYAFSPDGIQWPSRDDGATSFK 159
               +G    DL   +++  +A            D     K
Sbjct: 115 GW--SGRRIGDLYCGMVKDGHAQWKHLRPTAHDHDPVNDAK 153


>gi|197120640|ref|YP_002132591.1| hypothetical protein AnaeK_0220 [Anaeromyxobacter sp. K]
 gi|196170489|gb|ACG71462.1| conserved hypothetical protein [Anaeromyxobacter sp. K]
          Length = 172

 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 11/161 (6%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
            + +V+ D E  G          F  VRV+    +    E    +P  D    PEA+ I+
Sbjct: 1   MSAYVV-DVEADGPIPGKYSMVSFGAVRVEPGLSRTFRGE---VRPISDLWL-PEALAIS 55

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
            +T ++ LR G    E      ++         ++  +N+ FD  +    F+     +  
Sbjct: 56  AVTREQHLRFGEP-GEVMAAFERWIQETTKGKPVLFSDNLSFDWQWMNWYFHTYLGRNPF 114

Query: 120 WSWDNGNSRWDLLD-VMRAIYAFSPDGIQWPSRDDGATSFK 159
               +G    DL   +++  +A            D     K
Sbjct: 115 GW--SGRRIGDLYCGMVKDGHAQWKHLRPTAHDHDPVNDAK 153


>gi|218187984|gb|EEC70411.1| hypothetical protein OsI_01406 [Oryza sativa Indica Group]
          Length = 544

 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 5   FVIYDYETFGRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           FV+ D+E    D   +       +F  V V+    ++E++   + +PA + L       +
Sbjct: 261 FVVIDFEAT-CDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLTDFCKEL 319

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGY-NNIRFDDYYSRNIFYRNF 114
           TGI   +    GV  +E      ++            ++ + N        S     R  
Sbjct: 320 TGIQQIQV-DRGVPLSEALLMHDKWLEEKGIKHKNFAVVTWSNWDCRVMLESECRLKRIR 378

Query: 115 YDSYRWSWDN 124
              Y   W N
Sbjct: 379 KPPYFNRWIN 388


>gi|145514788|ref|XP_001443299.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410677|emb|CAK75902.1| unnamed protein product [Paramecium tetraurelia]
          Length = 439

 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 1/93 (1%)

Query: 21  RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
              + +    D    KI      + KP D+ +        TGI   +   +G+   +   
Sbjct: 265 EIIEISAKVYDIDQRKIVRNFQKYIKPVDNPIISEFCTKQTGIKQFQI-NNGISLQQAIN 323

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
           ++   F       I            +    +N
Sbjct: 324 QLTDIFKELGRFCIITKGDFDLLILKKEAQRKN 356


>gi|82000377|sp|Q5UR48|YR569_MIMIV RecName: Full=Uncharacterized exonuclease R569
 gi|55417182|gb|AAV50832.1| unknown [Acanthamoeba polyphaga mimivirus]
          Length = 321

 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 49/213 (23%), Gaps = 51/213 (23%)

Query: 6   VIYDYETFGRDVALD--------------------------RPAQFAGVRVDRQWEKIES 39
           ++YD ET G                                   + A    +     +  
Sbjct: 131 LVYDLETTGAIENQGPFEHKPVIQRSQIYFRNNKYYAIIYPEIIEIAIKDYETGLIIMNK 190

Query: 40  TEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI 99
                               ITGITP   +       +    +     +   C +  +N 
Sbjct: 191 LVKANSTL------TLGIQNITGITPNMLVGQ-STLDQIKVELEDKLKLFTACNMLAHN- 242

Query: 100 RFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                   N F       Y+          D L V+      +    +            
Sbjct: 243 -------GNSFDNKIMLFYKLLNPQQVFFIDTLSVIPVHMESNSKLDK----------KN 285

Query: 160 LQDLALANGIEHVNAHDAKADVYATLALVWLIR 192
           L  +      E   AH A  DV A + ++  ++
Sbjct: 286 LSAIYYQLFKEKFQAHRAMNDVDALIKIMKYLK 318


>gi|290462733|gb|ADD24414.1| Oligoribonuclease, mitochondrial [Lepeophtheirus salmonis]
          Length = 216

 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 17/193 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  V  D E  G D+ +D   + A +  D+  +  +          D  L   +A+  TG
Sbjct: 37  DRIVWIDCEMTGLDLEVDVLMEVAVIITDKNLKPTKEGLNIVIHQPDSVL---DAM--TG 91

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
              +   + G+  A    +I    +  + C        F        F R         +
Sbjct: 92  FPKESHEKTGLTAACRMSKIGVKQAENDIC-------NFIKMECGTTFGRPLLAGNSVGF 144

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           D    R  +  V   ++    D        +     KL+        +    H A  D+ 
Sbjct: 145 DAKFLRKYMPSVTDILHYRIIDVSTIHECYNLWDREKLK-----FCPKKRKTHRALDDIL 199

Query: 183 ATLALVWLIREKK 195
            ++  + + +   
Sbjct: 200 ESIEQMKVFKRIM 212


>gi|308233567|ref|ZP_07664304.1| hypothetical protein AvagD15_00852 [Atopobium vaginae DSM 15829]
 gi|328943346|ref|ZP_08240811.1| hypothetical protein HMPREF0091_10036 [Atopobium vaginae DSM 15829]
 gi|327491315|gb|EGF23089.1| hypothetical protein HMPREF0091_10036 [Atopobium vaginae DSM 15829]
          Length = 322

 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 42/193 (21%), Gaps = 10/193 (5%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
            D ET  R              +D     +  +    +F  P            I  IT 
Sbjct: 137 VDLETTSRFPDRGYIINLGMEFIDLREDSDPRDGHSAYFGMPDLYAQKGVPLAQIHHITW 196

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
                      + ++          T  I  +N  F+D +              ++    
Sbjct: 197 DNIAGK-TPFRQATKIQEALLHAFCTFPIMAHNAAFEDSWF-------MLHLNGYAQARK 248

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
             +  ++D         P+    P     A                   H    DV    
Sbjct: 249 EGKIVVIDSRDICRRCDPEIKSLPRESRPAALESWARRRKTLVSGEKEKHLGLEDVDLMF 308

Query: 186 ALVWLIREKKPKL 198
             V    +++   
Sbjct: 309 RTVQAEFKEREMF 321


>gi|294659775|ref|XP_462200.2| DEHA2G15158p [Debaryomyces hansenii CBS767]
 gi|199434219|emb|CAG90692.2| DEHA2G15158p [Debaryomyces hansenii]
          Length = 791

 Score = 39.0 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 23/95 (24%), Gaps = 10/95 (10%)

Query: 1  MTNHFVIY------DYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLP 53
          M++ +V+       D  T           +FA   VD    +      V           
Sbjct: 1  MSDIYVVVHIATTCDESTTYVTKDSTELIEFAWSVVDATTLKNTYQESVLVRPIN--TPI 58

Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV 88
                +  IT +     G    +   +   F   
Sbjct: 59 TQYCSQLHKITWEHVRNAG-SFKDAIGKFDNFMQE 92


>gi|290561200|gb|ADD38002.1| Oligoribonuclease, mitochondrial [Lepeophtheirus salmonis]
          Length = 188

 Score = 39.0 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 17/193 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  V  D E  G D+ +D   + A +  D+  +  +          +  L   +A+  TG
Sbjct: 9   DRIVWIDCEMTGLDLEVDVLMEVAVIITDKNLKPTKEGLNIVIHQPNSVL---DAM--TG 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
              +   + G+  A    +I    +  + C        F        F R         +
Sbjct: 64  FPKESHAKTGLTAACRMSKIDVKQAENDIC-------NFIKMECGTTFGRPLLAGNSVGF 116

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           D    R  +  V   ++    D        +     KL+        +    H A  D+ 
Sbjct: 117 DAKFLRKYMPSVTDILHYRIIDVSTIHECYNLWDREKLK-----FCPKKRKTHRALDDIL 171

Query: 183 ATLALVWLIREKK 195
            ++  + + +   
Sbjct: 172 ESIEQMKVFKRIM 184


>gi|319935781|ref|ZP_08010210.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1]
 gi|319809216|gb|EFW05665.1| hypothetical protein HMPREF9488_01041 [Coprobacillus sp. 29_1]
          Length = 301

 Score = 38.7 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 66/218 (30%), Gaps = 29/218 (13%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           M+    ++D E    +           V +    + I +      KP +    D     +
Sbjct: 1   MSERITVFDIEV--LNQDPASVCAIGIVEL-LDQQVISTYYSL-VKPRN-LSYDVYRYKV 55

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
             I  +  L++     +  + IH +F      I+  ++I+ D    R +  +N       
Sbjct: 56  HKIKTKSLLKE-RPFQDVWKDIHHYFEN---TIVVSHDIQGDMMNLRAVLKQNHI----- 106

Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
                     +       +   PD  +          + +++L+   G E   AH A  D
Sbjct: 107 ----SYPHLYMSCTNVLAHLVYPDLHK----------YNVKELSQMIGFEF-QAHHALDD 151

Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
             A   ++  + + +          R      ++ +  
Sbjct: 152 AKACAQILIEMLKYEHCETLQELHQRFHLDFGEMKENY 189


>gi|284162617|ref|YP_003401240.1| hypothetical protein Arcpr_1521 [Archaeoglobus profundus DSM
          5631]
 gi|284012614|gb|ADB58567.1| hypothetical protein Arcpr_1521 [Archaeoglobus profundus DSM
          5631]
          Length = 233

 Score = 38.7 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQ 33
          + +D ET G     DR      +RV  +
Sbjct: 9  IFFDIETTGLKSLEDRIVAIG-IRVREE 35


>gi|168186885|ref|ZP_02621520.1| putative phage tail tape measure protein, family, core region domain
            protein [Clostridium botulinum C str. Eklund]
 gi|169295235|gb|EDS77368.1| putative phage tail tape measure protein, family, core region domain
            protein [Clostridium botulinum C str. Eklund]
          Length = 1636

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 38/218 (17%)

Query: 279  TSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ----- 333
               D LK  +      +   +   +  ++  K    + +    +        L++     
Sbjct: 1244 NKIDTLKQYLKQHESTIKATQDITIKKLEVSKNALEKYYAEAKELLKNRQDDLKEFMSST 1303

Query: 334  ---QTNLRDRFKAIYNKPYTSSSQDVDSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNL 389
                +NL++  K   ++      + +   L  +  + +   +  + + +T  E L     
Sbjct: 1304 SNFASNLKEALKQNIDEIQKKEEESIKENLNLNDKWKEHTLKNYEDVHKTRLENLDNEYK 1363

Query: 390  PFS----------DRRLPEL---------------FFRYRARNFPHTLSEKEKQDWLEHR 424
             F           D +L +                  R  A N+      + +++     
Sbjct: 1364 RFEKNINAQTKLLDEKLKKFDSEKADTDDSKKEKELKRILAMNYSKKKKAEAQKELNALI 1423

Query: 425  K---KMLTRSRIEEYKNKL-QSLSGEYKGDEGKEGLIN 458
            K   +   +  IE+ K  L + L  + +  E  +  ++
Sbjct: 1424 KSREERHYKEAIEQQKEALKEQLDNKKESVEESKKALD 1461


>gi|226226100|ref|YP_002760206.1| DNA polymerase II [Gemmatimonas aurantiaca T-27]
 gi|226089291|dbj|BAH37736.1| DNA polymerase II [Gemmatimonas aurantiaca T-27]
          Length = 825

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 8   YDYETFGRDVALDRP 22
           +D ET G D A DR 
Sbjct: 168 FDLETTGLDPATDRI 182


>gi|217971965|ref|YP_002356716.1| oligoribonuclease [Shewanella baltica OS223]
 gi|217497100|gb|ACK45293.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
           OS223]
          Length = 204

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 23/143 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           M   F+  D ET G +  LD            + A +  D +  ++           D++
Sbjct: 1   MEQFFLFGDLETGGLNGRLDNGMLGMEYYPIFELAFIVTDSELNQVGEALHVVVHQDDEH 60

Query: 52  LP--DPEAVFITGITP--QKALRDGVVEAEFSRRIHQFFSVPN----------TCIIGYN 97
           +      A+ +   +          V  A+  + + +                  +   N
Sbjct: 61  IARSHEWAIDVHTKSGLLAAVRASSVSLAQAEQMVIEHLKALGIPKHDRKAKTGVVFAGN 120

Query: 98  NIRFDDYYSRNIFYRNFYDSYRW 120
           +I FD  +            +  
Sbjct: 121 SIMFDRSFIMCQMPELHEYMHYR 143


>gi|213162769|ref|ZP_03348479.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
          str. E00-7866]
          Length = 38

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 6/31 (19%)

Query: 1  MTN------HFVIYDYETFGRDVALDRPAQF 25
          M N       F+ +DYETFG   ALDRPAQF
Sbjct: 8  MMNDGKQQSTFLFHDYETFGTHPALDRPAQF 38


>gi|89093316|ref|ZP_01166265.1| hypothetical protein MED92_12726 [Oceanospirillum sp. MED92]
 gi|89082295|gb|EAR61518.1| hypothetical protein MED92_12726 [Oceanospirillum sp. MED92]
          Length = 164

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 5  FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
           +  D E  G   +   P + A +  + +  + +S  +      +    D  A  + GI 
Sbjct: 3  LICIDLEASGLG-SQSYPIEVAWI--NDETGEKDSFLINPDTAENWQYWDDHAEEMHGID 59

Query: 65 PQKALRDGVVEAEFSRRIHQFFS 87
              ++ G+   +  +R+++   
Sbjct: 60 RGDLVKKGLDIKQACKRLNEKLK 82


>gi|332810762|ref|XP_003308562.1| PREDICTED: nestin [Pan troglodytes]
          Length = 956

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 52/192 (27%), Gaps = 7/192 (3%)

Query: 273 LAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLR 332
           L      +   L+     P+K +      I+ P++    +         +  L  L    
Sbjct: 703 LEDENKEAFRSLEKENQEPLKTLEEEDQSIVRPLETENHKSLRSLEQQDQETLRTLEKET 762

Query: 333 QQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFS 392
           QQ       +                +  D   A          L++  E+         
Sbjct: 763 QQRRRSLGEEDQMTLRPPEKVDPEPLKSLDQEIARPLENENQEFLKSLKEESVEAVKSLE 822

Query: 393 DRRLPELFFRYRARNFPHTL--SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGD 450
              L  L  +   +    TL   E +   W     + + +  ++  + ++Q      + +
Sbjct: 823 TEILESL--KSAGQENLETLKSPETQAPLWT---PEEINQGTMKPLEKEIQEPLESVEVN 877

Query: 451 EGKEGLINALYE 462
           +    L+    +
Sbjct: 878 QETLRLLEEENQ 889


>gi|126175802|ref|YP_001051951.1| oligoribonuclease [Shewanella baltica OS155]
 gi|125999007|gb|ABN63082.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica
           OS155]
          Length = 204

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 23/143 (16%)

Query: 1   MTNHFVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           M   F+  D ET G +  LD            + A +  D +  ++           D++
Sbjct: 1   MEQFFLFGDLETGGLNGRLDNGMLGMEYYPIFELAFIVTDSELNQVGEALHVVVHQDDEH 60

Query: 52  LP--DPEAVFITGITP--QKALRDGVVEAEFSRRIHQFFSVPN----------TCIIGYN 97
           +      A+ +   +          V  A+  + + +                  +   N
Sbjct: 61  IARSHEWAIDVHTKSGLLAAVRASSVSLAQAEQMVIEHLKALGIPKHDRKAKTGVVFAGN 120

Query: 98  NIRFDDYYSRNIFYRNFYDSYRW 120
           +I FD  +            +  
Sbjct: 121 SIMFDRSFIMCQMPELHEYMHYR 143


>gi|262276214|ref|ZP_06054023.1| 2-oxoglutarate dehydrogenase E1 component [Grimontia hollisae CIP
           101886]
 gi|262220022|gb|EEY71338.1| 2-oxoglutarate dehydrogenase E1 component [Grimontia hollisae CIP
           101886]
          Length = 936

 Score = 38.7 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 58/212 (27%), Gaps = 28/212 (13%)

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A  P     V    +       +D+    +  R    ++  +     P+    + K P  
Sbjct: 427 ADDPEAVAFVARLAIDYRNEFKRDVVIDLVCYRRHGHNEADEPNATQPLMYQKIKKHPT- 485

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P         ++   D ++  E +   R   +  +     Y      S        +D 
Sbjct: 486 -PRKLYADVLADKGVADIEKATELVNGYRDALDHGEIVVKEYRPMALHSVDWSPYLGHD- 543

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
                                      F  +RL EL  R  A  +P   S K      + 
Sbjct: 544 -------------WTAEWPNK------FDKQRLVELGKRLCA--YPE--SHKLHSRVNKL 580

Query: 424 RKKMLTRSRIEEYKN--KLQSLSGEYKGDEGK 453
               L  +  E+  +    ++L+     DEGK
Sbjct: 581 YNDRLAMANGEKPLDWGMAETLAYATIVDEGK 612


>gi|169776033|ref|XP_001822483.1| RNA binding protein (Arp) [Aspergillus oryzae RIB40]
 gi|83771218|dbj|BAE61350.1| unnamed protein product [Aspergillus oryzae]
          Length = 613

 Score = 38.7 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 8/89 (8%)

Query: 3  NHFVIYDYETF----GRDVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
          + +++    T     G  V  D     +   + +D +  +    E    KP +     P 
Sbjct: 12 DRYIVIHVATTCDEHGVYVTKDSAEVIELGWILLDAKTCEELHRESVLVKPVN-TPITPL 70

Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQF 85
             +T +T +     G    +   R  +F
Sbjct: 71 CTSLTTLTWEHVRSAG-TFRDAIARFDEF 98


>gi|157164466|ref|YP_001467310.1| large-conductance mechanosensitive channel [Campylobacter concisus
           13826]
 gi|112802020|gb|EAT99364.1| WlaX protein [Campylobacter concisus 13826]
          Length = 336

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 52/180 (28%), Gaps = 9/180 (5%)

Query: 71  DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY-SRNIFYRNFYDSYRWSWDNGNSRW 129
           +G  E E   +  +F +  N  ++ +N   FD           N   +  +  +N     
Sbjct: 78  EGKDEREIIAKFLKFINDYNPRLVSFNGRGFDLPMLMVRAMRYNLNAAAYYESENKELNK 137

Query: 130 DLLDVMRAIY--AFSPDGIQWPSRDDGATSFKLQDLALANGIE-----HVNAHDAKADVY 182
           +  +  RA Y   F  D + + S        KL  L  +  +      H +         
Sbjct: 138 NKWENYRARYSPKFHLDLLDFISDFGSVRGLKLDTLCASLNLPGKYDVHGDQVLELYYAG 197

Query: 183 ATLALVWLIREKKPKLFEYLYDY-RNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
               +           +     +   +  + +   I +++ +        A R  T +  
Sbjct: 198 ELDKINEYCESDVLNTYWLFLKFELLQANILQDDYINHLSVMSEFLAKNCAHRGYTEVFC 257


>gi|307169180|gb|EFN61996.1| Prion protein-interacting protein [Camponotus floridanus]
          Length = 236

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 54/209 (25%), Gaps = 21/209 (10%)

Query: 5   FVIYDYETF-----GRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            ++ D+E                 +   V      W+  ++    + +P       P  +
Sbjct: 27  LLVMDFEATCDKQVTLQPQ--EIIELPCVALSTSDWKLKDTFHA-YIRPRVYPKLTPFCI 83

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI  +         A+   +  ++         GY +      +     +       
Sbjct: 84  ELTGIMQEMVDDQP-CFADVFSKFRKWLIEG-----GYFDRSDKSSFVTCGNWDLKTMLP 137

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
                +  +  D       +     D   +  R       +L              H   
Sbjct: 138 NQCNLDNITLPDEFKQWIELKHTFCDSTGYYPRSLKDMLTRLDL------SMQGRLHSGI 191

Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRN 207
            DV   ++++  ++E+    F+      N
Sbjct: 192 DDVKNMVSIIQALKERYNTQFKITSSLTN 220


>gi|299769724|ref|YP_003731750.1| DNA polymerase III, epsilon subunit [Acinetobacter sp. DR1]
 gi|298699812|gb|ADI90377.1| DNA polymerase III, epsilon subunit [Acinetobacter sp. DR1]
          Length = 226

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 18/108 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD-RQWEKI----ESTEVFFCKPADDYLPDPEAVFI 60
           +I D ET   +     P + A   +     + +    E    F+  P      D EA+ +
Sbjct: 4   IILDTET---NKLNGYPIEIAYASIGIENGQLLVQKDEVFNRFYSCPEP---IDLEAMAV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
             I           E        +F        +G+N        ++ 
Sbjct: 58  HNIIEADIEGQPSCETFRLPEGVEFI-------VGHNIDYDIKALNKC 98


>gi|242610093|ref|YP_003001975.1| NADH dehydrogenase subunit 2 [Taenia multiceps]
 gi|239997758|gb|ACS37252.1| NADH dehydrogenase subunit 2 [Taenia multiceps]
          Length = 293

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 43/152 (28%), Gaps = 8/152 (5%)

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           Y + +     ++ L   M  +Y        W      +   K   L      E  N    
Sbjct: 89  YYFVYFGFVVKFGLFPFMFWVYRVF-SIGNWMFIYLLSVIMKFPVLFFCFLYETSNLKVV 147

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI-----DIQNMTPLVHVSGMFGA 232
             D + T+ L   +       +EY++ + +   +  L+         +   ++      A
Sbjct: 148 YIDCFFTIFLCCFLMWFFSFSWEYIWCHISLTSVATLVVACFCSSIEVCFFIYFYYFIWA 207

Query: 233 --SRSNTALIAPVAWHPRYKDSVIGCNLSGDM 262
             S     +++  +    Y   V    L    
Sbjct: 208 SLSIIYFVIVSSSSDLKGYLFWVFCFLLLVTP 239


>gi|6522931|emb|CAB62118.1| hypothetical protein [Arabidopsis thaliana]
          Length = 406

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 13/137 (9%)

Query: 29  RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS 87
            VDR  + I +       KP    +       ITGIT +      +   +    +  F S
Sbjct: 162 VVDRDLKVILDEF----VKPNKPVV--DYRTDITGITAEDIENASLSVVDIQETLQPFLS 215

Query: 88  VPNTCIIGYNNIRFDDYYSR----NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143
                I+  +++  D    +     +        Y  +        + L      Y    
Sbjct: 216 T--GTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTRKLRRPSLNNLCKSILGYEVRK 273

Query: 144 DGIQWPSRDDGATSFKL 160
            G+      D + + KL
Sbjct: 274 TGVPHDCVHDASAAMKL 290


>gi|227549657|ref|ZP_03979706.1| conserved hypothetical protein [Corynebacterium lipophiloflavum
          DSM 44291]
 gi|227078234|gb|EEI16197.1| conserved hypothetical protein [Corynebacterium lipophiloflavum
          DSM 44291]
          Length = 98

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 20/80 (25%), Gaps = 15/80 (18%)

Query: 1  MTNHF------VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
          M ++F      V+    T G   +  R      V  D      E     F        P 
Sbjct: 1  MPDNFPYVAVSVV----TTGIHPSTGRLLTIDAVTFDDDGAIGEEFHSVFST---GSDPG 53

Query: 55 PEAVFITGITPQKALRDGVV 74
          P      G+ P    +    
Sbjct: 54 PR--HNHGLEPGDFAQAPRF 71


>gi|320654041|gb|EFX22115.1| putative exonuclease [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
          Length = 575

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 35/141 (24%), Gaps = 33/141 (23%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQ-----------------WEKIESTEVFFCKPADD 50
            D ET G++           +  D Q                    I+  +         
Sbjct: 397 IDLETMGKNPDAP-IISIGAIFFDPQTGDMGPEFSKTIDLDTAGGVIDR-DTIKWWLKQS 454

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY---NNIRFDDYYSR 107
                  +     T +      +   +   ++ +F    +     +   N   FD+   R
Sbjct: 455 REAQSAIM-----TDE------IPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILR 503

Query: 108 NIFYRNFYDSYRWSWDNGNSR 128
             + R         +++ + R
Sbjct: 504 RSYERQGIPCPWRYYNDRDVR 524


>gi|226287202|gb|EEH42715.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1705

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 51/422 (12%), Positives = 107/422 (25%), Gaps = 39/422 (9%)

Query: 59   FITGITPQKALRDGVVEAEFSRRIHQF-FSVPNTCIIGYNNIRFDDYYSRNI------FY 111
             +T + P +  + GV      +R  QF  + P     G+N+    +              
Sbjct: 650  LVTLLPPDQLKKAGVNVYALDQRAGQFVITFPQAYHAGFNHGFNFNEAVNFAPADWEPLG 709

Query: 112  RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
            +      +          D L +  A    +    +W        S +  +   A  + H
Sbjct: 710  QAGVQRLQEFRRQPCFSHDELLITAAARDTTIKTAKWLGPALHRMSNRELEQRAALLVRH 769

Query: 172  VNAHD-------AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
              AH           D         +     P+        +  + L +         L 
Sbjct: 770  QQAHSHNCKISGGDEDSDECTLNFLIEDTDLPEEEYQCSYCKVYSYLTQFKCHNKGKTLC 829

Query: 225  HVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL 284
             +           +       +   +  +    L   ++  +D    ++ +      D++
Sbjct: 830  LLHADTYDCCGEDSSQKLFGPNHTLRYRMSDDALRACVQKVED--RARIPEAWAEKLDKV 887

Query: 285  KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344
                P P     L     L+                          L +  N   R +  
Sbjct: 888  LADEPKP----SLKALHALLSEGEKIPYFLPGLQDLASFVQRCDKWLDEANNYITRKQQN 943

Query: 345  YNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYR 404
              K   +  +   ++       D + + +++I     E     NL F   ++  L     
Sbjct: 944  RRKNEKAWRKVNSTKAAQMEERDRELRKVEKIHALLEE---ADNLSFDCPQITLL----- 995

Query: 405  ARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINAL 460
             R         E Q +    + +L    I     +++ L              E L  AL
Sbjct: 996  -REK-----VDEIQKFQSDAQAILCNPHISST-QEVEELVDLGRNFNVDIPEVEKLEKAL 1048

Query: 461  YE 462
             +
Sbjct: 1049 KQ 1050


>gi|295698795|ref|YP_003603449.1| p12-11p [Pyrococcus sp. 12/1]
 gi|295126590|gb|ADF80218.1| p12-11p [Pyrococcus sp. 12/1]
          Length = 195

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 9/23 (39%)

Query: 7  IYDYETFGRDVALDRPAQFAGVR 29
          + D ET G +   D    F   +
Sbjct: 45 VLDLETTGLEPEWDEILSFGIAK 67


>gi|116174728|ref|NP_001070680.1| dynactin 1a [Danio rerio]
 gi|75914611|gb|ABA29740.1| dynactin 1a [Danio rerio]
          Length = 1218

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 272 QLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHF------ERWGIDHKRCL 325
           +  +   +   E +  +   +KE        L   D   +E        E   +D +   
Sbjct: 205 EQLQEWRSKMQEQQNDLQKQLKEAKKEAREALEAKDRYMEEMADTADAIEMATLDKEMAE 264

Query: 326 ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLS 385
           E    L+Q+T                   +++ +  DG  +    + ++           
Sbjct: 265 ERAESLQQETESLKEKLEELTMDMEILKHEIEEKGSDGAASSYHVKQLEE---------- 314

Query: 386 TLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
                  + RL E   R R       LS  EK    EH K    + ++E+  ++L++L  
Sbjct: 315 ------QNARLKEALVRMR------DLSSSEK---QEHVK---LQKQMEKKNSELETLRS 356

Query: 446 EYKGDEGKEGLINALYEYLQW 466
           + +  + +  L     + L+ 
Sbjct: 357 QKEKLQEEMKLAEDTIDELKE 377


>gi|291301394|ref|YP_003512672.1| hypothetical protein Snas_3924 [Stackebrandtia nassauensis DSM
           44728]
 gi|290570614|gb|ADD43579.1| hypothetical protein Snas_3924 [Stackebrandtia nassauensis DSM
           44728]
          Length = 392

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 378 RTAPEQLSTLNLPFSDRRLPELFFRYRARNFP-------HTLSEKEKQDWLEHRKKMLTR 430
             + E+L+ L+   SD  L EL  R+     P        +L    ++  L+     LT+
Sbjct: 75  ELSSEELAKLSQVLSDDLLLELAKRHLGEFSPGELQKLWDSLDSDRREQLLDELAGELTQ 134

Query: 431 SRIEEYKNKL 440
             +++Y+++L
Sbjct: 135 DDVDKYRDEL 144


>gi|295696595|ref|YP_003589833.1| Exonuclease RNase T and DNA polymerase III [Bacillus tusciae DSM
           2912]
 gi|295412197|gb|ADG06689.1| Exonuclease RNase T and DNA polymerase III [Bacillus tusciae DSM
           2912]
          Length = 212

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 55/227 (24%), Gaps = 35/227 (15%)

Query: 1   MTNHFVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
           M+   +  D+E     +  DR           +   V V    E  +    F  +P    
Sbjct: 1   MSEQLLFLDFE---FTMPEDRSTPEQFRPEIIELGLVSV-IDGEIFDRLSTF-VRPMRFP 55

Query: 52  LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
                      I  +     G+   E    +  +  +  T  + + N   D    R    
Sbjct: 56  TLTERCKNFLQIRQEDV-DAGISFRELVETLQTYVELCPTTPVTWGN--ADLQVLRENCG 112

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                                   R     S +  ++         +K  +     G+  
Sbjct: 113 HAGLPFPFD---------------RRERDLSLEYKRFFGNRQQTGLWKAIEEYGRTGV-- 155

Query: 172 VNAHDAKADVYATLALVWLIREKK-PKLFEYLYDYRNKNQLRKLIDI 217
              H A  D   T+ +  +I + K            ++  L  +   
Sbjct: 156 GRHHRALDDALTTVEIFRMIEKDKEYLNRRERMTLGDRVDLEDVWKK 202


>gi|196248455|ref|ZP_03147156.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
 gi|196212180|gb|EDY06938.1| conserved hypothetical protein [Geobacillus sp. G11MC16]
          Length = 112

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 2/43 (4%)

Query: 5   FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCK 46
           FVI D ET G      D     A  +         +      +
Sbjct: 62  FVIIDMETTGFSPQQGDEILAMAAAKT-VNGLVTGTYMTLVKR 103


>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
 gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
          Length = 926

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFA-GVRVDRQW 34
           +   V  D+ET G DV  D     +  +R +  +
Sbjct: 354 SKKLVCVDFETTGLDVFKDTIIGISFAIRSNEAF 387


>gi|330916231|ref|XP_003297343.1| hypothetical protein PTT_07707 [Pyrenophora teres f. teres 0-1]
 gi|311330037|gb|EFQ94561.1| hypothetical protein PTT_07707 [Pyrenophora teres f. teres 0-1]
          Length = 1665

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 56/427 (13%), Positives = 114/427 (26%), Gaps = 37/427 (8%)

Query: 59   FITGITPQKALRDGVVEAEFSRRIHQF-FSVPNTCIIGYNNIRFDDYYSRNI------FY 111
             +T +TP++ L+ GV      +R  +F  + P     G+N+    +            F 
Sbjct: 719  LVTLLTPEQLLKAGVRVYAIDQRAGEFVITFPEAYHAGFNHGFNLNEAVNFAPSDWEPFG 778

Query: 112  RNFYDSYRWSWDNGNSRWDLLDVMRAIYA-FSPDGIQWPSRDDGATSFKLQDLALANGIE 170
             +     +          D L +  A     +    +W          +   L      +
Sbjct: 779  EHGVQRLQDYRRQPCFSHDELLLAAASRKDTTIKTAKWLGPAMERMRDRELRLRSDFLEK 838

Query: 171  HV--NAH----DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
            H    AH    D   DV AT  L +++ +      E +  +            +N     
Sbjct: 839  HKAVKAHTCKIDGSGDVDATCELEFIVDDADMHEDELMCAFCKSYGYLSRFYCRNAK--- 895

Query: 225  HVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL 284
             V  +  A         P A                            L +R+       
Sbjct: 896  KVLCLQHAGSFECCPDTPEADRYSGAKGQHMLVYRM-PEDAL----TSLVQRIVDKAGTP 950

Query: 285  KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344
            +         +     P L  +     E  ER   + K   +    + +   + +     
Sbjct: 951  EAWEAKMDALLAEGPRPQLKTLRALLNEG-ERIDWELKGLSDLKEFVDKCQEVAEEAILY 1009

Query: 345  YNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYR 404
              +   +  +           + +             E +  L     D     L F   
Sbjct: 1010 TTRKQQARRKAERPGRGRPSKSAIAEADEKEREYRNVENIQKLLNQAKD-----LGF--- 1061

Query: 405  ARNFPHTLSEKEKQDWLEHRKKM----LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
              + P   + +E+ + +   +      L    +E+   +L  L  E KG       + +L
Sbjct: 1062 --DSPEITTLRERAESIVEFQTRARIALRDRPVEQSITRLDELLEEGKGFNVDLPELESL 1119

Query: 461  YEYLQWV 467
             + +Q +
Sbjct: 1120 EKVVQQL 1126


>gi|195438505|ref|XP_002067177.1| GK24851 [Drosophila willistoni]
 gi|194163262|gb|EDW78163.1| GK24851 [Drosophila willistoni]
          Length = 367

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 25/132 (18%)

Query: 3   NHFVIYDYETFGR---DVALDRPAQFAGVRVDRQW-----------------EKIESTEV 42
           N F + D ET      +       +      D                      I    +
Sbjct: 20  NTFAVIDLETCNLPALNYNRTSITELCIYAFDSGILKDNVADGDAPQILEAPRVIHKLNL 79

Query: 43  FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIR 100
            F       +  P+A  +TG+      R+  +    ++ I  F        C++ +N   
Sbjct: 80  LF---QPTMMVHPDAERLTGLNNYILERESRLNENSAQMIINFVRHLPGRICLVAHNGWS 136

Query: 101 FDDYYSRNIFYR 112
           FD    R  F +
Sbjct: 137 FDFPIVRQAFEK 148


>gi|186510862|ref|NP_190579.2| SDN1 (SMALL RNA DEGRADING NUCLEASE 1); 3'-5' exonuclease/
           exonuclease [Arabidopsis thaliana]
 gi|215274638|sp|A3KPE8|SDN1_ARATH RecName: Full=Small RNA degrading nuclease 1
 gi|126352268|gb|ABO09879.1| At3g50100 [Arabidopsis thaliana]
 gi|195971097|gb|ACG60893.1| small RNA-degrading nuclease 1 [Arabidopsis thaliana]
 gi|332645105|gb|AEE78626.1| small RNA degrading nuclease 1 [Arabidopsis thaliana]
          Length = 409

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 13/137 (9%)

Query: 29  RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS 87
            VDR  + I +       KP    +       ITGIT +      +   +    +  F S
Sbjct: 162 VVDRDLKVILDEF----VKPNKPVV--DYRTDITGITAEDIENASLSVVDIQETLQPFLS 215

Query: 88  VPNTCIIGYNNIRFDDYYSR----NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143
                I+  +++  D    +     +        Y  +        + L      Y    
Sbjct: 216 T--GTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTRKLRRPSLNNLCKSILGYEVRK 273

Query: 144 DGIQWPSRDDGATSFKL 160
            G+      D + + KL
Sbjct: 274 TGVPHDCVHDASAAMKL 290


>gi|256848239|ref|ZP_05553682.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714837|gb|EEU29815.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 170

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 41/164 (25%), Gaps = 12/164 (7%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D  T G D   D          D       S      K  +   P  +   I    
Sbjct: 9   IYWID--TTGLDWQSDEIIHL--TITDLFGNVAFSHLFNPAKIKNWD-PTQQGFEIH--- 60

Query: 65  PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
           PQ          ++   I + F   +T I   N+   D  + +    +            
Sbjct: 61  PQDVANQP-PLNDYLSTIQKLFDQADTLIGFGNSTFDDW-FLQQAGIKLPQVMEVDVQQQ 118

Query: 125 GNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGATSFKLQDLALA 166
              ++ L D + +IY        +  P   D     K+      
Sbjct: 119 LFRKYQLFDYVSSIYKCADYFHYLLNPKTADYTDYPKVVAYCYC 162


>gi|118354790|ref|XP_001010656.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89292423|gb|EAR90411.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 190

 Score = 38.3 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 40/129 (31%), Gaps = 9/129 (6%)

Query: 1   MTNHFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEA 57
           + +  +  D E  G + +  D+  + A +  D +  ++        +   + L   D   
Sbjct: 10  LKDPLLWCDCEMTGLNFLNNDQIIEIATLLTDGELTQVIKGPELIIQAPKELLESMDEWC 69

Query: 58  VFITGITP--QKALRDGVVEAEFSRRIHQFFSVPN----TCIIGYNNIRFDDYYSRNIFY 111
                 +    K L+  V       ++ +F           ++  N+I  D  + +    
Sbjct: 70  TNTHKGSGLYDKVLKSEVTLQMAEEQVIKFLKDNGIEQKEALLAGNSIHADMKFIQKQMP 129

Query: 112 RNFYDSYRW 120
             +   +  
Sbjct: 130 NLYNFLHYR 138


>gi|184158545|ref|YP_001846884.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU]
 gi|183210139|gb|ACC57537.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
          Length = 226

 Score = 38.3 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 18/108 (16%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD-RQWEKI----ESTEVFFCKPADDYLPDPEAVFI 60
           +I D ET   +     P + A         + +    E    F+  P      D EA+ +
Sbjct: 4   IILDTET---NKLNGYPIEIAYAPFSLENGQLLVHKDEVFNRFYSCPEP---IDLEAMAV 57

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
             I           E+       +F        +G+N        ++ 
Sbjct: 58  HNIIETDIEGQPSCESFRLPEGVEFI-------VGHNIDYDIKALNKC 98


>gi|312375432|gb|EFR22808.1| hypothetical protein AND_14170 [Anopheles darlingi]
          Length = 847

 Score = 38.3 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 49/376 (13%), Positives = 98/376 (26%), Gaps = 54/376 (14%)

Query: 145 GIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYD 204
             +     D     K+QD+   N         A  D       +  + +     F+ +Y+
Sbjct: 6   TKKLDGGSDAQVLRKMQDICAENVYRMEQLWSAMFDSKICKDYMHRLPDHMMAFFDEVYE 65

Query: 205 YRNKNQLR---------------KLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRY 249
             N+ + R                 +  +   PL+H+ G          L   +      
Sbjct: 66  ESNQRKCRIEDGIIKLRKEAHDLSRLLNEQPDPLLHLEGEKEEKLPLLVLQNKL--DSSL 123

Query: 250 KDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV-------------PIKEVH 296
           +           +     L++  L + L      L+                   +K   
Sbjct: 124 EQMRSRLRERLAVIDDFALEAETLCEELGEQARFLQKDPLPTEQELVAYHNYIDGLKAEK 183

Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
           L +   +  +    K +     I  +   E   L  +     +       K +  ++   
Sbjct: 184 LGRLEEIAMLRQEIKGYMADLEIMPETDQEQHLLNARNFPPTNTNMEGLRKLHDYAASQY 243

Query: 357 DSQLYDGFFADVDRQIMDRILRTAP------EQLSTL--------------NLPFSDRRL 396
                      V    M + L   P      E+L                         L
Sbjct: 244 QELRRLIDEKHVQLARMWKYLNVDPAIMQKFEKLKNYTQSNFDKLYAEYERCETLRRENL 303

Query: 397 PELFFRYRAR---NFPHTL-SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEG 452
             +  R RA     +   L SE E+  +   R  +     +  ++ +L+ L   Y  +E 
Sbjct: 304 KTIVERTRAEITMWWDRCLKSEDERARFTTFRTHIFNEDTLTLHEMELEDLKEYYSTNEH 363

Query: 453 KEGLINALYEYLQWVI 468
              LI    E  + ++
Sbjct: 364 IFKLIAERQEMWERML 379


>gi|296083880|emb|CBI24268.3| unnamed protein product [Vitis vinifera]
          Length = 431

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 67/248 (27%), Gaps = 34/248 (13%)

Query: 5   FVIYDYETF---GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           FV+ D+E      ++       +F  V V+    ++E +   + +P  ++L       +T
Sbjct: 168 FVVIDFEATCDKEKNPHPQEIIEFPSVLVNSMTGQLEDSFQIYVRPTCNHLLSDFCKELT 227

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPN---TCIIGYNNIRFDDYYS---RNIFYRNFY 115
           GI   +   +GV+ +E      ++        T         +D          F R   
Sbjct: 228 GIQQIQV-DNGVLLSEALLMHDRWLEQKGIKHTNFAVVTWSDWDCRVMLESECRFKRIRK 286

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNA 174
             Y   W N    +                        G     L++     G +    A
Sbjct: 287 PPYFNRWINLKVPF--------------------HEVFGNIRCNLKEAVQRAGLLWEGRA 326

Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
           H    D   T     L+     + F +        Q  +   I+          +    +
Sbjct: 327 HCGLDDAKNT---ARLLAHIMHRGFRFSITNSLIWQSTERPSIRQQFHDCQYGPIQHPHK 383

Query: 235 SNTALIAP 242
               L   
Sbjct: 384 LKHPLGPF 391


>gi|17557752|ref|NP_505606.1| hypothetical protein C08B6.8 [Caenorhabditis elegans]
 gi|7227907|sp|Q17819|ORN_CAEEL RecName: Full=Probable oligoribonuclease
 gi|3874144|emb|CAA96590.1| C. elegans protein C08B6.8, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 193

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 9/126 (7%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-----A 57
              +  D E  G DV      + A +  D +   I +          + L + E      
Sbjct: 13  QRIIWIDCEMTGLDVEKQTLCEIALIVTDSELNTIATGPDIVIHQPKEVLDNMEEWPRNT 72

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
               G+  +K +      A+    +  F     +P    I  N+I  D  + +    +  
Sbjct: 73  FHENGL-MEKIIASKYSMADAENEVIDFLKLHALPGKSPIAGNSIYMDRLFIKKYMPKLD 131

Query: 115 YDSYRW 120
             ++  
Sbjct: 132 KFAHYR 137


>gi|84394531|ref|ZP_00993240.1| exodeoxyribonuclease I [Vibrio splendidus 12B01]
 gi|84374856|gb|EAP91794.1| exodeoxyribonuclease I [Vibrio splendidus 12B01]
          Length = 30

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 21/30 (70%)

Query: 440 LQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
           L++L+ E++ DE K  ++ A+Y+Y++ +  
Sbjct: 1   LENLAHEHESDEKKMAILKAVYQYVEKLAS 30


>gi|288959067|ref|YP_003449408.1| DNA polymerase III, epsilon subunit [Azospirillum sp. B510]
 gi|288911375|dbj|BAI72864.1| DNA polymerase III, epsilon subunit [Azospirillum sp. B510]
          Length = 463

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 19/84 (22%), Gaps = 3/84 (3%)

Query: 12  TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71
           T G +           +R+     +I  T              PEA    GI       +
Sbjct: 274 TAGTEPDSGPVIAVGTLRLV--GARIFRTVSLALLIDPIDPVPPEATARHGIGTAMVAGE 331

Query: 72  GVVEAEFSRRIHQFFSVPNTCIIG 95
               A     I           +G
Sbjct: 332 -RPFAAVWPAIRDALHNCIAVGVG 354


>gi|226193790|ref|ZP_03789392.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
          catalytic domain protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|225934095|gb|EEH30080.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
          catalytic domain protein [Burkholderia pseudomallei
          Pakistan 9]
          Length = 55

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 6/21 (28%), Positives = 7/21 (33%)

Query: 5  FVIYDYETFGRDVALDRPAQF 25
              D ET G   A  R  + 
Sbjct: 15 LAFVDLETTGGSAAEHRITEI 35


>gi|26554402|ref|NP_758336.1| DNA polymerase III [Mycoplasma penetrans HF-2]
 gi|26454412|dbj|BAC44740.1| probable DNA polymerase III [Mycoplasma penetrans HF-2]
          Length = 357

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 12/140 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
              V  D E    +    R  QF  +++ +  + I+    F           P    I  
Sbjct: 8   KEIVFVDIE---ANDKPKRILQFGAIKIKKNGD-IDKKNWFC---NPKCKITPHIYKIVS 60

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
              +K    G+     + +IH++ +       G     FD  +  N+  R        ++
Sbjct: 61  RNIKKI-DKGMSHIRITEKIHKYLNNSVLISYGA----FDYNFLNNMCKRIIKKKLNVTY 115

Query: 123 DNGNSRWDLLDVMRAIYAFS 142
            +    W  + + + ++A +
Sbjct: 116 IDLQEEWRKISMTKEVWALN 135


>gi|266625917|ref|ZP_06118852.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
 gi|288862187|gb|EFC94485.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
          Length = 333

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 39/312 (12%), Positives = 78/312 (25%), Gaps = 37/312 (11%)

Query: 93  IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152
           ++  +N  FD  +                     +  D + + R                
Sbjct: 1   VLVAHNASFDVSFINRNAEILGLPF-------EPTVLDTVTLARF-------------LL 40

Query: 153 DGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
                FKL  +A A  I   N H A  D   T  +     +   +         N  +  
Sbjct: 41  PNLNRFKLDTVAKALNISLANHHRAVDDAGCTAEIFVKFVQMLRERGVETLTELNSLKTM 100

Query: 213 KLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW-HPRYKDSVIGCNLSGDMRVFQDLDSV 271
               I+ + P  HV  +         L   ++W H  Y         S   +  + L   
Sbjct: 101 TPEMIKKL-PTYHVIIIATNDVGRVNLYKLISWSHIDYYARRPRIPKSLLNQNREGLIVG 159

Query: 272 QLAKRLFTSHDELKGLVPVPI----KEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLEN 327
              +        L+G     I    +     +   L    +  ++       +      N
Sbjct: 160 SACEAGELYQALLRGGSNAEIARLVRFYDYLEIQPLGNNSFMLRDEKSTVNSEQDLIDIN 219

Query: 328 LTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTL 387
             ++           A  +  +     +V  ++        D            ++ + L
Sbjct: 220 KKIVELGDQFGKPVCATCDVHFLDPEDEVYRRIIMAGQGFKDS-----------DEQAPL 268

Query: 388 NLPFSDRRLPEL 399
            L  ++  L E 
Sbjct: 269 YLRTTEEMLKEF 280


>gi|115435988|ref|NP_001042752.1| Os01g0280000 [Oryza sativa Japonica Group]
 gi|56783678|dbj|BAD81090.1| putative 3' exoribonuclease [Oryza sativa Japonica Group]
 gi|56784201|dbj|BAD81586.1| putative 3' exoribonuclease [Oryza sativa Japonica Group]
 gi|113532283|dbj|BAF04666.1| Os01g0280000 [Oryza sativa Japonica Group]
 gi|215737104|dbj|BAG96033.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618206|gb|EEE54338.1| hypothetical protein OsJ_01314 [Oryza sativa Japonica Group]
          Length = 411

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 5   FVIYDYETFGRDVALD----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           FV+ D+E    D   +       +F  V V+    ++E++   + +PA + L       +
Sbjct: 128 FVVIDFEAT-CDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLTDFCKEL 186

Query: 61  TGITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGY-NNIRFDDYYSRNIFYRNF 114
           TGI   +    GV  +E      ++            ++ + N        S     R  
Sbjct: 187 TGIQQIQV-DRGVPLSEALLMHDKWLEEKGIKHKNFAVVTWSNWDCRVMLESECRLKRIR 245

Query: 115 YDSYRWSWDN 124
              Y   W N
Sbjct: 246 KPPYFNRWIN 255


>gi|290462053|gb|ADD24074.1| Oligoribonuclease, mitochondrial [Lepeophtheirus salmonis]
          Length = 188

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 17/193 (8%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
           +  V  D E  G D+ +D   + A +  D+  +  +          D  L   +A+  TG
Sbjct: 9   DRIVWIDCEMTGLDLEVDVLMEVAVIITDKNLKPTKEGLNIVIHQPDSVL---DAM--TG 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
              +   + G+  A    +I    +  + C        F        F R         +
Sbjct: 64  FPKESHEKTGLTAACRMSKIDVKQAENDIC-------NFIKRECGTTFGRPLLAGNSVGF 116

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
           D    R  +  V   ++    D        +     KL+        +    H A  D+ 
Sbjct: 117 DAKFLRKYMPSVTDILHYRIIDVSTIHECYNLWDREKLK-----FCPKKRKTHRALDDIL 171

Query: 183 ATLALVWLIREKK 195
            ++  + + +   
Sbjct: 172 ESIEQMKVFKRIM 184


>gi|258577245|ref|XP_002542804.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237903070|gb|EEP77471.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 2951

 Score = 38.3 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 85/305 (27%), Gaps = 29/305 (9%)

Query: 63   ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN-IFYRNFYDSYRWS 121
            ITP+         +E ++ +             YN       +        N +D Y   
Sbjct: 1267 ITPEMIHESPSGASEKAKEVLHALHDAEYDRALYNYQTQKRQWETYISGNTNLFDPYGH- 1325

Query: 122  WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
              N    + L+    +I    PD       +D  +    +             H+A  + 
Sbjct: 1326 -QNIVVLYSLVCTTTSIPCSGPDLFALDFYNDHGSDRIFEADCTLGQYVEDLCHNA--NT 1382

Query: 182  YATLALVWLIREKKPKLFEY------LYDYRNKNQLRKLIDIQNM-------------TP 222
              T            + + +      ++     ++LR L D   M              P
Sbjct: 1383 VCTANGCEERMFDHHQQYVHGDAQVSIFVQSYPSKLRGLQDTILMWSCCKVCSNETPAMP 1442

Query: 223  LVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD 282
            +   +  +   +      +  A H R    V   +L  D   +     V L    +    
Sbjct: 1443 MSESTWKYSFGKYLELAFSSTALHVR--AGVCPHDLHRDHLRYFGYKDVALRIH-YDPIT 1499

Query: 283  ELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK 342
             L+ +VP P     ++K   L   +    +  +R           L  +  ++ + +  +
Sbjct: 1500 LLEIIVPRPRVTWKVDKD--LRLRNEIFTKAEKRLTKFMNSVKARLRGINVESVVPEMAQ 1557

Query: 343  AIYNK 347
            +   +
Sbjct: 1558 SCKME 1562


>gi|332010935|gb|AED98318.1| small RNA degrading nuclease 3 [Arabidopsis thaliana]
          Length = 762

 Score = 38.3 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 25  FAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83
              V  DR  + + +           D         ITG+T +   R  +  A+  +++ 
Sbjct: 165 VGAV--DRDLKVVLDKF------VKPDKPVIDYKTDITGVTAEDLERATLSVADIQKKLR 216

Query: 84  QFFSVPNTCIIGYNNIRFDDYY 105
           +F SV    I+  + +  D   
Sbjct: 217 RFLSV--GTILVGHGLHNDLQV 236


>gi|2257567|dbj|BAA21459.1| pi077 [Schizosaccharomyces pombe]
          Length = 231

 Score = 38.3 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/183 (8%), Positives = 50/183 (27%), Gaps = 12/183 (6%)

Query: 19  LDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAE 77
            +   +   +  D  +   I+     + +P+ +         +TGI      +   + ++
Sbjct: 18  ENEIIELPCLLFDLIEKSIIDEFHS-YVRPSMNPTLSDYCKSLTGIQQCTVDKAP-IFSD 75

Query: 78  FSRRIHQFFSVPNTCIIGYNNIRFDDY--------YSRNIFYRNFYDSYRWSWDNGNSRW 129
               +  F    +  ++   +                +N  +         S+     ++
Sbjct: 76  VLEELFIFLRKHSNILVPSVDEIEIIEPLKSVPRTQPKNWAWACDGPWDMASFLAKQFKY 135

Query: 130 DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVYATLALV 188
           D + +   I     D   +           +  +    G++   + H    D      +V
Sbjct: 136 DKMPIPDWIKGPFVDIRSFYKDVYRVPRTNINGMLEHWGLQFEGSEHRGIDDARNLSRIV 195

Query: 189 WLI 191
             +
Sbjct: 196 KKM 198


>gi|79547863|ref|NP_201525.2| SDN3 (SMALL RNA DEGRADING NUCLEASE 3); exonuclease/ nucleic acid
           binding [Arabidopsis thaliana]
 gi|75330762|sp|Q8RXK2|SDN3_ARATH RecName: Full=Small RNA degrading nuclease 3
 gi|19423880|gb|AAL87318.1| unknown protein [Arabidopsis thaliana]
 gi|25055029|gb|AAN71976.1| unknown protein [Arabidopsis thaliana]
 gi|332010934|gb|AED98317.1| small RNA degrading nuclease 3 [Arabidopsis thaliana]
          Length = 782

 Score = 38.3 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 25  FAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83
              V  DR  + + +           D         ITG+T +   R  +  A+  +++ 
Sbjct: 165 VGAV--DRDLKVVLDKF------VKPDKPVIDYKTDITGVTAEDLERATLSVADIQKKLR 216

Query: 84  QFFSVPNTCIIGYNNIRFDDYY 105
           +F SV    I+  + +  D   
Sbjct: 217 RFLSV--GTILVGHGLHNDLQV 236


>gi|321251519|ref|XP_003192094.1| RNA exonuclease; Rex2p [Cryptococcus gattii WM276]
 gi|317458562|gb|ADV20307.1| RNA exonuclease, putative; Rex2p [Cryptococcus gattii WM276]
          Length = 214

 Score = 38.3 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/200 (11%), Positives = 52/200 (26%), Gaps = 13/200 (6%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE--AVFITG 62
            V  D E  G D   DR  + A +  D + + ++    +  K   + L +         G
Sbjct: 13  LVWVDCEMTGLDFLNDRIIEIAIIITDGRLKPVDEGISYIIKTPKEILDNMGDWCREQHG 72

Query: 63  IT--PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
            +   Q  L           ++  +           ++  +++  D  +      +    
Sbjct: 73  KSGLTQACLDSPYSYDTVVEKVLDYIRKWIPERGAGLLAGSSVHADMRFMLMGMPQVMKH 132

Query: 117 SYRW-----SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
                    S      RW      +   + + +       D  A+  +LQ       +  
Sbjct: 133 LSYRILDVSSVKEICRRWYPTVRAQEQESRTTECSHRALDDIRASIQELQFYRDNIFLPL 192

Query: 172 VNAHDAKADVYATLALVWLI 191
                ++        +    
Sbjct: 193 EPVTLSRTSTSQQENISHKT 212


>gi|116749085|ref|YP_845772.1| signal transduction histidine kinase CheA [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698149|gb|ABK17337.1| CheA signal transduction histidine kinases [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1195

 Score = 38.3 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 50/173 (28%), Gaps = 17/173 (9%)

Query: 312 EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQ 371
             +E+           +  L +      R                              +
Sbjct: 378 MDYEKLAAALSEWENRMNRLGKAPPAYQRAPVQELFESHRRRFRDILPGLRQLSDGDSGK 437

Query: 372 IMDRILRTAPEQLSTLNLPFSD---RRLPELFFRYRARNFPH-TLSEKEKQDWLEHRKKM 427
            +      +PE+   L   FSD       EL  R      P   LSE E +      K+M
Sbjct: 438 GIPEDTGASPEEDEELFSIFSDSFREAFAELANRI--TISPESILSEDELEASRSIIKRM 495

Query: 428 LTRSRIEEYKNKLQSLSGEYK--------GDEGKEGLINALYEY---LQWVIP 469
           +  S+  +Y++   +L    +             E L+  L +Y   LQ +IP
Sbjct: 496 IMSSQYMDYQDVANALIEMDESILNTSRQSGAHGEFLLAQLNDYGARLQKMIP 548


>gi|262280995|ref|ZP_06058778.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257895|gb|EEY76630.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 272

 Score = 37.9 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 56/219 (25%), Gaps = 28/219 (12%)

Query: 6   VIYDYET-FGRDVALDRPAQFAGVRVDRQWEK--IESTEVFFCKPADD----YLPDPEAV 58
           +++D ET                        +  +E       +         LP  E V
Sbjct: 6   LVFDIETLTDLKA--------GAHLYHLDLPEADVEQALTKLRRQESGMDFQRLPLHEIV 57

Query: 59  FITGITPQKA-------LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            I+G+   ++        R+   EAE  ++    F   +  ++ +N  +FD         
Sbjct: 58  CISGLWIDESGFRLFSFSRENYSEAEILQKFLSIFDKRHPTLVSWNGSQFDLPVILFRAM 117

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP-DGIQWPSRDDGATSFKLQDLALANGIE 170
            +   +               +  +  Y     D +   +  +G    KL D+A   G+ 
Sbjct: 118 YHGLSAPGLFDQGEIDSQKRFNNYQNRYHHRHIDLMDVMAMFNGRNFQKLDDIACILGLP 177

Query: 171 HVNAHDAKA-----DVYATLALVWLIREKKPKLFEYLYD 204
                              L L           +     
Sbjct: 178 GKRGESGYHVPEYVRTQQWLKLTSYCEGDVLNTWFVYVR 216


>gi|260424457|ref|YP_003212658.1| guanine deaminase [Cronobacter turicensis z3032]
 gi|260219265|emb|CBA34619.1| Guanine deaminase [Cronobacter turicensis z3032]
          Length = 450

 Score = 37.9 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 67/225 (29%), Gaps = 46/225 (20%)

Query: 276 RLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT 335
             F   +  K  +P  ++     +  +++P       H+ +  +      + L  L + T
Sbjct: 59  EWFGEWEAGKQQIPAAVRVRDY-RGKLVVPGFVDTHIHYPQSEMVGAYGEQLLDWLNKYT 117

Query: 336 NLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRR 395
              +R           S+  +   L +G        +   +   + + L       +   
Sbjct: 118 FPAERRYEDLEYAREMSAFFIKQLLRNGTTT---ALVFGSVHPQSVDALFEAASQIN--- 171

Query: 396 LPELFFRYRA------RNFPHTLSEKEKQDWLE--------HRKKMLT--------RSRI 433
                 R  A      RN P  L +  ++ + E        H+K+ L          +  
Sbjct: 172 -----MRLIAGKVMMDRNAPEYLLDDPQRSYEESKALIARWHKKQRLLYAITPRFAPTSS 226

Query: 434 EEYKNKLQSLSGEYKG-------DEGKEGLINALYEYLQWVIPKE 471
            E     Q L  EY          E K+ +      +++ + P+ 
Sbjct: 227 PEQMAMAQRLREEYPDTWFQTHLSENKDEI-----AWVKALYPEH 266


>gi|332219981|ref|XP_003259136.1| PREDICTED: nestin [Nomascus leucogenys]
          Length = 1353

 Score = 37.9 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 54/194 (27%), Gaps = 11/194 (5%)

Query: 273 LAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLR 332
           L      +   L+     P+K +      I+ P++    +         +  L  L    
Sbjct: 655 LEDENQEAFRSLEKENQEPLKTLEKEDQSIVRPLETENHKSLRSLEEQDQETLRTLEKET 714

Query: 333 QQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFS 392
           QQ       +          +     +  D   A         +L++  E+         
Sbjct: 715 QQRRRSLGEEDQMTLRPPEKADPEPLKSLDQEIARPFENKNQEVLKSLKEESVEAIKSLE 774

Query: 393 DRRLPELFFRYR--ARNFPHTL--SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYK 448
                E+    +   +    TL   E +   W     + + +  ++  + ++Q      +
Sbjct: 775 ----AEILESLKSAGQENLETLKSPETQAPLWS---PEEINQGTMKPLEKEIQEPLESVE 827

Query: 449 GDEGKEGLINALYE 462
            ++    L+    +
Sbjct: 828 VNQETLRLLEEENQ 841


>gi|15668541|ref|NP_247339.1| hypothetical protein MJ_0365 [Methanocaldococcus jannaschii DSM
          2661]
 gi|2495934|sp|Q57811|Y365_METJA RecName: Full=Uncharacterized protein MJ0365
 gi|1499152|gb|AAB98356.1| hypothetical protein MJ_0365 [Methanocaldococcus jannaschii DSM
          2661]
          Length = 176

 Score = 37.9 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 7  IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE 41
          I D ET G +    R         DR    ++ +E
Sbjct: 5  IIDIETTGLNPMEHRIVAIGVKLGDRDIILMDESE 39


>gi|320197759|gb|EFW72367.1| exonuclease family protein [Escherichia coli EC4100B]
          Length = 823

 Score = 37.9 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 35/141 (24%), Gaps = 33/141 (23%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQ-----------------WEKIESTEVFFCKPADD 50
            D ET G++           +  D Q                    I+  +         
Sbjct: 645 IDLETMGKNPDAP-IISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDR-DTIKWWLKQS 702

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY---NNIRFDDYYSR 107
                  +     T +      +   +   ++ +F    +     +   N   FD+   R
Sbjct: 703 REAQSAIM-----TDE------IPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILR 751

Query: 108 NIFYRNFYDSYRWSWDNGNSR 128
             + R         +++ + R
Sbjct: 752 RSYERQGIPCPWRYYNDRDVR 772


>gi|330981498|gb|EGH79601.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 444

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 228 RIGRLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVDLRIIAATKPD 287

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 288 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 324


>gi|330973510|gb|EGH73576.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 444

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 228 RIGRLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVDLRIIAATKPD 287

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 288 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 324


>gi|330898455|gb|EGH29874.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 444

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 228 RIGRLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVDLRIIAATKPD 287

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 288 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 324


>gi|330888465|gb|EGH21126.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 444

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 228 RIGRLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVNLRIIAATKPD 287

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 288 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 324


>gi|330868793|gb|EGH03502.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 347

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 228 RIGRLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVNLRIIAATKPD 287

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 288 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 324


>gi|308452945|ref|XP_003089242.1| hypothetical protein CRE_11597 [Caenorhabditis remanei]
 gi|308241498|gb|EFO85450.1| hypothetical protein CRE_11597 [Caenorhabditis remanei]
          Length = 264

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 55/208 (26%), Gaps = 24/208 (11%)

Query: 1   MTNHF---VIYDYETF------GRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADD 50
           M+  F   +I D+E        G  + +    +F  V      W++I      + +P + 
Sbjct: 43  MSQQFEYLLILDFEATCQENSKGPILPVQEIIEFPVVQLSTSDWKEIRRFHQ-YVRPTES 101

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
                    +TGI  +         ++     +++    +      NN            
Sbjct: 102 SKLTSFCTSLTGIIQEMVDEKP-TLSDVLEEFNKWLKEDSRL---ENNNFAFVTCGDWDL 157

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
                +  ++        +     ++  YA   +             +KLQ         
Sbjct: 158 KVALPNEAKFKNIPIPDYFHQWINVKKAYAEHTNDFARGMMQLLKI-YKLQH-------- 208

Query: 171 HVNAHDAKADVYATLALVWLIREKKPKL 198
               H    DV     +V  + +     
Sbjct: 209 QGRHHSGIDDVANICEVVRCLGKDGHNY 236


>gi|302187767|ref|ZP_07264440.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae 642]
          Length = 444

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 228 RIGRLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVDLRIIAATKPD 287

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 288 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 324


>gi|298488634|ref|ZP_07006664.1| C4-dicarboxylate transport transcriptional regulatory protein
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156975|gb|EFH98065.1| C4-dicarboxylate transport transcriptional regulatory protein
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 444

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 228 RIGRLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVNLRIIAATKPD 287

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 288 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 324


>gi|289677870|ref|ZP_06498760.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae FF5]
          Length = 293

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 77  RIGRLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVDLRIIAATKPD 136

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 137 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 173


>gi|289648218|ref|ZP_06479561.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           syringae pv. aesculi str. 2250]
          Length = 444

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 228 RIGRLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVNLRIIAATKPD 287

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 288 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 324


>gi|289625657|ref|ZP_06458611.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
          Length = 344

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 228 RIGRLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVNLRIIAATKPD 287

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 288 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 324


>gi|197335361|ref|YP_002155585.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component
           [Vibrio fischeri MJ11]
 gi|197316851|gb|ACH66298.1| oxoglutarate dehydrogenase (succinyl-transferring), E1 component
           [Vibrio fischeri MJ11]
          Length = 938

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 28/212 (13%)

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A  P     V    L       +D+    +  R    ++  +     P+    + K P  
Sbjct: 427 ADDPEAVAFVTRIALDYRNEFKRDVVIDLVCYRRHGHNEADEPNATQPLMYQKIKKHPT- 485

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P         ER  ++ +   + +   R   +  +     +      +        +D 
Sbjct: 486 -PRKLYADTLIERQDLELETATQLINEYRDALDHGEVVVKEWRPMKLHNVDWSPFIGHD- 543

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
                             +        F+  RL EL  R     +P   S K      + 
Sbjct: 544 -------------WNMEWDN------EFNKERLVELGQRIC--QYPE--SHKLHSRVNKL 580

Query: 424 RKKMLTRSRIEEYKN--KLQSLSGEYKGDEGK 453
               ++    E+  +    ++L+     DEGK
Sbjct: 581 YNDRMSMIAGEKAIDWGMAETLAYATLVDEGK 612


>gi|118384040|ref|XP_001025173.1| exonuclease family protein [Tetrahymena thermophila]
 gi|89306940|gb|EAS04928.1| exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 639

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
               D+E    +       +F    +D   ++I  + V + KP+++         +T IT
Sbjct: 416 LFFIDFECNFFNKKF-EIIEFPLHVIDVNSKEIVDSFVSYVKPSNN--ITKFITRLTKIT 472

Query: 65  PQKALRDGVVEAEFSRRIHQFFSV 88
             +      +  +    +  F   
Sbjct: 473 DTQVKNAP-ILQQVLVNVQNFLEK 495


>gi|66047222|ref|YP_237063.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257929|gb|AAY39025.1| Helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae
           B728a]
          Length = 444

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 228 RIGRLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVDLRIIAATKPD 287

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 288 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 324


>gi|225683580|gb|EEH21864.1| histone demethylase JARID1C [Paracoccidioides brasiliensis Pb03]
          Length = 1595

 Score = 37.9 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 51/422 (12%), Positives = 107/422 (25%), Gaps = 39/422 (9%)

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQF-FSVPNTCIIGYNNIRFDDYYSRNI------FY 111
            +T + P +  + GV      +R  QF  + P     G+N+    +              
Sbjct: 542 LVTLLPPDQLKKAGVNVYALDQRAGQFVITFPQAYHAGFNHGFNFNEAVNFAPADWEPLG 601

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
           +      +          D L +  A    +    +W        S +  +   A  + H
Sbjct: 602 QAGVQRLQEFRRQPCFSHDELLITAAARDTTIKTAKWLGPALHRMSNRELEQRAALLVRH 661

Query: 172 VNAHD-------AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
             AH           D         +     P+        +  + L +         L 
Sbjct: 662 QQAHSHNCKISGGDEDSDECTLNFLIEDTDLPEEEYQCSYCKVYSYLTQFKCHNKGKTLC 721

Query: 225 HVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL 284
            +           +       +   +  +    L   ++  +D    ++ +      D++
Sbjct: 722 LLHADTYDCCGEDSSQKLFGPNHTLRYRMSDDALRACVQKVED--RARIPEAWAEKLDKV 779

Query: 285 KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI 344
               P P     L     L+                          L +  N   R +  
Sbjct: 780 LADEPKP----SLKALHALLSEGEKIPYFLPGLQDLASFVQRCDKWLDEANNYITRKQQN 835

Query: 345 YNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYR 404
             K   +  +   ++       D + + +++I     E     NL F   ++  L     
Sbjct: 836 RRKNEKAWRKVNSTKAAQMEERDRELRKVEKIHALLEE---ADNLSFDCPQITLL----- 887

Query: 405 ARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINAL 460
            R         E Q +    + +L    I     +++ L              E L  AL
Sbjct: 888 -REK-----VDEIQKFQSDAQAILCNPHISST-QEVEELVDLGRNFNVDIPEVEKLEKAL 940

Query: 461 YE 462
            +
Sbjct: 941 KQ 942


>gi|330880795|gb|EGH14944.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 356

 Score = 37.9 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 228 RIGKLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVNLRIIAATKPD 287

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 288 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 324


>gi|320325516|gb|EFW81578.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327196|gb|EFW83210.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 444

 Score = 37.9 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 228 RIGKLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVNLRIIAATKPD 287

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 288 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 324


>gi|71735369|ref|YP_276133.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71555922|gb|AAZ35133.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 443

 Score = 37.9 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF--------FRYRARNFPH 410
           ++    +AD     +D I      Q   L     D+RL  L          R  A   P 
Sbjct: 227 RIGKLEYADGGTVFLDEIESMPMAQQVKLLRVLQDKRLERLGSNQSIDVNLRIIAATKPD 286

Query: 411 TLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSLSG 445
            L E     + E     L     R+   + +L+ ++ 
Sbjct: 287 LLEEARAGRFREDLAYRLNVAELRLPPLRERLEDIAQ 323


>gi|262374292|ref|ZP_06067568.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262310850|gb|EEY91938.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 273

 Score = 37.9 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 58/238 (24%), Gaps = 29/238 (12%)

Query: 5   FVIYDYET-FGRDVALDRPAQFAGVRVDRQW--EKIESTEVFFCKPADD----YLPDPEA 57
            +++D ET                           +E       +         LP  E 
Sbjct: 7   ILVFDIETLTDLKA--------GAHLYHLDLPDTDVEQALTKIRRQESGMDFQRLPLHEI 58

Query: 58  VFITGITPQK-------ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
           V I+G+   +         ++   EAE   +    F      +I +N  +FD        
Sbjct: 59  VCISGLWIDEKGFRLFSFSQENNSEAEMLTKFLSIFDKKQPTLISWNGSQFDLPVILFRA 118

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP-DGIQWPSRDDGATSFKLQDLALANGI 169
             +   +               +  +  Y     D +   +  +G    KL D+A   G 
Sbjct: 119 MYHGLSAPSLFDQGEIDNQKRYNNYQNRYHQRHVDLMDVMAMFNGRNFQKLDDIACLLGF 178

Query: 170 EHVNAHDAKA-----DVYATLALVWLIREKKPKLFEYLYD-YRNKNQLRKLIDIQNMT 221
                               L L           +         K QL +L   Q + 
Sbjct: 179 PGKRGESGYHVPEYVRSAQWLKLTSYCEGDVLNTWLVYLRWLLLKGQLNQLDHQQLIQ 236


>gi|59711430|ref|YP_204206.1| alpha-ketoglutarate decarboxylase [Vibrio fischeri ES114]
 gi|59479531|gb|AAW85318.1| 2-oxoglutarate decarboxylase, thiamin-requiring [Vibrio fischeri
           ES114]
          Length = 938

 Score = 37.9 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 28/212 (13%)

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A  P     V    L       +D+    +  R    ++  +     P+    + K P  
Sbjct: 427 ADDPEAVAFVTRIALDYRNEFKRDVVIDLVCYRRHGHNEADEPNATQPLMYQKIKKHPT- 485

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P         ER  ++ +   + +   R   +  +     +      +        +D 
Sbjct: 486 -PRKLYADTLIERQDLELETATQLINEYRDALDHGEVVVKEWRPMKLHNVDWSPFIGHD- 543

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
                             +        F+  RL EL  R     +P   S K      + 
Sbjct: 544 -------------WNMEWDN------EFNKERLVELGQRIC--QYPE--SHKLHSRVNKL 580

Query: 424 RKKMLTRSRIEEYKN--KLQSLSGEYKGDEGK 453
               ++    E+  +    ++L+     DEGK
Sbjct: 581 YNDRMSMIAGEKAIDWGMAETLAYATLVDEGK 612


>gi|323975938|gb|EGB71032.1| glycosyl transferase 2 [Escherichia coli TW10509]
          Length = 823

 Score = 37.9 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 13/73 (17%)

Query: 396 LPELFFRYRARNFP----HTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDE 451
           LP L + YR +N+P      +   +     +H    LT    E +     ++   +  ++
Sbjct: 32  LPYLLYMYRYQNYPADRRELIILDDSPQSHQHIIDRLTNGTPEAF-----NIRYIHHPEK 86

Query: 452 ----GKEGLINAL 460
                K  ++N L
Sbjct: 87  LPLGKKRNMLNEL 99


>gi|309365465|emb|CAP23187.2| hypothetical protein CBG_02010 [Caenorhabditis briggsae AF16]
          Length = 300

 Score = 37.9 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 12/138 (8%)

Query: 3   NHFVIYDYETFGRDVALD---RPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEA 57
            + VI   +T  ++   D      Q + V VD +   I    +F  +  P  +       
Sbjct: 10  QNLVILKVKTTSQEKNYDFPSEVIQISAVVVDVKNNAIRENMMFNEYVMPVINSKLTENC 69

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNF-- 114
           V  TG+T +            + +   +        +     +       + + Y+    
Sbjct: 70  VKTTGVTQENVNNA-RSFRIVNEKFSNWLESNQLVGVKSAFVMDSRVDIWQRLQYQCALI 128

Query: 115 ---YDSYRWSWDNGNSRW 129
                +    W N  +  
Sbjct: 129 GVRMPARFRQWINLWTVC 146


>gi|295704562|ref|YP_003597637.1| exonuclease family protein [Bacillus megaterium DSM 319]
 gi|294802221|gb|ADF39287.1| exonuclease family protein [Bacillus megaterium DSM 319]
          Length = 311

 Score = 37.9 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 51/196 (26%), Gaps = 21/196 (10%)

Query: 3   NHFVIYDYE---TFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
             F+ +D+E   +       D    +   V+ + + E I      + +P           
Sbjct: 5   KQFIFFDFEMLCSNKGMPFEDMEAIRLGAVKYNIETENI-EFFDRYIQPTKSVSLSRFCT 63

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI     +      + F      F +                      F  +  D  
Sbjct: 64  ELTGIKDTDLVGA----SNFKNVFEDFLTWIGGI------------KKSRFFSWSTSDLS 107

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
           R+  D       L  + +    +      +  R           LAL N       H+  
Sbjct: 108 RFKIDAEKHEISLATIKKIEQRYVDFQAIFTKRVSKNNVSVENGLALYNLQFEGKKHNPM 167

Query: 179 ADVYATLALVWLIREK 194
            D Y TL +      +
Sbjct: 168 YDAYNTLRIYLSFLHE 183


>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae]
          Length = 920

 Score = 37.9 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFA-GVRVDRQW 34
           +   V  D+ET G D   D     +  ++ +  +
Sbjct: 348 SKKLVCIDFETTGLDTFKDTIIGISFAIKSNEAF 381


>gi|297616781|ref|YP_003701940.1| helicase c2 [Syntrophothermus lipocalidus DSM 12680]
 gi|297144618|gb|ADI01375.1| helicase c2 [Syntrophothermus lipocalidus DSM 12680]
          Length = 701

 Score = 37.9 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 409 PHTLSEKEKQDWLEHRKKMLT--RSRIEEYKNKLQSL------SGEYKGDEGKEGLINAL 460
           P  +            +  L   + R+E ++ +L SL        E   +E K  ++N L
Sbjct: 336 PGLVPSNIMNKLQARLQTFLQMVQERVEGFRQELDSLDSGQVDFEESGINEEKLKILNRL 395

Query: 461 YEYLQWV 467
               + +
Sbjct: 396 DRLAEKI 402


>gi|281205101|gb|EFA79294.1| hypothetical protein PPL_07712 [Polysphondylium pallidum PN500]
          Length = 1364

 Score = 37.9 bits (86), Expect = 4.0,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 69/253 (27%), Gaps = 45/253 (17%)

Query: 5    FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP---DPEAVFIT 61
            FV  D E  G     D   + A + +                P            +  +T
Sbjct: 1119 FVALDLEAAG-----DAICEIAAIDM-----TTSKCFTSMVNPGPGAPFTYCPVSSQEVT 1168

Query: 62   GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
             + P    R G     +   +          ++G+N   +D    +    ++        
Sbjct: 1169 QL-PHHWNRVGQAFYSWLESLRD-NESQIIYLVGHNIKGYDLNKLQKDSIKH-----AIG 1221

Query: 122  WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
                    D LD +            W  +     S KL  LA    I + + H A  DV
Sbjct: 1222 TPTNVRIIDTLDNL-----------DWAKKHYRFDSKKLLSLAAIYSISNPHPHRALFDV 1270

Query: 182  YATLALVWLIREK----------KPKLFEYLYDYRNK----NQLRKLIDIQNMTPLVHVS 227
              T+ ++  +             KP ++ YL    +      + ++L D     P     
Sbjct: 1271 ITTIKVIEKLYNDPINPISEIKPKPSMWSYLLLTHDSMKKDQRNKRLDDSDRPQPPTSSK 1330

Query: 228  GMFGASRSNTALI 240
                   S   L+
Sbjct: 1331 TTNPYHCSCGELL 1343


>gi|226954325|ref|ZP_03824789.1| 3'-5' exonuclease [Acinetobacter sp. ATCC 27244]
 gi|294649348|ref|ZP_06726780.1| 3'-5' exonuclease [Acinetobacter haemolyticus ATCC 19194]
 gi|226834903|gb|EEH67286.1| 3'-5' exonuclease [Acinetobacter sp. ATCC 27244]
 gi|292824788|gb|EFF83559.1| 3'-5' exonuclease [Acinetobacter haemolyticus ATCC 19194]
          Length = 273

 Score = 37.9 bits (86), Expect = 4.0,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 56/237 (23%), Gaps = 28/237 (11%)

Query: 5   FVIYDYET-FGRDVALDRPAQFAGVRVDRQWEK--IESTEVFFCKPADD----YLPDPEA 57
            +++D ET                        +  +E       +         LP  E 
Sbjct: 7   ILVFDIETLTDLKA--------GAHLYHLDLPESDVEQALTKIRRQESGMDFQRLPLHEI 58

Query: 58  VFITGITPQK-------ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
           V I+G+   +         ++   EAE   +    F      ++ +N  +FD        
Sbjct: 59  VCISGLWIDEKGFRLFSFSQEQNTEAEMLAKFLSIFDKKQPTLVSWNGSQFDLPVILFRA 118

Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP-DGIQWPSRDDGATSFKLQDLALANGI 169
             +   +               +  +  Y     D +   +  +G    KL D+A   G 
Sbjct: 119 MYHGLSAPSLFDQGEIDNQKRFNNYQNRYHHRHVDLMDVMAMFNGRNFQKLDDIACLLGF 178

Query: 170 EHVNAHDA-----KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
                               L L           +     +         +D Q   
Sbjct: 179 PGKRGESGYRVPEYVRNNNWLKLTSYCEGDVLNTWLVYLRWLLLKGQLNQLDHQQFI 235


>gi|224368019|ref|YP_002602182.1| hypothetical protein HRM2_09050 [Desulfobacterium autotrophicum
           HRM2]
 gi|223690735|gb|ACN14018.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 277

 Score = 37.9 bits (86), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 16/78 (20%)

Query: 6   VIYDYETFGRDVALDRPAQFAG-----VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
           V  D ET G + + +     A      +R   + E ++           + +   +A+ +
Sbjct: 87  VYLDIETTGLEPSYESITTIALYDGITIRYYVKGENLDRF--------PEEISQYKAI-V 137

Query: 61  TGITPQKALRDGVVEAEF 78
           T     K      +E EF
Sbjct: 138 T--YNGKCFDVPFIEHEF 153


>gi|221485909|gb|EEE24179.1| trichohyalin, putative [Toxoplasma gondii GT1]
          Length = 2236

 Score = 37.9 bits (86), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/196 (8%), Positives = 60/196 (30%), Gaps = 21/196 (10%)

Query: 263 RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHK 322
              +     +  +      +E KG      + V   +  +    +  +K   E      +
Sbjct: 495 EEERKKMEQEREEWQKHRAEEEKGKQEAIEQAVKEERKKMEQEREEWQKHRAEEEKGKQE 554

Query: 323 RCLENLTL-LRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAP 381
              + +    ++    R+ ++    +      + ++  + +        +   +  R   
Sbjct: 555 AIEKAVKEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKMEQEREEWQKHRAEE 614

Query: 382 EQLS--TLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK--KMLTRSRIEEYK 437
           E+     +     + R                  E+E+++W +HR   +   +  IE+ +
Sbjct: 615 EKGKQEAIEKAVEEERKKM---------------EQEREEWQKHRAEEEKGKQEAIEKAR 659

Query: 438 NKLQSLSGEYKGDEGK 453
             ++    + + +  +
Sbjct: 660 A-VEEERNKMEQEREQ 674



 Score = 37.5 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 66/216 (30%), Gaps = 28/216 (12%)

Query: 263 RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHK 322
              +     +  +      +E +G      K V   +       +  +K   E      +
Sbjct: 429 EEERKKMEQEREEWQKHRAEEERGKQEAIEKAVEEERKKTEQEREEWQKHRAEEEKGKQE 488

Query: 323 RCLENLTL-LRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAP 381
              + +    ++    R+ ++    +      + ++  + +        +   +  R   
Sbjct: 489 AIEKAVEEERKKMEQEREEWQKHRAEEEKGKQEAIEQAVKEERKKMEQEREEWQKHRAEE 548

Query: 382 EQLS--TLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK--KMLTRSRIEEYK 437
           E+     +     + R                  E+E+++W +HR   +   +  IE+  
Sbjct: 549 EKGKQEAIEKAVKEERKKM---------------EQEREEWQKHRAEEEKGKQEAIEKAV 593

Query: 438 NK----LQSLSGE---YKGDEGKEGLINALYEYLQW 466
            +    ++    E   ++ +E K     A+ + ++ 
Sbjct: 594 EEERKKMEQEREEWQKHRAEEEKGKQ-EAIEKAVEE 628



 Score = 36.3 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 70/224 (31%), Gaps = 30/224 (13%)

Query: 263 RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHK 322
              +     +  +      +E KG      K V   +  +    +  +K   E      +
Sbjct: 363 EEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVEEERKKVEQEREEWQKHRAEEEKGKQE 422

Query: 323 RCLENLTL-LRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAP 381
              + +    ++    R+ ++    +      + ++  + +        +   +  R   
Sbjct: 423 AIEKAVEEERKKMEQEREEWQKHRAEEERGKQEAIEKAVEEERKKTEQEREEWQKHRAEE 482

Query: 382 EQLS--TLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK--KMLTRSRIEEYK 437
           E+     +     + R                  E+E+++W +HR   +   +  IE+  
Sbjct: 483 EKGKQEAIEKAVEEERKKM---------------EQEREEWQKHRAEEEKGKQEAIEQAV 527

Query: 438 NK----LQSLSGE---YKGDEGK---EGLINALYEYLQWVIPKE 471
            +    ++    E   ++ +E K   E +  A+ E  + +  + 
Sbjct: 528 KEERKKMEQEREEWQKHRAEEEKGKQEAIEKAVKEERKKMEQER 571


>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
 gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
          Length = 920

 Score = 37.9 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFA-GVRVDRQW 34
           +   V  D+ET G D   D     +  ++ +  +
Sbjct: 348 SKKLVCIDFETTGLDTFKDTIIGISFAIKSNEAF 381


>gi|148223173|ref|NP_001082763.1| Rho guanine nucleotide exchange factor (GEF) 12 [Xenopus laevis]
 gi|34391897|gb|AAP43996.1| guanine nucleotide exchange factor [Xenopus laevis]
          Length = 1450

 Score = 37.5 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 324 CLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ--DVDSQLYDGFFADVDRQIMDRILRTAP 381
           C +N+ LL+        F       +  ++    + + LY    +   R++     +   
Sbjct: 359 CFQNMDLLKSHPAHLAVFIHHVVSQFDPAALLCYLHADLYQQTNSKETRRVFMEFNQFFL 418

Query: 382 EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRS---RIEEYKN 438
           E+ + L +P  D    EL  R      P  + E+  + +++  ++ L+      +E++K 
Sbjct: 419 ERAANLKVPVPDDVALELEKR-----RPELIPEELHRQYIQTVQERLSEDVKKNLEDFKQ 473

Query: 439 K 439
           K
Sbjct: 474 K 474


>gi|149442096|ref|XP_001518791.1| PREDICTED: similar to rabaptin, RAB GTPase binding effector protein
           1, partial [Ornithorhynchus anatinus]
          Length = 722

 Score = 37.5 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/205 (10%), Positives = 52/205 (25%), Gaps = 24/205 (11%)

Query: 276 RLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT 335
           R     ++         KE++L K   L       +   +  G    R  E    +    
Sbjct: 199 RTKQQLEQEFNQKRAKFKELYLAKEEDLKRQSAVLQAAQDDLGNLRTRLREAQAEMENIK 258

Query: 336 NLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVD--RQIMDRILRTAPEQLSTLNLPFSD 393
            +    +    +      +    ++        +  R    +      ++ +        
Sbjct: 259 AVATVSENTKQEAIDEVKRQWQEEVASLQAVMKETVRDYEHQFHHRLEQERAQWAQ---- 314

Query: 394 RRLPELFFRYRARNFP--------HTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
               E   R  A              L  + K+   +   + L    +   + ++ +L  
Sbjct: 315 --YRETAEREIADLRRRLSEGQEEENLENEMKKAQED--AEKLRSVVMPM-EKEIAALKE 369

Query: 446 EYKGDEGKEGLIN-----ALYEYLQ 465
           +    E K   +       L  YL+
Sbjct: 370 KLTEAEDKIKELEASKVKELNHYLE 394


>gi|297806567|ref|XP_002871167.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317004|gb|EFH47426.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 464

 Score = 37.5 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 18/157 (11%)

Query: 25  FAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83
            A V  DR  + I +       KP    +      FITG+T Q   +  +   +   ++ 
Sbjct: 162 VAAV--DRDLKVILDEF----VKPNQPVV--DYRTFITGLTAQDLEKATLSVVDIQEKLL 213

Query: 84  QFFSVPNTCIIGYNNIRFDDYYSRNI--------FYRNFYDSYRWSWDNGNSRWDLLDVM 135
            F S  +T ++G +          +          ++  YD  R          + L   
Sbjct: 214 MFLSE-DTILVGQSLNHDLKVLKMDHARVIDTSLVFKYNYDGTRRPLRLKRPSLNHLCKC 272

Query: 136 RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
              Y    +G+      D   + KL    L NG+E  
Sbjct: 273 ILGYEVQKEGVPHNCVHDAEAAMKLVLAILENGVETS 309


>gi|219121256|ref|XP_002185855.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582704|gb|ACI65325.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1327

 Score = 37.5 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/145 (8%), Positives = 36/145 (24%), Gaps = 5/145 (3%)

Query: 315 ERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMD 374
           E    + +   + L   R  T                +    +  +          +   
Sbjct: 403 EGLLEEKEALQDKLEEYRLDTETAQMEVEELKMELEDAQTATERAVQGDSIPVATAETSA 462

Query: 375 RILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIE 434
                   +     L   + RL E   R R +     +  +  +      K+ L    + 
Sbjct: 463 EADANEQAERKAHALATQNARLREALIRLREQTTMEKM--EITKTLRAAEKQALEGKSL- 519

Query: 435 EYKNKLQSLSGEYKGDEGKEGLINA 459
               ++++L      ++ +   +  
Sbjct: 520 --MEEIEALRATKSKNDEEINDLKD 542


>gi|154335920|ref|XP_001564196.1| kinesin [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061230|emb|CAM38252.1| putative kinesin [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1097

 Score = 37.5 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 25/159 (15%)

Query: 315 ERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDR--QI 372
           E+     +   E +    QQ   R R +   +      S D   QL +    +  R    
Sbjct: 831 EQLKQRMQVAQERMRHEYQQEIERLRARLDGDIGDRHKSVDALRQLQEMHEREATRLKDE 890

Query: 373 MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR 432
           MD + R+     + L     + RL                   E     + R+  L R+ 
Sbjct: 891 MDHLRRSRDSDCARLQNQLENERLRR-----------------ESDLMEKDRQARLVRNE 933

Query: 433 IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
           +++ K  +  L      ++ K  +     + ++ ++ ++
Sbjct: 934 VDDAKRAIDKL------NDEKGKMEKEYQDQIRGLMQQQ 966


>gi|330830981|ref|YP_004393933.1| Exonuclease RNase T and DNA polymerase III [Aeromonas veronii B565]
 gi|328806117|gb|AEB51316.1| Exonuclease RNase T and DNA polymerase III [Aeromonas veronii B565]
          Length = 169

 Score = 37.5 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 7/117 (5%)

Query: 11  ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFITGIT--PQ 66
           E  G D   +   + A +  D+    +    V     +D+ L   D   V     +    
Sbjct: 2   EMTGLDPEENVVLEIATIVTDKDLNVLAEGPVIAIHQSDEELAKMDEWNVNTHTKSGLVA 61

Query: 67  KALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
           +       EA+       F        T  +  N+I  D  +            +  
Sbjct: 62  RVKASQHDEAKAIAETLAFIRQWVPERTSPLCGNSIGQDRRFMVKHMAELEAFFHYR 118


>gi|125984766|ref|XP_001356147.1| GA16366 [Drosophila pseudoobscura pseudoobscura]
 gi|54644466|gb|EAL33207.1| GA16366 [Drosophila pseudoobscura pseudoobscura]
          Length = 335

 Score = 37.5 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 22/136 (16%)

Query: 4   HFVIYDYETFGRDVALDR---PAQFAGVRVDRQW-----------------EKIESTEVF 43
            F + D ET       +      +      +                             
Sbjct: 20  TFAVLDLETTNLPANNNNRVGITELCIYAFEAALLKQNGTKGSGENKVPVPPLPRVVHKL 79

Query: 44  FCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRF 101
                   +  P+A   TG+      R+  ++   ++ I  F     +  C++ +N   F
Sbjct: 80  NVLFQPSMMVHPDAERFTGLNNYILERESKLDENSAQMILYFLKHLPSPVCLVAHNGWHF 139

Query: 102 DDYYSRNIFYRNFYDS 117
           D    R +F +   + 
Sbjct: 140 DFPIVRKVFAKLNLEF 155


>gi|76879682|dbj|BAE45713.1| nestin [Homo sapiens]
          Length = 1018

 Score = 37.5 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 51/192 (26%), Gaps = 7/192 (3%)

Query: 273 LAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLR 332
           L      +   L+     P+K +      I+ P++    +         +  L  L    
Sbjct: 100 LEDENKEAFRSLEKENQEPLKTLEEEDQSIVRPLETENHKSLRSLEEQDQETLRTLEKET 159

Query: 333 QQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFS 392
           QQ       +                +  D   A          L++  E+         
Sbjct: 160 QQRRRSLGEQDQMTLRPPEKVDLEPLKSLDQEIARPLENENQEFLKSLKEESIEAVKSLE 219

Query: 393 DRRLPELFFRYRARNFPHTL--SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGD 450
              L  L  +   +    TL   E +   W     + + +  +   + ++Q      + +
Sbjct: 220 TEILESL--KSAGQENLETLKSPETQAPLWT---PEEINQGAMNPLEKEIQEPLESVEVN 274

Query: 451 EGKEGLINALYE 462
           +    L+    +
Sbjct: 275 QETFRLLEEENQ 286


>gi|255994768|ref|ZP_05427903.1| conserved hypothetical protein [Eubacterium saphenum ATCC 49989]
 gi|255993481|gb|EEU03570.1| conserved hypothetical protein [Eubacterium saphenum ATCC 49989]
          Length = 345

 Score = 37.5 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 59/212 (27%), Gaps = 41/212 (19%)

Query: 3   NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
            ++ ++D ET G   + D     +               +  CK  +  +    A     
Sbjct: 24  KNYCVFDIETTGFSRSSD-IITLSC--------------MLICKKDELNMIQYFA----- 63

Query: 63  ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
                       E+    +     +  +     YN   FD  +      R    +Y+ + 
Sbjct: 64  -------ESPEEESLIIEKTIPVLTNCDAVF-TYNGRAFDIPFFIERAKRTAM-AYKNTA 114

Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
            +     DLL + +     + +            S++ +++    GI        +    
Sbjct: 115 SHDICNIDLLRLFKNHLPLTKNL----------KSYRQRNIEDFFGI--APNRKDEISSA 162

Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
             + L       K K         N + +R+L
Sbjct: 163 DNITLYKEYLYSKDKNIADKLMLHNYDDVRQL 194


>gi|257096330|sp|B4F7A7|CEP57_RAT RecName: Full=Centrosomal protein of 57 kDa; Short=Cep57; AltName:
           Full=Translokin
 gi|149020682|gb|EDL78487.1| centrosomal protein 57, isoform CRA_a [Rattus norvegicus]
          Length = 499

 Score = 37.5 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 37/122 (30%), Gaps = 9/122 (7%)

Query: 350 TSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFP 409
               +   +               +   R     L  L       RL     R RA    
Sbjct: 39  YPPDKPFLNSDLRRSPNKPTFAYPESNSRAIFSALKNLQDKIR--RLE--LERIRAEESV 94

Query: 410 HTLSEK--EKQDWL-EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
            TLS +  E +  L E  ++       E   N  Q L+ +    E K  L+    EY++ 
Sbjct: 95  KTLSRETIEYKKVLDEQIQERENSKNEESKHN--QELASQLVAAENKCNLLEKQLEYMRN 152

Query: 467 VI 468
           +I
Sbjct: 153 MI 154


>gi|315252855|gb|EFU32823.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           85-1]
          Length = 1048

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 19/176 (10%)

Query: 280 SHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER----------WGIDHKRCLENLT 329
              E +    +  + +   K  I +     +    +                K  L+N  
Sbjct: 667 KKTEAEKTEDIYKRLIKQQKEQIALAGQNTELAKMKYQVSQGELSTLSEAQKKTLLQNAA 726

Query: 330 LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNL 389
           L+ Q+           +   +++S    +      +     ++ +R+      ++ ++  
Sbjct: 727 LIDQKKIREQLAAYESSLADSNASTRASNDAQLLGYG-EGSRMRERLQ-----EMWSIRH 780

Query: 390 PFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
            F  +   EL  +Y+A      L ++EK+   ++ ++ L+    ++Y  K  +L  
Sbjct: 781 EFEQKN-NELLRQYQAGEIEEALWKQEKELNKKYLEERLSDQ--QDYYAKADALRN 833


>gi|301306464|ref|ZP_07212530.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           124-1]
 gi|300838270|gb|EFK66030.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           124-1]
          Length = 1072

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 19/176 (10%)

Query: 280 SHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER----------WGIDHKRCLENLT 329
              E +    +  + +   K  I +     +    +                K  L+N  
Sbjct: 667 KKTEAEKTEDIYKRLIKQQKEQIALAGQNTELAKMKYQVSQGELSTLSEAQKKTLLQNAA 726

Query: 330 LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNL 389
           L+ Q+           +   +++S    +      +     ++ +R+      ++ ++  
Sbjct: 727 LIDQKKIREQLAAYESSLADSNASTRASNDAQLLGYG-EGSRMRERLQ-----EMWSIRH 780

Query: 390 PFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
            F  +   EL  +Y+A      L ++EK+   ++ ++ L+    ++Y  K  +L  
Sbjct: 781 EFEQKN-NELLRQYQAGEIEEALWKQEKELNKKYLEERLSDQ--QDYYAKADALRN 833


>gi|300937901|ref|ZP_07152692.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           21-1]
 gi|300457101|gb|EFK20594.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           21-1]
          Length = 1048

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 19/176 (10%)

Query: 280 SHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER----------WGIDHKRCLENLT 329
              E +    +  + +   K  I +     +    +                K  L+N  
Sbjct: 667 KKTEAEKTEDIYKRLIKQQKEQIALAGQNTELAKMKYQVSQGELSTLSEAQKKTLLQNAA 726

Query: 330 LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNL 389
           L+ Q+           +   +++S    +      +     ++ +R+      ++ ++  
Sbjct: 727 LIDQKKIREQLAAYESSLADSNASTRASNDAQLLGYG-EGSRMRERLQ-----EMWSIRH 780

Query: 390 PFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
            F  +   EL  +Y+A      L ++EK+   ++ ++ L+    ++Y  K  +L  
Sbjct: 781 EFEQKN-NELLRQYQAGEIEEALWKQEKELNKKYLEERLSDQ--QDYYAKADALRN 833


>gi|300948771|ref|ZP_07162845.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           116-1]
 gi|300451740|gb|EFK15360.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           116-1]
          Length = 1048

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 19/176 (10%)

Query: 280 SHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER----------WGIDHKRCLENLT 329
              E +    +  + +   K  I +     +    +                K  L+N  
Sbjct: 667 KKTEAEKTEDIYKRLIKQQKEQIALAGQNTELAKMKYQVSQGELSTLSEAQKKTLLQNAA 726

Query: 330 LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNL 389
           L+ Q+           +   +++S    +      +     ++ +R+      ++ ++  
Sbjct: 727 LIDQKKIREQLAAYESSLADSNASTRASNDAQLLGYG-EGSRMRERLQ-----EMWSIRH 780

Query: 390 PFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
            F  +   EL  +Y+A      L ++EK+   ++ ++ L+    ++Y  K  +L  
Sbjct: 781 EFEQKN-NELLRQYQAGEIEEALWKQEKELNKKYLEERLSDQ--QDYYAKADALRN 833


>gi|300905234|ref|ZP_07123016.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           84-1]
 gi|300402893|gb|EFJ86431.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           84-1]
          Length = 1048

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 19/176 (10%)

Query: 280 SHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER----------WGIDHKRCLENLT 329
              E +    +  + +   K  I +     +    +                K  L+N  
Sbjct: 667 KKTEAEKTEDIYKRLIKQQKEQIALAGQNTELAKMKYQVSQGELSTLSEAQKKTLLQNAA 726

Query: 330 LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNL 389
           L+ Q+           +   +++S    +      +     ++ +R+      ++ ++  
Sbjct: 727 LIDQKKIREQLAAYESSLADSNASTRASNDAQLLGYG-EGSRMRERLQ-----EMWSIRH 780

Query: 390 PFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
            F  +   EL  +Y+A      L ++EK+   ++ ++ L+    ++Y  K  +L  
Sbjct: 781 EFEQKN-NELLRQYQAGEIEEALWKQEKELNKKYLEERLSDQ--QDYYAKADALRN 833


>gi|300956155|ref|ZP_07168470.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           175-1]
 gi|300317000|gb|EFJ66784.1| phage tail tape measure protein, lambda family [Escherichia coli MS
           175-1]
          Length = 1055

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 19/176 (10%)

Query: 280 SHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER----------WGIDHKRCLENLT 329
              E +    +  + +   K  I +     +    +                K  L+N  
Sbjct: 667 KKTEAEKTEDIYKRLIKQQKEQIALAGQNTELAKMKYQVSQGELSTLSEAQKKTLLQNAA 726

Query: 330 LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNL 389
           L+ Q+           +   +++S    +      +     ++ +R+      ++ ++  
Sbjct: 727 LIDQKKIREQLAAYESSLADSNASTRASNDAQLLGYG-EGSRMRERLQ-----EMWSIRH 780

Query: 390 PFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
            F  +   EL  +Y+A      L ++EK+   ++ ++ L+    ++Y  K  +L  
Sbjct: 781 EFEQKN-NELLRQYQAGEIEEALWKQEKELNKKYLEERLSDQ--QDYYAKADALRN 833


>gi|294493410|gb|ADE92166.1| phage tail tape measure protein, lambda family [Escherichia coli
           IHE3034]
          Length = 1075

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 19/176 (10%)

Query: 280 SHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER----------WGIDHKRCLENLT 329
              E +    +  + +   K  I +     +    +                K  L+N  
Sbjct: 694 KKTEAEKTEDIYKRLIKQQKEQIALAGQNTELAKMKYQVSQGELSTLSEAQKKTLLQNAA 753

Query: 330 LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNL 389
           L+ Q+           +   +++S    +      +     ++ +R+      ++ ++  
Sbjct: 754 LIDQKKIREQLAAYESSLADSNASTRASNDAQLLGYG-EGSRMRERLQ-----EMWSIRH 807

Query: 390 PFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
            F  +   EL  +Y+A      L ++EK+   ++ ++ L+    ++Y  K  +L  
Sbjct: 808 EFEQKN-NELLRQYQAGEIEEALWKQEKELNKKYLEERLSDQ--QDYYAKADALRN 860


>gi|198421268|ref|XP_002122655.1| PREDICTED: similar to zonadhesin, partial [Ciona intestinalis]
          Length = 2534

 Score = 37.5 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 70/224 (31%), Gaps = 16/224 (7%)

Query: 258  LSGDMRVFQDLDSVQL-AKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFE- 315
            L+      + L++  L    L    +EL G     I+ +  N       I+      +  
Sbjct: 1863 LNRHESELEQLENEGLSPDLLEARREELFGRQKDEIRSLEQNHKKECKEIEEHATAGWNL 1922

Query: 316  -RWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVD--RQI 372
                  ++   ++     Q         A   +    S+Q ++S          +  ++ 
Sbjct: 1923 DFAKAKYELKEKHYQEYAQTVRELAPSVAQSAQQAEQSAQRLESTKQRLEQERAEAEKKF 1982

Query: 373  MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN-FPHTLSEKEKQDWLEHRKKMLTRS 431
                L    E    + +   D      F +  A       L  ++    LE RK+ + + 
Sbjct: 1983 AQERLELEEEGKRRIAMEMED------FEKQLAEETKAEKLKAEKTLQTLEKRKEKMLKD 2036

Query: 432  RIEEYKNKLQSLSGEYKGDEGKEGLIN----ALYEYLQWVIPKE 471
            + E+ K ++   +     +E +  ++      + ++   +  + 
Sbjct: 2037 KREKMKEEIDRAAAAGASEEEQRKILEQHERDVEKFTNKMDRER 2080


>gi|332023240|gb|EGI63496.1| Prion protein-interacting protein [Acromyrmex echinatior]
          Length = 218

 Score = 37.5 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 53/203 (26%), Gaps = 23/203 (11%)

Query: 5   FVIYDYETFG-----RDVALDRPAQF-AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
            ++ D+E                 +    V     W+  +     + KP       P   
Sbjct: 15  LLVMDFEATCERYTVLKPQ--EIIELPCAVVSTCDWKLKDMFHT-YVKPRVHPTLTPFCT 71

Query: 59  FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
            +TGI  +         A       ++ +       GY +      +     +       
Sbjct: 72  ELTGIMQETVDDQPY-FANVFSNFCEWLTKG-----GYFDKPEKSSFVTCGNWDLKTMLP 125

Query: 119 RWSWDNGNSRWDLLD-VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
                +G +  D     +   Y F      +P             L   N       H  
Sbjct: 126 SQCALDGITLPDQFKQWVELKYIFCESTGYYPKSLKDM-------LVRLNVPLKGRLHSG 178

Query: 178 KADVYATLALVWLIREKKPKLFE 200
             DV   ++++ +++EK    F+
Sbjct: 179 IDDVKNMVSIILVLKEKYNTQFK 201


>gi|329895611|ref|ZP_08271093.1| Oligoribonuclease [gamma proteobacterium IMCC3088]
 gi|328922237|gb|EGG29588.1| Oligoribonuclease [gamma proteobacterium IMCC3088]
          Length = 169

 Score = 37.5 bits (85), Expect = 5.0,   Method: Composition-based stats.
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 11 ETFGRDVALDRPAQFAGVRVDRQWEKIES 39
          E  G +   D   + A +  D +   +  
Sbjct: 2  EMTGLEPDQDVVIEIATIVTDSELNTLAE 30


>gi|325957458|ref|YP_004292870.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC]
 gi|325334023|gb|ADZ07931.1| DNA polymerase iii polc-type [Lactobacillus acidophilus 30SC]
          Length = 272

 Score = 37.5 bits (85), Expect = 5.0,   Method: Composition-based stats.
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ 33
          +   F +   ET   +   D+  + A  +  + 
Sbjct: 13 LPQDFSVVQIETTDLNPTRDQIIEIAANKYRKN 45


>gi|320182683|gb|EFW57570.1| Phage tail length tape-measure protein 1 [Shigella boydii ATCC
           9905]
          Length = 1070

 Score = 37.5 bits (85), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 59/176 (33%), Gaps = 19/176 (10%)

Query: 280 SHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER----------WGIDHKRCLENLT 329
              E +    +  + +   K  I +     +    +                K  L+N  
Sbjct: 685 KKTEAEKTEDIYKRLIKQQKEQIALAGQNTELAKMKYQVSQGELSTLSEAQKKTLLQNAA 744

Query: 330 LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNL 389
           L+ Q+           +   +++S           +     ++ +R+      ++ ++  
Sbjct: 745 LIDQKKIREQLAAYESSLADSNASARASDDAQLLGYG-EGSRMRERLQ-----EMWSIRQ 798

Query: 390 PFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
            F  +   EL  +Y+A      L ++EK+   ++ ++ L+    ++Y  K  +L  
Sbjct: 799 TFEQKN-NELLRQYQAGEIEEALWKQEKELNKKYLEERLSDQ--QDYYAKADALRN 851


>gi|67078289|ref|YP_245909.1| glycosyltransferase [Bacillus cereus E33L]
 gi|66970595|gb|AAY60571.1| glycosyltransferase [Bacillus cereus E33L]
          Length = 512

 Score = 37.5 bits (85), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 402 RYR-AR--NFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN 458
           RYR A+  N P TLS  EK+    H           ++   LQ     Y   E K  ++ 
Sbjct: 197 RYRPAQHLNTPTTLSVSEKRIIGNHI------EATSQWLKDLQDSRANYFDGERKLEILE 250

Query: 459 ALYEYLQWVIP 469
            L    Q  +P
Sbjct: 251 DLKSNKQQFLP 261


>gi|240146043|ref|ZP_04744644.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257201859|gb|EEV00144.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 367

 Score = 37.5 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 56/223 (25%), Gaps = 47/223 (21%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T + + +D ET G   A                  ++                       
Sbjct: 22  TENSLFFDIETTGFSAARTSLYLIGCAARKENLLIVDQFF-------------------- 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
                        E++       +    +T  I +N I FD  Y  N   +        +
Sbjct: 62  -------AETPADESDVLHAFLDYLQNFDTI-ITFNGIGFDIPYLTNKCQKYKIPEPFSA 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +       D+  ++                     + K + +    G+E  +A++     
Sbjct: 114 Y----EYVDIYKMISGFRFLF-----------ALPNLKQKTVEQFIGLEREDAYNG---- 154

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
              + +    ++   K    L    N   +  +  + ++   V
Sbjct: 155 GELIDVYKACQKNPDKKLISLLKQHNYEDVIDMPKLLSVLSYV 197


>gi|225020189|ref|ZP_03709381.1| hypothetical protein CORMATOL_00191 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946933|gb|EEG28142.1| hypothetical protein CORMATOL_00191 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 367

 Score = 37.5 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 47/176 (26%), Gaps = 13/176 (7%)

Query: 12  TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71
           T G   +  +      V +    E           P D   P P+   + G++ ++    
Sbjct: 21  TTGIHPSTAQLVVIDAVVLTASGEPDSDFHAVLSVPDD---PGPK--HMHGLSREEIAD- 74

Query: 72  GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG----NS 127
           G   +   + + +     +   +  +N+     +      R    + R +   G      
Sbjct: 75  GKSFSSILKALGKTI---DGRTMITHNVPLVWGFIHKEARRAMTAAARANRRRGSRGKPR 131

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           R   +  +               R       +++ +A   G+E   A         
Sbjct: 132 RRQRVGHVPRPVGIVDMLATARRRGVDLPDTRIRTVARMLGVECEPATATVERARQ 187


>gi|305680029|ref|ZP_07402839.1| DNA polymerase III, epsilon subunit [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660649|gb|EFM50146.1| DNA polymerase III, epsilon subunit [Corynebacterium matruchotii
           ATCC 14266]
          Length = 407

 Score = 37.5 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 47/176 (26%), Gaps = 13/176 (7%)

Query: 12  TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRD 71
           T G   +  +      V +    E           P D   P P+   + G++ ++    
Sbjct: 61  TTGIHPSTAQLVVIDAVVLTASGEPDSDFHAVLSVPDD---PGPK--HMHGLSREEIAD- 114

Query: 72  GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG----NS 127
           G   +   + + +     +   +  +N+     +      R    + R +   G      
Sbjct: 115 GKSFSSILKALGKTI---DGRTMITHNVPLVWGFIHKEARRAMTAAARANRRRGSRGKPR 171

Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
           R   +  +               R       +++ +A   G+E   A         
Sbjct: 172 RRQRVGHVPRPVGIVDMLATARRRGVDLPDTRIRTVARMLGVECEPATATVERARQ 227


>gi|324019450|gb|EGB88669.1| exonuclease [Escherichia coli MS 117-3]
          Length = 823

 Score = 37.5 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 35/141 (24%), Gaps = 33/141 (23%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQ-----------------WEKIESTEVFFCKPADD 50
            D ET G++           +  D Q                    I+  +         
Sbjct: 645 IDLETMGKNPDAP-IISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDR-DTIKWWLKQS 702

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY---NNIRFDDYYSR 107
                  +     T +      +   +   ++ +F    +     +   N   FD+   R
Sbjct: 703 REAQSAIM-----TDE------IPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILR 751

Query: 108 NIFYRNFYDSYRWSWDNGNSR 128
             + R         +++ + R
Sbjct: 752 RSYERQGIPCPWRYYNDRDVR 772


>gi|300087681|ref|YP_003758203.1| hypothetical protein Dehly_0570 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527414|gb|ADJ25882.1| conserved hypothetical protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 192

 Score = 37.5 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 38/169 (22%), Gaps = 24/169 (14%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
            D ET G                   ++  +     F +   D            ITP+ 
Sbjct: 26  LDIETTGLSPQCCDITVIGI----HLFKPPDR--EEFVQLVGDD-----------ITPKN 68

Query: 68  ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
            L       E   R+  F           +++  D        Y   Y  +R     G  
Sbjct: 69  LLAA----MEGIGRLFTFNGARFDLPWIRHHLGLDLSAGGIEHYDLMYYCHRRHLFGGLK 124

Query: 128 RWDLL---DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
           + + L                  W    +      L  L   N  +  N
Sbjct: 125 KIEPLLGIPRSLPEMNGYQAVKLWWRYINDFDHQALATLLAYNKEDTRN 173


>gi|113474548|ref|YP_720609.1| hypothetical protein Tery_0702 [Trichodesmium erythraeum IMS101]
 gi|110165596|gb|ABG50136.1| hypothetical protein Tery_0702 [Trichodesmium erythraeum IMS101]
          Length = 500

 Score = 37.5 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 72/248 (29%), Gaps = 21/248 (8%)

Query: 227 SGMFGASRSNTALIAPVAWHP--RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL 284
              +   R    L   +  H    + D+         +     L    L KRL  S +E+
Sbjct: 234 WRRWERIRPKIFLRTDLFQHDFLGFPDASKLRGHQITLEWKTPLLYQLLVKRLANSGEEM 293

Query: 285 KG----LVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR 340
                 +  +    +  +    ++P     +       I      EN         + + 
Sbjct: 294 NDYLKIVPDLIPSTLKRDNILGILPTSDESRFELLMEKIVGVFMGENPRKGYTYNWISNH 353

Query: 341 FKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
            +         S   + S   +      D + +       P  L    +  S  R+ E  
Sbjct: 354 LQDAKRSISPRSFLRLFSLAAERRLEKFDEKELPENRLLEPSDLQGALMDTSQDRIKE-- 411

Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLI-NA 459
                      L+E+E   WLE  +K L    +   + K  +L    K ++    L    
Sbjct: 412 -----------LTEEEYP-WLEALRKELKDLTLLTEEEKFLNLLENTKWNQEPPSLKPQE 459

Query: 460 LYEYLQWV 467
           + +YL+ +
Sbjct: 460 ILQYLEQL 467


>gi|292496089|gb|ADE29190.1| polynucleotidyl transferase/exonuclease [uncultured virus]
          Length = 222

 Score = 37.5 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 6/43 (13%)

Query: 1  MTNHF-VIYDYETFGRDV----ALDRPAQFAGVRVDRQWEKIE 38
          MT H  + +D ET G +        +  +FA          ++
Sbjct: 1  MTKHVPIFFDIETTGLNPMAQHFWSQ-TEFAAQVTAVGLGTVD 42


>gi|291536099|emb|CBL09211.1| DNA polymerase family B, exonuclease domain [Roseburia intestinalis
           M50/1]
          Length = 367

 Score = 37.5 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 56/223 (25%), Gaps = 47/223 (21%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
           T + + +D ET G   A                  ++                       
Sbjct: 22  TENSLFFDIETTGFSAARTSLYLIGCAARKENLLIVDQFF-------------------- 61

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
                        E++       +    +T  I +N I FD  Y  N   +        +
Sbjct: 62  -------AETPADESDVLHAFLDYLQNFDTI-ITFNGIGFDIPYLTNKCQKYKIPEPFSA 113

Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
           +       D+  ++                     + K + +    G+E  +A++     
Sbjct: 114 Y----EYVDIYKMISGFRFLF-----------ALPNLKQKTVEQFIGLEREDAYNG---- 154

Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
              + +    ++   K    L    N   +  +  + ++   V
Sbjct: 155 GELIDVYKACQKNPDKKLISLLKQHNYEDVIDMPKLLSVLSYV 197


>gi|227894104|ref|ZP_04011909.1| hypothetical protein HMPREF0548_1627 [Lactobacillus ultunensis
          DSM 16047]
 gi|227864082|gb|EEJ71503.1| hypothetical protein HMPREF0548_1627 [Lactobacillus ultunensis
          DSM 16047]
          Length = 99

 Score = 37.5 bits (85), Expect = 5.3,   Method: Composition-based stats.
 Identities = 5/32 (15%), Positives = 13/32 (40%)

Query: 2  TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ 33
           ++F   + ET   +   D+  + A  +  + 
Sbjct: 17 PHNFSAVEIETTDLNPNKDQITEIAARKYRKN 48


>gi|301303083|ref|ZP_07209209.1| exonuclease [Escherichia coli MS 124-1]
 gi|300841492|gb|EFK69252.1| exonuclease [Escherichia coli MS 124-1]
          Length = 323

 Score = 37.5 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 35/141 (24%), Gaps = 33/141 (23%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQ-----------------WEKIESTEVFFCKPADD 50
            D ET G++           +  D Q                    I+  +         
Sbjct: 145 IDLETMGKNPDAP-IISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDR-DTIKWWLKQS 202

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY---NNIRFDDYYSR 107
                  +     T +      +   +   ++ +F    +     +   N   FD+   R
Sbjct: 203 REAQSAIM-----TDE------IPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILR 251

Query: 108 NIFYRNFYDSYRWSWDNGNSR 128
             + R         +++ + R
Sbjct: 252 RSYERQGIPCPWRYYNDRDVR 272


>gi|186520362|ref|NP_001119175.1| SDN2 (SMALL RNA DEGRADING NUCLEASE 2); exonuclease/ nucleic acid
           binding [Arabidopsis thaliana]
 gi|332003503|gb|AED90886.1| small RNA degrading nuclease 2 [Arabidopsis thaliana]
          Length = 352

 Score = 37.5 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 51/160 (31%), Gaps = 18/160 (11%)

Query: 22  PAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
             + A V  DR  + I +       KP    +      FITG+T Q   +  +   +   
Sbjct: 159 VVRVAAV--DRDLKVILDEF----VKPNQPVV--DYRTFITGLTAQDLEKATISVVDIQE 210

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNI--------FYRNFYDSYRWSWDNGNSRWDLL 132
           ++  F S  +T ++G +          +          ++  YD  R          + L
Sbjct: 211 KLLMFISE-DTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLRLKRPSLNYL 269

Query: 133 DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                 Y    +G+      D   + KL    L NG E  
Sbjct: 270 CKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNGAETS 309


>gi|327408326|emb|CCA30114.1| hypothetical protein NCLIV_070050 [Neospora caninum Liverpool]
          Length = 656

 Score = 37.5 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 41/162 (25%), Gaps = 16/162 (9%)

Query: 259 SGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWG 318
           S    V + L  ++  K ++             +K   L K P  +  +   K       
Sbjct: 154 STPKEVDEYLKQLEEEKEVWPKFTNKAEARRWIVKLFELKKFPPRINWENAVKFLEADKR 213

Query: 319 IDHKRCLEN-------LTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQ 371
            +  + L            + Q+            +    +      +  +         
Sbjct: 214 WESFKILTRGERKQYFSEFMSQRQKKTADSTRKKKQEARDALSQALQKWQELAPGTTYIA 273

Query: 372 IMDRILRTAPEQLSTLNLP---FSD------RRLPELFFRYR 404
           + D++         T       F D      +R  ELF + R
Sbjct: 274 MADKMHEEDWWNFLTEQERDDFFQDYMEEFDKRYRELFKKKR 315


>gi|323947989|gb|EGB43983.1| exonuclease RNase T and DNA polymerase III [Escherichia coli H120]
          Length = 823

 Score = 37.5 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 35/141 (24%), Gaps = 33/141 (23%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQ-----------------WEKIESTEVFFCKPADD 50
            D ET G++           +  D Q                    I+  +         
Sbjct: 645 IDLETMGKNPDAP-IISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDR-DTIKWWLKQS 702

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY---NNIRFDDYYSR 107
                  +     T +      +   +   ++ +F    +     +   N   FD+   R
Sbjct: 703 REAQSAIM-----TDE------IPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILR 751

Query: 108 NIFYRNFYDSYRWSWDNGNSR 128
             + R         +++ + R
Sbjct: 752 RSYERQGIPCPWRYYNDRDVR 772


>gi|157822611|ref|NP_001101594.1| centrosomal protein of 57 kDa [Rattus norvegicus]
 gi|149020683|gb|EDL78488.1| centrosomal protein 57, isoform CRA_b [Rattus norvegicus]
 gi|195540093|gb|AAI68198.1| Centrosomal protein 57kDa [Rattus norvegicus]
          Length = 472

 Score = 37.1 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 37/122 (30%), Gaps = 9/122 (7%)

Query: 350 TSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFP 409
               +   +               +   R     L  L       RL     R RA    
Sbjct: 12  YPPDKPFLNSDLRRSPNKPTFAYPESNSRAIFSALKNLQDKIR--RLE--LERIRAEESV 67

Query: 410 HTLSEK--EKQDWL-EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
            TLS +  E +  L E  ++       E   N  Q L+ +    E K  L+    EY++ 
Sbjct: 68  KTLSRETIEYKKVLDEQIQERENSKNEESKHN--QELASQLVAAENKCNLLEKQLEYMRN 125

Query: 467 VI 468
           +I
Sbjct: 126 MI 127


>gi|32451885|gb|AAH54565.1| LOC407638 protein [Danio rerio]
          Length = 910

 Score = 37.1 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 65/201 (32%), Gaps = 34/201 (16%)

Query: 272 QLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHF------ERWGIDHKRCL 325
           +  +   +   E +  +   +KE        L   D   +E        E   +D +   
Sbjct: 205 EQLQEWRSKMQEQQNDLQKQLKEAKKEAREALEAKDRYMEEMADTADAIEMATLDKEMAE 264

Query: 326 ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLS 385
           E    L+Q+T                   +++ +  DG  +    + ++           
Sbjct: 265 ERAESLQQETESLKEKLEELTMDMEILKHEIEEKGSDGAASSYHVKQLEE---------- 314

Query: 386 TLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
                  + RL E   R R       LS  EK    EH K    + ++E+  ++L++L  
Sbjct: 315 ------QNARLKEALVRMR------DLSSSEK---QEHVK---LQKQMEKKNSELETLRS 356

Query: 446 EYKGDEGKEGLINALYEYLQW 466
           + +  + +  L     + L+ 
Sbjct: 357 QKEKLQEEMKLAEDTIDELKE 377


>gi|330792645|ref|XP_003284398.1| hypothetical protein DICPUDRAFT_96678 [Dictyostelium purpureum]
 gi|325085645|gb|EGC39048.1| hypothetical protein DICPUDRAFT_96678 [Dictyostelium purpureum]
          Length = 1167

 Score = 37.1 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 57/198 (28%), Gaps = 9/198 (4%)

Query: 259 SGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWG 318
               +V  +L + QL + +     E   L     K +  N   +          +     
Sbjct: 638 KNKPQVNVELSNHQLKQYIQGLKSENSHLR----KFIESNSSNMGTISPSQISSYIVELQ 693

Query: 319 IDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILR 378
              ++   +  LL       +       +    S ++      +      +     + ++
Sbjct: 694 NSLEQYKTHQELLDSNIRNLEDDINQLEEQKRVSEEEKTLMKQENNKKFEECNQDFKKIQ 753

Query: 379 TAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH-RKKMLTRSRIEEYK 437
              E+ +       D R  EL  R         L E  +  +     ++++    +E+  
Sbjct: 754 NLFEESNRYIKSLEDER-AELQERI---EELTELIEDLQNKYKGLQSQEVIMGEELEKSL 809

Query: 438 NKLQSLSGEYKGDEGKEG 455
           N+ + L G     + K  
Sbjct: 810 NEREDLLGHLNKIKEKNK 827


>gi|119573310|gb|EAW52925.1| nestin, isoform CRA_c [Homo sapiens]
 gi|119573311|gb|EAW52926.1| nestin, isoform CRA_c [Homo sapiens]
          Length = 1621

 Score = 37.1 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 51/192 (26%), Gaps = 7/192 (3%)

Query: 273 LAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLR 332
           L      +   L+     P+K +      I+ P++    +         +  L  L    
Sbjct: 703 LEDENKEAFRSLEKENQEPLKTLEEEDQSIVRPLETENHKSLRSLEEQDQETLRTLEKET 762

Query: 333 QQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFS 392
           QQ       +                +  D   A          L++  E+         
Sbjct: 763 QQRRRSLGEQDQMTLRPPEKVDLEPLKSLDQEIARPLENENQEFLKSLKEESVEAVKSLE 822

Query: 393 DRRLPELFFRYRARNFPHTL--SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGD 450
              L  L  +   +    TL   E +   W     + + +  +   + ++Q      + +
Sbjct: 823 TEILESL--KSAGQENLETLKSPETQAPLWT---PEEINQGAMNPLEKEIQEPLESVEVN 877

Query: 451 EGKEGLINALYE 462
           +    L+    +
Sbjct: 878 QETFRLLEEENQ 889


>gi|38176300|ref|NP_006608.1| nestin [Homo sapiens]
 gi|146345464|sp|P48681|NEST_HUMAN RecName: Full=Nestin
 gi|55960770|emb|CAI16338.1| nestin [Homo sapiens]
 gi|260158898|gb|ACX32329.1| nestin [synthetic construct]
          Length = 1621

 Score = 37.1 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 51/192 (26%), Gaps = 7/192 (3%)

Query: 273 LAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLR 332
           L      +   L+     P+K +      I+ P++    +         +  L  L    
Sbjct: 703 LEDENKEAFRSLEKENQEPLKTLEEEDQSIVRPLETENHKSLRSLEEQDQETLRTLEKET 762

Query: 333 QQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFS 392
           QQ       +                +  D   A          L++  E+         
Sbjct: 763 QQRRRSLGEQDQMTLRPPEKVDLEPLKSLDQEIARPLENENQEFLKSLKEESVEAVKSLE 822

Query: 393 DRRLPELFFRYRARNFPHTL--SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGD 450
              L  L  +   +    TL   E +   W     + + +  +   + ++Q      + +
Sbjct: 823 TEILESL--KSAGQENLETLKSPETQAPLWT---PEEINQGAMNPLEKEIQEPLESVEVN 877

Query: 451 EGKEGLINALYE 462
           +    L+    +
Sbjct: 878 QETFRLLEEENQ 889


>gi|157823015|ref|NP_001101625.1| kinesin-like protein KIF23 [Rattus norvegicus]
 gi|149041901|gb|EDL95742.1| kinesin family member 23 (predicted) [Rattus norvegicus]
          Length = 952

 Score = 37.1 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 17/76 (22%)

Query: 395 RLPEL----------FFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR--IEEYKNKLQS 442
           RL +L           F+   + F ++LS KE      + ++ L      I   K++++ 
Sbjct: 506 RLRQLMTEELNKQCVAFKALFKEFDNSLSNKE-----NYIQEKLNEKEKVISGQKSEIER 560

Query: 443 LSGEYKGDEGKEGLIN 458
           L  + K  E K  ++ 
Sbjct: 561 LEKKNKTLEYKIEILE 576


>gi|118379075|ref|XP_001022705.1| hypothetical protein TTHERM_00729200 [Tetrahymena thermophila]
 gi|89304472|gb|EAS02460.1| hypothetical protein TTHERM_00729200 [Tetrahymena thermophila
           SB210]
          Length = 526

 Score = 37.1 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/288 (9%), Positives = 93/288 (32%), Gaps = 12/288 (4%)

Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL--IAP 242
           + +V+ + +  P+ F    D+        L     +  +         +R   A      
Sbjct: 44  IGIVYHLEDSIPEFFVIFLDFARAKLTNSLQSNIIILIVCIFQNFIYINRLFDAAKDFFL 103

Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
                  +  ++   L  +  +  + +  +       + DE   +    +++  + +  +
Sbjct: 104 FTLGTLNRHIMLQIKLKWNQEINSEENLQKQLLAQIRNFDEQSLIQKATLQKNRIQQLQM 163

Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
              I+       ++   D +   E      ++ + ++      N                
Sbjct: 164 YEQINENNNNALKQLIQDKQLTQEQQLKFIKEQHAQEIAMHQKNLEENIQKNLKIINNLV 223

Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK--EKQDW 420
               ++  Q+ +   +   E+ S        +++   + +         LS++  E++ W
Sbjct: 224 QEKKEMSDQLEEVFQKLEEEKESNAQKL---KKMKIFYEQEIKNQKDSILSKEKKEREKW 280

Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
            + + + +    I+  + +LQ+L  ++  +  +  L     +Y Q ++
Sbjct: 281 QKEKAEKIRELTIKGLEPELQNLIEKHNLELKQLKL-----DYQQKLL 323


>gi|50121555|ref|YP_050722.1| hypothetical protein ECA2630 [Pectobacterium atrosepticum SCRI1043]
 gi|49612081|emb|CAG75531.1| phage-related protein [Pectobacterium atrosepticum SCRI1043]
          Length = 299

 Score = 37.1 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 30/138 (21%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD---------------- 49
           V+ D ET G++      A    V  + +  ++     F+C+                   
Sbjct: 4   VMIDIETMGKNP-RAPIASIGAVFFNPKTGELGEQ--FYCRVDFENDMLNGAVTDSGTIK 60

Query: 50  -DYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDY 104
                 PEA      + +    D         +   + +       T  +  N+  FD  
Sbjct: 61  WWLRQSPEA------SAELISDDATPIWGAISQFSDWLTDNAESLKTLKVWANSPSFDCT 114

Query: 105 YSRNIFYRNFYDSYRWSW 122
             ++ F R   D     W
Sbjct: 115 ILKSAFERTEIDIPWNYW 132


>gi|157156186|ref|YP_001462864.1| exonuclease family protein [Escherichia coli E24377A]
 gi|157078216|gb|ABV17924.1| exonuclease family protein [Escherichia coli E24377A]
          Length = 825

 Score = 37.1 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 35/141 (24%), Gaps = 33/141 (23%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQ-----------------WEKIESTEVFFCKPADD 50
            D ET G++           +  D Q                    I+  +         
Sbjct: 647 IDLETMGKNPDAP-IISIGAIFFDPQTGDMGPEFSKTIDLETAGGVIDR-DTIKWWLKQS 704

Query: 51  YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY---NNIRFDDYYSR 107
                  +     T +      +   +   ++ +F    +     +   N   FD+   R
Sbjct: 705 REAQSAIM-----TDE------IPLDDALLQLREFIDENSGEFFVHVWGNGANFDNTILR 753

Query: 108 NIFYRNFYDSYRWSWDNGNSR 128
             + R         +++ + R
Sbjct: 754 RSYERQGIPCPWRYYNDRDVR 774


>gi|217574694|gb|ACK55900.1| NADH dehydrogenase subunit 2 [Taenia multiceps]
          Length = 293

 Score = 37.1 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 43/152 (28%), Gaps = 8/152 (5%)

Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
           Y + +     ++ L   +  +Y        W      +   K   L      E  N    
Sbjct: 89  YYFVYFGFVVKFGLFPFVFWVYRVF-SIGNWMFIYLLSVIMKFPVLFFCFLYEISNLKVV 147

Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI-----DIQNMTPLVHVSGMFGA 232
             D + T+ L   +       +EY++ + +   +  L+         +   ++      A
Sbjct: 148 YIDCFFTIFLCCFLMWFFSFSWEYIWCHISLTSVATLVVACFCSSIEVCFFIYFYYFIWA 207

Query: 233 --SRSNTALIAPVAWHPRYKDSVIGCNLSGDM 262
             S     +++  +    Y   V    L    
Sbjct: 208 SLSIIYFVIVSSSSDLKGYLFWVFCFLLLVTP 239


>gi|119492017|ref|XP_001263503.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Neosartorya fischeri NRRL 181]
 gi|119411663|gb|EAW21606.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Neosartorya fischeri NRRL 181]
          Length = 2230

 Score = 37.1 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 48/158 (30%), Gaps = 16/158 (10%)

Query: 5   FVIYDYETFGRDVAL-DRPA-QFAGV--RVDRQWEKIESTEVFFCKPAD-DYLPDPEAVF 59
            + +D ET    +   D    Q   +   +D Q   I + E+      D +Y P PE   
Sbjct: 282 ILAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDINDFEYTPKPEYSG 341

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG-YNNIRFDDYYSRNIFYRNFYDSY 118
                P     +   E     R  +        +I  YN   FD  +          D Y
Sbjct: 342 -----PFMIFNEP-NERSVIERFFEHIKEAKPTVIATYNGDFFDWPFVEARASVLGIDMY 395

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT 156
                    R +  D+ ++ +    D   W +RD    
Sbjct: 396 ----KEIGFRKNSEDIYQSDHCVHMDCFAWVNRDSYLP 429


>gi|156549459|ref|XP_001603726.1| PREDICTED: similar to SJCHGC03520 protein, partial [Nasonia
           vitripennis]
          Length = 220

 Score = 37.1 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 41/217 (18%)

Query: 5   FVIYDYETFGRDVALD------RPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEA 57
           F++ D+E        D         +F  + V    W+  ++    + KP  +       
Sbjct: 21  FLVLDFEAT---CVKDVILKPQEIIEFPCLVVSTEDWQVKDAFHE-YVKPRINPKLSDFC 76

Query: 58  VFITGITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYY-SRNI 109
             +TGI  +    +     E   +   +    N       +  +   +        S+  
Sbjct: 77  TELTGIMQETLENEEH-FPEVFSKFCSWIEDGNYFDEKDKSAFVTCGDWDLKVMLPSQCE 135

Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
                   Y   W N  S + L+                           L D+     +
Sbjct: 136 LDNINVPDYLKEWINLKSSFCLMTKYYPR--------------------SLADMLRHLNM 175

Query: 170 EH-VNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205
           +     H    DV+    ++  + +K    F      
Sbjct: 176 KFQGKNHCGIDDVHNMTRVIQKLADKYKAEFTINTKI 212


>gi|311977964|ref|YP_003987084.1| putative ATP-dependent DNA helicase [Acanthamoeba polyphaga
            mimivirus]
 gi|308204914|gb|ADO18715.1| putative ATP-dependent DNA helicase [Acanthamoeba polyphaga
            mimivirus]
          Length = 1031

 Score = 37.1 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 49/213 (23%), Gaps = 51/213 (23%)

Query: 6    VIYDYETFGRDVALD--------------------------RPAQFAGVRVDRQWEKIES 39
            ++YD ET G                                   + A    +     +  
Sbjct: 841  LVYDLETTGAIENQGPFEHKPVIQRSQIYFRNNKYYAIIYPEIIEIAIKDYETGLIIMNK 900

Query: 40   TEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI 99
                                ITGITP   +       +    +     +   C +  +N 
Sbjct: 901  LVKANSTL------TLGIQNITGITPNMLVGQ-STLDQIKVELEDKLKLFTACNMLAHN- 952

Query: 100  RFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159
                    N F       Y+          D L V+      +    +            
Sbjct: 953  -------GNSFDNKIMLFYKLLNPQQVFFIDTLSVIPVHMESNSKLDK----------KN 995

Query: 160  LQDLALANGIEHVNAHDAKADVYATLALVWLIR 192
            L  +      E   AH A  DV A + ++  ++
Sbjct: 996  LSAIYYQLFKEKFQAHRAMNDVDALIKIMKYLK 1028


>gi|260437063|ref|ZP_05790879.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
 gi|292810372|gb|EFF69577.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
          Length = 362

 Score = 37.1 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 25/116 (21%), Gaps = 28/116 (24%)

Query: 2   TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
               + +D ET G   A         V  D +         +FC                
Sbjct: 22  KEKVLYFDIETTGFSPATSILYLIGCVYCDDEG---FKFRQWFC---------------- 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
                        E +       F    +  I+ YN   FD  +       +    
Sbjct: 63  --------DTPESEPDIISDFLDFVKSFS-VIVHYNGSSFDIPFIIKKCDIHHIPC 109


>gi|209694425|ref|YP_002262353.1| 2-oxoglutarate dehydrogenase E1 component [Aliivibrio salmonicida
           LFI1238]
 gi|208008376|emb|CAQ78531.1| 2-oxoglutarate dehydrogenase E1 component [Aliivibrio salmonicida
           LFI1238]
          Length = 938

 Score = 37.1 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 45/186 (24%), Gaps = 26/186 (13%)

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A  P     V    L       +D+    +  R    ++  +     P+    + K P  
Sbjct: 427 ADDPEAVAFVTRIALDYRNEFKRDVVIDLVCYRRHGHNEADEPNATQPLMYQKIKKHPT- 485

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P          R  ++ +   + +   R   +  +     +      +        +D 
Sbjct: 486 -PRKLYADTLIARQDLELETTTQLINEYRDALDHGEVVVKEWRPMQLHNVDWTPFLGHD- 543

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
                             +        F   RL EL  R     +P   S K      + 
Sbjct: 544 -------------WNIEWDNK------FDKTRLVELGQRVC--QYPE--SHKLHSRVNKM 580

Query: 424 RKKMLT 429
               ++
Sbjct: 581 CNDRIS 586


>gi|268552995|ref|XP_002634480.1| Hypothetical protein CBG10739 [Caenorhabditis briggsae]
 gi|187030858|emb|CAP30059.1| hypothetical protein CBG_10739 [Caenorhabditis briggsae AF16]
          Length = 279

 Score = 37.1 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 47/183 (25%), Gaps = 18/183 (9%)

Query: 1   MTNHF---VIYDYETF------GRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADD 50
           M   F   +I D+E        G  + +    +F  V      W +I      + +P + 
Sbjct: 60  MAQQFDYLLILDFEATCQENSLGPMLPVQEIIEFPVVQLSTSDWSEIRRFHQ-YVRPTEC 118

Query: 51  YLPDPEAVFITGITPQKALRDGVV------EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
                    +TGI  +       +        E+ +         N   +   +      
Sbjct: 119 PKLSSFCTTLTGIIQEMVDDKPTISNVLENFDEWMKE-DSRLEKGNFAFVTCGDWDLKVA 177

Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
            +    ++N      ++      +             +     +  +  G     + D+A
Sbjct: 178 LTNEAKFKNLKIPEYFTQWINVKKAYAAHTNHFAKGMTQLLKIYDLQHKGRHHSGIDDVA 237

Query: 165 LAN 167
              
Sbjct: 238 NIC 240


>gi|256076258|ref|XP_002574430.1| 3'-5' exonuclease [Schistosoma mansoni]
 gi|238659635|emb|CAZ30663.1| 3-5 exonuclease eri1, putative [Schistosoma mansoni]
          Length = 576

 Score = 37.1 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 53/196 (27%), Gaps = 20/196 (10%)

Query: 5   FVIYDYE---------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
            +I D E         T   D       +F  +    +  K  S    +CKP        
Sbjct: 294 LLIIDLEATCESKEKITTDADYP-HEIIEFPILLYSTRLRKCVSVFHAYCKPRLHPDLSE 352

Query: 56  EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
               +T I   +             +I ++    +       N R       +     F 
Sbjct: 353 FCTDLTQIQQIQVDNA-QPFPYVLLQIEEWLFKRHKLA----NKRCAIVCDCSADMSKFM 407

Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
                  +     W  +++   +        ++PSR     +  L DL L+        H
Sbjct: 408 RIQCRLSNISMPSW--VNIWINLTKSFRAFYKFPSRYRITLNVMLHDLGLSF---VGQRH 462

Query: 176 DAKADVYATLALVWLI 191
               D    L +V ++
Sbjct: 463 RGLDDAINILRIVRVL 478


>gi|56697793|ref|YP_168163.1| magnesium transporter [Ruegeria pomeroyi DSS-3]
 gi|56679530|gb|AAV96196.1| magnesium transporter [Ruegeria pomeroyi DSS-3]
          Length = 463

 Score = 37.1 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 18/99 (18%)

Query: 373 MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK---MLT 429
           M+ +       L      F   RL  L+ R            +   +  E  ++    L 
Sbjct: 45  MEPLHAADIADLLEQINTFDRARLIRLYDR--------EFDGEILSELDEGIREEVVRLL 96

Query: 430 RSR-IEEYKNKLQ-----SLSGEYKGDEGKEGLINALYE 462
               + E   +L       L  + +  +  E +++AL +
Sbjct: 97  NPDVLAEAVRELDSDDVVDLLEDLEESDH-ETILDALED 134


>gi|297663194|ref|XP_002810064.1| PREDICTED: nestin-like [Pongo abelii]
          Length = 1632

 Score = 37.1 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 53/203 (26%), Gaps = 8/203 (3%)

Query: 263 RVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKCPILMPIDYCKKEHFERWGIDH 321
                     L K        L+     +P+K +      I+ P++    +         
Sbjct: 704 EDENQEALRSLEKENQEPLKTLEEEDQSIPLKTLEEEDQSIVRPLETENHKSLRSLEEQD 763

Query: 322 KRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAP 381
           +  L  L    QQ       +                +  D   A          L++  
Sbjct: 764 QVSLRTLEKETQQRQRSLGEEDQMTLRPPEKVDPEPLKSLDQEIARPLENENQEFLKSLK 823

Query: 382 EQLSTLNLPFSDRRLPELFFRYRARNFPHTL--SEKEKQDWLEHRKKMLTRSRIEEYKNK 439
           E+            L  L  +   +    TL   E +   W     + + +  ++  + +
Sbjct: 824 EESVEAVKSLETEILESL--KSAGQENLETLKSPETQAPLWS---PEEINQGTMKPPEKE 878

Query: 440 LQSLSGEYKGDEGKEGLINALYE 462
           +Q      + ++    L+    +
Sbjct: 879 IQEPLESVEVNQETLRLLEEENQ 901


>gi|303244708|ref|ZP_07331039.1| DNA polymerase II, large subunit DP2 [Methanothermococcus okinawensis
            IH1]
 gi|302484922|gb|EFL47855.1| DNA polymerase II, large subunit DP2 [Methanothermococcus okinawensis
            IH1]
          Length = 1696

 Score = 37.1 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 410  HTLSEKEKQDWLEHRKKM-LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
              LS+ E ++  E  +   ++   I            + K ++GKE LI  + +Y++ 
Sbjct: 1083 EELSKDEYKNIWELIRVRGISDWIINNIPKDCLKEREKEKTNKGKEKLIKNITKYIKQ 1140


>gi|323495094|ref|ZP_08100181.1| 2-oxoglutarate dehydrogenase E1 component [Vibrio brasiliensis LMG
           20546]
 gi|323310645|gb|EGA63822.1| 2-oxoglutarate dehydrogenase E1 component [Vibrio brasiliensis LMG
           20546]
          Length = 941

 Score = 37.1 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 55/213 (25%), Gaps = 30/213 (14%)

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A  P     V    L       +D+    +  R    ++  +     P+    + K P  
Sbjct: 427 ADDPEAVAFVTRIALDYRNEFKRDVVIDLVCYRRHGHNEADEPNATQPLMYQKIKKHPT- 485

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
            P         ER         + +   R   +  +     +      S        +  
Sbjct: 486 -PRKLYADVLMERGDFGIDTATQLVNEYRDALDRGEVVVKEWRPMALHSVDWSPYLGH-- 542

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
                             +     N  F   RL EL  R     +P   S K +    + 
Sbjct: 543 ----------------DWD--VEWNNQFDKDRLVELGHRIC--QYPE--SHKLQSRVNKL 580

Query: 424 RKKM---LTRSRIEEYKNKLQSLSGEYKGDEGK 453
                  L+  +  ++    ++L+     D+GK
Sbjct: 581 YNDRTSMLSGEKAIDWGMA-ETLAYATLVDDGK 612


>gi|328463821|gb|EGF35364.1| hypothetical protein AAULH_12021 [Lactobacillus helveticus MTCC
          5463]
          Length = 51

 Score = 37.1 bits (84), Expect = 6.8,   Method: Composition-based stats.
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 1  MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ 33
          +   F +   ET   +   D+  + A  +  + 
Sbjct: 13 LPQDFSVVQIETTDLNPTRDQIIEIAANKYRKN 45


>gi|58268486|ref|XP_571399.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57227634|gb|AAW44092.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1572

 Score = 37.1 bits (84), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 50/153 (32%), Gaps = 17/153 (11%)

Query: 325 LENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQL 384
              L  L ++    +R + +  +      +    +       +   ++  +I     ++ 
Sbjct: 811 RTRLEGLAEKEGSSEREEELRKQVREMEVELEAIKGQAKDMHEETEELRGKIQLLN-KEK 869

Query: 385 STLNLPFSD-RRLPELFFRY---------RARNFPHTLSEKEKQDWLEHRKKMLTRSRIE 434
                 F D  R  E   +          RA N   TLS + K+             ++ 
Sbjct: 870 EEATKKFEDAERRVEEHQKLHQDSEHRAERAENDLETLSAELKEASNAQLA---ADEKLA 926

Query: 435 EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
           +Y+ +L+ L    +  E KE  ++     +Q +
Sbjct: 927 QYEKELEQL---DQLHEEKEKQLDQQQNEIQEL 956


>gi|322781953|gb|EFZ10309.1| hypothetical protein SINV_07054 [Solenopsis invicta]
          Length = 640

 Score = 37.1 bits (84), Expect = 6.9,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 31/221 (14%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
            V+ D ET G ++  D   Q A  +  +          F             A     +T
Sbjct: 371 IVLLDLETSGFEMNCD-ILQIAA-KYGKN--------SFDIYVNPVQDISVSASQANDLT 420

Query: 65  P--QKALRDG-----VVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYD 116
               + + +G     V        +H + +     C I  +N+ FD         +   +
Sbjct: 421 SCYGELMYNGRQVPSVPIRAALGSLHGWLTSLGKKCCIATHNLSFDGPRFMKQVIKCSLE 480

Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
           +         S  D L V+R             +   G  +  +  LA A  I  V AH+
Sbjct: 481 NEFSEVV--YSFVDTLQVIRNS-----------TGRKGKGACSISGLANALNISTVGAHN 527

Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
           A  D      ++  ++    +L      +     +      
Sbjct: 528 ASRDCVILSKILNKLKITTQQLLTNSKTFSEHTFIWNTQQK 568


>gi|38683650|gb|AAR26827.1| FirrV-1-A3 [Feldmannia irregularis virus a]
          Length = 238

 Score = 37.1 bits (84), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 14/44 (31%)

Query: 6  VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
             D ET   D +     + A V  D      +S  +    P +
Sbjct: 13 FWIDMETSSLDFSQSEVLEVALVVTDHHLNVWDSLHLVIHHPIN 56


>gi|20090030|ref|NP_616105.1| chromosome segregation protein [Methanosarcina acetivorans C2A]
 gi|49036451|sp|Q8TRL1|RAD50_METAC RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|19914999|gb|AAM04585.1| purine NTPase [Methanosarcina acetivorans C2A]
          Length = 1074

 Score = 36.7 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 70/202 (34%), Gaps = 17/202 (8%)

Query: 270 SVQLAKRLFTSHDELKGLVPVP-IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENL 328
                +RL   +D+LK L     + +  L    + +     K+   ++   + ++ L   
Sbjct: 724 IENYGERLGELNDKLKALAEKENLSKEKLKALELALEAAQKKENEAKKAHSESEKLLGQA 783

Query: 329 TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLN 388
             L+      +  K   ++   +     +     GF      +  +RI +        L 
Sbjct: 784 KKLQANLLSMENIKHKISELEAAIRNLAEK---VGFLDREILERSERIRQ--------LG 832

Query: 389 LPFSDRRLPELF-FRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR--IEEYKNKLQSLSG 445
                 RL EL   R +       ++E  ++   E  K  L +    +E    +L+ L  
Sbjct: 833 EKLEGNRLSELQQKRAQFEQAQAKITENIREKTEE--KDSLLKEIGMLENSLKRLRELRK 890

Query: 446 EYKGDEGKEGLINALYEYLQWV 467
           E K  E ++  + A+Y   + +
Sbjct: 891 ELKALENRQLYLEAVYSNAEEL 912


>gi|307204783|gb|EFN83341.1| Oligoribonuclease, mitochondrial [Harpegnathos saltator]
          Length = 168

 Score = 36.7 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 13/40 (32%)

Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
           G DV  +   + A +  D     ++          ++ L
Sbjct: 2  TGLDVENNHILEIACLITDENLISVDDYLNLIIYQPNEIL 41


>gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
 gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
          Length = 898

 Score = 36.7 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 2   TNHFVIYDYETFGRDVALDRPA 23
            +  V +D ET G D   D+  
Sbjct: 326 KDTLVAFDTETTGLDTRTDKMV 347


>gi|115649148|ref|XP_001176624.1| PREDICTED: similar to EF-hand calcium binding domain 5, partial
           [Strongylocentrotus purpuratus]
 gi|115673254|ref|XP_793698.2| PREDICTED: similar to EF-hand calcium binding domain 5, partial
           [Strongylocentrotus purpuratus]
          Length = 1517

 Score = 36.7 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 27/108 (25%)

Query: 382 EQLSTLNLPFSDRRLPELFFRYRAR--------NFPHTLSEKEKQDWLEHRK-------- 425
           ++L      F D RL     R +A              L  +EK     H +        
Sbjct: 225 DELKQYVFSFEDNRLA----RVKAETRRKREQMERTEALQTQEKSRRSAHIRRQYKDWLL 280

Query: 426 -------KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
                  +   ++ +  ++  L++L  E+K        ++ L    + 
Sbjct: 281 DPEGVVEQRAIQNSLTSFREVLENLPEEFKKASDFLAELDKLDANEEQ 328


>gi|325475136|gb|EGC78321.1| fic family protein [Treponema denticola F0402]
          Length = 377

 Score = 36.7 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 383 QLSTLNLPFSDRRLPELF----FRYRARNFPHTLSEKEKQDWLEHR-KKMLTRSRIEEYK 437
           +    +  + D  +  L     F   A N   +L        + H  K+ +  +RIE  +
Sbjct: 23  EKINHDFSWEDTSINTLLEKASFHLGALNSFSSLVPDADMFIIMHIFKEAVISNRIEGTR 82

Query: 438 NKLQS-LSGEYKGDEGKEGLINALYEYLQWV 467
             ++  L+ +   D  K      ++ Y++ +
Sbjct: 83  TNIEEALNEQDNLDPEKRNDWQEVHNYVKAM 113


>gi|42525751|ref|NP_970849.1| fic family protein [Treponema denticola ATCC 35405]
 gi|41815762|gb|AAS10730.1| fic family protein [Treponema denticola ATCC 35405]
          Length = 377

 Score = 36.7 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 383 QLSTLNLPFSDRRLPELF----FRYRARNFPHTLSEKEKQDWLEHR-KKMLTRSRIEEYK 437
           +    +  + D  +  L     F   A N   +L        + H  K+ +  +RIE  +
Sbjct: 23  EKINHDFSWEDTSINTLLEKASFHLGALNSFSSLVPDADMFIIMHIFKEAVISNRIEGTR 82

Query: 438 NKLQS-LSGEYKGDEGKEGLINALYEYLQWV 467
             ++  L+ +   D  K      ++ Y++ +
Sbjct: 83  TNIEEALNEQDNLDPEKRNDWQEVHNYVKAM 113


>gi|308161170|gb|EFO63628.1| Hypothetical protein GLP15_4673 [Giardia lamblia P15]
          Length = 215

 Score = 36.7 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 398 ELFFRYR-----ARNFPHTLSEK--EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGD 450
           +L   Y      AR +   LS    E        ++ +++  + +   K   L  + + D
Sbjct: 57  DLAKMYLCLEKEARKYSSLLSVTCVEAARQKRLLQERISQISLVDAMKKTNELLNKMQID 116

Query: 451 EGKEGL-INALYEYLQ 465
             K    ++ + ++++
Sbjct: 117 GEKLKETMDEIQQHVE 132


>gi|15239167|ref|NP_196173.1| SDN2 (SMALL RNA DEGRADING NUCLEASE 2); exonuclease/ nucleic acid
           binding [Arabidopsis thaliana]
 gi|75333751|sp|Q9FFG1|SDN2_ARATH RecName: Full=Small RNA degrading nuclease 2
 gi|10178131|dbj|BAB11543.1| unnamed protein product [Arabidopsis thaliana]
 gi|26451907|dbj|BAC43046.1| unknown protein [Arabidopsis thaliana]
 gi|32441256|gb|AAP81803.1| At5g05540 [Arabidopsis thaliana]
 gi|332003502|gb|AED90885.1| small RNA degrading nuclease 2 [Arabidopsis thaliana]
          Length = 466

 Score = 36.7 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 51/160 (31%), Gaps = 18/160 (11%)

Query: 22  PAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
             + A V  DR  + I +       KP    +      FITG+T Q   +  +   +   
Sbjct: 159 VVRVAAV--DRDLKVILDEF----VKPNQPVV--DYRTFITGLTAQDLEKATISVVDIQE 210

Query: 81  RIHQFFSVPNTCIIGYNNIRFDDYYSRNI--------FYRNFYDSYRWSWDNGNSRWDLL 132
           ++  F S  +T ++G +          +          ++  YD  R          + L
Sbjct: 211 KLLMFISE-DTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLRLKRPSLNYL 269

Query: 133 DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
                 Y    +G+      D   + KL    L NG E  
Sbjct: 270 CKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNGAETS 309


>gi|307154494|ref|YP_003889878.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
 gi|306984722|gb|ADN16603.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
          Length = 291

 Score = 36.7 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 27/188 (14%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
           +I D ET G D    +  +   V      + + S          D     +A +I  I  
Sbjct: 8   LIIDTETDG-DKDHPKVIEVGAVLYSVTGQCMLSCGSSLITTDADIN---QAYWINKIPI 63

Query: 66  QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
           +        +  F   +    +  +   I  +N  FD      + +   +D         
Sbjct: 64  EATHLCPQQQNYFLNWLQA--AYVSADAIIAHNANFDKELITALTWAKKWDKLWL----- 116

Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
                             D   +P + +G     L  L+   GI     H A  D     
Sbjct: 117 --------------CTYKDFELFPEQYNGKRD--LISLSQFYGIGISCTHRAIDDCLLLK 160

Query: 186 ALVWLIRE 193
            +   ++ 
Sbjct: 161 EVFNRVQN 168


>gi|213156039|ref|YP_002318084.1| hypothetical protein AB57_0681 [Acinetobacter baumannii AB0057]
 gi|215484634|ref|YP_002326869.1| hypothetical protein ABBFA_002983 [Acinetobacter baumannii
           AB307-0294]
 gi|239500715|ref|ZP_04660025.1| hypothetical protein AbauAB_00240 [Acinetobacter baumannii AB900]
 gi|301345774|ref|ZP_07226515.1| hypothetical protein AbauAB0_06005 [Acinetobacter baumannii AB056]
 gi|301511168|ref|ZP_07236405.1| hypothetical protein AbauAB05_06298 [Acinetobacter baumannii AB058]
 gi|301594977|ref|ZP_07239985.1| hypothetical protein AbauAB059_04186 [Acinetobacter baumannii
           AB059]
 gi|332856910|ref|ZP_08436319.1| hypothetical protein HMPREF0021_03911 [Acinetobacter baumannii
           6013150]
 gi|332867186|ref|ZP_08437451.1| hypothetical protein HMPREF0020_01062 [Acinetobacter baumannii
           6013113]
 gi|213055199|gb|ACJ40101.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
 gi|213988684|gb|ACJ58983.1| hypothetical protein ABBFA_002983 [Acinetobacter baumannii
           AB307-0294]
 gi|332726964|gb|EGJ58469.1| hypothetical protein HMPREF0021_03911 [Acinetobacter baumannii
           6013150]
 gi|332734125|gb|EGJ65257.1| hypothetical protein HMPREF0020_01062 [Acinetobacter baumannii
           6013113]
          Length = 272

 Score = 36.7 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 56/219 (25%), Gaps = 28/219 (12%)

Query: 6   VIYDYET-FGRDVALDRPAQFAGVRVDRQWEK--IESTEVFFCKPADD----YLPDPEAV 58
           +++D ET                        +  +E       +         LP  E V
Sbjct: 6   LVFDIETLTDLKA--------GAHLYHLDLPEADVEQALTKIRRQESGMDFQRLPLHEIV 57

Query: 59  FITGITPQKA-------LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            I+G+   ++        R+   EAE  ++    F   +  ++ +N  +FD         
Sbjct: 58  CISGLWIDESGFRLFSFSREHYSEAEILQKFLSIFDKRHPTLVSWNGSQFDLPVILFRAM 117

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP-DGIQWPSRDDGATSFKLQDLALANGIE 170
            +   +               +  +  Y     D +   +  +G    KL D+A   G+ 
Sbjct: 118 YHGLSAPGLFDQGELDSQKRFNNYQNRYHHRHIDLMDVMAMFNGRNFQKLDDVACILGLP 177

Query: 171 HVNAHDAKA-----DVYATLALVWLIREKKPKLFEYLYD 204
                              L L           +     
Sbjct: 178 GKRGESGYHVPEYVRTEQWLKLTSYCEGDVLNTWFIYLR 216


>gi|301610350|ref|XP_002934718.1| PREDICTED: uncharacterized protein KIAA1211-like [Xenopus
           (Silurana) tropicalis]
          Length = 1190

 Score = 36.7 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 414 EKEKQDWLEHRKK---MLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
           E+  Q+  EHR++    L     ++   K + L  E +  +  E ++  L EY
Sbjct: 320 EQILQELEEHRRQEQLKLREREEQKAIQKAEQLRLEEEKRQRAEQILQELEEY 372


>gi|256811490|ref|YP_003128859.1| hypothetical protein Mefer_1556 [Methanocaldococcus fervens AG86]
 gi|256794690|gb|ACV25359.1| hypothetical protein Mefer_1556 [Methanocaldococcus fervens AG86]
          Length = 837

 Score = 36.7 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 384 LSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
           L  +     D+ L EL  +Y        L+ ++     ++ +++     + +  N+L  L
Sbjct: 338 LKEIQKTKDDKTLAELAKKY-------GLTYEQIVKIHDYLQRVDLDKGLPDNTNELDRL 390

Query: 444 SGEYKGDEGKEGLINALYEYLQ 465
                 ++ + G++  + + ++
Sbjct: 391 I---SINKDQRGILETIKQDIE 409


>gi|193076368|gb|ABO11029.2| hypothetical protein A1S_0576 [Acinetobacter baumannii ATCC 17978]
          Length = 272

 Score = 36.7 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 56/219 (25%), Gaps = 28/219 (12%)

Query: 6   VIYDYET-FGRDVALDRPAQFAGVRVDRQWEK--IESTEVFFCKPADD----YLPDPEAV 58
           +++D ET                        +  +E       +         LP  E V
Sbjct: 6   LVFDIETLTDLKA--------GAHLYHLDLPETDVEQALTKIRRQESGMDFQRLPLHEIV 57

Query: 59  FITGITPQKA-------LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            I+G+   ++        R+   EAE  ++    F   +  ++ +N  +FD         
Sbjct: 58  CISGLWIDESGFRLFSFSREHYSEAEILQKFLSIFDKRHPTLVSWNGSQFDLPVILFRAM 117

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP-DGIQWPSRDDGATSFKLQDLALANGIE 170
            +   +               +  +  Y     D +   +  +G    KL D+A   G+ 
Sbjct: 118 YHGLSAPGLFDQGELDSQKRFNNYQNRYHHRHIDLMDVMAMFNGRNFQKLDDVACILGLP 177

Query: 171 HVNAHDAKA-----DVYATLALVWLIREKKPKLFEYLYD 204
                              L L           +     
Sbjct: 178 GKRGESGYHVPEYVRTEQWLKLTSYCEGDVLNTWFIYLR 216


>gi|240949546|ref|ZP_04753886.1| putative binding protein [Actinobacillus minor NM305]
 gi|240296119|gb|EER46780.1| putative binding protein [Actinobacillus minor NM305]
          Length = 524

 Score = 36.7 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 20/247 (8%)

Query: 191 IREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYK 250
           +   +   F+ +     +N +   +D        HV  +    R  T         P+ +
Sbjct: 241 VARDESLFFQRVKYVLLRNVVDTSVDFIENPTASHVQDIVYLPRLCTYFYEFNFQDPQLQ 300

Query: 251 DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP--------IKEVHLN-KCP 301
              I   L   +   +      L             +            + ++ +N   P
Sbjct: 301 KPEIRRALKAMIFPARIKGENGLLNHSVLPKTMRAEVENRWSPVVVEQLLTQMGINLNNP 360

Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
           + + + Y  +    +      R L    L+R +    D         +   +  +    +
Sbjct: 361 LRLNVIYDTQGQHPQIAKQMMRALAQSDLIRVEPQEVDW--NTLLNHHAQKNYQLIRSGW 418

Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
              +AD    +  +    +P+  +  +    D  L +L           TLSEKE++D +
Sbjct: 419 CADYADPAAFLW-KFHSQSPDNKNGYHNAEVDSALEKLQK--------STLSEKEREDLI 469

Query: 422 EHRKKML 428
           ++  + L
Sbjct: 470 QYIAQQL 476


>gi|213626350|gb|AAI70436.1| Larg protein [Xenopus laevis]
          Length = 1431

 Score = 36.7 bits (83), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 324 CLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ--DVDSQLYDGFFADVDRQIMDRILRTAP 381
           C +N+ LL+        F       +  ++    + + LY    +   R++     +   
Sbjct: 340 CFQNMDLLKSHPAHLAVFIHHVVSQFDPAALLCYLYADLYQQTNSKETRRVFMEFNQFFL 399

Query: 382 EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRS---RIEEYKN 438
           E+ + L +P  D    EL  R      P  + E+  + +++  ++ L+      +E++K 
Sbjct: 400 ERAANLKVPVPDDVALELEKR-----RPELIPEELHRQYIQTVQERLSEDVKKNLEDFKQ 454

Query: 439 K 439
           K
Sbjct: 455 K 455


>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
 gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
          Length = 946

 Score = 36.7 bits (83), Expect = 8.5,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 36/135 (26%), Gaps = 32/135 (23%)

Query: 1   MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE---- 56
           M    V +D ET G +         A                   K    Y+P PE    
Sbjct: 370 MKQTSVCFDTETTGLNPLTAELVGIA-------------FSWEASK--GFYIPFPEDQDQ 414

Query: 57  AVFITGITPQKALRDGVVEAEFSRRI-------HQFFSVPNTCIIGYNNIRFDDYYSRNI 109
           A  +     ++       E E   +I        +     N  I G        +Y  N 
Sbjct: 415 AQEL----IEQLR--PFFEDEKIEKIGQNLKYDIKVLRKYNLIIKGAYFDTMLAHYLINP 468

Query: 110 FYRNFYDSYRWSWDN 124
             R+  D    ++ N
Sbjct: 469 DMRHNMDVLAETYLN 483


>gi|332852707|ref|ZP_08434341.1| exonuclease [Acinetobacter baumannii 6013150]
 gi|332871089|ref|ZP_08439702.1| exonuclease [Acinetobacter baumannii 6013113]
 gi|332729060|gb|EGJ60408.1| exonuclease [Acinetobacter baumannii 6013150]
 gi|332731849|gb|EGJ63129.1| exonuclease [Acinetobacter baumannii 6013113]
          Length = 226

 Score = 36.7 bits (83), Expect = 8.6,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 12/105 (11%)

Query: 6   VIYDYETFGRDVALDRPAQFAGVRVD-RQWEK-IESTEVFFCKPADDYLPDPEAVFITGI 63
           +I D ET   +     P + A         +  I     F    +     D EA+ +  I
Sbjct: 4   IILDTET---NKLNGYPIEIAYTPFSFENGQIQIHKDYAFSRYFSCPEPIDLEAMAVHNI 60

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
                      EA       +F        +G+N        ++ 
Sbjct: 61  IEADIEGQPSCEAFRLPEGVEFI-------VGHNIDYDIKALNKC 98


>gi|15668518|ref|NP_247316.1| hypothetical protein MJ_0343 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495914|sp|Q57789|Y343_METJA RecName: Full=Uncharacterized protein MJ0343
 gi|1591057|gb|AAB98333.1| hypothetical protein MJ_0343 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 849

 Score = 36.7 bits (83), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 382 EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQ 441
           + L  +     D+ L EL  +Y        L+ ++     ++ +++     + +  N+L 
Sbjct: 347 KALREIQKTKDDKTLAELAKKY-------GLTYEQIVKIHDYLQRVDLDKGLPDNTNELD 399

Query: 442 SLSGEYKGDEGKEGLINALYEYLQ 465
            L      ++ ++G++  + + ++
Sbjct: 400 RLI---SINKDQKGILETIKQDIE 420


>gi|330959724|gb|EGH59984.1| oligoribonuclease [Pseudomonas syringae pv. maculicola str.
          ES4326]
          Length = 200

 Score = 36.7 bits (83), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 6/52 (11%)

Query: 7  IYDYETFGRDVALDR------PAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
            D  T G     D         +      D  +  + ST +    P    L
Sbjct: 20 WLDLATTGFTELFDYEVYDHLILEIGAAVTDENFNVLASTSIVIQHPKRLVL 71


>gi|121705378|ref|XP_001270952.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Aspergillus clavatus NRRL 1]
 gi|119399098|gb|EAW09526.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Aspergillus clavatus NRRL 1]
          Length = 2229

 Score = 36.7 bits (83), Expect = 8.7,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 41/164 (25%), Gaps = 28/164 (17%)

Query: 5   FVIYDYETFGRDVAL-DRPA-QFAGVRVDRQWE---------KIESTEVFFCKPADDYLP 53
            + +D ET    +   D    Q   +      +           E    F   P  +Y  
Sbjct: 282 ILAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDINDFEYTPKPEY-- 339

Query: 54  DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG-YNNIRFDDYYSRNIFYR 112
                   G  P     +   E     R  +        +I  YN   FD  +       
Sbjct: 340 -------NG--PFMIFNEP-NERGLLERFFEHIKEAKPTVIATYNGDFFDWPFVEARASV 389

Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT 156
              D Y         R +  D+ ++      D   W +RD    
Sbjct: 390 LGIDMY----KEIGFRRNSEDIYQSDNCVHMDCFAWVNRDSYLP 429


>gi|269960709|ref|ZP_06175081.1| 2-oxoglutarate dehydrogenase, E1 component [Vibrio harveyi 1DA3]
 gi|269834786|gb|EEZ88873.1| 2-oxoglutarate dehydrogenase, E1 component [Vibrio harveyi 1DA3]
          Length = 941

 Score = 36.7 bits (83), Expect = 8.8,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 48/184 (26%), Gaps = 26/184 (14%)

Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
           A  P     V    L       +D+    +  R    ++  +     P+    + K P  
Sbjct: 427 ADDPEAVAFVTRIALDYRNEFKRDVVIDLVCYRRHGHNEADEPNATQPLMYQKIKKHPT- 485

Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
                       R         +N + +   T L + ++   +K      +     L+  
Sbjct: 486 -----------PRKLYADVLIDKNESDIEVATQLVNEYRDALDKGEVVVKEWRPMALHSV 534

Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
            ++       D       +        F   RL EL  R     +P   S K +    + 
Sbjct: 535 DWSPYLGHDWD----VEWDNK------FDSTRLKELGQRLI--QYPD--SHKLQSRVNKL 580

Query: 424 RKKM 427
               
Sbjct: 581 YNDR 584


>gi|255523821|ref|ZP_05390786.1| Exonuclease RNase T and DNA polymerase III [Clostridium
          carboxidivorans P7]
 gi|255512524|gb|EET88799.1| Exonuclease RNase T and DNA polymerase III [Clostridium
          carboxidivorans P7]
          Length = 998

 Score = 36.7 bits (83), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 16/94 (17%)

Query: 2  TNHF------VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD- 54
             +      +  D ET   D   ++  +   V++  +  +I            D L + 
Sbjct: 1  MKTYSVLNDVIFLDIETTHTD---NKVIRICAVKI--KNNEISRFSSL---VNPDKLVEL 52

Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV 88
           ++  + GIT ++         E   ++  F   
Sbjct: 53 SDSQLLRGITQKEL-DSSCNLKEVLNKLQTFIEQ 85


>gi|262377435|ref|ZP_06070658.1| 3'-5' exonuclease [Acinetobacter lwoffii SH145]
 gi|262307665|gb|EEY88805.1| 3'-5' exonuclease [Acinetobacter lwoffii SH145]
          Length = 272

 Score = 36.7 bits (83), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 1/98 (1%)

Query: 74  VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLD 133
            EAE  ++    F   +  ++ +N  +FD          +   +               +
Sbjct: 80  SEAEILKKFLSIFDKRHPTLVSWNGSQFDLPVILYRAMYHGLSAPSLFDQGEIDTQKRYN 139

Query: 134 VMRAIYAFSP-DGIQWPSRDDGATSFKLQDLALANGIE 170
             +  Y     D +   +        KL D+A   G  
Sbjct: 140 NYQNRYHHRHVDLMDVMAMFHARHFQKLDDVAHLLGYP 177


>gi|169237521|ref|YP_001690725.1| hypothetical protein OE5285R [Halobacterium salinarum R1]
 gi|167728748|emb|CAP15607.1| hypothetical protein OE5285R [Halobacterium salinarum R1]
          Length = 214

 Score = 36.7 bits (83), Expect = 9.0,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 31/159 (19%)

Query: 8   YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI----TGI 63
           +D ET   D              DR                        A  +    T I
Sbjct: 16  FDIETTHYDPTEGEIVSIGIAVHDR------------------------ATAVERAETHI 51

Query: 64  TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
             +   RD     + +  I          ++ +N   FD  +  +    +   + R + D
Sbjct: 52  LHRTVDRDEPALVQAAYDILD--ESSAEFLVTFNGRDFDFGFCDDRLAHHGVQTSRPTLD 109

Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
              +  DLL   R   A   +  +WPS ++   ++  + 
Sbjct: 110 TPTTHLDLLHDDRKAKADQRN-EKWPSLEEALRAYGYET 147


>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1]
 gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1]
          Length = 905

 Score = 36.7 bits (83), Expect = 9.1,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 9/22 (40%)

Query: 2   TNHFVIYDYETFGRDVALDRPA 23
               V +D ET G D   D+  
Sbjct: 333 PETIVAFDTETTGLDYEKDKLV 354


>gi|70999892|ref|XP_754663.1| DNA polymerase epsilon, catalytic subunit A/POL2 [Aspergillus
           fumigatus Af293]
 gi|74674212|sp|Q4WXH8|DPOE_ASPFU RecName: Full=DNA polymerase epsilon catalytic subunit A; AltName:
           Full=DNA polymerase II subunit A
 gi|66852300|gb|EAL92625.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Aspergillus fumigatus Af293]
 gi|159127677|gb|EDP52792.1| DNA polymerase epsilon, catalytic subunit A/POL2, putative
           [Aspergillus fumigatus A1163]
          Length = 2230

 Score = 36.7 bits (83), Expect = 9.1,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 48/158 (30%), Gaps = 16/158 (10%)

Query: 5   FVIYDYETFGRDVAL-DRPA-QFAGV--RVDRQWEKIESTEVFFCKPAD-DYLPDPEAVF 59
            + +D ET    +   D    Q   +   +D Q   I + E+      D +Y P PE   
Sbjct: 282 ILAFDIETTKLPLKFPDSVIDQIMMISYMIDGQGFLITNREIVSEDIRDFEYTPKPEYSG 341

Query: 60  ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG-YNNIRFDDYYSRNIFYRNFYDSY 118
                P     +   E     R  +        +I  YN   FD  +          D Y
Sbjct: 342 -----PFMIFNEP-NERSVIERFFEHIKEAKPTVIATYNGDFFDWPFVEARASVLGIDMY 395

Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT 156
                    R +  D+ ++ +    D   W +RD    
Sbjct: 396 ----KEIGFRKNSEDIYQSDHCVHMDCFAWVNRDSYLP 429


>gi|255320869|ref|ZP_05362043.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
 gi|262380238|ref|ZP_06073393.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255302038|gb|EET81281.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
 gi|262298432|gb|EEY86346.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 272

 Score = 36.7 bits (83), Expect = 9.3,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 52/184 (28%), Gaps = 23/184 (12%)

Query: 6   VIYDYET-FGRDVALDRPAQFAGVRVDRQW--EKIESTEVFFCKPADD----YLPDPEAV 58
           +I+D ET                   +     +++E   +   +         LP  E V
Sbjct: 6   LIFDIETLTDLKA--------GAHLYNLDLPDDELEQALIKLRRQEAGTDFQRLPLHEIV 57

Query: 59  FI-------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            I        G+      ++   EAE  R+    F   +  ++ +N  +FD         
Sbjct: 58  CISGLWVDEHGMRLFSFSQEQYAEAEILRKFLSIFEKRHPTLVSWNGSQFDLPVILFRTM 117

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP-DGIQWPSRDDGATSFKLQDLALANGIE 170
            +   +               +  +  Y     D +   +  +G    KL D A   G  
Sbjct: 118 YHGLSAPSLFDQGEIDIQKRYNNYQNRYHHRHVDLMDVMAMFNGRNFQKLDDAAQLLGYP 177

Query: 171 HVNA 174
              A
Sbjct: 178 GKRA 181


>gi|312111707|ref|YP_003990023.1| chromosome segregation protein SMC [Geobacillus sp. Y4.1MC1]
 gi|311216808|gb|ADP75412.1| chromosome segregation protein SMC [Geobacillus sp. Y4.1MC1]
          Length = 1187

 Score = 36.3 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 88/283 (31%), Gaps = 34/283 (12%)

Query: 208 KNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQD 267
           K+ L K  +++     + V  +    +  T+L   +A H +  +  +   L  +    + 
Sbjct: 213 KDYLEKRDELERFEVALMVYDIEQLHQQWTSLKQLLAQH-QNDEIQLSAALQKEEAEIEQ 271

Query: 268 L---------DSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWG 318
           L             L + L  + +EL+ L           K  +L        ++ ++  
Sbjct: 272 LRDHITALDESIDGLQQVLLVASEELEKLE---------GKKEVLKERKKNAAQYKKQLE 322

Query: 319 IDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILR 378
                  E    L Q         +   +  +    ++  +       + + +     L+
Sbjct: 323 DTITSLTEKKERLEQALAREHEQLSALKQAVSEIQAELSEKQASLSAYNANIEEKIEQLK 382

Query: 379 TAPEQLSTLNLPFSDRR--LPELFFRY------RARNFPHTLSE-----KEKQDWLEHRK 425
           +   +L        + R  L  L  +        A      L E     ++     E R+
Sbjct: 383 SDYIELVHEQASLKNERSHLQTLLEKLQAKQTALAEENRKYLDERKYLKEQYAKLDEKRQ 442

Query: 426 --KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
             + + + +    + K   L+      E KE L+   Y+YLQ 
Sbjct: 443 QIEKMLQQKETLLRQKTDELAAMKADLEKKESLLYQAYQYLQQ 485


>gi|308387361|ref|NP_001165426.2| cdc42 binding protein kinase beta (DMPK-like) [Xenopus laevis]
          Length = 1666

 Score = 36.3 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 16/149 (10%)

Query: 327 NLTLLRQQTNLRDRFKAIYNKPYTSSSQ--DVDSQLYDGFFADVDRQIMDRILRTAPEQL 384
               +R+     +R K   +       Q  DV +   +   +    + +++  R   ++ 
Sbjct: 483 RDKEIRKLNEEIERLKNKISDSNRIERQLEDVVALRQNYDDSTSKMKGLEKQHRALKQER 542

Query: 385 STLNLPFSD--RRLPELFFRYRARNFPHTLSEKEK----QDWLEHRKKMLT--------R 430
             L   F+D   RL       +  N    L+++E     +   E R + L          
Sbjct: 543 DDLQKQFTDAQERLKSQTKELKDANQHRKLTQQEFAELNEKMAELRSQKLKLSRQLRDKE 602

Query: 431 SRIEEYKNKLQSLSGEYKGDEGKEGLINA 459
             +E    K+ ++  E++  E     + A
Sbjct: 603 EELELVMQKIDTMRQEHRKSEKARKELEA 631


>gi|75908721|ref|YP_323017.1| heat shock protein DnaJ-like protein [Anabaena variabilis ATCC
           29413]
 gi|75702446|gb|ABA22122.1| Heat shock protein DnaJ-like protein [Anabaena variabilis ATCC
           29413]
          Length = 235

 Score = 36.3 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 20/161 (12%)

Query: 316 RWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDR 375
           +  ++H   L+      Q    +   + +      S+    D +      A  +    ++
Sbjct: 5   KKDLNHYEILKVSPKASQAEIKQAYRRLVKLFHPDSNQDTADKEQIIRINAAYEILGDNQ 64

Query: 376 ILRTAPEQLSTLNLPFSDRRL--------PELFFRYRARNFPHTLSEKEKQDWLEHRKK- 426
                 E+L   +  F   RL             R   ++      +++ ++WL    + 
Sbjct: 65  SRLNYDEELRDKSQKFKGDRLQRTTSAQKEYQVKRKSGKDA-----DEQVEEWLRLVYQP 119

Query: 427 --MLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
              L  + +   + +++ L+ +   DE    L++   EYLQ
Sbjct: 120 VNRLLSTILSSLEEQIEELAADPFDDE----LLDEFQEYLQ 156


>gi|312077059|ref|XP_003141137.1| hypothetical protein LOAG_05552 [Loa loa]
 gi|307763699|gb|EFO22933.1| hypothetical protein LOAG_05552 [Loa loa]
          Length = 1226

 Score = 36.3 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 67/178 (37%), Gaps = 12/178 (6%)

Query: 285 KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKR----CLENLTLLRQQTNLRDR 340
           K      I+++  N+  +   +    +   +   ++ KR     LEN     +  + +  
Sbjct: 654 KKWDENAIRKLKENRVKLQDELQQLHRTRKKELDVEMKRNQLIHLENRLKSTRNEHTKIT 713

Query: 341 FKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
            + +        + + +  L      ++++++ +R+++   E+L       +D    E  
Sbjct: 714 SQTLKKLEQDLETLNSELSLIQPRIDEIEQRMAERVVQ--IEKLQHKRNVITDEVFREFC 771

Query: 401 FRYRARNFPHTLSEKEKQ-DWLEHRKKML--TRSRIEEYKNKLQSLSGEYKGDEGKEG 455
            R    N       ++++  + E  +  L    + ++  +N+L  L  E K  + K+ 
Sbjct: 772 QRI---NIKDIRQYEQREMRFHEEMQDQLKKFDNELDRLRNELDYLKSEDKRLKEKQE 826


>gi|184156901|ref|YP_001845240.1| 3'-5' exonuclease [Acinetobacter baumannii ACICU]
 gi|332874022|ref|ZP_08441957.1| hypothetical protein HMPREF0022_01569 [Acinetobacter baumannii
           6014059]
 gi|183208495|gb|ACC55893.1| predicted 3'-5' exonuclease [Acinetobacter baumannii ACICU]
 gi|322506797|gb|ADX02251.1| 3'-5' exonuclease [Acinetobacter baumannii 1656-2]
 gi|323516666|gb|ADX91047.1| hypothetical protein ABTW07_0610 [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737763|gb|EGJ68655.1| hypothetical protein HMPREF0022_01569 [Acinetobacter baumannii
           6014059]
          Length = 272

 Score = 36.3 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 56/219 (25%), Gaps = 28/219 (12%)

Query: 6   VIYDYET-FGRDVALDRPAQFAGVRVDRQWEK--IESTEVFFCKPADD----YLPDPEAV 58
           +++D ET                        +  +E       +         LP  E V
Sbjct: 6   LVFDIETLTDLKA--------GAHLYHLDLPEADVEQALTKIRRQESGMDFQRLPLHEIV 57

Query: 59  FITGITPQKA-------LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            I+G+   ++        R+   EAE  ++    F   +  ++ +N  +FD         
Sbjct: 58  CISGLWIDESGFRLFSFSREHYSEAEILQKFLSIFDKRHPTLVSWNGSQFDLPVILFRAM 117

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP-DGIQWPSRDDGATSFKLQDLALANGIE 170
            +   +               +  +  Y     D +   +  +G    KL D+A   G+ 
Sbjct: 118 YHGLSAPGLFDQGELDSQKRFNNYQNRYHHRHIDLMDVMAMFNGRNFQKLDDVACILGLP 177

Query: 171 HVNAHDAKA-----DVYATLALVWLIREKKPKLFEYLYD 204
                              L L           +     
Sbjct: 178 GKRGESGYHVPEYVRTEQWLKLTSYCEGDVLNTWFIYLR 216


>gi|304321519|ref|YP_003855162.1| hypothetical protein PB2503_09839 [Parvularcula bermudensis
           HTCC2503]
 gi|303300421|gb|ADM10020.1| hypothetical protein PB2503_09839 [Parvularcula bermudensis
           HTCC2503]
          Length = 179

 Score = 36.3 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 13/132 (9%)

Query: 5   FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE---AVFIT 61
               D E  G       P +   V       +         KPAD +        A  + 
Sbjct: 10  IAFIDIEASGLGP-HSWPIEVGWVF------ETGDAHALLVKPADQWSMKAWEKSAEALH 62

Query: 62  GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
            ITP + + +G    E +  ++       +  +  +   +D ++   ++           
Sbjct: 63  RITPNRLITEGRDPLETALILNAAI---GSATVYSDAPDYDSFWLFRLYDAAGIKPNYIL 119

Query: 122 WDNGNSRWDLLD 133
            D G+    +  
Sbjct: 120 NDIGDLLRPIWP 131


>gi|284921890|emb|CBG34965.1| prophage tail length tape measure protein [Escherichia coli 042]
          Length = 1075

 Score = 36.3 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 19/176 (10%)

Query: 280 SHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER----------WGIDHKRCLENLT 329
              E +    +  + +   K  I +     +    +                K  L+N  
Sbjct: 694 KKTEAEKTEDIYKRLIKQQKEQIALAGQNTELAKMKYQVSQGELSTLSEAQKKTLLQNAA 753

Query: 330 LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNL 389
           L+ Q+           +   +++S     +     +     ++ +R+      ++ ++  
Sbjct: 754 LIDQKKIREQLAAYESSLADSNASARASDEAQLLGYG-EGSRMRERLQ-----EMWSIRQ 807

Query: 390 PFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
            F  +   EL  +Y+A      L ++EK+   ++ ++ L+    ++Y  K  +L  
Sbjct: 808 AFEQKN-NELLRQYQAGEIEEALWKQEKELNKKYLEERLSDQ--QDYYAKADALRN 860


>gi|169634356|ref|YP_001708092.1| hypothetical protein ABSDF2943 [Acinetobacter baumannii SDF]
 gi|169797171|ref|YP_001714964.1| hypothetical protein ABAYE3183 [Acinetobacter baumannii AYE]
 gi|260556075|ref|ZP_05828294.1| 3'-5' exonuclease [Acinetobacter baumannii ATCC 19606]
 gi|169150098|emb|CAM87992.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|169153148|emb|CAP02233.1| conserved hypothetical protein [Acinetobacter baumannii]
 gi|260410130|gb|EEX03429.1| 3'-5' exonuclease [Acinetobacter baumannii ATCC 19606]
          Length = 276

 Score = 36.3 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 56/219 (25%), Gaps = 28/219 (12%)

Query: 6   VIYDYET-FGRDVALDRPAQFAGVRVDRQWEK--IESTEVFFCKPADD----YLPDPEAV 58
           +++D ET                        +  +E       +         LP  E V
Sbjct: 10  LVFDIETLTDLKA--------GAHLYHLDLPEADVEQALTKIRRQESGMDFQRLPLHEIV 61

Query: 59  FITGITPQKA-------LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
            I+G+   ++        R+   EAE  ++    F   +  ++ +N  +FD         
Sbjct: 62  CISGLWIDESGFRLFSFSREHYSEAEILQKFLSIFDKRHPTLVSWNGSQFDLPVILFRAM 121

Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP-DGIQWPSRDDGATSFKLQDLALANGIE 170
            +   +               +  +  Y     D +   +  +G    KL D+A   G+ 
Sbjct: 122 YHGLSAPGLFDQGELDSQKRFNNYQNRYHHRHIDLMDVMAMFNGRNFQKLDDVACILGLP 181

Query: 171 HVNAHDAKA-----DVYATLALVWLIREKKPKLFEYLYD 204
                              L L           +     
Sbjct: 182 GKRGESGYHVPEYVRTEQWLKLTSYCEGDVLNTWFIYLR 220


>gi|170684087|ref|YP_001743259.1| lambda family phage tail tape measure protein [Escherichia coli
           SMS-3-5]
 gi|170521805|gb|ACB19983.1| phage tail tape measure protein, lambda family [Escherichia coli
           SMS-3-5]
          Length = 1075

 Score = 36.3 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 19/176 (10%)

Query: 280 SHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFER----------WGIDHKRCLENLT 329
              E +    +  + +   K  I +     +    +                K  L+N  
Sbjct: 694 KKTEAEKTEDIYKRLIKQQKEQIALAGQNTELAKMKYQVSQGELSTLSEAQKKTLLQNAA 753

Query: 330 LLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNL 389
           L+ Q+           +   +++S     +     +     ++ +R+      ++ ++  
Sbjct: 754 LIDQKKIREQLAAYESSLADSNASARASDEAQLLGYG-EGSRMRERLQ-----EMWSIRQ 807

Query: 390 PFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
            F  +   EL  +Y+A      L ++EK+   ++ ++ L+    ++Y  K  +L  
Sbjct: 808 AFEQKN-NELLRQYQAGEIEEALWKQEKELNKKYLEERLSDQ--QDYYAKADALRN 860


>gi|182416600|ref|ZP_02948017.1| SWF/SNF family helicase [Clostridium butyricum 5521]
 gi|237669036|ref|ZP_04529020.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182379558|gb|EDT77042.1| SWF/SNF family helicase [Clostridium butyricum 5521]
 gi|237657384|gb|EEP54940.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 1077

 Score = 36.3 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 392 SDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDE 451
            ++R    +FR R    P  L E+  +       + L ++ I+E  +K++ +      DE
Sbjct: 792 DEKRFTTRYFR-RLEESPEIL-EEIHKMVKPFILRRLKKNVIKELPDKIEKIMNIPLSDE 849

Query: 452 GKEGLINALYEYLQWVIPKE 471
            K        EY + +I K+
Sbjct: 850 QKIVY-ETYAEYAKNLIQKK 868


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.121    0.303 

Lambda     K      H
   0.267   0.0369    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,808,140,945
Number of Sequences: 14124377
Number of extensions: 134494838
Number of successful extensions: 527494
Number of sequences better than 10.0: 9348
Number of HSP's better than 10.0 without gapping: 4496
Number of HSP's successfully gapped in prelim test: 4852
Number of HSP's that attempted gapping in prelim test: 511000
Number of HSP's gapped (non-prelim): 11549
length of query: 471
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 328
effective length of database: 2,823,007,719
effective search space: 925946531832
effective search space used: 925946531832
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 83 (36.7 bits)